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      "num_nts": 24,
      "nts_short": "GCGAGUAUAAACAGUUGGUUAGGC",
      "nts_long": "///C/11,///C/12,///C/13,///C/14,///C/15,///C/16,///C/17,///C/18,///C/19,///C/20,///C/21,///C/22,///C/23,///C/24,///C/25,///C/26,///C/27,///C/28,///C/29,///C/30,///C/31,///C/32,///C/33,///C/34",
      "num_stems": 1,
      "bridges": [
        {
          "index": 1,
          "num_nts": 22,
          "nts_short": "CGAGUAUAAACAGUUGGUUAGG",
          "nts_long": "///C/12,///C/13,///C/14,///C/15,///C/16,///C/17,///C/18,///C/19,///C/20,///C/21,///C/22,///C/23,///C/24,///C/25,///C/26,///C/27,///C/28,///C/29,///C/30,///C/31,///C/32,///C/33"
        }
      ]
    },
    {
      "index": 6,
      "type": "hairpin loop",
      "bridging_nts": [
        7
      ],
      "stem_indices": [
        -2
      ],
      "summary": "[1] 7 [C.33 C.41] 1",
      "num_nts": 9,
      "nts_short": "GCUCAAAGC",
      "nts_long": "///C/33,///C/34,///C/35,///C/36,///C/37,///C/38,///C/39,///C/40,///C/41",
      "num_stems": 1,
      "bridges": [
        {
          "index": 1,
          "num_nts": 7,
          "nts_short": "CUCAAAG",
          "nts_long": "///C/34,///C/35,///C/36,///C/37,///C/38,///C/39,///C/40"
        }
      ]
    }
  ],
  "num_junctions": 2,
  "junctions": [
    {
      "index": 1,
      "type": "4-way junction",
      "bridging_nts": [
        0,
        1,
        0,
        0
      ],
      "stem_indices": [
        1,
        2,
        -1,
        2
      ],
      "summary": "[4] 0 1 0 0 [A.5 A.12 A.6 A.39 A.41 A.33 A.34 A.11] 4 6 1 6",
      "is_repeated": true,
      "num_nts": 9,
      "nts_short": "GUAGCGCGC",
      "nts_long": "///A/5,///A/6,///A/39,///A/40,///A/41,///A/33,///A/34,///A/11,///A/12",
      "num_stems": 4,
      "bridges": [
        {
          "index": 1,
          "num_nts": 0,
          "nts_short": "",
          "nts_long": ""
        },
        {
          "index": 2,
          "num_nts": 1,
          "nts_short": "G",
          "nts_long": "///A/40"
        },
        {
          "index": 3,
          "num_nts": 0,
          "nts_short": "",
          "nts_long": ""
        },
        {
          "index": 4,
          "num_nts": 0,
          "nts_short": "",
          "nts_long": ""
        }
      ]
    },
    {
      "index": 2,
      "type": "4-way junction",
      "bridging_nts": [
        0,
        1,
        0,
        0
      ],
      "stem_indices": [
        5,
        6,
        -2,
        6
      ],
      "summary": "[4] 0 1 0 0 [C.5 C.12 C.6 C.39 C.41 C.33 C.34 C.11] 5 6 1 6",
      "is_repeated": true,
      "num_nts": 9,
      "nts_short": "GUAGCGCGC",
      "nts_long": "///C/5,///C/6,///C/39,///C/40,///C/41,///C/33,///C/34,///C/11,///C/12",
      "num_stems": 4,
      "bridges": [
        {
          "index": 1,
          "num_nts": 0,
          "nts_short": "",
          "nts_long": ""
        },
        {
          "index": 2,
          "num_nts": 1,
          "nts_short": "G",
          "nts_long": "///C/40"
        },
        {
          "index": 3,
          "num_nts": 0,
          "nts_short": "",
          "nts_long": ""
        },
        {
          "index": 4,
          "num_nts": 0,
          "nts_short": "",
          "nts_long": ""
        }
      ]
    }
  ],
  "num_ssSegments": 7,
  "ssSegments": [
    {
      "index": 1,
      "num_nts": 1,
      "nts_short": "A",
      "nts_long": "///A/1"
    },
    {
      "index": 2,
      "num_nts": 1,
      "nts_short": "G",
      "nts_long": "///A/42"
    },
    {
      "index": 3,
      "num_nts": 1,
      "nts_short": "U",
      "nts_long": "///B/1"
    },
    {
      "index": 4,
      "is_broken": true,
      "num_nts": 2,
      "nts_short": "gU",
      "nts_long": "///B/10,///B/11"
    },
    {
      "index": 5,
      "num_nts": 1,
      "nts_short": "G",
      "nts_long": "///C/42"
    },
    {
      "index": 6,
      "num_nts": 1,
      "nts_short": "U",
      "nts_long": "///D/1"
    },
    {
      "index": 7,
      "is_broken": true,
      "num_nts": 2,
      "nts_short": "gU",
      "nts_long": "///D/10,///D/11"
    }
  ],
  "num_kissingLoops": 2,
  "kissingLoops": [
    {
      "index": 1,
      "stem_index": 2,
      "hairpin_indices": [
        1,
        3
      ]
    },
    {
      "index": 2,
      "stem_index": 6,
      "hairpin_indices": [
        4,
        6
      ]
    }
  ],
  "num_Aminors": 12,
  "Aminors": [
    {
      "index": 1,
      "type": "X",
      "desc_short": "A vs C-G (WC)",
      "desc_long": "///A/17 vs ///A/2,///A/15",
      "A_nt1": {
        "desc": "///A/17 vs ///A/2",
        "face_type": "-",
        "hbonds_num": 2,
        "hbonds_desc": "N6(amino)-O2(carbonyl)[2.92],N1-O2'(hydroxyl)[2.94]"
      },
      "A_nt2": {
        "desc": "///A/17 vs ///A/15",
        "face_type": "+",
        "hbonds_num": 0,
        "hbonds_desc": ""
      }
    },
    {
      "index": 2,
      "type": "X",
      "desc_short": "A vs C-G (WC)",
      "desc_long": "///A/19 vs ///A/2,///A/15",
      "A_nt1": {
        "desc": "///A/19 vs ///A/2",
        "face_type": "+",
        "hbonds_num": 0,
        "hbonds_desc": ""
      },
      "A_nt2": {
        "desc": "///A/19 vs ///A/15",
        "face_type": "-",
        "hbonds_num": 2,
        "hbonds_desc": "N6(amino)-N3[3.12],N1-O2'(hydroxyl)[2.91]"
      }
    },
    {
      "index": 3,
      "type": "X",
      "desc_short": "A vs U-A (WC)",
      "desc_long": "///A/19 vs ///A/3,///A/14",
      "A_nt1": {
        "desc": "///A/19 vs ///A/3",
        "face_type": "+",
        "hbonds_num": 2,
        "hbonds_desc": "N7-O2'(hydroxyl)[2.69],N6(amino)-O2(carbonyl)[2.99]"
      },
      "A_nt2": {
        "desc": "///A/19 vs ///A/14",
        "face_type": "-",
        "hbonds_num": 0,
        "hbonds_desc": ""
      }
    },
    {
      "index": 4,
      "type": "X",
      "desc_short": "A vs U-A (WC)",
      "desc_long": "///A/20 vs ///A/3,///A/14",
      "A_nt1": {
        "desc": "///A/20 vs ///A/3",
        "face_type": "+",
        "hbonds_num": 0,
        "hbonds_desc": ""
      },
      "A_nt2": {
        "desc": "///A/20 vs ///A/14",
        "face_type": "-",
        "hbonds_num": 2,
        "hbonds_desc": "N6(amino)-N3[3.08],N1-O2'(hydroxyl)[2.82]"
      }
    },
    {
      "index": 5,
      "type": "X",
      "desc_short": "A vs C-G (WC)",
      "desc_long": "///A/21 vs ///A/4,///A/13",
      "A_nt1": {
        "desc": "///A/21 vs ///A/4",
        "face_type": "+",
        "hbonds_num": 1,
        "hbonds_desc": "N6(amino)-O2(carbonyl)[2.94]"
      },
      "A_nt2": {
        "desc": "///A/21 vs ///A/13",
        "face_type": "-",
        "hbonds_num": 1,
        "hbonds_desc": "N1-N2(amino)[2.73]"
      }
    },
    {
      "index": 6,
      "type": "X",
      "desc_short": "A vs G-C (WC)",
      "desc_long": "///A/31 vs ///A/43,///B/9",
      "A_nt1": {
        "desc": "///A/31 vs ///A/43",
        "face_type": "-",
        "hbonds_num": 2,
        "hbonds_desc": "N1-N2(amino)[3.04],N3-O2'(hydroxyl)[2.73]"
      },
      "A_nt2": {
        "desc": "///A/31 vs ///B/9",
        "face_type": "+",
        "hbonds_num": 0,
        "hbonds_desc": ""
      }
    },
    {
      "index": 7,
      "type": "X",
      "desc_short": "A vs C-G (WC)",
      "desc_long": "///C/17 vs ///C/2,///C/15",
      "A_nt1": {
        "desc": "///C/17 vs ///C/2",
        "face_type": "-",
        "hbonds_num": 2,
        "hbonds_desc": "N6(amino)-O2(carbonyl)[2.92],N1-O2'(hydroxyl)[2.81]"
      },
      "A_nt2": {
        "desc": "///C/17 vs ///C/15",
        "face_type": "+",
        "hbonds_num": 0,
        "hbonds_desc": ""
      }
    },
    {
      "index": 8,
      "type": "X",
      "desc_short": "A vs C-G (WC)",
      "desc_long": "///C/19 vs ///C/2,///C/15",
      "A_nt1": {
        "desc": "///C/19 vs ///C/2",
        "face_type": "+",
        "hbonds_num": 0,
        "hbonds_desc": ""
      },
      "A_nt2": {
        "desc": "///C/19 vs ///C/15",
        "face_type": "-",
        "hbonds_num": 2,
        "hbonds_desc": "N6(amino)-N3[2.85],N1-O2'(hydroxyl)[2.92]"
      }
    },
    {
      "index": 9,
      "type": "X",
      "desc_short": "A vs U-A (WC)",
      "desc_long": "///C/19 vs ///C/3,///C/14",
      "A_nt1": {
        "desc": "///C/19 vs ///C/3",
        "face_type": "+",
        "hbonds_num": 2,
        "hbonds_desc": "N7-O2'(hydroxyl)[2.64],N6(amino)-O2(carbonyl)[2.82]"
      },
      "A_nt2": {
        "desc": "///C/19 vs ///C/14",
        "face_type": "-",
        "hbonds_num": 0,
        "hbonds_desc": ""
      }
    },
    {
      "index": 10,
      "type": "X",
      "desc_short": "A vs U-A (WC)",
      "desc_long": "///C/20 vs ///C/3,///C/14",
      "A_nt1": {
        "desc": "///C/20 vs ///C/3",
        "face_type": "+",
        "hbonds_num": 0,
        "hbonds_desc": ""
      },
      "A_nt2": {
        "desc": "///C/20 vs ///C/14",
        "face_type": "-",
        "hbonds_num": 2,
        "hbonds_desc": "N6(amino)-N3[2.91],N1-O2'(hydroxyl)[3.05]"
      }
    },
    {
      "index": 11,
      "type": "X",
      "desc_short": "A vs C-G (WC)",
      "desc_long": "///C/21 vs ///C/4,///C/13",
      "A_nt1": {
        "desc": "///C/21 vs ///C/4",
        "face_type": "+",
        "hbonds_num": 1,
        "hbonds_desc": "N6(amino)-O2(carbonyl)[3.14]"
      },
      "A_nt2": {
        "desc": "///C/21 vs ///C/13",
        "face_type": "-",
        "hbonds_num": 1,
        "hbonds_desc": "N1-N2(amino)[2.99]"
      }
    },
    {
      "index": 12,
      "type": "X",
      "desc_short": "A vs G-C (WC)",
      "desc_long": "///C/31 vs ///C/43,///D/9",
      "A_nt1": {
        "desc": "///C/31 vs ///C/43",
        "face_type": "-",
        "hbonds_num": 2,
        "hbonds_desc": "N1-N2(amino)[3.02],N3-O2'(hydroxyl)[2.68]"
      },
      "A_nt2": {
        "desc": "///C/31 vs ///D/9",
        "face_type": "+",
        "hbonds_num": 0,
        "hbonds_desc": ""
      }
    }
  ],
  "num_riboseZippers": 2,
  "riboseZippers": [
    {
      "index": 1,
      "num_nts": 4,
      "nts_short": "CGAG",
      "nts_long": "///A/12,///A/13,///A/23,///A/24"
    },
    {
      "index": 2,
      "num_nts": 4,
      "nts_short": "CGAG",
      "nts_long": "///C/12,///C/13,///C/23,///C/24"
    }
  ],
  "num_splayUnits": 9,
  "splayUnits": [
    {
      "index": 1,
      "num_nts": 2,
      "nts_short": "AC",
      "nts_long": "///A/1,///A/2"
    },
    {
      "index": 2,
      "num_nts": 2,
      "nts_short": "GU",
      "nts_long": "///A/5,///A/6"
    },
    {
      "index": 3,
      "num_nts": 3,
      "nts_short": "ACA",
      "nts_long": "///A/21,///A/22,///A/23"
    },
    {
      "index": 4,
      "num_nts": 2,
      "nts_short": "GU",
      "nts_long": "///A/24,///A/25"
    },
    {
      "index": 5,
      "num_nts": 2,
      "nts_short": "GC",
      "nts_long": "///A/33,///A/34"
    },
    {
      "index": 6,
      "num_nts": 2,
      "nts_short": "GU",
      "nts_long": "///C/5,///C/6"
    },
    {
      "index": 7,
      "num_nts": 3,
      "nts_short": "ACA",
      "nts_long": "///C/21,///C/22,///C/23"
    },
    {
      "index": 8,
      "num_nts": 2,
      "nts_short": "GU",
      "nts_long": "///C/24,///C/25"
    },
    {
      "index": 9,
      "num_nts": 2,
      "nts_short": "GC",
      "nts_long": "///C/33,///C/34"
    }
  ],
  "num_HtypePknots": 6,
  "HtypePknots": [
    {
      "index": 1,
      "desc": "stem#1(hairpin#1) vs stem#2(hairpin#2) L1 groove=----- nts=0"
    },
    {
      "index": 2,
      "desc": "stem#1(hairpin#1) vs stem#2(hairpin#2) L2 groove=----- nts=0"
    },
    {
      "index": 3,
      "desc": "stem#1(hairpin#1) vs stem#2(hairpin#2) L3 groove=minor nts=18 UAUAAACAGUUGGUUAGG ///A/16,///A/17,///A/18,///A/19,///A/20,///A/21,///A/22,///A/23,///A/24,///A/25,///A/26,///A/27,///A/28,///A/29,///A/30,///A/31,///A/32,///A/33"
    },
    {
      "index": 4,
      "desc": "stem#5(hairpin#4) vs stem#6(hairpin#5) L1 groove=----- nts=0"
    },
    {
      "index": 5,
      "desc": "stem#5(hairpin#4) vs stem#6(hairpin#5) L2 groove=----- nts=0"
    },
    {
      "index": 6,
      "desc": "stem#5(hairpin#4) vs stem#6(hairpin#5) L3 groove=minor nts=17 AUAAACAGUUGGUUAGG ///C/17,///C/18,///C/19,///C/20,///C/21,///C/22,///C/23,///C/24,///C/25,///C/26,///C/27,///C/28,///C/29,///C/30,///C/31,///C/32,///C/33"
    }
  ],
  "pseudoknot_order": 1,
  "pseudoknot_nts": [
    {
      "index": 1,
      "symbols": "[]",
      "num_nts": 24,
      "nts_short": "UUUGAGCUCAAAUUUGAGCUCAAA",
      "nts_long": "///A/6,///A/7,///A/8,///A/9,///A/10,///A/11,///A/34,///A/35,///A/36,///A/37,///A/38,///A/39,///C/6,///C/7,///C/8,///C/9,///C/10,///C/11,///C/34,///C/35,///C/36,///C/37,///C/38,///C/39"
    }
  ],
  "dbn": {
    "all_chains": {
      "num_nts": 130,
      "num_chars": 135,
      "bseq": "ACUCGUUUGAGCGAGUAUAAACAGUUGGUUAGGCUCAAAGCGGAGAGCAG&UCUGCUCUCg&UCCAA&ACUCGUUUGAGCGAGUAUAAACAGUUGGUUAGGCUCAAAGCGGAGAGCAG&UCUGCUCUCg&UCCAA",
      "bseqUP": "ACUCGUUUGAGCGAGUAUAAACAGUUGGUUAGGCUCAAAGCGGAGAGCAG&UCUGCUCUCG&UCCAA&ACUCGUUUGAGCGAGUAUAAACAGUUGGUUAGGCUCAAAGCGGAGAGCAG&UCUGCUCUCG&UCCAA",
      "sstr": ".(((([[[[[[)))).........((((....(]]]]]].).((((((((&.)))))))).&.))))&((((([[[[[[)))))........((((....(]]]]]].).((((((((&.)))))))).&.))))",
      "form": ".AAA..AAA.AAAAA.........AAAAA.A..AAAA...A.AAAAAAA-&.AAA.AAA.-&A.AA-&AAAA.AAAAA.AAAA....B....AAA...A..AAAA...A.AAAAAAA-&.AAAAAAA.-&..A.-"
    },
    "chain_A": {
      "num_nts": 50,
      "num_chars": 50,
      "bseq": "ACUCGUUUGAGCGAGUAUAAACAGUUGGUUAGGCUCAAAGCGGAGAGCAG",
      "bseqUP": "ACUCGUUUGAGCGAGUAUAAACAGUUGGUUAGGCUCAAAGCGGAGAGCAG",
      "sstr": ".(((([[[[[[)))).........((((....(]]]]]].).((((((((",
      "form": ".AAA..AAA.AAAAA.........AAAAA.A..AAAA...A.AAAAAAA-"
    },
    "chain_B": {
      "num_nts": 15,
      "num_chars": 16,
      "bseq": "UCUGCUCUCg&UCCAA",
      "bseqUP": "UCUGCUCUCG&UCCAA",
      "sstr": ".)))))))).&.))))",
      "form": ".AAA.AAA.-&A.AA-"
    },
    "chain_C": {
      "num_nts": 50,
      "num_chars": 50,
      "bseq": "ACUCGUUUGAGCGAGUAUAAACAGUUGGUUAGGCUCAAAGCGGAGAGCAG",
      "bseqUP": "ACUCGUUUGAGCGAGUAUAAACAGUUGGUUAGGCUCAAAGCGGAGAGCAG",
      "sstr": "((((([[[[[[)))))........((((....(]]]]]].).((((((((",
      "form": "AAAA.AAAAA.AAAA....B....AAA...A..AAAA...A.AAAAAAA-"
    },
    "chain_D": {
      "num_nts": 15,
      "num_chars": 16,
      "bseq": "UCUGCUCUCg&UCCAA",
      "bseqUP": "UCUGCUCUCG&UCCAA",
      "sstr": ".)))))))).&.))))",
      "form": ".AAAAAAA.-&..A.-"
    }
  },
  "chains": {
    "chain_A": {
      "num_nts": 50,
      "bseq": "ACUCGUUUGAGCGAGUAUAAACAGUUGGUUAGGCUCAAAGCGGAGAGCAG",
      "sstr": ".(((([[[[[[)))).........((((....(]]]]]].).((((((((",
      "form": ".AAA..AAA.AAAAA.........AAAAA.A..AAAA...A.AAAAAAA-",
      "helical_rise": 0.977,
      "helical_rise_std": 3.193,
      "helical_axis": [
        0.761,
        0.025,
        0.649
      ],
      "point1": [
        186.857,
        129.943,
        121.622
      ],
      "point2": [
        222.683,
        131.134,
        152.164
      ],
      "num_chars": 148,
      "suite": "A4aC1aU1aC1aG!!U1aU1aU1aG1aA1aG1aC1aG1aA1aG1bU!!A!!U1bA0iA1bA!!C2aA1aG5dU1aU1aG1aG1aU1aU1gA1LG3aG!!C1aU1aC1aA1aA!!A1bG!!C1aG1aG1aA1aG1aA1aG1aC1aA!!G"
    },
    "chain_B": {
      "num_nts": 15,
      "bseq": "UCUGCUCUCg&UCCAA",
      "sstr": ".)))))))).&.))))",
      "form": ".AAA.AAA.-&A.AA-",
      "helical_rise": 3.022,
      "helical_rise_std": 0.754,
      "helical_axis": [
        -0.067,
        -0.061,
        -0.996
      ],
      "point1": [
        218.896,
        140.456,
        165.472
      ],
      "point2": [
        216.076,
        137.886,
        123.495
      ],
      "num_chars": 43,
      "suite": "U1aC1aU1aG1aC1aU1aC1aU1aC1bg..U!!C!!C1aA!!A"
    },
    "chain_C": {
      "num_nts": 50,
      "bseq": "ACUCGUUUGAGCGAGUAUAAACAGUUGGUUAGGCUCAAAGCGGAGAGCAG",
      "sstr": "((((([[[[[[)))))........((((....(]]]]]].).((((((((",
      "form": "AAAA.AAAAA.AAAA....B....AAA...A..AAAA...A.AAAAAAA-",
      "helical_rise": 0.496,
      "helical_rise_std": 3.100,
      "helical_axis": [
        0.579,
        0.056,
        -0.813
      ],
      "point1": [
        176.011,
        113.607,
        121.679
      ],
      "point2": [
        190.102,
        114.976,
        101.903
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  "refCoords": {
    "purine": [
      "   12 ATOMS,    12 BONDS",
      "    1 N      -2.2500   5.0000   0.4000",
      "    2 N      -2.2500  -0.5000   0.4000",
      "    3 N      -2.2500  -0.5000  -0.4000",
      "    4 N      -2.2500   5.0000  -0.4000",
      "    5 C       1.2500   5.0000   0.4000",
      "    6 C       1.2500  -0.5000   0.4000",
      "    7 C       1.2500  -0.5000  -0.4000",
      "    8 C       1.2500   5.0000  -0.4000",
      "    9 C      -2.2500   5.0000   0.4000",
      "   10 C      -2.2500  -0.5000   0.4000",
      "   11 C      -2.2500  -0.5000  -0.4000",
      "   12 C      -2.2500   5.0000  -0.4000",
      "    1     1     2",
      "    2     2     3",
      "    3     3     4",
      "    4     4     1",
      "    5     5     6",
      "    6     6     7",
      "    7     7     8",
      "    8     5     8",
      "    9     9     5",
      "   10    10     6",
      "   11    11     7",
      "   12    12     8"
    ],
    "pyrimidine": [
      "   12 ATOMS,    12 BONDS",
      "    1 N      -2.2500   5.0000   0.4000",
      "    2 N      -2.2500   1.0000   0.4000",
      "    3 N      -2.2500   1.0000  -0.4000",
      "    4 N      -2.2500   5.0000  -0.4000",
      "    5 C       1.2500   5.0000   0.4000",
      "    6 C       1.2500   1.0000   0.4000",
      "    7 C       1.2500   1.0000  -0.4000",
      "    8 C       1.2500   5.0000  -0.4000",
      "    9 C      -2.2500   5.0000   0.4000",
      "   10 C      -2.2500   1.0000   0.4000",
      "   11 C      -2.2500   1.0000  -0.4000",
      "   12 C      -2.2500   5.0000  -0.4000",
      "    1     1     2",
      "    2     2     3",
      "    3     3     4",
      "    4     4     1",
      "    5     5     6",
      "    6     6     7",
      "    7     7     8",
      "    8     5     8",
      "    9     9     5",
      "   10    10     6",
      "   11    11     7",
      "   12    12     8"
    ],
    "wc_pair": [
      "   12 ATOMS,    12 BONDS",
      "    1 N      -2.2500   5.0000   0.4000",
      "    2 N      -2.2500  -5.0000   0.4000",
      "    3 N      -2.2500  -5.0000  -0.4000",
      "    4 N      -2.2500   5.0000  -0.4000",
      "    5 C       2.2500   5.0000   0.4000",
      "    6 C       2.2500  -5.0000   0.4000",
      "    7 C       2.2500  -5.0000  -0.4000",
      "    8 C       2.2500   5.0000  -0.4000",
      "    9 C      -2.2500   5.0000   0.4000",
      "   10 C      -2.2500  -5.0000   0.4000",
      "   11 C      -2.2500  -5.0000  -0.4000",
      "   12 C      -2.2500   5.0000  -0.4000",
      "    1     1     2",
      "    2     2     3",
      "    3     3     4",
      "    4     4     1",
      "    5     5     6",
      "    6     6     7",
      "    7     7     8",
      "    8     5     8",
      "    9     9     5",
      "   10    10     6",
      "   11    11     7",
      "   12    12     8"
    ]
  },
  "metadata": {
    "license": "http://innovation.columbia.edu/technologies/CU20391",
    "url": "http://x3dna.org/",
    "url_alt": "http://home.x3dna.org/",
    "forum": "http://forum.x3dna.org/",
    "citation": "Lu et al. (2015). 'DSSR: an integrated software tool for dissecting the spatial structure of RNA.' Nucleic Acids Res., 43(21):e142 [doi:10.1093/nar/gkv716].",
    "str_id": "6uey",
    "num_naChains": 4,
    "naChains": "A=50,B=15,C=50,D=15",
    "num_atoms": 2773,
    "num_waters": 0,
    "num_metals": 11,
    "metals_desc": "Mg=9,V=2",
    "num_notes": 52,
    "notes": [
      {
        "Aminors": "A-minor interactions (including types I and II)"
      },
      {
        "Cstem_index": "stem index of the 'Canonical' helix in k-turn"
      },
      {
        "Cstem_pair": "Cstem bp delineating the k-turn internal loop"
      },
      {
        "Dp": "perpendicular distance of the 3' P atom to the glycosidic bond"
      },
      {
        "GA_pair": "sheared G-A pair in k-turn"
      },
      {
        "HtypePknot": "H-type pseudoknot"
      },
      {
        "Kturn": "kink-turn (k-turn)"
      },
      {
        "LW": "Leontis-Westhof"
      },
      {
        "NCstem_index": "stem index of the 'Non-Canonical' helix in k-turn"
      },
      {
        "NCstem_pair": "NCstem bp delineating the k-turn internal loop"
      },
      {
        "Uturn": "U-turn of the UNR- or GNRA-type"
      },
      {
        "aa": "amino acid"
      },
      {
        "atom_pair": "symbols of the two atoms involved in an H-bond"
      },
      {
        "auxfiles": "auxiliary files"
      },
      {
        "glyco_bond": "conformation of base related to sugar (syn or anti)"
      },
      {
        "bb_type": "backbone conformation, BI or BII"
      },
      {
        "bending_angle": "angle between two helical axes"
      },
      {
        "bp": "base pair"
      },
      {
        "bseq": "base sequence in one-letter code"
      },
      {
        "bulge": "bulge loop"
      },
      {
        "coaxStacks": "coaxial stacking of stems within a helix"
      },
      {
        "dbn": "dot bracket notation"
      },
      {
        "desc": "description"
      },
      {
        "donAcc_type": "donor/acceptor type of the atom pair in an H-bond"
      },
      {
        "epsilon_zeta": "difference between epsilon and zeta torsion angles"
      },
      {
        "hairpin": "hairpin loop"
      },
      {
        "hbond": "hydrogen bond (H-bond)"
      },
      {
        "helix": "defined by base-stacking interactions, regardless of bp type and backbone connectivity"
      },
      {
        "id": "identifier"
      },
      {
        "iloop": "internal loop"
      },
      {
        "index": "serial number"
      },
      {
        "isoCanonPairs": "isolated canonical pairs"
      },
      {
        "junction": "(multi-branched) junction loop"
      },
      {
        "kissingLoop": "kissing loop"
      },
      {
        "multiplet": "3+ bases in a coplanar geometry"
      },
      {
        "na": "nucleic acid"
      },
      {
        "nonPair": "two nts not forming a pair, but with H-bonding/stacking interactions"
      },
      {
        "nonStack": "nucleotide not involved in stacking interactions"
      },
      {
        "nt": "nucleotide"
      },
      {
        "num": "number"
      },
      {
        "oArea": "overlap areas between two bases, including exocyclic atoms"
      },
      {
        "oArea_ring": "overlap areas between two bases, including only ring atoms"
      },
      {
        "phosContacts": "H-bonding and atom-capping interactions involving a phosphate"
      },
      {
        "residue_pair": "types of the two residues involved in an H-bond"
      },
      {
        "rmsd": "root-mean-squares deviation"
      },
      {
        "serNum": "serial number"
      },
      {
        "ssSegments": "single-stranded segments not involved in loops"
      },
      {
        "ssZp": "Z-coordinate of the 3' phosphorus atom with reference to the 5' base plane"
      },
      {
        "sstr": "secondary structure in dbn"
      },
      {
        "stem": "helix consisting of only canonical pairs, with a continuous backbone"
      },
      {
        "str_id": "structure identifier, derived from inpfile with extension removed"
      },
      {
        "vert_dist": "vertical distance from an atom to a base plane"
      }
    ],
    "num_auxfiles": 18,
    "auxfiles": [
      {
        "index": 1,
        "name": "dssr-pairs.pdb",
        "desc": "an ensemble of base pairs"
      },
      {
        "index": 2,
        "name": "dssr-multiplets.pdb",
        "desc": "an ensemble of multiplets"
      },
      {
        "index": 3,
        "name": "dssr-stems.pdb",
        "desc": "an ensemble of stems"
      },
      {
        "index": 4,
        "name": "dssr-helices.pdb",
        "desc": "an ensemble of helices (coaxial stacking)"
      },
      {
        "index": 5,
        "name": "dssr-hairpins.pdb",
        "desc": "an ensemble of hairpin loops"
      },
      {
        "index": 6,
        "name": "dssr-junctions.pdb",
        "desc": "an ensemble of junctions (multi-branch)"
      },
      {
        "index": 7,
        "name": "dssr-2ndstrs.bpseq",
        "desc": "secondary structure in bpseq format"
      },
      {
        "index": 8,
        "name": "dssr-2ndstrs.ct",
        "desc": "secondary structure in connectivity table format"
      },
      {
        "index": 9,
        "name": "dssr-2ndstrs.dbn",
        "desc": "secondary structure in dot-bracket notation"
      },
      {
        "index": 10,
        "name": "dssr-torsions.txt",
        "desc": "backbone torsion angles and suite names"
      },
      {
        "index": 11,
        "name": "dssr-splays.pdb",
        "desc": "an ensemble of splayed-apart units"
      },
      {
        "index": 12,
        "name": "dssr-Aminors.pdb",
        "desc": "an ensemble of A minor motifs (types I and II)"
      },
      {
        "index": 13,
        "name": "dssr-stacks.pdb",
        "desc": "an ensemble of base stacks"
      },
      {
        "index": 14,
        "name": "dssr-atom2bases.pdb",
        "desc": "an ensemble of atom-base stacking interactions"
      },
      {
        "index": 15,
        "name": "dssr-rotmat.txt",
        "desc": "position vector and rotation matrix"
      },
      {
        "index": 16,
        "name": "dssr-viewV.pdb",
        "desc": "vertical view of the principal moment of inertia"
      },
      {
        "index": 17,
        "name": "dssr-viewH.pdb",
        "desc": "horizontal view of the principal moment of inertia"
      },
      {
        "index": 18,
        "name": "dssr-viewT.pdb",
        "desc": "top view of the principal moment of inertia"
      }
    ],
    "time_used": "999"
  }
}