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      ]
    },
    {
      "index": 5,
      "type": "hairpin loop",
      "bridging_nts": [
        7
      ],
      "stem_indices": [
        7
      ],
      "summary": "[1] 7 [G.31 G.39] 5",
      "num_nts": 9,
      "nts_short": "CUUGCCAAG",
      "nts_long": "///G/31,///G/32,///G/33,///G/34,///G/35,///G/36,///G/37,///G/38,///G/39",
      "num_stems": 1,
      "bridges": [
        {
          "index": 1,
          "num_nts": 7,
          "nts_short": "UUGCCAA",
          "nts_long": "///G/32,///G/33,///G/34,///G/35,///G/36,///G/37,///G/38"
        }
      ]
    },
    {
      "index": 6,
      "type": "hairpin loop",
      "bridging_nts": [
        7
      ],
      "stem_indices": [
        8
      ],
      "summary": "[1] 7 [G.53 G.61] 5",
      "num_nts": 9,
      "nts_short": "GUUCGAGUC",
      "nts_long": "///G/53,///G/54,///G/55,///G/56,///G/57,///G/58,///G/59,///G/60,///G/61",
      "num_stems": 1,
      "bridges": [
        {
          "index": 1,
          "num_nts": 7,
          "nts_short": "UUCGAGU",
          "nts_long": "///G/54,///G/55,///G/56,///G/57,///G/58,///G/59,///G/60"
        }
      ]
    },
    {
      "index": 7,
      "type": "hairpin loop",
      "bridging_nts": [
        8
      ],
      "stem_indices": [
        10
      ],
      "summary": "[1] 8 [H.13 H.22] 4",
      "num_nts": 10,
      "nts_short": "CAGUUGGUAG",
      "nts_long": "///H/13,///H/14,///H/15,///H/16,///H/17,///H/18,///H/19,///H/20,///H/21,///H/22",
      "num_stems": 1,
      "bridges": [
        {
          "index": 1,
          "num_nts": 8,
          "nts_short": "AGUUGGUA",
          "nts_long": "///H/14,///H/15,///H/16,///H/17,///H/18,///H/19,///H/20,///H/21"
        }
      ]
    },
    {
      "index": 8,
      "type": "hairpin loop",
      "bridging_nts": [
        7
      ],
      "stem_indices": [
        12
      ],
      "summary": "[1] 7 [H.53 H.61] 5",
      "num_nts": 9,
      "nts_short": "GUUCGAGUC",
      "nts_long": "///H/53,///H/54,///H/55,///H/56,///H/57,///H/58,///H/59,///H/60,///H/61",
      "num_stems": 1,
      "bridges": [
        {
          "index": 1,
          "num_nts": 7,
          "nts_short": "UUCGAGU",
          "nts_long": "///H/54,///H/55,///H/56,///H/57,///H/58,///H/59,///H/60"
        }
      ]
    },
    {
      "index": 9,
      "type": "hairpin loop",
      "bridging_nts": [
        8
      ],
      "stem_indices": [
        14
      ],
      "summary": "[1] 8 [E.13 E.22] 4",
      "num_nts": 10,
      "nts_short": "CAGUUGGUAG",
      "nts_long": "///E/13,///E/14,///E/15,///E/16,///E/17,///E/18,///E/19,///E/20,///E/21,///E/22",
      "num_stems": 1,
      "bridges": [
        {
          "index": 1,
          "num_nts": 8,
          "nts_short": "AGUUGGUA",
          "nts_long": "///E/14,///E/15,///E/16,///E/17,///E/18,///E/19,///E/20,///E/21"
        }
      ]
    },
    {
      "index": 10,
      "type": "hairpin loop",
      "bridging_nts": [
        7
      ],
      "stem_indices": [
        16
      ],
      "summary": "[1] 7 [E.53 E.61] 5",
      "num_nts": 9,
      "nts_short": "GUUCGAGUC",
      "nts_long": "///E/53,///E/54,///E/55,///E/56,///E/57,///E/58,///E/59,///E/60,///E/61",
      "num_stems": 1,
      "bridges": [
        {
          "index": 1,
          "num_nts": 7,
          "nts_short": "UUCGAGU",
          "nts_long": "///E/54,///E/55,///E/56,///E/57,///E/58,///E/59,///E/60"
        }
      ]
    }
  ],
  "num_junctions": 4,
  "junctions": [
    {
      "index": 1,
      "type": "4-way junction",
      "bridging_nts": [
        2,
        1,
        5,
        0
      ],
      "stem_indices": [
        1,
        2,
        3,
        4
      ],
      "summary": "[4] 2 1 5 0 [F.7 F.66 F.10 F.25 F.27 F.43 F.49 F.65] 7 4 6 5",
      "num_nts": 16,
      "nts_short": "AUAGCACGGGGUCGUU",
      "nts_long": "///F/7,///F/8,///F/9,///F/10,///F/25,///F/26,///F/27,///F/43,///F/44,///F/45,///F/46,///F/47,///F/48,///F/49,///F/65,///F/66",
      "num_stems": 4,
      "bridges": [
        {
          "index": 1,
          "num_nts": 2,
          "nts_short": "UA",
          "nts_long": "///F/8,///F/9"
        },
        {
          "index": 2,
          "num_nts": 1,
          "nts_short": "A",
          "nts_long": "///F/26"
        },
        {
          "index": 3,
          "num_nts": 5,
          "nts_short": "GGGUC",
          "nts_long": "///F/44,///F/45,///F/46,///F/47,///F/48"
        },
        {
          "index": 4,
          "num_nts": 0,
          "nts_short": "",
          "nts_long": ""
        }
      ]
    },
    {
      "index": 2,
      "type": "4-way junction",
      "bridging_nts": [
        2,
        1,
        5,
        0
      ],
      "stem_indices": [
        5,
        6,
        7,
        8
      ],
      "summary": "[4] 2 1 5 0 [G.7 G.66 G.10 G.25 G.27 G.43 G.49 G.65] 7 4 5 5",
      "num_nts": 16,
      "nts_short": "AUAGCACGGGGUCGUU",
      "nts_long": "///G/7,///G/8,///G/9,///G/10,///G/25,///G/26,///G/27,///G/43,///G/44,///G/45,///G/46,///G/47,///G/48,///G/49,///G/65,///G/66",
      "num_stems": 4,
      "bridges": [
        {
          "index": 1,
          "num_nts": 2,
          "nts_short": "UA",
          "nts_long": "///G/8,///G/9"
        },
        {
          "index": 2,
          "num_nts": 1,
          "nts_short": "A",
          "nts_long": "///G/26"
        },
        {
          "index": 3,
          "num_nts": 5,
          "nts_short": "GGGUC",
          "nts_long": "///G/44,///G/45,///G/46,///G/47,///G/48"
        },
        {
          "index": 4,
          "num_nts": 0,
          "nts_short": "",
          "nts_long": ""
        }
      ]
    },
    {
      "index": 3,
      "type": "4-way junction",
      "bridging_nts": [
        2,
        1,
        5,
        0
      ],
      "stem_indices": [
        9,
        10,
        11,
        12
      ],
      "summary": "[4] 2 1 5 0 [H.7 H.66 H.10 H.25 H.27 H.43 H.49 H.65] 7 4 5 5",
      "num_nts": 16,
      "nts_short": "AUAGCACGGGGUCGUU",
      "nts_long": "///H/7,///H/8,///H/9,///H/10,///H/25,///H/26,///H/27,///H/43,///H/44,///H/45,///H/46,///H/47,///H/48,///H/49,///H/65,///H/66",
      "num_stems": 4,
      "bridges": [
        {
          "index": 1,
          "num_nts": 2,
          "nts_short": "UA",
          "nts_long": "///H/8,///H/9"
        },
        {
          "index": 2,
          "num_nts": 1,
          "nts_short": "A",
          "nts_long": "///H/26"
        },
        {
          "index": 3,
          "num_nts": 5,
          "nts_short": "GGGUC",
          "nts_long": "///H/44,///H/45,///H/46,///H/47,///H/48"
        },
        {
          "index": 4,
          "num_nts": 0,
          "nts_short": "",
          "nts_long": ""
        }
      ]
    },
    {
      "index": 4,
      "type": "4-way junction",
      "bridging_nts": [
        2,
        1,
        5,
        0
      ],
      "stem_indices": [
        13,
        14,
        15,
        16
      ],
      "summary": "[4] 2 1 5 0 [E.7 E.66 E.10 E.25 E.27 E.43 E.49 E.65] 7 4 5 5",
      "num_nts": 16,
      "nts_short": "AUAGCACGGGGUCGUU",
      "nts_long": "///E/7,///E/8,///E/9,///E/10,///E/25,///E/26,///E/27,///E/43,///E/44,///E/45,///E/46,///E/47,///E/48,///E/49,///E/65,///E/66",
      "num_stems": 4,
      "bridges": [
        {
          "index": 1,
          "num_nts": 2,
          "nts_short": "UA",
          "nts_long": "///E/8,///E/9"
        },
        {
          "index": 2,
          "num_nts": 1,
          "nts_short": "A",
          "nts_long": "///E/26"
        },
        {
          "index": 3,
          "num_nts": 5,
          "nts_short": "GGGUC",
          "nts_long": "///E/44,///E/45,///E/46,///E/47,///E/48"
        },
        {
          "index": 4,
          "num_nts": 0,
          "nts_short": "",
          "nts_long": ""
        }
      ]
    }
  ],
  "num_ssSegments": 6,
  "ssSegments": [
    {
      "index": 1,
      "num_nts": 4,
      "nts_short": "UCCA",
      "nts_long": "///F/73,///F/74,///F/75,///F/76"
    },
    {
      "index": 2,
      "num_nts": 4,
      "nts_short": "UCCA",
      "nts_long": "///G/73,///G/74,///G/75,///G/76"
    },
    {
      "index": 3,
      "is_broken": true,
      "num_nts": 4,
      "nts_short": "UUAA",
      "nts_long": "///H/32,///H/33,///H/37,///H/38"
    },
    {
      "index": 4,
      "num_nts": 3,
      "nts_short": "UCC",
      "nts_long": "///H/73,///H/74,///H/75"
    },
    {
      "index": 5,
      "is_broken": true,
      "num_nts": 4,
      "nts_short": "UUAA",
      "nts_long": "///E/32,///E/33,///E/37,///E/38"
    },
    {
      "index": 6,
      "num_nts": 4,
      "nts_short": "UCCA",
      "nts_long": "///E/73,///E/74,///E/75,///E/76"
    }
  ],
  "num_kissingLoops": 4,
  "kissingLoops": [
    {
      "index": 1,
      "stem_index": -4,
      "is_isoCanonPair": true,
      "hairpin_indices": [
        9,
        10
      ]
    },
    {
      "index": 2,
      "stem_index": -3,
      "is_isoCanonPair": true,
      "hairpin_indices": [
        7,
        8
      ]
    },
    {
      "index": 3,
      "stem_index": -2,
      "is_isoCanonPair": true,
      "hairpin_indices": [
        4,
        6
      ]
    },
    {
      "index": 4,
      "stem_index": -1,
      "is_isoCanonPair": true,
      "hairpin_indices": [
        1,
        3
      ]
    }
  ],
  "num_Aminors": 1,
  "Aminors": [
    {
      "index": 1,
      "type": "X",
      "desc_short": "A vs U-A (~Wobble)",
      "desc_long": "///E/38 vs ///E/32,///E/37",
      "A_nt1": {
        "desc": "///E/38 vs ///E/32",
        "face_type": "-",
        "hbonds_num": 1,
        "hbonds_desc": "N6(amino)-O2(carbonyl)[3.37]"
      },
      "A_nt2": {
        "desc": "///E/38 vs ///E/37",
        "face_type": "+",
        "hbonds_num": 2,
        "hbonds_desc": "O4'-O2'(hydroxyl)[3.40],N7*N3[2.71]"
      }
    }
  ],
  "num_splayUnits": 26,
  "splayUnits": [
    {
      "index": 1,
      "num_nts": 2,
      "nts_short": "AU",
      "nts_long": "///F/7,///F/8"
    },
    {
      "index": 2,
      "num_nts": 2,
      "nts_short": "GU",
      "nts_long": "///F/15,///F/16"
    },
    {
      "index": 3,
      "num_nts": 2,
      "nts_short": "UG",
      "nts_long": "///F/17,///F/18"
    },
    {
      "index": 4,
      "num_nts": 3,
      "nts_short": "GUA",
      "nts_long": "///F/19,///F/20,///F/21"
    },
    {
      "index": 5,
      "num_nts": 4,
      "nts_short": "GUCG",
      "nts_long": "///F/46,///F/47,///F/48,///F/49"
    },
    {
      "index": 6,
      "num_nts": 2,
      "nts_short": "UC",
      "nts_long": "///F/60,///F/61"
    },
    {
      "index": 7,
      "num_nts": 2,
      "nts_short": "CA",
      "nts_long": "///F/75,///F/76"
    },
    {
      "index": 8,
      "num_nts": 2,
      "nts_short": "AU",
      "nts_long": "///G/7,///G/8"
    },
    {
      "index": 9,
      "num_nts": 2,
      "nts_short": "GU",
      "nts_long": "///G/15,///G/16"
    },
    {
      "index": 10,
      "num_nts": 2,
      "nts_short": "UG",
      "nts_long": "///G/17,///G/18"
    },
    {
      "index": 11,
      "num_nts": 2,
      "nts_short": "UA",
      "nts_long": "///G/20,///G/21"
    },
    {
      "index": 12,
      "num_nts": 2,
      "nts_short": "UU",
      "nts_long": "///G/32,///G/33"
    },
    {
      "index": 13,
      "num_nts": 4,
      "nts_short": "GUCG",
      "nts_long": "///G/46,///G/47,///G/48,///G/49"
    },
    {
      "index": 14,
      "num_nts": 2,
      "nts_short": "CA",
      "nts_long": "///G/75,///G/76"
    },
    {
      "index": 15,
      "num_nts": 2,
      "nts_short": "AU",
      "nts_long": "///H/7,///H/8"
    },
    {
      "index": 16,
      "num_nts": 2,
      "nts_short": "GU",
      "nts_long": "///H/15,///H/16"
    },
    {
      "index": 17,
      "num_nts": 2,
      "nts_short": "UG",
      "nts_long": "///H/17,///H/18"
    },
    {
      "index": 18,
      "num_nts": 3,
      "nts_short": "GUA",
      "nts_long": "///H/19,///H/20,///H/21"
    },
    {
      "index": 19,
      "num_nts": 2,
      "nts_short": "CG",
      "nts_long": "///H/48,///H/49"
    },
    {
      "index": 20,
      "num_nts": 2,
      "nts_short": "UC",
      "nts_long": "///H/60,///H/61"
    },
    {
      "index": 21,
      "num_nts": 2,
      "nts_short": "AU",
      "nts_long": "///E/7,///E/8"
    },
    {
      "index": 22,
      "num_nts": 2,
      "nts_short": "GU",
      "nts_long": "///E/15,///E/16"
    },
    {
      "index": 23,
      "num_nts": 2,
      "nts_short": "UG",
      "nts_long": "///E/17,///E/18"
    },
    {
      "index": 24,
      "num_nts": 3,
      "nts_short": "GUA",
      "nts_long": "///E/19,///E/20,///E/21"
    },
    {
      "index": 25,
      "num_nts": 2,
      "nts_short": "CG",
      "nts_long": "///E/48,///E/49"
    },
    {
      "index": 26,
      "num_nts": 2,
      "nts_short": "CA",
      "nts_long": "///E/75,///E/76"
    }
  ],
  "pseudoknot_order": 1,
  "pseudoknot_nts": [
    {
      "index": 1,
      "symbols": "[]",
      "num_nts": 8,
      "nts_short": "GCGCGCGC",
      "nts_long": "///F/19,///F/56,///G/19,///G/56,///H/19,///H/56,///E/19,///E/56"
    }
  ],
  "dbn": {
    "all_chains": {
      "num_nts": 297,
      "num_chars": 302,
      "bseq": "GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCA&GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCA&GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUU&AAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCC&GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUU&AAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCA",
      "sstr": "(((((((..((((.....[..)))).((((((.....)))))).....(((((..]....))))))))))))....&(((((((..((((.....[..)))).(((((.......))))).....(((((..]....))))))))))))....&(((((((..((((.....[..)))).(((((..&..))))).....(((((..]....))))))))))))...&(((((((..((((.....[..)))).(((((..&..))))).....(((((..]....))))))))))))....",
      "form": "AAAAAA...AA..........AAAAAAAAA.......AAAAAA.....AAA.A.......AAAAAAAAAAAA...-&AAAAAA...AA..........AAA.AAAAA...A..AAAAAAA.....AAAAA..A....AAAAAAAAAAAA...-&AAAAAA...AA..........AAA.AAAAAAA-&..AAAAA.....AAAAA..A....AAAA.AAAAAAAA.-&AAAAAA...AA...........AA.AAAAA..-&.AAAAAAA....AAAAA..A....AAAAAAAAAAAA...-"
    },
    "chain_F": {
      "num_nts": 76,
      "num_chars": 76,
      "bseq": "GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCA",
      "sstr": "(((((((..((((.....[..)))).((((((.....)))))).....(((((..]....))))))))))))....",
      "form": "AAAAAA...AA..........AAAAAAAAA.......AAAAAA.....AAA.A.......AAAAAAAAAAAA...-"
    },
    "chain_G": {
      "num_nts": 76,
      "num_chars": 76,
      "bseq": "GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCA",
      "sstr": "(((((((..((((.....[..)))).(((((.......))))).....(((((..]....))))))))))))....",
      "form": "AAAAAA...AA..........AAA.AAAAA...A..AAAAAAA.....AAAAA..A....AAAAAAAAAAAA...-"
    },
    "chain_H": {
      "num_nts": 72,
      "num_chars": 73,
      "bseq": "GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUU&AAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCC",
      "sstr": "(((((((..((((.....[..)))).(((((..&..))))).....(((((..]....))))))))))))...",
      "form": "AAAAAA...AA..........AAA.AAAAAAA-&..AAAAA.....AAAAA..A....AAAA.AAAAAAAA.-"
    },
    "chain_E": {
      "num_nts": 73,
      "num_chars": 74,
      "bseq": "GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUU&AAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCA",
      "sstr": "(((((((..((((.....[..)))).(((((..&..))))).....(((((..]....))))))))))))....",
      "form": "AAAAAA...AA...........AA.AAAAA..-&.AAAAAAA....AAAAA..A....AAAAAAAAAAAA...-"
    }
  },
  "chains": {
    "chain_F": {
      "num_nts": 76,
      "bseq": "GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCA",
      "sstr": "(((((((..((((.....[..)))).((((((.....)))))).....(((((..]....))))))))))))....",
      "form": "AAAAAA...AA..........AAAAAAAAA.......AAAAAA.....AAA.A.......AAAAAAAAAAAA...-",
      "helical_rise": 0.176,
      "helical_rise_std": 3.441,
      "helical_axis": [
        0.877,
        0.105,
        -0.469
      ],
      "point1": [
        -43.846,
        33.595,
        -28.640
      ],
      "point2": [
        -32.573,
        34.940,
        -34.671
      ],
      "num_chars": 226,
      "suite": "G1aC1aG1aG1aG1aA1bA2aU1[A2gG1aC1aU!!C1aA1aG!!U2aU!!G!!G!!U2uA!!G1aA1aG1aC1aA1aC1aG1aA1aC1aC!!U!!U!!G!!C!!C!!A1LA1aG1aG1aU1aC1aG1aG1aG1[G!!U!!C6dG1aC1aG1aA1aG1aU1aU1gC1aG1[A4dG1bU2aC1aU1aC1aG1aU1aU1aU1aC1aC1aC1aG1aC1aU1bC2oC!!A"
    },
    "chain_G": {
      "num_nts": 76,
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      "atom2_serNum": 10498,
      "donAcc_type": "standard",
      "distance": 2.911,
      "atom1_id": "///E/30/N3",
      "atom2_id": "///E/40/N1",
      "atom_pair": "N:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1097,
      "atom1_serNum": 10350,
      "atom2_serNum": 10497,
      "donAcc_type": "standard",
      "distance": 2.977,
      "atom1_id": "///E/30/N4",
      "atom2_id": "///E/40/O6",
      "atom_pair": "N:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1098,
      "atom1_serNum": 10367,
      "atom2_serNum": 10477,
      "donAcc_type": "standard",
      "distance": 2.897,
      "atom1_id": "///E/31/O2",
      "atom2_id": "///E/39/N2",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1099,
      "atom1_serNum": 10368,
      "atom2_serNum": 10475,
      "donAcc_type": "standard",
      "distance": 2.913,
      "atom1_id": "///E/31/N3",
      "atom2_id": "///E/39/N1",
      "atom_pair": "N:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1100,
      "atom1_serNum": 10370,
      "atom2_serNum": 10474,
      "donAcc_type": "standard",
      "distance": 2.829,
      "atom1_id": "///E/31/N4",
      "atom2_id": "///E/39/O6",
      "atom_pair": "N:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1101,
      "atom1_serNum": 10387,
      "atom2_serNum": 10452,
      "donAcc_type": "standard",
      "distance": 3.374,
      "atom1_id": "///E/32/O2",
      "atom2_id": "///E/38/N6",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1102,
      "atom1_serNum": 10390,
      "atom2_serNum": 10430,
      "donAcc_type": "standard",
      "distance": 3.318,
      "atom1_id": "///E/32/O4",
      "atom2_id": "///E/37/N6",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1103,
      "atom1_serNum": 10390,
      "atom2_serNum": 10431,
      "donAcc_type": "questionable",
      "distance": 3.010,
      "atom1_id": "///E/32/O4",
      "atom2_id": "///E/37/N1",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1104,
      "atom1_serNum": 10423,
      "atom2_serNum": 10441,
      "donAcc_type": "acceptable",
      "distance": 3.400,
      "atom1_id": "///E/37/O2'",
      "atom2_id": "///E/38/O4'",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1105,
      "atom1_serNum": 10433,
      "atom2_serNum": 10449,
      "donAcc_type": "questionable",
      "distance": 2.708,
      "atom1_id": "///E/37/N3",
      "atom2_id": "///E/38/N7",
      "atom_pair": "N:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1106,
      "atom1_serNum": 10553,
      "atom2_serNum": 10572,
      "donAcc_type": "acceptable",
      "distance": 3.088,
      "atom1_id": "///E/43/O2'",
      "atom2_id": "///E/44/O4'",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1107,
      "atom1_serNum": 10622,
      "atom2_serNum": 10641,
      "donAcc_type": "acceptable",
      "distance": 2.196,
      "atom1_id": "///E/46/O2'",
      "atom2_id": "///E/47/O4'",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1108,
      "atom1_serNum": 10645,
      "atom2_serNum": 10657,
      "donAcc_type": "acceptable",
      "distance": 2.192,
      "atom1_id": "///E/47/O2'",
      "atom2_id": "///E/48/OP2",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1109,
      "atom1_serNum": 10656,
      "atom2_serNum": 10700,
      "donAcc_type": "questionable",
      "distance": 3.158,
      "atom1_id": "///E/48/OP1",
      "atom2_id": "///E/50/OP2",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1110,
      "atom1_serNum": 10665,
      "atom2_serNum": 10676,
      "donAcc_type": "acceptable",
      "distance": 2.983,
      "atom1_id": "///E/48/O2'",
      "atom2_id": "///E/49/OP1",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1111,
      "atom1_serNum": 10665,
      "atom2_serNum": 10901,
      "donAcc_type": "acceptable",
      "distance": 3.163,
      "atom1_id": "///E/48/O2'",
      "atom2_id": "///E/59/O2'",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1112,
      "atom1_serNum": 10692,
      "atom2_serNum": 11032,
      "donAcc_type": "standard",
      "distance": 3.044,
      "atom1_id": "///E/49/O6",
      "atom2_id": "///E/65/N3",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1113,
      "atom1_serNum": 10693,
      "atom2_serNum": 11031,
      "donAcc_type": "standard",
      "distance": 2.765,
      "atom1_id": "///E/49/N1",
      "atom2_id": "///E/65/O2",
      "atom_pair": "N:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1114,
      "atom1_serNum": 10695,
      "atom2_serNum": 11031,
      "donAcc_type": "standard",
      "distance": 3.254,
      "atom1_id": "///E/49/N2",
      "atom2_id": "///E/65/O2",
      "atom_pair": "N:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1115,
      "atom1_serNum": 10712,
      "atom2_serNum": 11014,
      "donAcc_type": "standard",
      "distance": 2.726,
      "atom1_id": "///E/50/O2",
      "atom2_id": "///E/64/N2",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1116,
      "atom1_serNum": 10713,
      "atom2_serNum": 11012,
      "donAcc_type": "standard",
      "distance": 2.846,
      "atom1_id": "///E/50/N3",
      "atom2_id": "///E/64/N1",
      "atom_pair": "N:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1117,
      "atom1_serNum": 10715,
      "atom2_serNum": 11011,
      "donAcc_type": "standard",
      "distance": 2.908,
      "atom1_id": "///E/50/N4",
      "atom2_id": "///E/64/O6",
      "atom_pair": "N:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1118,
      "atom1_serNum": 10735,
      "atom2_serNum": 10991,
      "donAcc_type": "standard",
      "distance": 2.956,
      "atom1_id": "///E/51/O6",
      "atom2_id": "///E/63/N4",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1119,
      "atom1_serNum": 10736,
      "atom2_serNum": 10989,
      "donAcc_type": "standard",
      "distance": 2.924,
      "atom1_id": "///E/51/N1",
      "atom2_id": "///E/63/N3",
      "atom_pair": "N:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1120,
      "atom1_serNum": 10738,
      "atom2_serNum": 10988,
      "donAcc_type": "standard",
      "distance": 2.807,
      "atom1_id": "///E/51/N2",
      "atom2_id": "///E/63/O2",
      "atom_pair": "N:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1121,
      "atom1_serNum": 10758,
      "atom2_serNum": 10971,
      "donAcc_type": "standard",
      "distance": 3.083,
      "atom1_id": "///E/52/N6",
      "atom2_id": "///E/62/O4",
      "atom_pair": "N:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1122,
      "atom1_serNum": 10759,
      "atom2_serNum": 10969,
      "donAcc_type": "standard",
      "distance": 2.900,
      "atom1_id": "///E/52/N1",
      "atom2_id": "///E/62/N3",
      "atom_pair": "N:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1123,
      "atom1_serNum": 10773,
      "atom2_serNum": 10792,
      "donAcc_type": "acceptable",
      "distance": 3.299,
      "atom1_id": "///E/53/O2'",
      "atom2_id": "///E/54/O4'",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1124,
      "atom1_serNum": 10780,
      "atom2_serNum": 10951,
      "donAcc_type": "standard",
      "distance": 2.917,
      "atom1_id": "///E/53/O6",
      "atom2_id": "///E/61/N4",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1125,
      "atom1_serNum": 10781,
      "atom2_serNum": 10949,
      "donAcc_type": "standard",
      "distance": 2.863,
      "atom1_id": "///E/53/N1",
      "atom2_id": "///E/61/N3",
      "atom_pair": "N:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1126,
      "atom1_serNum": 10783,
      "atom2_serNum": 10948,
      "donAcc_type": "standard",
      "distance": 2.708,
      "atom1_id": "///E/53/N2",
      "atom2_id": "///E/61/O2",
      "atom_pair": "N:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1127,
      "atom1_serNum": 10800,
      "atom2_serNum": 10886,
      "donAcc_type": "standard",
      "distance": 2.935,
      "atom1_id": "///E/54/O2",
      "atom2_id": "///E/58/N6",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1128,
      "atom1_serNum": 10801,
      "atom2_serNum": 10883,
      "donAcc_type": "standard",
      "distance": 3.008,
      "atom1_id": "///E/54/N3",
      "atom2_id": "///E/58/N7",
      "atom_pair": "N:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1129,
      "atom1_serNum": 10816,
      "atom2_serNum": 10860,
      "donAcc_type": "acceptable",
      "distance": 2.994,
      "atom1_id": "///E/55/O2'",
      "atom2_id": "///E/57/N7",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1130,
      "atom1_serNum": 10821,
      "atom2_serNum": 10871,
      "donAcc_type": "standard",
      "distance": 2.677,
      "atom1_id": "///E/55/N3",
      "atom2_id": "///E/58/OP2",
      "atom_pair": "N:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1131,
      "atom1_serNum": 10879,
      "atom2_serNum": 10916,
      "donAcc_type": "acceptable",
      "distance": 2.667,
      "atom1_id": "///E/58/O2'",
      "atom2_id": "///E/60/OP2",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1132,
      "atom1_serNum": 10916,
      "atom2_serNum": 10951,
      "donAcc_type": "standard",
      "distance": 3.126,
      "atom1_id": "///E/60/OP2",
      "atom2_id": "///E/61/N4",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1133,
      "atom1_serNum": 11027,
      "atom2_serNum": 11043,
      "donAcc_type": "acceptable",
      "distance": 3.451,
      "atom1_id": "///E/65/O2'",
      "atom2_id": "///E/66/O4'",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 1134,
      "atom1_serNum": 11241,
      "atom2_serNum": 11298,
      "donAcc_type": "unknown",
      "distance": 2.608,
      "atom1_id": "///E/76/OP1",
      "atom2_id": "///E/101/N1",
      "atom_pair": "O:N",
      "residue_pair": "nt:ligand"
    }
  ],
  "refCoords": {
    "purine": [
      "   12 ATOMS,    12 BONDS",
      "    1 N      -2.2500   5.0000   0.4000",
      "    2 N      -2.2500  -0.5000   0.4000",
      "    3 N      -2.2500  -0.5000  -0.4000",
      "    4 N      -2.2500   5.0000  -0.4000",
      "    5 C       1.2500   5.0000   0.4000",
      "    6 C       1.2500  -0.5000   0.4000",
      "    7 C       1.2500  -0.5000  -0.4000",
      "    8 C       1.2500   5.0000  -0.4000",
      "    9 C      -2.2500   5.0000   0.4000",
      "   10 C      -2.2500  -0.5000   0.4000",
      "   11 C      -2.2500  -0.5000  -0.4000",
      "   12 C      -2.2500   5.0000  -0.4000",
      "    1     1     2",
      "    2     2     3",
      "    3     3     4",
      "    4     4     1",
      "    5     5     6",
      "    6     6     7",
      "    7     7     8",
      "    8     5     8",
      "    9     9     5",
      "   10    10     6",
      "   11    11     7",
      "   12    12     8"
    ],
    "pyrimidine": [
      "   12 ATOMS,    12 BONDS",
      "    1 N      -2.2500   5.0000   0.4000",
      "    2 N      -2.2500   1.0000   0.4000",
      "    3 N      -2.2500   1.0000  -0.4000",
      "    4 N      -2.2500   5.0000  -0.4000",
      "    5 C       1.2500   5.0000   0.4000",
      "    6 C       1.2500   1.0000   0.4000",
      "    7 C       1.2500   1.0000  -0.4000",
      "    8 C       1.2500   5.0000  -0.4000",
      "    9 C      -2.2500   5.0000   0.4000",
      "   10 C      -2.2500   1.0000   0.4000",
      "   11 C      -2.2500   1.0000  -0.4000",
      "   12 C      -2.2500   5.0000  -0.4000",
      "    1     1     2",
      "    2     2     3",
      "    3     3     4",
      "    4     4     1",
      "    5     5     6",
      "    6     6     7",
      "    7     7     8",
      "    8     5     8",
      "    9     9     5",
      "   10    10     6",
      "   11    11     7",
      "   12    12     8"
    ],
    "wc_pair": [
      "   12 ATOMS,    12 BONDS",
      "    1 N      -2.2500   5.0000   0.4000",
      "    2 N      -2.2500  -5.0000   0.4000",
      "    3 N      -2.2500  -5.0000  -0.4000",
      "    4 N      -2.2500   5.0000  -0.4000",
      "    5 C       2.2500   5.0000   0.4000",
      "    6 C       2.2500  -5.0000   0.4000",
      "    7 C       2.2500  -5.0000  -0.4000",
      "    8 C       2.2500   5.0000  -0.4000",
      "    9 C      -2.2500   5.0000   0.4000",
      "   10 C      -2.2500  -5.0000   0.4000",
      "   11 C      -2.2500  -5.0000  -0.4000",
      "   12 C      -2.2500   5.0000  -0.4000",
      "    1     1     2",
      "    2     2     3",
      "    3     3     4",
      "    4     4     1",
      "    5     5     6",
      "    6     6     7",
      "    7     7     8",
      "    8     5     8",
      "    9     9     5",
      "   10    10     6",
      "   11    11     7",
      "   12    12     8"
    ]
  },
  "metadata": {
    "license": "http://innovation.columbia.edu/technologies/CU20391",
    "url": "http://x3dna.org/",
    "url_alt": "http://home.x3dna.org/",
    "forum": "http://forum.x3dna.org/",
    "citation": "Lu et al. (2015). 'DSSR: an integrated software tool for dissecting the spatial structure of RNA.' Nucleic Acids Res., 43(21):e142 [doi:10.1093/nar/gkv716].",
    "str_id": "7f36",
    "num_aaChains": 4,
    "aaChains": "A=159,B=158,C=158,D=159",
    "num_naChains": 4,
    "naChains": "E=73,F=76,G=76,H=72",
    "num_atoms": 11302,
    "num_waters": 0,
    "num_metals": 41,
    "metals_desc": "Ca=41",
    "num_notes": 52,
    "notes": [
      {
        "Aminors": "A-minor interactions (including types I and II)"
      },
      {
        "Cstem_index": "stem index of the 'Canonical' helix in k-turn"
      },
      {
        "Cstem_pair": "Cstem bp delineating the k-turn internal loop"
      },
      {
        "Dp": "perpendicular distance of the 3' P atom to the glycosidic bond"
      },
      {
        "GA_pair": "sheared G-A pair in k-turn"
      },
      {
        "HtypePknot": "H-type pseudoknot"
      },
      {
        "Kturn": "kink-turn (k-turn)"
      },
      {
        "LW": "Leontis-Westhof"
      },
      {
        "NCstem_index": "stem index of the 'Non-Canonical' helix in k-turn"
      },
      {
        "NCstem_pair": "NCstem bp delineating the k-turn internal loop"
      },
      {
        "Uturn": "U-turn of the UNR- or GNRA-type"
      },
      {
        "aa": "amino acid"
      },
      {
        "atom_pair": "symbols of the two atoms involved in an H-bond"
      },
      {
        "auxfiles": "auxiliary files"
      },
      {
        "glyco_bond": "conformation of base related to sugar (syn or anti)"
      },
      {
        "bb_type": "backbone conformation, BI or BII"
      },
      {
        "bending_angle": "angle between two helical axes"
      },
      {
        "bp": "base pair"
      },
      {
        "bseq": "base sequence in one-letter code"
      },
      {
        "bulge": "bulge loop"
      },
      {
        "coaxStacks": "coaxial stacking of stems within a helix"
      },
      {
        "dbn": "dot bracket notation"
      },
      {
        "desc": "description"
      },
      {
        "donAcc_type": "donor/acceptor type of the atom pair in an H-bond"
      },
      {
        "epsilon_zeta": "difference between epsilon and zeta torsion angles"
      },
      {
        "hairpin": "hairpin loop"
      },
      {
        "hbond": "hydrogen bond (H-bond)"
      },
      {
        "helix": "defined by base-stacking interactions, regardless of bp type and backbone connectivity"
      },
      {
        "id": "identifier"
      },
      {
        "iloop": "internal loop"
      },
      {
        "index": "serial number"
      },
      {
        "isoCanonPairs": "isolated canonical pairs"
      },
      {
        "junction": "(multi-branched) junction loop"
      },
      {
        "kissingLoop": "kissing loop"
      },
      {
        "multiplet": "3+ bases in a coplanar geometry"
      },
      {
        "na": "nucleic acid"
      },
      {
        "nonPair": "two nts not forming a pair, but with H-bonding/stacking interactions"
      },
      {
        "nonStack": "nucleotide not involved in stacking interactions"
      },
      {
        "nt": "nucleotide"
      },
      {
        "num": "number"
      },
      {
        "oArea": "overlap areas between two bases, including exocyclic atoms"
      },
      {
        "oArea_ring": "overlap areas between two bases, including only ring atoms"
      },
      {
        "phosContacts": "H-bonding and atom-capping interactions involving a phosphate"
      },
      {
        "residue_pair": "types of the two residues involved in an H-bond"
      },
      {
        "rmsd": "root-mean-squares deviation"
      },
      {
        "serNum": "serial number"
      },
      {
        "ssSegments": "single-stranded segments not involved in loops"
      },
      {
        "ssZp": "Z-coordinate of the 3' phosphorus atom with reference to the 5' base plane"
      },
      {
        "sstr": "secondary structure in dbn"
      },
      {
        "stem": "helix consisting of only canonical pairs, with a continuous backbone"
      },
      {
        "str_id": "structure identifier, derived from inpfile with extension removed"
      },
      {
        "vert_dist": "vertical distance from an atom to a base plane"
      }
    ],
    "num_auxfiles": 18,
    "auxfiles": [
      {
        "index": 1,
        "name": "dssr-pairs.pdb",
        "desc": "an ensemble of base pairs"
      },
      {
        "index": 2,
        "name": "dssr-multiplets.pdb",
        "desc": "an ensemble of multiplets"
      },
      {
        "index": 3,
        "name": "dssr-stems.pdb",
        "desc": "an ensemble of stems"
      },
      {
        "index": 4,
        "name": "dssr-helices.pdb",
        "desc": "an ensemble of helices (coaxial stacking)"
      },
      {
        "index": 5,
        "name": "dssr-hairpins.pdb",
        "desc": "an ensemble of hairpin loops"
      },
      {
        "index": 6,
        "name": "dssr-junctions.pdb",
        "desc": "an ensemble of junctions (multi-branch)"
      },
      {
        "index": 7,
        "name": "dssr-2ndstrs.bpseq",
        "desc": "secondary structure in bpseq format"
      },
      {
        "index": 8,
        "name": "dssr-2ndstrs.ct",
        "desc": "secondary structure in connectivity table format"
      },
      {
        "index": 9,
        "name": "dssr-2ndstrs.dbn",
        "desc": "secondary structure in dot-bracket notation"
      },
      {
        "index": 10,
        "name": "dssr-torsions.txt",
        "desc": "backbone torsion angles and suite names"
      },
      {
        "index": 11,
        "name": "dssr-splays.pdb",
        "desc": "an ensemble of splayed-apart units"
      },
      {
        "index": 12,
        "name": "dssr-Aminors.pdb",
        "desc": "an ensemble of A minor motifs (types I and II)"
      },
      {
        "index": 13,
        "name": "dssr-stacks.pdb",
        "desc": "an ensemble of base stacks"
      },
      {
        "index": 14,
        "name": "dssr-atom2bases.pdb",
        "desc": "an ensemble of atom-base stacking interactions"
      },
      {
        "index": 15,
        "name": "dssr-rotmat.txt",
        "desc": "position vector and rotation matrix"
      },
      {
        "index": 16,
        "name": "dssr-viewV.pdb",
        "desc": "vertical view of the principal moment of inertia"
      },
      {
        "index": 17,
        "name": "dssr-viewH.pdb",
        "desc": "horizontal view of the principal moment of inertia"
      },
      {
        "index": 18,
        "name": "dssr-viewT.pdb",
        "desc": "top view of the principal moment of inertia"
      }
    ],
    "time_used": "999"
  }
}