****************************************************************************
File name: 1jmc.pdb
    no. of DNA/RNA chains: 1 [B=8]
    no. of nucleotides:    8
    no. of atoms:          2751
    no. of waters:         90
    no. of metals:         0

****************************************************************************
List of 4 base stacks
  Note: A stack is an ordered list of nucleotides assembled together via
        base-stacking interactions, regardless of backbone connectivity.
        Stacking interactions within a stem are *not* included.
   1 nts=2 CF B.DC11,A.PHE238
   2 nts=3 CCF B.DC12,B.DC13,A.PHE269
   3 nts=3 CCR B.DC15,B.DC14,A.ARG210
   4 nts=3 CCF B.DC17,B.DC18,A.PHE386

****************************************************************************
Nucleotides not involved in stacking interactions
     nts=1 C B.DC16

****************************************************************************
List of 1 non-loop single-stranded segment
   1 nts=8 CCCCCCCC B.DC11,B.DC12,B.DC13,B.DC14,B.DC15,B.DC16,B.DC17,B.DC18

****************************************************************************
List of 1 splayed-apart dinucleotide
   1 B.DC16   B.DC17   angle=89     distance=13.6     ratio=0.70
----------------------------------------------------------------
Summary of 1 splayed-apart unit
   1 nts=2 CC B.DC16,B.DC17

****************************************************************************
Secondary structures in dot-bracket notation (dbn) as a whole and per chain
>1jmc nts=8 [whole]
CCCCCCCC
........
>1jmc-B #1 nts=8 4.51(1.32) [chain] DNA
CCCCCCCC
........

****************************************************************************
Summary of structural features of 8 nucleotides
  Note: the first five columns are: (1) serial number, (2) one-letter
    shorthand name, (3) dbn, (4) id string, (5) rmsd (~zero) of base
    ring atoms fitted against those in a standard base reference
    frame. The sixth (last) column contains a comma-separated list of
    features whose meanings are mostly self-explanatory, except for:
      turn: angle C1'(i-1)--C1'(i)--C1'(i+1) < 90 degrees
      break: no backbone linkage between O3'(i-1) and P(i)
   1  C . B.DC11   0.009  anti,non-pair-contact,ss-non-loop,phosphate
   2  C . B.DC12   0.010  anti,~C2'-endo,non-pair-contact,ss-non-loop
   3  C . B.DC13   0.009  ~C2'-endo,non-pair-contact,ss-non-loop,phosphate
   4  C . B.DC14   0.011  anti,~C3'-endo,non-pair-contact,ss-non-loop
   5  C . B.DC15   0.008  anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate
   6  C . B.DC16   0.015  anti,~C2'-endo,non-stack,ss-non-loop,phosphate,splayed-apart
   7  C . B.DC17   0.009  anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart
   8  C . B.DC18   0.011  anti,~C2'-endo,non-pair-contact,ss-non-loop

****************************************************************************
List of 10 additional files
   1 dssr-2ndstrs.bpseq -- secondary structure in bpseq format
   2 dssr-2ndstrs.ct -- secondary structure in connectivity table format
   3 dssr-2ndstrs.dbn -- secondary structure in dot-bracket notation
   4 dssr-torsions.txt -- backbone torsion angles and suite names
   5 dssr-splays.pdb -- an ensemble of splayed-apart units
   6 dssr-stacks.pdb -- an ensemble of base stacks
   7 dssr-rotmat.txt -- position vector and rotation matrix
   8 dssr-viewV.pdb -- vertical view of the principal moment of inertia
   9 dssr-viewH.pdb -- horizontal view of the principal moment of inertia
  10 dssr-viewT.pdb -- top view of the principal moment of inertia