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      "summary": "[2] 1 3 [3.930 3.1381 3.932 3.1377] 4 2",
      "num_nts": 8,
      "nts_short": "GCAUUCCC",
      "nts_long": "///3/930,///3/931,///3/932,///3/1377,///3/1378,///3/1379,///3/1380,///3/1381",
      "num_stems": 2,
      "bridges": [
        {
          "index": 1,
          "num_nts": 1,
          "nts_short": "C",
          "nts_long": "///3/931"
        },
        {
          "index": 2,
          "num_nts": 3,
          "nts_short": "UCC",
          "nts_long": "///3/1378,///3/1379,///3/1380"
        }
      ]
    },
    {
      "index": 3,
      "type": "symmetric internal loop",
      "bridging_nts": [
        2,
        2
      ],
      "stem_indices": [
        -2,
        10
      ],
      "summary": "[2] 2 2 [3.1003 3.1020 3.1006 3.1017] 1 4",
      "num_nts": 8,
      "nts_short": "CUUUAUUG",
      "nts_long": "///3/1003,///3/1004,///3/1005,///3/1006,///3/1017,///3/1018,///3/1019,///3/1020",
      "num_stems": 2,
      "bridges": [
        {
          "index": 1,
          "num_nts": 2,
          "nts_short": "UU",
          "nts_long": "///3/1004,///3/1005"
        },
        {
          "index": 2,
          "num_nts": 2,
          "nts_short": "UU",
          "nts_long": "///3/1018,///3/1019"
        }
      ]
    },
    {
      "index": 4,
      "type": "asymmetric internal loop",
      "bridging_nts": [
        3,
        1
      ],
      "stem_indices": [
        12,
        13
      ],
      "summary": "[2] 3 1 [3.1049 3.1203 3.1053 3.1201] 3 2",
      "num_nts": 8,
      "nts_short": "UGCAUAUG",
      "nts_long": "///3/1049,///3/1050,///3/1051,///3/1052,///3/1053,///3/1201,///3/1202,///3/1203",
      "num_stems": 2,
      "bridges": [
        {
          "index": 1,
          "num_nts": 3,
          "nts_short": "GCA",
          "nts_long": "///3/1050,///3/1051,///3/1052"
        },
        {
          "index": 2,
          "num_nts": 1,
          "nts_short": "U",
          "nts_long": "///3/1202"
        }
      ]
    },
    {
      "index": 5,
      "type": "symmetric internal loop",
      "bridging_nts": [
        2,
        2
      ],
      "stem_indices": [
        25,
        26
      ],
      "summary": "[2] 2 2 [3.1256 3.1273 3.1259 3.1270] 2 4",
      "num_nts": 8,
      "nts_short": "CUACGAUG",
      "nts_long": "///3/1256,///3/1257,///3/1258,///3/1259,///3/1270,///3/1271,///3/1272,///3/1273",
      "num_stems": 2,
      "bridges": [
        {
          "index": 1,
          "num_nts": 2,
          "nts_short": "UA",
          "nts_long": "///3/1257,///3/1258"
        },
        {
          "index": 2,
          "num_nts": 2,
          "nts_short": "AU",
          "nts_long": "///3/1271,///3/1272"
        }
      ]
    },
    {
      "index": 6,
      "type": "asymmetric internal loop",
      "bridging_nts": [
        2,
        4
      ],
      "stem_indices": [
        24,
        25
      ],
      "summary": "[2] 2 4 [3.1252 3.1279 3.1255 3.1274] 3 2",
      "num_nts": 10,
      "nts_short": "GUUGCUAAUC",
      "nts_long": "///3/1252,///3/1253,///3/1254,///3/1255,///3/1274,///3/1275,///3/1276,///3/1277,///3/1278,///3/1279",
      "num_stems": 2,
      "bridges": [
        {
          "index": 1,
          "num_nts": 2,
          "nts_short": "UU",
          "nts_long": "///3/1253,///3/1254"
        },
        {
          "index": 2,
          "num_nts": 4,
          "nts_short": "UAAU",
          "nts_long": "///3/1275,///3/1276,///3/1277,///3/1278"
        }
      ]
    },
    {
      "index": 7,
      "type": "asymmetric internal loop",
      "bridging_nts": [
        2,
        5
      ],
      "stem_indices": [
        -5,
        22
      ],
      "summary": "[2] 2 5 [3.1155 3.1178 3.1158 3.1172] 1 5",
      "num_nts": 11,
      "nts_short": "CUGCGAGGAAG",
      "nts_long": "///3/1155,///3/1156,///3/1157,///3/1158,///3/1172,///3/1173,///3/1174,///3/1175,///3/1176,///3/1177,///3/1178",
      "num_stems": 2,
      "bridges": [
        {
          "index": 1,
          "num_nts": 2,
          "nts_short": "UG",
          "nts_long": "///3/1156,///3/1157"
        },
        {
          "index": 2,
          "num_nts": 5,
          "nts_short": "AGGAA",
          "nts_long": "///3/1173,///3/1174,///3/1175,///3/1176,///3/1177"
        }
      ]
    },
    {
      "index": 8,
      "type": "symmetric internal loop",
      "bridging_nts": [
        4,
        4
      ],
      "stem_indices": [
        -7,
        27
      ],
      "summary": "[2] 4 4 [3.1300 3.1331 3.1305 3.1326] 1 7",
      "num_nts": 12,
      "nts_short": "CGGAUUAUGAAG",
      "nts_long": "///3/1300,///3/1301,///3/1302,///3/1303,///3/1304,///3/1305,///3/1326,///3/1327,///3/1328,///3/1329,///3/1330,///3/1331",
      "num_stems": 2,
      "bridges": [
        {
          "index": 1,
          "num_nts": 4,
          "nts_short": "GGAU",
          "nts_long": "///3/1301,///3/1302,///3/1303,///3/1304"
        },
        {
          "index": 2,
          "num_nts": 4,
          "nts_short": "UGAA",
          "nts_long": "///3/1327,///3/1328,///3/1329,///3/1330"
        }
      ]
    },
    {
      "index": 9,
      "type": "asymmetric internal loop",
      "bridging_nts": [
        4,
        5
      ],
      "stem_indices": [
        19,
        20
      ],
      "summary": "[2] 4 5 [3.1120 3.1147 3.1125 3.1141] 6 2",
      "num_nts": 13,
      "nts_short": "ACUUGCGAACUUU",
      "nts_long": "///3/1120,///3/1121,///3/1122,///3/1123,///3/1124,///3/1125,///3/1141,///3/1142,///3/1143,///3/1144,///3/1145,///3/1146,///3/1147",
      "num_stems": 2,
      "bridges": [
        {
          "index": 1,
          "num_nts": 4,
          "nts_short": "CUUG",
          "nts_long": "///3/1121,///3/1122,///3/1123,///3/1124"
        },
        {
          "index": 2,
          "num_nts": 5,
          "nts_short": "AACUU",
          "nts_long": "///3/1142,///3/1143,///3/1144,///3/1145,///3/1146"
        }
      ]
    },
    {
      "index": 10,
      "type": "symmetric internal loop",
      "bridging_nts": [
        5,
        5
      ],
      "stem_indices": [
        23,
        24
      ],
      "summary": "[2] 5 5 [3.1244 3.1287 3.1250 3.1281] 7 3",
      "num_nts": 14,
      "nts_short": "UACAAAGCAAAAAG",
      "nts_long": "///3/1244,///3/1245,///3/1246,///3/1247,///3/1248,///3/1249,///3/1250,///3/1281,///3/1282,///3/1283,///3/1284,///3/1285,///3/1286,///3/1287",
      "num_stems": 2,
      "bridges": [
        {
          "index": 1,
          "num_nts": 5,
          "nts_short": "ACAAA",
          "nts_long": "///3/1245,///3/1246,///3/1247,///3/1248,///3/1249"
        },
        {
          "index": 2,
          "num_nts": 5,
          "nts_short": "AAAAA",
          "nts_long": "///3/1282,///3/1283,///3/1284,///3/1285,///3/1286"
        }
      ]
    }
  ],
  "num_junctions": 8,
  "junctions": [
    {
      "index": 1,
      "type": "3-way junction",
      "bridging_nts": [
        2,
        1,
        2
      ],
      "stem_indices": [
        3,
        4,
        -6
      ],
      "summary": "[3] 2 1 2 [3.940 3.1337 3.943 3.1232 3.1234 3.1334] 5 8 1",
      "num_nts": 11,
      "nts_short": "UGGAUACGGAA",
      "nts_long": "///3/940,///3/941,///3/942,///3/943,///3/1232,///3/1233,///3/1234,///3/1334,///3/1335,///3/1336,///3/1337",
      "num_stems": 3,
      "bridges": [
        {
          "index": 1,
          "num_nts": 2,
          "nts_short": "GG",
          "nts_long": "///3/941,///3/942"
        },
        {
          "index": 2,
          "num_nts": 1,
          "nts_short": "A",
          "nts_long": "///3/1233"
        },
        {
          "index": 3,
          "num_nts": 2,
          "nts_short": "GA",
          "nts_long": "///3/1335,///3/1336"
        }
      ]
    },
    {
      "index": 2,
      "type": "3-way junction",
      "bridging_nts": [
        1,
        2,
        2
      ],
      "stem_indices": [
        18,
        19,
        -5
      ],
      "summary": "[3] 1 2 2 [3.1113 3.1181 3.1115 3.1152 3.1155 3.1178] 4 6 1",
      "num_nts": 11,
      "nts_short": "UUUAUACGGCG",
      "nts_long": "///3/1113,///3/1114,///3/1115,///3/1152,///3/1153,///3/1154,///3/1155,///3/1178,///3/1179,///3/1180,///3/1181",
      "num_stems": 3,
      "bridges": [
        {
          "index": 1,
          "num_nts": 1,
          "nts_short": "U",
          "nts_long": "///3/1114"
        },
        {
          "index": 2,
          "num_nts": 2,
          "nts_short": "UA",
          "nts_long": "///3/1153,///3/1154"
        },
        {
          "index": 3,
          "num_nts": 2,
          "nts_short": "GC",
          "nts_long": "///3/1179,///3/1180"
        }
      ]
    },
    {
      "index": 3,
      "type": "3-way junction",
      "bridging_nts": [
        0,
        3,
        3
      ],
      "stem_indices": [
        15,
        16,
        17
      ],
      "summary": "[3] 0 3 3 [3.1070 3.1099 3.1071 3.1080 3.1084 3.1095] 6 3 3",
      "num_nts": 12,
      "nts_short": "UGUGUUGCGCAA",
      "nts_long": "///3/1070,///3/1071,///3/1080,///3/1081,///3/1082,///3/1083,///3/1084,///3/1095,///3/1096,///3/1097,///3/1098,///3/1099",
      "num_stems": 3,
      "bridges": [
        {
          "index": 1,
          "num_nts": 0,
          "nts_short": "",
          "nts_long": ""
        },
        {
          "index": 2,
          "num_nts": 3,
          "nts_short": "GUU",
          "nts_long": "///3/1081,///3/1082,///3/1083"
        },
        {
          "index": 3,
          "num_nts": 3,
          "nts_short": "GCA",
          "nts_long": "///3/1096,///3/1097,///3/1098"
        }
      ]
    },
    {
      "index": 4,
      "type": "3-way junction",
      "bridging_nts": [
        2,
        1,
        4
      ],
      "stem_indices": [
        7,
        -1,
        11
      ],
      "summary": "[3] 2 1 4 [3.987 3.1212 3.990 3.1042 3.1044 3.1207] 7 1 2",
      "num_nts": 13,
      "nts_short": "CUUGCAGCUUACG",
      "nts_long": "///3/987,///3/988,///3/989,///3/990,///3/1042,///3/1043,///3/1044,///3/1207,///3/1208,///3/1209,///3/1210,///3/1211,///3/1212",
      "num_stems": 3,
      "bridges": [
        {
          "index": 1,
          "num_nts": 2,
          "nts_short": "UU",
          "nts_long": "///3/988,///3/989"
        },
        {
          "index": 2,
          "num_nts": 1,
          "nts_short": "A",
          "nts_long": "///3/1043"
        },
        {
          "index": 3,
          "num_nts": 4,
          "nts_short": "UUAC",
          "nts_long": "///3/1208,///3/1209,///3/1210,///3/1211"
        }
      ]
    },
    {
      "index": 5,
      "type": "3-way junction",
      "bridging_nts": [
        3,
        6,
        2
      ],
      "stem_indices": [
        -6,
        23,
        -7
      ],
      "summary": "[3] 3 6 2 [3.1234 3.1334 3.1238 3.1293 3.1300 3.1331] 1 7 1",
      "num_nts": 17,
      "nts_short": "CAAUGCGUAGUCCGUCG",
      "nts_long": "///3/1234,///3/1235,///3/1236,///3/1237,///3/1238,///3/1293,///3/1294,///3/1295,///3/1296,///3/1297,///3/1298,///3/1299,///3/1300,///3/1331,///3/1332,///3/1333,///3/1334",
      "num_stems": 3,
      "bridges": [
        {
          "index": 1,
          "num_nts": 3,
          "nts_short": "AAU",
          "nts_long": "///3/1235,///3/1236,///3/1237"
        },
        {
          "index": 2,
          "num_nts": 6,
          "nts_short": "GUAGUC",
          "nts_long": "///3/1294,///3/1295,///3/1296,///3/1297,///3/1298,///3/1299"
        },
        {
          "index": 3,
          "num_nts": 2,
          "nts_short": "UC",
          "nts_long": "///3/1332,///3/1333"
        }
      ]
    },
    {
      "index": 6,
      "type": "3-way junction",
      "bridging_nts": [
        2,
        5,
        6
      ],
      "stem_indices": [
        2,
        3,
        28
      ],
      "summary": "[3] 2 5 6 [3.933 3.1376 3.936 3.1341 3.1347 3.1369] 2 5 7",
      "num_nts": 19,
      "nts_short": "CAAGCUAGUAAUGAAUACG",
      "nts_long": "///3/933,///3/934,///3/935,///3/936,///3/1341,///3/1342,///3/1343,///3/1344,///3/1345,///3/1346,///3/1347,///3/1369,///3/1370,///3/1371,///3/1372,///3/1373,///3/1374,///3/1375,///3/1376",
      "num_stems": 3,
      "bridges": [
        {
          "index": 1,
          "num_nts": 2,
          "nts_short": "AA",
          "nts_long": "///3/934,///3/935"
        },
        {
          "index": 2,
          "num_nts": 5,
          "nts_short": "UAGUA",
          "nts_long": "///3/1342,///3/1343,///3/1344,///3/1345,///3/1346"
        },
        {
          "index": 3,
          "num_nts": 6,
          "nts_short": "GAAUAC",
          "nts_long": "///3/1370,///3/1371,///3/1372,///3/1373,///3/1374,///3/1375"
        }
      ]
    },
    {
      "index": 7,
      "type": "3-way junction",
      "bridging_nts": [
        4,
        5,
        5
      ],
      "stem_indices": [
        -4,
        15,
        18
      ],
      "summary": "[3] 4 5 5 [3.1060 3.1190 3.1065 3.1104 3.1110 3.1184] 1 6 4",
      "num_nts": 20,
      "nts_short": "CGUCAGCGCAACCGACGACG",
      "nts_long": "///3/1060,///3/1061,///3/1062,///3/1063,///3/1064,///3/1065,///3/1104,///3/1105,///3/1106,///3/1107,///3/1108,///3/1109,///3/1110,///3/1184,///3/1185,///3/1186,///3/1187,///3/1188,///3/1189,///3/1190",
      "num_stems": 3,
      "bridges": [
        {
          "index": 1,
          "num_nts": 4,
          "nts_short": "GUCA",
          "nts_long": "///3/1061,///3/1062,///3/1063,///3/1064"
        },
        {
          "index": 2,
          "num_nts": 5,
          "nts_short": "GCAAC",
          "nts_long": "///3/1105,///3/1106,///3/1107,///3/1108,///3/1109"
        },
        {
          "index": 3,
          "num_nts": 5,
          "nts_short": "ACGAC",
          "nts_long": "///3/1185,///3/1186,///3/1187,///3/1188,///3/1189"
        }
      ]
    },
    {
      "index": 8,
      "type": "3-way junction",
      "bridging_nts": [
        6,
        10,
        3
      ],
      "stem_indices": [
        5,
        6,
        7
      ],
      "summary": "[3] 6 10 3 [3.952 3.1222 3.959 3.970 3.981 3.1218] 2 2 7",
      "num_nts": 25,
      "nts_short": "UUUAAUUCGAAGAACCUUACGGCUA",
      "nts_long": "///3/952,///3/953,///3/954,///3/955,///3/956,///3/957,///3/958,///3/959,///3/970,///3/971,///3/972,///3/973,///3/974,///3/975,///3/976,///3/977,///3/978,///3/979,///3/980,///3/981,///3/1218,///3/1219,///3/1220,///3/1221,///3/1222",
      "num_stems": 3,
      "bridges": [
        {
          "index": 1,
          "num_nts": 6,
          "nts_short": "UUAAUU",
          "nts_long": "///3/953,///3/954,///3/955,///3/956,///3/957,///3/958"
        },
        {
          "index": 2,
          "num_nts": 10,
          "nts_short": "AAGAACCUUA",
          "nts_long": "///3/971,///3/972,///3/973,///3/974,///3/975,///3/976,///3/977,///3/978,///3/979,///3/980"
        },
        {
          "index": 3,
          "num_nts": 3,
          "nts_short": "GCU",
          "nts_long": "///3/1219,///3/1220,///3/1221"
        }
      ]
    }
  ],
  "num_ssSegments": 6,
  "ssSegments": [
    {
      "index": 1,
      "num_nts": 3,
      "nts_short": "GGG",
      "nts_long": "///3/924,///3/925,///3/926"
    },
    {
      "index": 2,
      "num_nts": 4,
      "nts_short": "GAAA",
      "nts_long": "///3/999,///3/1000,///3/1001,///3/1002"
    },
    {
      "index": 3,
      "is_broken": true,
      "num_nts": 7,
      "nts_short": "GUGAAUC",
      "nts_long": "///3/1021,///3/1022,///3/1031,///3/1032,///3/1033,///3/1034,///3/1035"
    },
    {
      "index": 4,
      "num_nts": 1,
      "nts_short": "G",
      "nts_long": "///7/26"
    },
    {
      "index": 5,
      "num_nts": 2,
      "nts_short": "AG",
      "nts_long": "///7/44,///7/45"
    },
    {
      "index": 6,
      "num_nts": 2,
      "nts_short": "UU",
      "nts_long": "///9/3,///9/4"
    }
  ],
  "num_Aminors": 19,
  "Aminors": [
    {
      "index": 1,
      "type": "II",
      "desc_short": "A vs C-G (WC)",
      "desc_long": "///3/955 vs ///3/982,///3/1217",
      "A_nt1": {
        "desc": "///3/955 vs ///3/982",
        "face_type": "-",
        "hbonds_num": 2,
        "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.34],N3-O2'(hydroxyl)[3.20]"
      },
      "A_nt2": {
        "desc": "///3/955 vs ///3/1217",
        "face_type": "+",
        "hbonds_num": 0,
        "hbonds_desc": ""
      }
    },
    {
      "index": 2,
      "type": "X",
      "desc_short": "A vs G-C (WC)",
      "desc_long": "///3/993 vs ///3/990,///3/1042",
      "A_nt1": {
        "desc": "///3/993 vs ///3/990",
        "face_type": "+",
        "hbonds_num": 0,
        "hbonds_desc": ""
      },
      "A_nt2": {
        "desc": "///3/993 vs ///3/1042",
        "face_type": "-",
        "hbonds_num": 2,
        "hbonds_desc": "N6(amino)-O2'(hydroxyl)[2.87],N1-O2'(hydroxyl)[2.32]"
      }
    },
    {
      "index": 3,
      "type": "I",
      "desc_short": "A vs G-C (WC)",
      "desc_long": "///3/1013 vs ///3/985,///3/1214",
      "A_nt1": {
        "desc": "///3/1013 vs ///3/985",
        "face_type": "+",
        "hbonds_num": 0,
        "hbonds_desc": ""
      },
      "A_nt2": {
        "desc": "///3/1013 vs ///3/1214",
        "face_type": "-",
        "hbonds_num": 1,
        "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.47]"
      }
    },
    {
      "index": 4,
      "type": "I",
      "desc_short": "A vs G-U (Wobble)",
      "desc_long": "///3/1098 vs ///3/1071,///3/1080",
      "A_nt1": {
        "desc": "///3/1098 vs ///3/1071",
        "face_type": "+",
        "hbonds_num": 3,
        "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.14],N1-O2'(hydroxyl)[2.23],N3-N2(amino)[3.20]"
      },
      "A_nt2": {
        "desc": "///3/1098 vs ///3/1080",
        "face_type": "-",
        "hbonds_num": 0,
        "hbonds_desc": ""
      }
    },
    {
      "index": 5,
      "type": "X",
      "desc_short": "A vs C-G (WC)",
      "desc_long": "///3/1127 vs ///3/1125,///3/1141",
      "A_nt1": {
        "desc": "///3/1127 vs ///3/1125",
        "face_type": "+",
        "hbonds_num": 0,
        "hbonds_desc": ""
      },
      "A_nt2": {
        "desc": "///3/1127 vs ///3/1141",
        "face_type": "-",
        "hbonds_num": 1,
        "hbonds_desc": "N6(amino)-N3[3.17]"
      }
    },
    {
      "index": 6,
      "type": "X",
      "desc_short": "A vs C-G (WC)",
      "desc_long": "///3/1127 vs ///3/1126,///3/1140",
      "A_nt1": {
        "desc": "///3/1127 vs ///3/1126",
        "face_type": "+",
        "hbonds_num": 1,
        "hbonds_desc": "N6(amino)-O2(carbonyl)[2.60]"
      },
      "A_nt2": {
        "desc": "///3/1127 vs ///3/1140",
        "face_type": "-",
        "hbonds_num": 1,
        "hbonds_desc": "N6(amino)*N2(amino)[2.83]"
      }
    },
    {
      "index": 7,
      "type": "X",
      "desc_short": "A vs C-G (WC)",
      "desc_long": "///3/1143 vs ///3/1125,///3/1141",
      "A_nt1": {
        "desc": "///3/1143 vs ///3/1125",
        "face_type": "-",
        "hbonds_num": 1,
        "hbonds_desc": "N6(amino)-O2(carbonyl)[2.80]"
      },
      "A_nt2": {
        "desc": "///3/1143 vs ///3/1141",
        "face_type": "+",
        "hbonds_num": 2,
        "hbonds_desc": "N7-N2(amino)[3.02],N6(amino)*N2(amino)[2.91]"
      }
    },
    {
      "index": 8,
      "type": "II",
      "desc_short": "A vs G-C (WC)",
      "desc_long": "///3/1166 vs ///3/1085,///3/1094",
      "A_nt1": {
        "desc": "///3/1166 vs ///3/1085",
        "face_type": "+",
        "hbonds_num": 0,
        "hbonds_desc": ""
      },
      "A_nt2": {
        "desc": "///3/1166 vs ///3/1094",
        "face_type": "-",
        "hbonds_num": 1,
        "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.31]"
      }
    },
    {
      "index": 9,
      "type": "I",
      "desc_short": "A vs G-C (WC)",
      "desc_long": "///3/1167 vs ///3/1086,///3/1093",
      "A_nt1": {
        "desc": "///3/1167 vs ///3/1086",
        "face_type": "+",
        "hbonds_num": 1,
        "hbonds_desc": "N1-O2'(hydroxyl)[3.50]"
      },
      "A_nt2": {
        "desc": "///3/1167 vs ///3/1093",
        "face_type": "-",
        "hbonds_num": 1,
        "hbonds_desc": "O2'(hydroxyl)-O2(carbonyl)[3.10]"
      }
    },
    {
      "index": 10,
      "type": "X",
      "desc_short": "A vs G-C (WC)",
      "desc_long": "///3/1224 vs ///3/951,///3/1223",
      "A_nt1": {
        "desc": "///3/1224 vs ///3/951",
        "face_type": "+",
        "hbonds_num": 1,
        "hbonds_desc": "N1-N2(amino)[2.39]"
      },
      "A_nt2": {
        "desc": "///3/1224 vs ///3/1223",
        "face_type": "-",
        "hbonds_num": 0,
        "hbonds_desc": ""
      }
    },
    {
      "index": 11,
      "type": "X",
      "desc_short": "A vs G-C (WC)",
      "desc_long": "///3/1235 vs ///3/1238,///3/1293",
      "A_nt1": {
        "desc": "///3/1235 vs ///3/1238",
        "face_type": "-",
        "hbonds_num": 2,
        "hbonds_desc": "N1-N2(amino)[3.06],N3-O2'(hydroxyl)[3.38]"
      },
      "A_nt2": {
        "desc": "///3/1235 vs ///3/1293",
        "face_type": "+",
        "hbonds_num": 0,
        "hbonds_desc": ""
      }
    },
    {
      "index": 12,
      "type": "X",
      "desc_short": "A vs G-C (WC)",
      "desc_long": "///3/1247 vs ///3/1350,///3/1366",
      "A_nt1": {
        "desc": "///3/1247 vs ///3/1350",
        "face_type": "+",
        "hbonds_num": 1,
        "hbonds_desc": "N1-N2(amino)[3.07]"
      },
      "A_nt2": {
        "desc": "///3/1247 vs ///3/1366",
        "face_type": "-",
        "hbonds_num": 0,
        "hbonds_desc": ""
      }
    },
    {
      "index": 13,
      "type": "II",
      "desc_short": "A vs G-C (WC)",
      "desc_long": "///3/1248 vs ///3/1350,///3/1366",
      "A_nt1": {
        "desc": "///3/1248 vs ///3/1350",
        "face_type": "+",
        "hbonds_num": 0,
        "hbonds_desc": ""
      },
      "A_nt2": {
        "desc": "///3/1248 vs ///3/1366",
        "face_type": "-",
        "hbonds_num": 2,
        "hbonds_desc": "O2'(hydroxyl)-O3'[2.96],N3-O2'(hydroxyl)[2.50]"
      }
    },
    {
      "index": 14,
      "type": "I",
      "desc_short": "A vs G-C (WC)",
      "desc_long": "///3/1266 vs ///3/1309,///3/1322",
      "A_nt1": {
        "desc": "///3/1266 vs ///3/1309",
        "face_type": "+",
        "hbonds_num": 2,
        "hbonds_desc": "N1-O2'(hydroxyl)[3.46],N3-N2(amino)[3.58]"
      },
      "A_nt2": {
        "desc": "///3/1266 vs ///3/1322",
        "face_type": "-",
        "hbonds_num": 1,
        "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.94]"
      }
    },
    {
      "index": 15,
      "type": "X",
      "desc_short": "A vs C-G (WC)",
      "desc_long": "///3/1284 vs ///3/1349,///3/1367",
      "A_nt1": {
        "desc": "///3/1284 vs ///3/1349",
        "face_type": "-",
        "hbonds_num": 0,
        "hbonds_desc": ""
      },
      "A_nt2": {
        "desc": "///3/1284 vs ///3/1367",
        "face_type": "+",
        "hbonds_num": 1,
        "hbonds_desc": "N1-N2(amino)[3.01]"
      }
    },
    {
      "index": 16,
      "type": "II",
      "desc_short": "A vs C-G (WC)",
      "desc_long": "///3/1285 vs ///3/1349,///3/1367",
      "A_nt1": {
        "desc": "///3/1285 vs ///3/1349",
        "face_type": "-",
        "hbonds_num": 3,
        "hbonds_desc": "O2'(hydroxyl)-O3'[3.05],O2'(hydroxyl)-O2'(hydroxyl)[2.85],N3-O2'(hydroxyl)[2.74]"
      },
      "A_nt2": {
        "desc": "///3/1285 vs ///3/1367",
        "face_type": "+",
        "hbonds_num": 0,
        "hbonds_desc": ""
      }
    },
    {
      "index": 17,
      "type": "I",
      "desc_short": "A vs U-G (Wobble)",
      "desc_long": "///3/1286 vs ///3/1348,///3/1368",
      "A_nt1": {
        "desc": "///3/1286 vs ///3/1348",
        "face_type": "-",
        "hbonds_num": 0,
        "hbonds_desc": ""
      },
      "A_nt2": {
        "desc": "///3/1286 vs ///3/1368",
        "face_type": "+",
        "hbonds_num": 1,
        "hbonds_desc": "N1-O2'(hydroxyl)[3.12]"
      }
    },
    {
      "index": 18,
      "type": "II",
      "desc_short": "A vs A-U (WC)",
      "desc_long": "///3/1330 vs ///3/943,///3/1232",
      "A_nt1": {
        "desc": "///3/1330 vs ///3/943",
        "face_type": "-",
        "hbonds_num": 2,
        "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.99],N3-O2'(hydroxyl)[2.80]"
      },
      "A_nt2": {
        "desc": "///3/1330 vs ///3/1232",
        "face_type": "+",
        "hbonds_num": 0,
        "hbonds_desc": ""
      }
    },
    {
      "index": 19,
      "type": "I",
      "desc_short": "A vs G-C (WC)",
      "desc_long": "///3/1336 vs ///7/30,///7/40",
      "A_nt1": {
        "desc": "///3/1336 vs ///7/30",
        "face_type": "+",
        "hbonds_num": 2,
        "hbonds_desc": "N1-O2'(hydroxyl)[3.53],N3-N2(amino)[3.16]"
      },
      "A_nt2": {
        "desc": "///3/1336 vs ///7/40",
        "face_type": "-",
        "hbonds_num": 2,
        "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.89],O2'(hydroxyl)-O2(carbonyl)[2.82]"
      }
    }
  ],
  "num_riboseZippers": 7,
  "riboseZippers": [
    {
      "index": 1,
      "num_nts": 4,
      "nts_short": "AGAU",
      "nts_long": "///3/935,///3/936,///3/1372,///3/1373"
    },
    {
      "index": 2,
      "num_nts": 4,
      "nts_short": "AACC",
      "nts_long": "///3/955,///3/956,///3/981,///3/982"
    },
    {
      "index": 3,
      "num_nts": 4,
      "nts_short": "GACC",
      "nts_long": "///3/1012,///3/1013,///3/1214,///3/1215"
    },
    {
      "index": 4,
      "num_nts": 4,
      "nts_short": "CCAA",
      "nts_long": "///3/1093,///3/1094,///3/1166,///3/1167"
    },
    {
      "index": 5,
      "num_nts": 4,
      "nts_short": "AACG",
      "nts_long": "///3/1247,///3/1248,///3/1366,///3/1367"
    },
    {
      "index": 6,
      "num_nts": 4,
      "nts_short": "GACU",
      "nts_long": "///3/1265,///3/1266,///3/1322,///3/1323"
    },
    {
      "index": 7,
      "num_nts": 4,
      "nts_short": "AACG",
      "nts_long": "///3/1284,///3/1285,///3/1349,///3/1350"
    }
  ],
  "num_splayUnits": 39,
  "splayUnits": [
    {
      "index": 1,
      "num_nts": 2,
      "nts_short": "GC",
      "nts_long": "///3/930,///3/931"
    },
    {
      "index": 2,
      "num_nts": 2,
      "nts_short": "UA",
      "nts_long": "///3/954,///3/955"
    },
    {
      "index": 3,
      "num_nts": 2,
      "nts_short": "UU",
      "nts_long": "///3/957,///3/958"
    },
    {
      "index": 4,
      "num_nts": 2,
      "nts_short": "UG",
      "nts_long": "///3/962,///3/963"
    },
    {
      "index": 5,
      "num_nts": 2,
      "nts_short": "AA",
      "nts_long": "///3/965,///3/966"
    },
    {
      "index": 6,
      "num_nts": 3,
      "nts_short": "CGC",
      "nts_long": "///3/967,///3/968,///3/969"
    },
    {
      "index": 7,
      "num_nts": 2,
      "nts_short": "AA",
      "nts_long": "///3/971,///3/972"
    },
    {
      "index": 8,
      "num_nts": 3,
      "nts_short": "GAA",
      "nts_long": "///3/973,///3/974,///3/975"
    },
    {
      "index": 9,
      "num_nts": 2,
      "nts_short": "UU",
      "nts_long": "///3/988,///3/989"
    },
    {
      "index": 10,
      "num_nts": 2,
      "nts_short": "AA",
      "nts_long": "///3/1000,///3/1001"
    },
    {
      "index": 11,
      "num_nts": 2,
      "nts_short": "GA",
      "nts_long": "///3/1010,///3/1011"
    },
    {
      "index": 12,
      "num_nts": 3,
      "nts_short": "GUG",
      "nts_long": "///3/1045,///3/1046,///3/1047"
    },
    {
      "index": 13,
      "num_nts": 3,
      "nts_short": "GCA",
      "nts_long": "///3/1050,///3/1051,///3/1052"
    },
    {
      "index": 14,
      "num_nts": 2,
      "nts_short": "GU",
      "nts_long": "///3/1074,///3/1075"
    },
    {
      "index": 15,
      "num_nts": 2,
      "nts_short": "UU",
      "nts_long": "///3/1082,///3/1083"
    },
    {
      "index": 16,
      "num_nts": 3,
      "nts_short": "AGU",
      "nts_long": "///3/1090,///3/1091,///3/1092"
    },
    {
      "index": 17,
      "num_nts": 2,
      "nts_short": "UG",
      "nts_long": "///3/1123,///3/1124"
    },
    {
      "index": 18,
      "num_nts": 2,
      "nts_short": "UU",
      "nts_long": "///3/1132,///3/1133"
    },
    {
      "index": 19,
      "num_nts": 4,
      "nts_short": "GACA",
      "nts_long": "///3/1163,///3/1164,///3/1165,///3/1166"
    },
    {
      "index": 20,
      "num_nts": 3,
      "nts_short": "GCG",
      "nts_long": "///3/1179,///3/1180,///3/1181"
    },
    {
      "index": 21,
      "num_nts": 2,
      "nts_short": "GA",
      "nts_long": "///3/1187,///3/1188"
    },
    {
      "index": 22,
      "num_nts": 3,
      "nts_short": "CAA",
      "nts_long": "///3/1192,///3/1193,///3/1194"
    },
    {
      "index": 23,
      "num_nts": 3,
      "nts_short": "CAU",
      "nts_long": "///3/1197,///3/1198,///3/1199"
    },
    {
      "index": 24,
      "num_nts": 2,
      "nts_short": "UU",
      "nts_long": "///3/1208,///3/1209"
    },
    {
      "index": 25,
      "num_nts": 2,
      "nts_short": "CG",
      "nts_long": "///3/1211,///3/1212"
    },
    {
      "index": 26,
      "num_nts": 2,
      "nts_short": "UA",
      "nts_long": "///3/1221,///3/1222"
    },
    {
      "index": 27,
      "num_nts": 2,
      "nts_short": "CA",
      "nts_long": "///3/1234,///3/1235"
    },
    {
      "index": 28,
      "num_nts": 3,
      "nts_short": "AUG",
      "nts_long": "///3/1236,///3/1237,///3/1238"
    },
    {
      "index": 29,
      "num_nts": 3,
      "nts_short": "UUG",
      "nts_long": "///3/1253,///3/1254,///3/1255"
    },
    {
      "index": 30,
      "num_nts": 2,
      "nts_short": "GC",
      "nts_long": "///3/1263,///3/1264"
    },
    {
      "index": 31,
      "num_nts": 3,
      "nts_short": "AAU",
      "nts_long": "///3/1276,///3/1277,///3/1278"
    },
    {
      "index": 32,
      "num_nts": 3,
      "nts_short": "UCC",
      "nts_long": "///3/1298,///3/1299,///3/1300"
    },
    {
      "index": 33,
      "num_nts": 2,
      "nts_short": "AC",
      "nts_long": "///3/1316,///3/1317"
    },
    {
      "index": 34,
      "num_nts": 2,
      "nts_short": "CG",
      "nts_long": "///3/1319,///3/1320"
    },
    {
      "index": 35,
      "num_nts": 2,
      "nts_short": "UC",
      "nts_long": "///3/1332,///3/1333"
    },
    {
      "index": 36,
      "num_nts": 2,
      "nts_short": "GG",
      "nts_long": "///3/1334,///3/1335"
    },
    {
      "index": 37,
      "num_nts": 2,
      "nts_short": "CA",
      "nts_long": "///3/1356,///3/1357"
    },
    {
      "index": 38,
      "num_nts": 2,
      "nts_short": "AU",
      "nts_long": "///3/1360,///3/1361"
    },
    {
      "index": 39,
      "num_nts": 2,
      "nts_short": "AC",
      "nts_long": "///3/1374,///3/1375"
    }
  ],
  "pseudoknot_order": 1,
  "pseudoknot_nts": [
    {
      "index": 1,
      "symbols": "[]",
      "num_nts": 4,
      "nts_short": "AAUU",
      "nts_long": "///7/35,///7/37,///9/1,///9/2"
    }
  ],
  "dbn": {
    "all_chains": {
      "num_nts": 477,
      "num_chars": 480,
      "bseq": "GGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGCCUUGACAUACUAGAAACUUUCCAGAGAUGGAUUGGU&GAAUCUAGAUACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUUUCCUUACUUGCCAGCAUUUCGGAUGGGAACUUUAAGGAUACUGCCAGUGACAAACUGGAGGAAGGCGGGGACGACGUCAAGUCAUCAUGGCCCUUACGGCCAGGGCUACACACGUGCUACAAUGGUCGGUACAAAGGGUUGCUACACAGCGAUGUGAUGCUAAUCUCAAAAAGCCGAUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGCGGAUCAGAAUGCCGCGGUGAAUACGUUCCCGGG&GUCGGGCUCAUAACCCGAAG&UUUU",
      "sstr": "...((((.((..(((((..((((((((((......((........))..........(((((((..(...(((((....(..((((....))))..)..&.....))).))).((.(((...((((((.(....(((((((((....)))...(((......)))...)))))).....((((.((((((....((..(((.....))))).....))))))..(..(((((.....))))).....)..)))).....).).)))...)).)))))....)))))))...)).)))))))).(...(((((((.....(((..((..((((....))))..))....))).....)))))))......(....(((((((........)))))))....)..)..))))).....(((((((.........)))))))......))...))))&.(((((...[.[.)))))..&]]..",
      "form": ".AAAA...A..AAA.AA.AAAAAAAA..A.....AA....Z....A...........AAAA.A..Z.A.AA......A...AAAAA.....A.A..A.-&....AAA....A.A..AA....A.AAA.....A.A.AA.AA.A....AA....A..A.B...AAA...A.AAA...AA.AAAA.AAAAA....AA.AAAA...Z.....AA..A.AA.A.A.....AAAAA....A.AAAA..........AAAA..A.A...AA....AA..AAAA....A...AA.A.....AAAA.AAAA....AAAAAA.A..AA.A...A...AAAA....AAA.A.A.....AA....A.AAAA.............AAAA.A...........AAAAA...........A.AA....A.AAAAAA.B.......AA.AA.A..AAA..A...AAA.-&AAAAA.A...A..AAAAA.-&.A.-"
    },
    "chain_3": {
      "num_nts": 453,
      "num_chars": 454,
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      "atom2_id": "///t/52/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1747,
      "atom1_serNum": 16442,
      "atom2_serNum": 16458,
      "donAcc_type": "acceptable",
      "distance": 3.190,
      "atom1_id": "///t/33/OG1",
      "atom2_id": "///t/35/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1748,
      "atom1_serNum": 16463,
      "atom2_serNum": 16464,
      "donAcc_type": "acceptable",
      "distance": 2.320,
      "atom1_id": "///t/35/OG",
      "atom2_id": "///t/36/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1749,
      "atom1_serNum": 16463,
      "atom2_serNum": 16475,
      "donAcc_type": "acceptable",
      "distance": 3.162,
      "atom1_id": "///t/35/OG",
      "atom2_id": "///t/37/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1750,
      "atom1_serNum": 16463,
      "atom2_serNum": 16486,
      "donAcc_type": "acceptable",
      "distance": 3.310,
      "atom1_id": "///t/35/OG",
      "atom2_id": "///t/38/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1751,
      "atom1_serNum": 16467,
      "atom2_serNum": 16748,
      "donAcc_type": "standard",
      "distance": 2.676,
      "atom1_id": "///t/36/O",
      "atom2_id": "///t/72/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1752,
      "atom1_serNum": 16474,
      "atom2_serNum": 16751,
      "donAcc_type": "standard",
      "distance": 2.722,
      "atom1_id": "///t/36/NH2",
      "atom2_id": "///t/72/O",
      "atom_pair": "N:O",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1753,
      "atom1_serNum": 16474,
      "atom2_serNum": 16775,
      "donAcc_type": "standard",
      "distance": 2.035,
      "atom1_id": "///t/36/NH2",
      "atom2_id": "///t/75/O",
      "atom_pair": "N:O",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1754,
      "atom1_serNum": 16478,
      "atom2_serNum": 16739,
      "donAcc_type": "standard",
      "distance": 2.766,
      "atom1_id": "///t/37/O",
      "atom2_id": "///t/70/NZ",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1755,
      "atom1_serNum": 16489,
      "atom2_serNum": 16740,
      "donAcc_type": "standard",
      "distance": 2.718,
      "atom1_id": "///t/38/O",
      "atom2_id": "///t/71/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1756,
      "atom1_serNum": 16500,
      "atom2_serNum": 16724,
      "donAcc_type": "standard",
      "distance": 2.524,
      "atom1_id": "///t/40/N",
      "atom2_id": "///t/69/O",
      "atom_pair": "N:O",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1757,
      "atom1_serNum": 16503,
      "atom2_serNum": 16717,
      "donAcc_type": "standard",
      "distance": 3.427,
      "atom1_id": "///t/40/O",
      "atom2_id": "///t/68/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1758,
      "atom1_serNum": 16511,
      "atom2_serNum": 16531,
      "donAcc_type": "standard",
      "distance": 2.925,
      "atom1_id": "///t/41/O",
      "atom2_id": "///t/44/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1759,
      "atom1_serNum": 16534,
      "atom2_serNum": 16553,
      "donAcc_type": "standard",
      "distance": 3.086,
      "atom1_id": "///t/44/O",
      "atom2_id": "///t/47/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1760,
      "atom1_serNum": 16549,
      "atom2_serNum": 16672,
      "donAcc_type": "standard",
      "distance": 2.898,
      "atom1_id": "///t/46/N",
      "atom2_id": "///t/62/O",
      "atom_pair": "N:O",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1761,
      "atom1_serNum": 16556,
      "atom2_serNum": 16669,
      "donAcc_type": "standard",
      "distance": 2.706,
      "atom1_id": "///t/47/O",
      "atom2_id": "///t/62/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1762,
      "atom1_serNum": 16568,
      "atom2_serNum": 16657,
      "donAcc_type": "standard",
      "distance": 2.918,
      "atom1_id": "///t/49/N",
      "atom2_id": "///t/60/O",
      "atom_pair": "N:O",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1763,
      "atom1_serNum": 16571,
      "atom2_serNum": 16582,
      "donAcc_type": "standard",
      "distance": 3.014,
      "atom1_id": "///t/49/O",
      "atom2_id": "///t/51/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1764,
      "atom1_serNum": 16571,
      "atom2_serNum": 16643,
      "donAcc_type": "questionable",
      "distance": 3.124,
      "atom1_id": "///t/49/O",
      "atom2_id": "///t/58/O",
      "atom_pair": "O:O",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1765,
      "atom1_serNum": 16571,
      "atom2_serNum": 16654,
      "donAcc_type": "standard",
      "distance": 2.880,
      "atom1_id": "///t/49/O",
      "atom2_id": "///t/60/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1766,
      "atom1_serNum": 16579,
      "atom2_serNum": 16581,
      "donAcc_type": "acceptable",
      "distance": 2.559,
      "atom1_id": "///t/50/O",
      "atom2_id": "///t/50/OG",
      "atom_pair": "O:O",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1767,
      "atom1_serNum": 16579,
      "atom2_serNum": 16636,
      "donAcc_type": "acceptable",
      "distance": 3.192,
      "atom1_id": "///t/50/O",
      "atom2_id": "///t/57/ND1",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1768,
      "atom1_serNum": 16585,
      "atom2_serNum": 16640,
      "donAcc_type": "standard",
      "distance": 2.849,
      "atom1_id": "///t/51/O",
      "atom2_id": "///t/58/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1769,
      "atom1_serNum": 16595,
      "atom2_serNum": 16607,
      "donAcc_type": "acceptable",
      "distance": 2.768,
      "atom1_id": "///t/52/ND1",
      "atom2_id": "///t/54/N",
      "atom_pair": "N:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1770,
      "atom1_serNum": 16599,
      "atom2_serNum": 16625,
      "donAcc_type": "standard",
      "distance": 3.160,
      "atom1_id": "///t/53/N",
      "atom2_id": "///t/56/O",
      "atom_pair": "N:O",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1771,
      "atom1_serNum": 16605,
      "atom2_serNum": 16622,
      "donAcc_type": "standard",
      "distance": 2.973,
      "atom1_id": "///t/53/OD1",
      "atom2_id": "///t/56/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1772,
      "atom1_serNum": 16664,
      "atom2_serNum": 16676,
      "donAcc_type": "standard",
      "distance": 2.782,
      "atom1_id": "///t/61/O",
      "atom2_id": "///t/63/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1773,
      "atom1_serNum": 16664,
      "atom2_serNum": 16681,
      "donAcc_type": "acceptable",
      "distance": 2.829,
      "atom1_id": "///t/61/O",
      "atom2_id": "///t/63/OG1",
      "atom_pair": "O:O",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1774,
      "atom1_serNum": 16683,
      "atom2_serNum": 16690,
      "donAcc_type": "standard",
      "distance": 2.708,
      "atom1_id": "///t/64/N",
      "atom2_id": "///t/64/OE1",
      "atom_pair": "N:O",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1775,
      "atom1_serNum": 16731,
      "atom2_serNum": 16760,
      "donAcc_type": "standard",
      "distance": 2.427,
      "atom1_id": "///t/70/N",
      "atom2_id": "///t/73/OE2",
      "atom_pair": "N:O",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1776,
      "atom1_serNum": 16743,
      "atom2_serNum": 16761,
      "donAcc_type": "standard",
      "distance": 3.041,
      "atom1_id": "///t/71/O",
      "atom2_id": "///t/74/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1777,
      "atom1_serNum": 16751,
      "atom2_serNum": 16772,
      "donAcc_type": "standard",
      "distance": 3.147,
      "atom1_id": "///t/72/O",
      "atom2_id": "///t/75/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1778,
      "atom1_serNum": 16775,
      "atom2_serNum": 16784,
      "donAcc_type": "standard",
      "distance": 3.115,
      "atom1_id": "///t/75/O",
      "atom2_id": "///t/77/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 1779,
      "atom1_serNum": 16794,
      "atom2_serNum": 16809,
      "donAcc_type": "standard",
      "distance": 3.416,
      "atom1_id": "///t/78/O",
      "atom2_id": "///t/80/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    }
  ],
  "refCoords": {
    "purine": [
      "   12 ATOMS,    12 BONDS",
      "    1 N      -2.2500   5.0000   0.4000",
      "    2 N      -2.2500  -0.5000   0.4000",
      "    3 N      -2.2500  -0.5000  -0.4000",
      "    4 N      -2.2500   5.0000  -0.4000",
      "    5 C       1.2500   5.0000   0.4000",
      "    6 C       1.2500  -0.5000   0.4000",
      "    7 C       1.2500  -0.5000  -0.4000",
      "    8 C       1.2500   5.0000  -0.4000",
      "    9 C      -2.2500   5.0000   0.4000",
      "   10 C      -2.2500  -0.5000   0.4000",
      "   11 C      -2.2500  -0.5000  -0.4000",
      "   12 C      -2.2500   5.0000  -0.4000",
      "    1     1     2",
      "    2     2     3",
      "    3     3     4",
      "    4     4     1",
      "    5     5     6",
      "    6     6     7",
      "    7     7     8",
      "    8     5     8",
      "    9     9     5",
      "   10    10     6",
      "   11    11     7",
      "   12    12     8"
    ],
    "pyrimidine": [
      "   12 ATOMS,    12 BONDS",
      "    1 N      -2.2500   5.0000   0.4000",
      "    2 N      -2.2500   1.0000   0.4000",
      "    3 N      -2.2500   1.0000  -0.4000",
      "    4 N      -2.2500   5.0000  -0.4000",
      "    5 C       1.2500   5.0000   0.4000",
      "    6 C       1.2500   1.0000   0.4000",
      "    7 C       1.2500   1.0000  -0.4000",
      "    8 C       1.2500   5.0000  -0.4000",
      "    9 C      -2.2500   5.0000   0.4000",
      "   10 C      -2.2500   1.0000   0.4000",
      "   11 C      -2.2500   1.0000  -0.4000",
      "   12 C      -2.2500   5.0000  -0.4000",
      "    1     1     2",
      "    2     2     3",
      "    3     3     4",
      "    4     4     1",
      "    5     5     6",
      "    6     6     7",
      "    7     7     8",
      "    8     5     8",
      "    9     9     5",
      "   10    10     6",
      "   11    11     7",
      "   12    12     8"
    ],
    "wc_pair": [
      "   12 ATOMS,    12 BONDS",
      "    1 N      -2.2500   5.0000   0.4000",
      "    2 N      -2.2500  -5.0000   0.4000",
      "    3 N      -2.2500  -5.0000  -0.4000",
      "    4 N      -2.2500   5.0000  -0.4000",
      "    5 C       2.2500   5.0000   0.4000",
      "    6 C       2.2500  -5.0000   0.4000",
      "    7 C       2.2500  -5.0000  -0.4000",
      "    8 C       2.2500   5.0000  -0.4000",
      "    9 C      -2.2500   5.0000   0.4000",
      "   10 C      -2.2500  -5.0000   0.4000",
      "   11 C      -2.2500  -5.0000  -0.4000",
      "   12 C      -2.2500   5.0000  -0.4000",
      "    1     1     2",
      "    2     2     3",
      "    3     3     4",
      "    4     4     1",
      "    5     5     6",
      "    6     6     7",
      "    7     7     8",
      "    8     5     8",
      "    9     9     5",
      "   10    10     6",
      "   11    11     7",
      "   12    12     8"
    ]
  },
  "metadata": {
    "license": "http://innovation.columbia.edu/technologies/CU20391",
    "url": "http://x3dna.org/",
    "url_alt": "http://home.x3dna.org/",
    "forum": "http://forum.x3dna.org/",
    "citation": "Lu et al. (2015). 'DSSR: an integrated software tool for dissecting the spatial structure of RNA.' Nucleic Acids Res., 43(21):e142 [doi:10.1093/nar/gkv716].",
    "str_id": "6ytf",
    "num_aaChains": 7,
    "aaChains": "d=210,h=117,j=127,k=100,n=115,o=100,t=83",
    "num_naChains": 3,
    "naChains": "3=453,7=20,9=4",
    "num_atoms": 16906,
    "num_waters": 0,
    "num_metals": 24,
    "metals_desc": "Mg=24",
    "num_notes": 52,
    "notes": [
      {
        "Aminors": "A-minor interactions (including types I and II)"
      },
      {
        "Cstem_index": "stem index of the 'Canonical' helix in k-turn"
      },
      {
        "Cstem_pair": "Cstem bp delineating the k-turn internal loop"
      },
      {
        "Dp": "perpendicular distance of the 3' P atom to the glycosidic bond"
      },
      {
        "GA_pair": "sheared G-A pair in k-turn"
      },
      {
        "HtypePknot": "H-type pseudoknot"
      },
      {
        "Kturn": "kink-turn (k-turn)"
      },
      {
        "LW": "Leontis-Westhof"
      },
      {
        "NCstem_index": "stem index of the 'Non-Canonical' helix in k-turn"
      },
      {
        "NCstem_pair": "NCstem bp delineating the k-turn internal loop"
      },
      {
        "Uturn": "U-turn of the UNR- or GNRA-type"
      },
      {
        "aa": "amino acid"
      },
      {
        "atom_pair": "symbols of the two atoms involved in an H-bond"
      },
      {
        "auxfiles": "auxiliary files"
      },
      {
        "glyco_bond": "conformation of base related to sugar (syn or anti)"
      },
      {
        "bb_type": "backbone conformation, BI or BII"
      },
      {
        "bending_angle": "angle between two helical axes"
      },
      {
        "bp": "base pair"
      },
      {
        "bseq": "base sequence in one-letter code"
      },
      {
        "bulge": "bulge loop"
      },
      {
        "coaxStacks": "coaxial stacking of stems within a helix"
      },
      {
        "dbn": "dot bracket notation"
      },
      {
        "desc": "description"
      },
      {
        "donAcc_type": "donor/acceptor type of the atom pair in an H-bond"
      },
      {
        "epsilon_zeta": "difference between epsilon and zeta torsion angles"
      },
      {
        "hairpin": "hairpin loop"
      },
      {
        "hbond": "hydrogen bond (H-bond)"
      },
      {
        "helix": "defined by base-stacking interactions, regardless of bp type and backbone connectivity"
      },
      {
        "id": "identifier"
      },
      {
        "iloop": "internal loop"
      },
      {
        "index": "serial number"
      },
      {
        "isoCanonPairs": "isolated canonical pairs"
      },
      {
        "junction": "(multi-branched) junction loop"
      },
      {
        "kissingLoop": "kissing loop"
      },
      {
        "multiplet": "3+ bases in a coplanar geometry"
      },
      {
        "na": "nucleic acid"
      },
      {
        "nonPair": "two nts not forming a pair, but with H-bonding/stacking interactions"
      },
      {
        "nonStack": "nucleotide not involved in stacking interactions"
      },
      {
        "nt": "nucleotide"
      },
      {
        "num": "number"
      },
      {
        "oArea": "overlap areas between two bases, including exocyclic atoms"
      },
      {
        "oArea_ring": "overlap areas between two bases, including only ring atoms"
      },
      {
        "phosContacts": "H-bonding and atom-capping interactions involving a phosphate"
      },
      {
        "residue_pair": "types of the two residues involved in an H-bond"
      },
      {
        "rmsd": "root-mean-squares deviation"
      },
      {
        "serNum": "serial number"
      },
      {
        "ssSegments": "single-stranded segments not involved in loops"
      },
      {
        "ssZp": "Z-coordinate of the 3' phosphorus atom with reference to the 5' base plane"
      },
      {
        "sstr": "secondary structure in dbn"
      },
      {
        "stem": "helix consisting of only canonical pairs, with a continuous backbone"
      },
      {
        "str_id": "structure identifier, derived from inpfile with extension removed"
      },
      {
        "vert_dist": "vertical distance from an atom to a base plane"
      }
    ],
    "num_auxfiles": 20,
    "auxfiles": [
      {
        "index": 1,
        "name": "dssr-pairs.pdb",
        "desc": "an ensemble of base pairs"
      },
      {
        "index": 2,
        "name": "dssr-multiplets.pdb",
        "desc": "an ensemble of multiplets"
      },
      {
        "index": 3,
        "name": "dssr-stems.pdb",
        "desc": "an ensemble of stems"
      },
      {
        "index": 4,
        "name": "dssr-helices.pdb",
        "desc": "an ensemble of helices (coaxial stacking)"
      },
      {
        "index": 5,
        "name": "dssr-hairpins.pdb",
        "desc": "an ensemble of hairpin loops"
      },
      {
        "index": 6,
        "name": "dssr-bulges.pdb",
        "desc": "an ensemble of bulges"
      },
      {
        "index": 7,
        "name": "dssr-iloops.pdb",
        "desc": "an ensemble of internal loops"
      },
      {
        "index": 8,
        "name": "dssr-junctions.pdb",
        "desc": "an ensemble of junctions (multi-branch)"
      },
      {
        "index": 9,
        "name": "dssr-2ndstrs.bpseq",
        "desc": "secondary structure in bpseq format"
      },
      {
        "index": 10,
        "name": "dssr-2ndstrs.ct",
        "desc": "secondary structure in connectivity table format"
      },
      {
        "index": 11,
        "name": "dssr-2ndstrs.dbn",
        "desc": "secondary structure in dot-bracket notation"
      },
      {
        "index": 12,
        "name": "dssr-torsions.txt",
        "desc": "backbone torsion angles and suite names"
      },
      {
        "index": 13,
        "name": "dssr-splays.pdb",
        "desc": "an ensemble of splayed-apart units"
      },
      {
        "index": 14,
        "name": "dssr-Aminors.pdb",
        "desc": "an ensemble of A minor motifs (types I and II)"
      },
      {
        "index": 15,
        "name": "dssr-stacks.pdb",
        "desc": "an ensemble of base stacks"
      },
      {
        "index": 16,
        "name": "dssr-atom2bases.pdb",
        "desc": "an ensemble of atom-base stacking interactions"
      },
      {
        "index": 17,
        "name": "dssr-rotmat.txt",
        "desc": "position vector and rotation matrix"
      },
      {
        "index": 18,
        "name": "dssr-viewV.pdb",
        "desc": "vertical view of the principal moment of inertia"
      },
      {
        "index": 19,
        "name": "dssr-viewH.pdb",
        "desc": "horizontal view of the principal moment of inertia"
      },
      {
        "index": 20,
        "name": "dssr-viewT.pdb",
        "desc": "top view of the principal moment of inertia"
      }
    ],
    "time_used": "999"
  }
}
