**************************************************************************** File name: 7pey.pdb no. of DNA/RNA chains: 2 [I=171,J=171] no. of nucleotides: 342 no. of atoms: 13099 no. of waters: 0 no. of metals: 0 **************************************************************************** List of 178 base pairs nt1 nt2 bp name Saenger LW DSSR 1 J.DG181 I.DC522 G-C WC 19-XIX cWW cW-W 2 J.DG182 I.DC521 G-C WC 19-XIX cWW cW-W 3 J.DC183 I.DG520 C-G WC 19-XIX cWW cW-W 4 J.DA184 I.DT519 A-T WC 20-XX cWW cW-W 5 J.DC185 I.DG518 C-G WC 19-XIX cWW cW-W 6 J.DT186 I.DA517 T-A WC 20-XX cWW cW-W 7 J.DG187 I.DC516 G-C WC 19-XIX cWW cW-W 8 J.DG188 I.DC515 G-C WC 19-XIX cWW cW-W 9 J.DA189 I.DT514 A-T WC 20-XX cWW cW-W 10 J.DA190 I.DT513 A-T WC 20-XX cWW cW-W 11 J.DC191 I.DG512 C-G WC 19-XIX cWW cW-W 12 J.DA192 I.DT511 A-T WC 20-XX cWW cW-W 13 J.DG193 I.DC510 G-C WC 19-XIX cWW cW-W 14 J.DG194 I.DC509 G-C WC 19-XIX cWW cW-W 15 J.DA195 I.DT508 A-T WC 20-XX cWW cW-W 16 J.DT196 I.DA507 T-A WC 20-XX cWW cW-W 17 J.DG197 I.DC506 G-C WC 19-XIX cWW cW-W 18 J.DT198 I.DA505 T-A WC 20-XX cWW cW-W 19 J.DA199 I.DT504 A-T WC 20-XX cWW cW-W 20 J.DT200 I.DA503 T-A WC 20-XX cWW cW-W 21 J.DA201 I.DT502 A-T WC 20-XX cWW cW-W 22 J.DT202 I.DA501 T-A WC 20-XX cWW cW-W 23 J.DA203 I.DT500 A-T WC 20-XX cWW cW-W 24 J.DT204 I.DA499 T-A WC 20-XX cWW cW-W 25 J.DG205 I.DC498 G-C WC 19-XIX cWW cW-W 26 J.DT206 I.DA497 T-A WC 20-XX cWW cW-W 27 J.DG207 I.DC496 G-C WC 19-XIX cWW cW-W 28 J.DA208 I.DT495 A-T WC 20-XX cWW cW-W 29 J.DC209 I.DG494 C-G WC 19-XIX cWW cW-W 30 J.DA210 I.DT493 A-T WC 20-XX cWW cW-W 31 J.DC211 I.DG492 C-G WC 19-XIX cWW cW-W 32 J.DG212 I.DC491 G-C WC 19-XIX cWW cW-W 33 J.DT213 I.DA490 T-A WC 20-XX cWW cW-W 34 J.DG214 I.DC489 G-C WC 19-XIX cWW cW-W 35 J.DC215 I.DG488 C-G WC 19-XIX cWW cW-W 36 J.DC216 I.DG487 C-G WC 19-XIX cWW cW-W 37 J.DT217 I.DA486 T-A WC 20-XX cWW cW-W 38 J.DG218 I.DC485 G-C WC 19-XIX cWW cW-W 39 J.DG219 I.DC484 G-C WC 19-XIX cWW cW-W 40 J.DA220 I.DT483 A-T WC 20-XX cWW cW-W 41 J.DG221 I.DC482 G-C WC 19-XIX cWW cW-W 42 J.DA222 I.DG480 A-G -- -- cWW cW-W 43 J.DA222 I.DT481 A-T WC 20-XX cWW cW-W 44 J.DC223 I.DG480 C-G WC 19-XIX cWW cW-W 45 J.DT224 I.DA479 T-A WC 20-XX cWW cW-W 46 J.DA225 I.DT478 A-T WC 20-XX cWW cW-W 47 J.DG226 I.DC477 G-C WC 19-XIX cWW cW-W 48 J.DG227 I.DC476 G-C WC 19-XIX cWW cW-W 49 J.DG228 I.DC475 G-C WC 19-XIX cWW cW-W 50 J.DA229 I.DT474 A-T WC 20-XX cWW cW-W 51 J.DG230 I.DC473 G-C WC 19-XIX cWW cW-W 52 J.DT231 I.DA472 T-A WC 20-XX cWW cW-W 53 J.DA232 I.DT471 A-T WC 20-XX cWW cW-W 54 J.DA233 I.DT470 A-T WC 20-XX cWW cW-W 55 J.DT234 I.DA469 T-A WC 20-XX cWW cW-W 56 J.DC235 I.DG468 C-G WC 19-XIX cWW cW-W 57 J.DC236 I.DG467 C-G WC 19-XIX cWW cW-W 58 J.DC237 I.DG466 C-G WC 19-XIX cWW cW-W 59 J.DC238 I.DG465 C-G WC 19-XIX cWW cW-W 60 J.DT239 I.DA464 T-A WC 20-XX cWW cW-W 61 J.DT240 I.DA463 T-A WC 20-XX cWW cW-W 62 J.DG241 I.DC462 G-C WC 19-XIX cWW cW-W 63 J.DG242 I.DC461 G-C WC 19-XIX cWW cW-W 64 J.DC243 I.DG460 C-G WC 19-XIX cWW cW-W 65 J.DG244 I.DC459 G-C WC 19-XIX cWW cW-W 66 J.DG245 I.DC458 G-C WC 19-XIX cWW cW-W 67 J.DT246 I.DA457 T-A WC 20-XX cWW cW-W 68 J.DT247 I.DA456 T-A WC 20-XX cWW cW-W 69 J.DA248 I.DT455 A-T WC 20-XX cWW cW-W 70 J.DA249 I.DT454 A-T WC 20-XX cWW cW-W 71 J.DA250 I.DT453 A-T WC 20-XX cWW cW-W 72 J.DA251 I.DT452 A-T WC 20-XX cWW cW-W 73 J.DC252 I.DG451 C-G WC 19-XIX cWW cW-W 74 J.DG253 I.DC450 G-C WC 19-XIX cWW cW-W 75 J.DC254 I.DG449 C-G WC 19-XIX cWW cW-W 76 J.DG255 I.DC448 G-C WC 19-XIX cWW cW-W 77 J.DG256 I.DC447 G-C WC 19-XIX cWW cW-W 78 J.DG257 I.DC446 G-C WC 19-XIX cWW cW-W 79 J.DG258 I.DC445 G-C WC 19-XIX cWW cW-W 80 J.DG259 I.DC444 G-C WC 19-XIX cWW cW-W 81 J.DA260 I.DG442 A-G -- -- cWW cW-W 82 J.DA260 I.DT443 A-T WC 20-XX cWW cW-W 83 J.DC261 I.DG442 C-G WC 19-XIX cWW cW-W 84 J.DA262 I.DT441 A-T WC 20-XX cWW cW-W 85 J.DG263 I.DC440 G-C WC 19-XIX cWW cW-W 86 J.DC264 I.DG439 C-G WC 19-XIX cWW cW-W 87 J.DG265 I.DC438 G-C WC 19-XIX cWW cW-W 88 J.DC266 I.DG437 C-G WC 19-XIX cWW cW-W 89 J.DG267 I.DC436 G-C WC 19-XIX cWW cW-W 90 J.DT268 I.DA435 T-A WC 20-XX cWW cW-W 91 J.DA269 I.DT434 A-T WC 20-XX cWW cW-W 92 J.DC270 I.DG433 C-G WC 19-XIX cWW cW-W 93 J.DG271 I.DC432 G-C WC 19-XIX cWW cW-W 94 J.DT272 I.DA431 T-A WC 20-XX cWW cW-W 95 J.DG273 I.DC430 G-C WC 19-XIX cWW cW-W 96 J.DC274 I.DG429 C-G WC 19-XIX cWW cW-W 97 J.DG275 I.DC428 G-C WC 19-XIX cWW cW-W 98 J.DT276 I.DA427 T-A WC 20-XX cWW cW-W 99 J.DT276 I.DC428 T-C -- -- cWW cW-W 100 J.DT277 I.DA426 T-A WC 20-XX cWW cW-W 101 J.DT278 I.DA425 T-A WC 20-XX cWW cW-W 102 J.DA279 I.DT424 A-T WC 20-XX cWW cW-W 103 J.DA280 I.DT423 A-T WC 20-XX cWW cW-W 104 J.DG281 I.DC422 G-C WC 19-XIX cWW cW-W 105 J.DC282 I.DG421 C-G WC 19-XIX cWW cW-W 106 J.DG283 I.DC420 G-C WC 19-XIX cWW cW-W 107 J.DG284 I.DC419 G-C WC 19-XIX cWW cW-W 108 J.DT285 I.DA418 T-A WC 20-XX cWW cW-W 109 J.DG286 I.DC417 G-C WC 19-XIX cWW cW-W 110 J.DC287 I.DG416 C-G WC 19-XIX cWW cW-W 111 J.DT288 I.DA415 T-A WC 20-XX cWW cW-W 112 J.DT288 I.DG416 T-G -- -- cWW cW-W 113 J.DA289 I.DT414 A-T WC 20-XX cWW cW-W 114 J.DG290 I.DC413 G-C WC 19-XIX cWW cW-W 115 J.DA291 I.DT412 A-T WC 20-XX cWW cW-W 116 J.DG292 I.DC411 G-C WC 19-XIX cWW cW-W 117 J.DC293 I.DG410 C-G WC 19-XIX cWW cW-W 118 J.DT294 I.DA409 T-A WC 20-XX cWW cW-W 119 J.DG295 I.DC408 G-C WC 19-XIX cWW cW-W 120 J.DT296 I.DA407 T-A WC 20-XX cWW cW-W 121 J.DC297 I.DG406 C-G WC 19-XIX cWW cW-W 122 J.DT298 I.DA405 T-A WC 20-XX cWW cW-W 123 J.DA299 I.DT404 A-T WC 20-XX cWW cW-W 124 J.DC300 I.DG403 C-G WC 19-XIX cWW cW-W 125 J.DG301 I.DC402 G-C WC 19-XIX cWW cW-W 126 J.DA302 I.DG400 A-G -- -- cWW cW-W 127 J.DA302 I.DT401 A-T WC 20-XX cWW cW-W 128 J.DC303 I.DG400 C-G WC 19-XIX cWW cW-W 129 J.DC304 I.DG399 C-G WC 19-XIX cWW cW-W 130 J.DA305 I.DT398 A-T WC 20-XX cWW cW-W 131 J.DA306 I.DT397 A-T WC 20-XX cWW cW-W 132 J.DT307 I.DA396 T-A WC 20-XX cWW cW-W 133 J.DT308 I.DA395 T-A WC 20-XX cWW cW-W 134 J.DG309 I.DC394 G-C WC 19-XIX cWW cW-W 135 J.DA310 I.DT393 A-T WC 20-XX cWW cW-W 136 J.DG311 I.DC392 G-C WC 19-XIX cWW cW-W 137 J.DC312 I.DG391 C-G WC 19-XIX cWW cW-W 138 J.DG313 I.DC390 G-C WC 19-XIX cWW cW-W 139 J.DG314 I.DC389 G-C WC 19-XIX cWW cW-W 140 J.DC315 I.DG388 C-G WC 19-XIX cWW cW-W 141 J.DC316 I.DG387 C-G WC 19-XIX cWW cW-W 142 J.DT317 I.DA386 T-A WC 20-XX cWW cW-W 143 J.DT317 I.DG387 T-G -- -- cWW cW-W 144 J.DC318 I.DG385 C-G WC 19-XIX cWW cW-W 145 J.DG319 I.DC384 G-C WC 19-XIX cWW cW-W 146 J.DG320 I.DC383 G-C WC 19-XIX cWW cW-W 147 J.DC321 I.DG382 C-G WC 19-XIX cWW cW-W 148 J.DA322 I.DT381 A-T WC 20-XX cWW cW-W 149 J.DC323 I.DG380 C-G WC 19-XIX cWW cW-W 150 J.DC324 I.DG379 C-G WC 19-XIX cWW cW-W 151 J.DG325 I.DC378 G-C WC 19-XIX cWW cW-W 152 J.DG326 I.DC377 G-C WC 19-XIX cWW cW-W 153 J.DG327 I.DC376 G-C WC 19-XIX cWW cW-W 154 J.DA328 I.DT375 A-T WC 20-XX cWW cW-W 155 J.DT329 I.DA374 T-A WC 20-XX cWW cW-W 156 J.DT330 I.DA373 T-A WC 20-XX cWW cW-W 157 J.DC331 I.DG372 C-G WC 19-XIX cWW cW-W 158 J.DT332 I.DA371 T-A WC 20-XX cWW cW-W 159 J.DC333 I.DG370 C-G WC 19-XIX cWW cW-W 160 J.DC334 I.DG369 C-G WC 19-XIX cWW cW-W 161 J.DC334 I.DG370 C-G -- -- cWW cW-W 162 J.DA335 I.DT368 A-T WC 20-XX cWW cW-W 163 J.DG336 I.DC367 G-C WC 19-XIX cWW cW-W 164 J.DG337 I.DC366 G-C WC 19-XIX cWW cW-W 165 J.DG338 I.DC365 G-C WC 19-XIX cWW cW-W 166 J.DG339 I.DC364 G-C WC 19-XIX cWW cW-W 167 J.DA340 I.DT363 A-T WC 20-XX cWW cW-W 168 J.DT341 I.DA362 T-A WC 20-XX cWW cW-W 169 J.DC342 I.DG361 C-G WC 19-XIX cWW cW-W 170 J.DC343 I.DG360 C-G WC 19-XIX cWW cW-W 171 J.DG344 I.DC359 G-C WC 19-XIX cWW cW-W 172 J.DG345 I.DC358 G-C WC 19-XIX cWW cW-W 173 J.DA346 I.DT357 A-T WC 20-XX cWW cW-W 174 J.DT347 I.DA356 T-A WC 20-XX cWW cW-W 175 J.DG348 I.DC355 G-C WC 19-XIX cWW cW-W 176 J.DC349 I.DG354 C-G WC 19-XIX cWW cW-W 177 J.DT350 I.DA353 T-A WC 20-XX cWW cW-W 178 J.DC351 I.DG352 C-G WC 19-XIX cWW cW-W **************************************************************************** List of 1 helix Note: A helix is defined by base-stacking interactions, regardless of pair type and backbone connectivity, and may contain more than one stem. helix#number[stems-contained] bps=number-of-base-pairs in the helix bp-type: '|' for a canonical WC/wobble pair, '.' otherwise helix-form: classification of a dinucleotide step comprising the bp above the given designation and the bp that follows it. Types include 'A', 'B' or 'Z' for the common A-, B- and Z-form helices, '.' for an unclassified step, and 'x' for a step without a continuous backbone. -------------------------------------------------------------------- helix#1[1] bps=171 strand-1 5'-GGCACTGGAACAGGATGTATATATGTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAGGGGATCCGGATGCTC-3' bp-type ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| strand-2 3'-CCGTGACCTTGTCCTACATATATACACTGTGCACGGACCTCTGATCCCTCATTAGGGGAACCGCCAATTTTGCGCCCCCTGTCGCGCATGCACGCAAATTCGCCACGATCTCGACAGATGCTGGTTAACTCGCCGGAGCCGTGGCCCTAAGAGGTCCCCTAGGCCTACGAG-5' helix-form BBBBBB....BBB..BBB.BBBBBB..BBBBB.....BBBBBB.BB.BBBBBB..B.B...B.....BBBBBBBB.BBBBBBBBBBBBBBBBBB..B.BBBB.BB...BBBBBB....BBBBB.B....BBBBBB....BBBB.BBBBBB....BBB....BBBBBBBBB 1 J.DG181 I.DC522 G-C WC 19-XIX cWW cW-W 2 J.DG182 I.DC521 G-C WC 19-XIX cWW cW-W 3 J.DC183 I.DG520 C-G WC 19-XIX cWW cW-W 4 J.DA184 I.DT519 A-T WC 20-XX cWW cW-W 5 J.DC185 I.DG518 C-G WC 19-XIX cWW cW-W 6 J.DT186 I.DA517 T-A WC 20-XX cWW cW-W 7 J.DG187 I.DC516 G-C WC 19-XIX cWW cW-W 8 J.DG188 I.DC515 G-C WC 19-XIX cWW cW-W 9 J.DA189 I.DT514 A-T WC 20-XX cWW cW-W 10 J.DA190 I.DT513 A-T WC 20-XX cWW cW-W 11 J.DC191 I.DG512 C-G WC 19-XIX cWW cW-W 12 J.DA192 I.DT511 A-T WC 20-XX cWW cW-W 13 J.DG193 I.DC510 G-C WC 19-XIX cWW cW-W 14 J.DG194 I.DC509 G-C WC 19-XIX cWW cW-W 15 J.DA195 I.DT508 A-T WC 20-XX cWW cW-W 16 J.DT196 I.DA507 T-A WC 20-XX cWW cW-W 17 J.DG197 I.DC506 G-C WC 19-XIX cWW cW-W 18 J.DT198 I.DA505 T-A WC 20-XX cWW cW-W 19 J.DA199 I.DT504 A-T WC 20-XX cWW cW-W 20 J.DT200 I.DA503 T-A WC 20-XX cWW cW-W 21 J.DA201 I.DT502 A-T WC 20-XX cWW cW-W 22 J.DT202 I.DA501 T-A WC 20-XX cWW cW-W 23 J.DA203 I.DT500 A-T WC 20-XX cWW cW-W 24 J.DT204 I.DA499 T-A WC 20-XX cWW cW-W 25 J.DG205 I.DC498 G-C WC 19-XIX cWW cW-W 26 J.DT206 I.DA497 T-A WC 20-XX cWW cW-W 27 J.DG207 I.DC496 G-C WC 19-XIX cWW cW-W 28 J.DA208 I.DT495 A-T WC 20-XX cWW cW-W 29 J.DC209 I.DG494 C-G WC 19-XIX cWW cW-W 30 J.DA210 I.DT493 A-T WC 20-XX cWW cW-W 31 J.DC211 I.DG492 C-G WC 19-XIX cWW cW-W 32 J.DG212 I.DC491 G-C WC 19-XIX cWW cW-W 33 J.DT213 I.DA490 T-A WC 20-XX cWW cW-W 34 J.DG214 I.DC489 G-C WC 19-XIX cWW cW-W 35 J.DC215 I.DG488 C-G WC 19-XIX cWW cW-W 36 J.DC216 I.DG487 C-G WC 19-XIX cWW cW-W 37 J.DT217 I.DA486 T-A WC 20-XX cWW cW-W 38 J.DG218 I.DC485 G-C WC 19-XIX cWW cW-W 39 J.DG219 I.DC484 G-C WC 19-XIX cWW cW-W 40 J.DA220 I.DT483 A-T WC 20-XX cWW cW-W 41 J.DG221 I.DC482 G-C WC 19-XIX cWW cW-W 42 J.DA222 I.DT481 A-T WC 20-XX cWW cW-W 43 J.DC223 I.DG480 C-G WC 19-XIX cWW cW-W 44 J.DT224 I.DA479 T-A WC 20-XX cWW cW-W 45 J.DA225 I.DT478 A-T WC 20-XX cWW cW-W 46 J.DG226 I.DC477 G-C WC 19-XIX cWW cW-W 47 J.DG227 I.DC476 G-C WC 19-XIX cWW cW-W 48 J.DG228 I.DC475 G-C WC 19-XIX cWW cW-W 49 J.DA229 I.DT474 A-T WC 20-XX cWW cW-W 50 J.DG230 I.DC473 G-C WC 19-XIX cWW cW-W 51 J.DT231 I.DA472 T-A WC 20-XX cWW cW-W 52 J.DA232 I.DT471 A-T WC 20-XX cWW cW-W 53 J.DA233 I.DT470 A-T WC 20-XX cWW cW-W 54 J.DT234 I.DA469 T-A WC 20-XX cWW cW-W 55 J.DC235 I.DG468 C-G WC 19-XIX cWW cW-W 56 J.DC236 I.DG467 C-G WC 19-XIX cWW cW-W 57 J.DC237 I.DG466 C-G WC 19-XIX cWW cW-W 58 J.DC238 I.DG465 C-G WC 19-XIX cWW cW-W 59 J.DT239 I.DA464 T-A WC 20-XX cWW cW-W 60 J.DT240 I.DA463 T-A WC 20-XX cWW cW-W 61 J.DG241 I.DC462 G-C WC 19-XIX cWW cW-W 62 J.DG242 I.DC461 G-C WC 19-XIX cWW cW-W 63 J.DC243 I.DG460 C-G WC 19-XIX cWW cW-W 64 J.DG244 I.DC459 G-C WC 19-XIX cWW cW-W 65 J.DG245 I.DC458 G-C WC 19-XIX cWW cW-W 66 J.DT246 I.DA457 T-A WC 20-XX cWW cW-W 67 J.DT247 I.DA456 T-A WC 20-XX cWW cW-W 68 J.DA248 I.DT455 A-T WC 20-XX cWW cW-W 69 J.DA249 I.DT454 A-T WC 20-XX cWW cW-W 70 J.DA250 I.DT453 A-T WC 20-XX cWW cW-W 71 J.DA251 I.DT452 A-T WC 20-XX cWW cW-W 72 J.DC252 I.DG451 C-G WC 19-XIX cWW cW-W 73 J.DG253 I.DC450 G-C WC 19-XIX cWW cW-W 74 J.DC254 I.DG449 C-G WC 19-XIX cWW cW-W 75 J.DG255 I.DC448 G-C WC 19-XIX cWW cW-W 76 J.DG256 I.DC447 G-C WC 19-XIX cWW cW-W 77 J.DG257 I.DC446 G-C WC 19-XIX cWW cW-W 78 J.DG258 I.DC445 G-C WC 19-XIX cWW cW-W 79 J.DG259 I.DC444 G-C WC 19-XIX cWW cW-W 80 J.DA260 I.DT443 A-T WC 20-XX cWW cW-W 81 J.DC261 I.DG442 C-G WC 19-XIX cWW cW-W 82 J.DA262 I.DT441 A-T WC 20-XX cWW cW-W 83 J.DG263 I.DC440 G-C WC 19-XIX cWW cW-W 84 J.DC264 I.DG439 C-G WC 19-XIX cWW cW-W 85 J.DG265 I.DC438 G-C WC 19-XIX cWW cW-W 86 J.DC266 I.DG437 C-G WC 19-XIX cWW cW-W 87 J.DG267 I.DC436 G-C WC 19-XIX cWW cW-W 88 J.DT268 I.DA435 T-A WC 20-XX cWW cW-W 89 J.DA269 I.DT434 A-T WC 20-XX cWW cW-W 90 J.DC270 I.DG433 C-G WC 19-XIX cWW cW-W 91 J.DG271 I.DC432 G-C WC 19-XIX cWW cW-W 92 J.DT272 I.DA431 T-A WC 20-XX cWW cW-W 93 J.DG273 I.DC430 G-C WC 19-XIX cWW cW-W 94 J.DC274 I.DG429 C-G WC 19-XIX cWW cW-W 95 J.DG275 I.DC428 G-C WC 19-XIX cWW cW-W 96 J.DT276 I.DA427 T-A WC 20-XX cWW cW-W 97 J.DT277 I.DA426 T-A WC 20-XX cWW cW-W 98 J.DT278 I.DA425 T-A WC 20-XX cWW cW-W 99 J.DA279 I.DT424 A-T WC 20-XX cWW cW-W 100 J.DA280 I.DT423 A-T WC 20-XX cWW cW-W 101 J.DG281 I.DC422 G-C WC 19-XIX cWW cW-W 102 J.DC282 I.DG421 C-G WC 19-XIX cWW cW-W 103 J.DG283 I.DC420 G-C WC 19-XIX cWW cW-W 104 J.DG284 I.DC419 G-C WC 19-XIX cWW cW-W 105 J.DT285 I.DA418 T-A WC 20-XX cWW cW-W 106 J.DG286 I.DC417 G-C WC 19-XIX cWW cW-W 107 J.DC287 I.DG416 C-G WC 19-XIX cWW cW-W 108 J.DT288 I.DA415 T-A WC 20-XX cWW cW-W 109 J.DA289 I.DT414 A-T WC 20-XX cWW cW-W 110 J.DG290 I.DC413 G-C WC 19-XIX cWW cW-W 111 J.DA291 I.DT412 A-T WC 20-XX cWW cW-W 112 J.DG292 I.DC411 G-C WC 19-XIX cWW cW-W 113 J.DC293 I.DG410 C-G WC 19-XIX cWW cW-W 114 J.DT294 I.DA409 T-A WC 20-XX cWW cW-W 115 J.DG295 I.DC408 G-C WC 19-XIX cWW cW-W 116 J.DT296 I.DA407 T-A WC 20-XX cWW cW-W 117 J.DC297 I.DG406 C-G WC 19-XIX cWW cW-W 118 J.DT298 I.DA405 T-A WC 20-XX cWW cW-W 119 J.DA299 I.DT404 A-T WC 20-XX cWW cW-W 120 J.DC300 I.DG403 C-G WC 19-XIX cWW cW-W 121 J.DG301 I.DC402 G-C WC 19-XIX cWW cW-W 122 J.DA302 I.DT401 A-T WC 20-XX cWW cW-W 123 J.DC303 I.DG400 C-G WC 19-XIX cWW cW-W 124 J.DC304 I.DG399 C-G WC 19-XIX cWW cW-W 125 J.DA305 I.DT398 A-T WC 20-XX cWW cW-W 126 J.DA306 I.DT397 A-T WC 20-XX cWW cW-W 127 J.DT307 I.DA396 T-A WC 20-XX cWW cW-W 128 J.DT308 I.DA395 T-A WC 20-XX cWW cW-W 129 J.DG309 I.DC394 G-C WC 19-XIX cWW cW-W 130 J.DA310 I.DT393 A-T WC 20-XX cWW cW-W 131 J.DG311 I.DC392 G-C WC 19-XIX cWW cW-W 132 J.DC312 I.DG391 C-G WC 19-XIX cWW cW-W 133 J.DG313 I.DC390 G-C WC 19-XIX cWW cW-W 134 J.DG314 I.DC389 G-C WC 19-XIX cWW cW-W 135 J.DC315 I.DG388 C-G WC 19-XIX cWW cW-W 136 J.DC316 I.DG387 C-G WC 19-XIX cWW cW-W 137 J.DT317 I.DA386 T-A WC 20-XX cWW cW-W 138 J.DC318 I.DG385 C-G WC 19-XIX cWW cW-W 139 J.DG319 I.DC384 G-C WC 19-XIX cWW cW-W 140 J.DG320 I.DC383 G-C WC 19-XIX cWW cW-W 141 J.DC321 I.DG382 C-G WC 19-XIX cWW cW-W 142 J.DA322 I.DT381 A-T WC 20-XX cWW cW-W 143 J.DC323 I.DG380 C-G WC 19-XIX cWW cW-W 144 J.DC324 I.DG379 C-G WC 19-XIX cWW cW-W 145 J.DG325 I.DC378 G-C WC 19-XIX cWW cW-W 146 J.DG326 I.DC377 G-C WC 19-XIX cWW cW-W 147 J.DG327 I.DC376 G-C WC 19-XIX cWW cW-W 148 J.DA328 I.DT375 A-T WC 20-XX cWW cW-W 149 J.DT329 I.DA374 T-A WC 20-XX cWW cW-W 150 J.DT330 I.DA373 T-A WC 20-XX cWW cW-W 151 J.DC331 I.DG372 C-G WC 19-XIX cWW cW-W 152 J.DT332 I.DA371 T-A WC 20-XX cWW cW-W 153 J.DC333 I.DG370 C-G WC 19-XIX cWW cW-W 154 J.DC334 I.DG369 C-G WC 19-XIX cWW cW-W 155 J.DA335 I.DT368 A-T WC 20-XX cWW cW-W 156 J.DG336 I.DC367 G-C WC 19-XIX cWW cW-W 157 J.DG337 I.DC366 G-C WC 19-XIX cWW cW-W 158 J.DG338 I.DC365 G-C WC 19-XIX cWW cW-W 159 J.DG339 I.DC364 G-C WC 19-XIX cWW cW-W 160 J.DA340 I.DT363 A-T WC 20-XX cWW cW-W 161 J.DT341 I.DA362 T-A WC 20-XX cWW cW-W 162 J.DC342 I.DG361 C-G WC 19-XIX cWW cW-W 163 J.DC343 I.DG360 C-G WC 19-XIX cWW cW-W 164 J.DG344 I.DC359 G-C WC 19-XIX cWW cW-W 165 J.DG345 I.DC358 G-C WC 19-XIX cWW cW-W 166 J.DA346 I.DT357 A-T WC 20-XX cWW cW-W 167 J.DT347 I.DA356 T-A WC 20-XX cWW cW-W 168 J.DG348 I.DC355 G-C WC 19-XIX cWW cW-W 169 J.DC349 I.DG354 C-G WC 19-XIX cWW cW-W 170 J.DT350 I.DA353 T-A WC 20-XX cWW cW-W 171 J.DC351 I.DG352 C-G WC 19-XIX cWW cW-W **************************************************************************** List of 1 stem Note: A stem is defined as a helix consisting strictly of canonical WC/wobble pairs with a continuous backbone. stem#number[#helix-number containing this stem] Other terms are defined as in the above Helix section. -------------------------------------------------------------------- stem#1[#1] bps=171 strand-1 5'-GGCACTGGAACAGGATGTATATATGTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAGGGGATCCGGATGCTC-3' bp-type ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| strand-2 3'-CCGTGACCTTGTCCTACATATATACACTGTGCACGGACCTCTGATCCCTCATTAGGGGAACCGCCAATTTTGCGCCCCCTGTCGCGCATGCACGCAAATTCGCCACGATCTCGACAGATGCTGGTTAACTCGCCGGAGCCGTGGCCCTAAGAGGTCCCCTAGGCCTACGAG-5' helix-form BBBBBB....BBB..BBB.BBBBBB..BBBBB.....BBBBBB.BB.BBBBBB..B.B...B.....BBBBBBBB.BBBBBBBBBBBBBBBBBB..B.BBBB.BB...BBBBBB....BBBBB.B....BBBBBB....BBBB.BBBBBB....BBB....BBBBBBBBB 1 J.DG181 I.DC522 G-C WC 19-XIX cWW cW-W 2 J.DG182 I.DC521 G-C WC 19-XIX cWW cW-W 3 J.DC183 I.DG520 C-G WC 19-XIX cWW cW-W 4 J.DA184 I.DT519 A-T WC 20-XX cWW cW-W 5 J.DC185 I.DG518 C-G WC 19-XIX cWW cW-W 6 J.DT186 I.DA517 T-A WC 20-XX cWW cW-W 7 J.DG187 I.DC516 G-C WC 19-XIX cWW cW-W 8 J.DG188 I.DC515 G-C WC 19-XIX cWW cW-W 9 J.DA189 I.DT514 A-T WC 20-XX cWW cW-W 10 J.DA190 I.DT513 A-T WC 20-XX cWW cW-W 11 J.DC191 I.DG512 C-G WC 19-XIX cWW cW-W 12 J.DA192 I.DT511 A-T WC 20-XX cWW cW-W 13 J.DG193 I.DC510 G-C WC 19-XIX cWW cW-W 14 J.DG194 I.DC509 G-C WC 19-XIX cWW cW-W 15 J.DA195 I.DT508 A-T WC 20-XX cWW cW-W 16 J.DT196 I.DA507 T-A WC 20-XX cWW cW-W 17 J.DG197 I.DC506 G-C WC 19-XIX cWW cW-W 18 J.DT198 I.DA505 T-A WC 20-XX cWW cW-W 19 J.DA199 I.DT504 A-T WC 20-XX cWW cW-W 20 J.DT200 I.DA503 T-A WC 20-XX cWW cW-W 21 J.DA201 I.DT502 A-T WC 20-XX cWW cW-W 22 J.DT202 I.DA501 T-A WC 20-XX cWW cW-W 23 J.DA203 I.DT500 A-T WC 20-XX cWW cW-W 24 J.DT204 I.DA499 T-A WC 20-XX cWW cW-W 25 J.DG205 I.DC498 G-C WC 19-XIX cWW cW-W 26 J.DT206 I.DA497 T-A WC 20-XX cWW cW-W 27 J.DG207 I.DC496 G-C WC 19-XIX cWW cW-W 28 J.DA208 I.DT495 A-T WC 20-XX cWW cW-W 29 J.DC209 I.DG494 C-G WC 19-XIX cWW cW-W 30 J.DA210 I.DT493 A-T WC 20-XX cWW cW-W 31 J.DC211 I.DG492 C-G WC 19-XIX cWW cW-W 32 J.DG212 I.DC491 G-C WC 19-XIX cWW cW-W 33 J.DT213 I.DA490 T-A WC 20-XX cWW cW-W 34 J.DG214 I.DC489 G-C WC 19-XIX cWW cW-W 35 J.DC215 I.DG488 C-G WC 19-XIX cWW cW-W 36 J.DC216 I.DG487 C-G WC 19-XIX cWW cW-W 37 J.DT217 I.DA486 T-A WC 20-XX cWW cW-W 38 J.DG218 I.DC485 G-C WC 19-XIX cWW cW-W 39 J.DG219 I.DC484 G-C WC 19-XIX cWW cW-W 40 J.DA220 I.DT483 A-T WC 20-XX cWW cW-W 41 J.DG221 I.DC482 G-C WC 19-XIX cWW cW-W 42 J.DA222 I.DT481 A-T WC 20-XX cWW cW-W 43 J.DC223 I.DG480 C-G WC 19-XIX cWW cW-W 44 J.DT224 I.DA479 T-A WC 20-XX cWW cW-W 45 J.DA225 I.DT478 A-T WC 20-XX cWW cW-W 46 J.DG226 I.DC477 G-C WC 19-XIX cWW cW-W 47 J.DG227 I.DC476 G-C WC 19-XIX cWW cW-W 48 J.DG228 I.DC475 G-C WC 19-XIX cWW cW-W 49 J.DA229 I.DT474 A-T WC 20-XX cWW cW-W 50 J.DG230 I.DC473 G-C WC 19-XIX cWW cW-W 51 J.DT231 I.DA472 T-A WC 20-XX cWW cW-W 52 J.DA232 I.DT471 A-T WC 20-XX cWW cW-W 53 J.DA233 I.DT470 A-T WC 20-XX cWW cW-W 54 J.DT234 I.DA469 T-A WC 20-XX cWW cW-W 55 J.DC235 I.DG468 C-G WC 19-XIX cWW cW-W 56 J.DC236 I.DG467 C-G WC 19-XIX cWW cW-W 57 J.DC237 I.DG466 C-G WC 19-XIX cWW cW-W 58 J.DC238 I.DG465 C-G WC 19-XIX cWW cW-W 59 J.DT239 I.DA464 T-A WC 20-XX cWW cW-W 60 J.DT240 I.DA463 T-A WC 20-XX cWW cW-W 61 J.DG241 I.DC462 G-C WC 19-XIX cWW cW-W 62 J.DG242 I.DC461 G-C WC 19-XIX cWW cW-W 63 J.DC243 I.DG460 C-G WC 19-XIX cWW cW-W 64 J.DG244 I.DC459 G-C WC 19-XIX cWW cW-W 65 J.DG245 I.DC458 G-C WC 19-XIX cWW cW-W 66 J.DT246 I.DA457 T-A WC 20-XX cWW cW-W 67 J.DT247 I.DA456 T-A WC 20-XX cWW cW-W 68 J.DA248 I.DT455 A-T WC 20-XX cWW cW-W 69 J.DA249 I.DT454 A-T WC 20-XX cWW cW-W 70 J.DA250 I.DT453 A-T WC 20-XX cWW cW-W 71 J.DA251 I.DT452 A-T WC 20-XX cWW cW-W 72 J.DC252 I.DG451 C-G WC 19-XIX cWW cW-W 73 J.DG253 I.DC450 G-C WC 19-XIX cWW cW-W 74 J.DC254 I.DG449 C-G WC 19-XIX cWW cW-W 75 J.DG255 I.DC448 G-C WC 19-XIX cWW cW-W 76 J.DG256 I.DC447 G-C WC 19-XIX cWW cW-W 77 J.DG257 I.DC446 G-C WC 19-XIX cWW cW-W 78 J.DG258 I.DC445 G-C WC 19-XIX cWW cW-W 79 J.DG259 I.DC444 G-C WC 19-XIX cWW cW-W 80 J.DA260 I.DT443 A-T WC 20-XX cWW cW-W 81 J.DC261 I.DG442 C-G WC 19-XIX cWW cW-W 82 J.DA262 I.DT441 A-T WC 20-XX cWW cW-W 83 J.DG263 I.DC440 G-C WC 19-XIX cWW cW-W 84 J.DC264 I.DG439 C-G WC 19-XIX cWW cW-W 85 J.DG265 I.DC438 G-C WC 19-XIX cWW cW-W 86 J.DC266 I.DG437 C-G WC 19-XIX cWW cW-W 87 J.DG267 I.DC436 G-C WC 19-XIX cWW cW-W 88 J.DT268 I.DA435 T-A WC 20-XX cWW cW-W 89 J.DA269 I.DT434 A-T WC 20-XX cWW cW-W 90 J.DC270 I.DG433 C-G WC 19-XIX cWW cW-W 91 J.DG271 I.DC432 G-C WC 19-XIX cWW cW-W 92 J.DT272 I.DA431 T-A WC 20-XX cWW cW-W 93 J.DG273 I.DC430 G-C WC 19-XIX cWW cW-W 94 J.DC274 I.DG429 C-G WC 19-XIX cWW cW-W 95 J.DG275 I.DC428 G-C WC 19-XIX cWW cW-W 96 J.DT276 I.DA427 T-A WC 20-XX cWW cW-W 97 J.DT277 I.DA426 T-A WC 20-XX cWW cW-W 98 J.DT278 I.DA425 T-A WC 20-XX cWW cW-W 99 J.DA279 I.DT424 A-T WC 20-XX cWW cW-W 100 J.DA280 I.DT423 A-T WC 20-XX cWW cW-W 101 J.DG281 I.DC422 G-C WC 19-XIX cWW cW-W 102 J.DC282 I.DG421 C-G WC 19-XIX cWW cW-W 103 J.DG283 I.DC420 G-C WC 19-XIX cWW cW-W 104 J.DG284 I.DC419 G-C WC 19-XIX cWW cW-W 105 J.DT285 I.DA418 T-A WC 20-XX cWW cW-W 106 J.DG286 I.DC417 G-C WC 19-XIX cWW cW-W 107 J.DC287 I.DG416 C-G WC 19-XIX cWW cW-W 108 J.DT288 I.DA415 T-A WC 20-XX cWW cW-W 109 J.DA289 I.DT414 A-T WC 20-XX cWW cW-W 110 J.DG290 I.DC413 G-C WC 19-XIX cWW cW-W 111 J.DA291 I.DT412 A-T WC 20-XX cWW cW-W 112 J.DG292 I.DC411 G-C WC 19-XIX cWW cW-W 113 J.DC293 I.DG410 C-G WC 19-XIX cWW cW-W 114 J.DT294 I.DA409 T-A WC 20-XX cWW cW-W 115 J.DG295 I.DC408 G-C WC 19-XIX cWW cW-W 116 J.DT296 I.DA407 T-A WC 20-XX cWW cW-W 117 J.DC297 I.DG406 C-G WC 19-XIX cWW cW-W 118 J.DT298 I.DA405 T-A WC 20-XX cWW cW-W 119 J.DA299 I.DT404 A-T WC 20-XX cWW cW-W 120 J.DC300 I.DG403 C-G WC 19-XIX cWW cW-W 121 J.DG301 I.DC402 G-C WC 19-XIX cWW cW-W 122 J.DA302 I.DT401 A-T WC 20-XX cWW cW-W 123 J.DC303 I.DG400 C-G WC 19-XIX cWW cW-W 124 J.DC304 I.DG399 C-G WC 19-XIX cWW cW-W 125 J.DA305 I.DT398 A-T WC 20-XX cWW cW-W 126 J.DA306 I.DT397 A-T WC 20-XX cWW cW-W 127 J.DT307 I.DA396 T-A WC 20-XX cWW cW-W 128 J.DT308 I.DA395 T-A WC 20-XX cWW cW-W 129 J.DG309 I.DC394 G-C WC 19-XIX cWW cW-W 130 J.DA310 I.DT393 A-T WC 20-XX cWW cW-W 131 J.DG311 I.DC392 G-C WC 19-XIX cWW cW-W 132 J.DC312 I.DG391 C-G WC 19-XIX cWW cW-W 133 J.DG313 I.DC390 G-C WC 19-XIX cWW cW-W 134 J.DG314 I.DC389 G-C WC 19-XIX cWW cW-W 135 J.DC315 I.DG388 C-G WC 19-XIX cWW cW-W 136 J.DC316 I.DG387 C-G WC 19-XIX cWW cW-W 137 J.DT317 I.DA386 T-A WC 20-XX cWW cW-W 138 J.DC318 I.DG385 C-G WC 19-XIX cWW cW-W 139 J.DG319 I.DC384 G-C WC 19-XIX cWW cW-W 140 J.DG320 I.DC383 G-C WC 19-XIX cWW cW-W 141 J.DC321 I.DG382 C-G WC 19-XIX cWW cW-W 142 J.DA322 I.DT381 A-T WC 20-XX cWW cW-W 143 J.DC323 I.DG380 C-G WC 19-XIX cWW cW-W 144 J.DC324 I.DG379 C-G WC 19-XIX cWW cW-W 145 J.DG325 I.DC378 G-C WC 19-XIX cWW cW-W 146 J.DG326 I.DC377 G-C WC 19-XIX cWW cW-W 147 J.DG327 I.DC376 G-C WC 19-XIX cWW cW-W 148 J.DA328 I.DT375 A-T WC 20-XX cWW cW-W 149 J.DT329 I.DA374 T-A WC 20-XX cWW cW-W 150 J.DT330 I.DA373 T-A WC 20-XX cWW cW-W 151 J.DC331 I.DG372 C-G WC 19-XIX cWW cW-W 152 J.DT332 I.DA371 T-A WC 20-XX cWW cW-W 153 J.DC333 I.DG370 C-G WC 19-XIX cWW cW-W 154 J.DC334 I.DG369 C-G WC 19-XIX cWW cW-W 155 J.DA335 I.DT368 A-T WC 20-XX cWW cW-W 156 J.DG336 I.DC367 G-C WC 19-XIX cWW cW-W 157 J.DG337 I.DC366 G-C WC 19-XIX cWW cW-W 158 J.DG338 I.DC365 G-C WC 19-XIX cWW cW-W 159 J.DG339 I.DC364 G-C WC 19-XIX cWW cW-W 160 J.DA340 I.DT363 A-T WC 20-XX cWW cW-W 161 J.DT341 I.DA362 T-A WC 20-XX cWW cW-W 162 J.DC342 I.DG361 C-G WC 19-XIX cWW cW-W 163 J.DC343 I.DG360 C-G WC 19-XIX cWW cW-W 164 J.DG344 I.DC359 G-C WC 19-XIX cWW cW-W 165 J.DG345 I.DC358 G-C WC 19-XIX cWW cW-W 166 J.DA346 I.DT357 A-T WC 20-XX cWW cW-W 167 J.DT347 I.DA356 T-A WC 20-XX cWW cW-W 168 J.DG348 I.DC355 G-C WC 19-XIX cWW cW-W 169 J.DC349 I.DG354 C-G WC 19-XIX cWW cW-W 170 J.DT350 I.DA353 T-A WC 20-XX cWW cW-W 171 J.DC351 I.DG352 C-G WC 19-XIX cWW cW-W **************************************************************************** Secondary structures in dot-bracket notation (dbn) as a whole and per chain >7pey nts=342 [whole] GGCACTGGAACAGGATGTATATATGTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAGGGGATCCGGATGCTC&GAGCATCCGGATCCCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCACATATATACATCCTGTTCCAGTGCC (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((&))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))) >7pey-J #1 nts=171 0.39(2.32) [chain] DNA GGCACTGGAACAGGATGTATATATGTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAGGGGATCCGGATGCTC ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((( >7pey-I #2 nts=171 0.32(2.26) [chain] DNA GAGCATCCGGATCCCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCACATATATACATCCTGTTCCAGTGCC ))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))) **************************************************************************** Summary of structural features of 342 nucleotides Note: the first five columns are: (1) serial number, (2) one-letter shorthand name, (3) dbn, (4) id string, (5) rmsd (~zero) of base ring atoms fitted against those in a standard base reference frame. The sixth (last) column contains a comma-separated list of features whose meanings are mostly self-explanatory, except for: turn: angle C1'(i-1)--C1'(i)--C1'(i+1) < 90 degrees break: no backbone linkage between O3'(i-1) and P(i) 1 G ( J.DG181 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end 2 G ( J.DG182 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 3 C ( J.DC183 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 4 A ( J.DA184 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 5 C ( J.DC185 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 6 T ( J.DT186 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 7 G ( J.DG187 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 8 G ( J.DG188 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 9 A ( J.DA189 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 10 A ( J.DA190 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 11 C ( J.DC191 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 12 A ( J.DA192 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 13 G ( J.DG193 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 14 G ( J.DG194 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 15 A ( J.DA195 0.009 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 16 T ( J.DT196 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 17 G ( J.DG197 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 18 T ( J.DT198 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 19 A ( J.DA199 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 20 T ( J.DT200 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 21 A ( J.DA201 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 22 T ( J.DT202 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 23 A ( J.DA203 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 24 T ( J.DT204 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 25 G ( J.DG205 0.009 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 26 T ( J.DT206 0.005 ~C2'-endo,BII,canonical,non-pair-contact,helix,stem 27 G ( J.DG207 0.010 ~C2'-endo,BII,canonical,non-pair-contact,helix,stem 28 A ( J.DA208 0.009 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 29 C ( J.DC209 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 30 A ( J.DA210 0.010 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 31 C ( J.DC211 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 32 G ( J.DG212 0.009 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 33 T ( J.DT213 0.009 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 34 G ( J.DG214 0.011 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 35 C ( J.DC215 0.013 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 36 C ( J.DC216 0.006 ~C2'-endo,BII,canonical,non-pair-contact,helix,stem 37 T ( J.DT217 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 38 G ( J.DG218 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 39 G ( J.DG219 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 40 A ( J.DA220 0.009 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 41 G ( J.DG221 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 42 A ( J.DA222 0.008 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem 43 C ( J.DC223 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 44 T ( J.DT224 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 45 A ( J.DA225 0.006 BI,canonical,non-pair-contact,helix,stem 46 G ( J.DG226 0.008 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 47 G ( J.DG227 0.007 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 48 G ( J.DG228 0.010 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 49 A ( J.DA229 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 50 G ( J.DG230 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 51 T ( J.DT231 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 52 A ( J.DA232 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 53 A ( J.DA233 0.009 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 54 T ( J.DT234 0.009 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 55 C ( J.DC235 0.009 ~C2'-endo,BII,canonical,non-pair-contact,helix,stem 56 C ( J.DC236 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 57 C ( J.DC237 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 58 C ( J.DC238 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 59 T ( J.DT239 0.009 anti,BI,canonical,non-pair-contact,helix,stem 60 T ( J.DT240 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 61 G ( J.DG241 0.010 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 62 G ( J.DG242 0.009 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 63 C ( J.DC243 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 64 G ( J.DG244 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 65 G ( J.DG245 0.009 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 66 T ( J.DT246 0.008 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 67 T ( J.DT247 0.008 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 68 A ( J.DA248 0.009 ~C2'-endo,canonical,non-pair-contact,helix,stem 69 A ( J.DA249 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 70 A ( J.DA250 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 71 A ( J.DA251 0.009 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 72 C ( J.DC252 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 73 G ( J.DG253 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 74 C ( J.DC254 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 75 G ( J.DG255 0.010 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 76 G ( J.DG256 0.010 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 77 G ( J.DG257 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 78 G ( J.DG258 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 79 G ( J.DG259 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 80 A ( J.DA260 0.006 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,phosphate 81 C ( J.DC261 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 82 A ( J.DA262 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 83 G ( J.DG263 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 84 C ( J.DC264 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 85 G ( J.DG265 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 86 C ( J.DC266 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 87 G ( J.DG267 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 88 T ( J.DT268 0.007 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 89 A ( J.DA269 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 90 C ( J.DC270 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 91 G ( J.DG271 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 92 T ( J.DT272 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 93 G ( J.DG273 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 94 C ( J.DC274 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 95 G ( J.DG275 0.010 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 96 T ( J.DT276 0.009 anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem 97 T ( J.DT277 0.006 BI,canonical,non-pair-contact,helix,stem 98 T ( J.DT278 0.007 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 99 A ( J.DA279 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 100 A ( J.DA280 0.010 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 101 G ( J.DG281 0.011 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 102 C ( J.DC282 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 103 G ( J.DG283 0.010 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 104 G ( J.DG284 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 105 T ( J.DT285 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 106 G ( J.DG286 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 107 C ( J.DC287 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 108 T ( J.DT288 0.009 anti,~C2'-endo,BII,canonical,non-canonical,non-pair-contact,helix,stem 109 A ( J.DA289 0.009 ~C2'-endo,BI,canonical,non-pair-contact,helix,stem 110 G ( J.DG290 0.008 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 111 A ( J.DA291 0.012 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 112 G ( J.DG292 0.010 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 113 C ( J.DC293 0.010 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 114 T ( J.DT294 0.009 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 115 G ( J.DG295 0.010 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 116 T ( J.DT296 0.009 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 117 C ( J.DC297 0.008 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 118 T ( J.DT298 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 119 A ( J.DA299 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 120 C ( J.DC300 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 121 G ( J.DG301 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 122 A ( J.DA302 0.010 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,phosphate 123 C ( J.DC303 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 124 C ( J.DC304 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 125 A ( J.DA305 0.010 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 126 A ( J.DA306 0.009 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 127 T ( J.DT307 0.008 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 128 T ( J.DT308 0.007 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 129 G ( J.DG309 0.009 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 130 A ( J.DA310 0.009 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 131 G ( J.DG311 0.014 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 132 C ( J.DC312 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 133 G ( J.DG313 0.012 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 134 G ( J.DG314 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 135 C ( J.DC315 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 136 C ( J.DC316 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 137 T ( J.DT317 0.007 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem 138 C ( J.DC318 0.007 ~C2'-endo,BII,canonical,non-pair-contact,helix,stem 139 G ( J.DG319 0.010 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 140 G ( J.DG320 0.011 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 141 C ( J.DC321 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 142 A ( J.DA322 0.010 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 143 C ( J.DC323 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 144 C ( J.DC324 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 145 G ( J.DG325 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 146 G ( J.DG326 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 147 G ( J.DG327 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 148 A ( J.DA328 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 149 T ( J.DT329 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 150 T ( J.DT330 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 151 C ( J.DC331 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 152 T ( J.DT332 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 153 C ( J.DC333 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 154 C ( J.DC334 0.006 anti,~C2'-endo,BII,canonical,non-canonical,non-pair-contact,helix,stem 155 A ( J.DA335 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 156 G ( J.DG336 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 157 G ( J.DG337 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 158 G ( J.DG338 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 159 G ( J.DG339 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 160 A ( J.DA340 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 161 T ( J.DT341 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 162 C ( J.DC342 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 163 C ( J.DC343 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 164 G ( J.DG344 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 165 G ( J.DG345 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 166 A ( J.DA346 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 167 T ( J.DT347 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 168 G ( J.DG348 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 169 C ( J.DC349 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 170 T ( J.DT350 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 171 C ( J.DC351 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end 172 G ) I.DG352 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end 173 A ) I.DA353 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 174 G ) I.DG354 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 175 C ) I.DC355 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 176 A ) I.DA356 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 177 T ) I.DT357 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 178 C ) I.DC358 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 179 C ) I.DC359 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 180 G ) I.DG360 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 181 G ) I.DG361 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 182 A ) I.DA362 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 183 T ) I.DT363 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 184 C ) I.DC364 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 185 C ) I.DC365 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 186 C ) I.DC366 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 187 C ) I.DC367 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 188 T ) I.DT368 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 189 G ) I.DG369 0.009 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 190 G ) I.DG370 0.008 anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem 191 A ) I.DA371 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 192 G ) I.DG372 0.009 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 193 A ) I.DA373 0.011 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 194 A ) I.DA374 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 195 T ) I.DT375 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 196 C ) I.DC376 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 197 C ) I.DC377 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 198 C ) I.DC378 0.008 anti,BI,canonical,non-pair-contact,helix,stem 199 G ) I.DG379 0.009 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 200 G ) I.DG380 0.010 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 201 T ) I.DT381 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 202 G ) I.DG382 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 203 C ) I.DC383 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 204 C ) I.DC384 0.008 ~C2'-endo,BII,canonical,non-pair-contact,helix,stem 205 G ) I.DG385 0.016 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 206 A ) I.DA386 0.010 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 207 G ) I.DG387 0.010 anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem,phosphate 208 G ) I.DG388 0.010 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 209 C ) I.DC389 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 210 C ) I.DC390 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 211 G ) I.DG391 0.010 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 212 C ) I.DC392 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 213 T ) I.DT393 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 214 C ) I.DC394 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 215 A ) I.DA395 0.010 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 216 A ) I.DA396 0.009 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 217 T ) I.DT397 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 218 T ) I.DT398 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 219 G ) I.DG399 0.007 anti,BI,canonical,non-pair-contact,helix,stem 220 G ) I.DG400 0.006 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem 221 T ) I.DT401 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 222 C ) I.DC402 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 223 G ) I.DG403 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 224 T ) I.DT404 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 225 A ) I.DA405 0.011 ~C2'-endo,BI,canonical,non-pair-contact,helix,stem 226 G ) I.DG406 0.013 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 227 A ) I.DA407 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 228 C ) I.DC408 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 229 A ) I.DA409 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 230 G ) I.DG410 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 231 C ) I.DC411 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 232 T ) I.DT412 0.008 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 233 C ) I.DC413 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 234 T ) I.DT414 0.008 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 235 A ) I.DA415 0.011 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 236 G ) I.DG416 0.008 anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem 237 C ) I.DC417 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 238 A ) I.DA418 0.009 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 239 C ) I.DC419 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 240 C ) I.DC420 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 241 G ) I.DG421 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 242 C ) I.DC422 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 243 T ) I.DT423 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 244 T ) I.DT424 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 245 A ) I.DA425 0.010 ~C2'-endo,BI,canonical,non-pair-contact,helix,stem 246 A ) I.DA426 0.011 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 247 A ) I.DA427 0.011 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 248 C ) I.DC428 0.007 anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem 249 G ) I.DG429 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 250 C ) I.DC430 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 251 A ) I.DA431 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 252 C ) I.DC432 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 253 G ) I.DG433 0.009 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 254 T ) I.DT434 0.007 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 255 A ) I.DA435 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 256 C ) I.DC436 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 257 G ) I.DG437 0.009 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 258 C ) I.DC438 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 259 G ) I.DG439 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 260 C ) I.DC440 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 261 T ) I.DT441 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 262 G ) I.DG442 0.008 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem 263 T ) I.DT443 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 264 C ) I.DC444 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 265 C ) I.DC445 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 266 C ) I.DC446 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 267 C ) I.DC447 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 268 C ) I.DC448 0.010 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 269 G ) I.DG449 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 270 C ) I.DC450 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 271 G ) I.DG451 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 272 T ) I.DT452 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 273 T ) I.DT453 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 274 T ) I.DT454 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 275 T ) I.DT455 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 276 A ) I.DA456 0.008 ~C2'-endo,BII,canonical,non-pair-contact,helix,stem 277 A ) I.DA457 0.011 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 278 C ) I.DC458 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 279 C ) I.DC459 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 280 G ) I.DG460 0.012 anti,canonical,non-pair-contact,helix,stem 281 C ) I.DC461 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 282 C ) I.DC462 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 283 A ) I.DA463 0.009 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 284 A ) I.DA464 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 285 G ) I.DG465 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 286 G ) I.DG466 0.007 BI,canonical,non-pair-contact,helix,stem 287 G ) I.DG467 0.009 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 288 G ) I.DG468 0.014 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 289 A ) I.DA469 0.012 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 290 T ) I.DT470 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 291 T ) I.DT471 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 292 A ) I.DA472 0.009 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 293 C ) I.DC473 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 294 T ) I.DT474 0.005 anti,canonical,non-pair-contact,helix,stem 295 C ) I.DC475 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 296 C ) I.DC476 0.006 ~C2'-endo,BI,canonical,non-pair-contact,helix,stem 297 C ) I.DC477 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 298 T ) I.DT478 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 299 A ) I.DA479 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 300 G ) I.DG480 0.005 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem 301 T ) I.DT481 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 302 C ) I.DC482 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 303 T ) I.DT483 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 304 C ) I.DC484 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 305 C ) I.DC485 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 306 A ) I.DA486 0.009 ~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 307 G ) I.DG487 0.010 ~C2'-endo,canonical,non-pair-contact,helix,stem 308 G ) I.DG488 0.010 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 309 C ) I.DC489 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 310 A ) I.DA490 0.012 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 311 C ) I.DC491 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 312 G ) I.DG492 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 313 T ) I.DT493 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 314 G ) I.DG494 0.009 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 315 T ) I.DT495 0.009 ~C2'-endo,BII,canonical,non-pair-contact,helix,stem 316 C ) I.DC496 0.008 ~C2'-endo,BII,canonical,non-pair-contact,helix,stem 317 A ) I.DA497 0.009 ~C2'-endo,BI,canonical,non-pair-contact,helix,stem 318 C ) I.DC498 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 319 A ) I.DA499 0.010 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 320 T ) I.DT500 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 321 A ) I.DA501 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 322 T ) I.DT502 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 323 A ) I.DA503 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 324 T ) I.DT504 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 325 A ) I.DA505 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 326 C ) I.DC506 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 327 A ) I.DA507 0.010 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 328 T ) I.DT508 0.007 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 329 C ) I.DC509 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 330 C ) I.DC510 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 331 T ) I.DT511 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 332 G ) I.DG512 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 333 T ) I.DT513 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 334 T ) I.DT514 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 335 C ) I.DC515 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 336 C ) I.DC516 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 337 A ) I.DA517 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 338 G ) I.DG518 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 339 T ) I.DT519 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 340 G ) I.DG520 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 341 C ) I.DC521 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 342 C ) I.DC522 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end **************************************************************************** List of 11 additional files 1 dssr-pairs.pdb -- an ensemble of base pairs 2 dssr-stems.pdb -- an ensemble of stems 3 dssr-helices.pdb -- an ensemble of helices (coaxial stacking) 4 dssr-2ndstrs.bpseq -- secondary structure in bpseq format 5 dssr-2ndstrs.ct -- secondary structure in connectivity table format 6 dssr-2ndstrs.dbn -- secondary structure in dot-bracket notation 7 dssr-torsions.txt -- backbone torsion angles and suite names 8 dssr-rotmat.txt -- position vector and rotation matrix 9 dssr-viewV.pdb -- vertical view of the principal moment of inertia 10 dssr-viewH.pdb -- horizontal view of the principal moment of inertia 11 dssr-viewT.pdb -- top view of the principal moment of inertia