**************************************************************************** File name: 8x7j.pdb no. of DNA/RNA chains: 2 [I=144,J=144] no. of nucleotides: 288 no. of atoms: 13739 no. of waters: 0 no. of metals: 2 [Zn=2] **************************************************************************** List of 150 base pairs nt1 nt2 bp name Saenger LW DSSR 1 I.DC-72 J.DG72 C-G WC 19-XIX cWW cW-W 2 I.DA-71 J.DT71 A-T WC 20-XX cWW cW-W 3 I.DG-70 J.DC70 G-C WC 19-XIX cWW cW-W 4 I.DG-69 J.DC69 G-C WC 19-XIX cWW cW-W 5 I.DA-68 J.DT68 A-T WC 20-XX cWW cW-W 6 I.DT-67 J.DA67 T-A WC 20-XX cWW cW-W 7 I.DG-66 J.DC66 G-C WC 19-XIX cWW cW-W 8 I.DT-65 J.DA65 T-A WC 20-XX cWW cW-W 9 I.DA-64 J.DT64 A-T WC 20-XX cWW cW-W 10 I.DT-63 J.DA63 T-A WC 20-XX cWW cW-W 11 I.DA-62 J.DT62 A-T WC 20-XX cWW cW-W 12 I.DT-61 J.DA61 T-A WC 20-XX cWW cW-W 13 I.DA-60 J.DT60 A-T WC 20-XX cWW cW-W 14 I.DT-59 J.DA59 T-A WC 20-XX cWW cW-W 15 I.DC-58 J.DG58 C-G WC 19-XIX cWW cW-W 16 I.DT-57 J.DA57 T-A WC 20-XX cWW cW-W 17 I.DG-56 J.DC56 G-C WC 19-XIX cWW cW-W 18 I.DA-55 J.DT55 A-T WC 20-XX cWW cW-W 19 I.DC-54 J.DG54 C-G WC 19-XIX cWW cW-W 20 I.DA-53 J.DT53 A-T WC 20-XX cWW cW-W 21 I.DC-52 J.DG52 C-G WC 19-XIX cWW cW-W 22 I.DG-51 J.DC51 G-C WC 19-XIX cWW cW-W 23 I.DT-50 J.DA50 T-A WC 20-XX cWW cW-W 24 I.DG-49 J.DC49 G-C WC 19-XIX cWW cW-W 25 I.DC-48 J.DG48 C-G WC 19-XIX cWW cW-W 26 I.DC-47 J.DG47 C-G WC 19-XIX cWW cW-W 27 I.DT-46 J.DA46 T-A WC 20-XX cWW cW-W 28 I.DG-45 J.DC45 G-C WC 19-XIX cWW cW-W 29 I.DG-44 J.DC44 G-C WC 19-XIX cWW cW-W 30 I.DA-43 J.DT43 A-T WC 20-XX cWW cW-W 31 I.DG-42 J.DC42 G-C WC 19-XIX cWW cW-W 32 I.DA-41 J.DG40 A-G -- -- cWW cW-W 33 I.DA-41 J.DT41 A-T WC 20-XX cWW cW-W 34 I.DC-40 J.DG40 C-G WC 19-XIX cWW cW-W 35 I.DT-39 J.DA39 T-A WC 20-XX cWW cW-W 36 I.DA-38 J.DT38 A-T WC 20-XX cWW cW-W 37 I.DG-37 J.DC37 G-C WC 19-XIX cWW cW-W 38 I.DG-36 J.DC36 G-C WC 19-XIX cWW cW-W 39 I.DG-35 J.DC35 G-C WC 19-XIX cWW cW-W 40 I.DA-34 J.DT34 A-T WC 20-XX cWW cW-W 41 I.DG-33 J.DC33 G-C WC 19-XIX cWW cW-W 42 I.DG-33 J.DT34 G-T -- -- cWW cW-W 43 I.DT-32 J.DA32 T-A WC 20-XX cWW cW-W 44 I.DA-31 J.DT31 A-T WC 20-XX cWW cW-W 45 I.DA-30 J.DT30 A-T WC 20-XX cWW cW-W 46 I.DA-30 J.DT31 A-T -- -- cWW cW-W 47 I.DT-29 J.DA29 T-A WC 20-XX cWW cW-W 48 I.DC-28 J.DG28 C-G WC 19-XIX cWW cW-W 49 I.DC-27 J.DG27 C-G WC 19-XIX cWW cW-W 50 I.DC-26 J.DG26 C-G WC 19-XIX cWW cW-W 51 I.DC-25 J.DG25 C-G WC 19-XIX cWW cW-W 52 I.DT-24 J.DA24 T-A WC 20-XX cWW cW-W 53 I.DT-23 J.DA23 T-A WC 20-XX cWW cW-W 54 I.DG-22 J.DC22 G-C WC 19-XIX cWW cW-W 55 I.DG-21 J.DC21 G-C WC 19-XIX cWW cW-W 56 I.DC-20 J.DG20 C-G WC 19-XIX cWW cW-W 57 I.DG-19 J.DC19 G-C WC 19-XIX cWW cW-W 58 I.DG-18 J.DC18 G-C WC 19-XIX cWW cW-W 59 I.DT-17 J.DA17 T-A WC 20-XX cWW cW-W 60 I.DT-16 J.DA16 T-A WC 20-XX cWW cW-W 61 I.DA-15 J.DT15 A-T WC 20-XX cWW cW-W 62 I.DA-14 J.DT14 A-T WC 20-XX cWW cW-W 63 I.DA-13 J.DT13 A-T WC 20-XX cWW cW-W 64 I.DA-12 J.DT12 A-T WC 20-XX cWW cW-W 65 I.DC-11 J.DG11 C-G WC 19-XIX cWW cW-W 66 I.DG-10 J.DC10 G-C WC 19-XIX cWW cW-W 67 I.DC-9 J.DG9 C-G WC 19-XIX cWW cW-W 68 I.DG-8 J.DC8 G-C WC 19-XIX cWW cW-W 69 I.DG-7 J.DC7 G-C WC 19-XIX cWW cW-W 70 I.DG-6 J.DC6 G-C WC 19-XIX cWW cW-W 71 I.DG-5 J.DC5 G-C WC 19-XIX cWW cW-W 72 I.DG-4 J.DC4 G-C WC 19-XIX cWW cW-W 73 I.DA-3 J.DT3 A-T WC 20-XX cWW cW-W 74 I.DC-2 J.DG2 C-G WC 19-XIX cWW cW-W 75 I.DA-1 J.DT1 A-T WC 20-XX cWW cW-W 76 I.DG0 J.DC0 G-C WC 19-XIX cWW cW-W 77 I.DC1 J.DG-1 C-G WC 19-XIX cWW cW-W 78 I.DG2 J.DC-2 G-C WC 19-XIX cWW cW-W 79 I.DC3 J.DG-3 C-G WC 19-XIX cWW cW-W 80 I.DG4 J.DC-4 G-C WC 19-XIX cWW cW-W 81 I.DT5 J.DA-5 T-A WC 20-XX cWW cW-W 82 I.DA6 J.DT-6 A-T WC 20-XX cWW cW-W 83 I.DC7 J.DG-7 C-G WC 19-XIX cWW cW-W 84 I.DG8 J.DC-8 G-C WC 19-XIX cWW cW-W 85 I.DT9 J.DA-9 T-A WC 20-XX cWW cW-W 86 I.DG10 J.DC-10 G-C WC 19-XIX cWW cW-W 87 I.DC11 J.DG-11 C-G WC 19-XIX cWW cW-W 88 I.DG12 J.DC-12 G-C WC 19-XIX cWW cW-W 89 I.DT13 J.DA-13 T-A WC 20-XX cWW cW-W 90 I.DT14 J.DA-14 T-A WC 20-XX cWW cW-W 91 I.DT15 J.DA-15 T-A WC 20-XX cWW cW-W 92 I.DA16 J.DT-16 A-T WC 20-XX cWW cW-W 93 I.DA17 J.DT-17 A-T WC 20-XX cWW cW-W 94 I.DG18 J.DC-18 G-C WC 19-XIX cWW cW-W 95 I.DC19 J.DG-19 C-G WC 19-XIX cWW cW-W 96 I.DG20 J.DC-21 G-C -- -- cWW cW-W 97 I.DG20 J.DC-20 G-C WC 19-XIX cWW cW-W 98 I.DG21 J.DA-22 G-A -- -- cWW cW-W 99 I.DG21 J.DC-21 G-C WC 19-XIX cWW cW-W 100 I.DT22 J.DA-22 T-A WC 20-XX cWW cW-W 101 I.DG23 J.DC-23 G-C WC 19-XIX cWW cW-W 102 I.DC24 J.DG-24 C-G WC 19-XIX cWW cW-W 103 I.DT25 J.DA-25 T-A WC 20-XX cWW cW-W 104 I.DA26 J.DT-26 A-T WC 20-XX cWW cW-W 105 I.DG27 J.DC-27 G-C WC 19-XIX cWW cW-W 106 I.DA28 J.DT-28 A-T WC 20-XX cWW cW-W 107 I.DG29 J.DC-29 G-C WC 19-XIX cWW cW-W 108 I.DC30 J.DG-30 C-G WC 19-XIX cWW cW-W 109 I.DT31 J.DA-31 T-A WC 20-XX cWW cW-W 110 I.DG32 J.DC-32 G-C WC 19-XIX cWW cW-W 111 I.DT33 J.DA-33 T-A WC 20-XX cWW cW-W 112 I.DC34 J.DG-34 C-G WC 19-XIX cWW cW-W 113 I.DT35 J.DA-35 T-A WC 20-XX cWW cW-W 114 I.DA36 J.DT-36 A-T WC 20-XX cWW cW-W 115 I.DC37 J.DG-37 C-G WC 19-XIX cWW cW-W 116 I.DG38 J.DC-38 G-C WC 19-XIX cWW cW-W 117 I.DA39 J.DT-39 A-T WC 20-XX cWW cW-W 118 I.DC40 J.DG-40 C-G WC 19-XIX cWW cW-W 119 I.DC41 J.DG-41 C-G WC 19-XIX cWW cW-W 120 I.DA42 J.DT-43 A-T -- -- cWW cW-W 121 I.DA42 J.DT-42 A-T WC 20-XX cWW cW-W 122 I.DA43 J.DT-43 A-T WC 20-XX cWW cW-W 123 I.DT44 J.DA-44 T-A WC 20-XX cWW cW-W 124 I.DT45 J.DA-45 T-A WC 20-XX cWW cW-W 125 I.DG46 J.DC-46 G-C WC 19-XIX cWW cW-W 126 I.DA47 J.DT-47 A-T WC 20-XX cWW cW-W 127 I.DG48 J.DC-48 G-C WC 19-XIX cWW cW-W 128 I.DC49 J.DG-49 C-G WC 19-XIX cWW cW-W 129 I.DG50 J.DC-50 G-C WC 19-XIX cWW cW-W 130 I.DG51 J.DC-51 G-C WC 19-XIX cWW cW-W 131 I.DC52 J.DG-52 C-G WC 19-XIX cWW cW-W 132 I.DC53 J.DG-53 C-G WC 19-XIX cWW cW-W 133 I.DT54 J.DA-54 T-A WC 20-XX cWW cW-W 134 I.DC55 J.DG-55 C-G WC 19-XIX cWW cW-W 135 I.DG56 J.DC-56 G-C WC 19-XIX cWW cW-W 136 I.DG57 J.DC-57 G-C WC 19-XIX cWW cW-W 137 I.DC58 J.DG-58 C-G WC 19-XIX cWW cW-W 138 I.DA59 J.DT-59 A-T WC 20-XX cWW cW-W 139 I.DC60 J.DG-60 C-G WC 19-XIX cWW cW-W 140 I.DC61 J.DG-61 C-G WC 19-XIX cWW cW-W 141 I.DG62 J.DC-62 G-C WC 19-XIX cWW cW-W 142 I.DG63 J.DC-63 G-C WC 19-XIX cWW cW-W 143 I.DG64 J.DC-64 G-C WC 19-XIX cWW cW-W 144 I.DA65 J.DT-65 A-T WC 20-XX cWW cW-W 145 I.DT66 J.DA-66 T-A WC 20-XX cWW cW-W 146 I.DT67 J.DA-67 T-A WC 20-XX cWW cW-W 147 I.DC68 J.DG-68 C-G WC 19-XIX cWW cW-W 148 I.DT69 J.DA-69 T-A WC 20-XX cWW cW-W 149 I.DC70 J.DG-70 C-G WC 19-XIX cWW cW-W 150 I.DC71 J.DG-71 C-G WC 19-XIX cWW cW-W **************************************************************************** List of 1 helix Note: A helix is defined by base-stacking interactions, regardless of pair type and backbone connectivity, and may contain more than one stem. helix#number[stems-contained] bps=number-of-base-pairs in the helix bp-type: '|' for a canonical WC/wobble pair, '.' otherwise helix-form: classification of a dinucleotide step comprising the bp above the given designation and the bp that follows it. Types include 'A', 'B' or 'Z' for the common A-, B- and Z-form helices, '.' for an unclassified step, and 'x' for a step without a continuous backbone. -------------------------------------------------------------------- helix#1[1] bps=144 strand-1 5'-CAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCC-3' bp-type |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| strand-2 3'-GTCCTACATATATAGACTGTGCACGGACCTCTGATCCCTCATTAGGGGAACCGCCAATTTTGCGCCCCCTGTCGCGCATGCACGCAAATTCGCCACGATCTCGACAGATGCTGGTTAACTCGCCGGAGCCGTGGCCCTAAGAGG-5' helix-form BBBBBB...BB...B..B......B..BBBBBBBBB.B.....BBB.BBBBBBB.B.BBBBBBBBBB...B.BB.BB.B.BBBBBBB.BBBB..BBB.BBBBBBBBB.BBBBBBBBBB..B..B.BB..BB.B.BBBBBBBBB 1 I.DC-72 J.DG72 C-G WC 19-XIX cWW cW-W 2 I.DA-71 J.DT71 A-T WC 20-XX cWW cW-W 3 I.DG-70 J.DC70 G-C WC 19-XIX cWW cW-W 4 I.DG-69 J.DC69 G-C WC 19-XIX cWW cW-W 5 I.DA-68 J.DT68 A-T WC 20-XX cWW cW-W 6 I.DT-67 J.DA67 T-A WC 20-XX cWW cW-W 7 I.DG-66 J.DC66 G-C WC 19-XIX cWW cW-W 8 I.DT-65 J.DA65 T-A WC 20-XX cWW cW-W 9 I.DA-64 J.DT64 A-T WC 20-XX cWW cW-W 10 I.DT-63 J.DA63 T-A WC 20-XX cWW cW-W 11 I.DA-62 J.DT62 A-T WC 20-XX cWW cW-W 12 I.DT-61 J.DA61 T-A WC 20-XX cWW cW-W 13 I.DA-60 J.DT60 A-T WC 20-XX cWW cW-W 14 I.DT-59 J.DA59 T-A WC 20-XX cWW cW-W 15 I.DC-58 J.DG58 C-G WC 19-XIX cWW cW-W 16 I.DT-57 J.DA57 T-A WC 20-XX cWW cW-W 17 I.DG-56 J.DC56 G-C WC 19-XIX cWW cW-W 18 I.DA-55 J.DT55 A-T WC 20-XX cWW cW-W 19 I.DC-54 J.DG54 C-G WC 19-XIX cWW cW-W 20 I.DA-53 J.DT53 A-T WC 20-XX cWW cW-W 21 I.DC-52 J.DG52 C-G WC 19-XIX cWW cW-W 22 I.DG-51 J.DC51 G-C WC 19-XIX cWW cW-W 23 I.DT-50 J.DA50 T-A WC 20-XX cWW cW-W 24 I.DG-49 J.DC49 G-C WC 19-XIX cWW cW-W 25 I.DC-48 J.DG48 C-G WC 19-XIX cWW cW-W 26 I.DC-47 J.DG47 C-G WC 19-XIX cWW cW-W 27 I.DT-46 J.DA46 T-A WC 20-XX cWW cW-W 28 I.DG-45 J.DC45 G-C WC 19-XIX cWW cW-W 29 I.DG-44 J.DC44 G-C WC 19-XIX cWW cW-W 30 I.DA-43 J.DT43 A-T WC 20-XX cWW cW-W 31 I.DG-42 J.DC42 G-C WC 19-XIX cWW cW-W 32 I.DA-41 J.DT41 A-T WC 20-XX cWW cW-W 33 I.DC-40 J.DG40 C-G WC 19-XIX cWW cW-W 34 I.DT-39 J.DA39 T-A WC 20-XX cWW cW-W 35 I.DA-38 J.DT38 A-T WC 20-XX cWW cW-W 36 I.DG-37 J.DC37 G-C WC 19-XIX cWW cW-W 37 I.DG-36 J.DC36 G-C WC 19-XIX cWW cW-W 38 I.DG-35 J.DC35 G-C WC 19-XIX cWW cW-W 39 I.DA-34 J.DT34 A-T WC 20-XX cWW cW-W 40 I.DG-33 J.DC33 G-C WC 19-XIX cWW cW-W 41 I.DT-32 J.DA32 T-A WC 20-XX cWW cW-W 42 I.DA-31 J.DT31 A-T WC 20-XX cWW cW-W 43 I.DA-30 J.DT30 A-T WC 20-XX cWW cW-W 44 I.DT-29 J.DA29 T-A WC 20-XX cWW cW-W 45 I.DC-28 J.DG28 C-G WC 19-XIX cWW cW-W 46 I.DC-27 J.DG27 C-G WC 19-XIX cWW cW-W 47 I.DC-26 J.DG26 C-G WC 19-XIX cWW cW-W 48 I.DC-25 J.DG25 C-G WC 19-XIX cWW cW-W 49 I.DT-24 J.DA24 T-A WC 20-XX cWW cW-W 50 I.DT-23 J.DA23 T-A WC 20-XX cWW cW-W 51 I.DG-22 J.DC22 G-C WC 19-XIX cWW cW-W 52 I.DG-21 J.DC21 G-C WC 19-XIX cWW cW-W 53 I.DC-20 J.DG20 C-G WC 19-XIX cWW cW-W 54 I.DG-19 J.DC19 G-C WC 19-XIX cWW cW-W 55 I.DG-18 J.DC18 G-C WC 19-XIX cWW cW-W 56 I.DT-17 J.DA17 T-A WC 20-XX cWW cW-W 57 I.DT-16 J.DA16 T-A WC 20-XX cWW cW-W 58 I.DA-15 J.DT15 A-T WC 20-XX cWW cW-W 59 I.DA-14 J.DT14 A-T WC 20-XX cWW cW-W 60 I.DA-13 J.DT13 A-T WC 20-XX cWW cW-W 61 I.DA-12 J.DT12 A-T WC 20-XX cWW cW-W 62 I.DC-11 J.DG11 C-G WC 19-XIX cWW cW-W 63 I.DG-10 J.DC10 G-C WC 19-XIX cWW cW-W 64 I.DC-9 J.DG9 C-G WC 19-XIX cWW cW-W 65 I.DG-8 J.DC8 G-C WC 19-XIX cWW cW-W 66 I.DG-7 J.DC7 G-C WC 19-XIX cWW cW-W 67 I.DG-6 J.DC6 G-C WC 19-XIX cWW cW-W 68 I.DG-5 J.DC5 G-C WC 19-XIX cWW cW-W 69 I.DG-4 J.DC4 G-C WC 19-XIX cWW cW-W 70 I.DA-3 J.DT3 A-T WC 20-XX cWW cW-W 71 I.DC-2 J.DG2 C-G WC 19-XIX cWW cW-W 72 I.DA-1 J.DT1 A-T WC 20-XX cWW cW-W 73 I.DG0 J.DC0 G-C WC 19-XIX cWW cW-W 74 I.DC1 J.DG-1 C-G WC 19-XIX cWW cW-W 75 I.DG2 J.DC-2 G-C WC 19-XIX cWW cW-W 76 I.DC3 J.DG-3 C-G WC 19-XIX cWW cW-W 77 I.DG4 J.DC-4 G-C WC 19-XIX cWW cW-W 78 I.DT5 J.DA-5 T-A WC 20-XX cWW cW-W 79 I.DA6 J.DT-6 A-T WC 20-XX cWW cW-W 80 I.DC7 J.DG-7 C-G WC 19-XIX cWW cW-W 81 I.DG8 J.DC-8 G-C WC 19-XIX cWW cW-W 82 I.DT9 J.DA-9 T-A WC 20-XX cWW cW-W 83 I.DG10 J.DC-10 G-C WC 19-XIX cWW cW-W 84 I.DC11 J.DG-11 C-G WC 19-XIX cWW cW-W 85 I.DG12 J.DC-12 G-C WC 19-XIX cWW cW-W 86 I.DT13 J.DA-13 T-A WC 20-XX cWW cW-W 87 I.DT14 J.DA-14 T-A WC 20-XX cWW cW-W 88 I.DT15 J.DA-15 T-A WC 20-XX cWW cW-W 89 I.DA16 J.DT-16 A-T WC 20-XX cWW cW-W 90 I.DA17 J.DT-17 A-T WC 20-XX cWW cW-W 91 I.DG18 J.DC-18 G-C WC 19-XIX cWW cW-W 92 I.DC19 J.DG-19 C-G WC 19-XIX cWW cW-W 93 I.DG20 J.DC-20 G-C WC 19-XIX cWW cW-W 94 I.DG21 J.DC-21 G-C WC 19-XIX cWW cW-W 95 I.DT22 J.DA-22 T-A WC 20-XX cWW cW-W 96 I.DG23 J.DC-23 G-C WC 19-XIX cWW cW-W 97 I.DC24 J.DG-24 C-G WC 19-XIX cWW cW-W 98 I.DT25 J.DA-25 T-A WC 20-XX cWW cW-W 99 I.DA26 J.DT-26 A-T WC 20-XX cWW cW-W 100 I.DG27 J.DC-27 G-C WC 19-XIX cWW cW-W 101 I.DA28 J.DT-28 A-T WC 20-XX cWW cW-W 102 I.DG29 J.DC-29 G-C WC 19-XIX cWW cW-W 103 I.DC30 J.DG-30 C-G WC 19-XIX cWW cW-W 104 I.DT31 J.DA-31 T-A WC 20-XX cWW cW-W 105 I.DG32 J.DC-32 G-C WC 19-XIX cWW cW-W 106 I.DT33 J.DA-33 T-A WC 20-XX cWW cW-W 107 I.DC34 J.DG-34 C-G WC 19-XIX cWW cW-W 108 I.DT35 J.DA-35 T-A WC 20-XX cWW cW-W 109 I.DA36 J.DT-36 A-T WC 20-XX cWW cW-W 110 I.DC37 J.DG-37 C-G WC 19-XIX cWW cW-W 111 I.DG38 J.DC-38 G-C WC 19-XIX cWW cW-W 112 I.DA39 J.DT-39 A-T WC 20-XX cWW cW-W 113 I.DC40 J.DG-40 C-G WC 19-XIX cWW cW-W 114 I.DC41 J.DG-41 C-G WC 19-XIX cWW cW-W 115 I.DA42 J.DT-42 A-T WC 20-XX cWW cW-W 116 I.DA43 J.DT-43 A-T WC 20-XX cWW cW-W 117 I.DT44 J.DA-44 T-A WC 20-XX cWW cW-W 118 I.DT45 J.DA-45 T-A WC 20-XX cWW cW-W 119 I.DG46 J.DC-46 G-C WC 19-XIX cWW cW-W 120 I.DA47 J.DT-47 A-T WC 20-XX cWW cW-W 121 I.DG48 J.DC-48 G-C WC 19-XIX cWW cW-W 122 I.DC49 J.DG-49 C-G WC 19-XIX cWW cW-W 123 I.DG50 J.DC-50 G-C WC 19-XIX cWW cW-W 124 I.DG51 J.DC-51 G-C WC 19-XIX cWW cW-W 125 I.DC52 J.DG-52 C-G WC 19-XIX cWW cW-W 126 I.DC53 J.DG-53 C-G WC 19-XIX cWW cW-W 127 I.DT54 J.DA-54 T-A WC 20-XX cWW cW-W 128 I.DC55 J.DG-55 C-G WC 19-XIX cWW cW-W 129 I.DG56 J.DC-56 G-C WC 19-XIX cWW cW-W 130 I.DG57 J.DC-57 G-C WC 19-XIX cWW cW-W 131 I.DC58 J.DG-58 C-G WC 19-XIX cWW cW-W 132 I.DA59 J.DT-59 A-T WC 20-XX cWW cW-W 133 I.DC60 J.DG-60 C-G WC 19-XIX cWW cW-W 134 I.DC61 J.DG-61 C-G WC 19-XIX cWW cW-W 135 I.DG62 J.DC-62 G-C WC 19-XIX cWW cW-W 136 I.DG63 J.DC-63 G-C WC 19-XIX cWW cW-W 137 I.DG64 J.DC-64 G-C WC 19-XIX cWW cW-W 138 I.DA65 J.DT-65 A-T WC 20-XX cWW cW-W 139 I.DT66 J.DA-66 T-A WC 20-XX cWW cW-W 140 I.DT67 J.DA-67 T-A WC 20-XX cWW cW-W 141 I.DC68 J.DG-68 C-G WC 19-XIX cWW cW-W 142 I.DT69 J.DA-69 T-A WC 20-XX cWW cW-W 143 I.DC70 J.DG-70 C-G WC 19-XIX cWW cW-W 144 I.DC71 J.DG-71 C-G WC 19-XIX cWW cW-W **************************************************************************** List of 1 stem Note: A stem is defined as a helix consisting strictly of canonical WC/wobble pairs with a continuous backbone. stem#number[#helix-number containing this stem] Other terms are defined as in the above Helix section. -------------------------------------------------------------------- stem#1[#1] bps=144 strand-1 5'-CAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCC-3' bp-type |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| strand-2 3'-GTCCTACATATATAGACTGTGCACGGACCTCTGATCCCTCATTAGGGGAACCGCCAATTTTGCGCCCCCTGTCGCGCATGCACGCAAATTCGCCACGATCTCGACAGATGCTGGTTAACTCGCCGGAGCCGTGGCCCTAAGAGG-5' helix-form BBBBBB...BB...B..B......B..BBBBBBBBB.B.....BBB.BBBBBBB.B.BBBBBBBBBB...B.BB.BB.B.BBBBBBB.BBBB..BBB.BBBBBBBBB.BBBBBBBBBB..B..B.BB..BB.B.BBBBBBBBB 1 I.DC-72 J.DG72 C-G WC 19-XIX cWW cW-W 2 I.DA-71 J.DT71 A-T WC 20-XX cWW cW-W 3 I.DG-70 J.DC70 G-C WC 19-XIX cWW cW-W 4 I.DG-69 J.DC69 G-C WC 19-XIX cWW cW-W 5 I.DA-68 J.DT68 A-T WC 20-XX cWW cW-W 6 I.DT-67 J.DA67 T-A WC 20-XX cWW cW-W 7 I.DG-66 J.DC66 G-C WC 19-XIX cWW cW-W 8 I.DT-65 J.DA65 T-A WC 20-XX cWW cW-W 9 I.DA-64 J.DT64 A-T WC 20-XX cWW cW-W 10 I.DT-63 J.DA63 T-A WC 20-XX cWW cW-W 11 I.DA-62 J.DT62 A-T WC 20-XX cWW cW-W 12 I.DT-61 J.DA61 T-A WC 20-XX cWW cW-W 13 I.DA-60 J.DT60 A-T WC 20-XX cWW cW-W 14 I.DT-59 J.DA59 T-A WC 20-XX cWW cW-W 15 I.DC-58 J.DG58 C-G WC 19-XIX cWW cW-W 16 I.DT-57 J.DA57 T-A WC 20-XX cWW cW-W 17 I.DG-56 J.DC56 G-C WC 19-XIX cWW cW-W 18 I.DA-55 J.DT55 A-T WC 20-XX cWW cW-W 19 I.DC-54 J.DG54 C-G WC 19-XIX cWW cW-W 20 I.DA-53 J.DT53 A-T WC 20-XX cWW cW-W 21 I.DC-52 J.DG52 C-G WC 19-XIX cWW cW-W 22 I.DG-51 J.DC51 G-C WC 19-XIX cWW cW-W 23 I.DT-50 J.DA50 T-A WC 20-XX cWW cW-W 24 I.DG-49 J.DC49 G-C WC 19-XIX cWW cW-W 25 I.DC-48 J.DG48 C-G WC 19-XIX cWW cW-W 26 I.DC-47 J.DG47 C-G WC 19-XIX cWW cW-W 27 I.DT-46 J.DA46 T-A WC 20-XX cWW cW-W 28 I.DG-45 J.DC45 G-C WC 19-XIX cWW cW-W 29 I.DG-44 J.DC44 G-C WC 19-XIX cWW cW-W 30 I.DA-43 J.DT43 A-T WC 20-XX cWW cW-W 31 I.DG-42 J.DC42 G-C WC 19-XIX cWW cW-W 32 I.DA-41 J.DT41 A-T WC 20-XX cWW cW-W 33 I.DC-40 J.DG40 C-G WC 19-XIX cWW cW-W 34 I.DT-39 J.DA39 T-A WC 20-XX cWW cW-W 35 I.DA-38 J.DT38 A-T WC 20-XX cWW cW-W 36 I.DG-37 J.DC37 G-C WC 19-XIX cWW cW-W 37 I.DG-36 J.DC36 G-C WC 19-XIX cWW cW-W 38 I.DG-35 J.DC35 G-C WC 19-XIX cWW cW-W 39 I.DA-34 J.DT34 A-T WC 20-XX cWW cW-W 40 I.DG-33 J.DC33 G-C WC 19-XIX cWW cW-W 41 I.DT-32 J.DA32 T-A WC 20-XX cWW cW-W 42 I.DA-31 J.DT31 A-T WC 20-XX cWW cW-W 43 I.DA-30 J.DT30 A-T WC 20-XX cWW cW-W 44 I.DT-29 J.DA29 T-A WC 20-XX cWW cW-W 45 I.DC-28 J.DG28 C-G WC 19-XIX cWW cW-W 46 I.DC-27 J.DG27 C-G WC 19-XIX cWW cW-W 47 I.DC-26 J.DG26 C-G WC 19-XIX cWW cW-W 48 I.DC-25 J.DG25 C-G WC 19-XIX cWW cW-W 49 I.DT-24 J.DA24 T-A WC 20-XX cWW cW-W 50 I.DT-23 J.DA23 T-A WC 20-XX cWW cW-W 51 I.DG-22 J.DC22 G-C WC 19-XIX cWW cW-W 52 I.DG-21 J.DC21 G-C WC 19-XIX cWW cW-W 53 I.DC-20 J.DG20 C-G WC 19-XIX cWW cW-W 54 I.DG-19 J.DC19 G-C WC 19-XIX cWW cW-W 55 I.DG-18 J.DC18 G-C WC 19-XIX cWW cW-W 56 I.DT-17 J.DA17 T-A WC 20-XX cWW cW-W 57 I.DT-16 J.DA16 T-A WC 20-XX cWW cW-W 58 I.DA-15 J.DT15 A-T WC 20-XX cWW cW-W 59 I.DA-14 J.DT14 A-T WC 20-XX cWW cW-W 60 I.DA-13 J.DT13 A-T WC 20-XX cWW cW-W 61 I.DA-12 J.DT12 A-T WC 20-XX cWW cW-W 62 I.DC-11 J.DG11 C-G WC 19-XIX cWW cW-W 63 I.DG-10 J.DC10 G-C WC 19-XIX cWW cW-W 64 I.DC-9 J.DG9 C-G WC 19-XIX cWW cW-W 65 I.DG-8 J.DC8 G-C WC 19-XIX cWW cW-W 66 I.DG-7 J.DC7 G-C WC 19-XIX cWW cW-W 67 I.DG-6 J.DC6 G-C WC 19-XIX cWW cW-W 68 I.DG-5 J.DC5 G-C WC 19-XIX cWW cW-W 69 I.DG-4 J.DC4 G-C WC 19-XIX cWW cW-W 70 I.DA-3 J.DT3 A-T WC 20-XX cWW cW-W 71 I.DC-2 J.DG2 C-G WC 19-XIX cWW cW-W 72 I.DA-1 J.DT1 A-T WC 20-XX cWW cW-W 73 I.DG0 J.DC0 G-C WC 19-XIX cWW cW-W 74 I.DC1 J.DG-1 C-G WC 19-XIX cWW cW-W 75 I.DG2 J.DC-2 G-C WC 19-XIX cWW cW-W 76 I.DC3 J.DG-3 C-G WC 19-XIX cWW cW-W 77 I.DG4 J.DC-4 G-C WC 19-XIX cWW cW-W 78 I.DT5 J.DA-5 T-A WC 20-XX cWW cW-W 79 I.DA6 J.DT-6 A-T WC 20-XX cWW cW-W 80 I.DC7 J.DG-7 C-G WC 19-XIX cWW cW-W 81 I.DG8 J.DC-8 G-C WC 19-XIX cWW cW-W 82 I.DT9 J.DA-9 T-A WC 20-XX cWW cW-W 83 I.DG10 J.DC-10 G-C WC 19-XIX cWW cW-W 84 I.DC11 J.DG-11 C-G WC 19-XIX cWW cW-W 85 I.DG12 J.DC-12 G-C WC 19-XIX cWW cW-W 86 I.DT13 J.DA-13 T-A WC 20-XX cWW cW-W 87 I.DT14 J.DA-14 T-A WC 20-XX cWW cW-W 88 I.DT15 J.DA-15 T-A WC 20-XX cWW cW-W 89 I.DA16 J.DT-16 A-T WC 20-XX cWW cW-W 90 I.DA17 J.DT-17 A-T WC 20-XX cWW cW-W 91 I.DG18 J.DC-18 G-C WC 19-XIX cWW cW-W 92 I.DC19 J.DG-19 C-G WC 19-XIX cWW cW-W 93 I.DG20 J.DC-20 G-C WC 19-XIX cWW cW-W 94 I.DG21 J.DC-21 G-C WC 19-XIX cWW cW-W 95 I.DT22 J.DA-22 T-A WC 20-XX cWW cW-W 96 I.DG23 J.DC-23 G-C WC 19-XIX cWW cW-W 97 I.DC24 J.DG-24 C-G WC 19-XIX cWW cW-W 98 I.DT25 J.DA-25 T-A WC 20-XX cWW cW-W 99 I.DA26 J.DT-26 A-T WC 20-XX cWW cW-W 100 I.DG27 J.DC-27 G-C WC 19-XIX cWW cW-W 101 I.DA28 J.DT-28 A-T WC 20-XX cWW cW-W 102 I.DG29 J.DC-29 G-C WC 19-XIX cWW cW-W 103 I.DC30 J.DG-30 C-G WC 19-XIX cWW cW-W 104 I.DT31 J.DA-31 T-A WC 20-XX cWW cW-W 105 I.DG32 J.DC-32 G-C WC 19-XIX cWW cW-W 106 I.DT33 J.DA-33 T-A WC 20-XX cWW cW-W 107 I.DC34 J.DG-34 C-G WC 19-XIX cWW cW-W 108 I.DT35 J.DA-35 T-A WC 20-XX cWW cW-W 109 I.DA36 J.DT-36 A-T WC 20-XX cWW cW-W 110 I.DC37 J.DG-37 C-G WC 19-XIX cWW cW-W 111 I.DG38 J.DC-38 G-C WC 19-XIX cWW cW-W 112 I.DA39 J.DT-39 A-T WC 20-XX cWW cW-W 113 I.DC40 J.DG-40 C-G WC 19-XIX cWW cW-W 114 I.DC41 J.DG-41 C-G WC 19-XIX cWW cW-W 115 I.DA42 J.DT-42 A-T WC 20-XX cWW cW-W 116 I.DA43 J.DT-43 A-T WC 20-XX cWW cW-W 117 I.DT44 J.DA-44 T-A WC 20-XX cWW cW-W 118 I.DT45 J.DA-45 T-A WC 20-XX cWW cW-W 119 I.DG46 J.DC-46 G-C WC 19-XIX cWW cW-W 120 I.DA47 J.DT-47 A-T WC 20-XX cWW cW-W 121 I.DG48 J.DC-48 G-C WC 19-XIX cWW cW-W 122 I.DC49 J.DG-49 C-G WC 19-XIX cWW cW-W 123 I.DG50 J.DC-50 G-C WC 19-XIX cWW cW-W 124 I.DG51 J.DC-51 G-C WC 19-XIX cWW cW-W 125 I.DC52 J.DG-52 C-G WC 19-XIX cWW cW-W 126 I.DC53 J.DG-53 C-G WC 19-XIX cWW cW-W 127 I.DT54 J.DA-54 T-A WC 20-XX cWW cW-W 128 I.DC55 J.DG-55 C-G WC 19-XIX cWW cW-W 129 I.DG56 J.DC-56 G-C WC 19-XIX cWW cW-W 130 I.DG57 J.DC-57 G-C WC 19-XIX cWW cW-W 131 I.DC58 J.DG-58 C-G WC 19-XIX cWW cW-W 132 I.DA59 J.DT-59 A-T WC 20-XX cWW cW-W 133 I.DC60 J.DG-60 C-G WC 19-XIX cWW cW-W 134 I.DC61 J.DG-61 C-G WC 19-XIX cWW cW-W 135 I.DG62 J.DC-62 G-C WC 19-XIX cWW cW-W 136 I.DG63 J.DC-63 G-C WC 19-XIX cWW cW-W 137 I.DG64 J.DC-64 G-C WC 19-XIX cWW cW-W 138 I.DA65 J.DT-65 A-T WC 20-XX cWW cW-W 139 I.DT66 J.DA-66 T-A WC 20-XX cWW cW-W 140 I.DT67 J.DA-67 T-A WC 20-XX cWW cW-W 141 I.DC68 J.DG-68 C-G WC 19-XIX cWW cW-W 142 I.DT69 J.DA-69 T-A WC 20-XX cWW cW-W 143 I.DC70 J.DG-70 C-G WC 19-XIX cWW cW-W 144 I.DC71 J.DG-71 C-G WC 19-XIX cWW cW-W **************************************************************************** Secondary structures in dot-bracket notation (dbn) as a whole and per chain >8x7j nts=288 [whole] CAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCC&GGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTG ((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((&)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))) >8x7j-I #1 nts=144 0.27(2.31) [chain] DNA CAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCC (((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((( >8x7j-J #2 nts=144 0.29(2.31) [chain] DNA GGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTG )))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))) **************************************************************************** Summary of structural features of 288 nucleotides Note: the first five columns are: (1) serial number, (2) one-letter shorthand name, (3) dbn, (4) id string, (5) rmsd (~zero) of base ring atoms fitted against those in a standard base reference frame. The sixth (last) column contains a comma-separated list of features whose meanings are mostly self-explanatory, except for: turn: angle C1'(i-1)--C1'(i)--C1'(i+1) < 90 degrees break: no backbone linkage between O3'(i-1) and P(i) 1 C ( I.DC-72 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end 2 A ( I.DA-71 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 3 G ( I.DG-70 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 4 G ( I.DG-69 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 5 A ( I.DA-68 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 6 T ( I.DT-67 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 7 G ( I.DG-66 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 8 T ( I.DT-65 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 9 A ( I.DA-64 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 10 T ( I.DT-63 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 11 A ( I.DA-62 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 12 T ( I.DT-61 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 13 A ( I.DA-60 0.005 anti,BI,canonical,non-pair-contact,helix,stem 14 T ( I.DT-59 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 15 C ( I.DC-58 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 16 T ( I.DT-57 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 17 G ( I.DG-56 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 18 A ( I.DA-55 0.005 BI,canonical,non-pair-contact,helix,stem 19 C ( I.DC-54 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 20 A ( I.DA-53 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 21 C ( I.DC-52 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 22 G ( I.DG-51 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 23 T ( I.DT-50 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 24 G ( I.DG-49 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 25 C ( I.DC-48 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 26 C ( I.DC-47 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 27 T ( I.DT-46 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 28 G ( I.DG-45 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 29 G ( I.DG-44 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 30 A ( I.DA-43 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 31 G ( I.DG-42 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 32 A ( I.DA-41 0.004 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem 33 C ( I.DC-40 0.003 anti,BI,canonical,non-pair-contact,helix,stem 34 T ( I.DT-39 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 35 A ( I.DA-38 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 36 G ( I.DG-37 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 37 G ( I.DG-36 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 38 G ( I.DG-35 0.006 BI,canonical,non-pair-contact,helix,stem 39 A ( I.DA-34 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 40 G ( I.DG-33 0.008 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem 41 T ( I.DT-32 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 42 A ( I.DA-31 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 43 A ( I.DA-30 0.004 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem 44 T ( I.DT-29 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 45 C ( I.DC-28 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 46 C ( I.DC-27 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 47 C ( I.DC-26 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 48 C ( I.DC-25 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 49 T ( I.DT-24 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 50 T ( I.DT-23 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 51 G ( I.DG-22 0.003 anti,BI,canonical,non-pair-contact,helix,stem 52 G ( I.DG-21 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 53 C ( I.DC-20 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 54 G ( I.DG-19 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 55 G ( I.DG-18 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 56 T ( I.DT-17 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 57 T ( I.DT-16 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 58 A ( I.DA-15 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 59 A ( I.DA-14 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 60 A ( I.DA-13 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 61 A ( I.DA-12 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 62 C ( I.DC-11 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 63 G ( I.DG-10 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 64 C ( I.DC-9 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 65 G ( I.DG-8 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 66 G ( I.DG-7 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 67 G ( I.DG-6 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 68 G ( I.DG-5 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 69 G ( I.DG-4 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 70 A ( I.DA-3 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 71 C ( I.DC-2 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 72 A ( I.DA-1 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 73 G ( I.DG0 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 74 C ( I.DC1 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 75 G ( I.DG2 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 76 C ( I.DC3 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 77 G ( I.DG4 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 78 T ( I.DT5 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 79 A ( I.DA6 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 80 C ( I.DC7 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 81 G ( I.DG8 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 82 T ( I.DT9 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 83 G ( I.DG10 0.004 anti,BI,canonical,non-pair-contact,helix,stem 84 C ( I.DC11 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 85 G ( I.DG12 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 86 T ( I.DT13 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 87 T ( I.DT14 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 88 T ( I.DT15 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 89 A ( I.DA16 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 90 A ( I.DA17 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 91 G ( I.DG18 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 92 C ( I.DC19 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 93 G ( I.DG20 0.004 anti,canonical,non-canonical,non-pair-contact,helix,stem 94 G ( I.DG21 0.003 anti,BI,canonical,non-canonical,non-pair-contact,helix,stem 95 T ( I.DT22 0.002 anti,BI,canonical,non-pair-contact,helix,stem 96 G ( I.DG23 0.003 anti,BI,canonical,non-pair-contact,helix,stem 97 C ( I.DC24 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 98 T ( I.DT25 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 99 A ( I.DA26 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 100 G ( I.DG27 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 101 A ( I.DA28 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 102 G ( I.DG29 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 103 C ( I.DC30 0.003 anti,BI,canonical,non-pair-contact,helix,stem 104 T ( I.DT31 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 105 G ( I.DG32 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 106 T ( I.DT33 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 107 C ( I.DC34 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 108 T ( I.DT35 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 109 A ( I.DA36 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 110 C ( I.DC37 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 111 G ( I.DG38 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 112 A ( I.DA39 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 113 C ( I.DC40 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 114 C ( I.DC41 0.004 anti,BI,canonical,non-pair-contact,helix,stem 115 A ( I.DA42 0.004 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem 116 A ( I.DA43 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 117 T ( I.DT44 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 118 T ( I.DT45 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 119 G ( I.DG46 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 120 A ( I.DA47 0.004 BI,canonical,non-pair-contact,helix,stem 121 G ( I.DG48 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 122 C ( I.DC49 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 123 G ( I.DG50 0.006 anti,BI,canonical,non-pair-contact,helix,stem 124 G ( I.DG51 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 125 C ( I.DC52 0.003 anti,canonical,non-pair-contact,helix,stem 126 C ( I.DC53 0.003 anti,BI,canonical,non-pair-contact,helix,stem 127 T ( I.DT54 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 128 C ( I.DC55 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 129 G ( I.DG56 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 130 G ( I.DG57 0.005 BI,canonical,non-pair-contact,helix,stem 131 C ( I.DC58 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 132 A ( I.DA59 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 133 C ( I.DC60 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 134 C ( I.DC61 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 135 G ( I.DG62 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 136 G ( I.DG63 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 137 G ( I.DG64 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 138 A ( I.DA65 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 139 T ( I.DT66 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 140 T ( I.DT67 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 141 C ( I.DC68 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 142 T ( I.DT69 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 143 C ( I.DC70 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 144 C ( I.DC71 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,phosphate 145 G ) J.DG-71 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end 146 G ) J.DG-70 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 147 A ) J.DA-69 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 148 G ) J.DG-68 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 149 A ) J.DA-67 0.003 anti,BI,canonical,non-pair-contact,helix,stem 150 A ) J.DA-66 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 151 T ) J.DT-65 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 152 C ) J.DC-64 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 153 C ) J.DC-63 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 154 C ) J.DC-62 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 155 G ) J.DG-61 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 156 G ) J.DG-60 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 157 T ) J.DT-59 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 158 G ) J.DG-58 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 159 C ) J.DC-57 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 160 C ) J.DC-56 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 161 G ) J.DG-55 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 162 A ) J.DA-54 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 163 G ) J.DG-53 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 164 G ) J.DG-52 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 165 C ) J.DC-51 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 166 C ) J.DC-50 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 167 G ) J.DG-49 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 168 C ) J.DC-48 0.006 ~C2'-endo,BII,canonical,non-pair-contact,helix,stem 169 T ) J.DT-47 0.003 ~C2'-endo,BII,canonical,non-pair-contact,helix,stem 170 C ) J.DC-46 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 171 A ) J.DA-45 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 172 A ) J.DA-44 0.004 anti,BI,canonical,non-pair-contact,helix,stem,phosphate 173 T ) J.DT-43 0.002 anti,BI,canonical,non-canonical,non-pair-contact,helix,stem,phosphate 174 T ) J.DT-42 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 175 G ) J.DG-41 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 176 G ) J.DG-40 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 177 T ) J.DT-39 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 178 C ) J.DC-38 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 179 G ) J.DG-37 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 180 T ) J.DT-36 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 181 A ) J.DA-35 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 182 G ) J.DG-34 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 183 A ) J.DA-33 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 184 C ) J.DC-32 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 185 A ) J.DA-31 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 186 G ) J.DG-30 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 187 C ) J.DC-29 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 188 T ) J.DT-28 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 189 C ) J.DC-27 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 190 T ) J.DT-26 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 191 A ) J.DA-25 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 192 G ) J.DG-24 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 193 C ) J.DC-23 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 194 A ) J.DA-22 0.005 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem 195 C ) J.DC-21 0.003 anti,BI,canonical,non-canonical,non-pair-contact,helix,stem 196 C ) J.DC-20 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 197 G ) J.DG-19 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 198 C ) J.DC-18 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 199 T ) J.DT-17 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 200 T ) J.DT-16 0.002 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 201 A ) J.DA-15 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 202 A ) J.DA-14 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 203 A ) J.DA-13 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 204 C ) J.DC-12 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 205 G ) J.DG-11 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 206 C ) J.DC-10 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 207 A ) J.DA-9 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 208 C ) J.DC-8 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 209 G ) J.DG-7 0.003 ~C2'-endo,BII,canonical,non-pair-contact,helix,stem 210 T ) J.DT-6 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 211 A ) J.DA-5 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 212 C ) J.DC-4 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 213 G ) J.DG-3 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 214 C ) J.DC-2 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 215 G ) J.DG-1 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 216 C ) J.DC0 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 217 T ) J.DT1 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 218 G ) J.DG2 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 219 T ) J.DT3 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 220 C ) J.DC4 0.003 ~C2'-endo,BII,canonical,non-pair-contact,helix,stem 221 C ) J.DC5 0.004 ~C2'-endo,BII,canonical,non-pair-contact,helix,stem 222 C ) J.DC6 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 223 C ) J.DC7 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 224 C ) J.DC8 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 225 G ) J.DG9 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 226 C ) J.DC10 0.003 anti,BI,canonical,non-pair-contact,helix,stem 227 G ) J.DG11 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 228 T ) J.DT12 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 229 T ) J.DT13 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 230 T ) J.DT14 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 231 T ) J.DT15 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 232 A ) J.DA16 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 233 A ) J.DA17 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 234 C ) J.DC18 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 235 C ) J.DC19 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 236 G ) J.DG20 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 237 C ) J.DC21 0.003 anti,BI,canonical,non-pair-contact,helix,stem 238 C ) J.DC22 0.003 anti,BI,canonical,non-pair-contact,helix,stem 239 A ) J.DA23 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 240 A ) J.DA24 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 241 G ) J.DG25 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 242 G ) J.DG26 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 243 G ) J.DG27 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 244 G ) J.DG28 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 245 A ) J.DA29 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 246 T ) J.DT30 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 247 T ) J.DT31 0.004 anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem 248 A ) J.DA32 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 249 C ) J.DC33 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 250 T ) J.DT34 0.004 anti,~C2'-endo,BII,canonical,non-canonical,non-pair-contact,helix,stem 251 C ) J.DC35 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 252 C ) J.DC36 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 253 C ) J.DC37 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 254 T ) J.DT38 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,phosphate 255 A ) J.DA39 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 256 G ) J.DG40 0.005 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem 257 T ) J.DT41 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 258 C ) J.DC42 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 259 T ) J.DT43 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 260 C ) J.DC44 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 261 C ) J.DC45 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 262 A ) J.DA46 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 263 G ) J.DG47 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 264 G ) J.DG48 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 265 C ) J.DC49 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 266 A ) J.DA50 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 267 C ) J.DC51 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 268 G ) J.DG52 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 269 T ) J.DT53 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 270 G ) J.DG54 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 271 T ) J.DT55 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem 272 C ) J.DC56 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 273 A ) J.DA57 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 274 G ) J.DG58 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 275 A ) J.DA59 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 276 T ) J.DT60 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 277 A ) J.DA61 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 278 T ) J.DT62 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 279 A ) J.DA63 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 280 T ) J.DT64 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 281 A ) J.DA65 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 282 C ) J.DC66 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 283 A ) J.DA67 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 284 T ) J.DT68 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 285 C ) J.DC69 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem 286 C ) J.DC70 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,phosphate 287 T ) J.DT71 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 288 G ) J.DG72 0.003 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end **************************************************************************** List of 11 additional files 1 dssr-pairs.pdb -- an ensemble of base pairs 2 dssr-stems.pdb -- an ensemble of stems 3 dssr-helices.pdb -- an ensemble of helices (coaxial stacking) 4 dssr-2ndstrs.bpseq -- secondary structure in bpseq format 5 dssr-2ndstrs.ct -- secondary structure in connectivity table format 6 dssr-2ndstrs.dbn -- secondary structure in dot-bracket notation 7 dssr-torsions.txt -- backbone torsion angles and suite names 8 dssr-rotmat.txt -- position vector and rotation matrix 9 dssr-viewV.pdb -- vertical view of the principal moment of inertia 10 dssr-viewH.pdb -- horizontal view of the principal moment of inertia 11 dssr-viewT.pdb -- top view of the principal moment of inertia