{ "num_pairs": 1243, "pairs": [ { "index": 1, "nt1": "///A/3", "nt2": "///A/2924", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.399, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.074, "chi2": -151.346, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.091, "C1C1_dist": 10.341, "N1N9_dist": 8.692, "C6C8_dist": 9.698, "CNNC_torsion": -0.772, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.87],O4(carbonyl)-N6(amino)[2.99]", "interBase_angle": 11.368, "planarity": 0.284, "simple_Shear": -0.067, "simple_Stretch": -0.274, "simple_Buckle": -6.713, "simple_Propeller": -9.174, "bp_simpleParams": [ -0.067, -0.274, -0.985, -6.713, -9.174, 4.103 ], "bp_params": [ -0.065, -0.275, -0.985, -6.624, -9.239, 4.109 ], "frame": { "rmsd": null, "origin": [ 138.155, 100.125, 202.994 ], "x_axis": [ -0.938, 0.271, -0.215 ], "y_axis": [ -0.058, 0.489, 0.871 ], "z_axis": [ 0.341, 0.829, -0.443 ], "quaternion": [ 0.164, 0.063, 0.847, 0.502 ] } }, { "index": 2, "nt1": "///A/4", "nt2": "///A/2923", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.332, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.033, "chi2": -156.702, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.653, "C1C1_dist": 10.506, "N1N9_dist": 8.789, "C6C8_dist": 9.739, "CNNC_torsion": -2.612, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.84],O4(carbonyl)-N6(amino)[2.92]", "interBase_angle": 9.813, "planarity": 0.200, "simple_Shear": -0.119, "simple_Stretch": -0.190, "simple_Buckle": -7.646, "simple_Propeller": -6.151, "bp_simpleParams": [ -0.119, -0.190, -0.559, -7.646, -6.151, 0.706 ], "bp_params": [ -0.116, -0.192, -0.559, -7.555, -6.263, 0.706 ], "frame": { "rmsd": null, "origin": [ 140.282, 102.591, 200.761 ], "x_axis": [ -0.772, 0.515, 0.372 ], "y_axis": [ 0.498, 0.128, 0.858 ], "z_axis": [ 0.394, 0.847, -0.355 ], "quaternion": [ 0.008, 0.337, 0.751, 0.568 ] } }, { "index": 3, "nt1": "///A/5", "nt2": "///A/2922", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.169, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.954, "chi2": -161.250, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.182, "C1C1_dist": 10.370, "N1N9_dist": 8.767, "C6C8_dist": 9.788, "CNNC_torsion": -0.687, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.01],N1-N3(imino)[2.80]", "interBase_angle": 9.454, "planarity": 0.127, "simple_Shear": -0.029, "simple_Stretch": -0.121, "simple_Buckle": -8.998, "simple_Propeller": 2.902, "bp_simpleParams": [ -0.029, -0.121, 0.065, -8.998, 2.902, 3.233 ], "bp_params": [ -0.029, -0.121, 0.065, -8.995, 2.910, 3.224 ], "frame": { "rmsd": null, "origin": [ 140.471, 105.670, 198.750 ], "x_axis": [ -0.430, 0.426, 0.796 ], "y_axis": [ 0.811, -0.205, 0.548 ], "z_axis": [ 0.397, 0.881, -0.257 ], "quaternion": [ -0.164, 0.508, 0.609, 0.587 ] } }, { "index": 4, "nt1": "///A/6", "nt2": "///A/2921", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.942, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.516, "chi2": -178.546, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.092, "C1C1_dist": 10.719, "N1N9_dist": 8.914, "C6C8_dist": 9.823, "CNNC_torsion": -3.838, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.94],N1-N3(imino)[2.88]", "interBase_angle": 5.601, "planarity": 0.139, "simple_Shear": 0.140, "simple_Stretch": -0.115, "simple_Buckle": -4.365, "simple_Propeller": 3.509, "bp_simpleParams": [ 0.140, -0.115, 0.460, -4.365, 3.509, -0.693 ], "bp_params": [ 0.138, -0.118, 0.460, -4.301, 3.587, -0.693 ], "frame": { "rmsd": null, "origin": [ 140.575, 108.833, 197.590 ], "x_axis": [ 0.036, 0.167, 0.985 ], "y_axis": [ 0.908, -0.418, 0.038 ], "z_axis": [ 0.418, 0.893, -0.167 ], "quaternion": [ -0.336, 0.636, 0.422, 0.551 ] } }, { "index": 5, "nt1": "///A/7", "nt2": "///A/2920", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.867, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.991, "chi2": -166.631, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.556, "C1C1_dist": 10.569, "N1N9_dist": 8.890, "C6C8_dist": 9.851, "CNNC_torsion": -2.718, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 3.642, "planarity": 0.132, "simple_Shear": -0.170, "simple_Stretch": -0.183, "simple_Buckle": 1.190, "simple_Propeller": 3.442, "bp_simpleParams": [ -0.170, -0.183, 0.580, 1.190, 3.442, 1.176 ], "bp_params": [ -0.167, -0.185, 0.580, 1.146, 3.457, 1.176 ], "frame": { "rmsd": null, "origin": [ 140.375, 112.386, 198.356 ], "x_axis": [ 0.438, -0.092, 0.894 ], "y_axis": [ 0.794, -0.427, -0.433 ], "z_axis": [ 0.422, 0.899, -0.114 ], "quaternion": [ -0.473, 0.703, 0.249, 0.468 ] } }, { "index": 6, "nt1": "///A/8", "nt2": "///A/2919", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.798, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.711, "chi2": -179.970, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.040, "C1C1_dist": 10.861, "N1N9_dist": 8.960, "C6C8_dist": 9.766, "CNNC_torsion": -6.393, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.91],O4(carbonyl)-N6(amino)[2.85]", "interBase_angle": 1.635, "planarity": 0.146, "simple_Shear": -0.104, "simple_Stretch": -0.175, "simple_Buckle": -0.430, "simple_Propeller": 1.577, "bp_simpleParams": [ -0.104, -0.175, 0.698, -0.430, 1.577, -5.410 ], "bp_params": [ -0.101, -0.177, 0.698, -0.454, 1.571, -5.410 ], "frame": { "rmsd": null, "origin": [ 140.514, 116.047, 199.174 ], "x_axis": [ 0.820, -0.330, 0.468 ], "y_axis": [ 0.384, -0.289, -0.877 ], "z_axis": [ 0.425, 0.898, -0.111 ], "quaternion": [ 0.596, -0.745, -0.018, -0.300 ] } }, { "index": 7, "nt1": "///A/9", "nt2": "///A/2658", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -171.151, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 37.628, "chi2": -105.594, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 14.901, "C1C1_dist": 9.746, "N1N9_dist": 7.270, "C6C8_dist": 6.505, "CNNC_torsion": -169.762, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.70],N3(imino)-N7[3.09]", "interBase_angle": 4.505, "planarity": 0.211, "simple_Shear": 4.827, "simple_Stretch": 1.016, "simple_Buckle": 3.040, "simple_Propeller": -3.325, "bp_simpleParams": [ 4.827, 1.016, 0.909, 3.040, -3.325, -86.779 ], "bp_params": [ 4.246, -2.510, 0.909, -0.004, -4.505, -86.824 ], "frame": { "rmsd": null, "origin": [ 140.521, 119.967, 201.351 ], "x_axis": [ 0.506, -0.415, -0.757 ], "y_axis": [ -0.712, 0.295, -0.637 ], "z_axis": [ 0.487, 0.861, -0.146 ], "quaternion": [ 0.643, -0.582, 0.484, 0.116 ] } }, { "index": 8, "nt1": "///A/13", "nt2": "///A/14", "bp": "A+A", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -107.130, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 142.499, "chi2": -156.077, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 38.164, "C1C1_dist": 6.899, "N1N9_dist": 6.923, "C6C8_dist": 6.963, "CNNC_torsion": 33.542, "hbonds_num": 1, "hbonds_desc": "N3-N6(amino)[3.55]", "interBase_angle": 30.341, "planarity": 0.330, "simple_Shear": -0.004, "simple_Stretch": 7.094, "simple_Buckle": -29.769, "simple_Propeller": -5.860, "bp_simpleParams": [ -0.004, 7.094, -0.406, -29.769, -5.860, 2.206 ], "bp_params": [ 7.094, 0.022, -0.406, -5.812, 29.779, 2.280 ], "frame": { "rmsd": null, "origin": [ 149.042, 137.647, 201.635 ], "x_axis": [ -0.775, -0.330, -0.538 ], "y_axis": [ -0.577, 0.025, 0.816 ], "z_axis": [ -0.256, 0.944, -0.210 ], "quaternion": [ 0.100, -0.320, 0.709, 0.620 ] } }, { "index": 9, "nt1": "///A/15", "nt2": "///A/571", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.353, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 42.248, "chi2": -176.643, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.152, "C1C1_dist": 10.814, "N1N9_dist": 8.841, "C6C8_dist": 9.518, "CNNC_torsion": 9.671, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.91],N1(imino)-O2(carbonyl)[3.14],N2(amino)-O2(carbonyl)[3.27]", "interBase_angle": 11.532, "planarity": 0.165, "simple_Shear": -1.092, "simple_Stretch": -0.352, "simple_Buckle": -11.148, "simple_Propeller": 2.953, "bp_simpleParams": [ -1.092, -0.352, -0.800, -11.148, 2.953, -11.227 ], "bp_params": [ -1.048, -0.467, -0.800, -11.402, 1.729, -11.173 ], "frame": { "rmsd": null, "origin": [ 145.633, 140.472, 201.635 ], "x_axis": [ -0.858, -0.314, 0.408 ], "y_axis": [ 0.230, 0.475, 0.849 ], "z_axis": [ -0.460, 0.822, -0.335 ], "quaternion": [ -0.266, -0.025, 0.817, 0.512 ] } }, { "index": 10, "nt1": "///A/16", "nt2": "///A/570", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.888, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.960, "chi2": -171.927, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.909, "C1C1_dist": 10.784, "N1N9_dist": 8.926, "C6C8_dist": 9.781, "CNNC_torsion": 11.232, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.87],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.82]", "interBase_angle": 9.458, "planarity": 0.178, "simple_Shear": -0.090, "simple_Stretch": -0.243, "simple_Buckle": -7.896, "simple_Propeller": 5.206, "bp_simpleParams": [ -0.090, -0.243, -0.885, -7.896, 5.206, -3.108 ], "bp_params": [ -0.088, -0.243, -0.885, -7.930, 5.155, -3.104 ], "frame": { "rmsd": null, "origin": [ 142.797, 142.286, 199.413 ], "x_axis": [ -0.587, -0.069, 0.806 ], "y_axis": [ 0.660, 0.536, 0.526 ], "z_axis": [ -0.469, 0.841, -0.270 ], "quaternion": [ -0.412, 0.191, 0.774, 0.442 ] } }, { "index": 11, "nt1": "///A/17", "nt2": "///A/569", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.674, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.629, "chi2": -160.738, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.386, "C1C1_dist": 10.737, "N1N9_dist": 8.925, "C6C8_dist": 9.818, "CNNC_torsion": 8.850, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 8.504, "planarity": 0.131, "simple_Shear": -0.175, "simple_Stretch": -0.190, "simple_Buckle": -4.545, "simple_Propeller": 7.188, "bp_simpleParams": [ -0.175, -0.190, -0.513, -4.545, 7.188, -1.508 ], "bp_params": [ -0.173, -0.193, -0.513, -4.645, 7.124, -1.509 ], "frame": { "rmsd": null, "origin": [ 139.808, 144.404, 197.593 ], "x_axis": [ -0.136, 0.196, 0.971 ], "y_axis": [ 0.888, 0.460, 0.032 ], "z_axis": [ -0.440, 0.866, -0.236 ], "quaternion": [ 0.521, -0.400, -0.677, -0.332 ] } }, { "index": 12, "nt1": "///A/18", "nt2": "///A/568", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.684, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.900, "chi2": -170.928, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 47.980, "C1C1_dist": 10.770, "N1N9_dist": 8.941, "C6C8_dist": 9.832, "CNNC_torsion": 7.521, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 9.610, "planarity": 0.133, "simple_Shear": 0.256, "simple_Stretch": -0.161, "simple_Buckle": 3.785, "simple_Propeller": 8.833, "bp_simpleParams": [ 0.256, -0.161, -0.061, 3.785, 8.833, -0.855 ], "bp_params": [ 0.252, -0.166, -0.061, 3.967, 8.753, -0.857 ], "frame": { "rmsd": null, "origin": [ 137.132, 146.811, 197.845 ], "x_axis": [ 0.385, 0.327, 0.863 ], "y_axis": [ 0.824, 0.300, -0.481 ], "z_axis": [ -0.416, 0.896, -0.153 ], "quaternion": [ 0.619, -0.556, -0.517, -0.201 ] } }, { "index": 13, "nt1": "///A/19", "nt2": "///A/567", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.466, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 42.116, "chi2": -159.648, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 68.005, "C1C1_dist": 10.567, "N1N9_dist": 8.934, "C6C8_dist": 9.875, "CNNC_torsion": -9.438, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[3.06],N1(imino)-O2(carbonyl)[2.93]", "interBase_angle": 15.772, "planarity": 0.173, "simple_Shear": -2.415, "simple_Stretch": 0.204, "simple_Buckle": -13.035, "simple_Propeller": -8.881, "bp_simpleParams": [ -2.415, 0.204, -0.377, -13.035, -8.881, 2.004 ], "bp_params": [ -2.396, -0.364, -0.377, -10.619, -11.662, 2.005 ], "frame": { "rmsd": null, "origin": [ 136.901, 149.573, 199.946 ], "x_axis": [ 0.922, -0.043, 0.385 ], "y_axis": [ 0.379, 0.297, -0.876 ], "z_axis": [ -0.077, 0.954, 0.291 ], "quaternion": [ 0.792, -0.577, -0.146, -0.133 ] } }, { "index": 14, "nt1": "///A/20", "nt2": "///A/566", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.967, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.535, "chi2": -160.603, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.652, "C1C1_dist": 10.646, "N1N9_dist": 8.856, "C6C8_dist": 9.763, "CNNC_torsion": 3.176, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.88]", "interBase_angle": 5.565, "planarity": 0.230, "simple_Shear": 0.168, "simple_Stretch": -0.279, "simple_Buckle": -4.406, "simple_Propeller": -3.399, "bp_simpleParams": [ 0.168, -0.279, -0.796, -4.406, -3.399, -0.647 ], "bp_params": [ 0.165, -0.282, -0.796, -4.448, -3.344, -0.647 ], "frame": { "rmsd": null, "origin": [ 135.703, 152.668, 201.729 ], "x_axis": [ 0.963, 0.114, -0.246 ], "y_axis": [ -0.264, 0.194, -0.945 ], "z_axis": [ -0.060, 0.974, 0.217 ], "quaternion": [ 0.770, -0.623, 0.060, 0.123 ] } }, { "index": 15, "nt1": "///A/21", "nt2": "///A/565", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.480, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.732, "chi2": -160.260, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.102, "C1C1_dist": 10.519, "N1N9_dist": 8.826, "C6C8_dist": 9.799, "CNNC_torsion": 2.333, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.95],N1-N3(imino)[2.81]", "interBase_angle": 5.151, "planarity": 0.062, "simple_Shear": 0.070, "simple_Stretch": -0.132, "simple_Buckle": -4.567, "simple_Propeller": 2.382, "bp_simpleParams": [ 0.070, -0.132, -0.225, -4.567, 2.382, 0.971 ], "bp_params": [ 0.068, -0.132, -0.225, -4.540, 2.434, 0.970 ], "frame": { "rmsd": null, "origin": [ 136.453, 155.863, 203.666 ], "x_axis": [ 0.711, 0.118, -0.694 ], "y_axis": [ -0.703, 0.083, -0.706 ], "z_axis": [ -0.026, 0.990, 0.142 ], "quaternion": [ 0.696, -0.610, 0.240, 0.295 ] } }, { "index": 16, "nt1": "///A/22", "nt2": "///A/564", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.581, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.298, "chi2": 177.580, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.638, "C1C1_dist": 10.780, "N1N9_dist": 9.001, "C6C8_dist": 9.924, "CNNC_torsion": -4.742, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.84],N3-N1(imino)[2.96],N4(amino)-O6(carbonyl)[2.99]", "interBase_angle": 2.810, "planarity": 0.122, "simple_Shear": 0.184, "simple_Stretch": -0.103, "simple_Buckle": 1.142, "simple_Propeller": 2.568, "bp_simpleParams": [ 0.184, -0.103, 0.455, 1.142, 2.568, 0.533 ], "bp_params": [ 0.182, -0.106, 0.455, 1.176, 2.552, 0.533 ], "frame": { "rmsd": null, "origin": [ 138.015, 159.113, 203.959 ], "x_axis": [ 0.181, 0.088, -0.980 ], "y_axis": [ -0.983, 0.005, -0.181 ], "z_axis": [ -0.011, 0.996, 0.087 ], "quaternion": [ 0.564, -0.522, 0.429, 0.475 ] } }, { "index": 17, "nt1": "///A/23", "nt2": "///A/563", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.420, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.595, "chi2": -152.053, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.187, "C1C1_dist": 10.674, "N1N9_dist": 8.938, "C6C8_dist": 9.878, "CNNC_torsion": -4.272, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 8.407, "planarity": 0.091, "simple_Shear": -0.211, "simple_Stretch": -0.128, "simple_Buckle": -6.521, "simple_Propeller": -5.306, "bp_simpleParams": [ -0.211, -0.128, -0.139, -6.521, -5.306, 0.289 ], "bp_params": [ -0.209, -0.131, -0.139, -6.442, -5.402, 0.289 ], "frame": { "rmsd": null, "origin": [ 140.800, 162.171, 203.685 ], "x_axis": [ -0.181, -0.256, -0.950 ], "y_axis": [ -0.981, 0.111, 0.157 ], "z_axis": [ 0.065, 0.960, -0.271 ], "quaternion": [ 0.406, -0.495, 0.625, 0.447 ] } }, { "index": 18, "nt1": "///A/24", "nt2": "///A/562", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.708, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.075, "chi2": -159.727, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.275, "C1C1_dist": 10.597, "N1N9_dist": 8.891, "C6C8_dist": 9.856, "CNNC_torsion": 2.137, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.97],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.72]", "interBase_angle": 8.508, "planarity": 0.115, "simple_Shear": -0.184, "simple_Stretch": -0.146, "simple_Buckle": -8.508, "simple_Propeller": -0.061, "bp_simpleParams": [ -0.184, -0.146, -0.586, -8.508, -0.061, 1.977 ], "bp_params": [ -0.182, -0.148, -0.586, -8.506, -0.178, 1.972 ], "frame": { "rmsd": null, "origin": [ 142.726, 165.411, 202.509 ], "x_axis": [ -0.688, -0.214, -0.693 ], "y_axis": [ -0.725, 0.183, 0.664 ], "z_axis": [ -0.015, 0.959, -0.282 ], "quaternion": [ 0.231, -0.320, 0.734, 0.553 ] } }, { "index": 19, "nt1": "///A/25", "nt2": "///A/561", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -177.485, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.089, "chi2": 179.096, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 19.908, "C1C1_dist": 11.659, "N1N9_dist": 9.519, "C6C8_dist": 9.662, "CNNC_torsion": 58.615, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.31]", "interBase_angle": 15.321, "planarity": 0.365, "simple_Shear": 4.320, "simple_Stretch": 1.166, "simple_Buckle": -14.976, "simple_Propeller": 3.229, "bp_simpleParams": [ 4.320, 1.166, -1.344, -14.976, 3.229, -34.784 ], "bp_params": [ 4.377, -0.930, -1.344, -11.872, 9.684, -34.726 ], "frame": { "rmsd": null, "origin": [ 145.289, 169.026, 200.618 ], "x_axis": [ -0.990, -0.078, 0.113 ], "y_axis": [ 0.077, 0.371, 0.926 ], "z_axis": [ -0.115, 0.925, -0.361 ], "quaternion": [ -0.069, -0.001, 0.825, 0.561 ] } }, { "index": 20, "nt1": "///A/26", "nt2": "///A/560", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -121.789, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 95.240, "chi2": -178.121, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 9.929, "C1C1_dist": 9.582, "N1N9_dist": 8.364, "C6C8_dist": 8.836, "CNNC_torsion": 97.203, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.88],N3-N6(amino)[2.94]", "interBase_angle": 17.528, "planarity": 0.240, "simple_Shear": 7.350, "simple_Stretch": 2.299, "simple_Buckle": -5.157, "simple_Propeller": 16.752, "bp_simpleParams": [ 7.350, 2.299, -0.990, -5.157, 16.752, -4.412 ], "bp_params": [ 6.561, -4.032, -0.990, 9.272, 14.875, -4.435 ], "frame": { "rmsd": null, "origin": [ 142.783, 171.615, 199.743 ], "x_axis": [ -0.566, 0.236, 0.790 ], "y_axis": [ 0.784, 0.448, 0.429 ], "z_axis": [ -0.253, 0.862, -0.439 ], "quaternion": [ -0.333, 0.326, 0.783, 0.412 ] } }, { "index": 21, "nt1": "///A/27", "nt2": "///A/559", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -104.024, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 96.940, "chi2": 172.570, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 11.645, "C1C1_dist": 9.299, "N1N9_dist": 8.187, "C6C8_dist": 8.374, "CNNC_torsion": -137.284, "hbonds_num": 2, "hbonds_desc": "N2(amino)-OP2[3.36],N2(amino)-N7[3.39]", "interBase_angle": 39.785, "planarity": 0.549, "simple_Shear": 7.977, "simple_Stretch": 3.760, "simple_Buckle": 4.869, "simple_Propeller": 39.486, "bp_simpleParams": [ 7.977, 3.760, -0.290, 4.869, 39.486, -17.577 ], "bp_params": [ 7.126, -5.195, -0.290, 36.911, 14.845, -16.840 ], "frame": { "rmsd": null, "origin": [ 141.223, 174.547, 199.253 ], "x_axis": [ -0.082, 0.422, 0.903 ], "y_axis": [ 0.867, 0.478, -0.145 ], "z_axis": [ -0.492, 0.771, -0.405 ], "quaternion": [ -0.498, 0.460, 0.701, 0.223 ] } }, { "index": 22, "nt1": "///A/28", "nt2": "///A/558", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -177.214, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 12.893, "chi2": -171.111, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 115.476, "C1C1_dist": 9.117, "N1N9_dist": 8.397, "C6C8_dist": 9.015, "CNNC_torsion": -83.288, "hbonds_num": 1, "hbonds_desc": "N7-N2(amino)[3.95]", "interBase_angle": 12.116, "planarity": 0.239, "simple_Shear": -7.861, "simple_Stretch": 3.191, "simple_Buckle": -11.947, "simple_Propeller": 2.017, "bp_simpleParams": [ -7.861, 3.191, 1.049, -11.947, 2.017, 12.811 ], "bp_params": [ -7.243, -4.418, 1.049, -8.726, -8.406, 12.809 ], "frame": { "rmsd": null, "origin": [ 137.479, 178.028, 199.112 ], "x_axis": [ -0.302, 0.300, 0.905 ], "y_axis": [ 0.856, 0.503, 0.119 ], "z_axis": [ -0.419, 0.811, -0.408 ], "quaternion": [ -0.445, 0.389, 0.744, 0.313 ] } }, { "index": 23, "nt1": "///A/29", "nt2": "///A/557", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.705, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 44.462, "chi2": -161.614, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 71.536, "C1C1_dist": 9.017, "N1N9_dist": 7.509, "C6C8_dist": 8.710, "CNNC_torsion": -11.142, "hbonds_num": 2, "hbonds_desc": "N3(imino)-O2(carbonyl)[3.17],O4(carbonyl)-N3(imino)[2.93]", "interBase_angle": 7.324, "planarity": 0.118, "simple_Shear": -2.637, "simple_Stretch": -1.016, "simple_Buckle": -2.939, "simple_Propeller": -6.708, "bp_simpleParams": [ -2.637, -1.016, 0.276, -2.939, -6.708, 6.761 ], "bp_params": [ -2.279, -1.670, 0.276, -1.078, -7.244, 6.774 ], "frame": { "rmsd": null, "origin": [ 135.750, 180.487, 197.146 ], "x_axis": [ 0.516, 0.525, 0.676 ], "y_axis": [ 0.755, 0.094, -0.649 ], "z_axis": [ -0.404, 0.846, -0.348 ], "quaternion": [ 0.562, -0.665, -0.481, -0.102 ] } }, { "index": 24, "nt1": "///A/30", "nt2": "///A/556", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.572, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.150, "chi2": -176.297, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.684, "C1C1_dist": 10.655, "N1N9_dist": 8.879, "C6C8_dist": 9.844, "CNNC_torsion": 7.908, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.97],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 16.564, "planarity": 0.247, "simple_Shear": -0.228, "simple_Stretch": -0.148, "simple_Buckle": -5.060, "simple_Propeller": 15.772, "bp_simpleParams": [ -0.228, -0.148, 0.233, -5.060, 15.772, 3.117 ], "bp_params": [ -0.225, -0.153, 0.233, -5.366, 15.671, 3.143 ], "frame": { "rmsd": null, "origin": [ 133.949, 183.567, 197.195 ], "x_axis": [ 0.962, 0.245, 0.118 ], "y_axis": [ 0.181, -0.253, -0.951 ], "z_axis": [ -0.203, 0.936, -0.288 ], "quaternion": [ 0.596, -0.791, -0.135, 0.027 ] } }, { "index": 25, "nt1": "///A/31", "nt2": "///A/521", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.025, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.845, "chi2": -127.537, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 50.228, "C1C1_dist": 10.929, "N1N9_dist": 9.020, "C6C8_dist": 9.883, "CNNC_torsion": 6.244, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.85],N3-N1(imino)[2.93],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 10.826, "planarity": 0.127, "simple_Shear": 0.157, "simple_Stretch": -0.114, "simple_Buckle": -5.267, "simple_Propeller": 9.459, "bp_simpleParams": [ 0.157, -0.114, -0.047, -5.267, 9.459, -1.887 ], "bp_params": [ 0.156, -0.115, -0.047, -5.176, 9.509, -1.892 ], "frame": { "rmsd": null, "origin": [ 134.534, 187.400, 197.328 ], "x_axis": [ 0.880, -0.240, -0.409 ], "y_axis": [ -0.464, -0.252, -0.849 ], "z_axis": [ 0.101, 0.938, -0.333 ], "quaternion": [ 0.569, -0.785, 0.224, 0.098 ] } }, { "index": 26, "nt1": "///A/32", "nt2": "///A/520", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.527, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.789, "chi2": 166.016, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 47.687, "C1C1_dist": 10.847, "N1N9_dist": 8.962, "C6C8_dist": 9.839, "CNNC_torsion": 0.178, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.85],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 11.514, "planarity": 0.176, "simple_Shear": 0.245, "simple_Stretch": -0.173, "simple_Buckle": -0.821, "simple_Propeller": 11.484, "bp_simpleParams": [ 0.245, -0.173, 0.438, -0.821, 11.484, -0.303 ], "bp_params": [ 0.242, -0.178, 0.438, -0.605, 11.498, -0.305 ], "frame": { "rmsd": null, "origin": [ 137.035, 190.453, 197.289 ], "x_axis": [ 0.443, -0.473, -0.761 ], "y_axis": [ -0.883, -0.087, -0.460 ], "z_axis": [ 0.151, 0.877, -0.457 ], "quaternion": [ -0.474, 0.705, -0.481, -0.216 ] } }, { "index": 27, "nt1": "///A/33", "nt2": "///A/494", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -128.177, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 32.614, "chi2": -128.891, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 15.491, "C1C1_dist": 10.084, "N1N9_dist": 7.527, "C6C8_dist": 6.610, "CNNC_torsion": -160.286, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.79],N3(imino)-N7[3.08]", "interBase_angle": 7.112, "planarity": 0.142, "simple_Shear": 4.185, "simple_Stretch": 1.064, "simple_Buckle": 4.128, "simple_Propeller": 5.791, "bp_simpleParams": [ 4.185, 1.064, 0.538, 4.128, 5.791, -91.399 ], "bp_params": [ 3.957, -1.729, 0.538, 6.814, 2.038, -91.307 ], "frame": { "rmsd": null, "origin": [ 140.081, 193.919, 197.780 ], "x_axis": [ -0.739, -0.257, -0.623 ], "y_axis": [ -0.610, 0.648, 0.455 ], "z_axis": [ 0.287, 0.717, -0.636 ], "quaternion": [ 0.262, -0.249, 0.869, 0.337 ] } }, { "index": 28, "nt1": "///A/35", "nt2": "///A/492", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.447, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.123, "chi2": -170.686, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.346, "C1C1_dist": 10.611, "N1N9_dist": 8.846, "C6C8_dist": 9.758, "CNNC_torsion": 2.806, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.94],N2(amino)-O2(carbonyl)[2.86]", "interBase_angle": 23.433, "planarity": 0.286, "simple_Shear": -0.296, "simple_Stretch": -0.223, "simple_Buckle": 14.166, "simple_Propeller": 18.666, "bp_simpleParams": [ -0.296, -0.223, 1.003, 14.166, 18.666, 3.457 ], "bp_params": [ -0.293, -0.227, 1.003, 13.868, 18.888, 3.479 ], "frame": { "rmsd": null, "origin": [ 138.837, 199.334, 190.771 ], "x_axis": [ -0.742, 0.588, -0.321 ], "y_axis": [ -0.138, 0.335, 0.932 ], "z_axis": [ 0.656, 0.736, -0.167 ], "quaternion": [ 0.326, 0.150, 0.749, 0.557 ] } }, { "index": 29, "nt1": "///A/35", "nt2": "///A/496", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "t.W", "DSSR": "t.+W", "intra_chain": true, "chi1": -179.447, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 80.512, "chi2": -179.845, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 35.550, "C1C1_dist": 12.465, "N1N9_dist": 11.256, "C6C8_dist": 12.762, "CNNC_torsion": -161.403, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N1[3.67]", "interBase_angle": 15.352, "planarity": 0.342, "simple_Shear": 3.906, "simple_Stretch": 4.583, "simple_Buckle": -9.692, "simple_Propeller": 11.906, "bp_simpleParams": [ 3.906, 4.583, 1.382, -9.692, 11.906, -131.164 ], "bp_params": [ 2.418, -5.515, 1.382, 14.945, 3.511, -130.816 ], "frame": { "rmsd": null, "origin": [ 141.147, 197.372, 191.737 ], "x_axis": [ -0.369, 0.596, 0.713 ], "y_axis": [ 0.672, -0.359, 0.648 ], "z_axis": [ 0.642, 0.718, -0.268 ], "quaternion": [ -0.032, 0.561, 0.565, 0.604 ] } }, { "index": 30, "nt1": "///A/35", "nt2": "///A/497", "bp": "G+G", "name": "--", "Saenger": "04-IV", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -179.447, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 75.365, "chi2": -160.283, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 84.564, "C1C1_dist": 8.632, "N1N9_dist": 8.602, "C6C8_dist": 11.054, "CNNC_torsion": -158.951, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N2(amino)[3.17],N2(amino)-N3[3.64]", "interBase_angle": 19.145, "planarity": 0.375, "simple_Shear": 7.730, "simple_Stretch": 4.866, "simple_Buckle": -9.685, "simple_Propeller": 16.515, "bp_simpleParams": [ 7.730, 4.866, -1.527, -9.685, 16.515, 168.926 ], "bp_params": [ 3.160, 8.570, -1.527, -17.732, 7.219, 168.815 ], "frame": { "rmsd": null, "origin": [ 143.014, 197.925, 192.830 ], "x_axis": [ -0.004, -0.317, -0.948 ], "y_axis": [ -0.749, 0.629, -0.207 ], "z_axis": [ 0.662, 0.710, -0.240 ], "quaternion": [ 0.588, -0.389, 0.684, 0.184 ] } }, { "index": 31, "nt1": "///A/36", "nt2": "///A/491", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 173.093, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.569, "chi2": -164.158, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.494, "C1C1_dist": 10.770, "N1N9_dist": 8.993, "C6C8_dist": 9.911, "CNNC_torsion": -0.203, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.98],N1(imino)-N3[2.95],N2(amino)-O2(carbonyl)[2.82]", "interBase_angle": 7.119, "planarity": 0.127, "simple_Shear": -0.200, "simple_Stretch": -0.116, "simple_Buckle": -5.183, "simple_Propeller": -4.881, "bp_simpleParams": [ -0.200, -0.116, -0.613, -5.183, -4.881, 0.891 ], "bp_params": [ -0.198, -0.119, -0.613, -5.117, -4.950, 0.891 ], "frame": { "rmsd": null, "origin": [ 139.409, 201.996, 187.219 ], "x_axis": [ -0.868, 0.403, 0.290 ], "y_axis": [ 0.412, 0.260, 0.873 ], "z_axis": [ 0.276, 0.878, -0.392 ], "quaternion": [ -0.004, 0.257, 0.794, 0.551 ] } }, { "index": 32, "nt1": "///A/37", "nt2": "///A/489", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.681, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.271, "chi2": -151.960, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 51.750, "C1C1_dist": 10.722, "N1N9_dist": 8.973, "C6C8_dist": 9.902, "CNNC_torsion": -1.765, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 3.104, "planarity": 0.074, "simple_Shear": 0.214, "simple_Stretch": -0.118, "simple_Buckle": -2.283, "simple_Propeller": -2.103, "bp_simpleParams": [ 0.214, -0.118, -0.173, -2.283, -2.103, 0.364 ], "bp_params": [ 0.212, -0.122, -0.173, -2.318, -2.065, 0.364 ], "frame": { "rmsd": null, "origin": [ 138.867, 204.876, 185.018 ], "x_axis": [ -0.369, 0.481, 0.796 ], "y_axis": [ 0.880, -0.095, 0.466 ], "z_axis": [ 0.300, 0.872, -0.388 ], "quaternion": [ -0.192, 0.528, 0.644, 0.519 ] } }, { "index": 33, "nt1": "///A/38", "nt2": "///A/488", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.170, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.586, "chi2": -160.255, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.530, "C1C1_dist": 10.463, "N1N9_dist": 8.777, "C6C8_dist": 9.712, "CNNC_torsion": -13.832, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.97],N1-N3(imino)[2.86]", "interBase_angle": 3.157, "planarity": 0.238, "simple_Shear": 0.095, "simple_Stretch": -0.294, "simple_Buckle": 2.675, "simple_Propeller": -1.677, "bp_simpleParams": [ 0.095, -0.294, 1.151, 2.675, -1.677, -0.357 ], "bp_params": [ 0.091, -0.295, 1.151, 2.651, -1.714, -0.357 ], "frame": { "rmsd": null, "origin": [ 138.786, 207.981, 184.084 ], "x_axis": [ 0.079, 0.149, 0.986 ], "y_axis": [ 0.919, -0.395, -0.014 ], "z_axis": [ 0.387, 0.906, -0.168 ], "quaternion": [ -0.359, 0.641, 0.417, 0.536 ] } }, { "index": 34, "nt1": "///A/39", "nt2": "///A/487", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.224, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.464, "chi2": 171.412, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.793, "C1C1_dist": 10.812, "N1N9_dist": 8.903, "C6C8_dist": 9.750, "CNNC_torsion": -14.696, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.88]", "interBase_angle": 4.232, "planarity": 0.229, "simple_Shear": 0.151, "simple_Stretch": -0.297, "simple_Buckle": 2.461, "simple_Propeller": -3.443, "bp_simpleParams": [ 0.151, -0.297, 0.916, 2.461, -3.443, -2.767 ], "bp_params": [ 0.148, -0.298, 0.916, 2.427, -3.466, -2.767 ], "frame": { "rmsd": null, "origin": [ 138.052, 211.926, 185.011 ], "x_axis": [ 0.539, -0.075, 0.839 ], "y_axis": [ 0.767, -0.369, -0.525 ], "z_axis": [ 0.349, 0.926, -0.142 ], "quaternion": [ 0.507, -0.716, -0.242, -0.415 ] } }, { "index": 35, "nt1": "///A/39", "nt2": "///A/659", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -176.224, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 121.824, "chi2": -106.551, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 38.864, "C1C1_dist": 9.985, "N1N9_dist": 9.659, "C6C8_dist": 11.087, "CNNC_torsion": -43.492, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.18],O2(carbonyl)-N6(amino)[3.95]", "interBase_angle": 28.563, "planarity": 0.455, "simple_Shear": 5.659, "simple_Stretch": 4.278, "simple_Buckle": 17.791, "simple_Propeller": -22.345, "bp_simpleParams": [ 5.659, 4.278, 2.151, 17.791, -22.345, 53.824 ], "bp_params": [ 7.089, -0.262, 2.151, -0.404, -28.560, 55.289 ], "frame": { "rmsd": null, "origin": [ 137.823, 211.723, 181.456 ], "x_axis": [ 0.024, -0.106, 0.994 ], "y_axis": [ 0.944, -0.325, -0.057 ], "z_axis": [ 0.329, 0.940, 0.092 ], "quaternion": [ -0.445, 0.560, 0.374, 0.590 ] } }, { "index": 36, "nt1": "///A/40", "nt2": "///A/486", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.358, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.728, "chi2": -170.306, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.378, "C1C1_dist": 10.520, "N1N9_dist": 8.834, "C6C8_dist": 9.790, "CNNC_torsion": -10.185, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.85],O4(carbonyl)-N6(amino)[2.97]", "interBase_angle": 4.076, "planarity": 0.155, "simple_Shear": -0.100, "simple_Stretch": -0.170, "simple_Buckle": 0.826, "simple_Propeller": -3.991, "bp_simpleParams": [ -0.100, -0.170, 0.643, 0.826, -3.991, -0.114 ], "bp_params": [ -0.098, -0.171, 0.643, 0.884, -3.979, -0.114 ], "frame": { "rmsd": null, "origin": [ 137.234, 215.866, 185.182 ], "x_axis": [ 0.805, -0.250, 0.537 ], "y_axis": [ 0.448, -0.336, -0.828 ], "z_axis": [ 0.388, 0.908, -0.158 ], "quaternion": [ 0.573, -0.758, -0.065, -0.305 ] } }, { "index": 37, "nt1": "///A/41", "nt2": "///A/485", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.941, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.872, "chi2": -177.852, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.851, "C1C1_dist": 10.736, "N1N9_dist": 8.932, "C6C8_dist": 9.828, "CNNC_torsion": -3.678, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.93],N1-N3(imino)[2.89]", "interBase_angle": 4.381, "planarity": 0.130, "simple_Shear": 0.066, "simple_Stretch": -0.129, "simple_Buckle": 0.137, "simple_Propeller": 4.379, "bp_simpleParams": [ 0.066, -0.129, 0.584, 0.137, 4.379, -1.283 ], "bp_params": [ 0.064, -0.130, 0.584, 0.188, 4.377, -1.282 ], "frame": { "rmsd": null, "origin": [ 137.971, 219.077, 186.412 ], "x_axis": [ 0.852, -0.524, -0.007 ], "y_axis": [ -0.073, -0.106, -0.992 ], "z_axis": [ 0.519, 0.845, -0.129 ], "quaternion": [ 0.636, -0.722, 0.207, -0.177 ] } }, { "index": 38, "nt1": "///A/42", "nt2": "///A/484", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 175.893, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.779, "chi2": -163.996, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.050, "C1C1_dist": 10.540, "N1N9_dist": 8.804, "C6C8_dist": 9.746, "CNNC_torsion": -6.949, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.85],N2(amino)-O2(carbonyl)[2.70]", "interBase_angle": 3.915, "planarity": 0.162, "simple_Shear": -0.194, "simple_Stretch": -0.291, "simple_Buckle": 3.482, "simple_Propeller": 1.789, "bp_simpleParams": [ -0.194, -0.291, 0.801, 3.482, 1.789, 1.004 ], "bp_params": [ -0.190, -0.294, 0.801, 3.456, 1.839, 1.003 ], "frame": { "rmsd": null, "origin": [ 140.767, 221.200, 187.590 ], "x_axis": [ 0.671, -0.582, -0.460 ], "y_axis": [ -0.462, 0.157, -0.873 ], "z_axis": [ 0.581, 0.798, -0.164 ], "quaternion": [ 0.645, -0.647, 0.403, -0.047 ] } }, { "index": 39, "nt1": "///A/43", "nt2": "///A/483", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 176.964, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.614, "chi2": 167.891, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.984, "C1C1_dist": 10.887, "N1N9_dist": 8.978, "C6C8_dist": 9.858, "CNNC_torsion": -6.630, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 1.936, "planarity": 0.078, "simple_Shear": -0.142, "simple_Stretch": -0.155, "simple_Buckle": 1.920, "simple_Propeller": -0.249, "bp_simpleParams": [ -0.142, -0.155, 0.390, 1.920, -0.249, -1.182 ], "bp_params": [ -0.140, -0.156, 0.390, 1.923, -0.231, -1.181 ], "frame": { "rmsd": null, "origin": [ 144.544, 222.140, 188.558 ], "x_axis": [ 0.256, -0.396, -0.882 ], "y_axis": [ -0.689, 0.566, -0.454 ], "z_axis": [ 0.678, 0.723, -0.128 ], "quaternion": [ 0.651, -0.452, 0.600, 0.112 ] } }, { "index": 40, "nt1": "///A/44", "nt2": "///A/481", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -151.184, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.546, "chi2": -146.985, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 56.607, "C1C1_dist": 10.490, "N1N9_dist": 8.832, "C6C8_dist": 9.811, "CNNC_torsion": 11.952, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.01],N1-N3(imino)[2.82]", "interBase_angle": 16.497, "planarity": 0.199, "simple_Shear": 0.022, "simple_Stretch": -0.117, "simple_Buckle": -5.507, "simple_Propeller": 15.551, "bp_simpleParams": [ 0.022, -0.117, -0.134, -5.507, 15.551, 1.458 ], "bp_params": [ 0.021, -0.117, -0.134, -5.418, 15.582, 1.470 ], "frame": { "rmsd": null, "origin": [ 147.226, 223.846, 185.362 ], "x_axis": [ -0.282, 0.324, -0.903 ], "y_axis": [ -0.472, 0.773, 0.425 ], "z_axis": [ 0.835, 0.546, -0.065 ], "quaternion": [ 0.597, -0.051, 0.728, 0.333 ] } }, { "index": 41, "nt1": "///A/45", "nt2": "///A/183", "bp": "G+A", "name": "--", "Saenger": "10-X", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -170.473, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 111.853, "chi2": -106.484, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 5.412, "C1C1_dist": 9.888, "N1N9_dist": 9.088, "C6C8_dist": 9.894, "CNNC_torsion": 141.901, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[3.18],N2(amino)-N1[2.86],N3-N6(amino)[2.94]", "interBase_angle": 13.492, "planarity": 0.173, "simple_Shear": 1.771, "simple_Stretch": 4.699, "simple_Buckle": -10.623, "simple_Propeller": -8.318, "bp_simpleParams": [ 1.771, 4.699, 0.130, -10.623, -8.318, -67.954 ], "bp_params": [ 3.890, -3.175, 0.130, -4.496, 12.721, -68.242 ], "frame": { "rmsd": null, "origin": [ 151.274, 223.611, 184.719 ], "x_axis": [ -0.616, 0.779, -0.116 ], "y_axis": [ 0.265, 0.344, 0.901 ], "z_axis": [ 0.742, 0.524, -0.418 ], "quaternion": [ 0.278, 0.339, 0.771, 0.462 ] } }, { "index": 42, "nt1": "///A/45", "nt2": "///A/480", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.473, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.388, "chi2": -160.539, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.789, "C1C1_dist": 10.634, "N1N9_dist": 8.946, "C6C8_dist": 9.924, "CNNC_torsion": -7.709, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.99],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 10.343, "planarity": 0.170, "simple_Shear": -0.223, "simple_Stretch": -0.094, "simple_Buckle": 4.320, "simple_Propeller": -9.397, "bp_simpleParams": [ -0.223, -0.094, -0.209, 4.320, -9.397, 2.481 ], "bp_params": [ -0.221, -0.098, -0.209, 4.492, -9.316, 2.487 ], "frame": { "rmsd": null, "origin": [ 149.673, 224.755, 182.967 ], "x_axis": [ -0.756, 0.345, -0.556 ], "y_axis": [ -0.234, 0.651, 0.722 ], "z_axis": [ 0.611, 0.676, -0.412 ], "quaternion": [ 0.347, 0.033, 0.839, 0.416 ] } }, { "index": 43, "nt1": "///A/46", "nt2": "///A/181", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.981, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.962, "chi2": -159.211, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.869, "C1C1_dist": 10.614, "N1N9_dist": 8.896, "C6C8_dist": 9.833, "CNNC_torsion": 3.804, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 5.416, "planarity": 0.187, "simple_Shear": 0.189, "simple_Stretch": -0.195, "simple_Buckle": -5.252, "simple_Propeller": -1.323, "bp_simpleParams": [ 0.189, -0.195, -0.588, -5.252, -1.323, 0.501 ], "bp_params": [ 0.186, -0.198, -0.588, -5.270, -1.247, 0.500 ], "frame": { "rmsd": null, "origin": [ 160.626, 227.906, 195.062 ], "x_axis": [ 0.609, 0.500, -0.615 ], "y_axis": [ -0.790, 0.452, -0.414 ], "z_axis": [ 0.071, 0.739, 0.670 ], "quaternion": [ 0.826, -0.349, 0.208, 0.390 ] } }, { "index": 44, "nt1": "///A/47", "nt2": "///A/180", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.973, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.677, "chi2": -159.760, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.552, "C1C1_dist": 10.454, "N1N9_dist": 8.834, "C6C8_dist": 9.840, "CNNC_torsion": 2.994, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.68],N3-N1(imino)[2.85],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 4.976, "planarity": 0.075, "simple_Shear": 0.195, "simple_Stretch": -0.169, "simple_Buckle": 3.164, "simple_Propeller": 3.841, "bp_simpleParams": [ 0.195, -0.169, 0.001, 3.164, 3.841, 2.517 ], "bp_params": [ 0.192, -0.172, 0.001, 3.225, 3.790, 2.518 ], "frame": { "rmsd": null, "origin": [ 162.087, 229.775, 197.770 ], "x_axis": [ 0.161, 0.636, -0.755 ], "y_axis": [ -0.987, 0.099, -0.126 ], "z_axis": [ -0.005, 0.765, 0.644 ], "quaternion": [ 0.690, -0.323, 0.272, 0.588 ] } }, { "index": 45, "nt1": "///A/49", "nt2": "///A/119", "bp": "A+U", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": 60.264, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 54.112, "chi2": -172.718, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 59.176, "C1C1_dist": 8.360, "N1N9_dist": 6.754, "C6C8_dist": 6.193, "CNNC_torsion": 5.405, "hbonds_num": 2, "hbonds_desc": "N7-N3(imino)[2.93],N6(amino)-O4(carbonyl)[3.25]", "interBase_angle": 19.928, "planarity": 0.273, "simple_Shear": -3.318, "simple_Stretch": 2.030, "simple_Buckle": 7.962, "simple_Propeller": 18.268, "bp_simpleParams": [ -3.318, 2.030, 0.569, 7.962, 18.268, 65.505 ], "bp_params": [ 0.620, -3.840, 0.569, -19.035, -5.899, 64.854 ], "frame": { "rmsd": null, "origin": [ 167.576, 232.909, 204.809 ], "x_axis": [ 0.731, -0.533, -0.426 ], "y_axis": [ 0.596, 0.196, 0.778 ], "z_axis": [ -0.332, -0.823, 0.461 ], "quaternion": [ 0.773, 0.518, 0.030, -0.366 ] } }, { "index": 46, "nt1": "///A/51", "nt2": "///A/117", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -139.158, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 93.308, "chi2": -72.698, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 11.687, "C1C1_dist": 9.739, "N1N9_dist": 8.469, "C6C8_dist": 8.929, "CNNC_torsion": -63.483, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.72],N3-N6(amino)[2.84]", "interBase_angle": 13.892, "planarity": 0.249, "simple_Shear": 7.197, "simple_Stretch": 2.285, "simple_Buckle": 2.285, "simple_Propeller": 13.702, "bp_simpleParams": [ 7.197, 2.285, 0.678, 2.285, 13.702, -3.402 ], "bp_params": [ 6.541, -3.774, 0.678, 11.653, 7.561, -3.392 ], "frame": { "rmsd": null, "origin": [ 165.811, 232.244, 208.350 ], "x_axis": [ 0.039, 0.649, 0.760 ], "y_axis": [ -0.996, 0.085, -0.022 ], "z_axis": [ -0.078, -0.756, 0.650 ], "quaternion": [ 0.666, 0.276, -0.315, 0.618 ] } }, { "index": 47, "nt1": "///A/51", "nt2": "///A/119", "bp": "G+U", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -139.158, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 39.273, "chi2": -172.718, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 69.096, "C1C1_dist": 10.249, "N1N9_dist": 8.873, "C6C8_dist": 10.514, "CNNC_torsion": -150.676, "hbonds_num": 1, "hbonds_desc": "N1(imino)-O2(carbonyl)[3.11]", "interBase_angle": 34.370, "planarity": 0.493, "simple_Shear": 3.893, "simple_Stretch": 1.598, "simple_Buckle": 16.266, "simple_Propeller": 30.277, "bp_simpleParams": [ 3.893, 1.598, 2.442, 16.266, 30.277, 158.571 ], "bp_params": [ 0.213, 4.203, 2.442, -20.656, 27.470, 158.816 ], "frame": { "rmsd": null, "origin": [ 168.190, 233.817, 208.700 ], "x_axis": [ 0.973, -0.088, 0.212 ], "y_axis": [ -0.129, 0.550, 0.825 ], "z_axis": [ -0.189, -0.830, 0.524 ], "quaternion": [ 0.873, 0.474, -0.115, 0.012 ] } }, { "index": 48, "nt1": "///A/52", "nt2": "///A/118", "bp": "A+A", "name": "--", "Saenger": "02-II", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": -177.127, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 21.619, "chi2": -127.329, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 9.184, "C1C1_dist": 11.691, "N1N9_dist": 8.895, "C6C8_dist": 6.963, "CNNC_torsion": -105.247, "hbonds_num": 3, "hbonds_desc": "OP2-N6(amino)[2.85],N7-N6(amino)[3.14],N6(amino)-N7[3.84]", "interBase_angle": 14.143, "planarity": 0.228, "simple_Shear": -7.956, "simple_Stretch": 1.503, "simple_Buckle": -13.574, "simple_Propeller": 3.973, "bp_simpleParams": [ -7.956, 1.503, -0.470, -13.574, 3.973, 164.748 ], "bp_params": [ 5.671, -5.779, -0.470, 8.882, -11.006, 164.772 ], "frame": { "rmsd": null, "origin": [ 164.486, 227.019, 207.165 ], "x_axis": [ 0.763, -0.526, -0.375 ], "y_axis": [ 0.592, 0.337, 0.732 ], "z_axis": [ -0.259, -0.781, 0.569 ], "quaternion": [ 0.817, 0.463, 0.036, -0.342 ] } }, { "index": 49, "nt1": "///A/53", "nt2": "///A/116", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -170.656, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 12.601, "chi2": -152.790, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 94.508, "C1C1_dist": 9.895, "N1N9_dist": 8.654, "C6C8_dist": 9.139, "CNNC_torsion": 47.048, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.99],N6(amino)-O2'(hydroxyl)[3.22],N6(amino)-N3[2.84]", "interBase_angle": 6.861, "planarity": 0.282, "simple_Shear": -6.991, "simple_Stretch": 2.142, "simple_Buckle": -5.926, "simple_Propeller": -3.456, "bp_simpleParams": [ -6.991, 2.142, -1.266, -5.926, -3.456, -2.248 ], "bp_params": [ -6.439, -3.463, -1.266, -1.712, -6.643, -2.251 ], "frame": { "rmsd": null, "origin": [ 163.155, 223.786, 208.078 ], "x_axis": [ 0.086, 0.632, 0.770 ], "y_axis": [ -0.923, 0.342, -0.178 ], "z_axis": [ -0.376, -0.696, 0.613 ], "quaternion": [ 0.714, 0.181, -0.401, 0.544 ] } }, { "index": 50, "nt1": "///A/54", "nt2": "///A/115", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.916, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.411, "chi2": -161.074, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.464, "C1C1_dist": 10.527, "N1N9_dist": 8.895, "C6C8_dist": 9.882, "CNNC_torsion": -0.183, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.99],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 8.299, "planarity": 0.127, "simple_Shear": -0.218, "simple_Stretch": -0.137, "simple_Buckle": -7.283, "simple_Propeller": -3.980, "bp_simpleParams": [ -0.218, -0.137, -0.649, -7.283, -3.980, 2.817 ], "bp_params": [ -0.215, -0.141, -0.649, -7.220, -4.094, 2.813 ], "frame": { "rmsd": null, "origin": [ 161.571, 221.267, 211.274 ], "x_axis": [ -0.707, 0.667, 0.236 ], "y_axis": [ -0.562, -0.326, -0.760 ], "z_axis": [ -0.430, -0.670, 0.605 ], "quaternion": [ 0.378, -0.060, -0.440, 0.812 ] } }, { "index": 51, "nt1": "///A/54", "nt2": "///A/125", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "t.W", "DSSR": "t.+W", "intra_chain": true, "chi1": -160.916, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 84.084, "chi2": -138.763, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 45.018, "C1C1_dist": 12.328, "N1N9_dist": 11.392, "C6C8_dist": 13.138, "CNNC_torsion": 149.276, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N1[3.98]", "interBase_angle": 32.328, "planarity": 0.371, "simple_Shear": 4.690, "simple_Stretch": 5.112, "simple_Buckle": 14.569, "simple_Propeller": -28.859, "bp_simpleParams": [ 4.690, 5.112, 0.905, 14.569, -28.859, -143.276 ], "bp_params": [ 2.021, -6.636, 0.905, -32.245, 2.318, -141.886 ], "frame": { "rmsd": null, "origin": [ 164.102, 218.864, 210.438 ], "x_axis": [ -0.738, -0.087, -0.669 ], "y_axis": [ 0.385, -0.868, -0.313 ], "z_axis": [ -0.553, -0.489, 0.674 ], "quaternion": [ -0.130, -0.337, -0.221, 0.906 ] } }, { "index": 52, "nt1": "///A/55", "nt2": "///A/114", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 177.450, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.571, "chi2": -163.796, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.273, "C1C1_dist": 10.615, "N1N9_dist": 8.898, "C6C8_dist": 9.871, "CNNC_torsion": -2.427, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.72]", "interBase_angle": 4.855, "planarity": 0.063, "simple_Shear": -0.196, "simple_Stretch": -0.134, "simple_Buckle": -4.826, "simple_Propeller": -0.532, "bp_simpleParams": [ -0.196, -0.134, -0.027, -4.826, -0.532, 1.897 ], "bp_params": [ -0.194, -0.137, -0.027, -4.817, -0.604, 1.895 ], "frame": { "rmsd": null, "origin": [ 160.402, 220.662, 215.090 ], "x_axis": [ -0.819, 0.560, -0.123 ], "y_axis": [ -0.257, -0.549, -0.795 ], "z_axis": [ -0.513, -0.620, 0.594 ], "quaternion": [ 0.237, -0.185, -0.411, 0.861 ] } }, { "index": 53, "nt1": "///A/55", "nt2": "///A/126", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": 177.450, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 88.363, "chi2": -135.063, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.268, "C1C1_dist": 8.567, "N1N9_dist": 8.229, "C6C8_dist": 10.474, "CNNC_torsion": 162.547, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[2.75],N2(amino)-N3[3.29]", "interBase_angle": 22.988, "planarity": 0.300, "simple_Shear": 6.885, "simple_Stretch": 3.863, "simple_Buckle": 15.561, "simple_Propeller": -16.920, "bp_simpleParams": [ 6.885, 3.863, 1.353, 15.561, -16.920, -151.289 ], "bp_params": [ -2.336, -7.541, 1.353, -22.934, 1.578, -150.732 ], "frame": { "rmsd": null, "origin": [ 162.802, 217.601, 213.944 ], "x_axis": [ -0.431, -0.384, -0.817 ], "y_axis": [ 0.625, -0.779, 0.037 ], "z_axis": [ -0.651, -0.495, 0.576 ], "quaternion": [ -0.302, -0.440, -0.137, 0.835 ] } }, { "index": 54, "nt1": "///A/56", "nt2": "///A/113", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.468, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.283, "chi2": 168.500, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 48.365, "C1C1_dist": 10.758, "N1N9_dist": 8.895, "C6C8_dist": 9.791, "CNNC_torsion": -5.851, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.92],N1-N3(imino)[2.85]", "interBase_angle": 5.151, "planarity": 0.089, "simple_Shear": 0.101, "simple_Stretch": -0.124, "simple_Buckle": -4.904, "simple_Propeller": -1.575, "bp_simpleParams": [ 0.101, -0.124, 0.152, -4.904, -1.575, -1.339 ], "bp_params": [ 0.099, -0.125, 0.152, -4.928, -1.500, -1.338 ], "frame": { "rmsd": null, "origin": [ 158.586, 219.761, 218.029 ], "x_axis": [ -0.770, 0.077, -0.633 ], "y_axis": [ 0.347, -0.783, -0.517 ], "z_axis": [ -0.535, -0.618, 0.576 ], "quaternion": [ -0.076, -0.330, -0.321, 0.884 ] } }, { "index": 55, "nt1": "///A/57", "nt2": "///A/70", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.093, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.371, "chi2": -140.424, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 51.344, "C1C1_dist": 10.754, "N1N9_dist": 8.942, "C6C8_dist": 9.831, "CNNC_torsion": -4.109, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.82],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.87]", "interBase_angle": 2.645, "planarity": 0.037, "simple_Shear": 0.186, "simple_Stretch": -0.177, "simple_Buckle": -2.228, "simple_Propeller": -1.426, "bp_simpleParams": [ 0.186, -0.177, 0.101, -2.228, -1.426, -1.835 ], "bp_params": [ 0.184, -0.180, 0.101, -2.248, -1.394, -1.835 ], "frame": { "rmsd": null, "origin": [ 155.176, 218.341, 218.797 ], "x_axis": [ -0.276, -0.477, -0.834 ], "y_axis": [ 0.758, -0.642, 0.116 ], "z_axis": [ -0.591, -0.600, 0.539 ], "quaternion": [ -0.394, -0.454, -0.154, 0.784 ] } }, { "index": 56, "nt1": "///A/58", "nt2": "///A/69", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.929, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.216, "chi2": -161.077, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.814, "C1C1_dist": 10.617, "N1N9_dist": 8.924, "C6C8_dist": 9.886, "CNNC_torsion": -0.428, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 8.507, "planarity": 0.111, "simple_Shear": -0.189, "simple_Stretch": -0.129, "simple_Buckle": -6.925, "simple_Propeller": -4.941, "bp_simpleParams": [ -0.189, -0.129, -0.509, -6.925, -4.941, 1.881 ], "bp_params": [ -0.188, -0.132, -0.509, -6.862, -5.028, 1.879 ], "frame": { "rmsd": null, "origin": [ 151.746, 216.692, 218.988 ], "x_axis": [ 0.299, -0.541, -0.786 ], "y_axis": [ 0.719, -0.414, 0.559 ], "z_axis": [ -0.628, -0.732, 0.265 ], "quaternion": [ 0.536, 0.602, 0.074, -0.587 ] } }, { "index": 57, "nt1": "///A/58", "nt2": "///A/73", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -178.929, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 86.850, "chi2": -154.083, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.340, "C1C1_dist": 8.202, "N1N9_dist": 7.863, "C6C8_dist": 10.166, "CNNC_torsion": -178.577, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[2.89],N2(amino)-N3[2.94]", "interBase_angle": 4.524, "planarity": 0.152, "simple_Shear": 6.992, "simple_Stretch": 3.636, "simple_Buckle": 4.501, "simple_Propeller": 0.453, "bp_simpleParams": [ 6.992, 3.636, 0.834, 4.501, 0.453, -151.928 ], "bp_params": [ -2.658, -7.419, 0.834, -2.994, -3.391, -151.930 ], "frame": { "rmsd": null, "origin": [ 152.744, 218.338, 222.556 ], "x_axis": [ 0.815, -0.468, 0.342 ], "y_axis": [ -0.109, 0.455, 0.884 ], "z_axis": [ -0.570, -0.757, 0.319 ], "quaternion": [ 0.805, 0.510, -0.283, -0.112 ] } }, { "index": 58, "nt1": "///A/59", "nt2": "///A/68", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -151.095, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.438, "chi2": -160.261, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.297, "C1C1_dist": 10.569, "N1N9_dist": 8.893, "C6C8_dist": 9.860, "CNNC_torsion": -0.698, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 7.923, "planarity": 0.097, "simple_Shear": -0.189, "simple_Stretch": -0.146, "simple_Buckle": -7.113, "simple_Propeller": -3.489, "bp_simpleParams": [ -0.189, -0.146, -0.446, -7.113, -3.489, 1.460 ], "bp_params": [ -0.187, -0.148, -0.446, -7.066, -3.584, 1.458 ], "frame": { "rmsd": null, "origin": [ 148.498, 214.997, 219.368 ], "x_axis": [ 0.680, -0.666, -0.306 ], "y_axis": [ 0.427, 0.022, 0.904 ], "z_axis": [ -0.596, -0.746, 0.299 ], "quaternion": [ 0.707, 0.583, -0.102, -0.386 ] } }, { "index": 59, "nt1": "///A/60", "nt2": "///A/66", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "--", "DSSR": "--", "intra_chain": true, "chi1": -87.803, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 20.412, "chi2": -173.293, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 6.028, "C1C1_dist": 14.637, "N1N9_dist": 11.806, "C6C8_dist": 10.879, "CNNC_torsion": -16.189, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.35]", "interBase_angle": 13.398, "planarity": 0.191, "simple_Shear": 0.912, "simple_Stretch": 3.312, "simple_Buckle": -9.602, "simple_Propeller": -9.344, "bp_simpleParams": [ 0.912, 3.312, 0.305, -9.602, -9.344, -80.855 ], "bp_params": [ 1.297, 3.180, 0.305, -10.641, -8.141, -80.754 ], "frame": { "rmsd": null, "origin": [ 143.760, 209.776, 219.728 ], "x_axis": [ 0.828, -0.286, 0.482 ], "y_axis": [ -0.294, 0.510, 0.808 ], "z_axis": [ -0.477, -0.811, 0.339 ], "quaternion": [ 0.818, 0.495, -0.293, 0.002 ] } }, { "index": 60, "nt1": "///A/60", "nt2": "///A/88", "bp": "G+G", "name": "--", "Saenger": "06-VI", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -87.803, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 63.571, "chi2": -150.613, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 33.162, "C1C1_dist": 10.985, "N1N9_dist": 9.117, "C6C8_dist": 8.765, "CNNC_torsion": 0.535, "hbonds_num": 2, "hbonds_desc": "N1(imino)-O6(carbonyl)[2.78],N2(amino)-N7[2.81]", "interBase_angle": 30.714, "planarity": 0.449, "simple_Shear": -2.541, "simple_Stretch": 2.645, "simple_Buckle": -1.671, "simple_Propeller": -30.669, "bp_simpleParams": [ -2.541, 2.645, 0.092, -1.671, -30.669, -83.509 ], "bp_params": [ 1.407, 3.387, 0.092, -28.762, -10.776, -81.953 ], "frame": { "rmsd": null, "origin": [ 143.825, 209.856, 219.594 ], "x_axis": [ 0.834, -0.258, 0.487 ], "y_axis": [ -0.376, 0.381, 0.845 ], "z_axis": [ -0.403, -0.888, 0.221 ], "quaternion": [ 0.780, 0.555, -0.285, 0.038 ] } }, { "index": 61, "nt1": "///A/61", "nt2": "///A/93", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.616, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.514, "chi2": -156.873, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 64.425, "C1C1_dist": 10.262, "N1N9_dist": 8.692, "C6C8_dist": 9.740, "CNNC_torsion": 7.561, "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[3.13],N1*O2(carbonyl)[2.88]", "unusual_base2base_hbonds": 1, "interBase_angle": 13.044, "planarity": 0.157, "simple_Shear": -1.396, "simple_Stretch": -0.073, "simple_Buckle": -6.668, "simple_Propeller": 11.211, "bp_simpleParams": [ -1.396, -0.073, -0.158, -6.668, 11.211, 6.512 ], "bp_params": [ -1.373, -0.266, -0.158, -8.152, 10.183, 6.522 ], "frame": { "rmsd": null, "origin": [ 136.633, 207.075, 229.866 ], "x_axis": [ -0.321, 0.226, -0.920 ], "y_axis": [ 0.535, 0.844, 0.021 ], "z_axis": [ 0.781, -0.486, -0.392 ], "quaternion": [ 0.532, 0.238, 0.800, -0.145 ] } }, { "index": 62, "nt1": "///A/62", "nt2": "///A/92", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.158, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 60.340, "chi2": -157.660, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.939, "C1C1_dist": 10.259, "N1N9_dist": 8.768, "C6C8_dist": 9.848, "CNNC_torsion": 1.388, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.70],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[3.01]", "interBase_angle": 10.958, "planarity": 0.262, "simple_Shear": 0.229, "simple_Stretch": -0.173, "simple_Buckle": 6.683, "simple_Propeller": 8.684, "bp_simpleParams": [ 0.229, -0.173, 0.649, 6.683, 8.684, 6.523 ], "bp_params": [ 0.226, -0.178, 0.649, 6.860, 8.545, 6.530 ], "frame": { "rmsd": null, "origin": [ 138.519, 204.826, 227.955 ], "x_axis": [ -0.036, 0.647, -0.761 ], "y_axis": [ 0.596, 0.625, 0.504 ], "z_axis": [ 0.802, -0.436, -0.408 ], "quaternion": [ 0.543, 0.432, 0.719, 0.024 ] } }, { "index": 63, "nt1": "///A/64", "nt2": "///A/90", "bp": "A+A", "name": "--", "Saenger": "01-I", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": 168.277, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 11.452, "chi2": -118.822, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 33.431, "C1C1_dist": 13.765, "N1N9_dist": 11.150, "C6C8_dist": 10.994, "CNNC_torsion": 152.536, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N1[2.62]", "interBase_angle": 28.170, "planarity": 0.316, "simple_Shear": -2.117, "simple_Stretch": 1.632, "simple_Buckle": 5.149, "simple_Propeller": -27.695, "bp_simpleParams": [ -2.117, 1.632, -0.557, 5.149, -27.695, 161.197 ], "bp_params": [ -1.110, -2.432, -0.557, 25.846, 11.205, 160.803 ], "frame": { "rmsd": null, "origin": [ 145.047, 202.066, 220.698 ], "x_axis": [ -0.667, -0.035, -0.745 ], "y_axis": [ -0.742, 0.134, 0.657 ], "z_axis": [ 0.076, 0.990, -0.116 ], "quaternion": [ 0.297, -0.281, 0.692, 0.595 ] } }, { "index": 64, "nt1": "///A/65", "nt2": "///A/89", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.611, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.045, "chi2": -160.508, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.339, "C1C1_dist": 10.625, "N1N9_dist": 8.841, "C6C8_dist": 9.737, "CNNC_torsion": -12.924, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.94],N1-N3(imino)[2.84]", "interBase_angle": 25.547, "planarity": 0.285, "simple_Shear": -0.022, "simple_Stretch": -0.138, "simple_Buckle": -13.553, "simple_Propeller": -21.656, "bp_simpleParams": [ -0.022, -0.138, -0.543, -13.553, -21.656, 0.271 ], "bp_params": [ -0.024, -0.138, -0.543, -13.785, -21.508, 0.274 ], "frame": { "rmsd": null, "origin": [ 144.577, 205.659, 219.194 ], "x_axis": [ -0.168, 0.083, 0.982 ], "y_axis": [ 0.977, -0.123, 0.177 ], "z_axis": [ 0.135, 0.989, -0.060 ], "quaternion": [ -0.403, 0.504, 0.526, 0.555 ] } }, { "index": 65, "nt1": "///A/65", "nt2": "///A/503", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -175.611, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 126.956, "chi2": -146.236, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 35.892, "C1C1_dist": 7.651, "N1N9_dist": 7.366, "C6C8_dist": 8.920, "CNNC_torsion": -24.441, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-O2(carbonyl)[3.15],O2'(hydroxyl)-N3[3.04],N3-N4(amino)[2.78]", "interBase_angle": 42.555, "planarity": 0.498, "simple_Shear": 4.811, "simple_Stretch": 2.365, "simple_Buckle": -20.498, "simple_Propeller": -37.293, "bp_simpleParams": [ 4.811, 2.365, 0.697, -20.498, -37.293, 62.515 ], "bp_params": [ 5.233, -1.163, 0.697, -39.136, -16.711, 60.094 ], "frame": { "rmsd": null, "origin": [ 146.536, 204.665, 217.598 ], "x_axis": [ -0.601, 0.209, 0.772 ], "y_axis": [ 0.796, 0.249, 0.552 ], "z_axis": [ -0.077, 0.946, -0.316 ], "quaternion": [ -0.288, 0.342, 0.736, 0.509 ] } }, { "index": 66, "nt1": "///A/66", "nt2": "///A/88", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.293, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.949, "chi2": -150.613, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.427, "C1C1_dist": 10.567, "N1N9_dist": 8.820, "C6C8_dist": 9.771, "CNNC_torsion": -7.076, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 18.208, "planarity": 0.304, "simple_Shear": 0.192, "simple_Stretch": -0.148, "simple_Buckle": -15.342, "simple_Propeller": -9.806, "bp_simpleParams": [ 0.192, -0.148, -0.237, -15.342, -9.806, 2.217 ], "bp_params": [ 0.189, -0.152, -0.237, -15.552, -9.468, 2.204 ], "frame": { "rmsd": null, "origin": [ 143.828, 209.354, 217.944 ], "x_axis": [ 0.393, 0.042, 0.918 ], "y_axis": [ 0.867, -0.350, -0.355 ], "z_axis": [ 0.307, 0.936, -0.174 ], "quaternion": [ -0.466, 0.692, 0.328, 0.442 ] } }, { "index": 67, "nt1": "///A/67", "nt2": "///A/74", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.953, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.410, "chi2": -109.888, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 59.446, "C1C1_dist": 10.160, "N1N9_dist": 8.602, "C6C8_dist": 9.566, "CNNC_torsion": -6.106, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.00],N1-N3(imino)[2.87]", "interBase_angle": 23.788, "planarity": 0.336, "simple_Shear": 0.076, "simple_Stretch": -0.349, "simple_Buckle": 20.938, "simple_Propeller": 11.291, "bp_simpleParams": [ 0.076, -0.349, 1.691, 20.938, 11.291, 4.776 ], "bp_params": [ 0.068, -0.351, 1.691, 21.219, 10.754, 4.716 ], "frame": { "rmsd": null, "origin": [ 145.371, 212.169, 219.128 ], "x_axis": [ 0.861, -0.304, 0.408 ], "y_axis": [ 0.112, -0.669, -0.735 ], "z_axis": [ 0.496, 0.678, -0.542 ], "quaternion": [ -0.403, 0.876, -0.055, 0.258 ] } }, { "index": 68, "nt1": "///A/70", "nt2": "///A/71", "bp": "G-A", "name": "Platform", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -140.424, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 134.451, "chi2": 59.274, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 82.525, "C1C1_dist": 7.677, "N1N9_dist": 8.523, "C6C8_dist": 10.849, "CNNC_torsion": 10.475, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N1[3.61]", "interBase_angle": 32.012, "planarity": 0.407, "simple_Shear": 1.869, "simple_Stretch": 5.667, "simple_Buckle": -31.910, "simple_Propeller": 2.550, "bp_simpleParams": [ 1.869, 5.667, -1.642, -31.910, 2.550, 111.657 ], "bp_params": [ 3.577, 4.776, -1.642, -29.460, 12.525, 110.181 ], "frame": { "rmsd": null, "origin": [ 156.032, 219.888, 221.445 ], "x_axis": [ 0.540, -0.736, -0.409 ], "y_axis": [ -0.471, 0.138, -0.871 ], "z_axis": [ 0.697, 0.663, -0.272 ], "quaternion": [ 0.593, -0.647, 0.466, -0.112 ] } }, { "index": 69, "nt1": "///A/75", "nt2": "///A/110", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.771, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 67.452, "chi2": -175.947, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.770, "C1C1_dist": 12.298, "N1N9_dist": 10.997, "C6C8_dist": 12.058, "CNNC_torsion": 7.831, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N1[3.84]", "interBase_angle": 40.394, "planarity": 0.642, "simple_Shear": 0.261, "simple_Stretch": 2.824, "simple_Buckle": 40.122, "simple_Propeller": 4.677, "bp_simpleParams": [ 0.261, 2.824, -1.266, 40.122, 4.677, 14.671 ], "bp_params": [ 0.352, 2.814, -1.266, 40.267, 3.197, 13.790 ], "frame": { "rmsd": null, "origin": [ 145.168, 227.577, 216.798 ], "x_axis": [ -0.130, -0.284, -0.950 ], "y_axis": [ -0.365, -0.877, 0.312 ], "z_axis": [ -0.922, 0.387, 0.010 ], "quaternion": [ 0.028, -0.659, 0.246, 0.710 ] } }, { "index": 70, "nt1": "///A/76", "nt2": "///A/109", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.939, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.980, "chi2": -174.171, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.013, "C1C1_dist": 10.595, "N1N9_dist": 8.842, "C6C8_dist": 9.784, "CNNC_torsion": 5.005, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.87]", "interBase_angle": 4.266, "planarity": 0.132, "simple_Shear": 0.183, "simple_Stretch": -0.250, "simple_Buckle": 4.090, "simple_Propeller": -1.211, "bp_simpleParams": [ 0.183, -0.250, -0.685, 4.090, -1.211, 0.227 ], "bp_params": [ 0.180, -0.253, -0.685, 4.074, -1.266, 0.227 ], "frame": { "rmsd": null, "origin": [ 142.288, 230.995, 216.181 ], "x_axis": [ 0.063, -0.817, -0.573 ], "y_axis": [ -0.195, -0.573, 0.796 ], "z_axis": [ -0.979, 0.062, -0.195 ], "quaternion": [ 0.271, 0.677, -0.374, -0.573 ] } }, { "index": 71, "nt1": "///A/77", "nt2": "///A/108", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.335, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.307, "chi2": -164.780, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.693, "C1C1_dist": 10.654, "N1N9_dist": 8.901, "C6C8_dist": 9.828, "CNNC_torsion": 3.126, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.87],O4(carbonyl)-N6(amino)[2.96]", "interBase_angle": 3.561, "planarity": 0.097, "simple_Shear": -0.014, "simple_Stretch": -0.113, "simple_Buckle": -3.458, "simple_Propeller": 0.852, "bp_simpleParams": [ -0.014, -0.113, -0.314, -3.458, 0.852, -0.894 ], "bp_params": [ -0.013, -0.113, -0.314, -3.463, 0.830, -0.894 ], "frame": { "rmsd": null, "origin": [ 138.764, 233.039, 213.931 ], "x_axis": [ 0.030, -0.991, -0.134 ], "y_axis": [ -0.062, -0.136, 0.989 ], "z_axis": [ -0.998, -0.021, -0.065 ], "quaternion": [ 0.455, 0.555, -0.474, -0.510 ] } }, { "index": 72, "nt1": "///A/78", "nt2": "///A/107", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.008, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 60.086, "chi2": -170.971, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 44.926, "C1C1_dist": 10.540, "N1N9_dist": 8.764, "C6C8_dist": 9.616, "CNNC_torsion": 6.745, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.88],O2(carbonyl)-N2(amino)[3.14],N3(imino)-O6(carbonyl)[2.86]", "interBase_angle": 6.301, "planarity": 0.100, "simple_Shear": 1.547, "simple_Stretch": -0.264, "simple_Buckle": -0.465, "simple_Propeller": 6.284, "bp_simpleParams": [ 1.547, -0.264, -0.320, -0.465, 6.284, -4.098 ], "bp_params": [ 1.490, -0.494, -0.320, 0.490, 6.282, -4.105 ], "frame": { "rmsd": null, "origin": [ 135.473, 233.007, 211.977 ], "x_axis": [ -0.004, -0.883, 0.470 ], "y_axis": [ -0.024, 0.470, 0.882 ], "z_axis": [ -1.000, -0.008, -0.023 ], "quaternion": [ 0.601, 0.371, -0.612, -0.357 ] } }, { "index": 73, "nt1": "///A/79", "nt2": "///A/106", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.962, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.641, "chi2": -163.670, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.600, "C1C1_dist": 10.438, "N1N9_dist": 8.838, "C6C8_dist": 9.855, "CNNC_torsion": -6.168, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.68],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 8.040, "planarity": 0.121, "simple_Shear": 0.190, "simple_Stretch": -0.154, "simple_Buckle": -1.308, "simple_Propeller": -7.933, "bp_simpleParams": [ 0.190, -0.154, -0.137, -1.308, -7.933, 3.424 ], "bp_params": [ 0.188, -0.157, -0.137, -1.429, -7.912, 3.431 ], "frame": { "rmsd": null, "origin": [ 132.751, 231.074, 211.086 ], "x_axis": [ 0.179, -0.506, 0.843 ], "y_axis": [ -0.147, 0.834, 0.532 ], "z_axis": [ -0.973, -0.219, 0.075 ], "quaternion": [ 0.723, 0.260, -0.628, -0.124 ] } }, { "index": 74, "nt1": "///A/80", "nt2": "///A/105", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.356, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.692, "chi2": -164.309, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.133, "C1C1_dist": 10.536, "N1N9_dist": 8.884, "C6C8_dist": 9.878, "CNNC_torsion": 4.323, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.70]", "interBase_angle": 4.750, "planarity": 0.071, "simple_Shear": -0.206, "simple_Stretch": -0.141, "simple_Buckle": -3.644, "simple_Propeller": 3.047, "bp_simpleParams": [ -0.206, -0.141, -0.306, -3.644, 3.047, 2.263 ], "bp_params": [ -0.203, -0.145, -0.306, -3.694, 2.986, 2.263 ], "frame": { "rmsd": null, "origin": [ 130.123, 228.351, 211.206 ], "x_axis": [ 0.311, -0.025, 0.950 ], "y_axis": [ -0.247, 0.963, 0.106 ], "z_axis": [ -0.918, -0.267, 0.293 ], "quaternion": [ 0.801, 0.117, -0.583, 0.069 ] } }, { "index": 75, "nt1": "///A/80", "nt2": "///A/337", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -178.356, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 87.793, "chi2": 110.759, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 28.956, "C1C1_dist": 8.613, "N1N9_dist": 7.589, "C6C8_dist": 7.517, "CNNC_torsion": 173.703, "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[3.05]", "interBase_angle": 10.936, "planarity": 0.179, "simple_Shear": 8.668, "simple_Stretch": 4.944, "simple_Buckle": 1.137, "simple_Propeller": -10.876, "bp_simpleParams": [ 8.668, 4.944, 0.452, 1.137, -10.876, -44.736 ], "bp_params": [ 7.165, -6.946, 0.452, -10.129, -4.122, -44.605 ], "frame": { "rmsd": null, "origin": [ 128.113, 230.075, 206.896 ], "x_axis": [ 0.253, 0.379, 0.890 ], "y_axis": [ -0.411, 0.875, -0.255 ], "z_axis": [ -0.876, -0.302, 0.377 ], "quaternion": [ 0.791, 0.015, -0.558, 0.250 ] } }, { "index": 76, "nt1": "///A/81", "nt2": "///A/104", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -153.324, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.129, "chi2": 179.420, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.248, "C1C1_dist": 10.574, "N1N9_dist": 8.824, "C6C8_dist": 9.796, "CNNC_torsion": -0.735, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 9.817, "planarity": 0.236, "simple_Shear": -0.183, "simple_Stretch": -0.254, "simple_Buckle": -2.973, "simple_Propeller": -9.356, "bp_simpleParams": [ -0.183, -0.254, -0.953, -2.973, -9.356, 3.674 ], "bp_params": [ -0.180, -0.257, -0.953, -2.851, -9.393, 3.685 ], "frame": { "rmsd": null, "origin": [ 127.750, 226.025, 212.727 ], "x_axis": [ 0.233, 0.617, 0.752 ], "y_axis": [ -0.480, 0.745, -0.463 ], "z_axis": [ -0.846, -0.253, 0.470 ], "quaternion": [ 0.782, -0.067, -0.511, 0.350 ] } }, { "index": 77, "nt1": "///A/82", "nt2": "///A/103", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "t.H", "DSSR": "t.-M", "intra_chain": true, "chi1": -153.264, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 85.534, "chi2": -174.921, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 6.942, "C1C1_dist": 11.365, "N1N9_dist": 9.866, "C6C8_dist": 10.295, "CNNC_torsion": 129.889, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O4(carbonyl)[2.29]", "interBase_angle": 15.215, "planarity": 0.246, "simple_Shear": 6.893, "simple_Stretch": 3.146, "simple_Buckle": 8.977, "simple_Propeller": -12.285, "bp_simpleParams": [ 6.893, 3.146, -0.790, 8.977, -12.285, -14.526 ], "bp_params": [ 7.131, -2.560, -0.790, -2.163, -15.061, -14.648 ], "frame": { "rmsd": null, "origin": [ 125.198, 223.758, 214.904 ], "x_axis": [ -0.322, 0.946, 0.047 ], "y_axis": [ -0.488, -0.123, -0.864 ], "z_axis": [ -0.811, -0.301, 0.501 ], "quaternion": [ 0.514, -0.274, -0.417, 0.698 ] } }, { "index": 78, "nt1": "///A/83", "nt2": "///A/102", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -90.686, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 83.661, "chi2": 172.793, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 26.280, "C1C1_dist": 10.005, "N1N9_dist": 8.750, "C6C8_dist": 8.640, "CNNC_torsion": -145.470, "hbonds_num": 3, "hbonds_desc": "N1(imino)-OP2[3.15],N2(amino)-OP2[2.24],N2(amino)-N7[3.10]", "interBase_angle": 24.267, "planarity": 0.365, "simple_Shear": 8.103, "simple_Stretch": 5.155, "simple_Buckle": 11.037, "simple_Propeller": 21.612, "bp_simpleParams": [ 8.103, 5.155, 0.724, 11.037, 21.612, -48.013 ], "bp_params": [ 7.912, -5.444, 0.724, 24.212, -1.626, -47.067 ], "frame": { "rmsd": null, "origin": [ 123.231, 223.048, 217.649 ], "x_axis": [ -0.506, 0.653, -0.564 ], "y_axis": [ -0.467, -0.757, -0.458 ], "z_axis": [ -0.725, 0.032, 0.688 ], "quaternion": [ 0.326, -0.375, -0.124, 0.859 ] } }, { "index": 79, "nt1": "///A/84", "nt2": "///A/101", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -114.258, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 6.339, "chi2": -178.222, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 94.059, "C1C1_dist": 9.524, "N1N9_dist": 8.281, "C6C8_dist": 8.679, "CNNC_torsion": -140.499, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.73],N6(amino)-O2'(hydroxyl)[2.72],N6(amino)-N3[2.94]", "interBase_angle": 4.199, "planarity": 0.148, "simple_Shear": -7.489, "simple_Stretch": 2.314, "simple_Buckle": 3.431, "simple_Propeller": -2.420, "bp_simpleParams": [ -7.489, 2.314, 0.688, 3.431, -2.420, -6.578 ], "bp_params": [ -6.604, -4.223, 0.688, 4.064, 1.057, -6.575 ], "frame": { "rmsd": null, "origin": [ 119.671, 224.599, 219.805 ], "x_axis": [ -0.452, 0.867, -0.211 ], "y_axis": [ -0.615, -0.474, -0.630 ], "z_axis": [ -0.646, -0.154, 0.747 ], "quaternion": [ 0.453, -0.262, -0.240, 0.818 ] } }, { "index": 80, "nt1": "///A/85", "nt2": "///A/97", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.147, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.610, "chi2": -153.529, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.626, "C1C1_dist": 10.584, "N1N9_dist": 8.877, "C6C8_dist": 9.822, "CNNC_torsion": 7.001, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 7.041, "planarity": 0.124, "simple_Shear": -0.164, "simple_Stretch": -0.199, "simple_Buckle": -5.316, "simple_Propeller": 4.617, "bp_simpleParams": [ -0.164, -0.199, -0.606, -5.316, 4.617, -0.018 ], "bp_params": [ -0.161, -0.201, -0.606, -5.377, 4.546, -0.018 ], "frame": { "rmsd": null, "origin": [ 124.752, 216.073, 226.401 ], "x_axis": [ -0.319, -0.647, 0.693 ], "y_axis": [ -0.522, -0.490, -0.698 ], "z_axis": [ 0.791, -0.584, -0.181 ], "quaternion": [ -0.049, 0.582, -0.502, 0.638 ] } }, { "index": 81, "nt1": "///A/85", "nt2": "///A/102", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tS.", "DSSR": "tm+.", "intra_chain": true, "chi1": -163.147, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 96.143, "chi2": 172.793, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.924, "C1C1_dist": 8.197, "N1N9_dist": 7.911, "C6C8_dist": 9.915, "CNNC_torsion": -165.430, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.00],N2(amino)-N3[3.85]", "interBase_angle": 49.923, "planarity": 0.601, "simple_Shear": 6.861, "simple_Stretch": 4.065, "simple_Buckle": -48.603, "simple_Propeller": 11.403, "bp_simpleParams": [ 6.861, 4.065, -2.470, -48.603, 11.403, -139.713 ], "bp_params": [ -2.325, -7.628, -2.470, 43.259, 24.919, -137.755 ], "frame": { "rmsd": null, "origin": [ 124.407, 217.373, 222.427 ], "x_axis": [ -0.468, -0.756, -0.457 ], "y_axis": [ -0.185, 0.590, -0.786 ], "z_axis": [ 0.864, -0.283, -0.416 ], "quaternion": [ 0.420, -0.299, 0.786, -0.340 ] } }, { "index": 82, "nt1": "///A/86", "nt2": "///A/96", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.118, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.580, "chi2": -176.953, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.061, "C1C1_dist": 10.730, "N1N9_dist": 8.966, "C6C8_dist": 9.880, "CNNC_torsion": 7.283, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.80],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 5.575, "planarity": 0.119, "simple_Shear": 0.172, "simple_Stretch": -0.153, "simple_Buckle": 4.322, "simple_Propeller": 3.522, "bp_simpleParams": [ 0.172, -0.153, -0.594, 4.322, 3.522, -0.638 ], "bp_params": [ 0.170, -0.155, -0.594, 4.368, 3.465, -0.638 ], "frame": { "rmsd": null, "origin": [ 127.326, 214.111, 227.942 ], "x_axis": [ -0.584, -0.783, 0.213 ], "y_axis": [ -0.244, -0.081, -0.966 ], "z_axis": [ 0.774, -0.616, -0.144 ], "quaternion": [ 0.219, -0.400, 0.642, -0.616 ] } }, { "index": 83, "nt1": "///A/87", "nt2": "///A/95", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.427, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.525, "chi2": -164.942, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.982, "C1C1_dist": 10.717, "N1N9_dist": 8.870, "C6C8_dist": 9.724, "CNNC_torsion": 3.211, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.91],O4(carbonyl)-N6(amino)[2.87]", "interBase_angle": 15.619, "planarity": 0.264, "simple_Shear": -0.151, "simple_Stretch": -0.168, "simple_Buckle": 11.517, "simple_Propeller": 10.550, "bp_simpleParams": [ -0.151, -0.168, 0.581, 11.517, 10.550, -2.296 ], "bp_params": [ -0.149, -0.170, 0.581, 11.358, 10.721, -2.295 ], "frame": { "rmsd": null, "origin": [ 130.892, 211.559, 229.546 ], "x_axis": [ -0.547, -0.829, -0.118 ], "y_axis": [ -0.138, 0.228, -0.964 ], "z_axis": [ 0.826, -0.511, -0.239 ], "quaternion": [ 0.332, -0.341, 0.710, -0.520 ] } }, { "index": 84, "nt1": "///A/120", "nt2": "///A/129", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.761, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.569, "chi2": -164.447, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.009, "C1C1_dist": 10.740, "N1N9_dist": 8.882, "C6C8_dist": 9.742, "CNNC_torsion": -11.993, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.86],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.82]", "interBase_angle": 3.925, "planarity": 0.186, "simple_Shear": -0.186, "simple_Stretch": -0.296, "simple_Buckle": -0.404, "simple_Propeller": -3.904, "bp_simpleParams": [ -0.186, -0.296, 0.804, -0.404, -3.904, -3.156 ], "bp_params": [ -0.182, -0.298, 0.804, -0.351, -3.909, -3.158 ], "frame": { "rmsd": null, "origin": [ 174.812, 230.618, 222.379 ], "x_axis": [ -0.902, -0.430, -0.033 ], "y_axis": [ -0.320, 0.719, -0.616 ], "z_axis": [ 0.288, -0.546, -0.787 ], "quaternion": [ 0.087, -0.203, 0.923, -0.315 ] } }, { "index": 85, "nt1": "///A/121", "nt2": "///A/128", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.535, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.809, "chi2": -169.693, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.438, "C1C1_dist": 10.623, "N1N9_dist": 8.897, "C6C8_dist": 9.855, "CNNC_torsion": -0.832, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 5.650, "planarity": 0.144, "simple_Shear": -0.195, "simple_Stretch": -0.160, "simple_Buckle": -4.109, "simple_Propeller": 3.879, "bp_simpleParams": [ -0.195, -0.160, 0.379, -4.109, 3.879, 1.120 ], "bp_params": [ -0.193, -0.163, 0.379, -4.169, 3.814, 1.120 ], "frame": { "rmsd": null, "origin": [ 175.664, 227.377, 220.776 ], "x_axis": [ -0.923, 0.146, -0.356 ], "y_axis": [ 0.317, 0.814, -0.486 ], "z_axis": [ 0.219, -0.562, -0.798 ], "quaternion": [ 0.153, 0.123, 0.940, -0.279 ] } }, { "index": 86, "nt1": "///A/122", "nt2": "///A/127", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.134, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.358, "chi2": -153.166, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.499, "C1C1_dist": 10.539, "N1N9_dist": 8.890, "C6C8_dist": 9.856, "CNNC_torsion": -2.829, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 10.877, "planarity": 0.118, "simple_Shear": -0.252, "simple_Stretch": -0.127, "simple_Buckle": -9.413, "simple_Propeller": -5.449, "bp_simpleParams": [ -0.252, -0.127, -0.211, -9.413, -5.449, 1.539 ], "bp_params": [ -0.249, -0.132, -0.211, -9.312, -5.619, 1.536 ], "frame": { "rmsd": null, "origin": [ 174.824, 224.137, 218.903 ], "x_axis": [ -0.675, 0.604, -0.424 ], "y_axis": [ 0.737, 0.572, -0.360 ], "z_axis": [ 0.025, -0.556, -0.831 ], "quaternion": [ 0.128, 0.382, 0.877, -0.261 ] } }, { "index": 87, "nt1": "///A/130", "nt2": "///A/149", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 179.684, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.269, "chi2": -160.566, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.985, "C1C1_dist": 10.814, "N1N9_dist": 9.023, "C6C8_dist": 9.914, "CNNC_torsion": -1.429, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.00],N1-N3(imino)[2.95]", "interBase_angle": 3.196, "planarity": 0.067, "simple_Shear": 0.002, "simple_Stretch": -0.029, "simple_Buckle": 0.752, "simple_Propeller": 3.107, "bp_simpleParams": [ 0.002, -0.029, 0.307, 0.752, 3.107, -1.845 ], "bp_params": [ 0.002, -0.029, 0.307, 0.769, 3.103, -1.846 ], "frame": { "rmsd": null, "origin": [ 173.959, 235.867, 222.240 ], "x_axis": [ -0.909, -0.396, 0.127 ], "y_axis": [ 0.382, -0.675, 0.632 ], "z_axis": [ -0.164, 0.623, 0.765 ], "quaternion": [ -0.213, -0.010, 0.343, 0.915 ] } }, { "index": 88, "nt1": "///A/131", "nt2": "///A/148", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.877, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.315, "chi2": -173.513, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.853, "C1C1_dist": 10.562, "N1N9_dist": 8.852, "C6C8_dist": 9.813, "CNNC_torsion": -6.207, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 4.373, "planarity": 0.194, "simple_Shear": 0.198, "simple_Stretch": -0.220, "simple_Buckle": 4.004, "simple_Propeller": 1.758, "bp_simpleParams": [ 0.198, -0.220, 0.661, 4.004, 1.758, 1.802 ], "bp_params": [ 0.195, -0.223, 0.661, 4.031, 1.695, 1.801 ], "frame": { "rmsd": null, "origin": [ 172.277, 238.652, 223.784 ], "x_axis": [ -0.523, -0.728, 0.444 ], "y_axis": [ 0.840, -0.352, 0.412 ], "z_axis": [ -0.143, 0.588, 0.796 ], "quaternion": [ -0.480, 0.092, 0.306, 0.817 ] } }, { "index": 89, "nt1": "///A/132", "nt2": "///A/147", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.212, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.230, "chi2": 179.209, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.921, "C1C1_dist": 10.712, "N1N9_dist": 8.921, "C6C8_dist": 9.836, "CNNC_torsion": -5.376, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 4.338, "planarity": 0.059, "simple_Shear": 0.177, "simple_Stretch": -0.175, "simple_Buckle": -0.555, "simple_Propeller": -4.303, "bp_simpleParams": [ 0.177, -0.175, 0.102, -0.555, -4.303, -0.635 ], "bp_params": [ 0.175, -0.178, 0.102, -0.612, -4.295, -0.636 ], "frame": { "rmsd": null, "origin": [ 170.094, 240.515, 225.765 ], "x_axis": [ 0.134, -0.877, 0.462 ], "y_axis": [ 0.948, 0.249, 0.197 ], "z_axis": [ -0.288, 0.411, 0.865 ], "quaternion": [ 0.750, -0.071, -0.250, -0.609 ] } }, { "index": 90, "nt1": "///A/133", "nt2": "///A/146", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 173.385, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.687, "chi2": -157.597, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.013, "C1C1_dist": 10.867, "N1N9_dist": 8.985, "C6C8_dist": 9.834, "CNNC_torsion": 1.878, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.90],N1-N3(imino)[2.89]", "interBase_angle": 8.101, "planarity": 0.101, "simple_Shear": 0.056, "simple_Stretch": -0.099, "simple_Buckle": 1.423, "simple_Propeller": 7.975, "bp_simpleParams": [ 0.056, -0.099, 0.273, 1.423, 7.975, -3.373 ], "bp_params": [ 0.055, -0.100, 0.273, 1.510, 7.959, -3.381 ], "frame": { "rmsd": null, "origin": [ 167.570, 241.329, 228.030 ], "x_axis": [ 0.595, -0.732, 0.331 ], "y_axis": [ 0.785, 0.617, -0.046 ], "z_axis": [ -0.171, 0.287, 0.942 ], "quaternion": [ 0.888, -0.094, -0.141, -0.427 ] } }, { "index": 91, "nt1": "///A/134", "nt2": "///A/145", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.377, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.969, "chi2": 171.934, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.991, "C1C1_dist": 10.656, "N1N9_dist": 8.882, "C6C8_dist": 9.813, "CNNC_torsion": 3.258, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 9.288, "planarity": 0.148, "simple_Shear": 0.267, "simple_Stretch": -0.181, "simple_Buckle": 6.512, "simple_Propeller": 6.623, "bp_simpleParams": [ 0.267, -0.181, 0.054, 6.512, 6.623, 0.678 ], "bp_params": [ 0.263, -0.187, 0.054, 6.664, 6.470, 0.678 ], "frame": { "rmsd": null, "origin": [ 166.482, 240.232, 231.407 ], "x_axis": [ 0.960, -0.222, 0.173 ], "y_axis": [ 0.254, 0.948, -0.193 ], "z_axis": [ -0.121, 0.229, 0.966 ], "quaternion": [ 0.984, -0.107, -0.075, -0.121 ] } }, { "index": 92, "nt1": "///A/135", "nt2": "///A/144", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.165, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.838, "chi2": -171.752, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.942, "C1C1_dist": 10.287, "N1N9_dist": 8.722, "C6C8_dist": 9.761, "CNNC_torsion": 9.636, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.77],O4(carbonyl)-N6(amino)[3.01]", "interBase_angle": 7.214, "planarity": 0.136, "simple_Shear": 0.023, "simple_Stretch": -0.191, "simple_Buckle": 5.838, "simple_Propeller": 4.237, "bp_simpleParams": [ 0.023, -0.191, -0.649, 5.838, 4.237, 3.554 ], "bp_params": [ 0.023, -0.191, -0.649, 5.831, 4.247, 3.551 ], "frame": { "rmsd": null, "origin": [ 166.876, 238.847, 234.966 ], "x_axis": [ 0.952, 0.305, 0.028 ], "y_axis": [ -0.297, 0.943, -0.151 ], "z_axis": [ -0.073, 0.136, 0.988 ], "quaternion": [ 0.985, -0.073, -0.026, 0.153 ] } }, { "index": 93, "nt1": "///A/136", "nt2": "///A/143", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.949, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.077, "chi2": 179.119, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.541, "C1C1_dist": 10.585, "N1N9_dist": 8.865, "C6C8_dist": 9.831, "CNNC_torsion": 9.743, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 15.621, "planarity": 0.186, "simple_Shear": 0.276, "simple_Stretch": -0.173, "simple_Buckle": -5.465, "simple_Propeller": 14.634, "bp_simpleParams": [ 0.276, -0.173, 0.213, -5.465, 14.634, 2.347 ], "bp_params": [ 0.272, -0.179, 0.213, -5.150, 14.748, 2.364 ], "frame": { "rmsd": null, "origin": [ 167.891, 237.354, 238.918 ], "x_axis": [ 0.652, 0.734, -0.187 ], "y_axis": [ -0.758, 0.625, -0.187 ], "z_axis": [ -0.021, 0.264, 0.964 ], "quaternion": [ 0.900, -0.125, 0.046, 0.414 ] } }, { "index": 94, "nt1": "///A/137", "nt2": "///A/142", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -173.948, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 87.599, "chi2": 176.919, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 20.967, "C1C1_dist": 11.291, "N1N9_dist": 9.913, "C6C8_dist": 10.582, "CNNC_torsion": 41.207, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O6(carbonyl)[2.24]", "interBase_angle": 26.964, "planarity": 0.342, "simple_Shear": 6.042, "simple_Stretch": 2.746, "simple_Buckle": -17.767, "simple_Propeller": 20.282, "bp_simpleParams": [ 6.042, 2.746, 0.108, -17.767, 20.282, 3.653 ], "bp_params": [ 6.463, -1.506, 0.108, -1.689, 26.911, 3.756 ], "frame": { "rmsd": null, "origin": [ 169.542, 237.496, 242.007 ], "x_axis": [ -0.207, 0.925, -0.320 ], "y_axis": [ -0.977, -0.176, 0.122 ], "z_axis": [ 0.057, 0.338, 0.940 ], "quaternion": [ 0.624, -0.086, 0.151, 0.762 ] } }, { "index": 95, "nt1": "///A/139", "nt2": "///A/1639", "bp": "A+G", "name": "--", "Saenger": "10-X", "LW": ".WS", "DSSR": ".W+m", "intra_chain": true, "chi1": 175.605, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 34.737, "chi2": -166.787, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 110.698, "C1C1_dist": 10.806, "N1N9_dist": 10.246, "C6C8_dist": 11.487, "CNNC_torsion": 97.991, "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.76]", "interBase_angle": 60.160, "planarity": 0.754, "simple_Shear": 1.836, "simple_Stretch": 5.670, "simple_Buckle": -39.281, "simple_Propeller": -45.565, "bp_simpleParams": [ 1.836, 5.670, 0.920, -39.281, -45.565, 77.507 ], "bp_params": [ -4.584, 3.809, 0.920, 28.146, -53.170, 82.158 ], "frame": { "rmsd": null, "origin": [ 178.880, 235.595, 252.602 ], "x_axis": [ 0.397, -0.767, 0.504 ], "y_axis": [ -0.844, -0.089, 0.529 ], "z_axis": [ -0.361, -0.635, -0.683 ], "quaternion": [ 0.395, 0.736, -0.547, 0.048 ] } }, { "index": 96, "nt1": "///A/152", "nt2": "///A/177", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.930, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.364, "chi2": -170.866, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.005, "C1C1_dist": 10.603, "N1N9_dist": 8.857, "C6C8_dist": 9.759, "CNNC_torsion": 8.207, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.87],N3-N1(imino)[2.97],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 10.868, "planarity": 0.312, "simple_Shear": 0.169, "simple_Stretch": -0.268, "simple_Buckle": -10.455, "simple_Propeller": 2.969, "bp_simpleParams": [ 0.169, -0.268, -0.950, -10.455, 2.969, -1.730 ], "bp_params": [ 0.166, -0.270, -0.950, -10.421, 3.084, -1.723 ], "frame": { "rmsd": null, "origin": [ 172.683, 242.610, 202.246 ], "x_axis": [ -0.073, 0.316, 0.946 ], "y_axis": [ 0.961, -0.231, 0.151 ], "z_axis": [ 0.266, 0.920, -0.286 ], "quaternion": [ -0.320, 0.601, 0.531, 0.504 ] } }, { "index": 97, "nt1": "///A/152", "nt2": "///A/178", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.930, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 75.702, "chi2": -116.297, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 81.641, "C1C1_dist": 8.301, "N1N9_dist": 7.725, "C6C8_dist": 9.466, "CNNC_torsion": -9.668, "hbonds_num": 1, "hbonds_desc": "N3*N1[3.00]", "interBase_angle": 30.963, "planarity": 0.363, "simple_Shear": -0.205, "simple_Stretch": 0.462, "simple_Buckle": -30.805, "simple_Propeller": 3.126, "bp_simpleParams": [ -0.205, 0.462, 1.724, -30.805, 3.126, 47.045 ], "bp_params": [ -0.222, 0.454, 1.724, -30.904, 1.915, 45.526 ], "frame": { "rmsd": null, "origin": [ 172.062, 241.473, 202.766 ], "x_axis": [ -0.445, 0.408, 0.798 ], "y_axis": [ 0.887, 0.075, 0.456 ], "z_axis": [ 0.126, 0.910, -0.395 ], "quaternion": [ -0.243, 0.468, 0.692, 0.494 ] } }, { "index": 98, "nt1": "///A/153", "nt2": "///A/175", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.667, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.566, "chi2": -161.695, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.288, "C1C1_dist": 10.806, "N1N9_dist": 8.948, "C6C8_dist": 9.830, "CNNC_torsion": -1.060, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.88]", "interBase_angle": 1.418, "planarity": 0.040, "simple_Shear": 0.172, "simple_Stretch": -0.175, "simple_Buckle": -0.185, "simple_Propeller": -1.406, "bp_simpleParams": [ 0.172, -0.175, -0.139, -0.185, -1.406, -1.759 ], "bp_params": [ 0.170, -0.177, -0.139, -0.202, -1.404, -1.759 ], "frame": { "rmsd": null, "origin": [ 172.901, 245.890, 203.166 ], "x_axis": [ 0.537, -0.062, 0.841 ], "y_axis": [ 0.752, -0.415, -0.511 ], "z_axis": [ 0.381, 0.908, -0.176 ], "quaternion": [ -0.486, 0.729, 0.236, 0.419 ] } }, { "index": 99, "nt1": "///A/154", "nt2": "///A/174", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.340, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.874, "chi2": -165.889, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.090, "C1C1_dist": 10.540, "N1N9_dist": 8.809, "C6C8_dist": 9.744, "CNNC_torsion": -11.386, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.93],N1-N3(imino)[2.82]", "interBase_angle": 3.773, "planarity": 0.174, "simple_Shear": 0.043, "simple_Stretch": -0.230, "simple_Buckle": 0.253, "simple_Propeller": -3.764, "bp_simpleParams": [ 0.043, -0.230, 0.763, 0.253, -3.764, -0.954 ], "bp_params": [ 0.041, -0.231, 0.763, 0.220, -3.767, -0.954 ], "frame": { "rmsd": null, "origin": [ 172.897, 249.323, 203.764 ], "x_axis": [ 0.660, -0.556, 0.506 ], "y_axis": [ 0.310, -0.411, -0.857 ], "z_axis": [ 0.684, 0.722, -0.099 ], "quaternion": [ 0.536, -0.737, 0.083, -0.404 ] } }, { "index": 100, "nt1": "///A/155", "nt2": "///A/173", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.850, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.375, "chi2": -171.928, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.613, "C1C1_dist": 10.644, "N1N9_dist": 8.910, "C6C8_dist": 9.833, "CNNC_torsion": -4.414, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.86],O4(carbonyl)-N6(amino)[2.92]", "interBase_angle": 0.628, "planarity": 0.082, "simple_Shear": -0.075, "simple_Stretch": -0.122, "simple_Buckle": -0.151, "simple_Propeller": -0.610, "bp_simpleParams": [ -0.075, -0.122, 0.382, -0.151, -0.610, -1.353 ], "bp_params": [ -0.074, -0.123, 0.382, -0.145, -0.611, -1.349 ], "frame": { "rmsd": null, "origin": [ 174.964, 252.110, 205.285 ], "x_axis": [ 0.717, -0.696, -0.024 ], "y_axis": [ -0.072, -0.040, -0.997 ], "z_axis": [ 0.693, 0.716, -0.079 ], "quaternion": [ 0.632, -0.677, 0.284, -0.247 ] } }, { "index": 101, "nt1": "///A/156", "nt2": "///A/172", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 173.699, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.536, "chi2": -165.995, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.183, "C1C1_dist": 10.560, "N1N9_dist": 8.840, "C6C8_dist": 9.807, "CNNC_torsion": 2.167, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.96],N1-N3(imino)[2.81]", "interBase_angle": 4.734, "planarity": 0.067, "simple_Shear": -0.000, "simple_Stretch": -0.137, "simple_Buckle": -0.455, "simple_Propeller": 4.712, "bp_simpleParams": [ -0.000, -0.137, 0.167, -0.455, 4.712, 1.262 ], "bp_params": [ -0.001, -0.137, 0.167, -0.429, 4.715, 1.263 ], "frame": { "rmsd": null, "origin": [ 177.797, 254.032, 206.733 ], "x_axis": [ 0.583, -0.631, -0.512 ], "y_axis": [ -0.404, 0.322, -0.856 ], "z_axis": [ 0.705, 0.706, -0.067 ], "quaternion": [ 0.678, -0.576, 0.449, -0.084 ] } }, { "index": 102, "nt1": "///A/157", "nt2": "///A/171", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.223, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.971, "chi2": -174.419, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.476, "C1C1_dist": 10.113, "N1N9_dist": 8.605, "C6C8_dist": 9.727, "CNNC_torsion": 2.263, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.72],O4(carbonyl)-N6(amino)[3.06]", "interBase_angle": 6.430, "planarity": 0.109, "simple_Shear": 0.063, "simple_Stretch": -0.190, "simple_Buckle": 3.229, "simple_Propeller": 5.560, "bp_simpleParams": [ 0.063, -0.190, 0.263, 3.229, 5.560, 7.690 ], "bp_params": [ 0.063, -0.190, 0.263, 3.237, 5.556, 7.696 ], "frame": { "rmsd": null, "origin": [ 181.358, 255.020, 207.553 ], "x_axis": [ 0.247, -0.392, -0.886 ], "y_axis": [ -0.652, 0.609, -0.451 ], "z_axis": [ 0.717, 0.690, -0.105 ], "quaternion": [ 0.662, -0.431, 0.606, 0.098 ] } }, { "index": 103, "nt1": "///A/158", "nt2": "///A/170", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 177.191, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.100, "chi2": -170.551, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.580, "C1C1_dist": 10.751, "N1N9_dist": 8.928, "C6C8_dist": 9.849, "CNNC_torsion": 1.023, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 4.484, "planarity": 0.102, "simple_Shear": 0.169, "simple_Stretch": -0.175, "simple_Buckle": 3.163, "simple_Propeller": -3.178, "bp_simpleParams": [ 0.169, -0.175, -0.492, 3.163, -3.178, 0.147 ], "bp_params": [ 0.167, -0.177, -0.492, 3.124, -3.216, 0.147 ], "frame": { "rmsd": null, "origin": [ 184.752, 255.608, 207.449 ], "x_axis": [ -0.211, -0.092, -0.973 ], "y_axis": [ -0.527, 0.849, 0.034 ], "z_axis": [ 0.824, 0.520, -0.227 ], "quaternion": [ 0.594, -0.204, 0.756, 0.183 ] } }, { "index": 104, "nt1": "///A/159", "nt2": "///A/169", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 177.110, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.733, "chi2": -175.009, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.348, "C1C1_dist": 10.094, "N1N9_dist": 8.264, "C6C8_dist": 9.112, "CNNC_torsion": 2.865, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.35],N3(imino)*N1(imino)[2.44],O4(carbonyl)*O6(carbonyl)[2.24]", "unusual_base2base_hbonds": 2, "interBase_angle": 2.737, "planarity": 0.038, "simple_Shear": 0.605, "simple_Stretch": -0.858, "simple_Buckle": -0.282, "simple_Propeller": 2.722, "bp_simpleParams": [ 0.605, -0.858, 0.051, -0.282, 2.722, -5.057 ], "bp_params": [ 0.555, -0.891, 0.051, -0.127, 2.734, -5.059 ], "frame": { "rmsd": null, "origin": [ 188.485, 255.325, 205.743 ], "x_axis": [ -0.509, 0.296, -0.809 ], "y_axis": [ -0.369, 0.774, 0.515 ], "z_axis": [ 0.778, 0.560, -0.284 ], "quaternion": [ 0.495, -0.023, 0.801, 0.336 ] } }, { "index": 105, "nt1": "///A/160", "nt2": "///A/168", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": 179.012, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 97.616, "chi2": -165.984, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 7.308, "C1C1_dist": 9.130, "N1N9_dist": 7.990, "C6C8_dist": 8.378, "CNNC_torsion": -130.137, "hbonds_num": 4, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[2.28],N2(amino)-OP2[3.06],N2(amino)-N7[2.84],N3-N6(amino)[3.20]", "interBase_angle": 3.130, "planarity": 0.190, "simple_Shear": 7.793, "simple_Stretch": 2.350, "simple_Buckle": 3.129, "simple_Propeller": 0.068, "bp_simpleParams": [ 7.793, 2.350, 1.000, 3.129, 0.068, -5.851 ], "bp_params": [ 6.604, -4.758, 1.000, 1.957, -2.443, -5.852 ], "frame": { "rmsd": null, "origin": [ 191.059, 256.543, 204.007 ], "x_axis": [ -0.672, 0.740, 0.041 ], "y_axis": [ 0.249, 0.173, 0.953 ], "z_axis": [ 0.698, 0.650, -0.301 ], "quaternion": [ 0.224, 0.338, 0.732, 0.547 ] } }, { "index": 106, "nt1": "///A/161", "nt2": "///A/167", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -159.524, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 18.768, "chi2": -167.181, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 26.377, "C1C1_dist": 9.820, "N1N9_dist": 7.191, "C6C8_dist": 6.105, "CNNC_torsion": 166.647, "hbonds_num": 3, "hbonds_desc": "OP2*O4(carbonyl)[2.83],N7-N3(imino)[2.79],N6(amino)-O2(carbonyl)[2.95]", "interBase_angle": 14.561, "planarity": 0.247, "simple_Shear": -3.845, "simple_Stretch": 0.904, "simple_Buckle": -2.653, "simple_Propeller": -14.318, "bp_simpleParams": [ -3.845, 0.904, -1.449, -2.653, -14.318, -98.686 ], "bp_params": [ -3.597, -1.632, -1.449, 6.654, -12.952, -98.953 ], "frame": { "rmsd": null, "origin": [ 197.425, 253.906, 203.020 ], "x_axis": [ -0.628, 0.777, 0.049 ], "y_axis": [ 0.312, 0.193, 0.930 ], "z_axis": [ 0.713, 0.599, -0.364 ], "quaternion": [ 0.225, 0.368, 0.739, 0.517 ] } }, { "index": 107, "nt1": "///A/162", "nt2": "///A/166", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -164.795, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 19.076, "chi2": -172.596, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 28.858, "C1C1_dist": 12.118, "N1N9_dist": 9.512, "C6C8_dist": 8.278, "CNNC_torsion": 166.821, "hbonds_num": 2, "hbonds_desc": "N7-N6(amino)[3.55],N6(amino)-N1[3.48]", "interBase_angle": 27.865, "planarity": 0.378, "simple_Shear": -3.726, "simple_Stretch": 3.135, "simple_Buckle": -11.751, "simple_Propeller": -25.266, "bp_simpleParams": [ -3.726, 3.135, -1.748, -11.751, -25.266, -96.821 ], "bp_params": [ -4.859, 0.321, -1.748, 5.617, -27.293, -98.378 ], "frame": { "rmsd": null, "origin": [ 199.278, 255.922, 201.010 ], "x_axis": [ -0.226, 0.823, 0.521 ], "y_axis": [ 0.613, -0.296, 0.733 ], "z_axis": [ 0.757, 0.485, -0.438 ], "quaternion": [ 0.101, 0.614, 0.585, 0.521 ] } }, { "index": 108, "nt1": "///A/162", "nt2": "///A/167", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -164.795, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 12.117, "chi2": -167.181, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.163, "C1C1_dist": 11.107, "N1N9_dist": 8.794, "C6C8_dist": 8.577, "CNNC_torsion": -134.139, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.97]", "interBase_angle": 29.045, "planarity": 0.531, "simple_Shear": -4.246, "simple_Stretch": 0.687, "simple_Buckle": -5.492, "simple_Propeller": -28.522, "bp_simpleParams": [ -4.246, 0.687, 1.896, -5.492, -28.522, -61.411 ], "bp_params": [ -3.992, -1.600, 1.896, 10.093, -27.235, -62.663 ], "frame": { "rmsd": null, "origin": [ 198.166, 254.673, 201.923 ], "x_axis": [ -0.420, 0.861, 0.287 ], "y_axis": [ 0.540, -0.018, 0.842 ], "z_axis": [ 0.730, 0.508, -0.457 ], "quaternion": [ 0.162, 0.514, 0.682, 0.495 ] } }, { "index": 109, "nt1": "///A/162", "nt2": "///A/2246", "bp": "A+G", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -164.795, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 62.297, "chi2": -164.505, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 89.755, "C1C1_dist": 8.009, "N1N9_dist": 7.826, "C6C8_dist": 10.182, "CNNC_torsion": 176.148, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N2(amino)[3.57],N1-O2'(hydroxyl)[3.27],N3-N2(amino)[3.59]", "interBase_angle": 11.591, "planarity": 0.284, "simple_Shear": 7.302, "simple_Stretch": 4.012, "simple_Buckle": -5.983, "simple_Propeller": -9.928, "bp_simpleParams": [ 7.302, 4.012, -1.212, -5.983, -9.928, 152.660 ], "bp_params": [ 3.057, 7.751, -1.212, 1.744, -11.459, 152.788 ], "frame": { "rmsd": null, "origin": [ 202.218, 250.637, 201.281 ], "x_axis": [ -0.576, -0.336, -0.745 ], "y_axis": [ -0.426, 0.901, -0.077 ], "z_axis": [ 0.698, 0.273, -0.662 ], "quaternion": [ 0.407, -0.215, 0.886, 0.055 ] } }, { "index": 110, "nt1": "///A/185", "nt2": "///A/218", "bp": "A-G", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.429, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 44.107, "chi2": -140.409, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 45.390, "C1C1_dist": 12.842, "N1N9_dist": 10.762, "C6C8_dist": 11.124, "CNNC_torsion": -1.091, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O6(carbonyl)[2.82],N1-N1(imino)[2.85]", "interBase_angle": 7.584, "planarity": 0.111, "simple_Shear": -0.213, "simple_Stretch": 1.448, "simple_Buckle": -7.317, "simple_Propeller": 1.992, "bp_simpleParams": [ -0.213, 1.448, 0.158, -7.317, 1.992, -18.901 ], "bp_params": [ -0.247, 1.442, 0.158, -7.362, 1.818, -18.865 ], "frame": { "rmsd": null, "origin": [ 156.102, 224.459, 185.271 ], "x_axis": [ 0.639, 0.190, 0.745 ], "y_axis": [ 0.268, -0.963, 0.015 ], "z_axis": [ 0.721, 0.190, -0.666 ], "quaternion": [ -0.048, 0.904, 0.127, 0.406 ] } }, { "index": 111, "nt1": "///A/186", "nt2": "///A/217", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.844, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.549, "chi2": -141.733, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.147, "C1C1_dist": 10.487, "N1N9_dist": 8.790, "C6C8_dist": 9.746, "CNNC_torsion": -10.089, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.70],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 5.853, "planarity": 0.233, "simple_Shear": 0.213, "simple_Stretch": -0.321, "simple_Buckle": -5.089, "simple_Propeller": 2.891, "bp_simpleParams": [ 0.213, -0.321, 1.137, -5.089, 2.891, 2.549 ], "bp_params": [ 0.208, -0.324, 1.137, -5.043, 2.971, 2.548 ], "frame": { "rmsd": null, "origin": [ 159.279, 226.090, 183.962 ], "x_axis": [ 0.631, -0.347, 0.694 ], "y_axis": [ -0.215, -0.938, -0.272 ], "z_axis": [ 0.746, 0.022, -0.666 ], "quaternion": [ -0.082, 0.899, -0.156, 0.400 ] } }, { "index": 112, "nt1": "///A/187", "nt2": "///A/215", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.665, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.151, "chi2": -178.916, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.076, "C1C1_dist": 10.677, "N1N9_dist": 8.888, "C6C8_dist": 9.796, "CNNC_torsion": -10.062, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 3.497, "planarity": 0.144, "simple_Shear": 0.193, "simple_Stretch": -0.237, "simple_Buckle": -0.279, "simple_Propeller": -3.486, "bp_simpleParams": [ 0.193, -0.237, 0.635, -0.279, -3.486, -0.979 ], "bp_params": [ 0.189, -0.239, 0.635, -0.329, -3.482, -0.980 ], "frame": { "rmsd": null, "origin": [ 165.591, 226.367, 182.819 ], "x_axis": [ 0.139, -0.890, 0.434 ], "y_axis": [ -0.741, -0.384, -0.550 ], "z_axis": [ 0.657, -0.245, -0.713 ], "quaternion": [ -0.102, 0.748, -0.546, 0.365 ] } }, { "index": 113, "nt1": "///A/188", "nt2": "///A/214", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.634, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.231, "chi2": -161.864, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.947, "C1C1_dist": 10.723, "N1N9_dist": 8.914, "C6C8_dist": 9.808, "CNNC_torsion": -11.807, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 6.734, "planarity": 0.162, "simple_Shear": 0.163, "simple_Stretch": -0.224, "simple_Buckle": 1.752, "simple_Propeller": -6.503, "bp_simpleParams": [ 0.163, -0.224, 0.601, 1.752, -6.503, -1.896 ], "bp_params": [ 0.161, -0.226, 0.601, 1.674, -6.523, -1.899 ], "frame": { "rmsd": null, "origin": [ 169.047, 226.058, 181.935 ], "x_axis": [ -0.369, -0.912, 0.181 ], "y_axis": [ -0.682, 0.134, -0.719 ], "z_axis": [ 0.631, -0.389, -0.671 ], "quaternion": [ 0.153, -0.540, 0.737, -0.375 ] } }, { "index": 114, "nt1": "///A/189", "nt2": "///A/213", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.421, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.446, "chi2": -159.524, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.990, "C1C1_dist": 10.543, "N1N9_dist": 8.904, "C6C8_dist": 9.882, "CNNC_torsion": -1.360, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 8.868, "planarity": 0.127, "simple_Shear": -0.197, "simple_Stretch": -0.141, "simple_Buckle": -5.667, "simple_Propeller": -6.821, "bp_simpleParams": [ -0.197, -0.141, -0.528, -5.667, -6.821, 2.073 ], "bp_params": [ -0.195, -0.144, -0.528, -5.571, -6.899, 2.075 ], "frame": { "rmsd": null, "origin": [ 172.154, 223.719, 181.306 ], "x_axis": [ -0.762, -0.645, -0.061 ], "y_axis": [ -0.367, 0.507, -0.780 ], "z_axis": [ 0.534, -0.571, -0.623 ], "quaternion": [ 0.175, -0.298, 0.850, -0.397 ] } }, { "index": 115, "nt1": "///A/190", "nt2": "///A/212", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.271, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.788, "chi2": -163.361, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.871, "C1C1_dist": 10.652, "N1N9_dist": 8.911, "C6C8_dist": 9.847, "CNNC_torsion": 3.370, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 9.939, "planarity": 0.130, "simple_Shear": -0.181, "simple_Stretch": -0.157, "simple_Buckle": -9.845, "simple_Propeller": -1.365, "bp_simpleParams": [ -0.181, -0.157, -0.656, -9.845, -1.365, 0.519 ], "bp_params": [ -0.179, -0.160, -0.656, -9.827, -1.489, 0.518 ], "frame": { "rmsd": null, "origin": [ 174.731, 220.761, 180.393 ], "x_axis": [ -0.852, -0.232, -0.470 ], "y_axis": [ 0.111, 0.797, -0.594 ], "z_axis": [ 0.512, -0.558, -0.653 ], "quaternion": [ 0.270, -0.033, 0.908, -0.317 ] } }, { "index": 116, "nt1": "///A/191", "nt2": "///A/211", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.196, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.557, "chi2": -168.848, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.319, "C1C1_dist": 10.685, "N1N9_dist": 8.929, "C6C8_dist": 9.867, "CNNC_torsion": -0.015, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 3.417, "planarity": 0.040, "simple_Shear": -0.177, "simple_Stretch": -0.139, "simple_Buckle": -3.392, "simple_Propeller": -0.414, "bp_simpleParams": [ -0.177, -0.139, -0.113, -3.392, -0.414, 0.562 ], "bp_params": [ -0.175, -0.142, -0.113, -3.386, -0.459, 0.562 ], "frame": { "rmsd": null, "origin": [ 175.139, 217.606, 178.824 ], "x_axis": [ -0.781, 0.303, -0.546 ], "y_axis": [ 0.522, 0.797, -0.304 ], "z_axis": [ 0.343, -0.522, -0.781 ], "quaternion": [ 0.242, 0.225, 0.916, -0.226 ] } }, { "index": 117, "nt1": "///A/192", "nt2": "///A/210", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -163.889, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 98.141, "chi2": -170.825, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 8.827, "C1C1_dist": 9.727, "N1N9_dist": 8.573, "C6C8_dist": 9.040, "CNNC_torsion": 80.059, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[3.12],N2(amino)-N7[2.95],N3-N6(amino)[3.00]", "interBase_angle": 2.891, "planarity": 0.049, "simple_Shear": 7.441, "simple_Stretch": 2.611, "simple_Buckle": -2.857, "simple_Propeller": -0.439, "bp_simpleParams": [ 7.441, 2.611, -0.167, -2.857, -0.439, -2.871 ], "bp_params": [ 6.840, -3.923, -0.167, -2.200, 1.875, -2.871 ], "frame": { "rmsd": null, "origin": [ 175.572, 215.129, 176.173 ], "x_axis": [ 0.076, 0.855, -0.513 ], "y_axis": [ 0.953, 0.089, 0.290 ], "z_axis": [ 0.293, -0.510, -0.808 ], "quaternion": [ 0.299, 0.670, 0.675, -0.082 ] } }, { "index": 118, "nt1": "///A/193", "nt2": "///A/209", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": 171.027, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 21.410, "chi2": -173.773, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 27.627, "C1C1_dist": 10.012, "N1N9_dist": 7.433, "C6C8_dist": 6.404, "CNNC_torsion": -170.959, "hbonds_num": 2, "hbonds_desc": "N7-N3(imino)[3.07],N6(amino)-O2(carbonyl)[3.03]", "interBase_angle": 6.162, "planarity": 0.170, "simple_Shear": -4.090, "simple_Stretch": 1.425, "simple_Buckle": -4.802, "simple_Propeller": 3.861, "bp_simpleParams": [ -4.090, 1.425, -0.828, -4.802, 3.861, -99.601 ], "bp_params": [ -4.034, -1.575, -0.828, -6.159, -0.188, -99.519 ], "frame": { "rmsd": null, "origin": [ 175.308, 208.490, 175.588 ], "x_axis": [ -0.078, 0.891, -0.447 ], "y_axis": [ 0.984, 0.142, 0.111 ], "z_axis": [ 0.163, -0.431, -0.888 ], "quaternion": [ 0.210, 0.646, 0.726, -0.110 ] } }, { "index": 119, "nt1": "///A/194", "nt2": "///A/207", "bp": "A+A", "name": "--", "Saenger": "02-II", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": -174.777, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 12.504, "chi2": -149.758, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 17.077, "C1C1_dist": 11.559, "N1N9_dist": 8.757, "C6C8_dist": 6.965, "CNNC_torsion": -140.707, "hbonds_num": 3, "hbonds_desc": "OP2-N6(amino)[3.25],N7-N6(amino)[3.41],N6(amino)-N7[3.67]", "interBase_angle": 21.904, "planarity": 0.378, "simple_Shear": -7.724, "simple_Stretch": 0.804, "simple_Buckle": -12.028, "simple_Propeller": -18.306, "bp_simpleParams": [ -7.724, 0.804, -1.812, -12.028, -18.306, 175.467 ], "bp_params": [ 5.643, -5.334, -1.812, 20.663, 7.269, 175.401 ], "frame": { "rmsd": null, "origin": [ 176.382, 208.123, 172.203 ], "x_axis": [ -0.952, -0.279, -0.124 ], "y_axis": [ -0.219, 0.908, -0.358 ], "z_axis": [ 0.213, -0.314, -0.925 ], "quaternion": [ 0.087, -0.128, 0.973, -0.173 ] } }, { "index": 120, "nt1": "///A/195", "nt2": "///A/206", "bp": "C-A", "name": "~Sheared", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -173.586, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 9.791, "chi2": -145.779, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 103.654, "C1C1_dist": 9.024, "N1N9_dist": 8.018, "C6C8_dist": 8.503, "CNNC_torsion": 106.127, "hbonds_num": 2, "hbonds_desc": "N4(amino)-O2'(hydroxyl)[3.00],N4(amino)-N3[3.23]", "interBase_angle": 20.028, "planarity": 0.440, "simple_Shear": -7.922, "simple_Stretch": 2.283, "simple_Buckle": -18.858, "simple_Propeller": -6.744, "bp_simpleParams": [ -7.922, 2.283, -1.914, -18.858, -6.744, 4.629 ], "bp_params": [ -6.594, -4.949, -1.914, -6.022, -19.101, 4.688 ], "frame": { "rmsd": null, "origin": [ 176.262, 205.486, 169.473 ], "x_axis": [ 0.251, 0.924, -0.287 ], "y_axis": [ 0.938, -0.159, 0.309 ], "z_axis": [ 0.240, -0.347, -0.907 ], "quaternion": [ 0.216, 0.761, 0.612, -0.015 ] } }, { "index": 121, "nt1": "///A/196", "nt2": "///A/205", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.012, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 46.557, "chi2": -143.507, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 78.801, "C1C1_dist": 9.143, "N1N9_dist": 7.850, "C6C8_dist": 9.185, "CNNC_torsion": -6.544, "hbonds_num": 2, "hbonds_desc": "N3(imino)-O2(carbonyl)[3.54],O4(carbonyl)-N3(imino)[3.54]", "interBase_angle": 13.009, "planarity": 0.186, "simple_Shear": -2.829, "simple_Stretch": -0.409, "simple_Buckle": -11.575, "simple_Propeller": -5.937, "bp_simpleParams": [ -2.829, -0.409, -0.665, -11.575, -5.937, 15.425 ], "bp_params": [ -2.600, -1.186, -0.665, -9.455, -8.936, 15.419 ], "frame": { "rmsd": null, "origin": [ 178.344, 204.523, 165.710 ], "x_axis": [ 0.882, 0.447, 0.149 ], "y_axis": [ 0.316, -0.796, 0.516 ], "z_axis": [ 0.350, -0.408, -0.843 ], "quaternion": [ 0.246, 0.938, 0.204, 0.133 ] } }, { "index": 122, "nt1": "///A/197", "nt2": "///A/204", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -153.732, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.370, "chi2": -173.766, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.704, "C1C1_dist": 10.576, "N1N9_dist": 8.822, "C6C8_dist": 9.767, "CNNC_torsion": 0.528, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 3.527, "planarity": 0.174, "simple_Shear": -0.177, "simple_Stretch": -0.278, "simple_Buckle": -2.222, "simple_Propeller": -2.740, "bp_simpleParams": [ -0.177, -0.278, -0.822, -2.222, -2.740, 0.711 ], "bp_params": [ -0.173, -0.280, -0.822, -2.185, -2.769, 0.711 ], "frame": { "rmsd": null, "origin": [ 179.122, 203.867, 162.445 ], "x_axis": [ 0.823, -0.220, 0.524 ], "y_axis": [ -0.391, -0.888, 0.241 ], "z_axis": [ 0.412, -0.403, -0.817 ], "quaternion": [ 0.172, 0.939, -0.163, 0.249 ] } }, { "index": 123, "nt1": "///A/208", "nt2": "///A/209", "bp": "G+U", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -109.608, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 146.191, "chi2": -173.773, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.218, "C1C1_dist": 6.916, "N1N9_dist": 7.239, "C6C8_dist": 7.160, "CNNC_torsion": 14.677, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-OP2[3.07],N2(amino)-O4(carbonyl)[3.66]", "interBase_angle": 17.124, "planarity": 0.256, "simple_Shear": 0.215, "simple_Stretch": 8.662, "simple_Buckle": -15.842, "simple_Propeller": -6.499, "bp_simpleParams": [ 0.215, 8.662, 1.112, -15.842, -6.499, 18.098 ], "bp_params": [ 8.543, 1.443, 1.112, -9.378, 14.327, 18.179 ], "frame": { "rmsd": null, "origin": [ 177.923, 213.813, 172.842 ], "x_axis": [ 0.599, 0.691, -0.404 ], "y_axis": [ -0.794, 0.450, -0.409 ], "z_axis": [ -0.101, 0.566, 0.819 ], "quaternion": [ 0.847, -0.288, 0.089, 0.439 ] } }, { "index": 124, "nt1": "///A/218", "nt2": "///A/479", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -140.409, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 89.817, "chi2": -162.565, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 35.766, "C1C1_dist": 11.688, "N1N9_dist": 10.731, "C6C8_dist": 12.264, "CNNC_torsion": 156.112, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N1[3.76]", "interBase_angle": 35.197, "planarity": 0.548, "simple_Shear": 3.832, "simple_Stretch": 4.758, "simple_Buckle": -24.412, "simple_Propeller": -25.355, "bp_simpleParams": [ 3.832, 4.758, 1.526, -24.412, -25.355, -124.040 ], "bp_params": [ 2.395, -5.620, 1.526, -10.904, 33.466, -125.848 ], "frame": { "rmsd": null, "origin": [ 154.313, 225.696, 182.758 ], "x_axis": [ -0.060, 0.764, 0.643 ], "y_axis": [ -0.773, 0.372, -0.514 ], "z_axis": [ -0.632, -0.528, 0.568 ], "quaternion": [ 0.685, 0.005, -0.465, 0.560 ] } }, { "index": 125, "nt1": "///A/219", "nt2": "///A/478", "bp": "A+U", "name": "--", "Saenger": "--", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": -179.229, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 15.960, "chi2": -19.340, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 23.182, "C1C1_dist": 10.307, "N1N9_dist": 7.600, "C6C8_dist": 5.430, "CNNC_torsion": -174.225, "hbonds_num": 1, "hbonds_desc": "N7*O4(carbonyl)[2.77]", "interBase_angle": 17.136, "planarity": 0.179, "simple_Shear": -8.887, "simple_Stretch": 1.223, "simple_Buckle": -0.346, "simple_Propeller": 17.133, "bp_simpleParams": [ -8.887, 1.223, -0.072, -0.346, 17.133, -175.436 ], "bp_params": [ -7.527, 4.880, -0.072, 6.962, 15.658, -175.470 ], "frame": { "rmsd": null, "origin": [ 152.882, 228.520, 175.367 ], "x_axis": [ -0.697, 0.570, 0.436 ], "y_axis": [ 0.581, 0.090, 0.809 ], "z_axis": [ 0.422, 0.817, -0.394 ], "quaternion": [ -0.005, 0.389, 0.738, 0.551 ] } }, { "index": 126, "nt1": "///A/224", "nt2": "///A/268", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -87.782, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 41.459, "chi2": -97.558, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.932, "C1C1_dist": 10.611, "N1N9_dist": 8.787, "C6C8_dist": 7.594, "CNNC_torsion": 17.521, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N7[3.44]", "interBase_angle": 57.114, "planarity": 0.732, "simple_Shear": -6.103, "simple_Stretch": 4.227, "simple_Buckle": 56.050, "simple_Propeller": 10.974, "bp_simpleParams": [ -6.103, 4.227, -2.064, 56.050, 10.974, -97.694 ], "bp_params": [ -3.056, 6.766, -2.064, 53.402, -20.253, -92.139 ], "frame": { "rmsd": null, "origin": [ 151.739, 243.817, 169.071 ], "x_axis": [ 0.688, -0.264, 0.676 ], "y_axis": [ 0.696, -0.025, -0.718 ], "z_axis": [ 0.206, 0.964, 0.167 ], "quaternion": [ 0.676, -0.622, -0.174, -0.355 ] } }, { "index": 127, "nt1": "///A/225", "nt2": "///A/235", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": ".HS", "DSSR": ".M-m", "intra_chain": true, "chi1": -66.462, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 28.774, "chi2": -116.931, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 109.079, "C1C1_dist": 8.718, "N1N9_dist": 7.976, "C6C8_dist": 8.889, "CNNC_torsion": -51.770, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[3.39],N6(amino)-N3[2.93]", "interBase_angle": 22.238, "planarity": 0.503, "simple_Shear": -6.760, "simple_Stretch": 1.913, "simple_Buckle": -22.224, "simple_Propeller": 0.776, "bp_simpleParams": [ -6.760, 1.913, 2.187, -22.224, 0.776, 22.709 ], "bp_params": [ -6.167, -3.365, 2.187, -16.410, -15.008, 22.675 ], "frame": { "rmsd": null, "origin": [ 156.887, 243.988, 152.172 ], "x_axis": [ -0.432, 0.324, -0.842 ], "y_axis": [ 0.825, 0.519, -0.223 ], "z_axis": [ 0.365, -0.791, -0.491 ], "quaternion": [ 0.386, 0.368, 0.781, -0.325 ] } }, { "index": 128, "nt1": "///A/227", "nt2": "///A/234", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.764, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.793, "chi2": -163.150, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.854, "C1C1_dist": 10.683, "N1N9_dist": 8.883, "C6C8_dist": 9.786, "CNNC_torsion": -7.904, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 13.594, "planarity": 0.167, "simple_Shear": -0.254, "simple_Stretch": -0.174, "simple_Buckle": -11.011, "simple_Propeller": -7.973, "bp_simpleParams": [ -0.254, -0.174, 0.024, -11.011, -7.973, -0.646 ], "bp_params": [ -0.251, -0.178, 0.024, -10.877, -8.155, -0.644 ], "frame": { "rmsd": null, "origin": [ 159.047, 241.882, 150.368 ], "x_axis": [ 0.245, 0.897, -0.369 ], "y_axis": [ 0.884, -0.050, 0.465 ], "z_axis": [ 0.398, -0.440, -0.805 ], "quaternion": [ 0.312, 0.725, 0.614, 0.010 ] } }, { "index": 129, "nt1": "///A/228", "nt2": "///A/233", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 175.268, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.176, "chi2": -131.809, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.437, "C1C1_dist": 10.400, "N1N9_dist": 8.765, "C6C8_dist": 9.782, "CNNC_torsion": -4.077, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.64],N3-N1(imino)[2.83],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 11.568, "planarity": 0.211, "simple_Shear": 0.107, "simple_Stretch": -0.204, "simple_Buckle": -8.676, "simple_Propeller": -7.651, "bp_simpleParams": [ 0.107, -0.204, -0.267, -8.676, -7.651, 3.562 ], "bp_params": [ 0.105, -0.205, -0.267, -8.751, -7.565, 3.559 ], "frame": { "rmsd": null, "origin": [ 159.050, 240.351, 146.777 ], "x_axis": [ 0.585, 0.792, -0.175 ], "y_axis": [ 0.695, -0.379, 0.611 ], "z_axis": [ 0.418, -0.479, -0.772 ], "quaternion": [ 0.330, 0.827, 0.449, 0.073 ] } }, { "index": 130, "nt1": "///A/229", "nt2": "///A/465", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": 167.431, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 22.540, "chi2": -152.242, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 130.616, "C1C1_dist": 9.706, "N1N9_dist": 9.323, "C6C8_dist": 10.380, "CNNC_torsion": 4.664, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.37]", "interBase_angle": 11.251, "planarity": 0.168, "simple_Shear": -6.754, "simple_Stretch": 4.272, "simple_Buckle": 3.181, "simple_Propeller": 10.792, "bp_simpleParams": [ -6.754, 4.272, 0.213, 3.181, 10.792, 46.835 ], "bp_params": [ -7.718, -2.075, 0.213, -5.792, 9.646, 46.930 ], "frame": { "rmsd": null, "origin": [ 166.363, 242.633, 143.625 ], "x_axis": [ 0.855, 0.518, 0.008 ], "y_axis": [ 0.333, -0.560, 0.759 ], "z_axis": [ 0.397, -0.646, -0.652 ], "quaternion": [ 0.401, 0.876, 0.243, 0.116 ] } }, { "index": 131, "nt1": "///A/230", "nt2": "///A/457", "bp": "A+G", "name": "--", "Saenger": "10-X", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -159.804, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 5.324, "chi2": -165.209, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 111.372, "C1C1_dist": 9.599, "N1N9_dist": 8.810, "C6C8_dist": 9.752, "CNNC_torsion": -172.695, "hbonds_num": 3, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.09],N6(amino)-N3[2.97],N1-N2(amino)[2.81]", "interBase_angle": 5.483, "planarity": 0.075, "simple_Shear": 2.268, "simple_Stretch": 4.527, "simple_Buckle": 5.461, "simple_Propeller": 0.495, "bp_simpleParams": [ 2.268, 4.527, -0.057, 5.461, 0.495, 70.674 ], "bp_params": [ -3.260, 3.874, -0.057, 1.707, 5.211, 70.723 ], "frame": { "rmsd": null, "origin": [ 168.215, 241.387, 141.638 ], "x_axis": [ 0.813, -0.024, 0.582 ], "y_axis": [ -0.367, -0.798, 0.479 ], "z_axis": [ 0.453, -0.602, -0.657 ], "quaternion": [ 0.299, 0.904, -0.108, 0.286 ] } }, { "index": 132, "nt1": "///A/236", "nt2": "///A/476", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -164.904, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 20.329, "chi2": -150.702, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 26.726, "C1C1_dist": 14.416, "N1N9_dist": 11.784, "C6C8_dist": 11.685, "CNNC_torsion": 173.550, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N1[3.39]", "interBase_angle": 10.327, "planarity": 0.146, "simple_Shear": -2.092, "simple_Stretch": 2.210, "simple_Buckle": -8.610, "simple_Propeller": 5.703, "bp_simpleParams": [ -2.092, 2.210, -0.238, -8.610, 5.703, 170.764 ], "bp_params": [ -1.714, -2.515, -0.238, -3.732, -9.629, 170.792 ], "frame": { "rmsd": null, "origin": [ 151.931, 238.766, 167.186 ], "x_axis": [ -0.202, -0.287, 0.936 ], "y_axis": [ -0.939, -0.215, -0.268 ], "z_axis": [ 0.279, -0.933, -0.227 ], "quaternion": [ 0.299, 0.557, -0.551, 0.545 ] } }, { "index": 133, "nt1": "///A/237", "nt2": "///A/477", "bp": "U+A", "name": "rWC", "Saenger": "21-XXI", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": 175.582, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 37.069, "chi2": -140.513, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 31.908, "C1C1_dist": 11.151, "N1N9_dist": 8.875, "C6C8_dist": 9.767, "CNNC_torsion": -166.177, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.04],N3(imino)-N1[2.83]", "interBase_angle": 9.777, "planarity": 0.210, "simple_Shear": 1.158, "simple_Stretch": -0.073, "simple_Buckle": 3.189, "simple_Propeller": 9.243, "bp_simpleParams": [ 1.158, -0.073, 0.618, 3.189, 9.243, -169.633 ], "bp_params": [ -0.207, -1.142, 0.618, 8.811, -4.238, -169.610 ], "frame": { "rmsd": null, "origin": [ 151.093, 234.858, 166.587 ], "x_axis": [ 0.609, 0.494, -0.621 ], "y_axis": [ 0.675, 0.088, 0.732 ], "z_axis": [ 0.416, -0.865, -0.280 ], "quaternion": [ 0.595, 0.671, 0.436, -0.076 ] } }, { "index": 134, "nt1": "///A/238", "nt2": "///A/265", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.220, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.604, "chi2": -165.262, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.695, "C1C1_dist": 10.435, "N1N9_dist": 8.729, "C6C8_dist": 9.672, "CNNC_torsion": -11.198, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.90],O4(carbonyl)-N6(amino)[2.97]", "interBase_angle": 6.152, "planarity": 0.302, "simple_Shear": -0.130, "simple_Stretch": -0.330, "simple_Buckle": 5.701, "simple_Propeller": 2.312, "bp_simpleParams": [ -0.130, -0.330, 1.194, 5.701, 2.312, 0.548 ], "bp_params": [ -0.125, -0.332, 1.194, 5.661, 2.408, 0.548 ], "frame": { "rmsd": null, "origin": [ 149.249, 231.880, 163.089 ], "x_axis": [ 0.100, 0.379, -0.920 ], "y_axis": [ 0.906, 0.348, 0.242 ], "z_axis": [ 0.411, -0.858, -0.309 ], "quaternion": [ 0.534, 0.515, 0.624, -0.247 ] } }, { "index": 135, "nt1": "///A/239", "nt2": "///A/264", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.056, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.847, "chi2": -178.731, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.141, "C1C1_dist": 10.690, "N1N9_dist": 8.874, "C6C8_dist": 9.790, "CNNC_torsion": -6.585, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 7.506, "planarity": 0.208, "simple_Shear": 0.145, "simple_Stretch": -0.220, "simple_Buckle": 7.472, "simple_Propeller": -0.715, "bp_simpleParams": [ 0.145, -0.220, 0.580, 7.472, -0.715, -0.196 ], "bp_params": [ 0.143, -0.222, 0.580, 7.465, -0.787, -0.196 ], "frame": { "rmsd": null, "origin": [ 148.921, 229.272, 160.887 ], "x_axis": [ 0.594, 0.574, -0.563 ], "y_axis": [ 0.715, -0.056, 0.697 ], "z_axis": [ 0.369, -0.817, -0.444 ], "quaternion": [ 0.523, 0.724, 0.445, -0.067 ] } }, { "index": 136, "nt1": "///A/240", "nt2": "///A/263", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.641, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.698, "chi2": -172.949, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.429, "C1C1_dist": 10.494, "N1N9_dist": 8.808, "C6C8_dist": 9.780, "CNNC_torsion": -6.878, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.71],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 7.875, "planarity": 0.229, "simple_Shear": 0.175, "simple_Stretch": -0.237, "simple_Buckle": 7.827, "simple_Propeller": -0.868, "bp_simpleParams": [ 0.175, -0.237, 0.665, 7.827, -0.868, 1.450 ], "bp_params": [ 0.172, -0.240, 0.665, 7.815, -0.969, 1.447 ], "frame": { "rmsd": null, "origin": [ 148.251, 226.919, 157.594 ], "x_axis": [ 0.817, 0.569, -0.100 ], "y_axis": [ 0.302, -0.272, 0.914 ], "z_axis": [ 0.492, -0.776, -0.393 ], "quaternion": [ 0.536, 0.788, 0.276, 0.124 ] } }, { "index": 137, "nt1": "///A/241", "nt2": "///A/262", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -155.533, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.896, "chi2": 170.359, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.278, "C1C1_dist": 10.549, "N1N9_dist": 8.824, "C6C8_dist": 9.776, "CNNC_torsion": 10.144, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 20.524, "planarity": 0.289, "simple_Shear": 0.173, "simple_Stretch": -0.147, "simple_Buckle": 15.438, "simple_Propeller": 13.523, "bp_simpleParams": [ 0.173, -0.147, -0.148, 15.438, 13.523, 1.469 ], "bp_params": [ 0.170, -0.151, -0.148, 15.716, 13.199, 1.465 ], "frame": { "rmsd": null, "origin": [ 149.618, 225.559, 154.478 ], "x_axis": [ 0.799, 0.385, 0.462 ], "y_axis": [ -0.167, -0.595, 0.786 ], "z_axis": [ 0.578, -0.705, -0.411 ], "quaternion": [ 0.445, 0.837, 0.065, 0.310 ] } }, { "index": 138, "nt1": "///A/243", "nt2": "///A/260", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -147.706, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 93.948, "chi2": -166.963, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 12.424, "C1C1_dist": 9.595, "N1N9_dist": 8.353, "C6C8_dist": 8.769, "CNNC_torsion": 81.584, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[3.01],N2(amino)-N7[2.99],N3-N6(amino)[3.02]", "interBase_angle": 5.615, "planarity": 0.363, "simple_Shear": 7.183, "simple_Stretch": 1.904, "simple_Buckle": 5.548, "simple_Propeller": -0.866, "bp_simpleParams": [ 7.183, 1.904, -1.728, 5.548, -0.866, -5.711 ], "bp_params": [ 6.293, -3.951, -1.728, 3.153, -4.646, -5.713 ], "frame": { "rmsd": null, "origin": [ 156.270, 223.561, 151.216 ], "x_axis": [ 0.029, -0.741, 0.670 ], "y_axis": [ -0.408, -0.621, -0.669 ], "z_axis": [ 0.913, -0.254, -0.320 ], "quaternion": [ -0.148, 0.702, -0.409, 0.564 ] } }, { "index": 139, "nt1": "///A/243", "nt2": "///A/261", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -147.706, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 118.282, "chi2": -163.855, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 22.477, "C1C1_dist": 9.136, "N1N9_dist": 8.503, "C6C8_dist": 9.575, "CNNC_torsion": -28.645, "hbonds_num": 1, "hbonds_desc": "N3-N4(amino)[3.14]", "interBase_angle": 3.214, "planarity": 0.271, "simple_Shear": 6.901, "simple_Stretch": 2.700, "simple_Buckle": 1.960, "simple_Propeller": -2.547, "bp_simpleParams": [ 6.901, 2.700, 1.475, 1.960, -2.547, 30.169 ], "bp_params": [ 6.739, -3.081, 1.475, -0.467, -3.179, 30.179 ], "frame": { "rmsd": null, "origin": [ 154.648, 223.293, 151.623 ], "x_axis": [ 0.155, -0.515, 0.843 ], "y_axis": [ -0.340, -0.829, -0.444 ], "z_axis": [ 0.928, -0.218, -0.303 ], "quaternion": [ -0.075, 0.756, -0.283, 0.585 ] } }, { "index": 140, "nt1": "///A/244", "nt2": "///A/259", "bp": "A+A", "name": "--", "Saenger": "02-II", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": -129.995, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 17.226, "chi2": -168.791, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 19.480, "C1C1_dist": 11.087, "N1N9_dist": 8.332, "C6C8_dist": 6.416, "CNNC_torsion": -120.387, "hbonds_num": 2, "hbonds_desc": "N7-N6(amino)[3.84],N6(amino)-OP2[3.17]", "interBase_angle": 15.577, "planarity": 0.392, "simple_Shear": -8.048, "simple_Stretch": 0.825, "simple_Buckle": -15.465, "simple_Propeller": -1.866, "bp_simpleParams": [ -8.048, 0.825, 1.913, -15.465, -1.866, -163.908 ], "bp_params": [ -6.205, 5.191, 1.913, -13.852, 7.125, -163.822 ], "frame": { "rmsd": null, "origin": [ 159.107, 221.644, 151.221 ], "x_axis": [ -0.411, -0.125, -0.903 ], "y_axis": [ -0.157, -0.966, 0.206 ], "z_axis": [ -0.898, 0.226, 0.378 ], "quaternion": [ 0.009, -0.542, 0.130, 0.830 ] } }, { "index": 141, "nt1": "///A/245", "nt2": "///A/246", "bp": "G+U", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -112.355, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 143.921, "chi2": -174.884, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.020, "C1C1_dist": 6.742, "N1N9_dist": 6.983, "C6C8_dist": 6.946, "CNNC_torsion": 11.396, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-OP2[2.66],N2(amino)-O4(carbonyl)[3.05]", "interBase_angle": 19.488, "planarity": 0.243, "simple_Shear": 0.111, "simple_Stretch": 8.008, "simple_Buckle": -17.817, "simple_Propeller": -7.898, "bp_simpleParams": [ 0.111, 8.008, 0.815, -17.817, -7.898, 12.788 ], "bp_params": [ 7.896, 1.340, 0.815, -10.954, 16.119, 12.857 ], "frame": { "rmsd": null, "origin": [ 162.431, 216.265, 154.639 ], "x_axis": [ -0.062, -0.516, 0.855 ], "y_axis": [ -0.484, -0.733, -0.478 ], "z_axis": [ 0.873, -0.443, -0.204 ], "quaternion": [ -0.012, 0.685, -0.365, 0.631 ] } }, { "index": 142, "nt1": "///A/246", "nt2": "///A/258", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -174.884, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 33.704, "chi2": -177.591, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 24.165, "C1C1_dist": 9.434, "N1N9_dist": 7.007, "C6C8_dist": 6.140, "CNNC_torsion": -164.838, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.01],N3(imino)-N7[2.88]", "interBase_angle": 9.133, "planarity": 0.123, "simple_Shear": 4.856, "simple_Stretch": 1.687, "simple_Buckle": 7.377, "simple_Propeller": 5.384, "bp_simpleParams": [ 4.856, 1.687, -0.064, 7.377, 5.384, -96.733 ], "bp_params": [ 4.492, -2.500, -0.064, 8.928, -1.922, -96.568 ], "frame": { "rmsd": null, "origin": [ 162.686, 220.840, 149.903 ], "x_axis": [ -0.233, -0.930, 0.282 ], "y_axis": [ -0.410, -0.169, -0.896 ], "z_axis": [ 0.882, -0.325, -0.342 ], "quaternion": [ 0.253, -0.565, 0.593, -0.515 ] } }, { "index": 143, "nt1": "///A/247", "nt2": "///A/257", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -172.613, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 5.579, "chi2": -167.301, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 91.259, "C1C1_dist": 9.872, "N1N9_dist": 8.546, "C6C8_dist": 8.897, "CNNC_torsion": 176.122, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.68],N6(amino)-O2'(hydroxyl)[3.33],N6(amino)-N3[3.07]", "interBase_angle": 2.000, "planarity": 0.043, "simple_Shear": -7.475, "simple_Stretch": 2.573, "simple_Buckle": 1.984, "simple_Propeller": -0.254, "bp_simpleParams": [ -7.475, 2.573, 0.147, 1.984, -0.254, -10.790 ], "bp_params": [ -6.789, -4.050, 0.147, 1.474, 1.352, -10.790 ], "frame": { "rmsd": null, "origin": [ 165.240, 215.656, 151.823 ], "x_axis": [ -0.154, -0.879, 0.451 ], "y_axis": [ -0.452, -0.343, -0.823 ], "z_axis": [ 0.879, -0.330, -0.345 ], "quaternion": [ -0.199, 0.619, -0.537, 0.537 ] } }, { "index": 144, "nt1": "///A/248", "nt2": "///A/256", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 179.985, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.455, "chi2": -170.030, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.135, "C1C1_dist": 10.555, "N1N9_dist": 8.874, "C6C8_dist": 9.862, "CNNC_torsion": -1.297, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.70]", "interBase_angle": 5.639, "planarity": 0.124, "simple_Shear": -0.217, "simple_Stretch": -0.168, "simple_Buckle": 2.078, "simple_Propeller": 5.243, "bp_simpleParams": [ -0.217, -0.168, 0.502, 2.078, 5.243, 2.889 ], "bp_params": [ -0.215, -0.171, 0.502, 1.989, 5.277, 2.891 ], "frame": { "rmsd": null, "origin": [ 167.918, 213.212, 151.515 ], "x_axis": [ -0.556, -0.711, -0.430 ], "y_axis": [ -0.134, 0.588, -0.798 ], "z_axis": [ 0.820, -0.386, -0.422 ], "quaternion": [ 0.390, -0.264, 0.801, -0.369 ] } }, { "index": 145, "nt1": "///A/249", "nt2": "///A/255", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.336, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.704, "chi2": 175.766, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.136, "C1C1_dist": 10.526, "N1N9_dist": 8.831, "C6C8_dist": 9.823, "CNNC_torsion": -2.737, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.97]", "interBase_angle": 7.064, "planarity": 0.201, "simple_Shear": 0.221, "simple_Stretch": -0.194, "simple_Buckle": 5.283, "simple_Propeller": 4.688, "bp_simpleParams": [ 0.221, -0.194, 0.565, 5.283, 4.688, 3.165 ], "bp_params": [ 0.217, -0.198, 0.565, 5.370, 4.589, 3.164 ], "frame": { "rmsd": null, "origin": [ 170.479, 210.538, 151.165 ], "x_axis": [ -0.536, -0.221, -0.815 ], "y_axis": [ 0.235, 0.888, -0.396 ], "z_axis": [ 0.811, -0.404, -0.424 ], "quaternion": [ 0.482, 0.004, 0.844, -0.237 ] } }, { "index": 146, "nt1": "///A/250", "nt2": "///A/254", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -125.971, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 87.425, "chi2": -166.160, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 20.311, "C1C1_dist": 9.387, "N1N9_dist": 8.008, "C6C8_dist": 8.432, "CNNC_torsion": -44.458, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.24],N3-N6(amino)[2.72]", "interBase_angle": 35.906, "planarity": 0.632, "simple_Shear": 6.395, "simple_Stretch": 1.089, "simple_Buckle": 0.975, "simple_Propeller": 35.892, "bp_simpleParams": [ 6.395, 1.089, 1.654, 0.975, 35.892, 0.399 ], "bp_params": [ 5.409, -3.581, 1.654, 25.244, 25.534, 0.399 ], "frame": { "rmsd": null, "origin": [ 172.639, 208.121, 151.112 ], "x_axis": [ -0.377, 0.644, -0.666 ], "y_axis": [ 0.645, 0.699, 0.310 ], "z_axis": [ 0.665, -0.313, -0.678 ], "quaternion": [ 0.401, 0.388, 0.830, -0.001 ] } }, { "index": 147, "nt1": "///A/266", "nt2": "///A/476", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -173.368, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 149.786, "chi2": -150.702, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 93.037, "C1C1_dist": 5.871, "N1N9_dist": 7.342, "C6C8_dist": 9.785, "CNNC_torsion": -44.319, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.17],O2'(hydroxyl)-N3[2.42]", "interBase_angle": 14.227, "planarity": 0.342, "simple_Shear": 0.832, "simple_Stretch": 7.288, "simple_Buckle": -5.601, "simple_Propeller": -13.078, "bp_simpleParams": [ 0.832, 7.288, -1.089, -5.601, -13.078, 151.527 ], "bp_params": [ 2.812, 6.775, -1.089, -8.980, -11.034, 151.570 ], "frame": { "rmsd": null, "origin": [ 148.862, 237.356, 164.449 ], "x_axis": [ 0.480, 0.366, -0.797 ], "y_axis": [ -0.780, -0.238, -0.579 ], "z_axis": [ -0.401, 0.900, 0.171 ], "quaternion": [ 0.594, -0.622, 0.167, 0.482 ] } }, { "index": 148, "nt1": "///A/269", "nt2": "///A/473", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -140.320, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.838, "chi2": -157.241, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.781, "C1C1_dist": 10.445, "N1N9_dist": 8.726, "C6C8_dist": 9.629, "CNNC_torsion": 8.660, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.86],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 14.370, "planarity": 0.281, "simple_Shear": -0.103, "simple_Stretch": -0.429, "simple_Buckle": -14.095, "simple_Propeller": -2.800, "bp_simpleParams": [ -0.103, -0.429, -1.514, -14.095, -2.800, -0.216 ], "bp_params": [ -0.101, -0.430, -1.514, -14.086, -2.845, -0.214 ], "frame": { "rmsd": null, "origin": [ 158.599, 247.344, 169.346 ], "x_axis": [ 0.676, -0.229, -0.700 ], "y_axis": [ -0.641, 0.286, -0.712 ], "z_axis": [ 0.363, 0.930, 0.047 ], "quaternion": [ 0.709, -0.579, 0.375, 0.145 ] } }, { "index": 149, "nt1": "///A/270", "nt2": "///A/472", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.876, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.831, "chi2": -162.148, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.449, "C1C1_dist": 10.674, "N1N9_dist": 8.865, "C6C8_dist": 9.769, "CNNC_torsion": 8.143, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 3.411, "planarity": 0.215, "simple_Shear": 0.171, "simple_Stretch": -0.277, "simple_Buckle": -3.173, "simple_Propeller": 1.254, "bp_simpleParams": [ 0.171, -0.277, -0.840, -3.173, 1.254, -1.101 ], "bp_params": [ 0.167, -0.279, -0.840, -3.157, 1.292, -1.101 ], "frame": { "rmsd": null, "origin": [ 161.632, 249.463, 169.375 ], "x_axis": [ 0.365, -0.138, -0.921 ], "y_axis": [ -0.855, 0.341, -0.390 ], "z_axis": [ 0.368, 0.930, 0.006 ], "quaternion": [ 0.654, -0.504, 0.492, 0.274 ] } }, { "index": 150, "nt1": "///A/271", "nt2": "///A/471", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 176.030, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.009, "chi2": 178.506, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.319, "C1C1_dist": 10.712, "N1N9_dist": 8.903, "C6C8_dist": 9.834, "CNNC_torsion": 3.392, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 7.523, "planarity": 0.126, "simple_Shear": 0.164, "simple_Stretch": -0.181, "simple_Buckle": 0.325, "simple_Propeller": 7.516, "bp_simpleParams": [ 0.164, -0.181, 0.304, 0.325, 7.516, 0.669 ], "bp_params": [ 0.161, -0.183, 0.304, 0.415, 7.512, 0.671 ], "frame": { "rmsd": null, "origin": [ 164.822, 252.089, 169.370 ], "x_axis": [ -0.159, 0.077, -0.984 ], "y_axis": [ -0.950, 0.260, 0.174 ], "z_axis": [ 0.269, 0.963, 0.032 ], "quaternion": [ 0.532, -0.371, 0.589, 0.482 ] } }, { "index": 151, "nt1": "///A/272", "nt2": "///A/417", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 175.277, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.156, "chi2": -105.061, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 52.387, "C1C1_dist": 10.675, "N1N9_dist": 8.819, "C6C8_dist": 9.698, "CNNC_torsion": -16.160, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.86]", "interBase_angle": 7.514, "planarity": 0.240, "simple_Shear": 0.135, "simple_Stretch": -0.336, "simple_Buckle": 4.213, "simple_Propeller": -6.221, "bp_simpleParams": [ 0.135, -0.336, 0.870, 4.213, -6.221, -2.261 ], "bp_params": [ 0.132, -0.338, 0.870, 4.159, -6.257, -2.263 ], "frame": { "rmsd": null, "origin": [ 168.500, 254.100, 167.441 ], "x_axis": [ -0.592, -0.015, -0.806 ], "y_axis": [ -0.800, 0.129, 0.585 ], "z_axis": [ 0.096, 0.991, -0.088 ], "quaternion": [ 0.335, -0.303, 0.673, 0.586 ] } }, { "index": 152, "nt1": "///A/273", "nt2": "///A/298", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": 172.936, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 28.595, "chi2": -137.538, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 30.412, "C1C1_dist": 9.087, "N1N9_dist": 6.673, "C6C8_dist": 5.796, "CNNC_torsion": -156.188, "hbonds_num": 3, "hbonds_desc": "OP2*O4(carbonyl)[2.80],N7-N3(imino)[2.71],N6(amino)-O2(carbonyl)[3.10]", "interBase_angle": 25.787, "planarity": 0.381, "simple_Shear": -4.583, "simple_Stretch": 1.793, "simple_Buckle": 6.228, "simple_Propeller": 25.024, "bp_simpleParams": [ -4.583, 1.793, 0.110, 6.228, 25.024, -104.514 ], "bp_params": [ -4.259, -2.466, 0.110, -15.758, 20.412, -104.868 ], "frame": { "rmsd": null, "origin": [ 169.762, 257.389, 166.872 ], "x_axis": [ -0.848, 0.328, 0.417 ], "y_axis": [ 0.488, 0.175, 0.855 ], "z_axis": [ 0.208, 0.928, -0.309 ], "quaternion": [ -0.068, 0.267, 0.763, 0.584 ] } }, { "index": 153, "nt1": "///A/274", "nt2": "///A/298", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": 176.035, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 12.919, "chi2": -137.538, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 45.732, "C1C1_dist": 9.608, "N1N9_dist": 7.192, "C6C8_dist": 6.763, "CNNC_torsion": -74.257, "hbonds_num": 1, "hbonds_desc": "N7-N3(imino)[3.21]", "interBase_angle": 46.145, "planarity": 0.663, "simple_Shear": -4.314, "simple_Stretch": -1.374, "simple_Buckle": 18.935, "simple_Propeller": 42.081, "bp_simpleParams": [ -4.314, -1.374, 2.897, 18.935, 42.081, -44.159 ], "bp_params": [ -3.113, -3.288, 2.897, -4.408, 45.934, -47.526 ], "frame": { "rmsd": null, "origin": [ 168.178, 259.372, 166.415 ], "x_axis": [ -0.536, 0.201, 0.820 ], "y_axis": [ 0.836, -0.008, 0.549 ], "z_axis": [ 0.117, 0.979, -0.164 ], "quaternion": [ -0.270, 0.399, 0.650, 0.587 ] } }, { "index": 154, "nt1": "///A/274", "nt2": "///A/415", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": 176.035, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 92.830, "chi2": -143.619, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 152.219, "C1C1_dist": 6.360, "N1N9_dist": 7.817, "C6C8_dist": 10.246, "CNNC_torsion": -29.581, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.81],N3-O2'(hydroxyl)[3.26]", "interBase_angle": 18.848, "planarity": 0.299, "simple_Shear": -1.108, "simple_Stretch": 7.312, "simple_Buckle": 14.070, "simple_Propeller": -12.542, "bp_simpleParams": [ -1.108, 7.312, -0.893, 14.070, -12.542, 144.366 ], "bp_params": [ -3.370, 6.583, -0.893, 17.325, -7.424, 144.051 ], "frame": { "rmsd": null, "origin": [ 168.417, 262.025, 160.660 ], "x_axis": [ -0.766, 0.003, -0.642 ], "y_axis": [ -0.606, -0.336, 0.721 ], "z_axis": [ -0.214, 0.942, 0.260 ], "quaternion": [ 0.198, -0.278, 0.541, 0.769 ] } }, { "index": 155, "nt1": "///A/275", "nt2": "///A/297", "bp": "A-G", "name": "--", "Saenger": "--", "LW": ".WS", "DSSR": ".W-m", "intra_chain": true, "chi1": -175.245, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 35.866, "chi2": -136.463, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 117.535, "C1C1_dist": 8.348, "N1N9_dist": 7.920, "C6C8_dist": 9.239, "CNNC_torsion": 62.388, "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[2.74],N1-O2'(hydroxyl)[3.02]", "interBase_angle": 39.508, "planarity": 0.556, "simple_Shear": -5.877, "simple_Stretch": 2.273, "simple_Buckle": 26.499, "simple_Propeller": 29.304, "bp_simpleParams": [ -5.877, 2.273, -2.416, 26.499, 29.304, 43.896 ], "bp_params": [ -5.956, -2.055, -2.416, 1.256, 39.488, 46.353 ], "frame": { "rmsd": null, "origin": [ 165.545, 262.883, 169.469 ], "x_axis": [ -0.452, -0.364, 0.815 ], "y_axis": [ 0.892, -0.163, 0.422 ], "z_axis": [ -0.021, 0.917, 0.398 ], "quaternion": [ -0.443, 0.280, 0.472, 0.709 ] } }, { "index": 156, "nt1": "///A/276", "nt2": "///A/295", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.492, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.304, "chi2": 161.033, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.226, "C1C1_dist": 10.636, "N1N9_dist": 8.875, "C6C8_dist": 9.817, "CNNC_torsion": -9.308, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 3.136, "planarity": 0.205, "simple_Shear": 0.236, "simple_Stretch": -0.234, "simple_Buckle": 2.134, "simple_Propeller": 2.299, "bp_simpleParams": [ 0.236, -0.234, 0.770, 2.134, 2.299, 1.480 ], "bp_params": [ 0.232, -0.239, 0.770, 2.175, 2.260, 1.480 ], "frame": { "rmsd": null, "origin": [ 167.833, 268.891, 172.593 ], "x_axis": [ 0.655, -0.565, 0.501 ], "y_axis": [ 0.619, 0.021, -0.785 ], "z_axis": [ 0.433, 0.825, 0.363 ], "quaternion": [ 0.714, -0.564, -0.024, -0.414 ] } }, { "index": 157, "nt1": "///A/277", "nt2": "///A/294", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.916, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.648, "chi2": 172.632, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.235, "C1C1_dist": 10.764, "N1N9_dist": 8.942, "C6C8_dist": 9.867, "CNNC_torsion": -9.841, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 8.511, "planarity": 0.113, "simple_Shear": 0.156, "simple_Stretch": -0.150, "simple_Buckle": 0.414, "simple_Propeller": -8.501, "bp_simpleParams": [ 0.156, -0.150, 0.187, 0.414, -8.501, 0.159 ], "bp_params": [ 0.154, -0.152, 0.187, 0.320, -8.505, 0.160 ], "frame": { "rmsd": null, "origin": [ 168.378, 270.536, 175.664 ], "x_axis": [ 0.821, -0.570, -0.009 ], "y_axis": [ 0.292, 0.434, -0.852 ], "z_axis": [ 0.490, 0.697, 0.523 ], "quaternion": [ 0.833, -0.465, 0.150, -0.259 ] } }, { "index": 158, "nt1": "///A/278", "nt2": "///A/293", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.256, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.004, "chi2": -159.831, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.868, "C1C1_dist": 10.634, "N1N9_dist": 8.859, "C6C8_dist": 9.739, "CNNC_torsion": 12.739, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.88],N1-N3(imino)[2.82]", "interBase_angle": 8.450, "planarity": 0.166, "simple_Shear": 0.079, "simple_Stretch": -0.215, "simple_Buckle": -6.656, "simple_Propeller": 5.205, "bp_simpleParams": [ 0.079, -0.215, -0.768, -6.656, 5.205, -3.020 ], "bp_params": [ 0.076, -0.216, -0.768, -6.595, 5.282, -3.019 ], "frame": { "rmsd": null, "origin": [ 170.160, 271.377, 178.603 ], "x_axis": [ 0.669, -0.358, -0.651 ], "y_axis": [ -0.120, 0.812, -0.571 ], "z_axis": [ 0.733, 0.460, 0.500 ], "quaternion": [ 0.863, -0.298, 0.401, -0.069 ] } }, { "index": 159, "nt1": "///A/279", "nt2": "///A/292", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.113, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.430, "chi2": -158.951, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.738, "C1C1_dist": 10.526, "N1N9_dist": 8.776, "C6C8_dist": 9.686, "CNNC_torsion": 11.775, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.91],N1-N3(imino)[2.78]", "interBase_angle": 11.620, "planarity": 0.210, "simple_Shear": 0.087, "simple_Stretch": -0.250, "simple_Buckle": 4.019, "simple_Propeller": 10.903, "bp_simpleParams": [ 0.087, -0.250, -0.599, 4.019, 10.903, -1.545 ], "bp_params": [ 0.084, -0.251, -0.599, 4.173, 10.845, -1.551 ], "frame": { "rmsd": null, "origin": [ 172.736, 271.465, 180.507 ], "x_axis": [ 0.461, 0.020, -0.887 ], "y_axis": [ -0.434, 0.877, -0.206 ], "z_axis": [ 0.774, 0.480, 0.413 ], "quaternion": [ 0.829, -0.207, 0.501, 0.137 ] } }, { "index": 160, "nt1": "///A/280", "nt2": "///A/291", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.054, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 62.069, "chi2": -133.760, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 61.708, "C1C1_dist": 8.198, "N1N9_dist": 6.816, "C6C8_dist": 7.833, "CNNC_torsion": 19.767, "hbonds_num": 0, "hbonds_desc": "", "interBase_angle": 10.281, "planarity": 0.754, "simple_Shear": -0.032, "simple_Stretch": -2.569, "simple_Buckle": -6.655, "simple_Propeller": -7.837, "bp_simpleParams": [ -0.032, -2.569, -2.602, -6.655, -7.837, 11.125 ], "bp_params": [ -0.041, -2.569, -2.602, -6.680, -7.815, 11.132 ], "frame": { "rmsd": null, "origin": [ 176.283, 273.304, 181.462 ], "x_axis": [ 0.014, 0.262, -0.965 ], "y_axis": [ -0.388, 0.891, 0.236 ], "z_axis": [ 0.922, 0.371, 0.114 ], "quaternion": [ 0.710, -0.047, 0.664, 0.229 ] } }, { "index": 161, "nt1": "///A/281", "nt2": "///A/290", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -71.472, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 62.252, "chi2": -141.098, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 59.467, "C1C1_dist": 9.884, "N1N9_dist": 8.462, "C6C8_dist": 9.594, "CNNC_torsion": 9.827, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.95],N1-N3(imino)[2.60]", "interBase_angle": 5.938, "planarity": 0.124, "simple_Shear": 0.049, "simple_Stretch": -0.328, "simple_Buckle": 0.411, "simple_Propeller": 5.924, "bp_simpleParams": [ 0.049, -0.328, -0.429, 0.411, 5.924, 7.055 ], "bp_params": [ 0.046, -0.329, -0.429, 0.471, 5.919, 7.064 ], "frame": { "rmsd": null, "origin": [ 180.599, 273.922, 180.333 ], "x_axis": [ -0.227, 0.721, -0.655 ], "y_axis": [ -0.156, 0.637, 0.755 ], "z_axis": [ 0.961, 0.274, -0.033 ], "quaternion": [ 0.587, 0.205, 0.689, 0.373 ] } }, { "index": 162, "nt1": "///A/282", "nt2": "///A/289", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -73.380, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 51.401, "chi2": -119.085, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 47.689, "C1C1_dist": 10.805, "N1N9_dist": 8.905, "C6C8_dist": 9.726, "CNNC_torsion": 8.425, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.77],N1(imino)-N3[2.86],N2(amino)-O2(carbonyl)[2.83]", "interBase_angle": 4.238, "planarity": 0.178, "simple_Shear": -0.052, "simple_Stretch": -0.294, "simple_Buckle": 3.535, "simple_Propeller": 2.337, "bp_simpleParams": [ -0.052, -0.294, -0.641, 3.535, 2.337, -4.392 ], "bp_params": [ -0.052, -0.294, -0.641, 3.534, 2.338, -4.391 ], "frame": { "rmsd": null, "origin": [ 183.752, 274.006, 179.764 ], "x_axis": [ -0.311, 0.923, -0.227 ], "y_axis": [ -0.009, 0.236, 0.972 ], "z_axis": [ 0.950, 0.304, -0.065 ], "quaternion": [ 0.464, 0.360, 0.635, 0.502 ] } }, { "index": 163, "nt1": "///A/283", "nt2": "///A/288", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.876, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.839, "chi2": -170.443, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.149, "C1C1_dist": 10.449, "N1N9_dist": 8.691, "C6C8_dist": 9.606, "CNNC_torsion": 5.091, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.83],N1(imino)-N3[2.86],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 10.382, "planarity": 0.348, "simple_Shear": -0.086, "simple_Stretch": -0.423, "simple_Buckle": 9.814, "simple_Propeller": -3.389, "bp_simpleParams": [ -0.086, -0.423, -1.048, 9.814, -3.389, 1.107 ], "bp_params": [ -0.084, -0.423, -1.048, 9.833, -3.333, 1.103 ], "frame": { "rmsd": null, "origin": [ 186.172, 276.692, 179.598 ], "x_axis": [ -0.334, 0.888, 0.316 ], "y_axis": [ 0.145, -0.283, 0.948 ], "z_axis": [ 0.931, 0.362, -0.034 ], "quaternion": [ 0.295, 0.496, 0.521, 0.629 ] } }, { "index": 164, "nt1": "///A/299", "nt2": "///A/416", "bp": "U+U", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -141.865, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 15.404, "chi2": -158.200, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 88.856, "C1C1_dist": 9.216, "N1N9_dist": 7.965, "C6C8_dist": 9.283, "CNNC_torsion": -144.722, "hbonds_num": 2, "hbonds_desc": "N3(imino)-O2(carbonyl)[3.49],O4(carbonyl)*O2(carbonyl)[2.97]", "unusual_base2base_hbonds": 1, "interBase_angle": 20.040, "planarity": 0.290, "simple_Shear": 2.547, "simple_Stretch": 1.884, "simple_Buckle": 8.565, "simple_Propeller": 18.117, "bp_simpleParams": [ 2.547, 1.884, -0.043, 8.565, 18.117, 102.054 ], "bp_params": [ -0.942, 3.025, -0.043, -14.327, 14.011, 102.034 ], "frame": { "rmsd": null, "origin": [ 168.857, 260.153, 157.239 ], "x_axis": [ 0.934, 0.305, 0.188 ], "y_axis": [ -0.062, -0.379, 0.923 ], "z_axis": [ 0.352, -0.874, -0.335 ], "quaternion": [ 0.552, 0.814, 0.074, 0.166 ] } }, { "index": 165, "nt1": "///A/300", "nt2": "///A/451", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -80.042, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 53.331, "chi2": -152.272, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 55.601, "C1C1_dist": 10.544, "N1N9_dist": 8.845, "C6C8_dist": 9.773, "CNNC_torsion": 8.646, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 9.838, "planarity": 0.168, "simple_Shear": -0.151, "simple_Stretch": -0.252, "simple_Buckle": -9.424, "simple_Propeller": 2.824, "bp_simpleParams": [ -0.151, -0.252, -0.874, -9.424, 2.824, -0.547 ], "bp_params": [ -0.148, -0.254, -0.874, -9.459, 2.705, -0.545 ], "frame": { "rmsd": null, "origin": [ 169.962, 255.907, 153.563 ], "x_axis": [ 0.382, -0.229, 0.895 ], "y_axis": [ -0.776, -0.605, 0.176 ], "z_axis": [ 0.502, -0.762, -0.409 ], "quaternion": [ 0.303, 0.774, -0.325, 0.451 ] } }, { "index": 166, "nt1": "///A/302", "nt2": "///A/416", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -131.968, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.535, "chi2": -158.200, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.800, "C1C1_dist": 10.195, "N1N9_dist": 8.586, "C6C8_dist": 9.475, "CNNC_torsion": 17.559, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.89],N1-N3(imino)[2.85]", "interBase_angle": 10.128, "planarity": 0.370, "simple_Shear": 0.572, "simple_Stretch": -0.604, "simple_Buckle": -10.082, "simple_Propeller": 0.963, "bp_simpleParams": [ 0.572, -0.604, -1.865, -10.082, 0.963, -3.220 ], "bp_params": [ 0.535, -0.638, -1.865, -10.006, 1.565, -3.208 ], "frame": { "rmsd": null, "origin": [ 170.070, 260.142, 155.624 ], "x_axis": [ 0.654, 0.488, -0.579 ], "y_axis": [ -0.697, 0.091, -0.711 ], "z_axis": [ -0.294, 0.868, 0.399 ], "quaternion": [ 0.732, -0.539, 0.097, 0.405 ] } }, { "index": 167, "nt1": "///A/303", "nt2": "///A/415", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.869, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.605, "chi2": -143.619, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.870, "C1C1_dist": 10.790, "N1N9_dist": 8.942, "C6C8_dist": 9.803, "CNNC_torsion": 7.088, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.86],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.81]", "interBase_angle": 6.127, "planarity": 0.132, "simple_Shear": -0.134, "simple_Stretch": -0.221, "simple_Buckle": -3.531, "simple_Propeller": 5.008, "bp_simpleParams": [ -0.134, -0.221, -0.634, -3.531, 5.008, -2.596 ], "bp_params": [ -0.132, -0.223, -0.634, -3.577, 4.975, -2.597 ], "frame": { "rmsd": null, "origin": [ 169.214, 263.274, 157.341 ], "x_axis": [ 0.340, 0.400, -0.851 ], "y_axis": [ -0.867, -0.217, -0.449 ], "z_axis": [ -0.364, 0.890, 0.273 ], "quaternion": [ 0.591, -0.567, 0.206, 0.536 ] } }, { "index": 168, "nt1": "///A/304", "nt2": "///A/411", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": 169.810, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 31.827, "chi2": -156.722, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 77.851, "C1C1_dist": 10.749, "N1N9_dist": 9.348, "C6C8_dist": 9.353, "CNNC_torsion": 109.192, "hbonds_num": 1, "hbonds_desc": "N7-N2(amino)[2.89]", "interBase_angle": 42.623, "planarity": 0.644, "simple_Shear": -7.023, "simple_Stretch": 3.898, "simple_Buckle": 34.070, "simple_Propeller": -25.612, "bp_simpleParams": [ -7.023, 3.898, -1.902, 34.070, -25.612, -41.465 ], "bp_params": [ -7.373, -3.188, -1.902, 41.000, 11.648, -39.251 ], "frame": { "rmsd": null, "origin": [ 166.582, 266.428, 154.841 ], "x_axis": [ -0.476, 0.056, -0.878 ], "y_axis": [ -0.636, -0.711, 0.300 ], "z_axis": [ -0.608, 0.701, 0.374 ], "quaternion": [ 0.216, -0.464, 0.313, 0.800 ] } }, { "index": 169, "nt1": "///A/304", "nt2": "///A/414", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 169.810, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.871, "chi2": -166.893, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.132, "C1C1_dist": 10.745, "N1N9_dist": 8.871, "C6C8_dist": 9.767, "CNNC_torsion": 4.859, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 4.833, "planarity": 0.186, "simple_Shear": -0.195, "simple_Stretch": -0.279, "simple_Buckle": -2.135, "simple_Propeller": -4.335, "bp_simpleParams": [ -0.195, -0.279, -0.832, -2.135, -4.335, -0.437 ], "bp_params": [ -0.191, -0.281, -0.832, -2.075, -4.364, -0.437 ], "frame": { "rmsd": null, "origin": [ 169.631, 267.026, 157.207 ], "x_axis": [ -0.115, 0.079, -0.990 ], "y_axis": [ -0.918, -0.389, 0.075 ], "z_axis": [ -0.379, 0.918, 0.118 ], "quaternion": [ 0.392, -0.538, 0.390, 0.637 ] } }, { "index": 170, "nt1": "///A/305", "nt2": "///A/413", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 172.464, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 55.350, "chi2": -166.364, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.053, "C1C1_dist": 10.521, "N1N9_dist": 8.795, "C6C8_dist": 9.716, "CNNC_torsion": -1.723, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.94],N1-N3(imino)[2.83]", "interBase_angle": 22.225, "planarity": 0.249, "simple_Shear": 0.133, "simple_Stretch": -0.057, "simple_Buckle": -21.220, "simple_Propeller": -6.608, "bp_simpleParams": [ 0.133, -0.057, -0.399, -21.220, -6.608, 0.128 ], "bp_params": [ 0.132, -0.061, -0.399, -21.386, -6.049, 0.126 ], "frame": { "rmsd": null, "origin": [ 169.268, 271.029, 156.992 ], "x_axis": [ -0.610, -0.258, -0.749 ], "y_axis": [ -0.621, -0.431, 0.654 ], "z_axis": [ -0.492, 0.865, 0.103 ], "quaternion": [ 0.124, -0.424, 0.519, 0.732 ] } }, { "index": 171, "nt1": "///A/306", "nt2": "///A/410", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.985, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.210, "chi2": 178.130, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 46.415, "C1C1_dist": 10.876, "N1N9_dist": 8.920, "C6C8_dist": 9.746, "CNNC_torsion": -17.705, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.85]", "interBase_angle": 14.153, "planarity": 0.207, "simple_Shear": 0.227, "simple_Stretch": -0.257, "simple_Buckle": 4.379, "simple_Propeller": -13.459, "bp_simpleParams": [ 0.227, -0.257, 0.455, 4.379, -13.459, -4.160 ], "bp_params": [ 0.223, -0.261, 0.455, 4.153, -13.530, -4.186 ], "frame": { "rmsd": null, "origin": [ 163.872, 271.607, 155.871 ], "x_axis": [ -0.393, -0.864, 0.315 ], "y_axis": [ 0.597, 0.021, 0.802 ], "z_axis": [ -0.699, 0.503, 0.508 ], "quaternion": [ 0.533, 0.140, -0.476, -0.685 ] } }, { "index": 172, "nt1": "///A/306", "nt2": "///A/412", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm-W", "intra_chain": true, "chi1": -168.985, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 103.660, "chi2": 178.030, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 18.642, "C1C1_dist": 9.768, "N1N9_dist": 8.777, "C6C8_dist": 9.467, "CNNC_torsion": 28.777, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.80]", "interBase_angle": 34.096, "planarity": 0.418, "simple_Shear": 7.024, "simple_Stretch": 2.733, "simple_Buckle": -33.518, "simple_Propeller": 6.250, "bp_simpleParams": [ 7.024, 2.733, 0.988, -33.518, 6.250, 20.026 ], "bp_params": [ 6.897, -3.038, 0.988, -19.405, 28.035, 20.356 ], "frame": { "rmsd": null, "origin": [ 166.956, 273.349, 156.295 ], "x_axis": [ -0.738, -0.618, 0.270 ], "y_axis": [ 0.352, -0.011, 0.936 ], "z_axis": [ -0.576, 0.786, 0.226 ], "quaternion": [ -0.345, -0.109, 0.612, 0.703 ] } }, { "index": 173, "nt1": "///A/307", "nt2": "///A/409", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.560, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.906, "chi2": -164.307, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.056, "C1C1_dist": 10.305, "N1N9_dist": 8.657, "C6C8_dist": 9.654, "CNNC_torsion": 6.671, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.91],N1-N3(imino)[2.76]", "interBase_angle": 2.726, "planarity": 0.196, "simple_Shear": 0.026, "simple_Stretch": -0.337, "simple_Buckle": -2.135, "simple_Propeller": -1.695, "bp_simpleParams": [ 0.026, -0.337, -0.964, -2.135, -1.695, 2.251 ], "bp_params": [ 0.023, -0.337, -0.964, -2.148, -1.679, 2.251 ], "frame": { "rmsd": null, "origin": [ 160.304, 273.532, 156.107 ], "x_axis": [ -0.061, -0.825, 0.562 ], "y_axis": [ 0.712, 0.358, 0.604 ], "z_axis": [ -0.699, 0.437, 0.565 ], "quaternion": [ 0.682, 0.061, -0.462, -0.563 ] } }, { "index": 174, "nt1": "///A/308", "nt2": "///A/408", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.000, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.321, "chi2": 174.106, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.498, "C1C1_dist": 10.603, "N1N9_dist": 8.889, "C6C8_dist": 9.828, "CNNC_torsion": 9.571, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 4.008, "planarity": 0.156, "simple_Shear": 0.193, "simple_Stretch": -0.226, "simple_Buckle": 3.460, "simple_Propeller": 2.023, "bp_simpleParams": [ 0.193, -0.226, -0.785, 3.460, 2.023, 0.001 ], "bp_params": [ 0.189, -0.228, -0.785, 3.489, 1.972, 0.001 ], "frame": { "rmsd": null, "origin": [ 156.962, 273.665, 157.227 ], "x_axis": [ 0.372, -0.497, 0.784 ], "y_axis": [ 0.641, 0.749, 0.171 ], "z_axis": [ -0.672, 0.438, 0.597 ], "quaternion": [ 0.824, -0.081, -0.441, -0.345 ] } }, { "index": 175, "nt1": "///A/309", "nt2": "///A/407", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 176.352, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.763, "chi2": -162.764, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.158, "C1C1_dist": 10.460, "N1N9_dist": 8.706, "C6C8_dist": 9.681, "CNNC_torsion": 3.875, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.73],O4(carbonyl)-N6(amino)[2.88]", "interBase_angle": 1.173, "planarity": 0.109, "simple_Shear": 0.025, "simple_Stretch": -0.270, "simple_Buckle": -0.043, "simple_Propeller": -1.173, "bp_simpleParams": [ 0.025, -0.270, -0.495, -0.043, -1.173, 1.219 ], "bp_params": [ 0.025, -0.270, -0.495, -0.040, -1.173, 1.219 ], "frame": { "rmsd": null, "origin": [ 153.496, 273.270, 159.424 ], "x_axis": [ 0.678, -0.132, 0.723 ], "y_axis": [ 0.388, 0.900, -0.199 ], "z_axis": [ -0.624, 0.416, 0.662 ], "quaternion": [ 0.900, -0.171, -0.374, -0.145 ] } }, { "index": 176, "nt1": "///A/310", "nt2": "///A/406", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 168.390, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.317, "chi2": -167.892, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.158, "C1C1_dist": 10.656, "N1N9_dist": 8.868, "C6C8_dist": 9.815, "CNNC_torsion": 2.939, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.67],N3-N1(imino)[2.84],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 6.920, "planarity": 0.082, "simple_Shear": 0.175, "simple_Stretch": -0.185, "simple_Buckle": 6.900, "simple_Propeller": 0.530, "bp_simpleParams": [ 0.175, -0.185, -0.232, 6.900, 0.530, 0.705 ], "bp_params": [ 0.172, -0.188, -0.232, 6.906, 0.436, 0.704 ], "frame": { "rmsd": null, "origin": [ 151.804, 272.985, 162.255 ], "x_axis": [ 0.896, 0.264, 0.356 ], "y_axis": [ -0.050, 0.859, -0.510 ], "z_axis": [ -0.440, 0.439, 0.783 ], "quaternion": [ 0.941, -0.252, -0.212, 0.084 ] } }, { "index": 177, "nt1": "///A/311", "nt2": "///A/405", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.140, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 82.458, "chi2": -148.284, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.455, "C1C1_dist": 8.373, "N1N9_dist": 7.257, "C6C8_dist": 8.768, "CNNC_torsion": -21.720, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N3(imino)[2.91],N3(imino)-O4(carbonyl)[3.42]", "interBase_angle": 23.443, "planarity": 0.309, "simple_Shear": 2.861, "simple_Stretch": -0.615, "simple_Buckle": 17.914, "simple_Propeller": -15.121, "bp_simpleParams": [ 2.861, -0.615, 0.599, 17.914, -15.121, 23.800 ], "bp_params": [ 2.571, -1.397, 0.599, 12.940, -19.548, 23.995 ], "frame": { "rmsd": null, "origin": [ 151.226, 273.457, 165.300 ], "x_axis": [ 0.749, 0.647, -0.142 ], "y_axis": [ -0.559, 0.503, -0.659 ], "z_axis": [ -0.355, 0.573, 0.739 ], "quaternion": [ 0.865, -0.356, -0.062, 0.349 ] } }, { "index": 178, "nt1": "///A/316", "nt2": "///A/404", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.839, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.715, "chi2": -175.269, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.480, "C1C1_dist": 10.517, "N1N9_dist": 8.749, "C6C8_dist": 9.644, "CNNC_torsion": 8.611, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.82],N1(imino)-N3[2.84],N2(amino)-O2(carbonyl)[2.70]", "interBase_angle": 13.996, "planarity": 0.217, "simple_Shear": -0.146, "simple_Stretch": -0.360, "simple_Buckle": -13.883, "simple_Propeller": -1.774, "bp_simpleParams": [ -0.146, -0.360, -1.148, -13.883, -1.774, -0.730 ], "bp_params": [ -0.143, -0.361, -1.148, -13.868, -1.889, -0.725 ], "frame": { "rmsd": null, "origin": [ 143.420, 265.225, 176.575 ], "x_axis": [ -0.311, 0.384, 0.869 ], "y_axis": [ -0.938, 0.021, -0.345 ], "z_axis": [ -0.150, -0.923, 0.354 ], "quaternion": [ 0.516, 0.280, -0.495, 0.641 ] } }, { "index": 179, "nt1": "///A/317", "nt2": "///A/403", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.364, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.921, "chi2": -153.410, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.506, "C1C1_dist": 10.601, "N1N9_dist": 8.895, "C6C8_dist": 9.833, "CNNC_torsion": 7.641, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 10.137, "planarity": 0.146, "simple_Shear": -0.113, "simple_Stretch": -0.182, "simple_Buckle": -9.123, "simple_Propeller": 4.418, "bp_simpleParams": [ -0.113, -0.182, -0.685, -9.123, 4.418, -0.026 ], "bp_params": [ -0.111, -0.183, -0.685, -9.164, 4.334, -0.026 ], "frame": { "rmsd": null, "origin": [ 143.823, 262.521, 178.512 ], "x_axis": [ -0.714, 0.393, 0.579 ], "y_axis": [ -0.666, -0.129, -0.734 ], "z_axis": [ -0.214, -0.911, 0.354 ], "quaternion": [ 0.357, 0.123, -0.555, 0.741 ] } }, { "index": 180, "nt1": "///A/318", "nt2": "///A/402", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.469, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.062, "chi2": -161.055, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.417, "C1C1_dist": 10.426, "N1N9_dist": 8.766, "C6C8_dist": 9.774, "CNNC_torsion": 4.937, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.99],N1-N3(imino)[2.78]", "interBase_angle": 6.231, "planarity": 0.104, "simple_Shear": 0.065, "simple_Stretch": -0.166, "simple_Buckle": -0.227, "simple_Propeller": 6.227, "bp_simpleParams": [ 0.065, -0.166, -0.345, -0.227, 6.227, 2.417 ], "bp_params": [ 0.063, -0.167, -0.345, -0.156, 6.229, 2.421 ], "frame": { "rmsd": null, "origin": [ 143.410, 260.208, 180.774 ], "x_axis": [ -0.934, 0.356, 0.038 ], "y_axis": [ -0.154, -0.306, -0.939 ], "z_axis": [ -0.323, -0.883, 0.341 ], "quaternion": [ 0.159, -0.089, -0.567, 0.803 ] } }, { "index": 181, "nt1": "///A/319", "nt2": "///A/326", "bp": "G+A", "name": "--", "Saenger": "10-X", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -157.271, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 112.621, "chi2": 175.923, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 11.426, "C1C1_dist": 9.487, "N1N9_dist": 8.748, "C6C8_dist": 9.817, "CNNC_torsion": 150.437, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[2.55],N2(amino)-N1[2.68],N3-N6(amino)[3.11]", "interBase_angle": 15.414, "planarity": 0.190, "simple_Shear": 2.648, "simple_Stretch": 4.259, "simple_Buckle": -0.226, "simple_Propeller": -15.412, "bp_simpleParams": [ 2.648, 4.259, 0.323, -0.226, -15.412, -77.577 ], "bp_params": [ 2.700, -4.226, 0.323, -13.807, 6.852, -77.270 ], "frame": { "rmsd": null, "origin": [ 144.457, 257.386, 183.569 ], "x_axis": [ -0.504, -0.207, -0.838 ], "y_axis": [ 0.693, -0.677, -0.249 ], "z_axis": [ -0.516, -0.706, 0.485 ], "quaternion": [ -0.276, -0.415, -0.292, 0.816 ] } }, { "index": 182, "nt1": "///A/319", "nt2": "///A/401", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.271, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.981, "chi2": -172.724, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.775, "C1C1_dist": 10.720, "N1N9_dist": 8.899, "C6C8_dist": 9.791, "CNNC_torsion": 3.166, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 11.141, "planarity": 0.200, "simple_Shear": -0.146, "simple_Stretch": -0.186, "simple_Buckle": 10.677, "simple_Propeller": 3.180, "bp_simpleParams": [ -0.146, -0.186, -0.351, 10.677, 3.180, -1.484 ], "bp_params": [ -0.144, -0.187, -0.351, 10.652, 3.265, -1.479 ], "frame": { "rmsd": null, "origin": [ 142.130, 258.243, 182.990 ], "x_axis": [ -0.848, 0.209, -0.486 ], "y_axis": [ 0.341, -0.486, -0.804 ], "z_axis": [ -0.404, -0.848, 0.341 ], "quaternion": [ -0.041, -0.272, -0.505, 0.818 ] } }, { "index": 183, "nt1": "///A/320", "nt2": "///A/327", "bp": "U+G", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -160.447, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 36.511, "chi2": -152.774, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.201, "C1C1_dist": 10.129, "N1N9_dist": 8.054, "C6C8_dist": 6.866, "CNNC_torsion": 18.445, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)*N7[3.03]", "interBase_angle": 3.814, "planarity": 0.198, "simple_Shear": -5.820, "simple_Stretch": 2.507, "simple_Buckle": 3.814, "simple_Propeller": -0.041, "bp_simpleParams": [ -5.820, 2.507, -1.192, 3.814, -0.041, -92.998 ], "bp_params": [ -3.253, 5.439, -1.192, 3.069, -2.265, -92.989 ], "frame": { "rmsd": null, "origin": [ 143.228, 255.573, 188.539 ], "x_axis": [ -0.624, -0.103, -0.775 ], "y_axis": [ 0.658, -0.604, -0.449 ], "z_axis": [ -0.421, -0.790, 0.445 ], "quaternion": [ -0.233, -0.366, -0.379, 0.817 ] } }, { "index": 184, "nt1": "///A/325", "nt2": "///A/402", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": -171.961, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 33.154, "chi2": -161.055, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 135.292, "C1C1_dist": 9.811, "N1N9_dist": 9.628, "C6C8_dist": 10.926, "CNNC_torsion": 6.212, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.88],N1-O2'(hydroxyl)[3.30]", "interBase_angle": 25.685, "planarity": 0.289, "simple_Shear": -5.738, "simple_Stretch": 4.902, "simple_Buckle": 23.284, "simple_Propeller": -10.844, "bp_simpleParams": [ -5.738, 4.902, 0.228, 23.284, -10.844, 63.273 ], "bp_params": [ -7.543, -0.245, 0.228, 24.479, 7.781, 62.222 ], "frame": { "rmsd": null, "origin": [ 146.604, 259.359, 182.588 ], "x_axis": [ -0.878, 0.171, -0.447 ], "y_axis": [ 0.268, -0.600, -0.754 ], "z_axis": [ -0.397, -0.782, 0.481 ], "quaternion": [ -0.028, -0.246, -0.446, 0.860 ] } }, { "index": 185, "nt1": "///A/327", "nt2": "///A/400", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.774, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.895, "chi2": 178.651, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 70.300, "C1C1_dist": 9.641, "N1N9_dist": 8.261, "C6C8_dist": 9.505, "CNNC_torsion": -6.978, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.99],N1(imino)-O2(carbonyl)[2.38],N2(amino)-O2(carbonyl)[2.24]", "interBase_angle": 6.442, "planarity": 0.110, "simple_Shear": -1.599, "simple_Stretch": -0.289, "simple_Buckle": -4.642, "simple_Propeller": -4.466, "bp_simpleParams": [ -1.599, -0.289, 0.261, -4.642, -4.466, 13.801 ], "bp_params": [ -1.535, -0.534, 0.261, -3.892, -5.133, 13.807 ], "frame": { "rmsd": null, "origin": [ 140.447, 256.261, 188.058 ], "x_axis": [ -0.028, -0.402, -0.915 ], "y_axis": [ 0.894, -0.421, 0.157 ], "z_axis": [ -0.448, -0.813, 0.372 ], "quaternion": [ -0.480, -0.505, -0.243, 0.675 ] } }, { "index": 186, "nt1": "///A/328", "nt2": "///A/399", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.665, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.139, "chi2": -171.962, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.440, "C1C1_dist": 10.735, "N1N9_dist": 8.929, "C6C8_dist": 9.846, "CNNC_torsion": -1.682, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 3.507, "planarity": 0.039, "simple_Shear": -0.208, "simple_Stretch": -0.165, "simple_Buckle": -3.059, "simple_Propeller": -1.715, "bp_simpleParams": [ -0.208, -0.165, -0.104, -3.059, -1.715, -0.037 ], "bp_params": [ -0.205, -0.168, -0.104, -3.033, -1.762, -0.037 ], "frame": { "rmsd": null, "origin": [ 137.579, 254.543, 189.241 ], "x_axis": [ 0.459, -0.576, -0.676 ], "y_axis": [ 0.736, -0.179, 0.652 ], "z_axis": [ -0.497, -0.797, 0.342 ], "quaternion": [ 0.637, 0.569, 0.070, -0.516 ] } }, { "index": 187, "nt1": "///A/329", "nt2": "///A/398", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 174.046, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.393, "chi2": -165.721, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.255, "C1C1_dist": 10.453, "N1N9_dist": 8.778, "C6C8_dist": 9.769, "CNNC_torsion": 2.273, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.95],N1-N3(imino)[2.78]", "interBase_angle": 4.224, "planarity": 0.056, "simple_Shear": -0.013, "simple_Stretch": -0.169, "simple_Buckle": -4.224, "simple_Propeller": 0.022, "bp_simpleParams": [ -0.013, -0.169, -0.263, -4.224, 0.022, 1.621 ], "bp_params": [ -0.013, -0.169, -0.263, -4.224, 0.039, 1.620 ], "frame": { "rmsd": null, "origin": [ 134.837, 252.071, 188.867 ], "x_axis": [ 0.779, -0.591, -0.211 ], "y_axis": [ 0.366, 0.154, 0.918 ], "z_axis": [ -0.510, -0.792, 0.336 ], "quaternion": [ 0.753, 0.567, -0.099, -0.318 ] } }, { "index": 188, "nt1": "///A/330", "nt2": "///A/397", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 170.902, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.536, "chi2": -167.155, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.126, "C1C1_dist": 10.763, "N1N9_dist": 8.899, "C6C8_dist": 9.782, "CNNC_torsion": -6.007, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.92],N1-N3(imino)[2.85]", "interBase_angle": 1.388, "planarity": 0.080, "simple_Shear": -0.043, "simple_Stretch": -0.149, "simple_Buckle": -1.258, "simple_Propeller": 0.586, "bp_simpleParams": [ -0.043, -0.149, 0.319, -1.258, 0.586, -1.551 ], "bp_params": [ -0.043, -0.149, 0.319, -1.258, 0.587, -1.550 ], "frame": { "rmsd": null, "origin": [ 132.612, 249.042, 188.453 ], "x_axis": [ 0.865, -0.405, 0.295 ], "y_axis": [ -0.099, 0.438, 0.894 ], "z_axis": [ -0.491, -0.803, 0.339 ], "quaternion": [ 0.813, 0.522, -0.242, -0.094 ] } }, { "index": 189, "nt1": "///A/331", "nt2": "///A/396", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 175.085, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.449, "chi2": 171.489, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.817, "C1C1_dist": 10.706, "N1N9_dist": 8.872, "C6C8_dist": 9.803, "CNNC_torsion": -4.390, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.68],N3-N1(imino)[2.84],N4(amino)-O6(carbonyl)[2.88]", "interBase_angle": 1.840, "planarity": 0.103, "simple_Shear": 0.133, "simple_Stretch": -0.214, "simple_Buckle": 1.811, "simple_Propeller": 0.322, "bp_simpleParams": [ 0.133, -0.214, 0.378, 1.811, 0.322, 0.638 ], "bp_params": [ 0.131, -0.215, 0.378, 1.814, 0.306, 0.638 ], "frame": { "rmsd": null, "origin": [ 132.218, 245.309, 188.211 ], "x_axis": [ 0.649, -0.044, 0.760 ], "y_axis": [ -0.607, 0.572, 0.551 ], "z_axis": [ -0.459, -0.819, 0.345 ], "quaternion": [ 0.801, 0.428, -0.380, 0.176 ] } }, { "index": 190, "nt1": "///A/332", "nt2": "///A/395", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.382, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.395, "chi2": -169.911, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.064, "C1C1_dist": 10.658, "N1N9_dist": 8.912, "C6C8_dist": 9.858, "CNNC_torsion": -2.748, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 9.544, "planarity": 0.109, "simple_Shear": -0.179, "simple_Stretch": -0.152, "simple_Buckle": -7.269, "simple_Propeller": -6.185, "bp_simpleParams": [ -0.179, -0.152, -0.393, -7.269, -6.185, 0.771 ], "bp_params": [ -0.177, -0.154, -0.393, -7.198, -6.268, 0.770 ], "frame": { "rmsd": null, "origin": [ 132.352, 241.895, 188.934 ], "x_axis": [ 0.326, 0.562, 0.760 ], "y_axis": [ -0.926, 0.351, 0.138 ], "z_axis": [ -0.190, -0.749, 0.635 ], "quaternion": [ 0.760, 0.292, -0.312, 0.489 ] } }, { "index": 191, "nt1": "///A/333", "nt2": "///A/394", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.426, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.514, "chi2": -140.773, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.558, "C1C1_dist": 10.245, "N1N9_dist": 8.663, "C6C8_dist": 9.673, "CNNC_torsion": 6.598, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.96],N1-N3(imino)[2.77]", "interBase_angle": 9.999, "planarity": 0.196, "simple_Shear": 0.092, "simple_Stretch": -0.288, "simple_Buckle": -9.724, "simple_Propeller": -2.331, "bp_simpleParams": [ 0.092, -0.288, -1.051, -9.724, -2.331, 3.157 ], "bp_params": [ 0.088, -0.289, -1.051, -9.759, -2.179, 3.146 ], "frame": { "rmsd": null, "origin": [ 133.070, 238.520, 190.999 ], "x_axis": [ -0.138, 0.655, 0.743 ], "y_axis": [ -0.967, 0.074, -0.245 ], "z_axis": [ -0.216, -0.752, 0.623 ], "quaternion": [ 0.624, 0.203, -0.384, 0.649 ] } }, { "index": 192, "nt1": "///A/334", "nt2": "///A/393", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 169.488, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 34.237, "chi2": -179.894, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 77.105, "C1C1_dist": 10.194, "N1N9_dist": 8.666, "C6C8_dist": 9.612, "CNNC_torsion": 2.234, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)*O2(carbonyl)[2.53],O6(carbonyl)-N3(imino)[2.98],N1(imino)-O2(carbonyl)[2.74]", "unusual_base2base_hbonds": 1, "interBase_angle": 7.871, "planarity": 0.136, "simple_Shear": -3.829, "simple_Stretch": 0.378, "simple_Buckle": -7.845, "simple_Propeller": -0.647, "bp_simpleParams": [ -3.829, 0.378, -0.755, -7.845, -0.647, 5.633 ], "bp_params": [ -3.687, -1.100, -0.755, -7.016, -3.568, 5.625 ], "frame": { "rmsd": null, "origin": [ 133.538, 237.196, 194.765 ], "x_axis": [ -0.316, 0.798, 0.513 ], "y_axis": [ -0.867, -0.023, -0.499 ], "z_axis": [ -0.386, -0.602, 0.699 ], "quaternion": [ 0.583, 0.044, -0.386, 0.714 ] } }, { "index": 193, "nt1": "///A/335", "nt2": "///A/392", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.447, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.480, "chi2": -170.627, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.901, "C1C1_dist": 10.581, "N1N9_dist": 8.877, "C6C8_dist": 9.827, "CNNC_torsion": 6.662, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 6.792, "planarity": 0.122, "simple_Shear": -0.154, "simple_Stretch": -0.194, "simple_Buckle": -5.952, "simple_Propeller": 3.272, "bp_simpleParams": [ -0.154, -0.194, -0.627, -5.952, 3.272, 0.317 ], "bp_params": [ -0.152, -0.195, -0.627, -5.992, 3.198, 0.316 ], "frame": { "rmsd": null, "origin": [ 133.677, 235.327, 197.899 ], "x_axis": [ -0.833, 0.551, -0.044 ], "y_axis": [ -0.359, -0.600, -0.715 ], "z_axis": [ -0.420, -0.580, 0.698 ], "quaternion": [ 0.257, -0.131, -0.366, 0.885 ] } }, { "index": 194, "nt1": "///A/336", "nt2": "///A/391", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.451, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.429, "chi2": -163.636, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.860, "C1C1_dist": 10.489, "N1N9_dist": 8.846, "C6C8_dist": 9.841, "CNNC_torsion": 2.987, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.84],O4(carbonyl)-N6(amino)[3.02]", "interBase_angle": 5.255, "planarity": 0.069, "simple_Shear": -0.013, "simple_Stretch": -0.089, "simple_Buckle": 3.210, "simple_Propeller": 4.161, "bp_simpleParams": [ -0.013, -0.089, 0.020, 3.210, 4.161, 2.308 ], "bp_params": [ -0.013, -0.089, 0.020, 3.185, 4.181, 2.309 ], "frame": { "rmsd": null, "origin": [ 131.914, 234.624, 201.010 ], "x_axis": [ -0.891, 0.189, -0.412 ], "y_axis": [ 0.114, -0.786, -0.607 ], "z_axis": [ -0.439, -0.588, 0.679 ], "quaternion": [ 0.020, -0.232, -0.326, 0.916 ] } }, { "index": 195, "nt1": "///A/338", "nt2": "///A/387", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.314, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.885, "chi2": -178.568, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.728, "C1C1_dist": 10.864, "N1N9_dist": 8.960, "C6C8_dist": 9.835, "CNNC_torsion": -0.425, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.89],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 3.312, "planarity": 0.078, "simple_Shear": -0.201, "simple_Stretch": -0.177, "simple_Buckle": -1.745, "simple_Propeller": -2.815, "bp_simpleParams": [ -0.201, -0.177, -0.351, -1.745, -2.815, -1.353 ], "bp_params": [ -0.198, -0.180, -0.351, -1.703, -2.841, -1.353 ], "frame": { "rmsd": null, "origin": [ 121.449, 227.455, 197.197 ], "x_axis": [ 0.539, -0.327, -0.777 ], "y_axis": [ 0.611, -0.483, 0.627 ], "z_axis": [ -0.580, -0.812, -0.061 ], "quaternion": [ 0.499, 0.722, 0.099, -0.470 ] } }, { "index": 196, "nt1": "///A/339", "nt2": "///A/386", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 169.834, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.551, "chi2": 179.204, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 46.610, "C1C1_dist": 10.995, "N1N9_dist": 9.003, "C6C8_dist": 9.770, "CNNC_torsion": 6.228, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.86],N1-N3(imino)[2.92]", "interBase_angle": 8.998, "planarity": 0.156, "simple_Shear": 0.161, "simple_Stretch": -0.141, "simple_Buckle": -8.981, "simple_Propeller": -0.555, "bp_simpleParams": [ 0.161, -0.141, -0.827, -8.981, -0.555, -6.206 ], "bp_params": [ 0.158, -0.145, -0.827, -8.991, -0.363, -6.187 ], "frame": { "rmsd": null, "origin": [ 117.546, 225.529, 195.828 ], "x_axis": [ 0.799, -0.488, -0.351 ], "y_axis": [ 0.298, -0.186, 0.936 ], "z_axis": [ -0.523, -0.852, -0.003 ], "quaternion": [ 0.634, 0.705, -0.068, -0.310 ] } }, { "index": 197, "nt1": "///A/340", "nt2": "///A/385", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.534, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.956, "chi2": 176.845, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 40.859, "C1C1_dist": 10.530, "N1N9_dist": 8.775, "C6C8_dist": 9.637, "CNNC_torsion": -0.353, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.80],N3(imino)-O6(carbonyl)[2.80]", "interBase_angle": 1.832, "planarity": 0.027, "simple_Shear": 1.967, "simple_Stretch": -0.165, "simple_Buckle": 0.066, "simple_Propeller": 1.831, "bp_simpleParams": [ 1.967, -0.165, -0.106, 0.066, 1.831, -2.840 ], "bp_params": [ 1.898, -0.540, -0.106, 0.417, 1.784, -2.840 ], "frame": { "rmsd": null, "origin": [ 115.589, 223.032, 194.698 ], "x_axis": [ 0.845, -0.446, 0.295 ], "y_axis": [ -0.231, 0.194, 0.953 ], "z_axis": [ -0.483, -0.874, 0.061 ], "quaternion": [ 0.725, 0.630, -0.269, -0.074 ] } }, { "index": 198, "nt1": "///A/341", "nt2": "///A/384", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -164.941, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 100.364, "chi2": -162.634, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 7.945, "C1C1_dist": 9.411, "N1N9_dist": 8.324, "C6C8_dist": 8.773, "CNNC_torsion": -118.399, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[2.90],N2(amino)-N7[2.91],N3-N6(amino)[3.08]", "interBase_angle": 5.820, "planarity": 0.130, "simple_Shear": 7.611, "simple_Stretch": 2.542, "simple_Buckle": 5.573, "simple_Propeller": 1.679, "bp_simpleParams": [ 7.611, 2.542, 0.539, 5.573, 1.679, -2.721 ], "bp_params": [ 6.789, -4.278, 0.539, 4.829, -3.249, -2.720 ], "frame": { "rmsd": null, "origin": [ 114.262, 219.955, 194.116 ], "x_axis": [ 0.366, -0.083, 0.927 ], "y_axis": [ -0.819, 0.445, 0.363 ], "z_axis": [ -0.442, -0.892, 0.095 ], "quaternion": [ 0.690, 0.455, -0.496, 0.267 ] } }, { "index": 199, "nt1": "///A/342", "nt2": "///A/382", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "tH.", "DSSR": "tM-.", "intra_chain": true, "chi1": -101.403, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 9.086, "chi2": -176.676, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 14.864, "C1C1_dist": 13.707, "N1N9_dist": 10.841, "C6C8_dist": 9.153, "CNNC_torsion": -75.474, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O6(carbonyl)[3.02]", "interBase_angle": 24.358, "planarity": 0.445, "simple_Shear": -0.939, "simple_Stretch": 3.794, "simple_Buckle": -20.180, "simple_Propeller": -13.642, "bp_simpleParams": [ -0.939, 3.794, -2.056, -20.180, -13.642, -112.126 ], "bp_params": [ -1.578, 3.576, -2.056, -17.579, -16.862, -112.070 ], "frame": { "rmsd": null, "origin": [ 112.569, 213.089, 192.327 ], "x_axis": [ -0.120, 0.230, 0.966 ], "y_axis": [ -0.984, 0.099, -0.146 ], "z_axis": [ -0.129, -0.968, 0.214 ], "quaternion": [ 0.546, 0.376, -0.501, 0.556 ] } }, { "index": 200, "nt1": "///A/342", "nt2": "///A/383", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "..W", "DSSR": "..-W", "intra_chain": true, "chi1": -101.403, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 22.136, "chi2": -168.004, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 26.579, "C1C1_dist": 12.485, "N1N9_dist": 9.824, "C6C8_dist": 9.271, "CNNC_torsion": -70.682, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.25]", "interBase_angle": 25.924, "planarity": 0.398, "simple_Shear": -1.372, "simple_Stretch": 1.062, "simple_Buckle": -13.693, "simple_Propeller": -22.013, "bp_simpleParams": [ -1.372, 1.062, 0.684, -13.693, -22.013, -68.453 ], "bp_params": [ -1.529, 0.820, 0.684, -9.760, -24.017, -69.445 ], "frame": { "rmsd": null, "origin": [ 111.664, 214.484, 191.643 ], "x_axis": [ 0.249, 0.194, 0.949 ], "y_axis": [ -0.960, 0.180, 0.215 ], "z_axis": [ -0.129, -0.964, 0.231 ], "quaternion": [ 0.644, 0.458, -0.418, 0.448 ] } }, { "index": 201, "nt1": "///A/343", "nt2": "///A/382", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "--", "DSSR": "--", "intra_chain": true, "chi1": -108.847, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 13.190, "chi2": -176.676, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 6.343, "C1C1_dist": 15.793, "N1N9_dist": 12.901, "C6C8_dist": 11.635, "CNNC_torsion": -82.403, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O6(carbonyl)[3.93]", "interBase_angle": 20.753, "planarity": 0.262, "simple_Shear": 0.379, "simple_Stretch": 4.723, "simple_Buckle": -3.031, "simple_Propeller": -20.531, "bp_simpleParams": [ 0.379, 4.723, 0.312, -3.031, -20.531, -90.807 ], "bp_params": [ 0.627, 4.697, 0.312, -4.076, -20.349, -91.679 ], "frame": { "rmsd": null, "origin": [ 111.765, 211.821, 193.256 ], "x_axis": [ -0.282, 0.186, 0.941 ], "y_axis": [ -0.959, -0.078, -0.272 ], "z_axis": [ 0.023, -0.980, 0.200 ], "quaternion": [ 0.458, 0.386, -0.501, 0.625 ] } }, { "index": 202, "nt1": "///A/344", "nt2": "///A/360", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -70.125, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 50.079, "chi2": -164.957, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.479, "C1C1_dist": 10.623, "N1N9_dist": 8.811, "C6C8_dist": 9.698, "CNNC_torsion": 7.835, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.84],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 7.680, "planarity": 0.205, "simple_Shear": -0.212, "simple_Stretch": -0.354, "simple_Buckle": -6.842, "simple_Propeller": -3.487, "bp_simpleParams": [ -0.212, -0.354, -1.049, -6.842, -3.487, -1.143 ], "bp_params": [ -0.206, -0.357, -1.049, -6.790, -3.589, -1.142 ], "frame": { "rmsd": null, "origin": [ 100.053, 200.399, 192.681 ], "x_axis": [ 0.812, -0.214, -0.544 ], "y_axis": [ 0.571, 0.490, 0.659 ], "z_axis": [ 0.126, -0.845, 0.519 ], "quaternion": [ 0.840, 0.448, 0.199, -0.234 ] } }, { "index": 203, "nt1": "///A/346", "nt2": "///A/359", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.460, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.017, "chi2": -167.299, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.436, "C1C1_dist": 10.552, "N1N9_dist": 8.752, "C6C8_dist": 9.672, "CNNC_torsion": -7.372, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.84],N1(imino)-N3[2.84],N2(amino)-O2(carbonyl)[2.71]", "interBase_angle": 4.811, "planarity": 0.231, "simple_Shear": -0.238, "simple_Stretch": -0.360, "simple_Buckle": -4.540, "simple_Propeller": 1.591, "bp_simpleParams": [ -0.238, -0.360, 0.811, -4.540, 1.591, -0.190 ], "bp_params": [ -0.231, -0.365, 0.811, -4.570, 1.504, -0.190 ], "frame": { "rmsd": null, "origin": [ 98.708, 196.030, 193.186 ], "x_axis": [ 0.979, -0.059, -0.196 ], "y_axis": [ 0.170, 0.766, 0.620 ], "z_axis": [ 0.114, -0.640, 0.760 ], "quaternion": [ 0.936, 0.337, 0.083, -0.061 ] } }, { "index": 204, "nt1": "///A/347", "nt2": "///A/358", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.925, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.271, "chi2": -164.739, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.221, "C1C1_dist": 10.646, "N1N9_dist": 8.863, "C6C8_dist": 9.788, "CNNC_torsion": -5.140, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 3.703, "planarity": 0.155, "simple_Shear": -0.222, "simple_Stretch": -0.242, "simple_Buckle": 0.219, "simple_Propeller": 3.696, "bp_simpleParams": [ -0.222, -0.242, 0.637, 0.219, 3.696, 0.425 ], "bp_params": [ -0.218, -0.245, 0.637, 0.155, 3.700, 0.420 ], "frame": { "rmsd": null, "origin": [ 99.251, 192.878, 194.416 ], "x_axis": [ 0.903, 0.413, 0.119 ], "y_axis": [ -0.383, 0.650, 0.656 ], "z_axis": [ 0.194, -0.638, 0.745 ], "quaternion": [ 0.908, 0.356, 0.021, 0.219 ] } }, { "index": 205, "nt1": "///A/348", "nt2": "///A/357", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.902, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.596, "chi2": 172.776, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 39.231, "C1C1_dist": 10.671, "N1N9_dist": 8.835, "C6C8_dist": 9.660, "CNNC_torsion": -2.321, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.84],N3(imino)-O6(carbonyl)[2.83]", "interBase_angle": 4.608, "planarity": 0.082, "simple_Shear": 2.056, "simple_Stretch": -0.106, "simple_Buckle": 4.112, "simple_Propeller": 2.080, "bp_simpleParams": [ 2.056, -0.106, 0.097, 4.112, 2.080, -3.877 ], "bp_params": [ 1.992, -0.519, 0.097, 4.447, 1.207, -3.875 ], "frame": { "rmsd": null, "origin": [ 101.487, 190.656, 195.949 ], "x_axis": [ 0.394, 0.742, 0.543 ], "y_axis": [ -0.873, 0.118, 0.472 ], "z_axis": [ 0.286, -0.660, 0.695 ], "quaternion": [ 0.743, 0.381, -0.086, 0.544 ] } }, { "index": 206, "nt1": "///A/349", "nt2": "///A/356", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.936, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.099, "chi2": -171.456, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 47.478, "C1C1_dist": 10.669, "N1N9_dist": 8.706, "C6C8_dist": 9.317, "CNNC_torsion": -4.053, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.06],N3-N1(imino)[2.74],N4(amino)-O6(carbonyl)[2.29]", "interBase_angle": 28.957, "planarity": 0.339, "simple_Shear": 0.152, "simple_Stretch": -0.341, "simple_Buckle": -28.614, "simple_Propeller": 4.443, "bp_simpleParams": [ 0.152, -0.341, 0.601, -28.614, 4.443, -12.715 ], "bp_params": [ 0.150, -0.342, 0.601, -28.595, 4.563, -12.334 ], "frame": { "rmsd": null, "origin": [ 105.243, 189.010, 197.785 ], "x_axis": [ -0.343, 0.835, 0.430 ], "y_axis": [ -0.842, -0.476, 0.254 ], "z_axis": [ 0.417, -0.275, 0.866 ], "quaternion": [ 0.512, 0.258, -0.006, 0.819 ] } }, { "index": 207, "nt1": "///A/350", "nt2": "///A/354", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -160.211, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 23.890, "chi2": -74.653, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 9.853, "C1C1_dist": 10.364, "N1N9_dist": 7.617, "C6C8_dist": 6.458, "CNNC_torsion": -171.834, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.78],N3(imino)-N7[3.06],O4(carbonyl)*N7[2.48]", "unusual_base2base_hbonds": 1, "interBase_angle": 8.844, "planarity": 0.116, "simple_Shear": 2.985, "simple_Stretch": 0.696, "simple_Buckle": -1.892, "simple_Propeller": 8.639, "bp_simpleParams": [ 2.985, 0.696, 0.644, -1.892, 8.639, -98.468 ], "bp_params": [ 2.958, -0.800, 0.644, 2.428, 8.504, -98.612 ], "frame": { "rmsd": null, "origin": [ 109.031, 187.728, 198.215 ], "x_axis": [ -0.870, -0.025, 0.492 ], "y_axis": [ -0.109, -0.964, -0.242 ], "z_axis": [ 0.480, -0.264, 0.836 ], "quaternion": [ 0.022, 0.254, -0.132, 0.958 ] } }, { "index": 208, "nt1": "///A/351", "nt2": "///A/374", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm-W", "intra_chain": true, "chi1": -166.657, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 114.873, "chi2": -77.033, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 23.001, "C1C1_dist": 9.886, "N1N9_dist": 9.202, "C6C8_dist": 10.195, "CNNC_torsion": 40.273, "hbonds_num": 1, "hbonds_desc": "N3-N6(amino)[3.11]", "interBase_angle": 33.521, "planarity": 0.410, "simple_Shear": 6.440, "simple_Stretch": 3.434, "simple_Buckle": -10.694, "simple_Propeller": 31.770, "bp_simpleParams": [ 6.440, 3.434, -0.207, -10.694, 31.770, 33.398 ], "bp_params": [ 7.001, -2.066, -0.207, 14.856, 30.050, 34.254 ], "frame": { "rmsd": null, "origin": [ 108.581, 187.850, 202.305 ], "x_axis": [ -0.827, 0.089, 0.555 ], "y_axis": [ -0.268, -0.930, -0.251 ], "z_axis": [ 0.494, -0.357, 0.793 ], "quaternion": [ 0.095, 0.279, -0.161, 0.942 ] } }, { "index": 209, "nt1": "///A/352", "nt2": "///A/373", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -143.401, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 79.049, "chi2": -115.584, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 69.553, "C1C1_dist": 7.840, "N1N9_dist": 7.590, "C6C8_dist": 9.723, "CNNC_torsion": 176.858, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N3[3.77]", "interBase_angle": 61.655, "planarity": 0.809, "simple_Shear": 7.288, "simple_Stretch": 4.591, "simple_Buckle": 59.302, "simple_Propeller": 16.870, "bp_simpleParams": [ 7.288, 4.591, -0.383, 59.302, 16.870, -165.775 ], "bp_params": [ -2.768, -8.157, -0.383, -36.571, -49.637, -166.254 ], "frame": { "rmsd": null, "origin": [ 116.011, 187.970, 208.088 ], "x_axis": [ -0.673, -0.611, 0.418 ], "y_axis": [ -0.295, 0.739, 0.605 ], "z_axis": [ -0.679, 0.284, -0.677 ], "quaternion": [ -0.312, -0.258, 0.879, 0.253 ] } }, { "index": 210, "nt1": "///A/361", "nt2": "///A/378", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.318, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.155, "chi2": -153.539, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.210, "C1C1_dist": 10.728, "N1N9_dist": 8.902, "C6C8_dist": 9.792, "CNNC_torsion": 3.500, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.86],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 4.483, "planarity": 0.108, "simple_Shear": -0.203, "simple_Stretch": -0.227, "simple_Buckle": -4.464, "simple_Propeller": -0.407, "bp_simpleParams": [ -0.203, -0.227, -0.589, -4.464, -0.407, -1.533 ], "bp_params": [ -0.199, -0.230, -0.589, -4.457, -0.476, -1.532 ], "frame": { "rmsd": null, "origin": [ 102.564, 204.214, 191.015 ], "x_axis": [ 0.510, -0.643, -0.571 ], "y_axis": [ -0.859, -0.350, -0.373 ], "z_axis": [ 0.040, 0.681, -0.731 ], "quaternion": [ -0.328, 0.805, -0.467, -0.165 ] } }, { "index": 211, "nt1": "///A/362", "nt2": "///A/377", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.230, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.153, "chi2": 170.060, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.127, "C1C1_dist": 10.724, "N1N9_dist": 8.896, "C6C8_dist": 9.797, "CNNC_torsion": 4.837, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 3.887, "planarity": 0.143, "simple_Shear": 0.214, "simple_Stretch": -0.238, "simple_Buckle": 3.778, "simple_Propeller": -0.917, "bp_simpleParams": [ 0.214, -0.238, -0.740, 3.778, -0.917, -0.582 ], "bp_params": [ 0.210, -0.242, -0.740, 3.763, -0.977, -0.582 ], "frame": { "rmsd": null, "origin": [ 104.250, 205.996, 188.787 ], "x_axis": [ -0.192, -0.731, -0.655 ], "y_axis": [ -0.979, 0.191, 0.073 ], "z_axis": [ 0.072, 0.655, -0.752 ], "quaternion": [ 0.249, -0.585, 0.731, 0.249 ] } }, { "index": 212, "nt1": "///A/363", "nt2": "///A/367", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.626, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.666, "chi2": 42.185, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 50.272, "C1C1_dist": 10.784, "N1N9_dist": 8.953, "C6C8_dist": 9.844, "CNNC_torsion": -8.982, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 5.155, "planarity": 0.107, "simple_Shear": 0.174, "simple_Stretch": -0.174, "simple_Buckle": -3.307, "simple_Propeller": -3.955, "bp_simpleParams": [ 0.174, -0.174, 0.497, -3.307, -3.955, -1.034 ], "bp_params": [ 0.172, -0.176, 0.497, -3.358, -3.911, -1.034 ], "frame": { "rmsd": null, "origin": [ 106.933, 208.456, 186.187 ], "x_axis": [ -0.597, -0.657, -0.460 ], "y_axis": [ -0.796, 0.416, 0.440 ], "z_axis": [ -0.098, 0.629, -0.771 ], "quaternion": [ 0.108, -0.435, 0.834, 0.320 ] } }, { "index": 213, "nt1": "///A/368", "nt2": "///A/382", "bp": "G-G", "name": "~Sheared", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -165.927, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 9.076, "chi2": -176.676, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 94.571, "C1C1_dist": 9.861, "N1N9_dist": 8.624, "C6C8_dist": 9.035, "CNNC_torsion": -103.205, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.91],O6(carbonyl)-O2'(hydroxyl)[3.21],O6(carbonyl)*N3[3.20]", "unusual_base2base_hbonds": 1, "interBase_angle": 13.496, "planarity": 0.205, "simple_Shear": -7.507, "simple_Stretch": 2.706, "simple_Buckle": -11.242, "simple_Propeller": 7.467, "bp_simpleParams": [ -7.507, 2.706, 0.242, -11.242, 7.467, -6.836 ], "bp_params": [ -6.915, -3.983, 0.242, -12.959, -3.769, -6.796 ], "frame": { "rmsd": null, "origin": [ 118.087, 211.871, 193.559 ], "x_axis": [ -0.857, 0.156, 0.490 ], "y_axis": [ -0.514, -0.215, -0.830 ], "z_axis": [ -0.024, -0.964, 0.265 ], "quaternion": [ 0.219, 0.153, -0.587, 0.764 ] } }, { "index": 214, "nt1": "///A/369", "nt2": "///A/381", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 177.602, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.941, "chi2": -154.071, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.430, "C1C1_dist": 10.812, "N1N9_dist": 9.003, "C6C8_dist": 9.874, "CNNC_torsion": -6.081, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.96],N1-N3(imino)[2.92]", "interBase_angle": 8.472, "planarity": 0.129, "simple_Shear": -0.030, "simple_Stretch": -0.048, "simple_Buckle": -7.608, "simple_Propeller": -3.728, "bp_simpleParams": [ -0.030, -0.048, 0.155, -7.608, -3.728, -2.539 ], "bp_params": [ -0.030, -0.048, 0.155, -7.623, -3.698, -2.535 ], "frame": { "rmsd": null, "origin": [ 118.665, 209.244, 195.639 ], "x_axis": [ -0.930, 0.067, -0.362 ], "y_axis": [ 0.331, -0.281, -0.901 ], "z_axis": [ -0.162, -0.957, 0.239 ], "quaternion": [ -0.084, -0.168, -0.594, 0.783 ] } }, { "index": 215, "nt1": "///A/370", "nt2": "///A/380", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.731, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.258, "chi2": -153.062, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.946, "C1C1_dist": 10.540, "N1N9_dist": 8.853, "C6C8_dist": 9.808, "CNNC_torsion": 3.600, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.86],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 7.651, "planarity": 0.115, "simple_Shear": -0.187, "simple_Stretch": -0.205, "simple_Buckle": -7.650, "simple_Propeller": 0.139, "bp_simpleParams": [ -0.187, -0.205, -0.612, -7.650, 0.139, 0.723 ], "bp_params": [ -0.184, -0.208, -0.612, -7.651, 0.029, 0.721 ], "frame": { "rmsd": null, "origin": [ 117.611, 206.182, 198.103 ], "x_axis": [ -0.626, -0.056, -0.778 ], "y_axis": [ 0.759, -0.277, -0.590 ], "z_axis": [ -0.182, -0.959, 0.216 ], "quaternion": [ -0.280, -0.330, -0.532, 0.728 ] } }, { "index": 216, "nt1": "///A/371", "nt2": "///A/379", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 176.071, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.021, "chi2": -164.278, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.183, "C1C1_dist": 10.849, "N1N9_dist": 8.956, "C6C8_dist": 9.801, "CNNC_torsion": 6.220, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.84]", "interBase_angle": 5.076, "planarity": 0.152, "simple_Shear": -0.141, "simple_Stretch": -0.232, "simple_Buckle": -4.817, "simple_Propeller": 1.600, "bp_simpleParams": [ -0.141, -0.232, -0.807, -4.817, 1.600, -2.832 ], "bp_params": [ -0.139, -0.233, -0.807, -4.831, 1.556, -2.830 ], "frame": { "rmsd": null, "origin": [ 115.408, 203.406, 199.204 ], "x_axis": [ -0.141, -0.127, -0.982 ], "y_axis": [ 0.972, -0.206, -0.113 ], "z_axis": [ -0.188, -0.970, 0.153 ], "quaternion": [ -0.449, -0.478, -0.442, 0.612 ] } }, { "index": 217, "nt1": "///A/372", "nt2": "///A/376", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -157.307, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 24.950, "chi2": -136.799, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 19.231, "C1C1_dist": 9.998, "N1N9_dist": 7.359, "C6C8_dist": 6.254, "CNNC_torsion": 160.556, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.02],N3(imino)-N7[2.95]", "interBase_angle": 5.325, "planarity": 0.216, "simple_Shear": 3.598, "simple_Stretch": 1.026, "simple_Buckle": -4.502, "simple_Propeller": -2.843, "bp_simpleParams": [ 3.598, 1.026, -0.998, -4.502, -2.843, -101.635 ], "bp_params": [ 3.516, -1.278, -0.998, -5.314, 0.337, -101.575 ], "frame": { "rmsd": null, "origin": [ 112.075, 200.914, 199.569 ], "x_axis": [ 0.964, -0.245, -0.108 ], "y_axis": [ 0.108, -0.012, 0.994 ], "z_axis": [ -0.245, -0.969, 0.015 ], "quaternion": [ 0.701, 0.700, -0.049, -0.126 ] } }, { "index": 218, "nt1": "///A/389", "nt2": "///A/390", "bp": "A+A", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -107.716, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 145.087, "chi2": 179.006, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 31.954, "C1C1_dist": 6.934, "N1N9_dist": 6.885, "C6C8_dist": 6.935, "CNNC_torsion": 10.130, "hbonds_num": 1, "hbonds_desc": "N3-N6(amino)[2.98]", "interBase_angle": 22.268, "planarity": 0.290, "simple_Shear": 0.016, "simple_Stretch": 6.667, "simple_Buckle": 7.112, "simple_Propeller": 21.101, "bp_simpleParams": [ 0.016, 6.667, -0.956, 7.112, 21.101, -2.680 ], "bp_params": [ 6.652, -0.448, -0.956, 20.621, -8.403, -2.645 ], "frame": { "rmsd": null, "origin": [ 130.802, 232.161, 202.970 ], "x_axis": [ -0.328, -0.482, -0.812 ], "y_axis": [ -0.740, 0.666, -0.096 ], "z_axis": [ 0.588, 0.569, -0.575 ], "quaternion": [ 0.437, -0.381, 0.802, 0.148 ] } }, { "index": 219, "nt1": "///A/418", "nt2": "///A/449", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": -132.854, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 21.827, "chi2": -113.874, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 9.409, "C1C1_dist": 10.863, "N1N9_dist": 8.088, "C6C8_dist": 6.236, "CNNC_torsion": 149.396, "hbonds_num": 2, "hbonds_desc": "N6(amino)-OP2[2.91],N6(amino)-N7[3.24]", "interBase_angle": 56.550, "planarity": 0.779, "simple_Shear": -7.071, "simple_Stretch": 0.378, "simple_Buckle": 1.446, "simple_Propeller": -56.532, "bp_simpleParams": [ -7.071, 0.378, 2.129, 1.446, -56.532, 160.647 ], "bp_params": [ 5.663, -4.252, 2.129, 30.379, 47.698, 161.524 ], "frame": { "rmsd": null, "origin": [ 184.012, 252.116, 159.274 ], "x_axis": [ 0.802, 0.485, -0.349 ], "y_axis": [ -0.540, 0.340, -0.770 ], "z_axis": [ -0.255, 0.806, 0.534 ], "quaternion": [ 0.818, -0.482, 0.029, 0.313 ] } }, { "index": 220, "nt1": "///A/419", "nt2": "///A/420", "bp": "G+U", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -87.553, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 137.467, "chi2": -165.560, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.611, "C1C1_dist": 7.248, "N1N9_dist": 7.568, "C6C8_dist": 7.493, "CNNC_torsion": 17.229, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O4(carbonyl)[3.89]", "interBase_angle": 12.403, "planarity": 0.333, "simple_Shear": 0.419, "simple_Stretch": 8.924, "simple_Buckle": -12.397, "simple_Propeller": -0.378, "bp_simpleParams": [ 0.419, 8.924, 1.672, -12.397, -0.378, 18.923 ], "bp_params": [ 8.608, 2.394, 1.672, -4.236, 11.658, 19.007 ], "frame": { "rmsd": null, "origin": [ 188.072, 250.374, 161.369 ], "x_axis": [ 0.882, 0.339, 0.328 ], "y_axis": [ -0.236, -0.287, 0.928 ], "z_axis": [ 0.409, -0.896, -0.173 ], "quaternion": [ 0.596, 0.765, 0.034, 0.241 ] } }, { "index": 221, "nt1": "///A/420", "nt2": "///A/448", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -165.560, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 23.762, "chi2": -176.561, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 20.781, "C1C1_dist": 9.906, "N1N9_dist": 7.259, "C6C8_dist": 6.125, "CNNC_torsion": 165.142, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.17],N3(imino)-N7[2.87]", "interBase_angle": 8.426, "planarity": 0.212, "simple_Shear": 3.671, "simple_Stretch": 1.281, "simple_Buckle": -6.499, "simple_Propeller": -5.363, "bp_simpleParams": [ 3.671, 1.281, -0.932, -6.499, -5.363, -105.343 ], "bp_params": [ 3.669, -1.287, -0.932, -8.425, -0.142, -105.193 ], "frame": { "rmsd": null, "origin": [ 182.953, 249.366, 157.581 ], "x_axis": [ 0.519, -0.038, 0.854 ], "y_axis": [ -0.764, -0.469, 0.444 ], "z_axis": [ 0.383, -0.883, -0.272 ], "quaternion": [ 0.441, 0.752, -0.267, 0.412 ] } }, { "index": 222, "nt1": "///A/420", "nt2": "///A/449", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -165.560, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.781, "chi2": -113.874, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 14.816, "C1C1_dist": 11.804, "N1N9_dist": 9.472, "C6C8_dist": 9.292, "CNNC_torsion": -71.472, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.39]", "interBase_angle": 29.275, "planarity": 0.471, "simple_Shear": 2.874, "simple_Stretch": 0.777, "simple_Buckle": -19.074, "simple_Propeller": -22.208, "bp_simpleParams": [ 2.874, 0.777, 1.899, -19.074, -22.208, -53.537 ], "bp_params": [ 2.965, -0.270, 1.899, -25.578, -14.240, -52.751 ], "frame": { "rmsd": null, "origin": [ 182.541, 250.308, 158.522 ], "x_axis": [ 0.762, 0.249, 0.598 ], "y_axis": [ -0.384, -0.569, 0.727 ], "z_axis": [ 0.521, -0.784, -0.338 ], "quaternion": [ 0.462, 0.817, -0.041, 0.342 ] } }, { "index": 223, "nt1": "///A/421", "nt2": "///A/447", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": 170.946, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 4.979, "chi2": 178.361, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 94.699, "C1C1_dist": 9.645, "N1N9_dist": 8.403, "C6C8_dist": 8.783, "CNNC_torsion": -149.866, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.73],N6(amino)-O2'(hydroxyl)[2.90],N6(amino)-N3[3.02]", "interBase_angle": 2.284, "planarity": 0.079, "simple_Shear": -7.533, "simple_Stretch": 2.482, "simple_Buckle": 1.986, "simple_Propeller": 1.128, "bp_simpleParams": [ -7.533, 2.482, 0.336, 1.986, 1.128, -7.195 ], "bp_params": [ -6.736, -4.187, 0.336, 0.409, 2.247, -7.197 ], "frame": { "rmsd": null, "origin": [ 187.485, 246.136, 160.976 ], "x_axis": [ 0.683, -0.056, 0.728 ], "y_axis": [ -0.723, -0.194, 0.663 ], "z_axis": [ 0.104, -0.979, -0.173 ], "quaternion": [ 0.574, 0.716, -0.272, 0.291 ] } }, { "index": 224, "nt1": "///A/422", "nt2": "///A/446", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.446, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.431, "chi2": 178.172, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.375, "C1C1_dist": 10.677, "N1N9_dist": 8.916, "C6C8_dist": 9.871, "CNNC_torsion": -3.467, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 4.652, "planarity": 0.093, "simple_Shear": 0.144, "simple_Stretch": -0.143, "simple_Buckle": 4.237, "simple_Propeller": -1.920, "bp_simpleParams": [ 0.144, -0.143, 0.213, 4.237, -1.920, 1.170 ], "bp_params": [ 0.143, -0.145, 0.213, 4.218, -1.962, 1.170 ], "frame": { "rmsd": null, "origin": [ 188.875, 243.193, 160.559 ], "x_axis": [ -0.384, -0.182, 0.905 ], "y_axis": [ -0.916, -0.049, -0.398 ], "z_axis": [ 0.117, -0.982, -0.148 ], "quaternion": [ -0.324, -0.451, 0.609, -0.567 ] } }, { "index": 225, "nt1": "///A/423", "nt2": "///A/445", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.726, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.790, "chi2": 178.317, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.825, "C1C1_dist": 10.736, "N1N9_dist": 8.893, "C6C8_dist": 9.789, "CNNC_torsion": -4.211, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.84],N1(imino)-N3[2.85],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 4.580, "planarity": 0.053, "simple_Shear": -0.122, "simple_Stretch": -0.209, "simple_Buckle": -2.972, "simple_Propeller": -3.485, "bp_simpleParams": [ -0.122, -0.209, -0.030, -2.972, -3.485, -1.277 ], "bp_params": [ -0.121, -0.210, -0.030, -2.945, -3.508, -1.277 ], "frame": { "rmsd": null, "origin": [ 191.472, 240.126, 161.372 ], "x_axis": [ -0.809, -0.138, 0.572 ], "y_axis": [ -0.585, 0.084, -0.807 ], "z_axis": [ 0.063, -0.987, -0.149 ], "quaternion": [ -0.178, -0.253, 0.714, -0.628 ] } }, { "index": 226, "nt1": "///A/424", "nt2": "///A/444", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 152.509, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 29.355, "chi2": -179.939, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 60.131, "C1C1_dist": 11.025, "N1N9_dist": 9.016, "C6C8_dist": 9.645, "CNNC_torsion": 4.562, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.77],N1(imino)-O2(carbonyl)[3.03]", "interBase_angle": 13.595, "planarity": 0.186, "simple_Shear": -2.703, "simple_Stretch": 0.091, "simple_Buckle": -2.903, "simple_Propeller": 13.281, "bp_simpleParams": [ -2.703, 0.091, -0.007, -2.903, 13.281, -10.521 ], "bp_params": [ -2.627, -0.643, -0.007, -6.374, 12.008, -10.563 ], "frame": { "rmsd": null, "origin": [ 191.930, 236.590, 162.196 ], "x_axis": [ -0.930, 0.198, 0.309 ], "y_axis": [ -0.267, 0.214, -0.940 ], "z_axis": [ -0.252, -0.957, -0.146 ], "quaternion": [ -0.186, -0.023, 0.757, -0.627 ] } }, { "index": 227, "nt1": "///A/425", "nt2": "///A/443", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -123.360, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 54.435, "chi2": -170.951, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.053, "C1C1_dist": 10.559, "N1N9_dist": 8.808, "C6C8_dist": 9.761, "CNNC_torsion": 14.918, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.71],N3-N1(imino)[2.82],N4(amino)-O6(carbonyl)[2.87]", "interBase_angle": 14.996, "planarity": 0.204, "simple_Shear": 0.232, "simple_Stretch": -0.239, "simple_Buckle": 2.863, "simple_Propeller": 14.720, "bp_simpleParams": [ 0.232, -0.239, -0.084, 2.863, 14.720, 0.948 ], "bp_params": [ 0.227, -0.244, -0.084, 3.150, 14.661, 0.955 ], "frame": { "rmsd": null, "origin": [ 190.387, 233.631, 163.481 ], "x_axis": [ -0.791, 0.402, -0.460 ], "y_axis": [ 0.487, -0.039, -0.872 ], "z_axis": [ -0.369, -0.915, -0.165 ], "quaternion": [ 0.033, 0.321, 0.692, -0.645 ] } }, { "index": 228, "nt1": "///A/426", "nt2": "///A/442", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -143.486, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.080, "chi2": -171.386, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.621, "C1C1_dist": 10.415, "N1N9_dist": 8.848, "C6C8_dist": 9.867, "CNNC_torsion": 6.728, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.86],N2(amino)-O2(carbonyl)[2.69]", "interBase_angle": 9.830, "planarity": 0.124, "simple_Shear": -0.149, "simple_Stretch": -0.155, "simple_Buckle": 2.928, "simple_Propeller": 9.384, "bp_simpleParams": [ -0.149, -0.155, 0.204, 2.928, 9.384, 3.065 ], "bp_params": [ -0.147, -0.157, 0.204, 2.826, 9.415, 3.074 ], "frame": { "rmsd": null, "origin": [ 187.456, 231.393, 163.675 ], "x_axis": [ -0.445, 0.409, -0.797 ], "y_axis": [ 0.787, -0.245, -0.566 ], "z_axis": [ -0.426, -0.879, -0.213 ], "quaternion": [ -0.156, -0.503, -0.594, 0.608 ] } }, { "index": 229, "nt1": "///A/427", "nt2": "///A/441", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.950, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.653, "chi2": 174.810, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.336, "C1C1_dist": 10.860, "N1N9_dist": 8.906, "C6C8_dist": 9.760, "CNNC_torsion": -0.567, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.81],N1(imino)-N3[2.84],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 3.425, "planarity": 0.038, "simple_Shear": -0.168, "simple_Stretch": -0.237, "simple_Buckle": 2.966, "simple_Propeller": 1.713, "bp_simpleParams": [ -0.168, -0.237, 0.110, 2.966, 1.713, -2.581 ], "bp_params": [ -0.165, -0.239, 0.110, 2.946, 1.747, -2.580 ], "frame": { "rmsd": null, "origin": [ 184.466, 229.416, 163.085 ], "x_axis": [ 0.065, 0.260, -0.963 ], "y_axis": [ 0.882, -0.467, -0.067 ], "z_axis": [ -0.467, -0.845, -0.260 ], "quaternion": [ 0.291, 0.669, 0.427, -0.534 ] } }, { "index": 230, "nt1": "///A/428", "nt2": "///A/434", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "cHH", "DSSR": "cM-M", "intra_chain": true, "chi1": 171.725, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 36.590, "chi2": -142.611, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 29.004, "C1C1_dist": 11.564, "N1N9_dist": 9.114, "C6C8_dist": 7.584, "CNNC_torsion": -48.402, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.30]", "interBase_angle": 64.332, "planarity": 0.837, "simple_Shear": 0.098, "simple_Stretch": 4.906, "simple_Buckle": 6.488, "simple_Propeller": 64.004, "bp_simpleParams": [ 0.098, 4.906, -0.462, 6.488, 64.004, -178.250 ], "bp_params": [ -1.309, 4.729, -0.462, -12.760, 63.054, -178.495 ], "frame": { "rmsd": null, "origin": [ 182.061, 228.381, 158.736 ], "x_axis": [ 0.399, -0.910, 0.113 ], "y_axis": [ -0.568, -0.149, 0.809 ], "z_axis": [ -0.720, -0.386, -0.577 ], "quaternion": [ 0.410, 0.729, -0.507, -0.208 ] } }, { "index": 231, "nt1": "///A/428", "nt2": "///A/440", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 171.725, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.914, "chi2": -162.760, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.890, "C1C1_dist": 10.353, "N1N9_dist": 8.703, "C6C8_dist": 9.730, "CNNC_torsion": -5.210, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.96],N1-N3(imino)[2.74]", "interBase_angle": 3.809, "planarity": 0.081, "simple_Shear": -0.050, "simple_Stretch": -0.206, "simple_Buckle": -1.985, "simple_Propeller": -3.252, "bp_simpleParams": [ -0.050, -0.206, 0.246, -1.985, -3.252, 3.438 ], "bp_params": [ -0.051, -0.206, 0.246, -1.987, -3.250, 3.438 ], "frame": { "rmsd": null, "origin": [ 180.768, 228.756, 160.770 ], "x_axis": [ 0.501, 0.112, -0.858 ], "y_axis": [ 0.733, -0.583, 0.352 ], "z_axis": [ -0.460, -0.805, -0.374 ], "quaternion": [ 0.369, 0.784, 0.270, -0.420 ] } }, { "index": 232, "nt1": "///A/429", "nt2": "///A/439", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.384, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.993, "chi2": -171.019, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.380, "C1C1_dist": 10.799, "N1N9_dist": 8.990, "C6C8_dist": 9.861, "CNNC_torsion": -18.433, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.97],N1-N3(imino)[2.99]", "interBase_angle": 32.466, "planarity": 0.394, "simple_Shear": 0.022, "simple_Stretch": -0.117, "simple_Buckle": -7.437, "simple_Propeller": -31.603, "bp_simpleParams": [ 0.022, -0.117, -0.947, -7.437, -31.603, 1.855 ], "bp_params": [ 0.020, -0.117, -0.947, -7.796, -31.517, 1.923 ], "frame": { "rmsd": null, "origin": [ 178.380, 227.385, 157.943 ], "x_axis": [ 0.884, -0.243, -0.399 ], "y_axis": [ 0.043, -0.808, 0.588 ], "z_axis": [ -0.465, -0.537, -0.704 ], "quaternion": [ 0.305, 0.921, -0.054, -0.234 ] } }, { "index": 233, "nt1": "///A/430", "nt2": "///A/437", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.210, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 26.117, "chi2": 121.085, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 59.950, "C1C1_dist": 13.363, "N1N9_dist": 11.311, "C6C8_dist": 11.821, "CNNC_torsion": 14.071, "hbonds_num": 1, "hbonds_desc": "N4(amino)-N1[3.96]", "interBase_angle": 15.541, "planarity": 0.246, "simple_Shear": -3.567, "simple_Stretch": 2.665, "simple_Buckle": -7.503, "simple_Propeller": 13.610, "bp_simpleParams": [ -3.567, 2.665, -0.699, -7.503, 13.610, -15.512 ], "bp_params": [ -4.301, 1.149, -0.699, -12.007, 9.867, -15.485 ], "frame": { "rmsd": null, "origin": [ 177.777, 224.614, 152.438 ], "x_axis": [ 0.328, -0.884, -0.331 ], "y_axis": [ -0.426, -0.452, 0.784 ], "z_axis": [ -0.843, -0.116, -0.526 ], "quaternion": [ 0.296, 0.759, -0.432, -0.387 ] } }, { "index": 234, "nt1": "///A/430", "nt2": "///A/438", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -166.210, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.256, "chi2": 178.044, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 5.037, "C1C1_dist": 11.333, "N1N9_dist": 9.030, "C6C8_dist": 8.830, "CNNC_torsion": 132.299, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.14]", "interBase_angle": 64.975, "planarity": 0.795, "simple_Shear": 4.293, "simple_Stretch": 1.386, "simple_Buckle": 4.952, "simple_Propeller": -64.786, "bp_simpleParams": [ 4.293, 1.386, -0.745, 4.952, -64.786, -50.586 ], "bp_params": [ 4.319, -1.302, -0.745, -33.230, -55.835, -54.572 ], "frame": { "rmsd": null, "origin": [ 175.233, 227.531, 153.405 ], "x_axis": [ 0.597, -0.751, 0.283 ], "y_axis": [ -0.649, -0.244, 0.720 ], "z_axis": [ -0.471, -0.614, -0.633 ], "quaternion": [ 0.424, 0.787, -0.445, -0.060 ] } }, { "index": 235, "nt1": "///A/453", "nt2": "///A/468", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 175.088, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.623, "chi2": -140.005, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 55.587, "C1C1_dist": 10.613, "N1N9_dist": 8.890, "C6C8_dist": 9.826, "CNNC_torsion": -4.831, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 3.484, "planarity": 0.165, "simple_Shear": -0.194, "simple_Stretch": -0.223, "simple_Buckle": 2.378, "simple_Propeller": 2.546, "bp_simpleParams": [ -0.194, -0.223, 0.784, 2.378, 2.546, 0.624 ], "bp_params": [ -0.191, -0.225, 0.784, 2.342, 2.579, 0.624 ], "frame": { "rmsd": null, "origin": [ 170.714, 254.031, 151.197 ], "x_axis": [ -0.604, 0.083, -0.793 ], "y_axis": [ 0.635, 0.651, -0.416 ], "z_axis": [ 0.482, -0.754, -0.446 ], "quaternion": [ 0.388, 0.218, 0.822, -0.356 ] } }, { "index": 236, "nt1": "///A/454", "nt2": "///A/467", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.529, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.299, "chi2": -172.361, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.442, "C1C1_dist": 10.484, "N1N9_dist": 8.807, "C6C8_dist": 9.790, "CNNC_torsion": 0.709, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.71]", "interBase_angle": 11.743, "planarity": 0.202, "simple_Shear": -0.213, "simple_Stretch": -0.248, "simple_Buckle": -8.939, "simple_Propeller": -7.616, "bp_simpleParams": [ -0.213, -0.248, -0.964, -8.939, -7.616, 3.265 ], "bp_params": [ -0.209, -0.251, -0.964, -8.833, -7.738, 3.263 ], "frame": { "rmsd": null, "origin": [ 170.048, 250.043, 149.568 ], "x_axis": [ -0.225, 0.615, -0.755 ], "y_axis": [ 0.947, 0.322, -0.020 ], "z_axis": [ 0.231, -0.719, -0.655 ], "quaternion": [ 0.332, 0.526, 0.742, -0.249 ] } }, { "index": 237, "nt1": "///A/455", "nt2": "///A/466", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.703, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.790, "chi2": -146.402, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.636, "C1C1_dist": 10.632, "N1N9_dist": 8.905, "C6C8_dist": 9.812, "CNNC_torsion": 6.704, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 12.190, "planarity": 0.171, "simple_Shear": -0.127, "simple_Stretch": -0.188, "simple_Buckle": -12.175, "simple_Propeller": 0.604, "bp_simpleParams": [ -0.127, -0.188, -0.871, -12.175, 0.604, -0.500 ], "bp_params": [ -0.125, -0.189, -0.871, -12.180, 0.498, -0.497 ], "frame": { "rmsd": null, "origin": [ 169.542, 246.438, 147.425 ], "x_axis": [ 0.238, 0.722, -0.649 ], "y_axis": [ 0.933, 0.015, 0.359 ], "z_axis": [ 0.269, -0.691, -0.671 ], "quaternion": [ 0.382, 0.688, 0.602, -0.138 ] } }, { "index": 238, "nt1": "///A/456", "nt2": "///A/465", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.141, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.401, "chi2": -152.242, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.710, "C1C1_dist": 10.396, "N1N9_dist": 8.707, "C6C8_dist": 9.668, "CNNC_torsion": 8.639, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.94],N1-N3(imino)[2.78]", "interBase_angle": 4.280, "planarity": 0.205, "simple_Shear": 0.111, "simple_Stretch": -0.315, "simple_Buckle": -2.844, "simple_Propeller": 3.199, "bp_simpleParams": [ 0.111, -0.315, -1.003, -2.844, 3.199, 0.511 ], "bp_params": [ 0.106, -0.317, -1.003, -2.794, 3.242, 0.511 ], "frame": { "rmsd": null, "origin": [ 169.725, 244.536, 144.730 ], "x_axis": [ 0.666, 0.678, -0.311 ], "y_axis": [ 0.663, -0.347, 0.664 ], "z_axis": [ 0.342, -0.648, -0.680 ], "quaternion": [ 0.400, 0.820, 0.409, 0.009 ] } }, { "index": 239, "nt1": "///A/457", "nt2": "///A/464", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.209, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.095, "chi2": 179.147, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.704, "C1C1_dist": 10.824, "N1N9_dist": 8.904, "C6C8_dist": 9.755, "CNNC_torsion": 4.576, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.85],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 13.727, "planarity": 0.157, "simple_Shear": -0.234, "simple_Stretch": -0.199, "simple_Buckle": 10.637, "simple_Propeller": 8.676, "bp_simpleParams": [ -0.234, -0.199, 0.076, 10.637, 8.676, -2.227 ], "bp_params": [ -0.231, -0.202, 0.076, 10.512, 8.828, -2.225 ], "frame": { "rmsd": null, "origin": [ 170.369, 242.880, 141.759 ], "x_axis": [ 0.927, 0.350, 0.131 ], "y_axis": [ 0.125, -0.621, 0.774 ], "z_axis": [ 0.353, -0.701, -0.619 ], "quaternion": [ 0.414, 0.890, 0.134, 0.136 ] } }, { "index": 240, "nt1": "///A/460", "nt2": "///A/2439", "bp": "C-G", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -111.640, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.246, "chi2": -171.753, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 67.760, "C1C1_dist": 10.417, "N1N9_dist": 8.935, "C6C8_dist": 9.700, "CNNC_torsion": 5.370, "hbonds_num": 2, "hbonds_desc": "N3-N2(amino)[2.85],N4(amino)*N1(imino)[2.95]", "unusual_base2base_hbonds": 1, "interBase_angle": 56.360, "planarity": 0.553, "simple_Shear": -1.589, "simple_Stretch": 0.651, "simple_Buckle": 46.495, "simple_Propeller": -31.854, "bp_simpleParams": [ -1.589, 0.651, -2.009, 46.495, -31.854, 4.586 ], "bp_params": [ -1.694, 0.277, -2.009, 52.777, -19.776, 4.186 ], "frame": { "rmsd": null, "origin": [ 178.716, 233.532, 136.248 ], "x_axis": [ -0.968, -0.164, 0.191 ], "y_axis": [ 0.134, 0.306, 0.943 ], "z_axis": [ -0.213, 0.938, -0.274 ], "quaternion": [ -0.127, -0.009, 0.798, 0.589 ] } }, { "index": 241, "nt1": "///A/463", "nt2": "///A/2436", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.252, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 46.669, "chi2": -160.261, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 47.560, "C1C1_dist": 10.815, "N1N9_dist": 8.809, "C6C8_dist": 9.528, "CNNC_torsion": 12.945, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.97],O4(carbonyl)-N6(amino)[2.80]", "interBase_angle": 14.017, "planarity": 0.378, "simple_Shear": -0.060, "simple_Stretch": -0.373, "simple_Buckle": -13.871, "simple_Propeller": 2.013, "bp_simpleParams": [ -0.060, -0.373, -1.173, -13.871, 2.013, -9.075 ], "bp_params": [ -0.056, -0.373, -1.173, -13.894, 1.852, -9.010 ], "frame": { "rmsd": null, "origin": [ 170.620, 241.393, 138.269 ], "x_axis": [ 0.712, -0.222, 0.666 ], "y_axis": [ 0.541, 0.778, -0.319 ], "z_axis": [ -0.447, 0.588, 0.674 ], "quaternion": [ 0.889, -0.255, -0.313, -0.215 ] } }, { "index": 242, "nt1": "///A/463", "nt2": "///A/2437", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.252, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 66.520, "chi2": 179.702, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.339, "C1C1_dist": 7.976, "N1N9_dist": 6.470, "C6C8_dist": 7.727, "CNNC_torsion": -12.513, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)*O2(carbonyl)[2.85],N3(imino)-O4(carbonyl)[2.90]", "unusual_base2base_hbonds": 1, "interBase_angle": 22.476, "planarity": 0.347, "simple_Shear": 1.259, "simple_Stretch": -2.152, "simple_Buckle": -22.452, "simple_Propeller": -1.055, "bp_simpleParams": [ 1.259, -2.152, 1.343, -22.452, -1.055, 11.540 ], "bp_params": [ 0.977, -2.295, 1.343, -22.403, 1.809, 11.323 ], "frame": { "rmsd": null, "origin": [ 171.525, 241.595, 136.939 ], "x_axis": [ 0.596, -0.343, 0.726 ], "y_axis": [ 0.623, 0.768, -0.148 ], "z_axis": [ -0.507, 0.541, 0.671 ], "quaternion": [ 0.871, -0.198, -0.354, -0.277 ] } }, { "index": 243, "nt1": "///A/481", "nt2": "///A/482", "bp": "U-C", "name": "Platform", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -146.985, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 129.528, "chi2": -0.861, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 53.135, "C1C1_dist": 6.878, "N1N9_dist": 6.940, "C6C8_dist": 8.977, "CNNC_torsion": 23.192, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)*N3[3.37]", "interBase_angle": 16.617, "planarity": 0.360, "simple_Shear": 3.254, "simple_Stretch": 2.211, "simple_Buckle": -8.891, "simple_Propeller": 14.039, "bp_simpleParams": [ 3.254, 2.211, 0.559, -8.891, 14.039, 84.925 ], "bp_params": [ 3.895, 0.555, 0.559, -1.789, 16.521, 85.513 ], "frame": { "rmsd": null, "origin": [ 148.473, 222.714, 186.396 ], "x_axis": [ -0.534, 0.751, -0.389 ], "y_axis": [ 0.196, -0.337, -0.921 ], "z_axis": [ -0.822, -0.568, 0.033 ], "quaternion": [ 0.201, -0.439, -0.540, 0.690 ] } }, { "index": 244, "nt1": "///A/490", "nt2": "///A/1285", "bp": "A+G", "name": "Linker", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -174.600, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.155, "chi2": -176.193, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 89.285, "C1C1_dist": 8.971, "N1N9_dist": 8.492, "C6C8_dist": 10.564, "CNNC_torsion": -174.556, "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.14],N3-N2(amino)[3.22]", "interBase_angle": 31.720, "planarity": 0.407, "simple_Shear": 6.496, "simple_Stretch": 3.883, "simple_Buckle": -30.861, "simple_Propeller": 7.332, "bp_simpleParams": [ 6.496, 3.883, 1.646, -30.861, 7.332, 146.105 ], "bp_params": [ 1.648, 7.386, 1.646, -26.455, -17.501, 145.600 ], "frame": { "rmsd": null, "origin": [ 131.814, 193.698, 170.502 ], "x_axis": [ -0.208, -0.169, -0.963 ], "y_axis": [ -0.070, 0.985, -0.157 ], "z_axis": [ 0.976, 0.035, -0.217 ], "quaternion": [ 0.624, -0.077, 0.776, -0.039 ] } }, { "index": 245, "nt1": "///A/492", "nt2": "///A/496", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -170.686, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 143.915, "chi2": -179.845, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 93.562, "C1C1_dist": 6.124, "N1N9_dist": 7.443, "C6C8_dist": 9.977, "CNNC_torsion": -12.243, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.19],O2'(hydroxyl)-N3[2.86]", "interBase_angle": 11.796, "planarity": 0.126, "simple_Shear": 1.211, "simple_Stretch": 6.210, "simple_Buckle": -5.578, "simple_Propeller": -10.394, "bp_simpleParams": [ 1.211, 6.210, 0.657, -5.578, -10.394, 132.882 ], "bp_params": [ 2.809, 5.669, 0.657, -8.118, -8.559, 132.893 ], "frame": { "rmsd": null, "origin": [ 140.693, 197.127, 191.879 ], "x_axis": [ -0.414, 0.576, 0.705 ], "y_axis": [ -0.524, 0.483, -0.702 ], "z_axis": [ -0.745, -0.659, 0.102 ], "quaternion": [ 0.541, -0.020, -0.670, 0.508 ] } }, { "index": 246, "nt1": "///A/493", "nt2": "///A/501", "bp": "G+A", "name": "--", "Saenger": "10-X", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -141.063, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 96.984, "chi2": -115.024, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 7.155, "C1C1_dist": 10.324, "N1N9_dist": 9.197, "C6C8_dist": 9.836, "CNNC_torsion": -171.771, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N1[3.28],N3-N6(amino)[3.44]", "interBase_angle": 51.144, "planarity": 0.672, "simple_Shear": 2.192, "simple_Stretch": 4.586, "simple_Buckle": -48.350, "simple_Propeller": 16.675, "bp_simpleParams": [ 2.192, 4.586, -0.296, -48.350, 16.675, -72.088 ], "bp_params": [ 3.548, -3.639, -0.296, 31.656, 40.170, -73.487 ], "frame": { "rmsd": null, "origin": [ 136.853, 197.416, 192.851 ], "x_axis": [ -0.128, -0.296, -0.947 ], "y_axis": [ 0.731, -0.673, 0.112 ], "z_axis": [ -0.670, -0.678, 0.302 ], "quaternion": [ -0.354, -0.557, -0.195, 0.725 ] } }, { "index": 247, "nt1": "///A/495", "nt2": "///A/626", "bp": "U+G", "name": "--", "Saenger": "--", "LW": "tW.", "DSSR": "tW+.", "intra_chain": true, "chi1": -123.493, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 17.207, "chi2": -170.377, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 84.740, "C1C1_dist": 11.594, "N1N9_dist": 10.200, "C6C8_dist": 11.264, "CNNC_torsion": -131.179, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N2(amino)[3.24]", "interBase_angle": 31.483, "planarity": 0.450, "simple_Shear": 1.389, "simple_Stretch": 3.638, "simple_Buckle": 19.714, "simple_Propeller": 24.547, "bp_simpleParams": [ 1.389, 3.638, 0.595, 19.714, 24.547, 103.615 ], "bp_params": [ -3.275, 2.106, 0.595, -20.045, 24.277, 104.008 ], "frame": { "rmsd": null, "origin": [ 151.553, 178.626, 191.556 ], "x_axis": [ -0.051, -0.995, -0.082 ], "y_axis": [ -0.936, 0.019, 0.351 ], "z_axis": [ -0.348, 0.095, -0.933 ], "quaternion": [ -0.094, -0.683, 0.707, 0.158 ] } }, { "index": 248, "nt1": "///A/499", "nt2": "///A/504", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -152.621, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 83.156, "chi2": -161.489, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 68.569, "C1C1_dist": 8.207, "N1N9_dist": 8.006, "C6C8_dist": 10.354, "CNNC_torsion": 169.181, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.28],N2(amino)-N3[3.41]", "interBase_angle": 29.027, "planarity": 0.355, "simple_Shear": 7.448, "simple_Stretch": 4.317, "simple_Buckle": 29.007, "simple_Propeller": -1.077, "bp_simpleParams": [ 7.448, 4.317, 0.292, 29.007, -1.077, -161.024 ], "bp_params": [ -2.966, -8.081, 0.292, -22.979, -17.736, -160.862 ], "frame": { "rmsd": null, "origin": [ 155.123, 199.771, 198.489 ], "x_axis": [ 0.023, -0.569, -0.822 ], "y_axis": [ -0.213, -0.806, 0.552 ], "z_axis": [ -0.977, 0.162, -0.139 ], "quaternion": [ 0.139, 0.701, -0.279, -0.641 ] } }, { "index": 249, "nt1": "///A/504", "nt2": "///A/518", "bp": "A+A", "name": "--", "Saenger": "02-II", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": -161.489, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 11.381, "chi2": -178.677, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 13.684, "C1C1_dist": 11.245, "N1N9_dist": 8.396, "C6C8_dist": 6.591, "CNNC_torsion": -112.141, "hbonds_num": 2, "hbonds_desc": "N7-N6(amino)[2.94],N6(amino)-N7[2.81]", "interBase_angle": 13.755, "planarity": 0.265, "simple_Shear": -7.510, "simple_Stretch": 0.392, "simple_Buckle": -13.021, "simple_Propeller": 4.431, "bp_simpleParams": [ -7.510, 0.392, 0.889, -13.021, 4.431, -173.156 ], "bp_params": [ -5.529, 5.098, 0.889, -7.204, 11.718, -173.179 ], "frame": { "rmsd": null, "origin": [ 153.119, 194.501, 202.880 ], "x_axis": [ -0.346, 0.430, 0.834 ], "y_axis": [ 0.297, 0.893, -0.338 ], "z_axis": [ -0.890, 0.131, -0.437 ], "quaternion": [ 0.527, -0.222, -0.818, 0.063 ] } }, { "index": 250, "nt1": "///A/505", "nt2": "///A/506", "bp": "G+U", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -120.047, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 145.366, "chi2": 179.391, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.576, "C1C1_dist": 6.740, "N1N9_dist": 7.077, "C6C8_dist": 6.948, "CNNC_torsion": 30.947, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-OP2[3.02],N2(amino)-O4(carbonyl)[3.82]", "interBase_angle": 28.961, "planarity": 0.370, "simple_Shear": 0.274, "simple_Stretch": 8.788, "simple_Buckle": -28.898, "simple_Propeller": -1.897, "bp_simpleParams": [ 0.274, 8.788, 0.746, -28.898, -1.897, 22.001 ], "bp_params": [ 8.686, 1.364, 0.746, -7.196, 28.053, 22.619 ], "frame": { "rmsd": null, "origin": [ 158.164, 197.155, 199.665 ], "x_axis": [ 0.143, 0.403, -0.904 ], "y_axis": [ -0.100, 0.914, 0.392 ], "z_axis": [ 0.985, 0.035, 0.171 ], "quaternion": [ 0.746, 0.120, 0.632, 0.169 ] } }, { "index": 251, "nt1": "///A/506", "nt2": "///A/517", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": 179.391, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 25.757, "chi2": 166.308, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 24.236, "C1C1_dist": 9.720, "N1N9_dist": 7.153, "C6C8_dist": 6.102, "CNNC_torsion": -168.299, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.01],N3(imino)-N7[2.80]", "interBase_angle": 6.894, "planarity": 0.107, "simple_Shear": 4.154, "simple_Stretch": 1.472, "simple_Buckle": 6.515, "simple_Propeller": 2.256, "bp_simpleParams": [ 4.154, 1.472, 0.185, 6.515, 2.256, -102.428 ], "bp_params": [ 4.050, -1.739, 0.185, 6.314, -2.769, -102.359 ], "frame": { "rmsd": null, "origin": [ 156.388, 193.370, 204.735 ], "x_axis": [ 0.242, 0.888, -0.390 ], "y_axis": [ -0.324, 0.453, 0.830 ], "z_axis": [ 0.915, -0.075, 0.397 ], "quaternion": [ 0.723, 0.313, 0.451, 0.419 ] } }, { "index": 252, "nt1": "///A/507", "nt2": "///A/516", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -175.648, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 6.588, "chi2": -162.912, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 91.088, "C1C1_dist": 9.974, "N1N9_dist": 8.643, "C6C8_dist": 9.013, "CNNC_torsion": -138.525, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[2.71],N6(amino)-N3[3.00]", "interBase_angle": 3.050, "planarity": 0.045, "simple_Shear": -7.358, "simple_Stretch": 2.553, "simple_Buckle": -2.998, "simple_Propeller": 0.563, "bp_simpleParams": [ -7.358, 2.553, 0.041, -2.998, 0.563, -9.751 ], "bp_params": [ -6.770, -3.850, 0.041, -2.399, -1.883, -9.750 ], "frame": { "rmsd": null, "origin": [ 161.191, 196.786, 202.607 ], "x_axis": [ 0.211, 0.812, -0.545 ], "y_axis": [ -0.291, 0.584, 0.758 ], "z_axis": [ 0.933, -0.002, 0.359 ], "quaternion": [ 0.734, 0.259, 0.503, 0.375 ] } }, { "index": 253, "nt1": "///A/508", "nt2": "///A/515", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.800, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.879, "chi2": -164.524, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.502, "C1C1_dist": 10.649, "N1N9_dist": 8.925, "C6C8_dist": 9.865, "CNNC_torsion": 1.116, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 2.118, "planarity": 0.075, "simple_Shear": 0.187, "simple_Stretch": -0.152, "simple_Buckle": -0.486, "simple_Propeller": -2.062, "bp_simpleParams": [ 0.187, -0.152, -0.282, -0.486, -2.062, 0.482 ], "bp_params": [ 0.185, -0.155, -0.282, -0.515, -2.055, 0.482 ], "frame": { "rmsd": null, "origin": [ 164.949, 197.140, 202.899 ], "x_axis": [ -0.170, 0.919, 0.356 ], "y_axis": [ -0.328, -0.393, 0.859 ], "z_axis": [ 0.929, 0.029, 0.368 ], "quaternion": [ 0.449, 0.462, 0.320, 0.695 ] } }, { "index": 254, "nt1": "///A/509", "nt2": "///A/514", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.540, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.732, "chi2": -172.528, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.316, "C1C1_dist": 10.601, "N1N9_dist": 8.892, "C6C8_dist": 9.853, "CNNC_torsion": -0.957, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 3.634, "planarity": 0.109, "simple_Shear": 0.178, "simple_Stretch": -0.165, "simple_Buckle": 2.664, "simple_Propeller": 2.472, "bp_simpleParams": [ 0.178, -0.165, 0.324, 2.664, 2.472, 0.996 ], "bp_params": [ 0.176, -0.168, 0.324, 2.697, 2.435, 0.996 ], "frame": { "rmsd": null, "origin": [ 168.471, 198.706, 202.709 ], "x_axis": [ -0.367, 0.606, 0.705 ], "y_axis": [ -0.232, -0.794, 0.562 ], "z_axis": [ 0.901, 0.043, 0.432 ], "quaternion": [ 0.260, 0.499, 0.188, 0.805 ] } }, { "index": 255, "nt1": "///A/510", "nt2": "///A/513", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -166.599, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 83.907, "chi2": -135.106, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 19.339, "C1C1_dist": 10.078, "N1N9_dist": 8.742, "C6C8_dist": 8.710, "CNNC_torsion": -156.806, "hbonds_num": 3, "hbonds_desc": "N1(imino)-OP2[2.94],N2(amino)-OP2[2.54],N2(amino)-N7[2.94]", "interBase_angle": 18.593, "planarity": 0.238, "simple_Shear": 8.148, "simple_Stretch": 4.465, "simple_Buckle": 18.531, "simple_Propeller": -1.519, "bp_simpleParams": [ 8.148, 4.465, 0.580, 18.531, -1.519, -41.610 ], "bp_params": [ 7.702, -5.196, 0.580, 7.154, -17.161, -41.966 ], "frame": { "rmsd": null, "origin": [ 173.508, 200.179, 201.094 ], "x_axis": [ -0.599, -0.326, 0.731 ], "y_axis": [ 0.400, -0.913, -0.079 ], "z_axis": [ 0.694, 0.245, 0.677 ], "quaternion": [ -0.203, 0.399, 0.046, 0.893 ] } }, { "index": 256, "nt1": "///A/512", "nt2": "///A/730", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -133.550, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 101.594, "chi2": -152.170, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 154.744, "C1C1_dist": 5.928, "N1N9_dist": 7.643, "C6C8_dist": 10.149, "CNNC_torsion": -32.161, "hbonds_num": 2, "hbonds_desc": "N2(amino)-O2(carbonyl)[3.08],N3-O2'(hydroxyl)[3.26]", "interBase_angle": 20.199, "planarity": 0.259, "simple_Shear": -0.567, "simple_Stretch": 8.252, "simple_Buckle": 10.854, "simple_Propeller": -17.035, "bp_simpleParams": [ -0.567, 8.252, 0.188, 10.854, -17.035, 157.453 ], "bp_params": [ -2.609, 7.849, 0.188, 14.735, -13.816, 157.428 ], "frame": { "rmsd": null, "origin": [ 181.331, 200.589, 197.511 ], "x_axis": [ 0.599, -0.635, -0.487 ], "y_axis": [ -0.362, -0.758, 0.543 ], "z_axis": [ -0.714, -0.149, -0.684 ], "quaternion": [ 0.198, 0.872, -0.286, -0.345 ] } }, { "index": 257, "nt1": "///A/513", "nt2": "///A/842", "bp": "A+C", "name": "--", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -135.106, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.351, "chi2": -165.776, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 96.657, "C1C1_dist": 9.015, "N1N9_dist": 8.855, "C6C8_dist": 11.113, "CNNC_torsion": 160.275, "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.05]", "interBase_angle": 19.769, "planarity": 0.250, "simple_Shear": 6.993, "simple_Stretch": 4.922, "simple_Buckle": 13.216, "simple_Propeller": -14.702, "bp_simpleParams": [ 6.993, 4.922, -0.231, 13.216, -14.702, 140.606 ], "bp_params": [ 1.933, 8.330, -0.231, 19.650, -2.163, 140.072 ], "frame": { "rmsd": null, "origin": [ 178.598, 201.270, 194.823 ], "x_axis": [ 0.384, -0.915, -0.122 ], "y_axis": [ -0.576, -0.341, 0.743 ], "z_axis": [ -0.722, -0.215, -0.658 ], "quaternion": [ 0.310, 0.772, -0.483, -0.273 ] } }, { "index": 258, "nt1": "///A/522", "nt2": "///A/526", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -155.361, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 31.950, "chi2": -114.457, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 12.944, "C1C1_dist": 9.929, "N1N9_dist": 7.337, "C6C8_dist": 6.362, "CNNC_torsion": -176.236, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.74],N3(imino)-N7[2.93]", "interBase_angle": 6.783, "planarity": 0.173, "simple_Shear": 4.003, "simple_Stretch": 1.001, "simple_Buckle": 2.722, "simple_Propeller": 6.212, "bp_simpleParams": [ 4.003, 1.001, -0.641, 2.722, 6.212, -96.246 ], "bp_params": [ 3.775, -1.665, -0.641, 5.959, 3.239, -96.191 ], "frame": { "rmsd": null, "origin": [ 127.865, 187.244, 216.134 ], "x_axis": [ 0.507, 0.630, -0.589 ], "y_axis": [ 0.195, -0.749, -0.633 ], "z_axis": [ -0.840, 0.206, -0.502 ], "quaternion": [ -0.253, 0.830, 0.248, -0.430 ] } }, { "index": 259, "nt1": "///A/523", "nt2": "///A/527", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -165.280, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 90.455, "chi2": 178.959, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 6.769, "C1C1_dist": 10.343, "N1N9_dist": 8.999, "C6C8_dist": 9.373, "CNNC_torsion": 124.781, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.89],N3-N6(amino)[3.05]", "interBase_angle": 17.745, "planarity": 0.265, "simple_Shear": 6.959, "simple_Stretch": 2.514, "simple_Buckle": -2.702, "simple_Propeller": 17.538, "bp_simpleParams": [ 6.959, 2.514, -1.063, -2.702, 17.538, -13.228 ], "bp_params": [ 6.638, -3.270, -1.063, 10.775, 14.098, -13.271 ], "frame": { "rmsd": null, "origin": [ 125.139, 189.545, 214.190 ], "x_axis": [ 0.459, 0.662, -0.592 ], "y_axis": [ 0.151, -0.715, -0.683 ], "z_axis": [ -0.875, 0.225, -0.428 ], "quaternion": [ -0.281, 0.807, 0.252, -0.455 ] } }, { "index": 260, "nt1": "///A/526", "nt2": "///A/549", "bp": "A+A", "name": "--", "Saenger": "01-I", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -114.457, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 36.980, "chi2": -64.928, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 27.385, "C1C1_dist": 13.926, "N1N9_dist": 11.559, "C6C8_dist": 11.889, "CNNC_torsion": -158.443, "hbonds_num": 2, "hbonds_desc": "N6(amino)-N1[3.67],N1-N6(amino)[3.51]", "interBase_angle": 18.019, "planarity": 0.217, "simple_Shear": -0.639, "simple_Stretch": 2.141, "simple_Buckle": -2.514, "simple_Propeller": 17.843, "bp_simpleParams": [ -0.639, 2.141, 0.458, -2.514, 17.843, -172.987 ], "bp_params": [ 2.095, 0.776, 0.458, 17.648, 3.641, -172.906 ], "frame": { "rmsd": null, "origin": [ 126.598, 184.435, 216.196 ], "x_axis": [ 0.256, 0.964, -0.078 ], "y_axis": [ -0.610, 0.223, 0.760 ], "z_axis": [ 0.750, -0.147, 0.645 ], "quaternion": [ 0.729, 0.311, 0.284, 0.540 ] } }, { "index": 261, "nt1": "///A/528", "nt2": "///A/555", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -89.245, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 45.171, "chi2": -78.903, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 42.370, "C1C1_dist": 11.076, "N1N9_dist": 8.970, "C6C8_dist": 9.633, "CNNC_torsion": 27.571, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.79],N1(imino)-N3[2.93],N2(amino)-O2(carbonyl)[2.98]", "interBase_angle": 18.212, "planarity": 0.330, "simple_Shear": -0.081, "simple_Stretch": -0.336, "simple_Buckle": 9.182, "simple_Propeller": 15.728, "bp_simpleParams": [ -0.081, -0.336, -0.856, 9.182, 15.728, -11.155 ], "bp_params": [ -0.082, -0.336, -0.856, 9.191, 15.723, -11.225 ], "frame": { "rmsd": null, "origin": [ 132.734, 187.045, 215.205 ], "x_axis": [ 0.660, 0.751, 0.007 ], "y_axis": [ -0.368, 0.315, 0.875 ], "z_axis": [ 0.655, -0.580, 0.485 ], "quaternion": [ 0.784, 0.464, 0.207, 0.357 ] } }, { "index": 262, "nt1": "///A/529", "nt2": "///A/543", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -167.673, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 119.787, "chi2": -176.053, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 33.167, "C1C1_dist": 9.677, "N1N9_dist": 9.198, "C6C8_dist": 10.490, "CNNC_torsion": -21.847, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[2.85],O2(carbonyl)-N6(amino)[2.97]", "interBase_angle": 12.190, "planarity": 0.188, "simple_Shear": 5.897, "simple_Stretch": 3.484, "simple_Buckle": 4.642, "simple_Propeller": -11.272, "bp_simpleParams": [ 5.897, 3.484, 0.920, 4.642, -11.272, 46.021 ], "bp_params": [ 6.765, -1.066, 0.920, -3.607, -11.645, 46.215 ], "frame": { "rmsd": null, "origin": [ 127.514, 177.353, 222.395 ], "x_axis": [ 0.786, -0.004, -0.618 ], "y_axis": [ 0.092, 0.990, 0.111 ], "z_axis": [ 0.611, -0.144, 0.778 ], "quaternion": [ 0.943, 0.068, 0.326, -0.025 ] } }, { "index": 263, "nt1": "///A/530", "nt2": "///A/543", "bp": "A-A", "name": "~Sheared", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": 179.278, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 1.429, "chi2": -176.053, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 83.923, "C1C1_dist": 9.576, "N1N9_dist": 8.090, "C6C8_dist": 8.159, "CNNC_torsion": -179.871, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.33],N6(amino)-N3[3.39]", "interBase_angle": 17.933, "planarity": 0.277, "simple_Shear": -7.571, "simple_Stretch": 2.401, "simple_Buckle": 17.859, "simple_Propeller": 1.619, "bp_simpleParams": [ -7.571, 2.401, 1.118, 17.859, 1.619, -25.900 ], "bp_params": [ -6.503, -4.560, 1.118, 9.563, 15.170, -26.034 ], "frame": { "rmsd": null, "origin": [ 122.329, 177.749, 227.471 ], "x_axis": [ 0.424, -0.538, -0.729 ], "y_axis": [ 0.573, 0.782, -0.244 ], "z_axis": [ 0.701, -0.315, 0.640 ], "quaternion": [ 0.843, 0.021, 0.424, -0.329 ] } }, { "index": 264, "nt1": "///A/531", "nt2": "///A/542", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.462, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.239, "chi2": 174.112, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.924, "C1C1_dist": 10.639, "N1N9_dist": 8.868, "C6C8_dist": 9.799, "CNNC_torsion": -2.406, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 7.503, "planarity": 0.178, "simple_Shear": 0.172, "simple_Stretch": -0.196, "simple_Buckle": 7.475, "simple_Propeller": 0.654, "bp_simpleParams": [ 0.172, -0.196, 0.416, 7.475, 0.654, 0.337 ], "bp_params": [ 0.169, -0.198, 0.416, 7.483, 0.556, 0.336 ], "frame": { "rmsd": null, "origin": [ 125.176, 175.112, 227.998 ], "x_axis": [ 0.659, 0.538, -0.526 ], "y_axis": [ -0.148, 0.778, 0.611 ], "z_axis": [ 0.738, -0.325, 0.592 ], "quaternion": [ 0.870, 0.269, 0.363, 0.197 ] } }, { "index": 265, "nt1": "///A/532", "nt2": "///A/541", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.254, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.955, "chi2": -165.855, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.848, "C1C1_dist": 10.550, "N1N9_dist": 8.836, "C6C8_dist": 9.803, "CNNC_torsion": 1.499, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 8.965, "planarity": 0.191, "simple_Shear": 0.194, "simple_Stretch": -0.226, "simple_Buckle": 0.571, "simple_Propeller": 8.946, "bp_simpleParams": [ 0.194, -0.226, 0.589, 0.571, 8.946, 2.426 ], "bp_params": [ 0.191, -0.229, 0.589, 0.704, 8.937, 2.433 ], "frame": { "rmsd": null, "origin": [ 127.978, 172.144, 228.659 ], "x_axis": [ 0.427, 0.882, -0.200 ], "y_axis": [ -0.499, 0.414, 0.761 ], "z_axis": [ 0.754, -0.225, 0.617 ], "quaternion": [ 0.784, 0.314, 0.304, 0.441 ] } }, { "index": 266, "nt1": "///A/533", "nt2": "///A/540", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.009, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.479, "chi2": 173.710, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.033, "C1C1_dist": 10.648, "N1N9_dist": 8.886, "C6C8_dist": 9.838, "CNNC_torsion": 3.462, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 10.403, "planarity": 0.172, "simple_Shear": 0.258, "simple_Stretch": -0.182, "simple_Buckle": -0.366, "simple_Propeller": 10.397, "bp_simpleParams": [ 0.258, -0.182, 0.427, -0.366, 10.397, 2.105 ], "bp_params": [ 0.254, -0.187, 0.427, -0.151, 10.402, 2.114 ], "frame": { "rmsd": null, "origin": [ 131.749, 171.154, 228.857 ], "x_axis": [ -0.017, 0.983, 0.185 ], "y_axis": [ -0.619, -0.155, 0.770 ], "z_axis": [ 0.786, -0.101, 0.610 ], "quaternion": [ 0.600, 0.363, 0.250, 0.668 ] } }, { "index": 267, "nt1": "///A/534", "nt2": "///A/539", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.652, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.406, "chi2": -159.482, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.894, "C1C1_dist": 10.590, "N1N9_dist": 8.885, "C6C8_dist": 9.863, "CNNC_torsion": 8.656, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.99]", "interBase_angle": 17.031, "planarity": 0.273, "simple_Shear": 0.264, "simple_Stretch": -0.150, "simple_Buckle": 4.088, "simple_Propeller": 16.533, "bp_simpleParams": [ 0.264, -0.150, 0.438, 4.088, 16.533, 3.964 ], "bp_params": [ 0.260, -0.156, 0.438, 4.453, 16.439, 4.002 ], "frame": { "rmsd": null, "origin": [ 135.653, 171.233, 228.874 ], "x_axis": [ -0.362, 0.832, 0.419 ], "y_axis": [ -0.529, -0.554, 0.642 ], "z_axis": [ 0.767, 0.011, 0.641 ], "quaternion": [ 0.426, 0.371, 0.204, 0.800 ] } }, { "index": 268, "nt1": "///A/544", "nt2": "///A/552", "bp": "G-G", "name": "--", "Saenger": "--", "LW": ".WH", "DSSR": ".W-M", "intra_chain": true, "chi1": 172.282, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 40.166, "chi2": -77.507, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 14.600, "C1C1_dist": 13.713, "N1N9_dist": 11.200, "C6C8_dist": 10.652, "CNNC_torsion": 62.074, "hbonds_num": 2, "hbonds_desc": "N1(imino)-O6(carbonyl)[3.11],N2(amino)-O6(carbonyl)[3.21]", "interBase_angle": 22.444, "planarity": 0.313, "simple_Shear": 3.103, "simple_Stretch": 2.821, "simple_Buckle": -22.384, "simple_Propeller": 1.630, "bp_simpleParams": [ 3.103, 2.821, -0.165, -22.384, 1.630, -60.791 ], "bp_params": [ 3.914, 1.505, -0.165, -20.281, 9.611, -60.184 ], "frame": { "rmsd": null, "origin": [ 125.092, 180.563, 220.025 ], "x_axis": [ -0.239, -0.967, -0.088 ], "y_axis": [ -0.800, 0.145, 0.582 ], "z_axis": [ -0.550, 0.209, -0.808 ], "quaternion": [ -0.156, -0.597, 0.740, 0.267 ] } }, { "index": 269, "nt1": "///A/545", "nt2": "///A/549", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -158.383, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 32.300, "chi2": -64.928, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 18.782, "C1C1_dist": 9.938, "N1N9_dist": 7.412, "C6C8_dist": 6.466, "CNNC_torsion": -179.232, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.99],N3(imino)-N7[3.05]", "interBase_angle": 1.211, "planarity": 0.082, "simple_Shear": 4.390, "simple_Stretch": 1.430, "simple_Buckle": -0.582, "simple_Propeller": 1.062, "bp_simpleParams": [ 4.390, 1.430, 0.490, -0.582, 1.062, -95.716 ], "bp_params": [ 4.221, -1.871, 0.490, 0.277, 1.179, -95.719 ], "frame": { "rmsd": null, "origin": [ 125.042, 181.556, 216.347 ], "x_axis": [ -0.701, -0.496, 0.513 ], "y_axis": [ -0.304, 0.858, 0.414 ], "z_axis": [ -0.646, 0.134, -0.752 ], "quaternion": [ -0.319, -0.220, 0.910, 0.151 ] } }, { "index": 270, "nt1": "///A/546", "nt2": "///A/551", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -164.432, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 98.758, "chi2": -163.474, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 10.863, "C1C1_dist": 9.990, "N1N9_dist": 8.848, "C6C8_dist": 9.334, "CNNC_torsion": -47.160, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.99],N3-N6(amino)[2.97]", "interBase_angle": 14.395, "planarity": 0.228, "simple_Shear": 7.135, "simple_Stretch": 2.605, "simple_Buckle": 0.195, "simple_Propeller": 14.393, "bp_simpleParams": [ 7.135, 2.605, 0.484, 0.195, 14.393, -2.194 ], "bp_params": [ 6.777, -3.430, 0.484, 10.644, 9.691, -2.193 ], "frame": { "rmsd": null, "origin": [ 122.439, 180.457, 214.234 ], "x_axis": [ -0.678, -0.584, 0.446 ], "y_axis": [ -0.410, 0.804, 0.430 ], "z_axis": [ -0.610, 0.109, -0.785 ], "quaternion": [ -0.292, -0.275, 0.904, 0.149 ] } }, { "index": 271, "nt1": "///A/572", "nt2": "///A/2654", "bp": "A+G", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -114.056, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 62.616, "chi2": -174.389, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 81.580, "C1C1_dist": 8.778, "N1N9_dist": 8.300, "C6C8_dist": 10.362, "CNNC_torsion": 141.325, "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.46],N3-N2(amino)[3.73]", "interBase_angle": 56.917, "planarity": 0.630, "simple_Shear": 7.205, "simple_Stretch": 3.706, "simple_Buckle": 46.072, "simple_Propeller": -33.421, "bp_simpleParams": [ 7.205, 3.706, -2.349, 46.072, -33.421, 165.097 ], "bp_params": [ 2.763, 7.616, -2.349, 56.407, 7.603, 163.145 ], "frame": { "rmsd": null, "origin": [ 153.328, 133.907, 205.314 ], "x_axis": [ -0.099, 0.349, 0.932 ], "y_axis": [ -0.992, 0.042, -0.121 ], "z_axis": [ -0.081, -0.936, 0.342 ], "quaternion": [ 0.567, 0.360, -0.447, 0.591 ] } }, { "index": 272, "nt1": "///A/575", "nt2": "///A/2070", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -62.380, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 17.149, "chi2": -159.057, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 35.927, "C1C1_dist": 9.671, "N1N9_dist": 7.197, "C6C8_dist": 6.343, "CNNC_torsion": 176.442, "hbonds_num": 2, "hbonds_desc": "N7-N3(imino)[2.91],N6(amino)-O2(carbonyl)[2.78]", "interBase_angle": 1.032, "planarity": 0.013, "simple_Shear": -4.737, "simple_Stretch": 1.314, "simple_Buckle": 1.005, "simple_Propeller": 0.234, "bp_simpleParams": [ -4.737, 1.314, 0.039, 1.005, 0.234, -91.975 ], "bp_params": [ -4.320, -2.345, 0.039, 0.560, 0.867, -91.976 ], "frame": { "rmsd": null, "origin": [ 162.612, 135.649, 188.683 ], "x_axis": [ -0.001, -0.840, -0.543 ], "y_axis": [ -0.728, 0.373, -0.576 ], "z_axis": [ 0.686, 0.394, -0.611 ], "quaternion": [ 0.436, -0.556, 0.704, -0.064 ] } }, { "index": 273, "nt1": "///A/577", "nt2": "///A/2047", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -99.150, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 59.194, "chi2": -166.285, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.924, "C1C1_dist": 11.250, "N1N9_dist": 9.538, "C6C8_dist": 10.426, "CNNC_torsion": -11.571, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[3.65],O4(carbonyl)-N6(amino)[3.63]", "interBase_angle": 16.279, "planarity": 0.197, "simple_Shear": 0.802, "simple_Stretch": 0.523, "simple_Buckle": -0.987, "simple_Propeller": -16.249, "bp_simpleParams": [ 0.802, 0.523, -0.177, -0.987, -16.249, -2.049 ], "bp_params": [ 0.840, 0.459, -0.177, -2.240, -16.124, -2.069 ], "frame": { "rmsd": null, "origin": [ 159.577, 155.120, 182.170 ], "x_axis": [ 0.947, -0.225, -0.228 ], "y_axis": [ -0.303, -0.862, -0.406 ], "z_axis": [ -0.105, 0.453, -0.885 ], "quaternion": [ -0.224, 0.961, -0.137, -0.087 ] } }, { "index": 274, "nt1": "///A/578", "nt2": "///A/2049", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": 72.084, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 37.260, "chi2": -175.977, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 144.353, "C1C1_dist": 8.142, "N1N9_dist": 8.207, "C6C8_dist": 9.614, "CNNC_torsion": 47.974, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[3.43]", "interBase_angle": 54.134, "planarity": 0.710, "simple_Shear": -4.070, "simple_Stretch": 4.813, "simple_Buckle": -19.303, "simple_Propeller": 50.576, "bp_simpleParams": [ -4.070, 4.813, 0.812, -19.303, 50.576, 98.495 ], "bp_params": [ -6.277, 0.575, 0.812, -48.784, 23.465, 94.350 ], "frame": { "rmsd": null, "origin": [ 159.675, 150.083, 186.194 ], "x_axis": [ 0.996, 0.025, 0.086 ], "y_axis": [ 0.031, -0.997, -0.065 ], "z_axis": [ 0.084, 0.067, -0.994 ], "quaternion": [ -0.033, 0.998, 0.014, 0.043 ] } }, { "index": 275, "nt1": "///A/579", "nt2": "///A/604", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.981, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.651, "chi2": -152.455, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.481, "C1C1_dist": 10.820, "N1N9_dist": 8.969, "C6C8_dist": 9.848, "CNNC_torsion": -1.909, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.82]", "interBase_angle": 8.937, "planarity": 0.109, "simple_Shear": -0.193, "simple_Stretch": -0.131, "simple_Buckle": -8.936, "simple_Propeller": 0.037, "bp_simpleParams": [ -0.193, -0.131, -0.195, -8.936, 0.037, -1.212 ], "bp_params": [ -0.191, -0.134, -0.195, -8.936, -0.090, -1.208 ], "frame": { "rmsd": null, "origin": [ 148.830, 142.899, 177.624 ], "x_axis": [ 0.217, -0.693, 0.688 ], "y_axis": [ -0.242, 0.644, 0.726 ], "z_axis": [ -0.946, -0.323, -0.028 ], "quaternion": [ 0.677, 0.387, -0.603, -0.167 ] } }, { "index": 276, "nt1": "///A/580", "nt2": "///A/603", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.720, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.841, "chi2": -164.982, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 45.335, "C1C1_dist": 10.530, "N1N9_dist": 8.800, "C6C8_dist": 9.707, "CNNC_torsion": 0.966, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.91],O2(carbonyl)-N2(amino)[3.08],N3(imino)-O6(carbonyl)[2.98]", "interBase_angle": 5.797, "planarity": 0.074, "simple_Shear": 1.541, "simple_Stretch": -0.165, "simple_Buckle": -0.494, "simple_Propeller": 5.775, "bp_simpleParams": [ 1.541, -0.165, 0.046, -0.494, 5.775, -0.890 ], "bp_params": [ 1.499, -0.394, 0.046, 0.378, 5.784, -0.891 ], "frame": { "rmsd": null, "origin": [ 146.113, 141.067, 177.181 ], "x_axis": [ 0.103, -0.070, 0.992 ], "y_axis": [ -0.303, 0.948, 0.099 ], "z_axis": [ -0.947, -0.311, 0.076 ], "quaternion": [ 0.729, 0.140, -0.665, 0.080 ] } }, { "index": 277, "nt1": "///A/581", "nt2": "///A/602", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.284, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.918, "chi2": -173.070, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.445, "C1C1_dist": 10.542, "N1N9_dist": 8.841, "C6C8_dist": 9.799, "CNNC_torsion": 2.113, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 8.254, "planarity": 0.162, "simple_Shear": 0.225, "simple_Stretch": -0.196, "simple_Buckle": 6.295, "simple_Propeller": 5.338, "bp_simpleParams": [ 0.225, -0.196, 0.255, 6.295, 5.338, 1.152 ], "bp_params": [ 0.221, -0.201, 0.255, 6.397, 5.215, 1.151 ], "frame": { "rmsd": null, "origin": [ 143.806, 138.577, 178.037 ], "x_axis": [ 0.015, 0.443, 0.896 ], "y_axis": [ -0.358, 0.840, -0.409 ], "z_axis": [ -0.934, -0.315, 0.172 ], "quaternion": [ 0.712, -0.033, -0.643, 0.281 ] } }, { "index": 278, "nt1": "///A/582", "nt2": "///A/601", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.650, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.219, "chi2": -162.808, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.529, "C1C1_dist": 10.463, "N1N9_dist": 8.832, "C6C8_dist": 9.816, "CNNC_torsion": 5.307, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.01],N1-N3(imino)[2.85]", "interBase_angle": 7.699, "planarity": 0.123, "simple_Shear": 0.043, "simple_Stretch": -0.124, "simple_Buckle": -7.699, "simple_Propeller": 0.036, "bp_simpleParams": [ 0.043, -0.124, -0.651, -7.699, 0.036, 1.460 ], "bp_params": [ 0.042, -0.124, -0.651, -7.698, 0.106, 1.457 ], "frame": { "rmsd": null, "origin": [ 141.420, 137.021, 180.769 ], "x_axis": [ 0.113, 0.910, 0.398 ], "y_axis": [ -0.503, 0.398, -0.767 ], "z_axis": [ -0.857, -0.113, 0.503 ], "quaternion": [ 0.710, -0.230, -0.442, 0.498 ] } }, { "index": 279, "nt1": "///A/583", "nt2": "///A/600", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -158.707, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 94.793, "chi2": -175.146, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 9.386, "C1C1_dist": 9.954, "N1N9_dist": 8.731, "C6C8_dist": 9.124, "CNNC_torsion": 113.525, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[3.30],N2(amino)-N7[3.07]", "interBase_angle": 9.115, "planarity": 0.201, "simple_Shear": 7.576, "simple_Stretch": 2.835, "simple_Buckle": -8.466, "simple_Propeller": 3.378, "bp_simpleParams": [ 7.576, 2.835, -1.057, -8.466, 3.378, -8.338 ], "bp_params": [ 7.001, -4.053, -1.057, -2.771, 8.684, -8.360 ], "frame": { "rmsd": null, "origin": [ 138.523, 135.946, 183.519 ], "x_axis": [ -0.344, 0.813, -0.470 ], "y_axis": [ -0.398, -0.580, -0.711 ], "z_axis": [ -0.851, -0.057, 0.523 ], "quaternion": [ 0.387, -0.422, -0.246, 0.782 ] } }, { "index": 280, "nt1": "///A/584", "nt2": "///A/599", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -172.626, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 6.314, "chi2": 177.950, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 90.262, "C1C1_dist": 10.004, "N1N9_dist": 8.655, "C6C8_dist": 8.995, "CNNC_torsion": 162.730, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.78],N6(amino)-O2'(hydroxyl)[2.75],N6(amino)-N3[3.15]", "interBase_angle": 6.016, "planarity": 0.115, "simple_Shear": -7.458, "simple_Stretch": 2.679, "simple_Buckle": -4.686, "simple_Propeller": 3.772, "bp_simpleParams": [ -7.458, 2.679, -0.375, -4.686, 3.772, -12.022 ], "bp_params": [ -6.858, -3.971, -0.375, -5.905, -1.149, -12.007 ], "frame": { "rmsd": null, "origin": [ 136.345, 137.696, 185.879 ], "x_axis": [ 0.040, 0.940, -0.339 ], "y_axis": [ -0.521, -0.270, -0.810 ], "z_axis": [ -0.852, 0.209, 0.479 ], "quaternion": [ 0.559, -0.456, -0.230, 0.654 ] } }, { "index": 281, "nt1": "///A/585", "nt2": "///A/598", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.848, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 39.788, "chi2": -171.054, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 64.372, "C1C1_dist": 10.729, "N1N9_dist": 8.969, "C6C8_dist": 9.782, "CNNC_torsion": 9.517, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.94],N1(imino)-O2(carbonyl)[2.97]", "interBase_angle": 9.168, "planarity": 0.145, "simple_Shear": -2.401, "simple_Stretch": 0.083, "simple_Buckle": -5.854, "simple_Propeller": 7.056, "bp_simpleParams": [ -2.401, 0.083, -0.706, -5.854, 7.056, -4.900 ], "bp_params": [ -2.351, -0.492, -0.706, -7.367, 5.458, -4.895 ], "frame": { "rmsd": null, "origin": [ 133.442, 138.864, 188.409 ], "x_axis": [ -0.308, 0.418, -0.855 ], "y_axis": [ -0.337, -0.888, -0.313 ], "z_axis": [ -0.890, 0.192, 0.415 ], "quaternion": [ 0.234, -0.540, -0.037, 0.808 ] } }, { "index": 282, "nt1": "///A/586", "nt2": "///A/597", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.214, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.543, "chi2": -162.396, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.127, "C1C1_dist": 10.612, "N1N9_dist": 8.894, "C6C8_dist": 9.856, "CNNC_torsion": 6.911, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 9.183, "planarity": 0.119, "simple_Shear": 0.203, "simple_Stretch": -0.152, "simple_Buckle": 1.734, "simple_Propeller": 9.018, "bp_simpleParams": [ 0.203, -0.152, -0.136, 1.734, 9.018, 1.391 ], "bp_params": [ 0.201, -0.156, -0.136, 1.879, 8.989, 1.395 ], "frame": { "rmsd": null, "origin": [ 130.554, 140.762, 189.265 ], "x_axis": [ -0.395, -0.251, -0.884 ], "y_axis": [ -0.031, -0.958, 0.285 ], "z_axis": [ -0.918, 0.140, 0.370 ], "quaternion": [ -0.067, -0.546, 0.129, 0.825 ] } }, { "index": 283, "nt1": "///A/587", "nt2": "///A/596", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.154, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.637, "chi2": -167.090, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.005, "C1C1_dist": 10.620, "N1N9_dist": 8.920, "C6C8_dist": 9.883, "CNNC_torsion": 1.703, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 1.468, "planarity": 0.070, "simple_Shear": 0.208, "simple_Stretch": -0.140, "simple_Buckle": 1.438, "simple_Propeller": -0.298, "bp_simpleParams": [ 0.208, -0.140, -0.357, 1.438, -0.298, 1.220 ], "bp_params": [ 0.206, -0.143, -0.357, 1.433, -0.321, 1.220 ], "frame": { "rmsd": null, "origin": [ 127.382, 142.494, 188.941 ], "x_axis": [ -0.224, -0.745, -0.628 ], "y_axis": [ 0.085, -0.657, 0.749 ], "z_axis": [ -0.971, 0.114, 0.211 ], "quaternion": [ -0.287, -0.553, 0.298, 0.723 ] } }, { "index": 284, "nt1": "///A/588", "nt2": "///A/595", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.390, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.208, "chi2": -171.963, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.100, "C1C1_dist": 10.772, "N1N9_dist": 8.959, "C6C8_dist": 9.876, "CNNC_torsion": -0.098, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 4.677, "planarity": 0.102, "simple_Shear": 0.166, "simple_Stretch": -0.147, "simple_Buckle": 3.297, "simple_Propeller": -3.317, "bp_simpleParams": [ 0.166, -0.147, -0.492, 3.297, -3.317, 0.330 ], "bp_params": [ 0.165, -0.149, -0.492, 3.259, -3.355, 0.330 ], "frame": { "rmsd": null, "origin": [ 124.271, 143.384, 187.432 ], "x_axis": [ 0.028, -0.987, -0.159 ], "y_axis": [ 0.071, -0.157, 0.985 ], "z_axis": [ -0.997, -0.039, 0.065 ], "quaternion": [ -0.484, -0.529, 0.433, 0.546 ] } }, { "index": 285, "nt1": "///A/590", "nt2": "///A/593", "bp": "U+A", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -159.677, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 62.538, "chi2": 66.845, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 54.679, "C1C1_dist": 8.096, "N1N9_dist": 6.576, "C6C8_dist": 6.136, "CNNC_torsion": -18.545, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N7[3.11],O4(carbonyl)-N6(amino)[3.02]", "interBase_angle": 8.261, "planarity": 0.413, "simple_Shear": -3.013, "simple_Stretch": 1.109, "simple_Buckle": 4.358, "simple_Propeller": 7.018, "bp_simpleParams": [ -3.013, 1.109, 1.657, 4.358, 7.018, -67.941 ], "bp_params": [ -0.806, 3.108, 1.657, 8.251, 0.423, -67.804 ], "frame": { "rmsd": null, "origin": [ 118.856, 146.719, 181.301 ], "x_axis": [ -0.010, -0.589, 0.808 ], "y_axis": [ 0.434, 0.726, 0.534 ], "z_axis": [ -0.901, 0.356, 0.248 ], "quaternion": [ 0.701, 0.063, -0.610, -0.365 ] } }, { "index": 286, "nt1": "///A/591", "nt2": "///A/1269", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -99.119, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 46.765, "chi2": 164.840, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.737, "C1C1_dist": 10.688, "N1N9_dist": 8.814, "C6C8_dist": 9.572, "CNNC_torsion": -0.529, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.67],O4(carbonyl)-N6(amino)[2.47]", "interBase_angle": 13.090, "planarity": 0.146, "simple_Shear": -0.888, "simple_Stretch": -0.274, "simple_Buckle": 9.654, "simple_Propeller": -8.841, "bp_simpleParams": [ -0.888, -0.274, -0.502, 9.654, -8.841, -7.435 ], "bp_params": [ -0.857, -0.358, -0.502, 10.468, -7.860, -7.422 ], "frame": { "rmsd": null, "origin": [ 122.863, 163.791, 181.470 ], "x_axis": [ 0.942, -0.022, 0.335 ], "y_axis": [ -0.163, -0.903, 0.398 ], "z_axis": [ 0.294, -0.429, -0.854 ], "quaternion": [ 0.215, 0.962, -0.048, 0.163 ] } }, { "index": 287, "nt1": "///A/595", "nt2": "///A/1260", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -171.963, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 141.434, "chi2": -112.833, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 79.982, "C1C1_dist": 7.067, "N1N9_dist": 8.001, "C6C8_dist": 10.335, "CNNC_torsion": -22.836, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N3[2.83],N2(amino)-N1[3.79]", "interBase_angle": 30.202, "planarity": 0.390, "simple_Shear": 1.958, "simple_Stretch": 5.760, "simple_Buckle": 29.183, "simple_Propeller": -7.780, "bp_simpleParams": [ 1.958, 5.760, 1.545, 29.183, -7.780, 118.854 ], "bp_params": [ 3.942, 4.634, 1.545, 24.356, -17.859, 118.309 ], "frame": { "rmsd": null, "origin": [ 123.846, 146.577, 187.535 ], "x_axis": [ -0.040, -0.631, 0.774 ], "y_axis": [ -0.213, -0.752, -0.624 ], "z_axis": [ 0.976, -0.190, -0.104 ], "quaternion": [ -0.161, 0.674, -0.313, 0.650 ] } }, { "index": 288, "nt1": "///A/606", "nt2": "///A/2062", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -111.310, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 50.530, "chi2": -104.280, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 61.703, "C1C1_dist": 10.788, "N1N9_dist": 9.166, "C6C8_dist": 10.074, "CNNC_torsion": 0.207, "hbonds_num": 3, "hbonds_desc": "N3(imino)-N1[3.31],O4(carbonyl)-N6(amino)[3.38],O4(carbonyl)*N1[3.17]", "unusual_base2base_hbonds": 1, "interBase_angle": 29.825, "planarity": 0.319, "simple_Shear": -1.114, "simple_Stretch": 0.420, "simple_Buckle": -25.197, "simple_Propeller": 15.959, "bp_simpleParams": [ -1.114, 0.420, 1.084, -25.197, 15.959, 1.236 ], "bp_params": [ -1.160, 0.268, 1.084, -27.151, 12.345, 1.208 ], "frame": { "rmsd": null, "origin": [ 166.298, 147.511, 173.894 ], "x_axis": [ 0.338, -0.548, -0.766 ], "y_axis": [ -0.892, 0.074, -0.446 ], "z_axis": [ 0.301, 0.833, -0.463 ], "quaternion": [ -0.487, 0.657, -0.548, -0.177 ] } }, { "index": 289, "nt1": "///A/607", "nt2": "///A/622", "bp": "G-A", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.549, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 45.914, "chi2": -139.267, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 43.048, "C1C1_dist": 12.928, "N1N9_dist": 10.831, "C6C8_dist": 11.171, "CNNC_torsion": 2.451, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N6(amino)[2.94],N1(imino)-N1[3.04]", "interBase_angle": 13.153, "planarity": 0.239, "simple_Shear": 0.322, "simple_Stretch": 1.528, "simple_Buckle": -12.277, "simple_Propeller": -4.720, "bp_simpleParams": [ 0.322, 1.528, -0.745, -12.277, -4.720, -19.348 ], "bp_params": [ 0.378, 1.515, -0.745, -12.446, -4.254, -19.249 ], "frame": { "rmsd": null, "origin": [ 159.965, 161.593, 181.186 ], "x_axis": [ 0.918, -0.380, 0.112 ], "y_axis": [ -0.283, -0.826, -0.488 ], "z_axis": [ 0.278, 0.416, -0.866 ], "quaternion": [ -0.238, 0.950, -0.174, 0.103 ] } }, { "index": 290, "nt1": "///A/608", "nt2": "///A/621", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.100, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.268, "chi2": -136.713, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.569, "C1C1_dist": 10.744, "N1N9_dist": 8.963, "C6C8_dist": 9.880, "CNNC_torsion": 3.738, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.80],N3-N1(imino)[2.93],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 3.566, "planarity": 0.132, "simple_Shear": 0.166, "simple_Stretch": -0.147, "simple_Buckle": -2.335, "simple_Propeller": 2.695, "bp_simpleParams": [ 0.166, -0.147, -0.512, -2.335, 2.695, -0.173 ], "bp_params": [ 0.164, -0.149, -0.512, -2.304, 2.722, -0.173 ], "frame": { "rmsd": null, "origin": [ 161.344, 163.162, 178.497 ], "x_axis": [ 0.636, -0.766, -0.095 ], "y_axis": [ -0.732, -0.559, -0.389 ], "z_axis": [ 0.245, 0.317, -0.916 ], "quaternion": [ -0.200, 0.882, -0.425, 0.042 ] } }, { "index": 291, "nt1": "///A/609", "nt2": "///A/620", "bp": "C-U", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.086, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.080, "chi2": -155.757, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 41.246, "C1C1_dist": 10.310, "N1N9_dist": 8.380, "C6C8_dist": 9.157, "CNNC_torsion": -14.992, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O4(carbonyl)[3.03]", "interBase_angle": 24.799, "planarity": 0.299, "simple_Shear": 1.551, "simple_Stretch": -0.802, "simple_Buckle": 0.982, "simple_Propeller": -24.779, "bp_simpleParams": [ 1.551, -0.802, -0.497, 0.982, -24.779, -11.115 ], "bp_params": [ 1.406, -1.035, -0.497, -2.936, -24.625, -11.371 ], "frame": { "rmsd": null, "origin": [ 163.275, 164.625, 175.513 ], "x_axis": [ -0.042, -0.998, -0.043 ], "y_axis": [ -0.946, 0.053, -0.321 ], "z_axis": [ 0.322, 0.028, -0.946 ], "quaternion": [ 0.128, -0.680, 0.714, -0.103 ] } }, { "index": 292, "nt1": "///A/610", "nt2": "///A/619", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.831, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.687, "chi2": -167.485, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.233, "C1C1_dist": 10.663, "N1N9_dist": 8.928, "C6C8_dist": 9.844, "CNNC_torsion": -10.466, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.91],O4(carbonyl)-N6(amino)[3.00]", "interBase_angle": 16.381, "planarity": 0.195, "simple_Shear": -0.099, "simple_Stretch": -0.007, "simple_Buckle": -15.818, "simple_Propeller": -4.256, "bp_simpleParams": [ -0.099, -0.007, 0.312, -15.818, -4.256, -0.846 ], "bp_params": [ -0.099, -0.008, 0.312, -15.771, -4.427, -0.838 ], "frame": { "rmsd": null, "origin": [ 165.884, 163.197, 172.444 ], "x_axis": [ -0.531, -0.847, -0.016 ], "y_axis": [ -0.826, 0.521, -0.215 ], "z_axis": [ 0.191, -0.101, -0.976 ], "quaternion": [ 0.059, -0.481, 0.870, -0.091 ] } }, { "index": 293, "nt1": "///A/612", "nt2": "///A/614", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -174.987, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 74.575, "chi2": -146.542, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 37.767, "C1C1_dist": 7.514, "N1N9_dist": 6.386, "C6C8_dist": 6.370, "CNNC_torsion": -165.065, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)*N7[3.15]", "interBase_angle": 29.238, "planarity": 0.583, "simple_Shear": 7.552, "simple_Stretch": 5.054, "simple_Buckle": -8.282, "simple_Propeller": 28.041, "bp_simpleParams": [ 7.552, 5.054, -1.827, -8.282, 28.041, -78.447 ], "bp_params": [ 5.768, -7.022, -1.827, 27.151, 10.848, -77.114 ], "frame": { "rmsd": null, "origin": [ 169.250, 159.887, 165.245 ], "x_axis": [ -0.531, 0.838, -0.127 ], "y_axis": [ 0.824, 0.546, 0.150 ], "z_axis": [ 0.195, -0.025, -0.981 ], "quaternion": [ 0.092, 0.475, 0.874, 0.036 ] } }, { "index": 294, "nt1": "///A/612", "nt2": "///A/2059", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "c.W", "DSSR": "c.-W", "intra_chain": true, "chi1": -174.987, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 94.730, "chi2": -117.277, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 23.479, "C1C1_dist": 10.426, "N1N9_dist": 9.256, "C6C8_dist": 10.005, "CNNC_torsion": -20.990, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.08]", "interBase_angle": 13.810, "planarity": 0.418, "simple_Shear": 6.295, "simple_Stretch": 2.181, "simple_Buckle": -3.998, "simple_Propeller": 13.218, "bp_simpleParams": [ 6.295, 2.181, 1.868, -3.998, 13.218, 9.725 ], "bp_params": [ 6.250, -2.305, 1.868, 5.305, 12.750, 9.775 ], "frame": { "rmsd": null, "origin": [ 167.889, 160.838, 166.372 ], "x_axis": [ -0.969, 0.237, -0.076 ], "y_axis": [ 0.240, 0.970, -0.039 ], "z_axis": [ 0.064, -0.056, -0.996 ], "quaternion": [ 0.035, 0.120, 0.992, -0.024 ] } }, { "index": 295, "nt1": "///A/613", "nt2": "///A/1029", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -156.487, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 112.207, "chi2": -159.412, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 39.789, "C1C1_dist": 9.944, "N1N9_dist": 9.420, "C6C8_dist": 10.760, "CNNC_torsion": -48.949, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.33],O2(carbonyl)-N6(amino)[3.60]", "interBase_angle": 42.974, "planarity": 0.584, "simple_Shear": 5.429, "simple_Stretch": 3.677, "simple_Buckle": 39.306, "simple_Propeller": -17.370, "bp_simpleParams": [ 5.429, 3.677, 1.084, 39.306, -17.370, 46.441 ], "bp_params": [ 6.556, -0.104, 1.084, 22.672, -36.506, 47.841 ], "frame": { "rmsd": null, "origin": [ 171.652, 157.061, 159.983 ], "x_axis": [ 0.953, 0.182, 0.241 ], "y_axis": [ -0.115, 0.956, -0.269 ], "z_axis": [ -0.280, 0.229, 0.932 ], "quaternion": [ 0.980, -0.127, -0.133, 0.076 ] } }, { "index": 296, "nt1": "///A/616", "nt2": "///A/2058", "bp": "A+G", "name": "--", "Saenger": "10-X", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -172.017, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 3.955, "chi2": -160.189, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 115.838, "C1C1_dist": 9.810, "N1N9_dist": 9.069, "C6C8_dist": 9.808, "CNNC_torsion": 150.083, "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[2.91],N1-N2(amino)[2.99]", "interBase_angle": 6.260, "planarity": 0.086, "simple_Shear": 1.611, "simple_Stretch": 4.893, "simple_Buckle": -1.219, "simple_Propeller": -6.140, "bp_simpleParams": [ 1.611, 4.893, -0.333, -1.219, -6.140, 63.512 ], "bp_params": [ -4.168, 3.026, -0.333, 5.476, -3.033, 63.471 ], "frame": { "rmsd": null, "origin": [ 171.462, 148.039, 174.279 ], "x_axis": [ 0.614, -0.548, -0.568 ], "y_axis": [ -0.601, 0.143, -0.787 ], "z_axis": [ 0.512, 0.824, -0.241 ], "quaternion": [ 0.616, -0.654, 0.439, 0.022 ] } }, { "index": 297, "nt1": "///A/623", "nt2": "///A/1301", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.038, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.131, "chi2": -159.831, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.175, "C1C1_dist": 10.792, "N1N9_dist": 8.965, "C6C8_dist": 9.832, "CNNC_torsion": -2.263, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.93],N1-N3(imino)[2.90]", "interBase_angle": 5.538, "planarity": 0.062, "simple_Shear": -0.028, "simple_Stretch": -0.088, "simple_Buckle": -5.144, "simple_Propeller": -2.052, "bp_simpleParams": [ -0.028, -0.088, -0.192, -5.144, -2.052, -2.763 ], "bp_params": [ -0.028, -0.088, -0.192, -5.150, -2.036, -2.761 ], "frame": { "rmsd": null, "origin": [ 156.748, 169.247, 196.595 ], "x_axis": [ 0.577, 0.805, 0.139 ], "y_axis": [ 0.632, -0.332, -0.701 ], "z_axis": [ -0.518, 0.492, -0.700 ], "quaternion": [ -0.369, 0.808, 0.445, -0.117 ] } }, { "index": 298, "nt1": "///A/624", "nt2": "///A/1300", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.431, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.099, "chi2": -163.124, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.015, "C1C1_dist": 10.615, "N1N9_dist": 8.908, "C6C8_dist": 9.866, "CNNC_torsion": -5.073, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 1.930, "planarity": 0.069, "simple_Shear": 0.206, "simple_Stretch": -0.148, "simple_Buckle": -1.924, "simple_Propeller": 0.151, "bp_simpleParams": [ 0.206, -0.148, 0.353, -1.924, 0.151, 1.125 ], "bp_params": [ 0.204, -0.151, 0.353, -1.921, 0.183, 1.124 ], "frame": { "rmsd": null, "origin": [ 154.256, 171.422, 195.224 ], "x_axis": [ 0.850, 0.467, -0.244 ], "y_axis": [ 0.245, -0.760, -0.603 ], "z_axis": [ -0.467, 0.452, -0.760 ], "quaternion": [ -0.287, 0.918, 0.194, -0.194 ] } }, { "index": 299, "nt1": "///A/625", "nt2": "///A/1299", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.907, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.192, "chi2": -165.590, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.585, "C1C1_dist": 10.692, "N1N9_dist": 8.935, "C6C8_dist": 9.850, "CNNC_torsion": -3.548, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 2.440, "planarity": 0.091, "simple_Shear": 0.169, "simple_Stretch": -0.163, "simple_Buckle": 2.321, "simple_Propeller": 0.752, "bp_simpleParams": [ 0.169, -0.163, 0.290, 2.321, 0.752, -0.570 ], "bp_params": [ 0.167, -0.165, 0.290, 2.331, 0.723, -0.570 ], "frame": { "rmsd": null, "origin": [ 152.709, 174.144, 193.707 ], "x_axis": [ 0.863, -0.049, -0.502 ], "y_axis": [ -0.275, -0.880, -0.388 ], "z_axis": [ -0.423, 0.473, -0.773 ], "quaternion": [ -0.229, 0.938, -0.086, -0.247 ] } }, { "index": 300, "nt1": "///A/626", "nt2": "///A/1298", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.377, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.769, "chi2": -161.082, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.599, "C1C1_dist": 10.701, "N1N9_dist": 8.936, "C6C8_dist": 9.856, "CNNC_torsion": -2.385, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.81]", "interBase_angle": 3.727, "planarity": 0.122, "simple_Shear": -0.170, "simple_Stretch": -0.161, "simple_Buckle": -2.622, "simple_Propeller": 2.648, "bp_simpleParams": [ -0.170, -0.161, 0.386, -2.622, 2.648, -0.204 ], "bp_params": [ -0.168, -0.163, 0.386, -2.655, 2.615, -0.204 ], "frame": { "rmsd": null, "origin": [ 152.593, 176.775, 191.470 ], "x_axis": [ 0.704, -0.623, -0.342 ], "y_axis": [ -0.692, -0.711, -0.129 ], "z_axis": [ -0.163, 0.327, -0.931 ], "quaternion": [ -0.125, 0.914, -0.359, -0.138 ] } }, { "index": 301, "nt1": "///A/627", "nt2": "///A/1297", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.896, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.276, "chi2": -165.606, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.531, "C1C1_dist": 10.772, "N1N9_dist": 8.952, "C6C8_dist": 9.858, "CNNC_torsion": 0.060, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.82]", "interBase_angle": 6.484, "planarity": 0.133, "simple_Shear": -0.186, "simple_Stretch": -0.149, "simple_Buckle": -3.252, "simple_Propeller": 5.610, "bp_simpleParams": [ -0.186, -0.149, 0.306, -3.252, 5.610, -0.123 ], "bp_params": [ -0.184, -0.152, 0.306, -3.331, 5.563, -0.123 ], "frame": { "rmsd": null, "origin": [ 153.270, 178.764, 188.399 ], "x_axis": [ 0.216, -0.930, -0.298 ], "y_axis": [ -0.958, -0.261, 0.119 ], "z_axis": [ -0.189, 0.260, -0.947 ], "quaternion": [ -0.045, 0.779, -0.606, -0.156 ] } }, { "index": 302, "nt1": "///A/628", "nt2": "///A/1296", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.488, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.519, "chi2": 167.054, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.273, "C1C1_dist": 10.762, "N1N9_dist": 8.903, "C6C8_dist": 9.807, "CNNC_torsion": -3.829, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 9.259, "planarity": 0.201, "simple_Shear": 0.222, "simple_Stretch": -0.224, "simple_Buckle": -1.917, "simple_Propeller": 9.058, "bp_simpleParams": [ 0.222, -0.224, 0.750, -1.917, 9.058, 1.076 ], "bp_params": [ 0.218, -0.227, 0.750, -1.770, 9.088, 1.079 ], "frame": { "rmsd": null, "origin": [ 153.997, 178.743, 184.802 ], "x_axis": [ -0.423, -0.905, -0.042 ], "y_axis": [ -0.868, 0.391, 0.307 ], "z_axis": [ -0.261, 0.166, -0.951 ], "quaternion": [ -0.066, -0.533, 0.831, 0.142 ] } }, { "index": 303, "nt1": "///A/629", "nt2": "///A/1294", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -158.373, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 91.301, "chi2": -157.542, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 13.366, "C1C1_dist": 10.236, "N1N9_dist": 8.928, "C6C8_dist": 9.401, "CNNC_torsion": -85.899, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[3.15],N3-N6(amino)[2.99]", "interBase_angle": 21.369, "planarity": 0.353, "simple_Shear": 6.815, "simple_Stretch": 2.316, "simple_Buckle": 1.050, "simple_Propeller": -21.343, "bp_simpleParams": [ 6.815, 2.316, 1.561, 1.050, -21.343, -8.347 ], "bp_params": [ 6.455, -3.184, 1.561, -14.364, -15.821, -8.362 ], "frame": { "rmsd": null, "origin": [ 155.022, 179.222, 180.651 ], "x_axis": [ -0.817, -0.192, 0.543 ], "y_axis": [ -0.265, 0.963, -0.059 ], "z_axis": [ -0.512, -0.192, -0.838 ], "quaternion": [ -0.277, -0.120, 0.951, -0.066 ] } }, { "index": 304, "nt1": "///A/630", "nt2": "///A/856", "bp": "A+G", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -121.996, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.356, "chi2": 177.828, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 86.742, "C1C1_dist": 8.259, "N1N9_dist": 7.784, "C6C8_dist": 9.926, "CNNC_torsion": 152.025, "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.41],N3-N2(amino)[3.30]", "interBase_angle": 38.117, "planarity": 0.481, "simple_Shear": 6.812, "simple_Stretch": 3.177, "simple_Buckle": 27.041, "simple_Propeller": -26.864, "bp_simpleParams": [ 6.812, 3.177, -2.173, 27.041, -26.864, 152.549 ], "bp_params": [ 2.676, 7.024, -2.173, 38.114, -0.442, 151.023 ], "frame": { "rmsd": null, "origin": [ 158.154, 179.841, 173.477 ], "x_axis": [ 0.447, -0.817, 0.365 ], "y_axis": [ -0.792, -0.171, 0.587 ], "z_axis": [ -0.417, -0.551, -0.723 ], "quaternion": [ 0.372, 0.765, -0.526, -0.017 ] } }, { "index": 305, "nt1": "///A/631", "nt2": "///A/857", "bp": "G+U", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": -125.431, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 27.303, "chi2": -161.953, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 104.209, "C1C1_dist": 9.300, "N1N9_dist": 8.402, "C6C8_dist": 8.628, "CNNC_torsion": 5.425, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)*O2(carbonyl)[3.31]", "interBase_angle": 4.792, "planarity": 0.061, "simple_Shear": -0.204, "simple_Stretch": 4.485, "simple_Buckle": -4.723, "simple_Propeller": 0.806, "bp_simpleParams": [ -0.204, 4.485, -0.118, -4.723, 0.806, 49.549 ], "bp_params": [ -4.458, -0.536, -0.118, -0.453, -4.770, 49.586 ], "frame": { "rmsd": null, "origin": [ 158.382, 181.082, 166.259 ], "x_axis": [ 0.460, -0.830, 0.315 ], "y_axis": [ -0.657, -0.080, 0.750 ], "z_axis": [ -0.597, -0.552, -0.582 ], "quaternion": [ 0.447, 0.728, -0.510, -0.097 ] } }, { "index": 306, "nt1": "///A/632", "nt2": "///A/717", "bp": "U+A", "name": "--", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -169.293, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 15.548, "chi2": -78.049, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 91.246, "C1C1_dist": 8.710, "N1N9_dist": 7.510, "C6C8_dist": 8.810, "CNNC_torsion": 138.478, "hbonds_num": 1, "hbonds_desc": "N3(imino)-N3[3.18]", "interBase_angle": 20.078, "planarity": 0.310, "simple_Shear": 2.636, "simple_Stretch": 1.890, "simple_Buckle": -6.057, "simple_Propeller": -19.142, "bp_simpleParams": [ 2.636, 1.890, 0.052, -6.057, -19.142, 96.089 ], "bp_params": [ -0.750, 3.156, 0.052, 15.448, -12.825, 95.927 ], "frame": { "rmsd": null, "origin": [ 155.656, 196.860, 168.523 ], "x_axis": [ 0.923, 0.222, -0.314 ], "y_axis": [ 0.061, -0.890, -0.451 ], "z_axis": [ -0.379, 0.397, -0.836 ], "quaternion": [ -0.222, 0.955, 0.074, -0.181 ] } }, { "index": 307, "nt1": "///A/633", "nt2": "///A/715", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -151.291, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.232, "chi2": -170.963, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.074, "C1C1_dist": 10.525, "N1N9_dist": 8.843, "C6C8_dist": 9.800, "CNNC_torsion": -1.478, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.85],O4(carbonyl)-N6(amino)[2.94]", "interBase_angle": 7.363, "planarity": 0.136, "simple_Shear": -0.022, "simple_Stretch": -0.134, "simple_Buckle": -5.898, "simple_Propeller": -4.408, "bp_simpleParams": [ -0.022, -0.134, -0.321, -5.898, -4.408, 0.114 ], "bp_params": [ -0.021, -0.134, -0.321, -5.872, -4.442, 0.114 ], "frame": { "rmsd": null, "origin": [ 155.334, 197.474, 165.549 ], "x_axis": [ 0.158, -0.873, -0.462 ], "y_axis": [ -0.954, -0.255, 0.156 ], "z_axis": [ -0.254, 0.416, -0.873 ], "quaternion": [ -0.086, 0.756, -0.604, -0.237 ] } }, { "index": 308, "nt1": "///A/634", "nt2": "///A/714", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.919, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.471, "chi2": -148.487, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.215, "C1C1_dist": 10.908, "N1N9_dist": 9.043, "C6C8_dist": 9.874, "CNNC_torsion": 3.555, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.90],N1-N3(imino)[2.93]", "interBase_angle": 7.341, "planarity": 0.089, "simple_Shear": 0.132, "simple_Stretch": -0.048, "simple_Buckle": -4.307, "simple_Propeller": 5.945, "bp_simpleParams": [ 0.132, -0.048, -0.215, -4.307, 5.945, -4.520 ], "bp_params": [ 0.131, -0.050, -0.215, -4.205, 6.017, -4.523 ], "frame": { "rmsd": null, "origin": [ 155.584, 199.598, 162.435 ], "x_axis": [ -0.240, -0.945, -0.224 ], "y_axis": [ -0.913, 0.141, 0.382 ], "z_axis": [ -0.330, 0.296, -0.896 ], "quaternion": [ -0.035, -0.616, 0.754, 0.225 ] } }, { "index": 309, "nt1": "///A/635", "nt2": "///A/713", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.818, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.579, "chi2": -166.018, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.887, "C1C1_dist": 10.727, "N1N9_dist": 8.942, "C6C8_dist": 9.860, "CNNC_torsion": -1.351, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 3.372, "planarity": 0.066, "simple_Shear": 0.203, "simple_Stretch": -0.145, "simple_Buckle": 1.561, "simple_Propeller": 2.988, "bp_simpleParams": [ 0.203, -0.145, 0.120, 1.561, 2.988, 0.312 ], "bp_params": [ 0.201, -0.148, 0.120, 1.608, 2.964, 0.312 ], "frame": { "rmsd": null, "origin": [ 154.932, 199.122, 158.981 ], "x_axis": [ -0.663, -0.736, 0.139 ], "y_axis": [ -0.630, 0.649, 0.426 ], "z_axis": [ -0.404, 0.195, -0.894 ], "quaternion": [ -0.152, -0.381, 0.895, 0.174 ] } }, { "index": 310, "nt1": "///A/636", "nt2": "///A/712", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.032, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.268, "chi2": -174.034, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.078, "C1C1_dist": 10.760, "N1N9_dist": 8.931, "C6C8_dist": 9.837, "CNNC_torsion": -1.309, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.81]", "interBase_angle": 7.352, "planarity": 0.150, "simple_Shear": -0.181, "simple_Stretch": -0.190, "simple_Buckle": 0.707, "simple_Propeller": 7.318, "bp_simpleParams": [ -0.181, -0.190, 0.508, 0.707, 7.318, -0.093 ], "bp_params": [ -0.178, -0.192, 0.508, 0.614, 7.326, -0.093 ], "frame": { "rmsd": null, "origin": [ 153.947, 197.220, 155.908 ], "x_axis": [ -0.785, -0.359, 0.504 ], "y_axis": [ -0.269, 0.931, 0.245 ], "z_axis": [ -0.557, 0.056, -0.828 ], "quaternion": [ -0.282, -0.167, 0.941, 0.080 ] } }, { "index": 311, "nt1": "///A/637", "nt2": "///A/711", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 176.363, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.298, "chi2": 172.521, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.013, "C1C1_dist": 10.723, "N1N9_dist": 8.912, "C6C8_dist": 9.845, "CNNC_torsion": 3.858, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.99],N1-N3(imino)[2.88]", "interBase_angle": 9.343, "planarity": 0.116, "simple_Shear": 0.046, "simple_Stretch": -0.084, "simple_Buckle": 0.828, "simple_Propeller": 9.306, "bp_simpleParams": [ 0.046, -0.084, 0.241, 0.828, 9.306, 0.651 ], "bp_params": [ 0.045, -0.085, 0.241, 0.920, 9.297, 0.653 ], "frame": { "rmsd": null, "origin": [ 151.847, 195.042, 153.658 ], "x_axis": [ -0.733, 0.274, 0.622 ], "y_axis": [ 0.204, 0.962, -0.183 ], "z_axis": [ -0.649, -0.007, -0.761 ], "quaternion": [ -0.342, 0.128, 0.930, -0.051 ] } }, { "index": 312, "nt1": "///A/638", "nt2": "///A/710", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.884, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 69.612, "chi2": -171.608, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 45.129, "C1C1_dist": 10.512, "N1N9_dist": 8.963, "C6C8_dist": 9.997, "CNNC_torsion": 5.284, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.94],N3(imino)-O6(carbonyl)[3.19]", "interBase_angle": 13.264, "planarity": 0.217, "simple_Shear": 2.200, "simple_Stretch": 0.275, "simple_Buckle": 4.986, "simple_Propeller": 12.292, "bp_simpleParams": [ 2.200, 0.275, 0.227, 4.986, 12.292, 5.931 ], "bp_params": [ 2.206, -0.215, 0.227, 7.550, 10.906, 5.945 ], "frame": { "rmsd": null, "origin": [ 148.846, 193.648, 151.986 ], "x_axis": [ -0.414, 0.820, 0.395 ], "y_axis": [ 0.579, 0.572, -0.581 ], "z_axis": [ -0.702, -0.012, -0.712 ], "quaternion": [ -0.334, 0.426, 0.821, -0.180 ] } }, { "index": 313, "nt1": "///A/639", "nt2": "///A/709", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.032, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.093, "chi2": -170.241, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.642, "C1C1_dist": 10.657, "N1N9_dist": 8.919, "C6C8_dist": 9.854, "CNNC_torsion": 1.179, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 3.186, "planarity": 0.078, "simple_Shear": 0.222, "simple_Stretch": -0.165, "simple_Buckle": 1.666, "simple_Propeller": -2.716, "bp_simpleParams": [ 0.222, -0.165, -0.350, 1.666, -2.716, 0.538 ], "bp_params": [ 0.219, -0.169, -0.350, 1.619, -2.745, 0.538 ], "frame": { "rmsd": null, "origin": [ 145.174, 192.980, 151.619 ], "x_axis": [ -0.014, 0.977, 0.212 ], "y_axis": [ 0.528, 0.187, -0.829 ], "z_axis": [ -0.849, 0.100, -0.518 ], "quaternion": [ -0.405, 0.574, 0.656, -0.278 ] } }, { "index": 314, "nt1": "///A/640", "nt2": "///A/708", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.273, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.230, "chi2": -166.926, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 43.476, "C1C1_dist": 10.905, "N1N9_dist": 8.831, "C6C8_dist": 9.518, "CNNC_torsion": 2.501, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)*O4(carbonyl)[3.10]", "interBase_angle": 8.352, "planarity": 0.100, "simple_Shear": 0.489, "simple_Stretch": -0.453, "simple_Buckle": -0.991, "simple_Propeller": 8.293, "bp_simpleParams": [ 0.489, -0.453, 0.277, -0.991, 8.293, -17.982 ], "bp_params": [ 0.466, -0.476, 0.277, -0.584, 8.331, -18.029 ], "frame": { "rmsd": null, "origin": [ 141.319, 192.315, 151.292 ], "x_axis": [ 0.399, 0.896, -0.196 ], "y_axis": [ 0.460, -0.380, -0.803 ], "z_axis": [ -0.793, 0.230, -0.564 ], "quaternion": [ -0.337, 0.765, 0.443, -0.323 ] } }, { "index": 315, "nt1": "///A/641", "nt2": "///A/707", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.335, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.429, "chi2": -174.309, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.045, "C1C1_dist": 10.620, "N1N9_dist": 8.878, "C6C8_dist": 9.829, "CNNC_torsion": 2.261, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 7.691, "planarity": 0.142, "simple_Shear": 0.234, "simple_Stretch": -0.181, "simple_Buckle": 4.717, "simple_Propeller": 6.075, "bp_simpleParams": [ 0.234, -0.181, 0.207, 4.717, 6.075, 1.146 ], "bp_params": [ 0.230, -0.186, 0.207, 4.834, 5.983, 1.147 ], "frame": { "rmsd": null, "origin": [ 138.857, 195.077, 150.393 ], "x_axis": [ 0.612, 0.548, -0.570 ], "y_axis": [ 0.171, -0.796, -0.581 ], "z_axis": [ -0.772, 0.258, -0.580 ], "quaternion": [ -0.243, 0.864, 0.208, -0.388 ] } }, { "index": 316, "nt1": "///A/642", "nt2": "///A/706", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.713, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.093, "chi2": -169.795, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.191, "C1C1_dist": 10.627, "N1N9_dist": 8.879, "C6C8_dist": 9.807, "CNNC_torsion": 3.853, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 7.250, "planarity": 0.099, "simple_Shear": -0.138, "simple_Stretch": -0.193, "simple_Buckle": -7.180, "simple_Propeller": 1.000, "bp_simpleParams": [ -0.138, -0.193, -0.490, -7.180, 1.000, -0.090 ], "bp_params": [ -0.136, -0.194, -0.490, -7.190, 0.927, -0.090 ], "frame": { "rmsd": null, "origin": [ 136.910, 198.070, 148.909 ], "x_axis": [ 0.769, -0.077, -0.635 ], "y_axis": [ -0.346, -0.885, -0.311 ], "z_axis": [ -0.538, 0.459, -0.707 ], "quaternion": [ -0.210, 0.917, -0.116, -0.320 ] } }, { "index": 317, "nt1": "///A/643", "nt2": "///A/705", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.253, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.543, "chi2": -147.556, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.890, "C1C1_dist": 10.504, "N1N9_dist": 8.841, "C6C8_dist": 9.830, "CNNC_torsion": 2.790, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.85],O4(carbonyl)-N6(amino)[3.04]", "interBase_angle": 2.058, "planarity": 0.092, "simple_Shear": 0.040, "simple_Stretch": -0.111, "simple_Buckle": -0.827, "simple_Propeller": 1.885, "bp_simpleParams": [ 0.040, -0.111, -0.403, -0.827, 1.885, 2.416 ], "bp_params": [ 0.040, -0.111, -0.403, -0.829, 1.884, 2.416 ], "frame": { "rmsd": null, "origin": [ 135.825, 200.614, 146.747 ], "x_axis": [ 0.567, -0.522, -0.637 ], "y_axis": [ -0.662, -0.749, 0.024 ], "z_axis": [ -0.490, 0.408, -0.770 ], "quaternion": [ -0.109, 0.878, -0.337, -0.321 ] } }, { "index": 318, "nt1": "///A/644", "nt2": "///A/704", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.274, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 45.440, "chi2": -165.680, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.907, "C1C1_dist": 10.448, "N1N9_dist": 8.678, "C6C8_dist": 9.532, "CNNC_torsion": -5.142, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.88],N1(imino)-O2(carbonyl)[2.95],N2(amino)-O2(carbonyl)[3.16]", "interBase_angle": 9.087, "planarity": 0.219, "simple_Shear": -1.459, "simple_Stretch": -0.391, "simple_Buckle": 2.458, "simple_Propeller": 8.748, "bp_simpleParams": [ -1.459, -0.391, 0.864, 2.458, 8.748, -2.205 ], "bp_params": [ -1.389, -0.593, 0.864, 1.194, 9.008, -2.212 ], "frame": { "rmsd": null, "origin": [ 135.602, 202.267, 143.702 ], "x_axis": [ 0.274, -0.899, -0.342 ], "y_axis": [ -0.831, -0.400, 0.386 ], "z_axis": [ -0.484, 0.178, -0.857 ], "quaternion": [ 0.065, 0.795, -0.544, -0.259 ] } }, { "index": 319, "nt1": "///A/645", "nt2": "///A/703", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.988, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.936, "chi2": -169.167, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.625, "C1C1_dist": 10.574, "N1N9_dist": 8.856, "C6C8_dist": 9.805, "CNNC_torsion": -1.475, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 9.370, "planarity": 0.233, "simple_Shear": 0.275, "simple_Stretch": -0.199, "simple_Buckle": 6.658, "simple_Propeller": 6.593, "bp_simpleParams": [ 0.275, -0.199, 0.581, 6.658, 6.593, 2.077 ], "bp_params": [ 0.270, -0.206, 0.581, 6.816, 6.431, 2.076 ], "frame": { "rmsd": null, "origin": [ 135.335, 202.354, 140.276 ], "x_axis": [ -0.222, -0.975, 0.013 ], "y_axis": [ -0.866, 0.203, 0.457 ], "z_axis": [ -0.448, 0.090, -0.889 ], "quaternion": [ -0.151, -0.605, 0.761, 0.180 ] } }, { "index": 320, "nt1": "///A/647", "nt2": "///A/671", "bp": "A+G", "name": "Linker", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -107.809, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 56.645, "chi2": -156.975, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 95.161, "C1C1_dist": 8.578, "N1N9_dist": 8.339, "C6C8_dist": 10.558, "CNNC_torsion": 161.106, "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.80],N3-N2(amino)[3.85]", "interBase_angle": 25.956, "planarity": 0.296, "simple_Shear": 6.940, "simple_Stretch": 4.466, "simple_Buckle": 22.690, "simple_Propeller": -12.604, "bp_simpleParams": [ 6.940, 4.466, -0.602, 22.690, -12.604, 140.737 ], "bp_params": [ 2.243, 7.942, -0.602, 25.327, 5.681, 139.879 ], "frame": { "rmsd": null, "origin": [ 142.141, 209.697, 135.446 ], "x_axis": [ 0.821, -0.406, 0.401 ], "y_axis": [ -0.224, -0.875, -0.428 ], "z_axis": [ 0.525, 0.262, -0.810 ], "quaternion": [ -0.184, 0.936, -0.168, 0.247 ] } }, { "index": 321, "nt1": "///A/648", "nt2": "///A/670", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -91.782, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 47.798, "chi2": -163.030, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.831, "C1C1_dist": 10.738, "N1N9_dist": 8.834, "C6C8_dist": 9.681, "CNNC_torsion": 17.517, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.81],N1(imino)-N3[2.82],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 13.667, "planarity": 0.190, "simple_Shear": -0.183, "simple_Stretch": -0.307, "simple_Buckle": -3.147, "simple_Propeller": 13.300, "bp_simpleParams": [ -0.183, -0.307, -0.435, -3.147, 13.300, -3.650 ], "bp_params": [ -0.179, -0.310, -0.435, -3.332, 13.254, -3.673 ], "frame": { "rmsd": null, "origin": [ 141.983, 212.465, 139.856 ], "x_axis": [ 0.215, 0.977, -0.011 ], "y_axis": [ -0.873, 0.187, -0.451 ], "z_axis": [ -0.439, 0.107, 0.892 ], "quaternion": [ 0.757, -0.184, -0.141, 0.610 ] } }, { "index": 322, "nt1": "///A/649", "nt2": "///A/669", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.969, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.167, "chi2": -168.711, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.029, "C1C1_dist": 10.927, "N1N9_dist": 9.014, "C6C8_dist": 9.839, "CNNC_torsion": 14.267, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.93],N2(amino)-O2(carbonyl)[2.87]", "interBase_angle": 14.227, "planarity": 0.196, "simple_Shear": -0.202, "simple_Stretch": -0.159, "simple_Buckle": 5.767, "simple_Propeller": 13.006, "bp_simpleParams": [ -0.202, -0.159, -0.327, 5.767, 13.006, -3.629 ], "bp_params": [ -0.200, -0.162, -0.327, 5.591, 13.082, -3.648 ], "frame": { "rmsd": null, "origin": [ 141.533, 213.761, 142.877 ], "x_axis": [ -0.229, 0.915, -0.331 ], "y_axis": [ -0.850, -0.354, -0.390 ], "z_axis": [ -0.474, 0.192, 0.859 ], "quaternion": [ 0.565, -0.258, -0.063, 0.781 ] } }, { "index": 323, "nt1": "///A/650", "nt2": "///A/668", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.370, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.645, "chi2": 177.883, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 40.773, "C1C1_dist": 10.661, "N1N9_dist": 8.901, "C6C8_dist": 9.757, "CNNC_torsion": 10.326, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.90],N3(imino)-O6(carbonyl)[2.90]", "interBase_angle": 12.782, "planarity": 0.178, "simple_Shear": 2.149, "simple_Stretch": 0.018, "simple_Buckle": 4.962, "simple_Propeller": 11.779, "bp_simpleParams": [ 2.149, 0.018, -0.139, 4.962, 11.779, -3.013 ], "bp_params": [ 2.103, -0.443, -0.139, 7.360, 10.449, -3.020 ], "frame": { "rmsd": null, "origin": [ 140.887, 216.572, 145.816 ], "x_axis": [ -0.668, 0.511, -0.541 ], "y_axis": [ -0.559, -0.824, -0.088 ], "z_axis": [ -0.491, 0.243, 0.836 ], "quaternion": [ 0.293, -0.283, 0.043, 0.912 ] } }, { "index": 324, "nt1": "///A/651", "nt2": "///A/667", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -167.825, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 46.849, "chi2": -171.968, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 10.909, "C1C1_dist": 9.543, "N1N9_dist": 7.216, "C6C8_dist": 6.646, "CNNC_torsion": 179.052, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.62],N3(imino)-N7[3.19]", "interBase_angle": 11.405, "planarity": 0.167, "simple_Shear": 5.525, "simple_Stretch": 1.221, "simple_Buckle": 3.760, "simple_Propeller": -10.767, "bp_simpleParams": [ 5.525, 1.221, 0.134, 3.760, -10.767, -78.110 ], "bp_params": [ 4.696, -3.156, 0.134, -5.206, -10.147, -78.273 ], "frame": { "rmsd": null, "origin": [ 143.035, 219.878, 151.076 ], "x_axis": [ -0.961, -0.026, -0.274 ], "y_axis": [ -0.052, -0.961, 0.272 ], "z_axis": [ -0.270, 0.275, 0.923 ], "quaternion": [ 0.007, -0.139, 0.139, 0.980 ] } }, { "index": 325, "nt1": "///A/653", "nt2": "///A/665", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -173.780, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 9.534, "chi2": -153.147, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 93.410, "C1C1_dist": 9.614, "N1N9_dist": 8.342, "C6C8_dist": 8.733, "CNNC_torsion": 81.923, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.88],N6(amino)-O2'(hydroxyl)[2.92],N6(amino)-N3[2.88]", "interBase_angle": 11.260, "planarity": 0.326, "simple_Shear": -7.204, "simple_Stretch": 1.981, "simple_Buckle": -10.742, "simple_Propeller": -3.377, "bp_simpleParams": [ -7.204, 1.981, -1.322, -10.742, -3.377, -5.770 ], "bp_params": [ -6.352, -3.934, -1.322, -4.838, -10.168, -5.787 ], "frame": { "rmsd": null, "origin": [ 138.101, 220.939, 155.419 ], "x_axis": [ -0.605, -0.567, -0.560 ], "y_axis": [ 0.396, -0.824, 0.406 ], "z_axis": [ -0.691, 0.024, 0.722 ], "quaternion": [ -0.271, -0.352, 0.121, 0.887 ] } }, { "index": 326, "nt1": "///A/654", "nt2": "///A/664", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.316, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.294, "chi2": -122.568, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 54.287, "C1C1_dist": 10.586, "N1N9_dist": 8.815, "C6C8_dist": 9.663, "CNNC_torsion": 16.321, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.87],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 12.418, "planarity": 0.272, "simple_Shear": -0.058, "simple_Stretch": -0.399, "simple_Buckle": -12.288, "simple_Propeller": 1.790, "bp_simpleParams": [ -0.058, -0.399, -1.433, -12.288, 1.790, -3.059 ], "bp_params": [ -0.057, -0.399, -1.433, -12.292, 1.760, -3.042 ], "frame": { "rmsd": null, "origin": [ 134.779, 221.334, 158.625 ], "x_axis": [ 0.025, -0.993, 0.118 ], "y_axis": [ 0.742, 0.097, 0.663 ], "z_axis": [ -0.670, 0.071, 0.739 ], "quaternion": [ 0.682, 0.217, -0.289, -0.636 ] } }, { "index": 327, "nt1": "///A/655", "nt2": "///A/663", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.059, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.704, "chi2": -167.249, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.593, "C1C1_dist": 10.790, "N1N9_dist": 8.921, "C6C8_dist": 9.787, "CNNC_torsion": 4.959, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.82],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.88]", "interBase_angle": 2.374, "planarity": 0.143, "simple_Shear": 0.196, "simple_Stretch": -0.241, "simple_Buckle": 0.272, "simple_Propeller": 2.358, "bp_simpleParams": [ 0.196, -0.241, -0.666, 0.272, 2.358, -2.390 ], "bp_params": [ 0.193, -0.243, -0.666, 0.307, 2.354, -2.390 ], "frame": { "rmsd": null, "origin": [ 131.948, 221.130, 160.606 ], "x_axis": [ 0.474, -0.804, 0.359 ], "y_axis": [ 0.656, 0.595, 0.466 ], "z_axis": [ -0.588, 0.015, 0.809 ], "quaternion": [ 0.848, 0.133, -0.279, -0.430 ] } }, { "index": 328, "nt1": "///A/656", "nt2": "///A/662", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.843, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.822, "chi2": -170.208, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.073, "C1C1_dist": 10.628, "N1N9_dist": 8.894, "C6C8_dist": 9.839, "CNNC_torsion": 8.057, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.96],N1-N3(imino)[2.86]", "interBase_angle": 13.303, "planarity": 0.159, "simple_Shear": 0.145, "simple_Stretch": -0.096, "simple_Buckle": 2.010, "simple_Propeller": 13.151, "bp_simpleParams": [ 0.145, -0.096, 0.263, 2.010, 13.151, 0.572 ], "bp_params": [ 0.143, -0.099, 0.263, 2.269, 13.108, 0.576 ], "frame": { "rmsd": null, "origin": [ 129.969, 218.899, 163.052 ], "x_axis": [ 0.818, -0.432, 0.381 ], "y_axis": [ 0.343, 0.897, 0.279 ], "z_axis": [ -0.462, -0.097, 0.881 ], "quaternion": [ 0.948, 0.099, -0.222, -0.204 ] } }, { "index": 329, "nt1": "///A/657", "nt2": "///A/661", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": 177.047, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 100.016, "chi2": 175.851, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 4.258, "C1C1_dist": 9.430, "N1N9_dist": 8.332, "C6C8_dist": 8.726, "CNNC_torsion": -150.904, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[2.92],N2(amino)-N7[2.95],N3-N6(amino)[3.20]", "interBase_angle": 15.597, "planarity": 0.215, "simple_Shear": 7.698, "simple_Stretch": 2.729, "simple_Buckle": 1.236, "simple_Propeller": 15.548, "bp_simpleParams": [ 7.698, 2.729, 0.051, 1.236, 15.548, -5.211 ], "bp_params": [ 6.866, -4.423, 0.051, 13.054, 8.535, -5.192 ], "frame": { "rmsd": null, "origin": [ 129.098, 217.258, 165.626 ], "x_axis": [ 0.718, 0.576, 0.390 ], "y_axis": [ -0.586, 0.803, -0.106 ], "z_axis": [ -0.374, -0.153, 0.915 ], "quaternion": [ 0.927, 0.013, -0.206, 0.314 ] } }, { "index": 330, "nt1": "///A/666", "nt2": "///A/668", "bp": "G+G", "name": "--", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -126.783, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 119.781, "chi2": 177.883, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 33.247, "C1C1_dist": 8.779, "N1N9_dist": 8.343, "C6C8_dist": 8.608, "CNNC_torsion": 65.002, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O6(carbonyl)[2.91]", "interBase_angle": 45.980, "planarity": 0.572, "simple_Shear": 0.097, "simple_Stretch": 6.354, "simple_Buckle": -45.762, "simple_Propeller": 4.478, "bp_simpleParams": [ 0.097, 6.354, -1.772, -45.762, 4.478, -25.373 ], "bp_params": [ 6.345, -0.364, -1.772, 6.162, 45.565, -27.410 ], "frame": { "rmsd": null, "origin": [ 138.319, 216.815, 146.968 ], "x_axis": [ -0.937, 0.333, -0.108 ], "y_axis": [ 0.338, 0.940, -0.034 ], "z_axis": [ 0.090, -0.068, -0.994 ], "quaternion": [ 0.050, 0.171, 0.984, -0.026 ] } }, { "index": 331, "nt1": "///A/674", "nt2": "///A/681", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.631, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.526, "chi2": -163.470, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.846, "C1C1_dist": 10.621, "N1N9_dist": 8.896, "C6C8_dist": 9.861, "CNNC_torsion": 3.563, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 9.001, "planarity": 0.143, "simple_Shear": -0.238, "simple_Stretch": -0.151, "simple_Buckle": -3.713, "simple_Propeller": 8.200, "bp_simpleParams": [ -0.238, -0.151, 0.155, -3.713, 8.200, 1.724 ], "bp_params": [ -0.235, -0.156, 0.155, -3.873, 8.126, 1.727 ], "frame": { "rmsd": null, "origin": [ 156.171, 213.813, 125.424 ], "x_axis": [ -0.194, 0.620, 0.760 ], "y_axis": [ -0.421, -0.752, 0.507 ], "z_axis": [ 0.886, -0.222, 0.408 ], "quaternion": [ 0.340, 0.536, 0.093, 0.767 ] } }, { "index": 332, "nt1": "///A/675", "nt2": "///A/680", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.325, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.035, "chi2": -166.021, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.051, "C1C1_dist": 10.669, "N1N9_dist": 8.919, "C6C8_dist": 9.853, "CNNC_torsion": 8.167, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 12.392, "planarity": 0.170, "simple_Shear": 0.202, "simple_Stretch": -0.151, "simple_Buckle": 5.171, "simple_Propeller": 11.261, "bp_simpleParams": [ 0.202, -0.151, -0.062, 5.171, 11.261, 0.588 ], "bp_params": [ 0.199, -0.154, -0.062, 5.357, 11.174, 0.590 ], "frame": { "rmsd": null, "origin": [ 159.458, 214.427, 126.250 ], "x_axis": [ -0.438, 0.167, 0.883 ], "y_axis": [ -0.231, -0.971, 0.069 ], "z_axis": [ 0.869, -0.174, 0.464 ], "quaternion": [ 0.117, 0.517, -0.031, 0.847 ] } }, { "index": 333, "nt1": "///A/676", "nt2": "///A/679", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -157.335, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 87.040, "chi2": -157.651, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 21.605, "C1C1_dist": 10.118, "N1N9_dist": 8.889, "C6C8_dist": 8.791, "CNNC_torsion": -153.918, "hbonds_num": 3, "hbonds_desc": "N1(imino)-OP2[3.00],N2(amino)-OP2[2.29],N2(amino)-N7[3.28]", "interBase_angle": 23.822, "planarity": 0.353, "simple_Shear": 8.128, "simple_Stretch": 5.267, "simple_Buckle": 5.554, "simple_Propeller": 23.166, "bp_simpleParams": [ 8.128, 5.267, -0.208, 5.554, 23.166, -47.027 ], "bp_params": [ 8.028, -5.418, -0.208, 23.480, 4.026, -46.174 ], "frame": { "rmsd": null, "origin": [ 164.068, 216.390, 125.207 ], "x_axis": [ -0.451, -0.702, 0.551 ], "y_axis": [ 0.281, -0.698, -0.659 ], "z_axis": [ 0.847, -0.142, 0.512 ], "quaternion": [ -0.301, 0.429, -0.246, 0.816 ] } }, { "index": 334, "nt1": "///A/683", "nt2": "///A/697", "bp": "A+G", "name": "Linker", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -106.181, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 59.017, "chi2": -174.520, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 88.366, "C1C1_dist": 8.554, "N1N9_dist": 8.213, "C6C8_dist": 10.516, "CNNC_torsion": 163.481, "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.80],N3-N2(amino)[3.39]", "interBase_angle": 17.933, "planarity": 0.215, "simple_Shear": 7.039, "simple_Stretch": 4.138, "simple_Buckle": 11.069, "simple_Propeller": -14.109, "bp_simpleParams": [ 7.039, 4.138, -0.628, 11.069, -14.109, 150.352 ], "bp_params": [ 2.483, 7.779, -0.628, 17.655, -3.143, 150.023 ], "frame": { "rmsd": null, "origin": [ 153.353, 203.984, 121.160 ], "x_axis": [ 0.326, -0.430, 0.842 ], "y_axis": [ -0.684, 0.508, 0.524 ], "z_axis": [ -0.653, -0.747, -0.128 ], "quaternion": [ 0.653, 0.486, -0.572, 0.097 ] } }, { "index": 335, "nt1": "///A/684", "nt2": "///A/696", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -153.714, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.890, "chi2": -149.169, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.741, "C1C1_dist": 10.623, "N1N9_dist": 8.881, "C6C8_dist": 9.805, "CNNC_torsion": 0.941, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.99],N1(imino)-N3[2.93],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 14.730, "planarity": 0.199, "simple_Shear": -0.253, "simple_Stretch": -0.190, "simple_Buckle": -12.878, "simple_Propeller": -7.150, "bp_simpleParams": [ -0.253, -0.190, -0.975, -12.878, -7.150, 2.082 ], "bp_params": [ -0.250, -0.194, -0.975, -12.771, -7.339, 2.073 ], "frame": { "rmsd": null, "origin": [ 158.264, 203.940, 119.513 ], "x_axis": [ 0.005, -0.631, -0.775 ], "y_axis": [ -0.413, 0.705, -0.577 ], "z_axis": [ 0.911, 0.323, -0.257 ], "quaternion": [ 0.603, -0.373, 0.700, -0.091 ] } }, { "index": 336, "nt1": "///A/685", "nt2": "///A/695", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.625, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 60.468, "chi2": -155.375, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 44.358, "C1C1_dist": 10.497, "N1N9_dist": 8.719, "C6C8_dist": 9.549, "CNNC_torsion": 3.734, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.98],O2(carbonyl)-N2(amino)[3.25],N3(imino)-O6(carbonyl)[2.90]", "interBase_angle": 5.323, "planarity": 0.199, "simple_Shear": 1.560, "simple_Stretch": -0.356, "simple_Buckle": 4.084, "simple_Propeller": -3.414, "bp_simpleParams": [ 1.560, -0.356, -0.998, 4.084, -3.414, -3.778 ], "bp_params": [ 1.488, -0.589, -0.998, 3.518, -3.994, -3.778 ], "frame": { "rmsd": null, "origin": [ 161.016, 204.404, 119.088 ], "x_axis": [ -0.298, -0.135, -0.945 ], "y_axis": [ -0.343, 0.939, -0.026 ], "z_axis": [ 0.891, 0.316, -0.326 ], "quaternion": [ 0.574, -0.149, 0.800, 0.091 ] } }, { "index": 337, "nt1": "///A/686", "nt2": "///A/694", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.699, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.196, "chi2": -173.279, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.314, "C1C1_dist": 10.687, "N1N9_dist": 8.906, "C6C8_dist": 9.824, "CNNC_torsion": 15.103, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 18.375, "planarity": 0.239, "simple_Shear": 0.071, "simple_Stretch": -0.179, "simple_Buckle": 6.666, "simple_Propeller": 17.123, "bp_simpleParams": [ 0.071, -0.179, -0.398, 6.666, 17.123, -0.954 ], "bp_params": [ 0.070, -0.180, -0.398, 6.756, 17.088, -0.963 ], "frame": { "rmsd": null, "origin": [ 164.015, 203.957, 117.534 ], "x_axis": [ -0.715, 0.268, -0.645 ], "y_axis": [ -0.107, 0.871, 0.480 ], "z_axis": [ 0.691, 0.412, -0.594 ], "quaternion": [ 0.375, 0.045, 0.892, 0.250 ] } }, { "index": 338, "nt1": "///A/687", "nt2": "///A/693", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -132.963, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.379, "chi2": -175.257, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 41.626, "C1C1_dist": 10.603, "N1N9_dist": 8.857, "C6C8_dist": 9.608, "CNNC_torsion": 28.380, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.16],N3(imino)-O6(carbonyl)[3.03]", "interBase_angle": 39.882, "planarity": 0.524, "simple_Shear": 1.295, "simple_Stretch": -0.003, "simple_Buckle": 25.455, "simple_Propeller": 30.702, "bp_simpleParams": [ 1.295, -0.003, -0.967, 25.455, 30.702, -9.625 ], "bp_params": [ 1.277, -0.211, -0.967, 29.965, 26.318, -9.566 ], "frame": { "rmsd": null, "origin": [ 166.186, 203.570, 115.186 ], "x_axis": [ -0.759, 0.613, -0.218 ], "y_axis": [ 0.357, 0.672, 0.649 ], "z_axis": [ 0.545, 0.414, -0.729 ], "quaternion": [ 0.215, 0.273, 0.889, 0.299 ] } }, { "index": 339, "nt1": "///A/688", "nt2": "///A/692", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -120.802, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 108.042, "chi2": -178.017, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 20.692, "C1C1_dist": 8.931, "N1N9_dist": 8.123, "C6C8_dist": 8.424, "CNNC_torsion": -93.582, "hbonds_num": 1, "hbonds_desc": "N3-N6(amino)[3.59]", "interBase_angle": 60.968, "planarity": 0.873, "simple_Shear": 7.369, "simple_Stretch": 4.070, "simple_Buckle": 44.667, "simple_Propeller": 41.496, "bp_simpleParams": [ 7.369, 4.070, -0.077, 44.667, 41.496, -3.148 ], "bp_params": [ 7.413, -3.989, -0.077, 59.014, -15.311, -2.772 ], "frame": { "rmsd": null, "origin": [ 168.310, 205.401, 113.544 ], "x_axis": [ -0.155, 0.896, 0.417 ], "y_axis": [ 0.889, -0.058, 0.455 ], "z_axis": [ 0.431, 0.441, -0.787 ], "quaternion": [ 0.005, 0.650, 0.686, 0.326 ] } }, { "index": 340, "nt1": "///A/689", "nt2": "///A/2398", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "tHS", "DSSR": "tM+m", "intra_chain": true, "chi1": 12.843, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 8.932, "chi2": -131.870, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 119.590, "C1C1_dist": 10.122, "N1N9_dist": 9.439, "C6C8_dist": 9.910, "CNNC_torsion": 63.133, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[3.70]", "interBase_angle": 24.539, "planarity": 0.321, "simple_Shear": 1.139, "simple_Stretch": 6.284, "simple_Buckle": -23.817, "simple_Propeller": 5.906, "bp_simpleParams": [ 1.139, 6.284, -0.093, -23.817, 5.906, 45.453 ], "bp_params": [ -5.644, 2.989, -0.093, -12.777, -20.950, 45.892 ], "frame": { "rmsd": null, "origin": [ 176.679, 202.460, 106.930 ], "x_axis": [ -0.182, -0.947, -0.266 ], "y_axis": [ -0.788, 0.302, -0.537 ], "z_axis": [ 0.589, 0.112, -0.801 ], "quaternion": [ 0.283, -0.574, 0.756, -0.141 ] } }, { "index": 341, "nt1": "///A/690", "nt2": "///A/2378", "bp": "A+G", "name": "--", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": 171.219, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 7.020, "chi2": -176.482, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 111.443, "C1C1_dist": 9.018, "N1N9_dist": 8.224, "C6C8_dist": 9.118, "CNNC_torsion": -147.522, "hbonds_num": 3, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.25],N6(amino)-N3[2.87],N1-N2(amino)[2.90]", "interBase_angle": 11.196, "planarity": 0.445, "simple_Shear": 2.343, "simple_Stretch": 3.530, "simple_Buckle": -7.755, "simple_Propeller": -8.075, "bp_simpleParams": [ 2.343, 3.530, -1.983, -7.755, -8.075, 74.079 ], "bp_params": [ -2.325, 3.542, -1.983, 4.377, -10.305, 74.262 ], "frame": { "rmsd": null, "origin": [ 172.709, 199.685, 107.424 ], "x_axis": [ 0.824, -0.539, 0.174 ], "y_axis": [ 0.394, 0.767, 0.507 ], "z_axis": [ -0.407, -0.349, 0.844 ], "quaternion": [ 0.927, 0.231, -0.157, -0.252 ] } }, { "index": 342, "nt1": "///A/692", "nt2": "///A/2378", "bp": "A+G", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -178.017, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.961, "chi2": -176.482, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 77.559, "C1C1_dist": 8.417, "N1N9_dist": 7.898, "C6C8_dist": 10.039, "CNNC_torsion": 144.190, "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[2.42]", "interBase_angle": 39.533, "planarity": 0.740, "simple_Shear": 6.131, "simple_Stretch": 2.911, "simple_Buckle": -24.330, "simple_Propeller": -31.159, "bp_simpleParams": [ 6.131, 2.911, 2.667, -24.330, -31.159, 156.569 ], "bp_params": [ 2.063, 6.466, 2.667, 6.327, -39.024, 157.843 ], "frame": { "rmsd": null, "origin": [ 171.619, 199.669, 110.220 ], "x_axis": [ 0.755, 0.003, 0.655 ], "y_axis": [ -0.292, 0.897, 0.332 ], "z_axis": [ -0.587, -0.442, 0.679 ], "quaternion": [ 0.913, 0.212, -0.340, 0.081 ] } }, { "index": 343, "nt1": "///A/718", "nt2": "///A/856", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -133.919, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 52.328, "chi2": 177.828, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.913, "C1C1_dist": 10.746, "N1N9_dist": 8.926, "C6C8_dist": 9.811, "CNNC_torsion": 14.767, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.80],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 15.091, "planarity": 0.209, "simple_Shear": 0.088, "simple_Stretch": -0.154, "simple_Buckle": 11.347, "simple_Propeller": 9.949, "bp_simpleParams": [ 0.088, -0.154, -0.503, 11.347, 9.949, -1.451 ], "bp_params": [ 0.086, -0.155, -0.503, 11.435, 9.848, -1.449 ], "frame": { "rmsd": null, "origin": [ 159.742, 180.739, 170.030 ], "x_axis": [ 0.649, -0.278, -0.708 ], "y_axis": [ -0.203, 0.834, -0.513 ], "z_axis": [ 0.733, 0.477, 0.485 ], "quaternion": [ 0.861, -0.287, 0.418, -0.022 ] } }, { "index": 344, "nt1": "///A/719", "nt2": "///A/855", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.528, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.478, "chi2": -172.941, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.181, "C1C1_dist": 10.836, "N1N9_dist": 8.936, "C6C8_dist": 9.800, "CNNC_torsion": 1.112, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.88]", "interBase_angle": 9.251, "planarity": 0.143, "simple_Shear": 0.086, "simple_Stretch": -0.173, "simple_Buckle": 5.731, "simple_Propeller": 7.262, "bp_simpleParams": [ 0.086, -0.173, 0.097, 5.731, 7.262, -1.434 ], "bp_params": [ 0.085, -0.173, 0.097, 5.768, 7.233, -1.435 ], "frame": { "rmsd": null, "origin": [ 162.727, 180.912, 172.567 ], "x_axis": [ 0.316, 0.187, -0.930 ], "y_axis": [ -0.592, 0.805, -0.040 ], "z_axis": [ 0.742, 0.563, 0.365 ], "quaternion": [ 0.789, -0.191, 0.530, 0.247 ] } }, { "index": 345, "nt1": "///A/720", "nt2": "///A/854", "bp": "C-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -146.888, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.415, "chi2": 171.111, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 28.179, "C1C1_dist": 11.452, "N1N9_dist": 9.237, "C6C8_dist": 9.654, "CNNC_torsion": 7.382, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O4(carbonyl)[3.45]", "interBase_angle": 18.533, "planarity": 0.236, "simple_Shear": 1.885, "simple_Stretch": 0.109, "simple_Buckle": 16.630, "simple_Propeller": 8.181, "bp_simpleParams": [ 1.885, 0.109, -0.716, 16.630, 8.181, -28.062 ], "bp_params": [ 1.869, -0.266, -0.716, 17.930, 4.689, -27.755 ], "frame": { "rmsd": null, "origin": [ 165.747, 180.821, 174.405 ], "x_axis": [ -0.183, 0.655, -0.733 ], "y_axis": [ -0.519, 0.569, 0.638 ], "z_axis": [ 0.835, 0.497, 0.235 ], "quaternion": [ 0.637, 0.055, 0.616, 0.461 ] } }, { "index": 346, "nt1": "///A/721", "nt2": "///A/853", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -147.506, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.708, "chi2": -145.375, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 65.114, "C1C1_dist": 10.343, "N1N9_dist": 8.936, "C6C8_dist": 10.121, "CNNC_torsion": -4.562, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.68],N1(imino)-N3[3.30],N2(amino)-O2(carbonyl)[3.02]", "interBase_angle": 17.827, "planarity": 0.381, "simple_Shear": -0.739, "simple_Stretch": 0.193, "simple_Buckle": 9.304, "simple_Propeller": -15.207, "bp_simpleParams": [ -0.739, 0.193, -0.834, 9.304, -15.207, 13.945 ], "bp_params": [ -0.751, 0.138, -0.834, 10.392, -14.485, 13.999 ], "frame": { "rmsd": null, "origin": [ 169.437, 183.581, 172.116 ], "x_axis": [ -0.413, 0.611, -0.675 ], "y_axis": [ -0.374, 0.562, 0.738 ], "z_axis": [ 0.830, 0.557, -0.004 ], "quaternion": [ 0.535, 0.084, 0.703, 0.460 ] } }, { "index": 347, "nt1": "///A/722", "nt2": "///A/850", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -159.446, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 20.489, "chi2": -164.829, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 28.285, "C1C1_dist": 9.886, "N1N9_dist": 7.309, "C6C8_dist": 6.274, "CNNC_torsion": -177.853, "hbonds_num": 2, "hbonds_desc": "N7-N3(imino)[2.90],N6(amino)-O2(carbonyl)[3.01]", "interBase_angle": 6.494, "planarity": 0.069, "simple_Shear": -4.115, "simple_Stretch": 1.433, "simple_Buckle": -4.385, "simple_Propeller": -4.790, "bp_simpleParams": [ -4.115, 1.433, -0.402, -4.385, -4.790, -100.438 ], "bp_params": [ -4.039, -1.634, -0.402, -0.141, -6.492, -100.528 ], "frame": { "rmsd": null, "origin": [ 177.435, 189.005, 174.539 ], "x_axis": [ -0.873, 0.469, 0.136 ], "y_axis": [ -0.144, -0.513, 0.846 ], "z_axis": [ 0.467, 0.719, 0.515 ], "quaternion": [ 0.180, 0.177, 0.460, 0.851 ] } }, { "index": 348, "nt1": "///A/722", "nt2": "///A/2472", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -159.446, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 98.460, "chi2": -163.427, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 157.220, "C1C1_dist": 5.518, "N1N9_dist": 7.162, "C6C8_dist": 9.672, "CNNC_torsion": -14.025, "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[3.09]", "interBase_angle": 23.119, "planarity": 0.242, "simple_Shear": -0.842, "simple_Stretch": 7.245, "simple_Buckle": 13.111, "simple_Propeller": -19.042, "bp_simpleParams": [ -0.842, 7.245, 1.211, 13.111, -19.042, 149.825 ], "bp_params": [ -2.761, 6.751, 1.211, 17.717, -14.853, 149.717 ], "frame": { "rmsd": null, "origin": [ 181.983, 185.875, 173.511 ], "x_axis": [ 0.539, 0.030, -0.842 ], "y_axis": [ -0.686, 0.596, -0.418 ], "z_axis": [ 0.489, 0.802, 0.342 ], "quaternion": [ 0.787, -0.388, 0.423, 0.227 ] } }, { "index": 349, "nt1": "///A/723", "nt2": "///A/849", "bp": "A-A", "name": "--", "Saenger": "05-V", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -148.195, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 14.038, "chi2": -174.814, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 19.650, "C1C1_dist": 12.910, "N1N9_dist": 10.135, "C6C8_dist": 8.727, "CNNC_torsion": 167.860, "hbonds_num": 2, "hbonds_desc": "N7-N6(amino)[3.47],N6(amino)-N1[2.80]", "interBase_angle": 16.806, "planarity": 0.197, "simple_Shear": -2.511, "simple_Stretch": 3.213, "simple_Buckle": -2.448, "simple_Propeller": -16.627, "bp_simpleParams": [ -2.511, 3.213, -0.158, -2.448, -16.627, -102.939 ], "bp_params": [ -3.627, 1.864, -0.158, 4.763, -16.117, -103.444 ], "frame": { "rmsd": null, "origin": [ 178.318, 192.325, 174.975 ], "x_axis": [ -0.675, 0.034, 0.737 ], "y_axis": [ 0.513, -0.697, 0.501 ], "z_axis": [ 0.531, 0.716, 0.453 ], "quaternion": [ -0.142, 0.377, 0.362, 0.840 ] } }, { "index": 350, "nt1": "///A/723", "nt2": "///A/2098", "bp": "A+G", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -148.195, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 71.122, "chi2": -177.892, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 82.597, "C1C1_dist": 8.647, "N1N9_dist": 8.470, "C6C8_dist": 10.886, "CNNC_torsion": 167.827, "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.44]", "interBase_angle": 23.889, "planarity": 0.351, "simple_Shear": 7.339, "simple_Stretch": 4.771, "simple_Buckle": -17.737, "simple_Propeller": -16.003, "bp_simpleParams": [ 7.339, 4.771, 0.337, -17.737, -16.003, 165.154 ], "bp_params": [ 2.598, 8.359, 0.337, -3.440, -23.640, 165.459 ], "frame": { "rmsd": null, "origin": [ 183.261, 188.681, 174.433 ], "x_axis": [ -0.092, 0.224, -0.970 ], "y_axis": [ -0.782, 0.587, 0.210 ], "z_axis": [ 0.617, 0.778, 0.121 ], "quaternion": [ 0.636, -0.223, 0.624, 0.396 ] } }, { "index": 351, "nt1": "///A/724", "nt2": "///A/847", "bp": "A+A", "name": "--", "Saenger": "01-I", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": 165.836, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 16.671, "chi2": -133.242, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 32.481, "C1C1_dist": 14.024, "N1N9_dist": 11.444, "C6C8_dist": 11.429, "CNNC_torsion": 155.016, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N1[3.00]", "interBase_angle": 14.064, "planarity": 0.209, "simple_Shear": -1.847, "simple_Stretch": 1.884, "simple_Buckle": -5.418, "simple_Propeller": -12.979, "bp_simpleParams": [ -1.847, 1.884, -0.623, -5.418, -12.979, 167.790 ], "bp_params": [ -1.511, -2.164, -0.623, 13.760, -2.908, 167.706 ], "frame": { "rmsd": null, "origin": [ 176.013, 197.166, 178.297 ], "x_axis": [ -0.642, 0.700, -0.311 ], "y_axis": [ -0.722, -0.418, 0.551 ], "z_axis": [ 0.256, 0.579, 0.774 ], "quaternion": [ 0.423, -0.016, 0.335, 0.842 ] } }, { "index": 352, "nt1": "///A/725", "nt2": "///A/846", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.716, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.443, "chi2": -145.072, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.671, "C1C1_dist": 10.558, "N1N9_dist": 8.891, "C6C8_dist": 9.879, "CNNC_torsion": -2.818, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.97]", "interBase_angle": 8.773, "planarity": 0.173, "simple_Shear": 0.192, "simple_Stretch": -0.124, "simple_Buckle": -7.055, "simple_Propeller": -5.214, "bp_simpleParams": [ 0.192, -0.124, -0.271, -7.055, -5.214, 2.432 ], "bp_params": [ 0.190, -0.127, -0.271, -7.142, -5.095, 2.429 ], "frame": { "rmsd": null, "origin": [ 176.394, 200.431, 180.145 ], "x_axis": [ -0.268, -0.737, 0.621 ], "y_axis": [ 0.910, -0.405, -0.087 ], "z_axis": [ 0.315, 0.542, 0.779 ], "quaternion": [ 0.526, -0.299, -0.145, -0.783 ] } }, { "index": 353, "nt1": "///A/726", "nt2": "///A/845", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.249, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.086, "chi2": -175.289, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.786, "C1C1_dist": 10.734, "N1N9_dist": 8.916, "C6C8_dist": 9.825, "CNNC_torsion": -2.368, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 4.159, "planarity": 0.118, "simple_Shear": 0.204, "simple_Stretch": -0.180, "simple_Buckle": -2.318, "simple_Propeller": -3.454, "bp_simpleParams": [ 0.204, -0.180, -0.363, -2.318, -3.454, 0.040 ], "bp_params": [ 0.201, -0.183, -0.363, -2.371, -3.417, 0.040 ], "frame": { "rmsd": null, "origin": [ 176.548, 202.815, 183.122 ], "x_axis": [ 0.264, -0.876, 0.403 ], "y_axis": [ 0.870, 0.036, -0.492 ], "z_axis": [ 0.417, 0.480, 0.772 ], "quaternion": [ 0.720, -0.338, 0.005, -0.606 ] } }, { "index": 354, "nt1": "///A/727", "nt2": "///A/844", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.481, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.797, "chi2": -161.640, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.581, "C1C1_dist": 11.082, "N1N9_dist": 9.278, "C6C8_dist": 10.099, "CNNC_torsion": -5.157, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.15],N1-N3(imino)[3.31]", "interBase_angle": 6.244, "planarity": 0.183, "simple_Shear": -0.161, "simple_Stretch": 0.169, "simple_Buckle": -4.648, "simple_Propeller": 4.170, "bp_simpleParams": [ -0.161, 0.169, 0.693, -4.648, 4.170, -5.062 ], "bp_params": [ -0.164, 0.166, 0.693, -4.703, 4.108, -5.061 ], "frame": { "rmsd": null, "origin": [ 176.495, 204.392, 186.373 ], "x_axis": [ 0.572, -0.820, -0.008 ], "y_axis": [ 0.570, 0.404, -0.715 ], "z_axis": [ 0.590, 0.404, 0.699 ], "quaternion": [ 0.818, -0.342, 0.183, -0.425 ] } }, { "index": 355, "nt1": "///A/728", "nt2": "///A/843", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.149, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.497, "chi2": -179.372, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.668, "C1C1_dist": 10.753, "N1N9_dist": 8.921, "C6C8_dist": 9.819, "CNNC_torsion": -8.676, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.81]", "interBase_angle": 2.328, "planarity": 0.175, "simple_Shear": -0.132, "simple_Stretch": -0.219, "simple_Buckle": 0.390, "simple_Propeller": 2.295, "bp_simpleParams": [ -0.132, -0.219, 0.765, 0.390, 2.295, -0.676 ], "bp_params": [ -0.130, -0.221, 0.765, 0.370, 2.299, -0.676 ], "frame": { "rmsd": null, "origin": [ 178.088, 204.485, 189.451 ], "x_axis": [ 0.754, -0.464, -0.464 ], "y_axis": [ 0.135, 0.801, -0.582 ], "z_axis": [ 0.642, 0.377, 0.668 ], "quaternion": [ 0.898, -0.267, 0.308, -0.167 ] } }, { "index": 356, "nt1": "///A/729", "nt2": "///A/842", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 175.071, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.126, "chi2": -165.776, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.979, "C1C1_dist": 10.698, "N1N9_dist": 8.890, "C6C8_dist": 9.792, "CNNC_torsion": -16.402, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 9.804, "planarity": 0.197, "simple_Shear": -0.171, "simple_Stretch": -0.233, "simple_Buckle": -3.514, "simple_Propeller": -9.153, "bp_simpleParams": [ -0.171, -0.233, 0.624, -3.514, -9.153, -1.441 ], "bp_params": [ -0.169, -0.235, 0.624, -3.402, -9.195, -1.445 ], "frame": { "rmsd": null, "origin": [ 180.752, 203.539, 192.043 ], "x_axis": [ 0.619, -0.019, -0.785 ], "y_axis": [ -0.239, 0.948, -0.211 ], "z_axis": [ 0.748, 0.318, 0.582 ], "quaternion": [ 0.887, -0.149, 0.432, 0.062 ] } }, { "index": 357, "nt1": "///A/730", "nt2": "///A/841", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.170, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.378, "chi2": -172.171, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.594, "C1C1_dist": 10.857, "N1N9_dist": 8.984, "C6C8_dist": 9.799, "CNNC_torsion": -13.009, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.90],O4(carbonyl)-N6(amino)[2.88]", "interBase_angle": 11.747, "planarity": 0.152, "simple_Shear": -0.153, "simple_Stretch": -0.091, "simple_Buckle": -8.994, "simple_Propeller": -7.557, "bp_simpleParams": [ -0.153, -0.091, 0.385, -8.994, -7.557, -5.119 ], "bp_params": [ -0.152, -0.094, 0.385, -8.863, -7.710, -5.116 ], "frame": { "rmsd": null, "origin": [ 183.453, 202.769, 194.656 ], "x_axis": [ 0.325, 0.606, -0.726 ], "y_axis": [ -0.579, 0.735, 0.354 ], "z_axis": [ 0.748, 0.305, 0.589 ], "quaternion": [ 0.814, 0.015, 0.453, 0.364 ] } }, { "index": 358, "nt1": "///A/731", "nt2": "///A/822", "bp": "G-G", "name": "--", "Saenger": "07-VII", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -174.773, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 25.964, "chi2": -134.918, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 37.932, "C1C1_dist": 11.180, "N1N9_dist": 8.833, "C6C8_dist": 7.553, "CNNC_torsion": 153.255, "hbonds_num": 2, "hbonds_desc": "N1(imino)-N7[3.08],N2(amino)-O6(carbonyl)[3.26]", "interBase_angle": 22.843, "planarity": 0.316, "simple_Shear": 3.721, "simple_Stretch": 4.252, "simple_Buckle": -22.737, "simple_Propeller": -2.195, "bp_simpleParams": [ 3.721, 4.252, 0.579, -22.737, -2.195, -118.670 ], "bp_params": [ 5.649, 0.086, 0.579, -16.844, 15.430, -118.577 ], "frame": { "rmsd": null, "origin": [ 188.014, 200.064, 195.257 ], "x_axis": [ -0.398, 0.868, 0.296 ], "y_axis": [ -0.376, -0.449, 0.811 ], "z_axis": [ 0.837, 0.212, 0.505 ], "quaternion": [ 0.406, 0.369, 0.333, 0.767 ] } }, { "index": 359, "nt1": "///A/732", "nt2": "///A/735", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": 80.260, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 69.471, "chi2": -163.548, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 16.275, "C1C1_dist": 8.020, "N1N9_dist": 6.345, "C6C8_dist": 5.598, "CNNC_torsion": 171.580, "hbonds_num": 0, "hbonds_desc": "", "interBase_angle": 13.793, "planarity": 0.196, "simple_Shear": -1.885, "simple_Stretch": 4.975, "simple_Buckle": 5.783, "simple_Propeller": -12.523, "bp_simpleParams": [ -1.885, 4.975, -0.483, 5.783, -12.523, -157.069 ], "bp_params": [ -5.261, -0.791, -0.483, 13.465, 2.990, -156.921 ], "frame": { "rmsd": null, "origin": [ 191.980, 201.784, 201.560 ], "x_axis": [ -0.011, -0.662, 0.750 ], "y_axis": [ -0.563, 0.623, 0.542 ], "z_axis": [ -0.826, -0.416, -0.379 ], "quaternion": [ 0.555, 0.432, -0.709, -0.044 ] } }, { "index": 360, "nt1": "///A/732", "nt2": "///A/825", "bp": "A-G", "name": "--", "Saenger": "--", "LW": ".WS", "DSSR": ".W-m", "intra_chain": true, "chi1": 80.260, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 23.348, "chi2": -167.854, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 111.826, "C1C1_dist": 10.465, "N1N9_dist": 9.705, "C6C8_dist": 10.727, "CNNC_torsion": 36.935, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[3.59]", "interBase_angle": 38.037, "planarity": 0.501, "simple_Shear": -6.071, "simple_Stretch": 3.845, "simple_Buckle": 16.202, "simple_Propeller": 34.413, "bp_simpleParams": [ -6.071, 3.845, 0.336, 16.202, 34.413, 40.894 ], "bp_params": [ -7.074, -1.267, 0.336, -11.642, 36.211, 42.649 ], "frame": { "rmsd": null, "origin": [ 193.941, 200.905, 197.335 ], "x_axis": [ 0.377, -0.573, -0.728 ], "y_axis": [ 0.035, -0.776, 0.629 ], "z_axis": [ -0.926, -0.263, -0.272 ], "quaternion": [ 0.286, 0.779, -0.173, -0.531 ] } }, { "index": 361, "nt1": "///A/734", "nt2": "///A/1809", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -175.612, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 110.238, "chi2": -132.078, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 36.378, "C1C1_dist": 10.211, "N1N9_dist": 9.571, "C6C8_dist": 10.913, "CNNC_torsion": -31.276, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.52],O2(carbonyl)-N6(amino)[3.25]", "interBase_angle": 25.296, "planarity": 0.320, "simple_Shear": 5.381, "simple_Stretch": 3.428, "simple_Buckle": 8.718, "simple_Propeller": -23.746, "bp_simpleParams": [ 5.381, 3.428, 0.688, 8.718, -23.746, 42.819 ], "bp_params": [ 6.372, -0.328, 0.688, -6.768, -24.374, 43.647 ], "frame": { "rmsd": null, "origin": [ 190.286, 193.771, 204.050 ], "x_axis": [ -0.289, 0.812, -0.507 ], "y_axis": [ -0.384, 0.386, 0.839 ], "z_axis": [ 0.877, 0.437, 0.200 ], "quaternion": [ 0.570, 0.176, 0.607, 0.525 ] } }, { "index": 362, "nt1": "///A/736", "nt2": "///A/820", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.519, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.663, "chi2": -152.043, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.703, "C1C1_dist": 10.820, "N1N9_dist": 8.993, "C6C8_dist": 9.835, "CNNC_torsion": -9.445, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.93],N1-N3(imino)[2.94]", "interBase_angle": 5.215, "planarity": 0.163, "simple_Shear": 0.044, "simple_Stretch": -0.102, "simple_Buckle": -4.761, "simple_Propeller": -2.128, "bp_simpleParams": [ 0.044, -0.102, 0.543, -4.761, -2.128, -4.041 ], "bp_params": [ 0.043, -0.103, 0.543, -4.781, -2.082, -4.038 ], "frame": { "rmsd": null, "origin": [ 195.070, 203.043, 203.522 ], "x_axis": [ -0.780, -0.078, 0.621 ], "y_axis": [ 0.212, -0.966, 0.145 ], "z_axis": [ 0.589, 0.245, 0.770 ], "quaternion": [ -0.077, 0.323, 0.104, 0.938 ] } }, { "index": 363, "nt1": "///A/737", "nt2": "///A/819", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.155, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.229, "chi2": -157.027, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.567, "C1C1_dist": 10.587, "N1N9_dist": 8.893, "C6C8_dist": 9.861, "CNNC_torsion": -0.844, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 4.555, "planarity": 0.118, "simple_Shear": 0.205, "simple_Stretch": -0.155, "simple_Buckle": 0.945, "simple_Propeller": 4.456, "bp_simpleParams": [ 0.205, -0.155, 0.385, 0.945, 4.456, 1.884 ], "bp_params": [ 0.202, -0.159, 0.385, 1.018, 4.440, 1.885 ], "frame": { "rmsd": null, "origin": [ 196.589, 204.925, 206.405 ], "x_axis": [ -0.604, -0.555, 0.572 ], "y_axis": [ 0.545, -0.811, -0.212 ], "z_axis": [ 0.581, 0.184, 0.793 ], "quaternion": [ -0.307, 0.322, -0.008, 0.896 ] } }, { "index": 364, "nt1": "///A/738", "nt2": "///A/818", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.318, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.901, "chi2": 167.492, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.385, "C1C1_dist": 10.664, "N1N9_dist": 8.858, "C6C8_dist": 9.778, "CNNC_torsion": -4.539, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 7.374, "planarity": 0.218, "simple_Shear": 0.252, "simple_Stretch": -0.230, "simple_Buckle": 6.672, "simple_Propeller": 3.139, "bp_simpleParams": [ 0.252, -0.230, 0.611, 6.672, 3.139, 0.663 ], "bp_params": [ 0.247, -0.235, 0.611, 6.736, 2.999, 0.662 ], "frame": { "rmsd": null, "origin": [ 196.890, 206.430, 209.935 ], "x_axis": [ -0.215, -0.914, 0.345 ], "y_axis": [ 0.752, -0.380, -0.538 ], "z_axis": [ 0.623, 0.143, 0.769 ], "quaternion": [ 0.542, -0.315, 0.128, -0.769 ] } }, { "index": 365, "nt1": "///A/739", "nt2": "///A/817", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.823, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.497, "chi2": -161.730, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.795, "C1C1_dist": 10.689, "N1N9_dist": 8.961, "C6C8_dist": 9.905, "CNNC_torsion": -0.710, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 3.614, "planarity": 0.050, "simple_Shear": 0.201, "simple_Stretch": -0.106, "simple_Buckle": 3.603, "simple_Propeller": 0.290, "bp_simpleParams": [ 0.201, -0.106, -0.029, 3.603, 0.290, 0.901 ], "bp_params": [ 0.199, -0.109, -0.029, 3.607, 0.235, 0.900 ], "frame": { "rmsd": null, "origin": [ 196.842, 207.869, 213.799 ], "x_axis": [ 0.131, -0.991, 0.024 ], "y_axis": [ 0.822, 0.095, -0.561 ], "z_axis": [ 0.554, 0.093, 0.827 ], "quaternion": [ 0.716, -0.228, 0.185, -0.633 ] } }, { "index": 366, "nt1": "///A/740", "nt2": "///A/816", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.668, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.196, "chi2": -167.485, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.919, "C1C1_dist": 10.696, "N1N9_dist": 8.946, "C6C8_dist": 9.865, "CNNC_torsion": -4.809, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.99],N1-N3(imino)[2.90]", "interBase_angle": 1.995, "planarity": 0.069, "simple_Shear": 0.046, "simple_Stretch": -0.073, "simple_Buckle": 1.894, "simple_Propeller": -0.628, "bp_simpleParams": [ 0.046, -0.073, 0.359, 1.894, -0.628, -0.788 ], "bp_params": [ 0.045, -0.073, 0.359, 1.888, -0.646, -0.788 ], "frame": { "rmsd": null, "origin": [ 197.356, 207.216, 217.271 ], "x_axis": [ 0.415, -0.746, -0.522 ], "y_axis": [ 0.645, 0.645, -0.409 ], "z_axis": [ 0.641, -0.167, 0.749 ], "quaternion": [ 0.838, -0.072, 0.347, -0.415 ] } }, { "index": 367, "nt1": "///A/741", "nt2": "///A/815", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.179, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.548, "chi2": -173.945, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 41.406, "C1C1_dist": 10.750, "N1N9_dist": 8.995, "C6C8_dist": 9.837, "CNNC_torsion": -6.826, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.01],N3(imino)-O6(carbonyl)[3.00]", "interBase_angle": 1.112, "planarity": 0.088, "simple_Shear": 2.117, "simple_Stretch": 0.061, "simple_Buckle": -0.631, "simple_Propeller": -0.916, "bp_simpleParams": [ 2.117, 0.061, 0.451, -0.631, -0.916, -3.372 ], "bp_params": [ 2.084, -0.380, 0.451, -0.807, -0.765, -3.372 ], "frame": { "rmsd": null, "origin": [ 199.112, 205.057, 220.019 ], "x_axis": [ 0.724, -0.179, -0.666 ], "y_axis": [ 0.276, 0.960, 0.043 ], "z_axis": [ 0.632, -0.215, 0.744 ], "quaternion": [ 0.926, 0.070, 0.351, -0.123 ] } }, { "index": 368, "nt1": "///A/742", "nt2": "///A/814", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.451, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 42.550, "chi2": -163.167, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 64.842, "C1C1_dist": 10.679, "N1N9_dist": 8.973, "C6C8_dist": 9.855, "CNNC_torsion": 3.329, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[3.02],N1(imino)-O2(carbonyl)[3.00]", "interBase_angle": 2.280, "planarity": 0.108, "simple_Shear": -2.074, "simple_Stretch": 0.055, "simple_Buckle": -2.160, "simple_Propeller": -0.731, "bp_simpleParams": [ -2.074, 0.055, -0.579, -2.160, -0.731, -1.791 ], "bp_params": [ -2.042, -0.368, -0.579, -1.967, -1.154, -1.791 ], "frame": { "rmsd": null, "origin": [ 201.023, 201.370, 221.120 ], "x_axis": [ 0.697, 0.086, -0.712 ], "y_axis": [ 0.234, 0.912, 0.338 ], "z_axis": [ 0.678, -0.402, 0.615 ], "quaternion": [ 0.898, 0.206, 0.387, -0.041 ] } }, { "index": 369, "nt1": "///A/743", "nt2": "///A/813", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.075, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 64.388, "chi2": -171.114, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 42.429, "C1C1_dist": 10.672, "N1N9_dist": 8.950, "C6C8_dist": 9.833, "CNNC_torsion": -4.333, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.94],N3(imino)-O6(carbonyl)[2.99]", "interBase_angle": 0.261, "planarity": 0.036, "simple_Shear": 2.052, "simple_Stretch": 0.053, "simple_Buckle": 0.132, "simple_Propeller": -0.226, "bp_simpleParams": [ 2.052, 0.053, 0.156, 0.132, -0.226, -1.392 ], "bp_params": [ 2.020, -0.361, 0.156, 0.094, -0.244, -1.390 ], "frame": { "rmsd": null, "origin": [ 203.537, 199.308, 222.432 ], "x_axis": [ 0.602, 0.748, -0.280 ], "y_axis": [ -0.368, 0.571, 0.734 ], "z_axis": [ 0.709, -0.339, 0.619 ], "quaternion": [ 0.835, 0.321, 0.296, 0.334 ] } }, { "index": 370, "nt1": "///A/744", "nt2": "///A/812", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.075, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.992, "chi2": -173.868, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.454, "C1C1_dist": 10.842, "N1N9_dist": 8.994, "C6C8_dist": 9.870, "CNNC_torsion": 0.992, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.84],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 6.668, "planarity": 0.088, "simple_Shear": 0.156, "simple_Stretch": -0.139, "simple_Buckle": -1.850, "simple_Propeller": 6.406, "bp_simpleParams": [ 0.156, -0.139, 0.219, -1.850, 6.406, -1.398 ], "bp_params": [ 0.154, -0.140, 0.219, -1.782, 6.426, -1.400 ], "frame": { "rmsd": null, "origin": [ 206.652, 197.259, 223.004 ], "x_axis": [ 0.328, 0.939, 0.106 ], "y_axis": [ -0.577, 0.110, 0.809 ], "z_axis": [ 0.748, -0.326, 0.578 ], "quaternion": [ 0.710, 0.400, 0.226, 0.534 ] } }, { "index": 371, "nt1": "///A/745", "nt2": "///A/810", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.235, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.300, "chi2": -94.775, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.999, "C1C1_dist": 10.489, "N1N9_dist": 8.827, "C6C8_dist": 9.795, "CNNC_torsion": -1.643, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 9.397, "planarity": 0.250, "simple_Shear": 0.218, "simple_Stretch": -0.223, "simple_Buckle": 7.157, "simple_Propeller": 6.089, "bp_simpleParams": [ 0.218, -0.223, 0.670, 7.157, 6.089, 2.013 ], "bp_params": [ 0.214, -0.227, 0.670, 7.271, 5.953, 2.012 ], "frame": { "rmsd": null, "origin": [ 209.748, 196.074, 223.782 ], "x_axis": [ 0.020, 0.953, 0.303 ], "y_axis": [ -0.644, -0.219, 0.733 ], "z_axis": [ 0.765, -0.210, 0.609 ], "quaternion": [ 0.594, 0.397, 0.195, 0.672 ] } }, { "index": 372, "nt1": "///A/746", "nt2": "///A/780", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -166.894, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 9.115, "chi2": -162.065, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 90.169, "C1C1_dist": 10.425, "N1N9_dist": 9.066, "C6C8_dist": 9.438, "CNNC_torsion": 84.681, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[3.12],N6(amino)-N3[3.12]", "interBase_angle": 8.174, "planarity": 0.263, "simple_Shear": -7.004, "simple_Stretch": 2.556, "simple_Buckle": -6.682, "simple_Propeller": 4.709, "bp_simpleParams": [ -7.004, 2.556, -1.232, -6.682, 4.709, -10.963 ], "bp_params": [ -6.713, -3.245, -1.232, -8.032, -1.517, -10.938 ], "frame": { "rmsd": null, "origin": [ 210.725, 183.470, 229.246 ], "x_axis": [ 0.310, 0.130, -0.942 ], "y_axis": [ -0.218, 0.974, 0.063 ], "z_axis": [ 0.926, 0.185, 0.330 ], "quaternion": [ 0.808, -0.038, 0.578, 0.108 ] } }, { "index": 373, "nt1": "///A/747", "nt2": "///A/779", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.219, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.979, "chi2": -157.245, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.399, "C1C1_dist": 10.728, "N1N9_dist": 8.962, "C6C8_dist": 9.880, "CNNC_torsion": 8.214, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.81]", "interBase_angle": 9.871, "planarity": 0.134, "simple_Shear": -0.144, "simple_Stretch": -0.129, "simple_Buckle": -6.167, "simple_Propeller": 7.707, "bp_simpleParams": [ -0.144, -0.129, -0.379, -6.167, 7.707, -0.603 ], "bp_params": [ -0.142, -0.130, -0.379, -6.254, 7.636, -0.604 ], "frame": { "rmsd": null, "origin": [ 215.003, 183.683, 229.535 ], "x_axis": [ -0.030, 0.832, -0.553 ], "y_axis": [ -0.417, 0.493, 0.764 ], "z_axis": [ 0.908, 0.254, 0.332 ], "quaternion": [ 0.670, 0.190, 0.546, 0.466 ] } }, { "index": 374, "nt1": "///A/748", "nt2": "///A/778", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.903, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.174, "chi2": -166.362, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.342, "C1C1_dist": 10.580, "N1N9_dist": 8.877, "C6C8_dist": 9.838, "CNNC_torsion": 4.730, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 4.381, "planarity": 0.178, "simple_Shear": -0.107, "simple_Stretch": -0.220, "simple_Buckle": -3.662, "simple_Propeller": -2.405, "bp_simpleParams": [ -0.107, -0.220, -0.882, -3.662, -2.405, 1.391 ], "bp_params": [ -0.106, -0.221, -0.882, -3.648, -2.427, 1.390 ], "frame": { "rmsd": null, "origin": [ 218.520, 184.725, 228.609 ], "x_axis": [ -0.424, 0.894, -0.145 ], "y_axis": [ -0.272, 0.027, 0.962 ], "z_axis": [ 0.864, 0.447, 0.232 ], "quaternion": [ 0.457, 0.282, 0.552, 0.638 ] } }, { "index": 375, "nt1": "///A/749", "nt2": "///A/777", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 170.796, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.550, "chi2": -170.840, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.866, "C1C1_dist": 10.852, "N1N9_dist": 8.963, "C6C8_dist": 9.794, "CNNC_torsion": 11.053, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.94],N2(amino)-O2(carbonyl)[2.85]", "interBase_angle": 18.061, "planarity": 0.236, "simple_Shear": -0.031, "simple_Stretch": -0.152, "simple_Buckle": -17.411, "simple_Propeller": 4.799, "bp_simpleParams": [ -0.031, -0.152, -0.976, -17.411, 4.799, -3.385 ], "bp_params": [ -0.031, -0.152, -0.976, -17.426, 4.746, -3.349 ], "frame": { "rmsd": null, "origin": [ 222.190, 187.154, 227.437 ], "x_axis": [ -0.482, 0.792, 0.375 ], "y_axis": [ -0.008, -0.432, 0.902 ], "z_axis": [ 0.876, 0.431, 0.215 ], "quaternion": [ 0.274, 0.429, 0.457, 0.729 ] } }, { "index": 376, "nt1": "///A/750", "nt2": "///A/775", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.058, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.184, "chi2": -104.140, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 37.389, "C1C1_dist": 10.675, "N1N9_dist": 8.857, "C6C8_dist": 9.515, "CNNC_torsion": 14.861, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.96],N3(imino)-O6(carbonyl)[2.71]", "interBase_angle": 16.116, "planarity": 0.205, "simple_Shear": 2.760, "simple_Stretch": -0.003, "simple_Buckle": -12.889, "simple_Propeller": 9.675, "bp_simpleParams": [ 2.760, -0.003, -0.159, -12.889, 9.675, -10.853 ], "bp_params": [ 2.656, -0.751, -0.159, -9.799, 12.795, -10.882 ], "frame": { "rmsd": null, "origin": [ 224.946, 189.035, 227.227 ], "x_axis": [ -0.491, 0.155, 0.857 ], "y_axis": [ 0.368, -0.855, 0.365 ], "z_axis": [ 0.789, 0.495, 0.363 ], "quaternion": [ -0.065, 0.500, 0.261, 0.823 ] } }, { "index": 377, "nt1": "///A/751", "nt2": "///A/774", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -130.506, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 98.560, "chi2": -120.685, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 5.898, "C1C1_dist": 9.294, "N1N9_dist": 8.164, "C6C8_dist": 8.566, "CNNC_torsion": -142.557, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[3.16],N3-N6(amino)[3.27]", "interBase_angle": 29.141, "planarity": 0.406, "simple_Shear": 7.667, "simple_Stretch": 2.471, "simple_Buckle": -13.921, "simple_Propeller": 25.601, "bp_simpleParams": [ 7.667, 2.471, 0.665, -13.921, 25.601, 0.532 ], "bp_params": [ 6.642, -4.558, 0.665, 11.888, 26.606, 0.544 ], "frame": { "rmsd": null, "origin": [ 227.321, 190.583, 229.151 ], "x_axis": [ -0.177, -0.562, 0.808 ], "y_axis": [ 0.621, -0.701, -0.352 ], "z_axis": [ 0.764, 0.439, 0.473 ], "quaternion": [ -0.386, 0.512, 0.028, 0.767 ] } }, { "index": 378, "nt1": "///A/752", "nt2": "///A/773", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -165.241, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 8.155, "chi2": -100.901, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 96.909, "C1C1_dist": 9.135, "N1N9_dist": 7.972, "C6C8_dist": 8.365, "CNNC_torsion": -120.477, "hbonds_num": 3, "hbonds_desc": "OP2-N2(amino)[3.30],N7-N2(amino)[2.85],N6(amino)-N3[3.11]", "interBase_angle": 18.767, "planarity": 0.283, "simple_Shear": -7.733, "simple_Stretch": 2.512, "simple_Buckle": -12.278, "simple_Propeller": 14.194, "bp_simpleParams": [ -7.733, 2.512, 0.102, -12.278, 14.194, -4.405 ], "bp_params": [ -6.670, -4.650, 0.102, -18.728, -1.211, -4.347 ], "frame": { "rmsd": null, "origin": [ 229.979, 194.085, 230.591 ], "x_axis": [ -0.146, -0.369, 0.918 ], "y_axis": [ 0.648, -0.737, -0.193 ], "z_axis": [ 0.747, 0.567, 0.346 ], "quaternion": [ -0.341, 0.558, 0.125, 0.746 ] } }, { "index": 379, "nt1": "///A/753", "nt2": "///A/772", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -174.509, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 11.135, "chi2": -150.803, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 103.465, "C1C1_dist": 9.366, "N1N9_dist": 8.346, "C6C8_dist": 8.919, "CNNC_torsion": -10.433, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[3.08],N6(amino)-O2'(hydroxyl)[2.81],N6(amino)-N3[2.85]", "interBase_angle": 6.706, "planarity": 0.092, "simple_Shear": -7.426, "simple_Stretch": 2.495, "simple_Buckle": -2.966, "simple_Propeller": 6.015, "bp_simpleParams": [ -7.426, 2.495, -0.105, -2.966, 6.015, 4.376 ], "bp_params": [ -6.745, -3.984, -0.105, -6.489, 1.693, 4.369 ], "frame": { "rmsd": null, "origin": [ 233.429, 195.443, 231.680 ], "x_axis": [ 0.095, -0.776, 0.624 ], "y_axis": [ 0.416, -0.539, -0.732 ], "z_axis": [ 0.904, 0.329, 0.272 ], "quaternion": [ -0.455, 0.583, -0.154, 0.655 ] } }, { "index": 380, "nt1": "///A/754", "nt2": "///A/771", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.648, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.258, "chi2": 179.962, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.061, "C1C1_dist": 10.251, "N1N9_dist": 8.549, "C6C8_dist": 9.525, "CNNC_torsion": 0.431, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.98],N1(imino)-O2(carbonyl)[2.82],N2(amino)-O2(carbonyl)[2.54]", "interBase_angle": 4.476, "planarity": 0.055, "simple_Shear": -0.998, "simple_Stretch": -0.427, "simple_Buckle": 0.397, "simple_Propeller": 4.459, "bp_simpleParams": [ -0.998, -0.427, 0.031, 0.397, 4.459, 1.215 ], "bp_params": [ -0.953, -0.520, 0.031, -0.031, 4.476, 1.215 ], "frame": { "rmsd": null, "origin": [ 236.114, 196.151, 233.026 ], "x_axis": [ 0.306, -0.885, -0.352 ], "y_axis": [ 0.088, 0.395, -0.915 ], "z_axis": [ 0.948, 0.248, 0.199 ], "quaternion": [ 0.689, -0.422, 0.472, -0.353 ] } }, { "index": 381, "nt1": "///A/755", "nt2": "///A/770", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.545, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.119, "chi2": -171.411, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.556, "C1C1_dist": 10.322, "N1N9_dist": 8.710, "C6C8_dist": 9.746, "CNNC_torsion": 2.395, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.74],O4(carbonyl)-N6(amino)[2.97]", "interBase_angle": 3.615, "planarity": 0.044, "simple_Shear": 0.013, "simple_Stretch": -0.184, "simple_Buckle": 3.056, "simple_Propeller": 1.931, "bp_simpleParams": [ 0.013, -0.184, -0.058, 3.056, 1.931, 3.801 ], "bp_params": [ 0.013, -0.184, -0.058, 3.049, 1.942, 3.800 ], "frame": { "rmsd": null, "origin": [ 239.151, 195.614, 234.853 ], "x_axis": [ 0.258, -0.489, -0.833 ], "y_axis": [ -0.089, 0.847, -0.524 ], "z_axis": [ 0.962, 0.210, 0.175 ], "quaternion": [ 0.755, -0.243, 0.595, -0.132 ] } }, { "index": 382, "nt1": "///A/756", "nt2": "///A/769", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.953, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.668, "chi2": -166.760, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.573, "C1C1_dist": 10.495, "N1N9_dist": 8.789, "C6C8_dist": 9.767, "CNNC_torsion": 0.152, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.79],O4(carbonyl)-N6(amino)[2.95]", "interBase_angle": 1.512, "planarity": 0.076, "simple_Shear": -0.008, "simple_Stretch": -0.174, "simple_Buckle": -0.914, "simple_Propeller": -1.205, "bp_simpleParams": [ -0.008, -0.174, -0.322, -0.914, -1.205, 1.483 ], "bp_params": [ -0.007, -0.174, -0.322, -0.907, -1.210, 1.483 ], "frame": { "rmsd": null, "origin": [ 242.353, 194.468, 235.479 ], "x_axis": [ -0.020, 0.006, -1.000 ], "y_axis": [ -0.078, 0.997, 0.008 ], "z_axis": [ 0.997, 0.079, -0.019 ], "quaternion": [ 0.700, -0.025, 0.713, 0.030 ] } }, { "index": 383, "nt1": "///A/757", "nt2": "///A/768", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.610, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.648, "chi2": -166.460, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.846, "C1C1_dist": 10.577, "N1N9_dist": 8.895, "C6C8_dist": 9.856, "CNNC_torsion": 0.906, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 3.555, "planarity": 0.044, "simple_Shear": 0.187, "simple_Stretch": -0.165, "simple_Buckle": 3.453, "simple_Propeller": -0.846, "bp_simpleParams": [ 0.187, -0.165, -0.213, 3.453, -0.846, 0.972 ], "bp_params": [ 0.185, -0.168, -0.213, 3.441, -0.894, 0.971 ], "frame": { "rmsd": null, "origin": [ 245.369, 193.423, 234.798 ], "x_axis": [ -0.123, 0.541, -0.832 ], "y_axis": [ -0.029, 0.836, 0.548 ], "z_axis": [ 0.992, 0.092, -0.087 ], "quaternion": [ 0.638, 0.179, 0.715, 0.224 ] } }, { "index": 384, "nt1": "///A/758", "nt2": "///A/767", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 168.518, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.208, "chi2": -166.763, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.930, "C1C1_dist": 10.296, "N1N9_dist": 8.653, "C6C8_dist": 9.706, "CNNC_torsion": 8.540, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.00],N1-N3(imino)[2.70]", "interBase_angle": 9.774, "planarity": 0.122, "simple_Shear": -0.030, "simple_Stretch": -0.219, "simple_Buckle": 1.965, "simple_Propeller": 9.575, "bp_simpleParams": [ -0.030, -0.219, -0.082, 1.965, 9.575, 4.779 ], "bp_params": [ -0.031, -0.219, -0.082, 1.994, 9.569, 4.795 ], "frame": { "rmsd": null, "origin": [ 248.343, 192.958, 233.228 ], "x_axis": [ -0.330, 0.860, -0.390 ], "y_axis": [ 0.027, 0.422, 0.906 ], "z_axis": [ 0.944, 0.288, -0.163 ], "quaternion": [ 0.482, 0.320, 0.692, 0.432 ] } }, { "index": 385, "nt1": "///A/759", "nt2": "///A/766", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 175.636, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.206, "chi2": -154.880, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 74.587, "C1C1_dist": 9.943, "N1N9_dist": 8.778, "C6C8_dist": 10.237, "CNNC_torsion": 14.151, "hbonds_num": 2, "hbonds_desc": "N1(imino)-O2(carbonyl)[3.13],N2(amino)-O2(carbonyl)[2.30]", "interBase_angle": 11.821, "planarity": 0.248, "simple_Shear": -1.396, "simple_Stretch": 0.544, "simple_Buckle": -5.575, "simple_Propeller": 10.423, "bp_simpleParams": [ -1.396, 0.544, -1.376, -5.575, 10.423, 26.439 ], "bp_params": [ -1.458, 0.345, -1.376, -6.960, 9.554, 26.481 ], "frame": { "rmsd": null, "origin": [ 250.723, 194.784, 230.258 ], "x_axis": [ -0.441, 0.896, 0.038 ], "y_axis": [ 0.248, 0.081, 0.965 ], "z_axis": [ 0.862, 0.436, -0.258 ], "quaternion": [ 0.309, 0.429, 0.667, 0.525 ] } }, { "index": 386, "nt1": "///A/760", "nt2": "///A/765", "bp": "G+A", "name": "--", "Saenger": "10-X", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -153.883, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 105.684, "chi2": -29.060, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 4.485, "C1C1_dist": 9.486, "N1N9_dist": 8.543, "C6C8_dist": 9.442, "CNNC_torsion": 157.066, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[2.97],N2(amino)-N1[2.80],N3-N6(amino)[2.80]", "interBase_angle": 17.679, "planarity": 0.395, "simple_Shear": 2.186, "simple_Stretch": 3.821, "simple_Buckle": -3.893, "simple_Propeller": 17.245, "bp_simpleParams": [ 2.186, 3.821, -2.070, -3.893, 17.245, -75.829 ], "bp_params": [ 2.759, -3.430, -2.070, 17.472, -2.699, -75.198 ], "frame": { "rmsd": null, "origin": [ 252.741, 197.048, 230.126 ], "x_axis": [ 0.456, -0.360, 0.814 ], "y_axis": [ 0.290, -0.804, -0.518 ], "z_axis": [ 0.841, 0.473, -0.263 ], "quaternion": [ -0.312, 0.794, -0.022, 0.521 ] } }, { "index": 387, "nt1": "///A/760", "nt2": "///A/766", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -153.883, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 117.063, "chi2": -154.880, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 72.992, "C1C1_dist": 6.552, "N1N9_dist": 6.807, "C6C8_dist": 9.059, "CNNC_torsion": 19.637, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N3[3.01]", "interBase_angle": 16.702, "planarity": 0.418, "simple_Shear": 1.886, "simple_Stretch": 2.339, "simple_Buckle": -1.461, "simple_Propeller": 16.638, "bp_simpleParams": [ 1.886, 2.339, 1.058, -1.461, 16.638, 94.543 ], "bp_params": [ 2.498, 1.670, 1.058, 3.579, 16.314, 95.096 ], "frame": { "rmsd": null, "origin": [ 251.477, 196.583, 231.175 ], "x_axis": [ -0.257, 0.768, 0.587 ], "y_axis": [ 0.483, -0.424, 0.766 ], "z_axis": [ 0.837, 0.481, -0.262 ], "quaternion": [ 0.119, 0.598, 0.523, 0.596 ] } }, { "index": 388, "nt1": "///A/761", "nt2": "///A/765", "bp": "U+A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm+W", "intra_chain": true, "chi1": -123.906, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 140.667, "chi2": -29.060, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 30.076, "C1C1_dist": 7.418, "N1N9_dist": 7.318, "C6C8_dist": 8.087, "CNNC_torsion": -46.064, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)*N1[3.01]", "interBase_angle": 43.918, "planarity": 0.697, "simple_Shear": 1.745, "simple_Stretch": 5.184, "simple_Buckle": -13.127, "simple_Propeller": 41.911, "bp_simpleParams": [ 1.745, 5.184, 0.666, -13.127, 41.911, -32.455 ], "bp_params": [ 2.734, -4.738, 0.666, 39.898, -18.357, -31.022 ], "frame": { "rmsd": null, "origin": [ 253.902, 197.227, 230.504 ], "x_axis": [ 0.597, -0.588, 0.546 ], "y_axis": [ 0.272, -0.491, -0.827 ], "z_axis": [ 0.755, 0.642, -0.133 ], "quaternion": [ -0.493, 0.745, -0.106, 0.436 ] } }, { "index": 389, "nt1": "///A/776", "nt2": "///A/1803", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 69.425, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 50.427, "chi2": -179.382, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.502, "C1C1_dist": 10.608, "N1N9_dist": 8.851, "C6C8_dist": 9.774, "CNNC_torsion": 4.521, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.72]", "interBase_angle": 17.942, "planarity": 0.212, "simple_Shear": -0.220, "simple_Stretch": -0.162, "simple_Buckle": -17.430, "simple_Propeller": -4.256, "bp_simpleParams": [ -0.220, -0.162, -0.953, -17.430, -4.256, 2.033 ], "bp_params": [ -0.218, -0.165, -0.953, -17.376, -4.471, 2.012 ], "frame": { "rmsd": null, "origin": [ 221.350, 191.792, 210.074 ], "x_axis": [ -0.213, 0.575, -0.790 ], "y_axis": [ -0.360, 0.706, 0.610 ], "z_axis": [ 0.908, 0.415, 0.057 ], "quaternion": [ 0.622, 0.078, 0.682, 0.376 ] } }, { "index": 390, "nt1": "///A/783", "nt2": "///A/807", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.585, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.659, "chi2": -157.698, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.337, "C1C1_dist": 10.750, "N1N9_dist": 8.913, "C6C8_dist": 9.793, "CNNC_torsion": 8.310, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 8.738, "planarity": 0.226, "simple_Shear": 0.162, "simple_Stretch": -0.230, "simple_Buckle": -7.172, "simple_Propeller": 4.993, "bp_simpleParams": [ 0.162, -0.230, -0.692, -7.172, 4.993, -1.883 ], "bp_params": [ 0.160, -0.231, -0.692, -7.123, 5.062, -1.881 ], "frame": { "rmsd": null, "origin": [ 205.531, 184.131, 221.187 ], "x_axis": [ -0.036, -0.917, 0.396 ], "y_axis": [ -0.791, 0.269, 0.550 ], "z_axis": [ -0.611, -0.294, -0.735 ], "quaternion": [ -0.353, -0.598, 0.714, 0.090 ] } }, { "index": 391, "nt1": "///A/784", "nt2": "///A/806", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.539, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.672, "chi2": -166.815, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.722, "C1C1_dist": 10.641, "N1N9_dist": 8.898, "C6C8_dist": 9.836, "CNNC_torsion": 9.866, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 11.704, "planarity": 0.157, "simple_Shear": 0.191, "simple_Stretch": -0.182, "simple_Buckle": 1.927, "simple_Propeller": 11.544, "bp_simpleParams": [ 0.191, -0.182, -0.367, 1.927, 11.544, -0.251 ], "bp_params": [ 0.189, -0.185, -0.367, 2.103, 11.513, -0.252 ], "frame": { "rmsd": null, "origin": [ 204.626, 182.250, 218.521 ], "x_axis": [ -0.383, -0.596, 0.706 ], "y_axis": [ -0.632, 0.727, 0.270 ], "z_axis": [ -0.674, -0.343, -0.655 ], "quaternion": [ -0.415, -0.369, 0.831, -0.022 ] } }, { "index": 392, "nt1": "///A/785", "nt2": "///A/805", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.935, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.508, "chi2": -173.710, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.449, "C1C1_dist": 10.766, "N1N9_dist": 8.989, "C6C8_dist": 9.892, "CNNC_torsion": 7.372, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.83],N3-N1(imino)[2.95],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 4.603, "planarity": 0.150, "simple_Shear": 0.108, "simple_Stretch": -0.153, "simple_Buckle": 3.782, "simple_Propeller": 2.624, "bp_simpleParams": [ 0.108, -0.153, -0.770, 3.782, 2.624, -1.004 ], "bp_params": [ 0.107, -0.154, -0.770, 3.799, 2.598, -1.004 ], "frame": { "rmsd": null, "origin": [ 203.430, 179.173, 216.992 ], "x_axis": [ -0.526, 0.003, 0.851 ], "y_axis": [ -0.415, 0.872, -0.259 ], "z_axis": [ -0.742, -0.490, -0.457 ], "quaternion": [ -0.471, -0.122, 0.845, -0.222 ] } }, { "index": 393, "nt1": "///A/786", "nt2": "///A/787", "bp": "A+C", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -100.594, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 138.167, "chi2": -159.999, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 38.750, "C1C1_dist": 6.808, "N1N9_dist": 6.753, "C6C8_dist": 6.818, "CNNC_torsion": 15.476, "hbonds_num": 1, "hbonds_desc": "N3-N4(amino)[2.66]", "interBase_angle": 10.162, "planarity": 0.162, "simple_Shear": -0.188, "simple_Stretch": 6.633, "simple_Buckle": -3.943, "simple_Propeller": 9.365, "bp_simpleParams": [ -0.188, 6.633, -0.974, -3.943, 9.365, -1.601 ], "bp_params": [ 6.626, 0.355, -0.974, 9.265, 4.172, -1.597 ], "frame": { "rmsd": null, "origin": [ 201.441, 176.541, 215.980 ], "x_axis": [ -0.681, 0.682, 0.267 ], "y_axis": [ 0.041, 0.400, -0.916 ], "z_axis": [ -0.731, -0.613, -0.301 ], "quaternion": [ -0.323, 0.234, 0.772, -0.495 ] } }, { "index": 394, "nt1": "///A/787", "nt2": "///A/804", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.999, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.718, "chi2": -179.944, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.405, "C1C1_dist": 10.420, "N1N9_dist": 8.755, "C6C8_dist": 9.722, "CNNC_torsion": 9.408, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 2.568, "planarity": 0.276, "simple_Shear": 0.157, "simple_Stretch": -0.363, "simple_Buckle": -2.061, "simple_Propeller": -1.531, "bp_simpleParams": [ 0.157, -0.363, -1.117, -2.061, -1.531, 1.590 ], "bp_params": [ 0.153, -0.365, -1.117, -2.078, -1.508, 1.590 ], "frame": { "rmsd": null, "origin": [ 203.007, 173.606, 214.725 ], "x_axis": [ -0.698, 0.667, 0.259 ], "y_axis": [ 0.087, 0.438, -0.895 ], "z_axis": [ -0.711, -0.602, -0.364 ], "quaternion": [ -0.307, 0.238, 0.791, -0.473 ] } }, { "index": 395, "nt1": "///A/788", "nt2": "///A/803", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.102, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.556, "chi2": -152.944, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.565, "C1C1_dist": 10.721, "N1N9_dist": 8.948, "C6C8_dist": 9.865, "CNNC_torsion": 3.270, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 8.254, "planarity": 0.110, "simple_Shear": -0.199, "simple_Stretch": -0.133, "simple_Buckle": -5.612, "simple_Propeller": 6.052, "bp_simpleParams": [ -0.199, -0.133, -0.147, -5.612, 6.052, 0.093 ], "bp_params": [ -0.197, -0.136, -0.147, -5.710, 5.959, 0.093 ], "frame": { "rmsd": null, "origin": [ 200.276, 170.244, 214.855 ], "x_axis": [ -0.538, 0.839, -0.084 ], "y_axis": [ 0.396, 0.164, -0.903 ], "z_axis": [ -0.744, -0.519, -0.421 ], "quaternion": [ -0.227, 0.424, 0.729, -0.488 ] } }, { "index": 396, "nt1": "///A/789", "nt2": "///A/802", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.171, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.298, "chi2": -159.130, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.406, "C1C1_dist": 10.617, "N1N9_dist": 8.901, "C6C8_dist": 9.867, "CNNC_torsion": 2.276, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 8.519, "planarity": 0.138, "simple_Shear": 0.233, "simple_Stretch": -0.142, "simple_Buckle": 3.490, "simple_Propeller": 7.771, "bp_simpleParams": [ 0.233, -0.142, 0.152, 3.490, 7.771, 1.812 ], "bp_params": [ 0.230, -0.147, 0.152, 3.637, 7.703, 1.816 ], "frame": { "rmsd": null, "origin": [ 197.123, 169.192, 214.145 ], "x_axis": [ -0.166, 0.868, -0.467 ], "y_axis": [ 0.607, -0.283, -0.742 ], "z_axis": [ -0.777, -0.407, -0.480 ], "quaternion": [ -0.133, 0.632, 0.584, -0.492 ] } }, { "index": 397, "nt1": "///A/790", "nt2": "///A/801", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.649, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.232, "chi2": -166.938, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.795, "C1C1_dist": 10.718, "N1N9_dist": 8.927, "C6C8_dist": 9.826, "CNNC_torsion": -3.845, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.93],N1-N3(imino)[2.89]", "interBase_angle": 5.380, "planarity": 0.127, "simple_Shear": 0.077, "simple_Stretch": -0.107, "simple_Buckle": -5.180, "simple_Propeller": 1.453, "bp_simpleParams": [ 0.077, -0.107, 0.370, -5.180, 1.453, -2.113 ], "bp_params": [ 0.076, -0.108, 0.370, -5.162, 1.514, -2.111 ], "frame": { "rmsd": null, "origin": [ 193.734, 169.378, 212.977 ], "x_axis": [ 0.452, 0.616, -0.645 ], "y_axis": [ 0.500, -0.774, -0.389 ], "z_axis": [ -0.739, -0.147, -0.658 ], "quaternion": [ -0.071, 0.849, 0.329, -0.407 ] } }, { "index": 398, "nt1": "///A/791", "nt2": "///A/800", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.794, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.488, "chi2": -167.242, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.659, "C1C1_dist": 10.615, "N1N9_dist": 8.886, "C6C8_dist": 9.841, "CNNC_torsion": -0.397, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 8.126, "planarity": 0.146, "simple_Shear": 0.208, "simple_Stretch": -0.185, "simple_Buckle": -1.659, "simple_Propeller": 7.955, "bp_simpleParams": [ 0.208, -0.185, 0.494, -1.659, 7.955, 1.775 ], "bp_params": [ 0.205, -0.188, 0.494, -1.533, 7.980, 1.779 ], "frame": { "rmsd": null, "origin": [ 190.774, 170.460, 211.138 ], "x_axis": [ 0.673, 0.112, -0.731 ], "y_axis": [ 0.190, -0.981, 0.025 ], "z_axis": [ -0.715, -0.156, -0.682 ], "quaternion": [ 0.049, 0.913, 0.083, -0.396 ] } }, { "index": 399, "nt1": "///A/792", "nt2": "///A/797", "bp": "G+A", "name": "--", "Saenger": "10-X", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -172.776, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 112.293, "chi2": -174.105, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 9.477, "C1C1_dist": 9.822, "N1N9_dist": 9.039, "C6C8_dist": 9.897, "CNNC_torsion": 132.325, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[3.16],N2(amino)-N1[2.77],N3-N6(amino)[2.93]", "interBase_angle": 18.249, "planarity": 0.232, "simple_Shear": 1.845, "simple_Stretch": 4.622, "simple_Buckle": -11.491, "simple_Propeller": -14.177, "bp_simpleParams": [ 1.845, 4.622, 0.014, -11.491, -14.177, -69.281 ], "bp_params": [ 3.748, -3.274, 0.014, -9.574, 15.537, -69.589 ], "frame": { "rmsd": null, "origin": [ 188.542, 171.777, 208.584 ], "x_axis": [ 0.264, -0.939, -0.220 ], "y_axis": [ -0.807, -0.340, 0.482 ], "z_axis": [ -0.527, 0.051, -0.848 ], "quaternion": [ 0.138, 0.783, -0.558, -0.239 ] } }, { "index": 400, "nt1": "///A/793", "nt2": "///A/795", "bp": "U-G", "name": "--", "Saenger": "--", "LW": ".SS", "DSSR": ".m-m", "intra_chain": true, "chi1": -150.463, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 129.699, "chi2": -117.785, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 91.443, "C1C1_dist": 5.609, "N1N9_dist": 7.029, "C6C8_dist": 8.774, "CNNC_torsion": 126.494, "hbonds_num": 2, "hbonds_desc": "O4'*N3[3.29],O2(carbonyl)-N2(amino)[3.98]", "interBase_angle": 16.556, "planarity": 0.434, "simple_Shear": -0.685, "simple_Stretch": 9.713, "simple_Buckle": -16.457, "simple_Propeller": -1.812, "bp_simpleParams": [ -0.685, 9.713, 1.766, -16.457, -1.812, -163.528 ], "bp_params": [ -4.501, -8.634, 1.766, 14.965, -7.083, -163.420 ], "frame": { "rmsd": null, "origin": [ 186.824, 171.064, 205.098 ], "x_axis": [ -0.800, -0.227, 0.555 ], "y_axis": [ -0.256, 0.966, 0.027 ], "z_axis": [ -0.542, -0.121, -0.831 ], "quaternion": [ -0.289, -0.127, 0.948, -0.025 ] } }, { "index": 401, "nt1": "///A/794", "nt2": "///A/2043", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": -157.683, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 76.357, "chi2": -131.159, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 125.091, "C1C1_dist": 5.912, "N1N9_dist": 6.429, "C6C8_dist": 8.840, "CNNC_torsion": 17.529, "hbonds_num": 1, "hbonds_desc": "N3(imino)-N3[3.20]", "interBase_angle": 18.285, "planarity": 0.271, "simple_Shear": -1.887, "simple_Stretch": 2.195, "simple_Buckle": 3.773, "simple_Propeller": 17.892, "bp_simpleParams": [ -1.887, 2.195, -1.428, 3.773, 17.892, 91.208 ], "bp_params": [ -2.450, 1.542, -1.428, -1.694, 18.207, 91.928 ], "frame": { "rmsd": null, "origin": [ 170.396, 162.878, 204.357 ], "x_axis": [ -0.214, -0.973, 0.085 ], "y_axis": [ 0.977, -0.214, 0.013 ], "z_axis": [ 0.005, 0.086, 0.996 ], "quaternion": [ 0.626, -0.029, -0.032, -0.779 ] } }, { "index": 402, "nt1": "///A/796", "nt2": "///A/800", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": 166.306, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 39.283, "chi2": -167.242, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 130.841, "C1C1_dist": 8.437, "N1N9_dist": 8.267, "C6C8_dist": 9.664, "CNNC_torsion": 14.892, "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[2.87],N1-O2'(hydroxyl)[2.73]", "interBase_angle": 30.305, "planarity": 0.421, "simple_Shear": -5.242, "simple_Stretch": 3.404, "simple_Buckle": 29.054, "simple_Propeller": -8.618, "bp_simpleParams": [ -5.242, 3.404, 0.523, 29.054, -8.618, 65.437 ], "bp_params": [ -6.213, -0.676, 0.523, 27.896, 11.840, 64.170 ], "frame": { "rmsd": null, "origin": [ 188.682, 172.002, 212.911 ], "x_axis": [ 0.697, -0.416, -0.583 ], "y_axis": [ -0.338, -0.909, 0.244 ], "z_axis": [ -0.632, 0.027, -0.775 ], "quaternion": [ 0.059, 0.919, -0.205, -0.330 ] } }, { "index": 403, "nt1": "///A/799", "nt2": "///A/2638", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -116.666, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 56.128, "chi2": -101.561, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 56.406, "C1C1_dist": 11.341, "N1N9_dist": 9.728, "C6C8_dist": 10.798, "CNNC_torsion": 28.172, "hbonds_num": 1, "hbonds_desc": "N1-N3(imino)[3.80]", "interBase_angle": 38.632, "planarity": 0.457, "simple_Shear": -0.081, "simple_Stretch": 0.885, "simple_Buckle": 6.152, "simple_Propeller": 38.139, "bp_simpleParams": [ -0.081, 0.885, 0.420, 6.152, 38.139, 9.243 ], "bp_params": [ -0.076, 0.885, 0.420, 6.179, 38.134, 9.765 ], "frame": { "rmsd": null, "origin": [ 190.018, 176.901, 201.418 ], "x_axis": [ -0.237, 0.673, -0.701 ], "y_axis": [ -0.518, 0.523, 0.677 ], "z_axis": [ 0.822, 0.524, 0.225 ], "quaternion": [ 0.614, 0.062, 0.620, 0.485 ] } }, { "index": 404, "nt1": "///A/805", "nt2": "///A/2010", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -173.710, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 144.405, "chi2": 95.413, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 45.383, "C1C1_dist": 7.007, "N1N9_dist": 7.178, "C6C8_dist": 7.269, "CNNC_torsion": -12.175, "hbonds_num": 1, "hbonds_desc": "N2(amino)*N6(amino)[2.93]", "interBase_angle": 25.888, "planarity": 0.323, "simple_Shear": 0.097, "simple_Stretch": 7.322, "simple_Buckle": 23.232, "simple_Propeller": 11.422, "bp_simpleParams": [ 0.097, 7.322, 0.721, 23.232, 11.422, 3.244 ], "bp_params": [ 7.313, 0.378, 0.721, 12.808, -22.497, 3.287 ], "frame": { "rmsd": null, "origin": [ 205.389, 179.302, 213.850 ], "x_axis": [ -0.695, -0.055, 0.717 ], "y_axis": [ 0.292, -0.933, 0.210 ], "z_axis": [ 0.657, 0.355, 0.665 ], "quaternion": [ -0.096, 0.379, 0.156, 0.907 ] } }, { "index": 405, "nt1": "///A/811", "nt2": "///A/1804", "bp": "A+U", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": -89.053, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 46.196, "chi2": 179.166, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.129, "C1C1_dist": 9.068, "N1N9_dist": 7.234, "C6C8_dist": 6.645, "CNNC_torsion": -0.771, "hbonds_num": 2, "hbonds_desc": "N7-N3(imino)[3.21],N6(amino)-O4(carbonyl)[3.02]", "interBase_angle": 11.847, "planarity": 0.151, "simple_Shear": -3.362, "simple_Stretch": 1.715, "simple_Buckle": 10.401, "simple_Propeller": -5.672, "bp_simpleParams": [ -3.362, 1.715, 0.576, 10.401, -5.672, 74.357 ], "bp_params": [ 0.567, -3.731, 0.576, -1.466, 11.756, 74.643 ], "frame": { "rmsd": null, "origin": [ 215.603, 194.093, 207.142 ], "x_axis": [ 0.374, -0.615, -0.695 ], "y_axis": [ 0.315, -0.620, 0.718 ], "z_axis": [ -0.872, -0.487, -0.038 ], "quaternion": [ 0.423, 0.713, -0.105, -0.550 ] } }, { "index": 406, "nt1": "///A/811", "nt2": "///A/1818", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": -89.053, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 30.688, "chi2": 175.849, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 118.405, "C1C1_dist": 10.336, "N1N9_dist": 9.796, "C6C8_dist": 10.891, "CNNC_torsion": 15.368, "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[3.71],N1-O2'(hydroxyl)[3.56]", "interBase_angle": 27.912, "planarity": 0.358, "simple_Shear": -6.088, "simple_Stretch": 4.306, "simple_Buckle": 24.930, "simple_Propeller": -12.552, "bp_simpleParams": [ -6.088, 4.306, -0.074, 24.930, -12.552, 39.918 ], "bp_params": [ -7.401, -0.916, -0.074, 26.846, 7.639, 38.994 ], "frame": { "rmsd": null, "origin": [ 216.797, 191.973, 204.404 ], "x_axis": [ 0.484, -0.760, -0.433 ], "y_axis": [ 0.360, -0.278, 0.891 ], "z_axis": [ -0.797, -0.587, 0.139 ], "quaternion": [ 0.580, 0.637, -0.157, -0.483 ] } }, { "index": 407, "nt1": "///A/817", "nt2": "///A/1393", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -161.730, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 86.478, "chi2": -175.215, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 63.643, "C1C1_dist": 8.477, "N1N9_dist": 8.220, "C6C8_dist": 10.417, "CNNC_torsion": -175.767, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.88],N2(amino)-N3[3.59]", "interBase_angle": 41.729, "planarity": 0.518, "simple_Shear": 7.278, "simple_Stretch": 4.457, "simple_Buckle": -41.729, "simple_Propeller": 0.106, "bp_simpleParams": [ 7.278, 4.457, -1.713, -41.729, 0.106, -156.815 ], "bp_params": [ -2.602, -8.128, -1.713, 31.671, 27.171, -156.535 ], "frame": { "rmsd": null, "origin": [ 194.766, 211.625, 214.845 ], "x_axis": [ -0.885, -0.268, 0.380 ], "y_axis": [ -0.144, 0.935, 0.324 ], "z_axis": [ -0.442, 0.232, -0.867 ], "quaternion": [ -0.214, -0.107, 0.960, 0.145 ] } }, { "index": 408, "nt1": "///A/821", "nt2": "///A/824", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -67.370, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 154.782, "chi2": -165.776, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 104.518, "C1C1_dist": 5.969, "N1N9_dist": 7.712, "C6C8_dist": 10.232, "CNNC_torsion": 15.770, "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.76]", "interBase_angle": 26.314, "planarity": 0.423, "simple_Shear": 0.393, "simple_Stretch": 8.102, "simple_Buckle": 25.591, "simple_Propeller": 6.126, "bp_simpleParams": [ 0.393, 8.102, 1.501, 25.591, 6.126, 156.281 ], "bp_params": [ 2.192, 7.810, 1.501, 26.314, 0.162, 155.660 ], "frame": { "rmsd": null, "origin": [ 190.355, 200.907, 197.064 ], "x_axis": [ -0.092, -0.826, 0.556 ], "y_axis": [ -0.319, 0.554, 0.769 ], "z_axis": [ -0.943, -0.107, -0.315 ], "quaternion": [ 0.535, 0.409, -0.700, -0.237 ] } }, { "index": 409, "nt1": "///A/822", "nt2": "///A/838", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -134.918, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 51.834, "chi2": -138.178, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 52.377, "C1C1_dist": 10.646, "N1N9_dist": 8.850, "C6C8_dist": 9.729, "CNNC_torsion": 5.898, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.86],N1(imino)-N3[2.85],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 17.190, "planarity": 0.205, "simple_Shear": -0.202, "simple_Stretch": -0.183, "simple_Buckle": 15.614, "simple_Propeller": 7.189, "bp_simpleParams": [ -0.202, -0.183, 0.129, 15.614, 7.189, -1.346 ], "bp_params": [ -0.200, -0.185, 0.129, 15.547, 7.333, -1.336 ], "frame": { "rmsd": null, "origin": [ 188.931, 197.673, 194.348 ], "x_axis": [ -0.414, 0.099, 0.905 ], "y_axis": [ 0.015, 0.995, -0.102 ], "z_axis": [ -0.910, -0.029, -0.413 ], "quaternion": [ 0.540, -0.034, -0.840, 0.039 ] } }, { "index": 410, "nt1": "///A/824", "nt2": "///A/834", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.776, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.776, "chi2": -148.093, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.930, "C1C1_dist": 10.642, "N1N9_dist": 8.924, "C6C8_dist": 9.846, "CNNC_torsion": -1.354, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 13.068, "planarity": 0.141, "simple_Shear": -0.199, "simple_Stretch": -0.122, "simple_Buckle": -12.096, "simple_Propeller": -4.946, "bp_simpleParams": [ -0.199, -0.122, -0.405, -12.096, -4.946, 0.442 ], "bp_params": [ -0.198, -0.125, -0.405, -12.037, -5.088, 0.440 ], "frame": { "rmsd": null, "origin": [ 192.626, 199.675, 193.611 ], "x_axis": [ 0.030, -0.724, -0.689 ], "y_axis": [ 0.216, 0.678, -0.703 ], "z_axis": [ 0.976, -0.127, 0.177 ], "quaternion": [ 0.686, -0.210, 0.606, -0.342 ] } }, { "index": 411, "nt1": "///A/825", "nt2": "///A/833", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.854, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.155, "chi2": -157.013, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.547, "C1C1_dist": 11.127, "N1N9_dist": 9.414, "C6C8_dist": 10.329, "CNNC_torsion": 10.219, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.50],N1(imino)-N3[3.48],N2(amino)-O2(carbonyl)[3.34]", "interBase_angle": 12.999, "planarity": 0.231, "simple_Shear": 0.204, "simple_Stretch": 0.300, "simple_Buckle": -12.993, "simple_Propeller": 0.386, "bp_simpleParams": [ 0.204, 0.300, -1.339, -12.993, 0.386, -0.403 ], "bp_params": [ 0.211, 0.295, -1.339, -12.980, 0.703, -0.401 ], "frame": { "rmsd": null, "origin": [ 196.080, 198.244, 195.433 ], "x_axis": [ 0.095, -0.282, -0.955 ], "y_axis": [ 0.145, 0.953, -0.267 ], "z_axis": [ 0.985, -0.113, 0.131 ], "quaternion": [ 0.738, -0.052, 0.657, -0.145 ] } }, { "index": 412, "nt1": "///A/826", "nt2": "///A/832", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.179, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 67.374, "chi2": 178.816, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 39.223, "C1C1_dist": 10.636, "N1N9_dist": 8.937, "C6C8_dist": 9.801, "CNNC_torsion": 7.273, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.88],N3(imino)-O6(carbonyl)[2.92]", "interBase_angle": 6.881, "planarity": 0.113, "simple_Shear": 2.537, "simple_Stretch": 0.121, "simple_Buckle": -0.582, "simple_Propeller": 6.856, "bp_simpleParams": [ 2.537, 0.121, -0.436, -0.582, 6.856, -2.136 ], "bp_params": [ 2.487, -0.517, -0.436, 1.152, 6.784, -2.139 ], "frame": { "rmsd": null, "origin": [ 199.016, 196.886, 195.672 ], "x_axis": [ 0.079, 0.422, -0.903 ], "y_axis": [ 0.032, 0.904, 0.426 ], "z_axis": [ 0.996, -0.063, 0.058 ], "quaternion": [ 0.715, 0.171, 0.665, 0.137 ] } }, { "index": 413, "nt1": "///A/827", "nt2": "///A/830", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -162.319, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 109.075, "chi2": -61.408, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 16.835, "C1C1_dist": 10.100, "N1N9_dist": 9.227, "C6C8_dist": 9.987, "CNNC_torsion": -15.601, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[3.31],N3-N6(amino)[3.16]", "interBase_angle": 7.857, "planarity": 0.108, "simple_Shear": 7.067, "simple_Stretch": 3.286, "simple_Buckle": 7.703, "simple_Propeller": -1.547, "bp_simpleParams": [ 7.067, 3.286, 0.007, 7.703, -1.547, 15.816 ], "bp_params": [ 7.254, -2.850, 0.007, 4.196, -6.642, 15.832 ], "frame": { "rmsd": null, "origin": [ 202.200, 195.399, 195.091 ], "x_axis": [ -0.049, 0.889, -0.456 ], "y_axis": [ 0.090, 0.458, 0.884 ], "z_axis": [ 0.995, 0.002, -0.103 ], "quaternion": [ 0.571, 0.386, 0.635, 0.349 ] } }, { "index": 414, "nt1": "///A/828", "nt2": "///A/1805", "bp": "A+G", "name": "Linker", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -149.261, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.832, "chi2": 170.880, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 84.885, "C1C1_dist": 8.816, "N1N9_dist": 8.375, "C6C8_dist": 10.622, "CNNC_torsion": 168.256, "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.01],N3-N2(amino)[3.16]", "interBase_angle": 14.719, "planarity": 0.231, "simple_Shear": 6.794, "simple_Stretch": 3.870, "simple_Buckle": 8.487, "simple_Propeller": -12.026, "bp_simpleParams": [ 6.794, 3.870, -1.158, 8.487, -12.026, 152.664 ], "bp_params": [ 2.143, 7.519, -1.158, 14.477, -2.660, 152.459 ], "frame": { "rmsd": null, "origin": [ 212.877, 190.678, 205.622 ], "x_axis": [ 0.307, -0.226, 0.925 ], "y_axis": [ -0.555, 0.747, 0.366 ], "z_axis": [ -0.773, -0.626, 0.103 ], "quaternion": [ 0.734, 0.338, -0.578, 0.112 ] } }, { "index": 415, "nt1": "///A/831", "nt2": "///A/840", "bp": "U+A", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": 54.730, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 60.347, "chi2": -53.410, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 47.467, "C1C1_dist": 10.350, "N1N9_dist": 8.642, "C6C8_dist": 7.784, "CNNC_torsion": 15.464, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N6(amino)[3.15]", "interBase_angle": 23.978, "planarity": 0.416, "simple_Shear": -4.736, "simple_Stretch": 3.378, "simple_Buckle": -22.669, "simple_Propeller": -7.815, "bp_simpleParams": [ -4.736, 3.378, 1.114, -22.669, -7.815, 77.381 ], "bp_params": [ 1.313, -5.667, 1.114, 22.131, -9.229, 76.517 ], "frame": { "rmsd": null, "origin": [ 198.249, 192.072, 185.675 ], "x_axis": [ -0.132, 0.470, -0.873 ], "y_axis": [ -0.770, 0.505, 0.388 ], "z_axis": [ 0.624, 0.724, 0.295 ], "quaternion": [ 0.646, -0.130, 0.579, 0.480 ] } }, { "index": 416, "nt1": "///A/852", "nt2": "///A/2096", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -162.043, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 109.876, "chi2": -126.958, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 109.224, "C1C1_dist": 9.126, "N1N9_dist": 10.145, "C6C8_dist": 12.700, "CNNC_torsion": 31.660, "hbonds_num": 1, "hbonds_desc": "N2(amino)*N2(amino)[3.10]", "interBase_angle": 34.459, "planarity": 0.472, "simple_Shear": 0.335, "simple_Stretch": 7.818, "simple_Buckle": -24.602, "simple_Propeller": 24.127, "bp_simpleParams": [ 0.335, 7.818, 0.031, -24.602, 24.127, 121.845 ], "bp_params": [ 0.728, 7.791, 0.031, -23.364, 25.328, 121.998 ], "frame": { "rmsd": null, "origin": [ 176.716, 182.063, 174.706 ], "x_axis": [ -0.491, -0.093, 0.866 ], "y_axis": [ -0.772, 0.506, -0.384 ], "z_axis": [ -0.403, -0.857, -0.320 ], "quaternion": [ -0.417, -0.284, 0.761, -0.408 ] } }, { "index": 417, "nt1": "///A/855", "nt2": "///A/1294", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -172.941, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 112.886, "chi2": -157.542, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 153.974, "C1C1_dist": 5.687, "N1N9_dist": 7.618, "C6C8_dist": 10.232, "CNNC_torsion": -9.072, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.89],N2(amino)-N3[3.64]", "interBase_angle": 24.432, "planarity": 0.287, "simple_Shear": -0.257, "simple_Stretch": 8.434, "simple_Buckle": 18.222, "simple_Propeller": -16.276, "bp_simpleParams": [ -0.257, 8.434, 1.113, 18.222, -16.276, 159.023 ], "bp_params": [ -1.816, 8.240, 1.113, 20.935, -12.597, 158.798 ], "frame": { "rmsd": null, "origin": [ 160.132, 181.235, 176.022 ], "x_axis": [ -0.482, 0.862, -0.158 ], "y_axis": [ 0.587, 0.184, -0.789 ], "z_axis": [ -0.650, -0.473, -0.594 ], "quaternion": [ -0.164, 0.482, 0.752, -0.419 ] } }, { "index": 418, "nt1": "///A/859", "nt2": "///A/1236", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.007, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.804, "chi2": 174.835, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.733, "C1C1_dist": 10.541, "N1N9_dist": 8.864, "C6C8_dist": 9.848, "CNNC_torsion": -8.187, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.99]", "interBase_angle": 1.294, "planarity": 0.183, "simple_Shear": 0.169, "simple_Stretch": -0.207, "simple_Buckle": 0.078, "simple_Propeller": -1.292, "bp_simpleParams": [ 0.169, -0.207, 0.820, 0.078, -1.292, 2.060 ], "bp_params": [ 0.167, -0.209, 0.820, 0.062, -1.293, 2.059 ], "frame": { "rmsd": null, "origin": [ 138.673, 176.385, 165.975 ], "x_axis": [ 0.480, 0.814, -0.328 ], "y_axis": [ 0.605, -0.037, 0.795 ], "z_axis": [ 0.635, -0.580, -0.510 ], "quaternion": [ 0.483, 0.712, 0.498, 0.108 ] } }, { "index": 419, "nt1": "///A/860", "nt2": "///A/1235", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.012, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.988, "chi2": -163.972, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.382, "C1C1_dist": 10.685, "N1N9_dist": 8.939, "C6C8_dist": 9.869, "CNNC_torsion": -1.713, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.89],O4(carbonyl)-N6(amino)[2.98]", "interBase_angle": 2.610, "planarity": 0.043, "simple_Shear": -0.048, "simple_Stretch": -0.067, "simple_Buckle": 2.361, "simple_Propeller": -1.111, "bp_simpleParams": [ -0.048, -0.067, 0.075, 2.361, -1.111, -0.612 ], "bp_params": [ -0.048, -0.067, 0.075, 2.372, -1.087, -0.612 ], "frame": { "rmsd": null, "origin": [ 138.613, 174.085, 162.314 ], "x_axis": [ 0.714, 0.700, -0.017 ], "y_axis": [ 0.384, -0.370, 0.846 ], "z_axis": [ 0.586, -0.610, -0.533 ], "quaternion": [ 0.450, 0.809, 0.335, 0.176 ] } }, { "index": 420, "nt1": "///A/861", "nt2": "///A/1234", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.826, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.603, "chi2": -175.632, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.118, "C1C1_dist": 10.608, "N1N9_dist": 8.873, "C6C8_dist": 9.817, "CNNC_torsion": 1.152, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 10.800, "planarity": 0.192, "simple_Shear": 0.211, "simple_Stretch": -0.169, "simple_Buckle": 8.729, "simple_Propeller": 6.359, "bp_simpleParams": [ 0.211, -0.169, 0.228, 8.729, 6.359, 0.715 ], "bp_params": [ 0.208, -0.173, 0.228, 8.847, 6.194, 0.714 ], "frame": { "rmsd": null, "origin": [ 140.310, 172.887, 158.979 ], "x_axis": [ 0.864, 0.329, 0.381 ], "y_axis": [ -0.091, -0.642, 0.761 ], "z_axis": [ 0.495, -0.692, -0.525 ], "quaternion": [ 0.417, 0.870, 0.068, 0.252 ] } }, { "index": 421, "nt1": "///A/862", "nt2": "///A/1233", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.010, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.108, "chi2": -179.356, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.895, "C1C1_dist": 10.913, "N1N9_dist": 9.122, "C6C8_dist": 9.906, "CNNC_torsion": 17.132, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[3.11],O4(carbonyl)-N6(amino)[3.06]", "interBase_angle": 18.767, "planarity": 0.268, "simple_Shear": -0.297, "simple_Stretch": 0.028, "simple_Buckle": 17.160, "simple_Propeller": 7.598, "bp_simpleParams": [ -0.297, 0.028, -1.189, 17.160, 7.598, -7.701 ], "bp_params": [ -0.297, 0.020, -1.189, 16.952, 8.053, -7.637 ], "frame": { "rmsd": null, "origin": [ 142.192, 172.424, 155.735 ], "x_axis": [ 0.726, -0.020, 0.687 ], "y_axis": [ -0.417, -0.807, 0.417 ], "z_axis": [ 0.546, -0.590, -0.595 ], "quaternion": [ 0.285, 0.884, -0.124, 0.349 ] } }, { "index": 422, "nt1": "///A/863", "nt2": "///A/1232", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.745, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.670, "chi2": -174.606, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.398, "C1C1_dist": 10.697, "N1N9_dist": 8.948, "C6C8_dist": 9.895, "CNNC_torsion": 15.247, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.98]", "interBase_angle": 14.853, "planarity": 0.203, "simple_Shear": 0.095, "simple_Stretch": -0.128, "simple_Buckle": 3.170, "simple_Propeller": 14.510, "bp_simpleParams": [ 0.095, -0.128, -0.461, 3.170, 14.510, 0.163 ], "bp_params": [ 0.094, -0.129, -0.461, 3.258, 14.491, 0.164 ], "frame": { "rmsd": null, "origin": [ 145.850, 171.393, 153.664 ], "x_axis": [ 0.231, -0.349, 0.908 ], "y_axis": [ -0.757, -0.651, -0.058 ], "z_axis": [ 0.612, -0.674, -0.415 ], "quaternion": [ 0.203, 0.758, -0.365, 0.501 ] } }, { "index": 423, "nt1": "///A/864", "nt2": "///A/1231", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.013, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.410, "chi2": -177.775, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.569, "C1C1_dist": 11.371, "N1N9_dist": 9.688, "C6C8_dist": 10.642, "CNNC_torsion": 20.796, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.44],N4(amino)-O6(carbonyl)[3.77]", "interBase_angle": 16.972, "planarity": 0.250, "simple_Shear": -0.657, "simple_Stretch": 0.629, "simple_Buckle": 9.103, "simple_Propeller": 14.325, "bp_simpleParams": [ -0.657, 0.629, -0.876, 9.103, 14.325, -0.094 ], "bp_params": [ -0.697, 0.585, -0.876, 8.118, 14.905, -0.095 ], "frame": { "rmsd": null, "origin": [ 149.400, 170.037, 153.760 ], "x_axis": [ -0.174, -0.539, 0.824 ], "y_axis": [ -0.716, -0.506, -0.481 ], "z_axis": [ 0.676, -0.674, -0.298 ], "quaternion": [ 0.075, 0.638, -0.491, 0.588 ] } }, { "index": 424, "nt1": "///A/865", "nt2": "///A/1230", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -173.647, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 94.159, "chi2": 177.714, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 5.604, "C1C1_dist": 10.100, "N1N9_dist": 8.843, "C6C8_dist": 9.237, "CNNC_torsion": -160.025, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.93],N3-N6(amino)[3.11]", "interBase_angle": 8.454, "planarity": 0.115, "simple_Shear": 7.336, "simple_Stretch": 2.779, "simple_Buckle": 1.744, "simple_Propeller": 8.272, "bp_simpleParams": [ 7.336, 2.779, -0.056, 1.744, 8.272, -8.180 ], "bp_params": [ 6.928, -3.679, -0.056, 7.366, 4.150, -8.169 ], "frame": { "rmsd": null, "origin": [ 152.779, 168.076, 153.824 ], "x_axis": [ -0.736, -0.676, 0.041 ], "y_axis": [ -0.225, 0.187, -0.956 ], "z_axis": [ 0.639, -0.713, -0.290 ], "quaternion": [ 0.201, -0.303, 0.744, -0.561 ] } }, { "index": 425, "nt1": "///A/867", "nt2": "///A/1019", "bp": "A+A", "name": "--", "Saenger": "02-II", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": -175.161, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 20.962, "chi2": -142.204, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 18.194, "C1C1_dist": 11.349, "N1N9_dist": 8.618, "C6C8_dist": 6.644, "CNNC_torsion": -106.263, "hbonds_num": 2, "hbonds_desc": "OP2-N6(amino)[3.36],N7-N6(amino)[3.49]", "interBase_angle": 23.641, "planarity": 0.401, "simple_Shear": -8.202, "simple_Stretch": 1.580, "simple_Buckle": -23.549, "simple_Propeller": 2.081, "bp_simpleParams": [ -8.202, 1.580, -1.371, -23.549, 2.081, 162.970 ], "bp_params": [ 6.118, -5.687, -1.371, 18.885, -14.221, 162.867 ], "frame": { "rmsd": null, "origin": [ 161.319, 164.931, 153.268 ], "x_axis": [ 0.253, 0.003, 0.968 ], "y_axis": [ -0.755, -0.625, 0.199 ], "z_axis": [ 0.605, -0.781, -0.156 ], "quaternion": [ 0.343, 0.713, -0.264, 0.551 ] } }, { "index": 426, "nt1": "///A/868", "nt2": "///A/1018", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -142.549, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 8.933, "chi2": -140.464, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 97.804, "C1C1_dist": 9.709, "N1N9_dist": 8.543, "C6C8_dist": 9.002, "CNNC_torsion": -11.708, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[3.35],N6(amino)-O2'(hydroxyl)[3.10],N6(amino)-N3[3.26]", "interBase_angle": 24.711, "planarity": 0.358, "simple_Shear": -7.519, "simple_Stretch": 2.656, "simple_Buckle": -13.908, "simple_Propeller": -20.426, "bp_simpleParams": [ -7.519, 2.656, -0.695, -13.908, -20.426, 2.082 ], "bp_params": [ -6.844, -4.091, -0.695, 6.908, -23.726, 2.124 ], "frame": { "rmsd": null, "origin": [ 163.633, 162.668, 153.133 ], "x_axis": [ -0.757, -0.566, -0.326 ], "y_axis": [ 0.215, 0.255, -0.943 ], "z_axis": [ 0.617, -0.784, -0.071 ], "quaternion": [ 0.327, -0.122, 0.722, -0.598 ] } }, { "index": 427, "nt1": "///A/869", "nt2": "///A/882", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -118.296, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 57.305, "chi2": -175.973, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.644, "C1C1_dist": 10.425, "N1N9_dist": 8.846, "C6C8_dist": 9.844, "CNNC_torsion": 4.097, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.89],O4(carbonyl)-N6(amino)[3.01]", "interBase_angle": 11.749, "planarity": 0.194, "simple_Shear": -0.040, "simple_Stretch": -0.075, "simple_Buckle": 10.502, "simple_Propeller": 5.267, "bp_simpleParams": [ -0.040, -0.075, 0.349, 10.502, 5.267, 2.053 ], "bp_params": [ -0.040, -0.076, 0.349, 10.470, 5.331, 2.047 ], "frame": { "rmsd": null, "origin": [ 167.887, 174.841, 144.793 ], "x_axis": [ -0.207, 0.396, 0.895 ], "y_axis": [ 0.288, -0.849, 0.442 ], "z_axis": [ 0.935, 0.350, 0.062 ], "quaternion": [ 0.037, 0.629, 0.272, 0.728 ] } }, { "index": 428, "nt1": "///A/870", "nt2": "///A/881", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.503, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.732, "chi2": -162.954, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.414, "C1C1_dist": 10.832, "N1N9_dist": 8.982, "C6C8_dist": 9.823, "CNNC_torsion": 8.650, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.92],N1-N3(imino)[2.90]", "interBase_angle": 8.368, "planarity": 0.128, "simple_Shear": 0.051, "simple_Stretch": -0.111, "simple_Buckle": -3.713, "simple_Propeller": 7.499, "bp_simpleParams": [ 0.051, -0.111, -0.445, -3.713, 7.499, -4.499 ], "bp_params": [ 0.050, -0.111, -0.445, -3.642, 7.534, -4.507 ], "frame": { "rmsd": null, "origin": [ 170.576, 177.541, 143.775 ], "x_axis": [ -0.187, -0.252, 0.950 ], "y_axis": [ 0.438, -0.887, -0.149 ], "z_axis": [ 0.879, 0.388, 0.276 ], "quaternion": [ -0.225, 0.596, 0.078, 0.766 ] } }, { "index": 429, "nt1": "///A/871", "nt2": "///A/880", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -146.049, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 56.293, "chi2": -165.279, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.480, "C1C1_dist": 10.493, "N1N9_dist": 8.811, "C6C8_dist": 9.742, "CNNC_torsion": 22.011, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.84],N2(amino)-O2(carbonyl)[2.70]", "interBase_angle": 16.619, "planarity": 0.278, "simple_Shear": -0.157, "simple_Stretch": -0.303, "simple_Buckle": 4.801, "simple_Propeller": 15.911, "bp_simpleParams": [ -0.157, -0.303, -0.777, 4.801, 15.911, -1.816 ], "bp_params": [ -0.154, -0.305, -0.777, 4.629, 15.961, -1.832 ], "frame": { "rmsd": null, "origin": [ 172.501, 179.909, 145.561 ], "x_axis": [ -0.086, -0.675, 0.732 ], "y_axis": [ 0.483, -0.671, -0.562 ], "z_axis": [ 0.871, 0.306, 0.384 ], "quaternion": [ -0.396, 0.548, -0.088, 0.732 ] } }, { "index": 430, "nt1": "///A/871", "nt2": "///A/2387", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm+M", "intra_chain": true, "chi1": -146.049, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 95.427, "chi2": -136.037, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 23.390, "C1C1_dist": 7.468, "N1N9_dist": 6.509, "C6C8_dist": 6.866, "CNNC_torsion": 134.324, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N1[2.55],N3-N6(amino)[2.72]", "interBase_angle": 83.412, "planarity": 1.054, "simple_Shear": 1.275, "simple_Stretch": 3.813, "simple_Buckle": -80.818, "simple_Propeller": 20.639, "bp_simpleParams": [ 1.275, 3.813, -3.309, -80.818, 20.639, -41.123 ], "bp_params": [ 3.358, -2.212, -3.309, 37.705, 74.403, -48.819 ], "frame": { "rmsd": null, "origin": [ 172.741, 181.507, 143.462 ], "x_axis": [ 0.565, -0.625, 0.539 ], "y_axis": [ 0.280, -0.469, -0.838 ], "z_axis": [ 0.776, 0.624, -0.090 ], "quaternion": [ 0.501, -0.729, 0.119, -0.451 ] } }, { "index": 431, "nt1": "///A/872", "nt2": "///A/879", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.257, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.425, "chi2": 174.077, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.783, "C1C1_dist": 10.381, "N1N9_dist": 8.729, "C6C8_dist": 9.641, "CNNC_torsion": 21.942, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.66],N3-N1(imino)[2.83],N4(amino)-O6(carbonyl)[2.97]", "interBase_angle": 17.838, "planarity": 0.292, "simple_Shear": 0.136, "simple_Stretch": -0.384, "simple_Buckle": 13.340, "simple_Propeller": 11.842, "bp_simpleParams": [ 0.136, -0.384, -1.273, 13.340, 11.842, -1.782 ], "bp_params": [ 0.130, -0.386, -1.273, 13.529, 11.625, -1.779 ], "frame": { "rmsd": null, "origin": [ 174.194, 181.422, 148.549 ], "x_axis": [ 0.153, -0.955, 0.253 ], "y_axis": [ 0.506, -0.144, -0.850 ], "z_axis": [ 0.849, 0.258, 0.462 ], "quaternion": [ 0.606, -0.457, 0.246, -0.603 ] } }, { "index": 432, "nt1": "///A/874", "nt2": "///A/2097", "bp": "U+U", "name": "--", "Saenger": "--", "LW": ".SW", "DSSR": ".m+W", "intra_chain": true, "chi1": -149.476, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 106.934, "chi2": -158.511, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.324, "C1C1_dist": 7.159, "N1N9_dist": 6.910, "C6C8_dist": 9.004, "CNNC_torsion": 105.278, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N3(imino)[2.78],O2'(hydroxyl)-O4(carbonyl)[2.97],O2(carbonyl)*O2(carbonyl)[3.07]", "unusual_base2base_hbonds": 1, "interBase_angle": 63.420, "planarity": 0.812, "simple_Shear": 4.802, "simple_Stretch": 2.644, "simple_Buckle": 5.744, "simple_Propeller": -63.159, "bp_simpleParams": [ 4.802, 2.644, 0.398, 5.744, -63.159, -111.382 ], "bp_params": [ -1.266, -5.334, 0.398, -50.294, 38.633, -108.921 ], "frame": { "rmsd": null, "origin": [ 187.332, 189.230, 157.841 ], "x_axis": [ -0.276, 0.356, -0.893 ], "y_axis": [ -0.961, -0.117, 0.251 ], "z_axis": [ -0.015, 0.927, 0.374 ], "quaternion": [ 0.495, -0.341, 0.443, 0.665 ] } }, { "index": 433, "nt1": "///A/883", "nt2": "///A/989", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.206, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 39.966, "chi2": 177.370, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.526, "C1C1_dist": 10.798, "N1N9_dist": 8.882, "C6C8_dist": 9.532, "CNNC_torsion": -6.054, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.90],N1(imino)-O2(carbonyl)[3.28]", "interBase_angle": 20.903, "planarity": 0.321, "simple_Shear": -1.877, "simple_Stretch": -0.306, "simple_Buckle": 16.023, "simple_Propeller": 13.424, "bp_simpleParams": [ -1.877, -0.306, 1.595, 16.023, 13.424, -7.866 ], "bp_params": [ -1.793, -0.635, 1.595, 13.402, 16.041, -7.890 ], "frame": { "rmsd": null, "origin": [ 164.472, 175.178, 147.257 ], "x_axis": [ -0.333, 0.922, 0.197 ], "y_axis": [ 0.212, 0.277, -0.937 ], "z_axis": [ -0.919, -0.270, -0.288 ], "quaternion": [ -0.405, 0.412, 0.689, -0.438 ] } }, { "index": 434, "nt1": "///A/884", "nt2": "///A/988", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.716, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.122, "chi2": -168.284, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.212, "C1C1_dist": 10.406, "N1N9_dist": 8.639, "C6C8_dist": 9.571, "CNNC_torsion": -5.929, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.80],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.87]", "interBase_angle": 16.213, "planarity": 0.413, "simple_Shear": 0.234, "simple_Stretch": -0.396, "simple_Buckle": 14.908, "simple_Propeller": 6.373, "bp_simpleParams": [ 0.234, -0.396, 1.006, 14.908, 6.373, 2.115 ], "bp_params": [ 0.225, -0.402, 1.006, 15.055, 6.017, 2.100 ], "frame": { "rmsd": null, "origin": [ 160.806, 175.262, 147.618 ], "x_axis": [ -0.005, 0.894, -0.447 ], "y_axis": [ 0.286, -0.427, -0.858 ], "z_axis": [ -0.958, -0.132, -0.253 ], "quaternion": [ -0.280, 0.647, 0.456, -0.543 ] } }, { "index": 435, "nt1": "///A/885", "nt2": "///A/986", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.127, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.787, "chi2": -172.405, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.698, "C1C1_dist": 10.624, "N1N9_dist": 8.901, "C6C8_dist": 9.849, "CNNC_torsion": 2.034, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 6.290, "planarity": 0.140, "simple_Shear": 0.186, "simple_Stretch": -0.171, "simple_Buckle": 1.928, "simple_Propeller": 5.987, "bp_simpleParams": [ 0.186, -0.171, 0.386, 1.928, 5.987, 1.364 ], "bp_params": [ 0.184, -0.173, 0.386, 2.013, 5.959, 1.366 ], "frame": { "rmsd": null, "origin": [ 154.260, 177.937, 146.326 ], "x_axis": [ 0.312, 0.344, -0.886 ], "y_axis": [ 0.321, -0.915, -0.243 ], "z_axis": [ -0.894, -0.209, -0.396 ], "quaternion": [ -0.010, 0.810, 0.205, -0.549 ] } }, { "index": 436, "nt1": "///A/886", "nt2": "///A/985", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.516, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 65.866, "chi2": -179.856, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 41.869, "C1C1_dist": 10.670, "N1N9_dist": 8.976, "C6C8_dist": 9.882, "CNNC_torsion": 2.059, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.93],N3(imino)-O6(carbonyl)[3.00]", "interBase_angle": 6.924, "planarity": 0.123, "simple_Shear": 2.297, "simple_Stretch": 0.148, "simple_Buckle": 1.692, "simple_Propeller": 6.715, "bp_simpleParams": [ 2.297, 0.148, 0.238, 1.692, 6.715, -0.194 ], "bp_params": [ 2.271, -0.376, 0.238, 3.167, 6.158, -0.194 ], "frame": { "rmsd": null, "origin": [ 151.188, 179.203, 144.755 ], "x_axis": [ 0.463, -0.305, -0.833 ], "y_axis": [ -0.005, -0.940, 0.341 ], "z_axis": [ -0.887, -0.154, -0.436 ], "quaternion": [ 0.147, 0.842, -0.092, -0.510 ] } }, { "index": 437, "nt1": "///A/887", "nt2": "///A/984", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -153.148, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.958, "chi2": -167.282, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.884, "C1C1_dist": 10.518, "N1N9_dist": 8.867, "C6C8_dist": 9.836, "CNNC_torsion": 4.130, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 1.052, "planarity": 0.125, "simple_Shear": 0.223, "simple_Stretch": -0.203, "simple_Buckle": 0.302, "simple_Propeller": -1.008, "bp_simpleParams": [ 0.223, -0.203, -0.554, 0.302, -1.008, 1.051 ], "bp_params": [ 0.220, -0.207, -0.554, 0.284, -1.013, 1.051 ], "frame": { "rmsd": null, "origin": [ 149.232, 180.846, 141.886 ], "x_axis": [ 0.541, -0.652, -0.531 ], "y_axis": [ -0.407, -0.755, 0.514 ], "z_axis": [ -0.736, -0.062, -0.674 ], "quaternion": [ 0.167, 0.862, -0.307, -0.368 ] } }, { "index": 438, "nt1": "///A/888", "nt2": "///A/983", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.019, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.137, "chi2": -157.992, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.740, "C1C1_dist": 10.548, "N1N9_dist": 8.853, "C6C8_dist": 9.815, "CNNC_torsion": 4.212, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.97],N1-N3(imino)[2.83]", "interBase_angle": 8.018, "planarity": 0.096, "simple_Shear": 0.047, "simple_Stretch": -0.113, "simple_Buckle": -5.409, "simple_Propeller": 5.920, "bp_simpleParams": [ 0.047, -0.113, -0.105, -5.409, 5.920, 0.855 ], "bp_params": [ 0.046, -0.113, -0.105, -5.358, 5.966, 0.855 ], "frame": { "rmsd": null, "origin": [ 147.727, 181.126, 138.696 ], "x_axis": [ 0.459, -0.887, -0.039 ], "y_axis": [ -0.627, -0.355, 0.693 ], "z_axis": [ -0.629, -0.294, -0.719 ], "quaternion": [ 0.310, 0.796, -0.476, -0.210 ] } }, { "index": 439, "nt1": "///A/889", "nt2": "///A/982", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.062, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.017, "chi2": -167.576, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.505, "C1C1_dist": 10.563, "N1N9_dist": 8.820, "C6C8_dist": 9.765, "CNNC_torsion": 5.194, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.91],N1-N3(imino)[2.78]", "interBase_angle": 8.388, "planarity": 0.101, "simple_Shear": 0.109, "simple_Stretch": -0.167, "simple_Buckle": 2.331, "simple_Propeller": 8.058, "bp_simpleParams": [ 0.109, -0.167, -0.032, 2.331, 8.058, 0.034 ], "bp_params": [ 0.106, -0.169, -0.032, 2.459, 8.019, 0.034 ], "frame": { "rmsd": null, "origin": [ 146.872, 180.274, 135.562 ], "x_axis": [ 0.097, -0.901, 0.423 ], "y_axis": [ -0.789, 0.190, 0.584 ], "z_axis": [ -0.607, -0.390, -0.693 ], "quaternion": [ -0.385, -0.632, 0.668, 0.073 ] } }, { "index": 440, "nt1": "///A/890", "nt2": "///A/981", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.171, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.578, "chi2": -160.522, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.801, "C1C1_dist": 10.608, "N1N9_dist": 8.842, "C6C8_dist": 9.763, "CNNC_torsion": 3.914, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.87],N1(imino)-N3[2.85],N2(amino)-O2(carbonyl)[2.72]", "interBase_angle": 3.318, "planarity": 0.135, "simple_Shear": -0.170, "simple_Stretch": -0.268, "simple_Buckle": -3.204, "simple_Propeller": -0.862, "bp_simpleParams": [ -0.170, -0.268, -0.686, -3.204, -0.862, -0.031 ], "bp_params": [ -0.167, -0.270, -0.686, -3.194, -0.899, -0.031 ], "frame": { "rmsd": null, "origin": [ 146.527, 177.474, 132.897 ], "x_axis": [ -0.226, -0.646, 0.729 ], "y_axis": [ -0.826, 0.524, 0.208 ], "z_axis": [ -0.516, -0.555, -0.653 ], "quaternion": [ -0.401, -0.475, 0.775, -0.112 ] } }, { "index": 441, "nt1": "///A/891", "nt2": "///A/980", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -138.712, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.878, "chi2": -125.184, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 54.718, "C1C1_dist": 10.506, "N1N9_dist": 8.799, "C6C8_dist": 9.685, "CNNC_torsion": 18.411, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.87],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 14.662, "planarity": 0.256, "simple_Shear": -0.072, "simple_Stretch": -0.349, "simple_Buckle": -13.635, "simple_Propeller": 5.390, "bp_simpleParams": [ -0.072, -0.349, -1.278, -13.635, 5.390, -2.841 ], "bp_params": [ -0.070, -0.349, -1.278, -13.675, 5.288, -2.824 ], "frame": { "rmsd": null, "origin": [ 146.124, 173.380, 130.491 ], "x_axis": [ -0.747, -0.318, 0.583 ], "y_axis": [ -0.620, 0.649, -0.440 ], "z_axis": [ -0.238, -0.691, -0.683 ], "quaternion": [ -0.234, -0.267, 0.877, -0.322 ] } }, { "index": 442, "nt1": "///A/892", "nt2": "///A/894", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -160.303, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 125.897, "chi2": -106.129, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.857, "C1C1_dist": 8.114, "N1N9_dist": 8.154, "C6C8_dist": 9.836, "CNNC_torsion": -27.723, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.37],O2(carbonyl)*N1[3.12]", "unusual_base2base_hbonds": 1, "interBase_angle": 43.167, "planarity": 0.631, "simple_Shear": 4.154, "simple_Stretch": 3.216, "simple_Buckle": 43.096, "simple_Propeller": -2.483, "bp_simpleParams": [ 4.154, 3.216, 1.658, 43.096, -2.483, 70.466 ], "bp_params": [ 5.197, 0.769, 1.658, 36.417, -23.178, 68.853 ], "frame": { "rmsd": null, "origin": [ 142.702, 172.432, 129.762 ], "x_axis": [ -0.618, -0.262, 0.741 ], "y_axis": [ -0.617, 0.746, -0.251 ], "z_axis": [ -0.487, -0.613, -0.622 ], "quaternion": [ -0.355, -0.254, 0.864, -0.250 ] } }, { "index": 443, "nt1": "///A/894", "nt2": "///A/979", "bp": "A+U", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": -106.129, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 33.189, "chi2": 174.745, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.300, "C1C1_dist": 9.950, "N1N9_dist": 7.783, "C6C8_dist": 7.227, "CNNC_torsion": 19.214, "hbonds_num": 2, "hbonds_desc": "N7-N3(imino)[3.58],N6(amino)-O4(carbonyl)[2.82]", "interBase_angle": 36.233, "planarity": 0.480, "simple_Shear": -3.106, "simple_Stretch": 1.299, "simple_Buckle": -10.258, "simple_Propeller": 34.750, "bp_simpleParams": [ -3.106, 1.299, 0.863, -10.258, 34.750, 87.425 ], "bp_params": [ 0.440, -3.338, 0.863, -25.078, -26.151, 87.550 ], "frame": { "rmsd": null, "origin": [ 145.664, 171.754, 128.578 ], "x_axis": [ -0.700, -0.120, 0.704 ], "y_axis": [ 0.474, -0.815, 0.333 ], "z_axis": [ 0.534, 0.567, 0.628 ], "quaternion": [ -0.167, 0.349, 0.254, 0.886 ] } }, { "index": 444, "nt1": "///A/894", "nt2": "///A/980", "bp": "A+C", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": -106.129, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.574, "chi2": -125.184, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 77.077, "C1C1_dist": 7.702, "N1N9_dist": 6.395, "C6C8_dist": 6.404, "CNNC_torsion": -13.338, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[2.96]", "interBase_angle": 43.738, "planarity": 0.877, "simple_Shear": -0.692, "simple_Stretch": 1.145, "simple_Buckle": -3.359, "simple_Propeller": 43.609, "bp_simpleParams": [ -0.692, 1.145, -1.219, -3.359, 43.609, 43.997 ], "bp_params": [ -0.922, -0.970, -1.219, -41.236, -14.583, 41.766 ], "frame": { "rmsd": null, "origin": [ 145.393, 173.187, 129.223 ], "x_axis": [ -0.459, -0.432, 0.776 ], "y_axis": [ 0.746, -0.662, 0.074 ], "z_axis": [ 0.482, 0.613, 0.626 ], "quaternion": [ -0.355, 0.380, 0.207, 0.829 ] } }, { "index": 445, "nt1": "///A/895", "nt2": "///A/977", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.783, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 34.306, "chi2": -174.591, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 68.324, "C1C1_dist": 10.510, "N1N9_dist": 8.763, "C6C8_dist": 9.532, "CNNC_torsion": -4.764, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.75],N1(imino)-O2(carbonyl)[2.86]", "interBase_angle": 12.069, "planarity": 0.160, "simple_Shear": -3.320, "simple_Stretch": 0.108, "simple_Buckle": -9.509, "simple_Propeller": -7.433, "bp_simpleParams": [ -3.320, 0.108, -0.653, -9.509, -7.433, -3.973 ], "bp_params": [ -3.173, -0.982, -0.653, -6.564, -10.128, -3.982 ], "frame": { "rmsd": null, "origin": [ 146.321, 162.173, 127.233 ], "x_axis": [ -0.730, 0.061, -0.681 ], "y_axis": [ 0.411, 0.835, -0.366 ], "z_axis": [ 0.547, -0.546, -0.634 ], "quaternion": [ 0.343, 0.132, 0.894, -0.255 ] } }, { "index": 446, "nt1": "///A/896", "nt2": "///A/976", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.922, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.409, "chi2": -156.036, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.139, "C1C1_dist": 10.759, "N1N9_dist": 8.971, "C6C8_dist": 9.827, "CNNC_torsion": 3.680, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.95],N1-N3(imino)[2.96]", "interBase_angle": 13.857, "planarity": 0.218, "simple_Shear": 0.159, "simple_Stretch": -0.126, "simple_Buckle": -12.180, "simple_Propeller": -6.606, "bp_simpleParams": [ 0.159, -0.126, -1.149, -12.180, -6.606, -2.356 ], "bp_params": [ 0.156, -0.129, -1.149, -12.341, -6.301, -2.346 ], "frame": { "rmsd": null, "origin": [ 148.240, 159.056, 125.646 ], "x_axis": [ -0.232, 0.649, -0.724 ], "y_axis": [ 0.776, 0.572, 0.264 ], "z_axis": [ 0.586, -0.501, -0.637 ], "quaternion": [ 0.419, 0.456, 0.781, -0.076 ] } }, { "index": 447, "nt1": "///A/897", "nt2": "///A/975", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.702, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.448, "chi2": -159.689, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.551, "C1C1_dist": 10.581, "N1N9_dist": 8.886, "C6C8_dist": 9.847, "CNNC_torsion": -1.958, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.71]", "interBase_angle": 4.984, "planarity": 0.106, "simple_Shear": -0.219, "simple_Stretch": -0.163, "simple_Buckle": 0.657, "simple_Propeller": 4.941, "bp_simpleParams": [ -0.219, -0.163, 0.369, 0.657, 4.941, 2.448 ], "bp_params": [ -0.216, -0.166, 0.369, 0.572, 4.951, 2.450 ], "frame": { "rmsd": null, "origin": [ 149.136, 157.031, 123.510 ], "x_axis": [ 0.007, 0.938, -0.348 ], "y_axis": [ 0.630, 0.266, 0.729 ], "z_axis": [ 0.776, -0.225, -0.589 ], "quaternion": [ 0.414, 0.577, 0.680, 0.186 ] } }, { "index": 448, "nt1": "///A/898", "nt2": "///A/974", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 176.580, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.509, "chi2": -179.552, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.796, "C1C1_dist": 10.874, "N1N9_dist": 8.983, "C6C8_dist": 9.851, "CNNC_torsion": -0.887, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.91],O4(carbonyl)-N6(amino)[2.94]", "interBase_angle": 8.454, "planarity": 0.126, "simple_Shear": -0.130, "simple_Stretch": -0.066, "simple_Buckle": 5.573, "simple_Propeller": 6.358, "bp_simpleParams": [ -0.130, -0.066, 0.229, 5.573, 6.358, -1.901 ], "bp_params": [ -0.129, -0.069, 0.229, 5.466, 6.450, -1.902 ], "frame": { "rmsd": null, "origin": [ 150.729, 156.110, 120.589 ], "x_axis": [ 0.298, 0.941, 0.161 ], "y_axis": [ 0.548, -0.307, 0.778 ], "z_axis": [ 0.781, -0.144, -0.608 ], "quaternion": [ 0.310, 0.744, 0.500, 0.317 ] } }, { "index": 449, "nt1": "///A/899", "nt2": "///A/973", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.704, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.416, "chi2": -140.336, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.338, "C1C1_dist": 10.328, "N1N9_dist": 8.705, "C6C8_dist": 9.735, "CNNC_torsion": 1.200, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.50],N3-N1(imino)[2.82],N4(amino)-O6(carbonyl)[3.01]", "interBase_angle": 14.045, "planarity": 0.168, "simple_Shear": 0.526, "simple_Stretch": -0.184, "simple_Buckle": 14.043, "simple_Propeller": -0.238, "bp_simpleParams": [ 0.526, -0.184, -0.220, 14.043, -0.238, 5.085 ], "bp_params": [ 0.516, -0.209, -0.220, 14.016, -0.900, 5.047 ], "frame": { "rmsd": null, "origin": [ 152.120, 155.772, 117.770 ], "x_axis": [ 0.450, 0.649, 0.613 ], "y_axis": [ 0.385, -0.760, 0.523 ], "z_axis": [ 0.806, 0.001, -0.592 ], "quaternion": [ 0.156, 0.837, 0.309, 0.424 ] } }, { "index": 450, "nt1": "///A/900", "nt2": "///A/973", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -57.806, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 56.417, "chi2": -140.336, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 69.052, "C1C1_dist": 8.340, "N1N9_dist": 7.015, "C6C8_dist": 8.032, "CNNC_torsion": 13.905, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N1(imino)[2.85]", "interBase_angle": 65.209, "planarity": 1.032, "simple_Shear": -1.368, "simple_Stretch": -0.594, "simple_Buckle": 61.164, "simple_Propeller": 22.610, "bp_simpleParams": [ -1.368, -0.594, 0.969, 61.164, 22.610, 17.772 ], "bp_params": [ -1.304, -0.724, 0.969, 59.479, 26.730, 16.018 ], "frame": { "rmsd": null, "origin": [ 152.053, 155.658, 116.725 ], "x_axis": [ 0.282, 0.531, 0.799 ], "y_axis": [ 0.654, -0.716, 0.245 ], "z_axis": [ 0.702, 0.454, -0.549 ], "quaternion": [ -0.065, 0.798, 0.371, 0.470 ] } }, { "index": 451, "nt1": "///A/901", "nt2": "///A/971", "bp": "U+A", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": 90.102, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 49.719, "chi2": -50.821, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 60.049, "C1C1_dist": 10.291, "N1N9_dist": 8.603, "C6C8_dist": 8.429, "CNNC_torsion": -1.960, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N6(amino)[2.54]", "interBase_angle": 62.225, "planarity": 0.658, "simple_Shear": -3.137, "simple_Stretch": 2.245, "simple_Buckle": -32.192, "simple_Propeller": -53.250, "bp_simpleParams": [ -3.137, 2.245, -0.275, -32.192, -53.250, 84.955 ], "bp_params": [ -0.397, -3.837, -0.275, 62.225, -0.148, 76.186 ], "frame": { "rmsd": null, "origin": [ 159.201, 157.224, 115.153 ], "x_axis": [ 0.047, 0.168, 0.985 ], "y_axis": [ -0.768, 0.636, -0.072 ], "z_axis": [ -0.638, -0.753, 0.159 ], "quaternion": [ 0.679, 0.251, -0.598, 0.345 ] } }, { "index": 452, "nt1": "///A/902", "nt2": "///A/969", "bp": "G+C", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": 175.617, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 36.397, "chi2": -43.959, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 43.520, "C1C1_dist": 11.015, "N1N9_dist": 8.783, "C6C8_dist": 7.873, "CNNC_torsion": -41.472, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.67]", "interBase_angle": 28.887, "planarity": 0.500, "simple_Shear": -5.046, "simple_Stretch": 1.643, "simple_Buckle": 26.895, "simple_Propeller": -10.542, "bp_simpleParams": [ -5.046, 1.643, 1.684, 26.895, -10.542, -104.443 ], "bp_params": [ -1.919, 4.948, 1.684, 8.992, -27.452, -105.872 ], "frame": { "rmsd": null, "origin": [ 163.945, 158.451, 117.966 ], "x_axis": [ -0.320, -0.940, -0.116 ], "y_axis": [ -0.370, 0.236, -0.899 ], "z_axis": [ 0.872, -0.244, -0.423 ], "quaternion": [ 0.351, -0.466, 0.703, -0.406 ] } }, { "index": 453, "nt1": "///A/903", "nt2": "///A/968", "bp": "G+C", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": 76.427, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 20.485, "chi2": -150.268, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.657, "C1C1_dist": 10.941, "N1N9_dist": 8.719, "C6C8_dist": 8.398, "CNNC_torsion": 19.012, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.65]", "interBase_angle": 25.278, "planarity": 0.344, "simple_Shear": -2.432, "simple_Stretch": 0.563, "simple_Buckle": 23.693, "simple_Propeller": -8.811, "bp_simpleParams": [ -2.432, 0.563, 1.776, 23.693, -8.811, 109.688 ], "bp_params": [ 0.227, -2.486, 1.776, 0.844, 25.264, 111.003 ], "frame": { "rmsd": null, "origin": [ 167.154, 156.797, 117.235 ], "x_axis": [ -0.561, -0.375, 0.738 ], "y_axis": [ 0.392, 0.665, 0.636 ], "z_axis": [ -0.729, 0.646, -0.227 ], "quaternion": [ -0.468, 0.005, 0.783, 0.409 ] } }, { "index": 454, "nt1": "///A/904", "nt2": "///A/967", "bp": "A-G", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -144.202, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.521, "chi2": -167.111, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 42.594, "C1C1_dist": 12.600, "N1N9_dist": 10.522, "C6C8_dist": 10.903, "CNNC_torsion": 3.609, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O6(carbonyl)[2.87],N1-N1(imino)[2.92]", "interBase_angle": 14.441, "planarity": 0.363, "simple_Shear": 0.616, "simple_Stretch": 1.193, "simple_Buckle": -11.995, "simple_Propeller": -8.042, "bp_simpleParams": [ 0.616, 1.193, -1.267, -11.995, -8.042, -16.488 ], "bp_params": [ 0.693, 1.150, -1.267, -12.502, -7.227, -16.424 ], "frame": { "rmsd": null, "origin": [ 170.332, 156.721, 119.393 ], "x_axis": [ -0.447, -0.644, -0.620 ], "y_axis": [ 0.447, 0.439, -0.779 ], "z_axis": [ 0.775, -0.626, 0.092 ], "quaternion": [ 0.520, -0.074, 0.670, -0.524 ] } }, { "index": 455, "nt1": "///A/904", "nt2": "///A/968", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -144.202, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.415, "chi2": -150.268, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 74.262, "C1C1_dist": 9.389, "N1N9_dist": 8.294, "C6C8_dist": 9.698, "CNNC_torsion": -18.280, "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[3.98],N1*O2(carbonyl)[3.12]", "unusual_base2base_hbonds": 1, "interBase_angle": 26.626, "planarity": 0.490, "simple_Shear": -1.101, "simple_Stretch": 0.206, "simple_Buckle": -25.274, "simple_Propeller": -8.376, "bp_simpleParams": [ -1.101, 0.206, 1.250, -25.274, -8.376, 25.292 ], "bp_params": [ -1.116, 0.098, 1.250, -24.387, -10.687, 24.848 ], "frame": { "rmsd": null, "origin": [ 169.148, 157.120, 118.407 ], "x_axis": [ -0.571, -0.759, -0.311 ], "y_axis": [ 0.365, 0.105, -0.925 ], "z_axis": [ 0.735, -0.642, 0.217 ], "quaternion": [ -0.433, 0.163, -0.604, 0.649 ] } }, { "index": 456, "nt1": "///A/907", "nt2": "///A/964", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -134.457, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 46.401, "chi2": -178.556, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 21.636, "C1C1_dist": 8.665, "N1N9_dist": 6.479, "C6C8_dist": 5.882, "CNNC_torsion": -163.988, "hbonds_num": 4, "hbonds_desc": "O2(carbonyl)*N7[2.44],O2(carbonyl)-N6(amino)[2.87],N3(imino)-N7[2.93],O4(carbonyl)*OP2[3.17]", "unusual_base2base_hbonds": 1, "interBase_angle": 14.517, "planarity": 0.253, "simple_Shear": 5.843, "simple_Stretch": 1.583, "simple_Buckle": 2.605, "simple_Propeller": 14.281, "bp_simpleParams": [ 5.843, 1.583, -0.567, 2.605, 14.281, -86.486 ], "bp_params": [ 4.654, -3.871, -0.567, 13.178, 6.090, -86.188 ], "frame": { "rmsd": null, "origin": [ 175.639, 147.220, 120.874 ], "x_axis": [ 0.409, 0.796, -0.447 ], "y_axis": [ 0.593, 0.140, 0.793 ], "z_axis": [ 0.693, -0.589, -0.415 ], "quaternion": [ 0.533, 0.649, 0.535, 0.095 ] } }, { "index": 457, "nt1": "///A/907", "nt2": "///A/2297", "bp": "U+A", "name": "--", "Saenger": "--", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": -134.457, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 75.947, "chi2": 19.575, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 21.725, "C1C1_dist": 7.417, "N1N9_dist": 5.795, "C6C8_dist": 4.158, "CNNC_torsion": 63.345, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.10]", "interBase_angle": 62.415, "planarity": 0.874, "simple_Shear": -4.233, "simple_Stretch": 4.775, "simple_Buckle": -45.851, "simple_Propeller": -42.348, "bp_simpleParams": [ -4.233, 4.775, 1.117, -45.851, -42.348, 57.449 ], "bp_params": [ 5.832, -2.591, 1.117, 24.438, 57.432, 62.982 ], "frame": { "rmsd": null, "origin": [ 175.634, 150.645, 121.160 ], "x_axis": [ -0.146, -0.094, -0.985 ], "y_axis": [ 0.368, 0.919, -0.142 ], "z_axis": [ 0.919, -0.383, -0.100 ], "quaternion": [ 0.647, 0.093, 0.736, -0.178 ] } }, { "index": 458, "nt1": "///A/908", "nt2": "///A/963", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -162.110, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 6.499, "chi2": -172.846, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 96.562, "C1C1_dist": 9.905, "N1N9_dist": 8.709, "C6C8_dist": 9.159, "CNNC_torsion": 163.157, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.99],N6(amino)-O2'(hydroxyl)[3.08],N6(amino)-N3[3.06]", "interBase_angle": 3.254, "planarity": 0.038, "simple_Shear": -7.429, "simple_Stretch": 2.721, "simple_Buckle": 1.877, "simple_Propeller": 2.658, "bp_simpleParams": [ -7.429, 2.721, -0.025, 1.877, 2.658, -3.983 ], "bp_params": [ -6.919, -3.836, -0.025, -0.781, 3.159, -3.985 ], "frame": { "rmsd": null, "origin": [ 180.629, 147.667, 117.476 ], "x_axis": [ 0.395, 0.726, -0.563 ], "y_axis": [ 0.435, 0.392, 0.811 ], "z_axis": [ 0.809, -0.565, -0.161 ], "quaternion": [ 0.638, 0.539, 0.538, 0.114 ] } }, { "index": 459, "nt1": "///A/909", "nt2": "///A/962", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.539, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.262, "chi2": -170.450, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.599, "C1C1_dist": 10.821, "N1N9_dist": 8.980, "C6C8_dist": 9.867, "CNNC_torsion": 3.199, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.83]", "interBase_angle": 6.384, "planarity": 0.137, "simple_Shear": -0.186, "simple_Stretch": -0.143, "simple_Buckle": 6.066, "simple_Propeller": 1.991, "bp_simpleParams": [ -0.186, -0.143, -0.322, 6.066, 1.991, -1.419 ], "bp_params": [ -0.184, -0.146, -0.322, 6.040, 2.068, -1.417 ], "frame": { "rmsd": null, "origin": [ 183.140, 146.449, 116.334 ], "x_axis": [ 0.521, 0.745, 0.416 ], "y_axis": [ -0.094, -0.435, 0.896 ], "z_axis": [ 0.849, -0.505, -0.157 ], "quaternion": [ 0.482, 0.727, 0.224, 0.435 ] } }, { "index": 460, "nt1": "///A/910", "nt2": "///A/961", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 177.343, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 71.373, "chi2": -168.239, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 37.254, "C1C1_dist": 12.010, "N1N9_dist": 10.378, "C6C8_dist": 11.251, "CNNC_torsion": -17.064, "hbonds_num": 1, "hbonds_desc": "N1-N4(amino)[3.70]", "interBase_angle": 29.010, "planarity": 0.364, "simple_Shear": 3.238, "simple_Stretch": 2.032, "simple_Buckle": 26.770, "simple_Propeller": -11.179, "bp_simpleParams": [ 3.238, 2.032, -0.371, 26.770, -11.179, 2.129 ], "bp_params": [ 3.719, 0.884, -0.371, 21.861, -19.071, 2.121 ], "frame": { "rmsd": null, "origin": [ 186.220, 145.791, 114.368 ], "x_axis": [ 0.338, 0.456, 0.823 ], "y_axis": [ -0.310, -0.772, 0.555 ], "z_axis": [ 0.889, -0.443, -0.119 ], "quaternion": [ 0.334, 0.747, 0.049, 0.573 ] } }, { "index": 461, "nt1": "///A/911", "nt2": "///A/913", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -129.248, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 116.747, "chi2": 132.755, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 20.299, "C1C1_dist": 8.383, "N1N9_dist": 7.781, "C6C8_dist": 8.750, "CNNC_torsion": -101.747, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N1[2.54]", "interBase_angle": 15.835, "planarity": 0.475, "simple_Shear": 2.385, "simple_Stretch": 3.532, "simple_Buckle": 8.245, "simple_Propeller": 13.520, "bp_simpleParams": [ 2.385, 3.532, 1.657, 8.245, 13.520, -67.869 ], "bp_params": [ 2.142, -3.685, 1.657, 8.599, -13.297, -68.079 ], "frame": { "rmsd": null, "origin": [ 190.395, 146.693, 114.543 ], "x_axis": [ -0.619, -0.493, 0.611 ], "y_axis": [ -0.222, -0.637, -0.738 ], "z_axis": [ 0.753, -0.593, 0.285 ], "quaternion": [ -0.085, 0.428, -0.418, 0.797 ] } }, { "index": 462, "nt1": "///A/911", "nt2": "///A/914", "bp": "G+C", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -129.248, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 86.204, "chi2": -157.033, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 25.234, "C1C1_dist": 12.165, "N1N9_dist": 10.777, "C6C8_dist": 11.242, "CNNC_torsion": 44.376, "hbonds_num": 1, "hbonds_desc": "N2(amino)*N4(amino)[2.75]", "interBase_angle": 34.710, "planarity": 0.467, "simple_Shear": -0.701, "simple_Stretch": 4.815, "simple_Buckle": -19.112, "simple_Propeller": -28.975, "bp_simpleParams": [ -0.701, 4.815, -0.399, -19.112, -28.975, -78.074 ], "bp_params": [ 4.742, 1.088, -0.399, -30.522, 16.529, -76.660 ], "frame": { "rmsd": null, "origin": [ 191.861, 148.753, 115.733 ], "x_axis": [ -0.411, -0.654, 0.634 ], "y_axis": [ 0.111, -0.727, -0.678 ], "z_axis": [ 0.905, -0.209, 0.371 ], "quaternion": [ -0.242, 0.486, -0.280, 0.792 ] } }, { "index": 463, "nt1": "///A/911", "nt2": "///A/959", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -129.248, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 51.729, "chi2": -157.191, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.341, "C1C1_dist": 10.762, "N1N9_dist": 8.897, "C6C8_dist": 9.729, "CNNC_torsion": 15.180, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.85],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.83]", "interBase_angle": 14.889, "planarity": 0.251, "simple_Shear": 0.027, "simple_Stretch": -0.300, "simple_Buckle": -13.639, "simple_Propeller": 5.971, "bp_simpleParams": [ 0.027, -0.300, -1.236, -13.639, 5.971, -4.884 ], "bp_params": [ 0.026, -0.300, -1.236, -13.625, 6.005, -4.856 ], "frame": { "rmsd": null, "origin": [ 191.276, 146.483, 116.899 ], "x_axis": [ -0.318, -0.140, 0.938 ], "y_axis": [ -0.312, -0.919, -0.243 ], "z_axis": [ 0.895, -0.370, 0.249 ], "quaternion": [ 0.054, 0.581, -0.194, 0.788 ] } }, { "index": 464, "nt1": "///A/911", "nt2": "///A/960", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -129.248, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 64.039, "chi2": -121.721, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 73.674, "C1C1_dist": 8.559, "N1N9_dist": 7.508, "C6C8_dist": 8.913, "CNNC_torsion": 0.226, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[3.48],N1(imino)-O2(carbonyl)[3.17]", "interBase_angle": 31.562, "planarity": 0.730, "simple_Shear": -0.652, "simple_Stretch": -0.634, "simple_Buckle": -27.786, "simple_Propeller": 14.971, "bp_simpleParams": [ -0.652, -0.634, 1.385, -27.786, 14.971, 28.369 ], "bp_params": [ -0.602, -0.681, 1.385, -28.922, 12.636, 27.676 ], "frame": { "rmsd": null, "origin": [ 189.972, 146.729, 117.002 ], "x_axis": [ -0.134, 0.089, 0.987 ], "y_axis": [ -0.273, -0.961, 0.049 ], "z_axis": [ 0.953, -0.263, 0.153 ], "quaternion": [ 0.121, 0.647, -0.071, 0.750 ] } }, { "index": 465, "nt1": "///A/912", "nt2": "///A/915", "bp": "C+U", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW+M", "intra_chain": true, "chi1": -104.212, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 82.165, "chi2": -156.094, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 11.462, "C1C1_dist": 10.588, "N1N9_dist": 9.012, "C6C8_dist": 9.522, "CNNC_torsion": 29.143, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)*O4(carbonyl)[2.82]", "interBase_angle": 7.839, "planarity": 0.090, "simple_Shear": -0.163, "simple_Stretch": 2.571, "simple_Buckle": -6.946, "simple_Propeller": 3.632, "bp_simpleParams": [ -0.163, 2.571, 0.036, -6.946, 3.632, -86.747 ], "bp_params": [ 2.565, 0.245, 0.036, 3.408, 7.059, -86.831 ], "frame": { "rmsd": null, "origin": [ 195.194, 148.830, 117.551 ], "x_axis": [ -0.494, -0.837, 0.236 ], "y_axis": [ 0.110, -0.329, -0.938 ], "z_axis": [ 0.863, -0.437, 0.255 ], "quaternion": [ -0.329, 0.381, -0.477, 0.721 ] } }, { "index": 466, "nt1": "///A/912", "nt2": "///A/956", "bp": "C-A", "name": "~rHoogsteen", "Saenger": "25-XXV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -104.212, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 26.446, "chi2": -148.807, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 5.486, "C1C1_dist": 11.666, "N1N9_dist": 8.907, "C6C8_dist": 7.880, "CNNC_torsion": 142.290, "hbonds_num": 2, "hbonds_desc": "N3-N6(amino)[2.81],N4(amino)-N7[3.30]", "interBase_angle": 3.864, "planarity": 0.127, "simple_Shear": 2.478, "simple_Stretch": 1.011, "simple_Buckle": -2.802, "simple_Propeller": -2.661, "bp_simpleParams": [ 2.478, 1.011, -0.609, -2.802, -2.661, -85.943 ], "bp_params": [ 2.676, 0.071, -0.609, -3.561, -1.500, -85.921 ], "frame": { "rmsd": null, "origin": [ 195.578, 148.646, 117.579 ], "x_axis": [ -0.557, -0.800, 0.222 ], "y_axis": [ 0.157, -0.364, -0.918 ], "z_axis": [ 0.815, -0.477, 0.328 ], "quaternion": [ -0.319, 0.346, -0.465, 0.750 ] } }, { "index": 467, "nt1": "///A/913", "nt2": "///A/960", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": 132.755, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 52.373, "chi2": -121.721, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 127.083, "C1C1_dist": 8.201, "N1N9_dist": 8.259, "C6C8_dist": 10.179, "CNNC_torsion": 53.054, "hbonds_num": 1, "hbonds_desc": "N1*O2(carbonyl)[2.96]", "interBase_angle": 47.049, "planarity": 0.616, "simple_Shear": -2.768, "simple_Stretch": 4.152, "simple_Buckle": -9.011, "simple_Propeller": 46.178, "bp_simpleParams": [ -2.768, 4.152, -0.079, -9.011, 46.178, 95.591 ], "bp_params": [ -4.335, 2.471, -0.079, -28.372, 37.532, 96.917 ], "frame": { "rmsd": null, "origin": [ 189.602, 146.574, 114.751 ], "x_axis": [ -0.351, -0.438, 0.828 ], "y_axis": [ -0.245, -0.810, -0.533 ], "z_axis": [ 0.904, -0.390, 0.177 ], "quaternion": [ -0.063, 0.566, -0.302, 0.765 ] } }, { "index": 468, "nt1": "///A/914", "nt2": "///A/959", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": -157.033, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 41.605, "chi2": -157.191, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 132.299, "C1C1_dist": 6.929, "N1N9_dist": 6.822, "C6C8_dist": 8.492, "CNNC_torsion": -9.898, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-O2'(hydroxyl)[2.45],N3-O2'(hydroxyl)[2.77],N4(amino)-O2(carbonyl)[2.27]", "interBase_angle": 23.143, "planarity": 0.232, "simple_Shear": -4.857, "simple_Stretch": 1.956, "simple_Buckle": 15.163, "simple_Propeller": -17.483, "bp_simpleParams": [ -4.857, 1.956, -0.085, 15.163, -17.483, 70.464 ], "bp_params": [ -5.058, -1.353, -0.085, 22.619, -4.896, 69.459 ], "frame": { "rmsd": null, "origin": [ 192.372, 148.388, 115.837 ], "x_axis": [ -0.297, -0.709, 0.640 ], "y_axis": [ 0.188, -0.700, -0.689 ], "z_axis": [ 0.936, -0.085, 0.341 ], "quaternion": [ -0.293, 0.515, -0.253, 0.765 ] } }, { "index": 469, "nt1": "///A/915", "nt2": "///A/956", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.094, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.791, "chi2": -148.807, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 55.344, "C1C1_dist": 10.491, "N1N9_dist": 8.819, "C6C8_dist": 9.746, "CNNC_torsion": 6.113, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.91],O4(carbonyl)-N6(amino)[3.00]", "interBase_angle": 11.021, "planarity": 0.277, "simple_Shear": -0.074, "simple_Stretch": -0.178, "simple_Buckle": -10.937, "simple_Propeller": -1.364, "bp_simpleParams": [ -0.074, -0.178, -0.832, -10.937, -1.364, 1.092 ], "bp_params": [ -0.072, -0.179, -0.832, -10.921, -1.487, 1.087 ], "frame": { "rmsd": null, "origin": [ 196.182, 149.768, 117.387 ], "x_axis": [ -0.276, -0.843, -0.463 ], "y_axis": [ 0.444, 0.315, -0.839 ], "z_axis": [ 0.852, -0.437, 0.287 ], "quaternion": [ 0.576, -0.175, 0.571, -0.559 ] } }, { "index": 470, "nt1": "///A/916", "nt2": "///A/955", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 171.452, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.535, "chi2": -162.398, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 47.924, "C1C1_dist": 10.961, "N1N9_dist": 9.008, "C6C8_dist": 9.824, "CNNC_torsion": -6.109, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.84],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.86]", "interBase_angle": 4.542, "planarity": 0.132, "simple_Shear": -0.085, "simple_Stretch": -0.178, "simple_Buckle": -4.253, "simple_Propeller": 1.595, "bp_simpleParams": [ -0.085, -0.178, 0.363, -4.253, 1.595, -3.111 ], "bp_params": [ -0.084, -0.178, 0.363, -4.258, 1.581, -3.109 ], "frame": { "rmsd": null, "origin": [ 198.106, 147.472, 118.387 ], "x_axis": [ -0.231, -0.565, -0.792 ], "y_axis": [ 0.492, 0.634, -0.596 ], "z_axis": [ 0.839, -0.527, 0.132 ], "quaternion": [ 0.620, -0.028, 0.658, -0.427 ] } }, { "index": 471, "nt1": "///A/917", "nt2": "///A/954", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -155.253, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.652, "chi2": 176.329, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.650, "C1C1_dist": 10.553, "N1N9_dist": 8.799, "C6C8_dist": 9.750, "CNNC_torsion": -9.662, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.95],N1-N3(imino)[2.79]", "interBase_angle": 3.251, "planarity": 0.127, "simple_Shear": 0.109, "simple_Stretch": -0.185, "simple_Buckle": -1.269, "simple_Propeller": -2.993, "bp_simpleParams": [ 0.109, -0.185, 0.499, -1.269, -2.993, 1.590 ], "bp_params": [ 0.106, -0.187, 0.499, -1.317, -2.972, 1.591 ], "frame": { "rmsd": null, "origin": [ 200.051, 145.040, 118.353 ], "x_axis": [ 0.098, 0.073, -0.992 ], "y_axis": [ 0.537, 0.836, 0.115 ], "z_axis": [ 0.838, -0.544, 0.043 ], "quaternion": [ 0.703, 0.234, 0.651, -0.165 ] } }, { "index": 472, "nt1": "///A/918", "nt2": "///A/952", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 164.419, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 31.981, "chi2": 175.990, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 32.348, "C1C1_dist": 11.840, "N1N9_dist": 9.342, "C6C8_dist": 9.304, "CNNC_torsion": 19.358, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N6(amino)[2.31]", "interBase_angle": 6.741, "planarity": 0.342, "simple_Shear": 0.422, "simple_Stretch": -0.102, "simple_Buckle": -2.504, "simple_Propeller": -6.258, "bp_simpleParams": [ 0.422, -0.102, -1.595, -2.504, -6.258, -40.692 ], "bp_params": [ 0.416, -0.122, -1.595, -2.793, -6.135, -40.734 ], "frame": { "rmsd": null, "origin": [ 203.366, 141.079, 115.311 ], "x_axis": [ 0.140, 0.539, -0.831 ], "y_axis": [ 0.365, 0.752, 0.549 ], "z_axis": [ 0.920, -0.380, -0.091 ], "quaternion": [ 0.671, 0.346, 0.652, 0.065 ] } }, { "index": 473, "nt1": "///A/918", "nt2": "///A/953", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 164.419, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.106, "chi2": -171.812, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.312, "C1C1_dist": 9.462, "N1N9_dist": 7.685, "C6C8_dist": 8.618, "CNNC_torsion": -24.958, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.10]", "interBase_angle": 2.497, "planarity": 0.414, "simple_Shear": 0.644, "simple_Stretch": -1.488, "simple_Buckle": 1.159, "simple_Propeller": -2.212, "bp_simpleParams": [ 0.644, -1.488, 1.563, 1.159, -2.212, 0.700 ], "bp_params": [ 0.554, -1.524, 1.563, 1.024, -2.277, 0.700 ], "frame": { "rmsd": null, "origin": [ 202.195, 142.367, 115.654 ], "x_axis": [ 0.038, 0.223, -0.974 ], "y_axis": [ 0.379, 0.899, 0.221 ], "z_axis": [ 0.924, -0.378, -0.051 ], "quaternion": [ 0.687, 0.218, 0.691, -0.057 ] } }, { "index": 474, "nt1": "///A/919", "nt2": "///A/952", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.720, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.038, "chi2": 175.990, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.191, "C1C1_dist": 10.157, "N1N9_dist": 8.531, "C6C8_dist": 9.537, "CNNC_torsion": -3.828, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.75],O4(carbonyl)-N6(amino)[2.90]", "interBase_angle": 7.580, "planarity": 0.289, "simple_Shear": -0.118, "simple_Stretch": -0.459, "simple_Buckle": 3.924, "simple_Propeller": 6.485, "bp_simpleParams": [ -0.118, -0.459, 1.155, 3.924, 6.485, 4.266 ], "bp_params": [ -0.111, -0.461, 1.155, 3.816, 6.549, 4.271 ], "frame": { "rmsd": null, "origin": [ 204.532, 140.362, 115.167 ], "x_axis": [ 0.180, 0.821, -0.542 ], "y_axis": [ 0.354, 0.460, 0.814 ], "z_axis": [ 0.918, -0.338, -0.207 ], "quaternion": [ 0.599, 0.481, 0.610, 0.195 ] } }, { "index": 475, "nt1": "///A/920", "nt2": "///A/951", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.549, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.733, "chi2": -177.552, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.061, "C1C1_dist": 10.397, "N1N9_dist": 8.743, "C6C8_dist": 9.720, "CNNC_torsion": -6.390, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.87],N1(imino)-N3[2.82],N2(amino)-O2(carbonyl)[2.62]", "interBase_angle": 12.326, "planarity": 0.183, "simple_Shear": -0.121, "simple_Stretch": -0.285, "simple_Buckle": 12.080, "simple_Propeller": 2.448, "bp_simpleParams": [ -0.121, -0.285, 0.950, 12.080, 2.448, 2.425 ], "bp_params": [ -0.119, -0.286, 0.950, 12.064, 2.525, 2.413 ], "frame": { "rmsd": null, "origin": [ 206.681, 139.992, 113.057 ], "x_axis": [ 0.242, 0.970, 0.024 ], "y_axis": [ 0.257, -0.087, 0.963 ], "z_axis": [ 0.936, -0.227, -0.270 ], "quaternion": [ 0.470, 0.632, 0.485, 0.379 ] } }, { "index": 476, "nt1": "///A/965", "nt2": "///A/2297", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM-W", "intra_chain": true, "chi1": -161.676, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 14.437, "chi2": 19.575, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 27.490, "C1C1_dist": 14.150, "N1N9_dist": 11.435, "C6C8_dist": 10.186, "CNNC_torsion": 38.791, "hbonds_num": 1, "hbonds_desc": "N6(amino)*N6(amino)[3.20]", "interBase_angle": 53.757, "planarity": 0.649, "simple_Shear": -0.944, "simple_Stretch": 4.080, "simple_Buckle": 32.804, "simple_Propeller": -42.587, "bp_simpleParams": [ -0.944, 4.080, -0.790, 32.804, -42.587, -97.501 ], "bp_params": [ -1.787, 3.788, -0.790, 40.719, -35.096, -96.499 ], "frame": { "rmsd": null, "origin": [ 175.565, 150.320, 124.469 ], "x_axis": [ 0.075, 0.150, -0.986 ], "y_axis": [ -0.397, -0.902, -0.168 ], "z_axis": [ -0.915, 0.404, -0.008 ], "quaternion": [ -0.203, 0.705, -0.088, -0.674 ] } }, { "index": 477, "nt1": "///A/992", "nt2": "///A/1017", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.005, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.141, "chi2": -155.293, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.497, "C1C1_dist": 10.647, "N1N9_dist": 8.904, "C6C8_dist": 9.826, "CNNC_torsion": 3.653, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.93],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 12.278, "planarity": 0.171, "simple_Shear": -0.142, "simple_Stretch": -0.168, "simple_Buckle": -12.205, "simple_Propeller": -1.344, "bp_simpleParams": [ -0.142, -0.168, -0.910, -12.205, -1.344, 0.605 ], "bp_params": [ -0.140, -0.170, -0.910, -12.193, -1.448, 0.602 ], "frame": { "rmsd": null, "origin": [ 166.370, 159.003, 152.020 ], "x_axis": [ -0.337, 0.174, -0.925 ], "y_axis": [ 0.729, 0.670, -0.140 ], "z_axis": [ 0.595, -0.722, -0.353 ], "quaternion": [ 0.495, 0.294, 0.768, -0.280 ] } }, { "index": 478, "nt1": "///A/993", "nt2": "///A/1016", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.119, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.337, "chi2": -158.477, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.096, "C1C1_dist": 10.662, "N1N9_dist": 8.917, "C6C8_dist": 9.849, "CNNC_torsion": 1.254, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.97],N1-N3(imino)[2.87]", "interBase_angle": 5.402, "planarity": 0.069, "simple_Shear": 0.121, "simple_Stretch": -0.077, "simple_Buckle": -4.793, "simple_Propeller": 2.491, "bp_simpleParams": [ 0.121, -0.077, -0.312, -4.793, 2.491, -0.381 ], "bp_params": [ 0.119, -0.079, -0.312, -4.752, 2.569, -0.381 ], "frame": { "rmsd": null, "origin": [ 167.315, 156.063, 150.978 ], "x_axis": [ 0.095, 0.586, -0.805 ], "y_axis": [ 0.777, 0.462, 0.428 ], "z_axis": [ 0.622, -0.666, -0.411 ], "quaternion": [ 0.535, 0.511, 0.667, -0.089 ] } }, { "index": 479, "nt1": "///A/993", "nt2": "///A/1030", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -160.119, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 83.632, "chi2": 57.664, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 37.874, "C1C1_dist": 7.271, "N1N9_dist": 6.404, "C6C8_dist": 6.378, "CNNC_torsion": 178.323, "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-N7[3.30]", "interBase_angle": 21.640, "planarity": 0.264, "simple_Shear": 8.425, "simple_Stretch": 6.126, "simple_Buckle": 21.185, "simple_Propeller": -4.415, "bp_simpleParams": [ 8.425, 6.126, -0.301, 21.185, -4.415, -60.681 ], "bp_params": [ 6.352, -8.256, -0.301, -3.794, -21.305, -61.526 ], "frame": { "rmsd": null, "origin": [ 168.864, 153.749, 155.271 ], "x_axis": [ 0.324, 0.870, -0.373 ], "y_axis": [ 0.628, 0.097, 0.772 ], "z_axis": [ 0.708, -0.484, -0.515 ], "quaternion": [ 0.476, 0.660, 0.568, 0.127 ] } }, { "index": 480, "nt1": "///A/994", "nt2": "///A/1015", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.177, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.006, "chi2": -165.114, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.258, "C1C1_dist": 10.589, "N1N9_dist": 8.903, "C6C8_dist": 9.875, "CNNC_torsion": -4.172, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 2.717, "planarity": 0.127, "simple_Shear": 0.188, "simple_Stretch": -0.153, "simple_Buckle": 1.168, "simple_Propeller": 2.454, "bp_simpleParams": [ 0.188, -0.153, 0.476, 1.168, 2.454, 1.818 ], "bp_params": [ 0.185, -0.156, 0.476, 1.203, 2.436, 1.818 ], "frame": { "rmsd": null, "origin": [ 168.741, 153.846, 148.492 ], "x_axis": [ 0.443, 0.780, -0.442 ], "y_axis": [ 0.601, 0.107, 0.792 ], "z_axis": [ 0.665, -0.617, -0.421 ], "quaternion": [ 0.531, 0.663, 0.521, 0.084 ] } }, { "index": 481, "nt1": "///A/995", "nt2": "///A/1014", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.441, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.074, "chi2": -168.800, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.736, "C1C1_dist": 10.365, "N1N9_dist": 8.737, "C6C8_dist": 9.745, "CNNC_torsion": 1.511, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.78],O4(carbonyl)-N6(amino)[2.95]", "interBase_angle": 6.848, "planarity": 0.120, "simple_Shear": 0.007, "simple_Stretch": -0.181, "simple_Buckle": 5.834, "simple_Propeller": 3.585, "bp_simpleParams": [ 0.007, -0.181, 0.257, 5.834, 3.585, 2.536 ], "bp_params": [ 0.008, -0.181, 0.257, 5.823, 3.604, 2.534 ], "frame": { "rmsd": null, "origin": [ 170.079, 152.299, 145.577 ], "x_axis": [ 0.631, 0.774, 0.044 ], "y_axis": [ 0.318, -0.310, 0.896 ], "z_axis": [ 0.707, -0.552, -0.442 ], "quaternion": [ 0.469, 0.772, 0.354, 0.243 ] } }, { "index": 482, "nt1": "///A/996", "nt2": "///A/1013", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.257, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 44.798, "chi2": -166.859, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 69.238, "C1C1_dist": 10.407, "N1N9_dist": 8.846, "C6C8_dist": 9.834, "CNNC_torsion": 0.067, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.99],N1(imino)-O2(carbonyl)[2.80]", "interBase_angle": 5.700, "planarity": 0.079, "simple_Shear": -2.373, "simple_Stretch": 0.119, "simple_Buckle": 4.721, "simple_Propeller": 3.195, "bp_simpleParams": [ -2.373, 0.119, 0.356, 4.721, 3.195, 3.060 ], "bp_params": [ -2.336, -0.437, 0.356, 3.849, 4.205, 3.060 ], "frame": { "rmsd": null, "origin": [ 172.117, 152.209, 142.624 ], "x_axis": [ 0.563, 0.669, 0.486 ], "y_axis": [ 0.029, -0.604, 0.797 ], "z_axis": [ 0.826, -0.434, -0.359 ], "quaternion": [ 0.387, 0.795, 0.219, 0.413 ] } }, { "index": 483, "nt1": "///A/997", "nt2": "///A/1012", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.611, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.330, "chi2": -174.242, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.727, "C1C1_dist": 10.603, "N1N9_dist": 8.871, "C6C8_dist": 9.826, "CNNC_torsion": -1.418, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 5.709, "planarity": 0.133, "simple_Shear": 0.246, "simple_Stretch": -0.180, "simple_Buckle": 4.795, "simple_Propeller": 3.098, "bp_simpleParams": [ 0.246, -0.180, 0.282, 4.795, 3.098, 1.665 ], "bp_params": [ 0.242, -0.185, 0.282, 4.857, 2.999, 1.664 ], "frame": { "rmsd": null, "origin": [ 175.075, 152.119, 140.710 ], "x_axis": [ 0.399, 0.122, 0.909 ], "y_axis": [ -0.328, -0.907, 0.265 ], "z_axis": [ 0.857, -0.403, -0.322 ], "quaternion": [ 0.206, 0.810, -0.063, 0.545 ] } }, { "index": 484, "nt1": "///A/998", "nt2": "///A/1011", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.360, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.898, "chi2": 166.187, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.993, "C1C1_dist": 10.718, "N1N9_dist": 8.900, "C6C8_dist": 9.825, "CNNC_torsion": -2.583, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.89],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.72]", "interBase_angle": 4.674, "planarity": 0.094, "simple_Shear": -0.152, "simple_Stretch": -0.194, "simple_Buckle": 3.381, "simple_Propeller": 3.228, "bp_simpleParams": [ -0.152, -0.194, 0.454, 3.381, 3.228, 0.272 ], "bp_params": [ -0.150, -0.196, 0.454, 3.346, 3.264, 0.272 ], "frame": { "rmsd": null, "origin": [ 178.580, 152.943, 140.765 ], "x_axis": [ 0.003, -0.384, 0.923 ], "y_axis": [ -0.397, -0.848, -0.351 ], "z_axis": [ 0.918, -0.366, -0.155 ], "quaternion": [ 0.005, 0.708, -0.276, 0.650 ] } }, { "index": 485, "nt1": "///A/999", "nt2": "///A/1010", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.871, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.704, "chi2": 172.446, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.297, "C1C1_dist": 10.486, "N1N9_dist": 8.651, "C6C8_dist": 9.496, "CNNC_torsion": 9.583, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[2.93]", "interBase_angle": 13.031, "planarity": 0.199, "simple_Shear": -1.156, "simple_Stretch": -0.363, "simple_Buckle": 9.494, "simple_Propeller": 8.926, "bp_simpleParams": [ -1.156, -0.363, -0.335, 9.494, 8.926, -2.897 ], "bp_params": [ -1.110, -0.488, -0.335, 8.461, 9.910, -2.900 ], "frame": { "rmsd": null, "origin": [ 181.997, 153.316, 141.654 ], "x_axis": [ -0.369, -0.606, 0.705 ], "y_axis": [ -0.273, -0.654, -0.705 ], "z_axis": [ 0.888, -0.453, 0.076 ], "quaternion": [ -0.115, 0.550, -0.400, 0.724 ] } }, { "index": 486, "nt1": "///A/1000", "nt2": "///A/1009", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 165.670, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 41.896, "chi2": -167.847, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.666, "C1C1_dist": 10.682, "N1N9_dist": 8.670, "C6C8_dist": 9.338, "CNNC_torsion": -4.060, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.77],O6(carbonyl)*O4(carbonyl)[2.43],N2(amino)-O2(carbonyl)[2.98]", "unusual_base2base_hbonds": 1, "interBase_angle": 3.037, "planarity": 0.072, "simple_Shear": -0.815, "simple_Stretch": -0.571, "simple_Buckle": -2.930, "simple_Propeller": 0.800, "bp_simpleParams": [ -0.815, -0.571, 0.156, -2.930, 0.800, -11.631 ], "bp_params": [ -0.768, -0.633, 0.156, -2.983, 0.570, -11.627 ], "frame": { "rmsd": null, "origin": [ 185.601, 152.856, 143.819 ], "x_axis": [ -0.490, -0.847, 0.207 ], "y_axis": [ -0.079, -0.193, -0.978 ], "z_axis": [ 0.868, -0.495, 0.028 ], "quaternion": [ -0.294, 0.411, -0.563, 0.654 ] } }, { "index": 487, "nt1": "///A/1000", "nt2": "///A/2303", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": 165.670, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 86.118, "chi2": -125.978, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.220, "C1C1_dist": 9.627, "N1N9_dist": 9.115, "C6C8_dist": 11.241, "CNNC_torsion": 175.529, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.69],N2(amino)-N3[3.55]", "interBase_angle": 26.259, "planarity": 0.371, "simple_Shear": 6.377, "simple_Stretch": 4.531, "simple_Buckle": -25.658, "simple_Propeller": -5.588, "bp_simpleParams": [ 6.377, 4.531, -1.081, -25.658, -5.588, -145.649 ], "bp_params": [ -1.058, -7.751, -1.081, 13.553, 22.491, -146.040 ], "frame": { "rmsd": null, "origin": [ 187.532, 155.665, 141.443 ], "x_axis": [ -0.107, -0.574, -0.812 ], "y_axis": [ 0.309, 0.757, -0.576 ], "z_axis": [ 0.945, -0.312, 0.096 ], "quaternion": [ 0.661, -0.100, 0.665, -0.334 ] } }, { "index": 488, "nt1": "///A/1001", "nt2": "///A/1008", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.462, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 60.205, "chi2": -154.338, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 62.251, "C1C1_dist": 9.992, "N1N9_dist": 8.572, "C6C8_dist": 9.734, "CNNC_torsion": -5.017, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.72],O4(carbonyl)-N6(amino)[3.10]", "interBase_angle": 1.054, "planarity": 0.105, "simple_Shear": -0.016, "simple_Stretch": -0.186, "simple_Buckle": 0.439, "simple_Propeller": -0.959, "bp_simpleParams": [ -0.016, -0.186, 0.467, 0.439, -0.959, 8.942 ], "bp_params": [ -0.015, -0.186, 0.467, 0.445, -0.956, 8.943 ], "frame": { "rmsd": null, "origin": [ 187.865, 150.646, 145.112 ], "x_axis": [ -0.475, -0.766, -0.434 ], "y_axis": [ 0.218, 0.376, -0.901 ], "z_axis": [ 0.853, -0.522, -0.012 ], "quaternion": [ 0.472, -0.201, 0.682, -0.521 ] } }, { "index": 489, "nt1": "///A/1002", "nt2": "///A/1006", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -172.434, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 64.096, "chi2": -136.387, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 18.186, "C1C1_dist": 11.710, "N1N9_dist": 9.807, "C6C8_dist": 9.560, "CNNC_torsion": -141.395, "hbonds_num": 2, "hbonds_desc": "N1(imino)-OP2[3.71],N2(amino)-N7[3.07]", "interBase_angle": 16.016, "planarity": 0.310, "simple_Shear": 6.581, "simple_Stretch": 3.631, "simple_Buckle": 16.007, "simple_Propeller": -0.530, "bp_simpleParams": [ 6.581, 3.631, 1.467, 16.007, -0.530, -53.846 ], "bp_params": [ 7.062, -2.572, 1.467, 10.126, -12.409, -53.938 ], "frame": { "rmsd": null, "origin": [ 190.589, 148.569, 149.439 ], "x_axis": [ -0.304, 0.122, -0.945 ], "y_axis": [ 0.743, 0.651, -0.155 ], "z_axis": [ 0.596, -0.749, -0.289 ], "quaternion": [ 0.514, 0.289, 0.749, -0.302 ] } }, { "index": 490, "nt1": "///A/1019", "nt2": "///A/1228", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -142.204, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 129.608, "chi2": -155.207, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 121.323, "C1C1_dist": 5.922, "N1N9_dist": 7.627, "C6C8_dist": 10.222, "CNNC_torsion": 12.654, "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.92]", "interBase_angle": 30.427, "planarity": 0.391, "simple_Shear": 0.079, "simple_Stretch": 7.649, "simple_Buckle": -29.280, "simple_Propeller": -8.276, "bp_simpleParams": [ 0.079, 7.649, 2.040, -29.280, -8.276, 151.439 ], "bp_params": [ 0.561, 7.629, 2.040, -29.777, -6.258, 150.529 ], "frame": { "rmsd": null, "origin": [ 154.868, 162.582, 150.466 ], "x_axis": [ 0.145, 0.147, -0.979 ], "y_axis": [ 0.951, 0.252, 0.178 ], "z_axis": [ 0.273, -0.956, -0.103 ], "quaternion": [ 0.569, 0.499, 0.550, -0.353 ] } }, { "index": 491, "nt1": "///A/1020", "nt2": "///A/1036", "bp": "A-A", "name": "~Sheared", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -88.502, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 93.585, "chi2": 177.359, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 2.389, "C1C1_dist": 9.510, "N1N9_dist": 8.255, "C6C8_dist": 8.654, "CNNC_torsion": -167.797, "hbonds_num": 2, "hbonds_desc": "O4'-N6(amino)[3.35],N3-N6(amino)[3.10]", "interBase_angle": 59.146, "planarity": 0.703, "simple_Shear": 6.911, "simple_Stretch": 2.500, "simple_Buckle": -13.523, "simple_Propeller": 57.579, "bp_simpleParams": [ 6.911, 2.500, -0.592, -13.523, 57.579, -8.724 ], "bp_params": [ 6.197, -3.952, -0.592, 38.218, 45.140, -9.008 ], "frame": { "rmsd": null, "origin": [ 150.519, 154.745, 155.233 ], "x_axis": [ 0.563, 0.222, -0.796 ], "y_axis": [ 0.711, 0.362, 0.603 ], "z_axis": [ 0.422, -0.905, 0.046 ], "quaternion": [ 0.702, 0.537, 0.434, -0.174 ] } }, { "index": 492, "nt1": "///A/1021", "nt2": "///A/1034", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "tH.", "DSSR": "tM-.", "intra_chain": true, "chi1": 168.736, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 13.614, "chi2": -171.031, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 87.444, "C1C1_dist": 11.645, "N1N9_dist": 10.230, "C6C8_dist": 10.638, "CNNC_torsion": 75.951, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[3.81]", "interBase_angle": 20.756, "planarity": 0.246, "simple_Shear": -6.653, "simple_Stretch": 3.568, "simple_Buckle": 19.268, "simple_Propeller": 7.719, "bp_simpleParams": [ -6.653, 3.568, -0.085, 19.268, 7.719, -9.761 ], "bp_params": [ -7.303, -1.913, -0.085, 8.916, 18.744, -9.863 ], "frame": { "rmsd": null, "origin": [ 153.040, 148.269, 154.057 ], "x_axis": [ 0.772, -0.105, -0.627 ], "y_axis": [ 0.491, 0.725, 0.484 ], "z_axis": [ 0.404, -0.681, 0.611 ], "quaternion": [ 0.881, 0.330, 0.292, -0.169 ] } }, { "index": 493, "nt1": "///A/1021", "nt2": "///A/1035", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": 168.736, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 28.656, "chi2": -90.135, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 102.714, "C1C1_dist": 9.005, "N1N9_dist": 8.151, "C6C8_dist": 8.754, "CNNC_torsion": -83.096, "hbonds_num": 1, "hbonds_desc": "N7-N2(amino)[3.65]", "interBase_angle": 51.349, "planarity": 0.772, "simple_Shear": -7.572, "simple_Stretch": 3.303, "simple_Buckle": -49.067, "simple_Propeller": 15.139, "bp_simpleParams": [ -7.572, 3.303, 2.113, -49.067, 15.139, 7.633 ], "bp_params": [ -7.225, -4.004, 2.113, -41.361, -30.430, 7.438 ], "frame": { "rmsd": null, "origin": [ 152.696, 150.172, 153.705 ], "x_axis": [ 0.496, 0.137, -0.858 ], "y_axis": [ 0.783, 0.357, 0.509 ], "z_axis": [ 0.376, -0.924, 0.070 ], "quaternion": [ 0.693, 0.517, 0.445, -0.233 ] } }, { "index": 494, "nt1": "///A/1022", "nt2": "///A/1033", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 176.676, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.359, "chi2": -162.721, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.416, "C1C1_dist": 10.760, "N1N9_dist": 8.984, "C6C8_dist": 9.906, "CNNC_torsion": 2.119, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.97],N1(imino)-N3[2.93],N2(amino)-O2(carbonyl)[2.82]", "interBase_angle": 4.682, "planarity": 0.061, "simple_Shear": -0.235, "simple_Stretch": -0.105, "simple_Buckle": -4.639, "simple_Propeller": 0.631, "bp_simpleParams": [ -0.235, -0.105, -0.292, -4.639, 0.631, -0.071 ], "bp_params": [ -0.233, -0.110, -0.292, -4.650, 0.545, -0.070 ], "frame": { "rmsd": null, "origin": [ 154.960, 144.808, 154.963 ], "x_axis": [ 0.710, 0.704, 0.023 ], "y_axis": [ -0.458, 0.436, 0.775 ], "z_axis": [ 0.536, -0.560, 0.632 ], "quaternion": [ 0.833, 0.400, 0.154, 0.349 ] } }, { "index": 495, "nt1": "///A/1022", "nt2": "///A/1201", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": 176.676, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 111.746, "chi2": -131.847, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 138.347, "C1C1_dist": 6.181, "N1N9_dist": 7.898, "C6C8_dist": 10.589, "CNNC_torsion": -38.976, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.70],N2(amino)-N3[3.81]", "interBase_angle": 34.227, "planarity": 0.530, "simple_Shear": -0.288, "simple_Stretch": 7.972, "simple_Buckle": -13.912, "simple_Propeller": -31.272, "bp_simpleParams": [ -0.288, 7.972, 2.299, -13.912, -31.272, 148.277 ], "bp_params": [ -1.218, 7.884, 2.299, -9.910, -32.761, 149.387 ], "frame": { "rmsd": null, "origin": [ 152.002, 142.527, 152.784 ], "x_axis": [ 0.482, -0.084, -0.872 ], "y_axis": [ 0.606, 0.751, 0.263 ], "z_axis": [ 0.632, -0.655, 0.413 ], "quaternion": [ 0.813, 0.282, 0.462, -0.212 ] } }, { "index": 496, "nt1": "///A/1023", "nt2": "///A/1032", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.052, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.101, "chi2": -168.630, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.085, "C1C1_dist": 10.648, "N1N9_dist": 8.897, "C6C8_dist": 9.831, "CNNC_torsion": 6.587, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 5.105, "planarity": 0.096, "simple_Shear": -0.152, "simple_Stretch": -0.189, "simple_Buckle": -0.894, "simple_Propeller": 5.026, "bp_simpleParams": [ -0.152, -0.189, -0.382, -0.894, 5.026, -0.150 ], "bp_params": [ -0.150, -0.190, -0.382, -0.949, 5.016, -0.150 ], "frame": { "rmsd": null, "origin": [ 157.809, 142.295, 155.306 ], "x_axis": [ 0.290, 0.880, 0.376 ], "y_axis": [ -0.763, -0.024, 0.646 ], "z_axis": [ 0.577, -0.474, 0.665 ], "quaternion": [ 0.695, 0.403, 0.073, 0.591 ] } }, { "index": 497, "nt1": "///A/1023", "nt2": "///A/1047", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -168.052, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 88.846, "chi2": -160.699, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.960, "C1C1_dist": 8.308, "N1N9_dist": 7.999, "C6C8_dist": 10.161, "CNNC_torsion": -173.936, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.18],N2(amino)-N3[3.42]", "interBase_angle": 38.672, "planarity": 0.495, "simple_Shear": 7.128, "simple_Stretch": 3.962, "simple_Buckle": -38.337, "simple_Propeller": 5.083, "bp_simpleParams": [ 7.128, 3.962, -2.085, -38.337, 5.083, -153.264 ], "bp_params": [ -2.653, -7.711, -2.085, 31.804, 22.002, -152.697 ], "frame": { "rmsd": null, "origin": [ 155.261, 138.936, 155.323 ], "x_axis": [ -0.573, 0.085, 0.815 ], "y_axis": [ -0.600, -0.722, -0.345 ], "z_axis": [ 0.559, -0.687, 0.465 ], "quaternion": [ 0.206, 0.414, -0.311, 0.831 ] } }, { "index": 498, "nt1": "///A/1024", "nt2": "///A/1031", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.322, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.726, "chi2": 175.705, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.518, "C1C1_dist": 10.779, "N1N9_dist": 8.927, "C6C8_dist": 9.852, "CNNC_torsion": 11.552, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.81]", "interBase_angle": 19.425, "planarity": 0.276, "simple_Shear": -0.152, "simple_Stretch": -0.129, "simple_Buckle": -7.792, "simple_Propeller": 17.794, "bp_simpleParams": [ -0.152, -0.129, 0.063, -7.792, 17.794, 1.249 ], "bp_params": [ -0.150, -0.132, 0.063, -8.027, 17.689, 1.261 ], "frame": { "rmsd": null, "origin": [ 161.357, 142.190, 156.977 ], "x_axis": [ -0.321, 0.779, 0.538 ], "y_axis": [ -0.794, -0.531, 0.296 ], "z_axis": [ 0.516, -0.332, 0.789 ], "quaternion": [ 0.484, 0.324, -0.011, 0.813 ] } }, { "index": 499, "nt1": "///A/1037", "nt2": "///A/1209", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.025, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.870, "chi2": 165.896, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.506, "C1C1_dist": 10.782, "N1N9_dist": 8.933, "C6C8_dist": 9.832, "CNNC_torsion": -2.002, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 1.457, "planarity": 0.021, "simple_Shear": 0.197, "simple_Stretch": -0.172, "simple_Buckle": 0.660, "simple_Propeller": -1.299, "bp_simpleParams": [ 0.197, -0.172, -0.069, 0.660, -1.299, -0.404 ], "bp_params": [ 0.194, -0.175, -0.069, 0.641, -1.308, -0.404 ], "frame": { "rmsd": null, "origin": [ 132.726, 153.455, 155.126 ], "x_axis": [ 0.091, -0.618, -0.781 ], "y_axis": [ 0.947, 0.296, -0.124 ], "z_axis": [ 0.307, -0.728, 0.612 ], "quaternion": [ 0.707, 0.214, 0.385, -0.554 ] } }, { "index": 500, "nt1": "///A/1038", "nt2": "///A/1208", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.554, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.141, "chi2": 167.465, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.274, "C1C1_dist": 10.659, "N1N9_dist": 8.897, "C6C8_dist": 9.830, "CNNC_torsion": -0.692, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 5.537, "planarity": 0.127, "simple_Shear": 0.242, "simple_Stretch": -0.182, "simple_Buckle": 2.878, "simple_Propeller": 4.730, "bp_simpleParams": [ 0.242, -0.182, 0.310, 2.878, 4.730, 0.851 ], "bp_params": [ 0.238, -0.187, 0.310, 2.968, 4.674, 0.851 ], "frame": { "rmsd": null, "origin": [ 132.188, 150.119, 156.496 ], "x_axis": [ 0.524, -0.293, -0.800 ], "y_axis": [ 0.775, 0.554, 0.305 ], "z_axis": [ 0.353, -0.779, 0.517 ], "quaternion": [ 0.805, 0.337, 0.358, -0.332 ] } }, { "index": 501, "nt1": "///A/1039", "nt2": "///A/1207", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.605, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.559, "chi2": -158.523, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.906, "C1C1_dist": 10.771, "N1N9_dist": 8.945, "C6C8_dist": 9.832, "CNNC_torsion": 2.422, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 4.299, "planarity": 0.075, "simple_Shear": -0.219, "simple_Stretch": -0.177, "simple_Buckle": -3.978, "simple_Propeller": 1.630, "bp_simpleParams": [ -0.219, -0.177, -0.395, -3.978, 1.630, -1.277 ], "bp_params": [ -0.216, -0.181, -0.395, -4.006, 1.562, -1.276 ], "frame": { "rmsd": null, "origin": [ 131.850, 146.147, 156.828 ], "x_axis": [ 0.757, 0.165, -0.632 ], "y_axis": [ 0.501, 0.475, 0.724 ], "z_axis": [ 0.420, -0.865, 0.277 ], "quaternion": [ 0.792, 0.501, 0.332, -0.106 ] } }, { "index": 502, "nt1": "///A/1040", "nt2": "///A/1206", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -150.651, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.206, "chi2": -175.964, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.131, "C1C1_dist": 10.597, "N1N9_dist": 8.914, "C6C8_dist": 9.878, "CNNC_torsion": 1.756, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 6.386, "planarity": 0.115, "simple_Shear": 0.232, "simple_Stretch": -0.137, "simple_Buckle": 2.299, "simple_Propeller": 5.958, "bp_simpleParams": [ 0.232, -0.137, 0.211, 2.299, 5.958, 1.640 ], "bp_params": [ 0.230, -0.141, 0.211, 2.409, 5.914, 1.642 ], "frame": { "rmsd": null, "origin": [ 133.351, 142.776, 155.950 ], "x_axis": [ 0.873, 0.470, -0.127 ], "y_axis": [ -0.007, 0.273, 0.962 ], "z_axis": [ 0.487, -0.839, 0.242 ], "quaternion": [ 0.773, 0.583, 0.199, 0.154 ] } }, { "index": 503, "nt1": "///A/1042", "nt2": "///A/1205", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.220, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.829, "chi2": -166.891, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.155, "C1C1_dist": 10.441, "N1N9_dist": 8.773, "C6C8_dist": 9.752, "CNNC_torsion": 7.866, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.98],N1-N3(imino)[2.83]", "interBase_angle": 4.227, "planarity": 0.170, "simple_Shear": 0.098, "simple_Stretch": -0.220, "simple_Buckle": -4.219, "simple_Propeller": 0.261, "bp_simpleParams": [ 0.098, -0.220, -0.890, -4.219, 0.261, 1.285 ], "bp_params": [ 0.094, -0.221, -0.890, -4.215, 0.322, 1.285 ], "frame": { "rmsd": null, "origin": [ 135.807, 139.940, 153.798 ], "x_axis": [ 0.522, 0.684, 0.510 ], "y_axis": [ -0.274, -0.432, 0.859 ], "z_axis": [ 0.808, -0.588, -0.038 ], "quaternion": [ 0.513, 0.706, 0.145, 0.467 ] } }, { "index": 504, "nt1": "///A/1043", "nt2": "///A/1204", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.590, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.964, "chi2": -167.224, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.733, "C1C1_dist": 10.671, "N1N9_dist": 8.913, "C6C8_dist": 9.837, "CNNC_torsion": 9.113, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 8.929, "planarity": 0.140, "simple_Shear": -0.149, "simple_Stretch": -0.183, "simple_Buckle": -6.895, "simple_Propeller": 5.674, "bp_simpleParams": [ -0.149, -0.183, -0.636, -6.895, 5.674, -0.727 ], "bp_params": [ -0.147, -0.185, -0.636, -6.965, 5.588, -0.727 ], "frame": { "rmsd": null, "origin": [ 139.302, 138.714, 152.233 ], "x_axis": [ 0.302, 0.375, 0.877 ], "y_axis": [ -0.516, -0.709, 0.481 ], "z_axis": [ 0.802, -0.597, -0.020 ], "quaternion": [ 0.378, 0.713, -0.049, 0.589 ] } }, { "index": 505, "nt1": "///A/1044", "nt2": "///A/1203", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.250, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.835, "chi2": 161.943, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 43.865, "C1C1_dist": 11.017, "N1N9_dist": 9.005, "C6C8_dist": 9.806, "CNNC_torsion": 8.792, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.88],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.87]", "interBase_angle": 10.992, "planarity": 0.137, "simple_Shear": 0.211, "simple_Stretch": -0.184, "simple_Buckle": -0.762, "simple_Propeller": 10.966, "bp_simpleParams": [ 0.211, -0.184, -0.131, -0.762, 10.966, -3.983 ], "bp_params": [ 0.209, -0.187, -0.131, -0.597, 10.976, -4.001 ], "frame": { "rmsd": null, "origin": [ 142.922, 138.114, 151.905 ], "x_axis": [ -0.106, -0.125, 0.987 ], "y_axis": [ -0.592, -0.789, -0.163 ], "z_axis": [ 0.799, -0.602, 0.010 ], "quaternion": [ 0.169, 0.647, -0.277, 0.690 ] } }, { "index": 506, "nt1": "///A/1045", "nt2": "///A/1201", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": 176.328, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 31.958, "chi2": -131.847, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 12.340, "C1C1_dist": 10.231, "N1N9_dist": 7.614, "C6C8_dist": 6.743, "CNNC_torsion": -167.023, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.69],N3(imino)-N7[3.18]", "interBase_angle": 6.835, "planarity": 0.101, "simple_Shear": 4.311, "simple_Stretch": 1.088, "simple_Buckle": 6.791, "simple_Propeller": -0.776, "bp_simpleParams": [ 4.311, 1.088, 0.134, 6.791, -0.776, -88.807 ], "bp_params": [ 4.067, -1.797, 0.134, 4.874, -4.792, -88.805 ], "frame": { "rmsd": null, "origin": [ 147.853, 139.066, 152.060 ], "x_axis": [ -0.693, -0.688, 0.218 ], "y_axis": [ -0.037, -0.267, -0.963 ], "z_axis": [ 0.720, -0.675, 0.159 ], "quaternion": [ -0.223, 0.322, -0.563, 0.728 ] } }, { "index": 507, "nt1": "///A/1047", "nt2": "///A/1200", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -160.699, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 8.611, "chi2": -156.998, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 92.445, "C1C1_dist": 10.022, "N1N9_dist": 8.723, "C6C8_dist": 9.144, "CNNC_torsion": 97.422, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.96],N6(amino)-O2'(hydroxyl)[3.35],N6(amino)-N3[2.98]", "interBase_angle": 5.438, "planarity": 0.232, "simple_Shear": -7.166, "simple_Stretch": 2.385, "simple_Buckle": -4.398, "simple_Propeller": -3.198, "bp_simpleParams": [ -7.166, 2.385, -1.075, -4.398, -3.198, -5.430 ], "bp_params": [ -6.636, -3.608, -1.075, -0.667, -5.397, -5.436 ], "frame": { "rmsd": null, "origin": [ 150.800, 133.457, 153.051 ], "x_axis": [ -0.841, -0.467, -0.271 ], "y_axis": [ 0.326, -0.038, -0.945 ], "z_axis": [ 0.431, -0.883, 0.184 ], "quaternion": [ -0.276, 0.056, -0.636, 0.718 ] } }, { "index": 508, "nt1": "///A/1048", "nt2": "///A/1199", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.197, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.365, "chi2": -165.263, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.046, "C1C1_dist": 10.796, "N1N9_dist": 8.969, "C6C8_dist": 9.869, "CNNC_torsion": -4.759, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.81]", "interBase_angle": 4.293, "planarity": 0.050, "simple_Shear": -0.170, "simple_Stretch": -0.139, "simple_Buckle": -2.499, "simple_Propeller": -3.491, "bp_simpleParams": [ -0.170, -0.139, -0.082, -2.499, -3.491, -0.888 ], "bp_params": [ -0.168, -0.141, -0.082, -2.456, -3.521, -0.888 ], "frame": { "rmsd": null, "origin": [ 151.800, 129.583, 153.247 ], "x_axis": [ -0.200, -0.208, -0.957 ], "y_axis": [ 0.868, 0.416, -0.272 ], "z_axis": [ 0.455, -0.885, 0.097 ], "quaternion": [ 0.573, 0.268, 0.616, -0.469 ] } }, { "index": 509, "nt1": "///A/1049", "nt2": "///A/1056", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": 178.004, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 86.910, "chi2": -142.541, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.893, "C1C1_dist": 8.743, "N1N9_dist": 8.220, "C6C8_dist": 10.308, "CNNC_torsion": 157.498, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[2.74],N2(amino)-N3[3.13]", "interBase_angle": 35.915, "planarity": 0.428, "simple_Shear": 6.544, "simple_Stretch": 3.462, "simple_Buckle": 28.276, "simple_Propeller": -22.144, "bp_simpleParams": [ 6.544, 3.462, 1.821, 28.276, -22.144, -148.963 ], "bp_params": [ -2.004, -7.127, 1.821, -35.513, -5.355, -147.521 ], "frame": { "rmsd": null, "origin": [ 152.107, 126.285, 156.029 ], "x_axis": [ 0.883, 0.466, -0.051 ], "y_axis": [ 0.149, -0.175, 0.973 ], "z_axis": [ 0.444, -0.867, -0.224 ], "quaternion": [ 0.609, 0.755, 0.203, 0.130 ] } }, { "index": 510, "nt1": "///A/1049", "nt2": "///A/1198", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.004, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.482, "chi2": -171.170, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.780, "C1C1_dist": 10.624, "N1N9_dist": 8.917, "C6C8_dist": 9.886, "CNNC_torsion": -3.055, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.72]", "interBase_angle": 2.452, "planarity": 0.030, "simple_Shear": -0.207, "simple_Stretch": -0.127, "simple_Buckle": -1.811, "simple_Propeller": -1.652, "bp_simpleParams": [ -0.207, -0.127, -0.007, -1.811, -1.652, 1.993 ], "bp_params": [ -0.205, -0.130, -0.007, -1.785, -1.681, 1.993 ], "frame": { "rmsd": null, "origin": [ 151.177, 125.680, 152.322 ], "x_axis": [ 0.219, 0.027, -0.975 ], "y_axis": [ 0.882, 0.422, 0.210 ], "z_axis": [ 0.417, -0.906, 0.068 ], "quaternion": [ 0.654, 0.427, 0.533, -0.327 ] } }, { "index": 511, "nt1": "///A/1050", "nt2": "///A/1197", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.271, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.280, "chi2": 175.429, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.162, "C1C1_dist": 10.858, "N1N9_dist": 8.991, "C6C8_dist": 9.836, "CNNC_torsion": -8.043, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.90],O4(carbonyl)-N6(amino)[2.91]", "interBase_angle": 1.818, "planarity": 0.090, "simple_Shear": -0.071, "simple_Stretch": -0.102, "simple_Buckle": -1.562, "simple_Propeller": -0.931, "bp_simpleParams": [ -0.071, -0.102, 0.440, -1.562, -0.931, -3.623 ], "bp_params": [ -0.069, -0.102, 0.440, -1.551, -0.949, -3.623 ], "frame": { "rmsd": null, "origin": [ 151.077, 121.928, 152.359 ], "x_axis": [ 0.703, 0.301, -0.645 ], "y_axis": [ 0.566, 0.313, 0.763 ], "z_axis": [ 0.431, -0.901, 0.050 ], "quaternion": [ 0.719, 0.579, 0.374, -0.092 ] } }, { "index": 512, "nt1": "///A/1051", "nt2": "///A/1184", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 175.859, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 44.116, "chi2": -156.379, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.063, "C1C1_dist": 11.277, "N1N9_dist": 9.395, "C6C8_dist": 10.223, "CNNC_torsion": -10.083, "hbonds_num": 4, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.28],N3-N1(imino)[3.27],N3-N2(amino)[3.23],N4(amino)-O6(carbonyl)[3.14]", "interBase_angle": 12.473, "planarity": 0.182, "simple_Shear": -0.981, "simple_Stretch": 0.273, "simple_Buckle": -5.788, "simple_Propeller": -11.049, "bp_simpleParams": [ -0.981, 0.273, -0.104, -5.788, -11.049, -3.394 ], "bp_params": [ -1.003, 0.173, -0.104, -4.636, -11.579, -3.409 ], "frame": { "rmsd": null, "origin": [ 161.130, 119.784, 167.482 ], "x_axis": [ 0.707, 0.305, -0.638 ], "y_axis": [ -0.563, -0.303, -0.769 ], "z_axis": [ -0.428, 0.903, -0.042 ], "quaternion": [ 0.584, -0.716, 0.090, 0.372 ] } }, { "index": 513, "nt1": "///A/1052", "nt2": "///A/1183", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -145.563, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.239, "chi2": -154.091, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.750, "C1C1_dist": 10.528, "N1N9_dist": 8.844, "C6C8_dist": 9.804, "CNNC_torsion": 2.099, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 4.226, "planarity": 0.181, "simple_Shear": 0.182, "simple_Stretch": -0.235, "simple_Buckle": -4.154, "simple_Propeller": -0.780, "bp_simpleParams": [ 0.182, -0.235, -0.618, -4.154, -0.780, 0.760 ], "bp_params": [ 0.178, -0.238, -0.618, -4.165, -0.718, 0.759 ], "frame": { "rmsd": null, "origin": [ 160.398, 123.492, 168.558 ], "x_axis": [ 0.223, 0.014, -0.975 ], "y_axis": [ -0.872, -0.443, -0.206 ], "z_axis": [ -0.435, 0.896, -0.086 ], "quaternion": [ -0.416, 0.662, -0.324, -0.532 ] } }, { "index": 514, "nt1": "///A/1053", "nt2": "///A/1182", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.008, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.152, "chi2": -173.664, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.156, "C1C1_dist": 10.765, "N1N9_dist": 8.978, "C6C8_dist": 9.877, "CNNC_torsion": 7.326, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.84],N3-N1(imino)[2.94],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 14.001, "planarity": 0.176, "simple_Shear": 0.128, "simple_Stretch": -0.086, "simple_Buckle": 13.024, "simple_Propeller": 5.139, "bp_simpleParams": [ 0.128, -0.086, -0.439, 13.024, 5.139, -1.174 ], "bp_params": [ 0.127, -0.087, -0.439, 13.086, 4.980, -1.167 ], "frame": { "rmsd": null, "origin": [ 160.334, 126.872, 167.982 ], "x_axis": [ -0.236, -0.192, -0.953 ], "y_axis": [ -0.843, -0.448, 0.299 ], "z_axis": [ -0.484, 0.873, -0.057 ], "quaternion": [ 0.255, -0.563, 0.460, 0.638 ] } }, { "index": 515, "nt1": "///A/1055", "nt2": "///A/1199", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": -163.453, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 90.744, "chi2": -165.263, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 155.198, "C1C1_dist": 6.102, "N1N9_dist": 7.517, "C6C8_dist": 9.879, "CNNC_torsion": -11.410, "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.67]", "interBase_angle": 30.684, "planarity": 0.378, "simple_Shear": -1.129, "simple_Stretch": 7.035, "simple_Buckle": 28.959, "simple_Propeller": -10.144, "bp_simpleParams": [ -1.129, 7.035, -1.086, 28.959, -10.144, 144.753 ], "bp_params": [ -3.315, 6.307, -1.086, 30.684, -0.190, 143.535 ], "frame": { "rmsd": null, "origin": [ 152.220, 129.680, 156.735 ], "x_axis": [ 0.771, 0.321, -0.550 ], "y_axis": [ 0.568, 0.045, 0.822 ], "z_axis": [ 0.289, -0.946, -0.148 ], "quaternion": [ 0.646, 0.685, 0.325, -0.096 ] } }, { "index": 516, "nt1": "///A/1057", "nt2": "///A/1196", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -67.960, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 54.088, "chi2": -159.106, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.774, "C1C1_dist": 10.521, "N1N9_dist": 8.874, "C6C8_dist": 9.859, "CNNC_torsion": 0.676, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.71]", "interBase_angle": 2.985, "planarity": 0.081, "simple_Shear": -0.239, "simple_Stretch": -0.160, "simple_Buckle": -1.326, "simple_Propeller": -2.675, "bp_simpleParams": [ -0.239, -0.160, -0.350, -1.326, -2.675, 2.532 ], "bp_params": [ -0.236, -0.164, -0.350, -1.274, -2.700, 2.533 ], "frame": { "rmsd": null, "origin": [ 151.674, 118.996, 149.671 ], "x_axis": [ 0.765, 0.628, -0.144 ], "y_axis": [ 0.230, -0.058, 0.971 ], "z_axis": [ 0.602, -0.776, -0.189 ], "quaternion": [ 0.616, 0.709, 0.303, 0.161 ] } }, { "index": 517, "nt1": "///A/1059", "nt2": "///A/1195", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 173.340, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.162, "chi2": -166.182, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.138, "C1C1_dist": 10.544, "N1N9_dist": 8.818, "C6C8_dist": 9.732, "CNNC_torsion": -9.564, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.97],N1-N3(imino)[2.91]", "interBase_angle": 5.136, "planarity": 0.246, "simple_Shear": 0.076, "simple_Stretch": -0.287, "simple_Buckle": 4.266, "simple_Propeller": 2.859, "bp_simpleParams": [ 0.076, -0.287, 1.250, 4.266, 2.859, -0.500 ], "bp_params": [ 0.072, -0.288, 1.250, 4.304, 2.802, -0.499 ], "frame": { "rmsd": null, "origin": [ 153.763, 116.920, 148.101 ], "x_axis": [ 0.751, 0.608, 0.257 ], "y_axis": [ -0.247, -0.102, 0.964 ], "z_axis": [ 0.613, -0.787, 0.073 ], "quaternion": [ 0.656, 0.667, 0.136, 0.326 ] } }, { "index": 518, "nt1": "///A/1060", "nt2": "///A/1194", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.981, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.994, "chi2": 164.785, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.730, "C1C1_dist": 10.489, "N1N9_dist": 8.693, "C6C8_dist": 9.589, "CNNC_torsion": -11.618, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.83],O4(carbonyl)-N6(amino)[2.87]", "interBase_angle": 3.961, "planarity": 0.285, "simple_Shear": -0.014, "simple_Stretch": -0.419, "simple_Buckle": 3.842, "simple_Propeller": 0.961, "bp_simpleParams": [ -0.014, -0.419, 1.173, 3.842, 0.961, -1.483 ], "bp_params": [ -0.011, -0.419, 1.173, 3.836, 0.986, -1.482 ], "frame": { "rmsd": null, "origin": [ 156.785, 115.040, 146.351 ], "x_axis": [ 0.413, 0.463, 0.784 ], "y_axis": [ -0.658, -0.443, 0.608 ], "z_axis": [ 0.629, -0.768, 0.122 ], "quaternion": [ 0.522, 0.659, -0.074, 0.537 ] } }, { "index": 519, "nt1": "///A/1061", "nt2": "///A/1193", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.439, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.720, "chi2": -160.530, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.565, "C1C1_dist": 10.520, "N1N9_dist": 8.731, "C6C8_dist": 9.573, "CNNC_torsion": 11.975, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.87],N1-N3(imino)[2.87]", "interBase_angle": 13.391, "planarity": 0.300, "simple_Shear": 0.252, "simple_Stretch": -0.424, "simple_Buckle": -13.131, "simple_Propeller": -2.625, "bp_simpleParams": [ 0.252, -0.424, -1.599, -13.131, -2.625, -3.369 ], "bp_params": [ 0.238, -0.432, -1.599, -13.208, -2.205, -3.348 ], "frame": { "rmsd": null, "origin": [ 160.734, 113.507, 145.605 ], "x_axis": [ -0.293, 0.468, 0.834 ], "y_axis": [ -0.478, -0.827, 0.296 ], "z_axis": [ 0.828, -0.312, 0.466 ], "quaternion": [ 0.294, 0.517, -0.005, 0.804 ] } }, { "index": 520, "nt1": "///A/1062", "nt2": "///A/1192", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.987, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.499, "chi2": -140.576, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.414, "C1C1_dist": 10.221, "N1N9_dist": 8.677, "C6C8_dist": 9.700, "CNNC_torsion": 7.324, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.64],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 1.884, "planarity": 0.276, "simple_Shear": 0.206, "simple_Stretch": -0.384, "simple_Buckle": -0.356, "simple_Propeller": -1.850, "bp_simpleParams": [ 0.206, -0.384, -1.176, -0.356, -1.850, 4.287 ], "bp_params": [ 0.200, -0.387, -1.176, -0.385, -1.844, 4.288 ], "frame": { "rmsd": null, "origin": [ 163.861, 113.544, 146.621 ], "x_axis": [ -0.569, 0.114, 0.814 ], "y_axis": [ -0.365, -0.923, -0.126 ], "z_axis": [ 0.737, -0.369, 0.567 ], "quaternion": [ 0.137, 0.443, -0.141, 0.874 ] } }, { "index": 521, "nt1": "///A/1062", "nt2": "///A/1193", "bp": "C-U", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.987, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 66.910, "chi2": -160.530, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 69.529, "C1C1_dist": 7.965, "N1N9_dist": 6.868, "C6C8_dist": 8.382, "CNNC_torsion": -7.732, "hbonds_num": 2, "hbonds_desc": "N3-N3(imino)[3.36],N4(amino)-O4(carbonyl)[3.58]", "interBase_angle": 13.614, "planarity": 0.356, "simple_Shear": -0.366, "simple_Stretch": -1.608, "simple_Buckle": -11.924, "simple_Propeller": 6.571, "bp_simpleParams": [ -0.366, -1.608, 1.676, -11.924, 6.571, 25.592 ], "bp_params": [ -0.300, -1.622, 1.676, -12.189, 6.064, 25.487 ], "frame": { "rmsd": null, "origin": [ 162.385, 113.487, 146.168 ], "x_axis": [ -0.439, 0.258, 0.861 ], "y_axis": [ -0.381, -0.921, 0.082 ], "z_axis": [ 0.814, -0.292, 0.503 ], "quaternion": [ 0.189, 0.495, -0.062, 0.846 ] } }, { "index": 522, "nt1": "///A/1063", "nt2": "///A/1191", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.625, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.614, "chi2": -161.755, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.761, "C1C1_dist": 10.436, "N1N9_dist": 8.817, "C6C8_dist": 9.800, "CNNC_torsion": 4.603, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 3.075, "planarity": 0.202, "simple_Shear": -0.107, "simple_Stretch": -0.254, "simple_Buckle": 2.637, "simple_Propeller": -1.581, "bp_simpleParams": [ -0.107, -0.254, -0.776, 2.637, -1.581, 1.600 ], "bp_params": [ -0.106, -0.255, -0.776, 2.648, -1.563, 1.600 ], "frame": { "rmsd": null, "origin": [ 166.561, 113.182, 149.429 ], "x_axis": [ -0.819, -0.206, 0.535 ], "y_axis": [ -0.115, -0.855, -0.506 ], "z_axis": [ 0.562, -0.476, 0.676 ], "quaternion": [ -0.025, 0.300, -0.268, 0.915 ] } }, { "index": 523, "nt1": "///A/1064", "nt2": "///A/1190", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.371, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.449, "chi2": -168.567, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.403, "C1C1_dist": 10.579, "N1N9_dist": 8.843, "C6C8_dist": 9.742, "CNNC_torsion": 3.892, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.90],O4(carbonyl)-N6(amino)[2.93]", "interBase_angle": 12.012, "planarity": 0.229, "simple_Shear": -0.107, "simple_Stretch": -0.236, "simple_Buckle": 9.831, "simple_Propeller": -6.903, "bp_simpleParams": [ -0.107, -0.236, -1.215, 9.831, -6.903, -0.475 ], "bp_params": [ -0.103, -0.238, -1.215, 9.959, -6.716, -0.474 ], "frame": { "rmsd": null, "origin": [ 167.960, 112.986, 152.393 ], "x_axis": [ -0.757, -0.637, 0.144 ], "y_axis": [ 0.397, -0.625, -0.672 ], "z_axis": [ 0.518, -0.452, 0.726 ], "quaternion": [ -0.293, 0.188, -0.319, 0.882 ] } }, { "index": 524, "nt1": "///A/1064", "nt2": "///A/1191", "bp": "U-C", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.371, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 72.059, "chi2": -161.755, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 72.512, "C1C1_dist": 7.415, "N1N9_dist": 6.522, "C6C8_dist": 8.218, "CNNC_torsion": -13.313, "hbonds_num": 1, "hbonds_desc": "N3(imino)-N3[3.33]", "interBase_angle": 9.987, "planarity": 0.392, "simple_Shear": -0.143, "simple_Stretch": -1.636, "simple_Buckle": 9.977, "simple_Propeller": -0.450, "bp_simpleParams": [ -0.143, -1.636, 2.000, 9.977, -0.450, 34.559 ], "bp_params": [ -0.119, -1.638, 2.000, 9.982, -0.303, 34.436 ], "frame": { "rmsd": null, "origin": [ 167.179, 113.122, 150.840 ], "x_axis": [ -0.828, -0.431, 0.359 ], "y_axis": [ 0.158, -0.793, -0.588 ], "z_axis": [ 0.539, -0.430, 0.725 ], "quaternion": [ -0.161, 0.245, -0.278, 0.915 ] } }, { "index": 525, "nt1": "///A/1065", "nt2": "///A/1188", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -160.945, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 31.786, "chi2": -99.065, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 8.761, "C1C1_dist": 11.460, "N1N9_dist": 8.789, "C6C8_dist": 8.026, "CNNC_torsion": 88.286, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.49],N3(imino)*N6(amino)[2.81]", "unusual_base2base_hbonds": 1, "interBase_angle": 26.816, "planarity": 0.393, "simple_Shear": 2.594, "simple_Stretch": 0.600, "simple_Buckle": -4.305, "simple_Propeller": -26.469, "bp_simpleParams": [ 2.594, 0.600, -1.573, -4.305, -26.469, -73.780 ], "bp_params": [ 2.641, -0.343, -1.573, -13.210, -23.337, -74.569 ], "frame": { "rmsd": null, "origin": [ 169.663, 112.961, 156.735 ], "x_axis": [ -0.042, -0.894, -0.446 ], "y_axis": [ 0.934, 0.123, -0.334 ], "z_axis": [ 0.354, -0.430, 0.830 ], "quaternion": [ 0.691, 0.035, 0.289, -0.661 ] } }, { "index": 526, "nt1": "///A/1067", "nt2": "///A/1187", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -71.699, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 4.333, "chi2": -88.842, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 38.765, "C1C1_dist": 10.594, "N1N9_dist": 8.050, "C6C8_dist": 7.454, "CNNC_torsion": -159.785, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.34]", "interBase_angle": 25.934, "planarity": 0.290, "simple_Shear": -4.029, "simple_Stretch": 0.540, "simple_Buckle": -11.768, "simple_Propeller": -23.111, "bp_simpleParams": [ -4.029, 0.540, -0.507, -11.768, -23.111, -72.066 ], "bp_params": [ -3.733, -1.611, -0.507, 1.913, -25.864, -73.464 ], "frame": { "rmsd": null, "origin": [ 174.163, 112.047, 159.387 ], "x_axis": [ -0.301, 0.010, 0.954 ], "y_axis": [ 0.848, 0.461, 0.263 ], "z_axis": [ -0.437, 0.887, -0.147 ], "quaternion": [ 0.503, -0.310, -0.691, -0.416 ] } }, { "index": 527, "nt1": "///A/1070", "nt2": "///A/1186", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -145.266, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.168, "chi2": -165.952, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.911, "C1C1_dist": 10.735, "N1N9_dist": 8.962, "C6C8_dist": 9.876, "CNNC_torsion": -10.109, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.83]", "interBase_angle": 14.613, "planarity": 0.216, "simple_Shear": -0.146, "simple_Stretch": -0.104, "simple_Buckle": 9.739, "simple_Propeller": -10.895, "bp_simpleParams": [ -0.146, -0.104, 0.024, 9.739, -10.895, 0.211 ], "bp_params": [ -0.145, -0.106, 0.024, 9.885, -10.763, 0.211 ], "frame": { "rmsd": null, "origin": [ 170.711, 117.717, 163.517 ], "x_axis": [ 0.624, 0.117, 0.773 ], "y_axis": [ 0.643, 0.486, -0.592 ], "z_axis": [ -0.444, 0.866, 0.228 ], "quaternion": [ 0.764, -0.477, -0.398, -0.172 ] } }, { "index": 528, "nt1": "///A/1071", "nt2": "///A/1185", "bp": "G+G", "name": "--", "Saenger": "03-III", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -150.732, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 30.237, "chi2": -167.069, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 25.909, "C1C1_dist": 13.766, "N1N9_dist": 11.248, "C6C8_dist": 11.372, "CNNC_torsion": 137.185, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N1(imino)[3.41],N1(imino)-O6(carbonyl)[3.03]", "interBase_angle": 24.896, "planarity": 0.332, "simple_Shear": -1.553, "simple_Stretch": 1.619, "simple_Buckle": -10.903, "simple_Propeller": -22.382, "bp_simpleParams": [ -1.553, 1.619, 0.608, -10.903, -22.382, -174.907 ], "bp_params": [ 1.372, 1.775, 0.608, -23.775, 7.389, -174.806 ], "frame": { "rmsd": null, "origin": [ 169.243, 120.377, 165.677 ], "x_axis": [ 0.279, 0.398, -0.874 ], "y_axis": [ 0.816, 0.381, 0.434 ], "z_axis": [ 0.506, -0.835, -0.219 ], "quaternion": [ 0.600, 0.529, 0.575, -0.174 ] } }, { "index": 529, "nt1": "///A/1075", "nt2": "///A/1171", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -160.121, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 7.971, "chi2": -176.475, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 96.032, "C1C1_dist": 9.388, "N1N9_dist": 8.185, "C6C8_dist": 8.625, "CNNC_torsion": -113.717, "hbonds_num": 4, "hbonds_desc": "OP2-N2(amino)[3.38],N7-N2(amino)[2.74],N6(amino)-O2'(hydroxyl)[2.95],N6(amino)-N3[2.90]", "interBase_angle": 3.596, "planarity": 0.144, "simple_Shear": -7.501, "simple_Stretch": 2.235, "simple_Buckle": 2.922, "simple_Propeller": 2.097, "bp_simpleParams": [ -7.501, 2.235, 0.636, 2.922, 2.097, -3.681 ], "bp_params": [ -6.556, -4.276, 0.636, 0.291, 3.585, -3.682 ], "frame": { "rmsd": null, "origin": [ 191.236, 124.208, 154.917 ], "x_axis": [ -0.779, -0.540, 0.317 ], "y_axis": [ -0.594, 0.475, -0.649 ], "z_axis": [ 0.200, -0.694, -0.691 ], "quaternion": [ -0.034, -0.330, 0.858, -0.391 ] } }, { "index": 530, "nt1": "///A/1076", "nt2": "///A/1170", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 173.464, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.985, "chi2": -174.620, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.809, "C1C1_dist": 10.577, "N1N9_dist": 8.840, "C6C8_dist": 9.812, "CNNC_torsion": 0.725, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.83],N2(amino)-O2(carbonyl)[2.66]", "interBase_angle": 5.599, "planarity": 0.072, "simple_Shear": -0.216, "simple_Stretch": -0.201, "simple_Buckle": 3.773, "simple_Propeller": 4.137, "bp_simpleParams": [ -0.216, -0.201, 0.270, 3.773, 4.137, 1.778 ], "bp_params": [ -0.212, -0.205, 0.270, 3.704, 4.198, 1.778 ], "frame": { "rmsd": null, "origin": [ 190.911, 121.196, 153.532 ], "x_axis": [ -0.918, 0.117, -0.378 ], "y_axis": [ 0.354, 0.669, -0.654 ], "z_axis": [ 0.176, -0.734, -0.656 ], "quaternion": [ 0.154, 0.131, 0.900, -0.385 ] } }, { "index": 531, "nt1": "///A/1077", "nt2": "///A/1169", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.382, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.857, "chi2": -164.410, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.132, "C1C1_dist": 10.389, "N1N9_dist": 8.782, "C6C8_dist": 9.783, "CNNC_torsion": 0.148, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.69]", "interBase_angle": 15.227, "planarity": 0.195, "simple_Shear": -0.228, "simple_Stretch": -0.215, "simple_Buckle": -12.157, "simple_Propeller": -9.170, "bp_simpleParams": [ -0.228, -0.215, -0.857, -12.157, -9.170, 4.085 ], "bp_params": [ -0.225, -0.219, -0.857, -12.034, -9.330, 4.076 ], "frame": { "rmsd": null, "origin": [ 189.539, 117.670, 152.158 ], "x_axis": [ -0.540, 0.608, -0.582 ], "y_axis": [ 0.837, 0.316, -0.446 ], "z_axis": [ -0.087, -0.728, -0.680 ], "quaternion": [ 0.155, 0.454, 0.796, -0.369 ] } }, { "index": 532, "nt1": "///A/1078", "nt2": "///A/1168", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 179.905, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.559, "chi2": 162.406, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 41.185, "C1C1_dist": 12.276, "N1N9_dist": 10.517, "C6C8_dist": 11.183, "CNNC_torsion": 7.510, "hbonds_num": 1, "hbonds_desc": "N1*O6(carbonyl)[2.84]", "interBase_angle": 25.867, "planarity": 0.383, "simple_Shear": 1.922, "simple_Stretch": 1.792, "simple_Buckle": -25.665, "simple_Propeller": -3.223, "bp_simpleParams": [ 1.922, 1.792, -0.019, -25.665, -3.223, -4.407 ], "bp_params": [ 2.238, 1.377, -0.019, -25.792, 1.965, -4.297 ], "frame": { "rmsd": null, "origin": [ 187.345, 114.854, 150.313 ], "x_axis": [ 0.188, 0.673, -0.715 ], "y_axis": [ 0.981, -0.166, 0.102 ], "z_axis": [ -0.050, -0.721, -0.691 ], "quaternion": [ 0.288, 0.715, 0.578, -0.267 ] } }, { "index": 533, "nt1": "///A/1079", "nt2": "///A/2779", "bp": "U+A", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -141.831, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 30.240, "chi2": -136.080, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 39.503, "C1C1_dist": 12.207, "N1N9_dist": 9.838, "C6C8_dist": 9.390, "CNNC_torsion": 62.977, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N6(amino)[3.24]", "interBase_angle": 68.820, "planarity": 0.915, "simple_Shear": -4.116, "simple_Stretch": 1.711, "simple_Buckle": -68.250, "simple_Propeller": -8.838, "bp_simpleParams": [ -4.116, 1.711, -1.004, -68.250, -8.838, 175.168 ], "bp_params": [ 0.060, -4.457, -1.004, 34.253, -59.690, 175.550 ], "frame": { "rmsd": null, "origin": [ 190.621, 100.256, 153.792 ], "x_axis": [ -0.742, -0.670, -0.029 ], "y_axis": [ 0.670, -0.739, -0.075 ], "z_axis": [ 0.029, -0.075, 0.997 ], "quaternion": [ -0.359, 0.000, -0.040, 0.932 ] } }, { "index": 534, "nt1": "///A/1080", "nt2": "///A/1167", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -151.618, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.512, "chi2": -156.643, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.783, "C1C1_dist": 10.621, "N1N9_dist": 8.718, "C6C8_dist": 9.462, "CNNC_torsion": 17.781, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.73],N1(imino)-N3[2.86],N2(amino)-O2(carbonyl)[2.83]", "interBase_angle": 13.457, "planarity": 0.296, "simple_Shear": -0.031, "simple_Stretch": -0.560, "simple_Buckle": -13.175, "simple_Propeller": 2.742, "bp_simpleParams": [ -0.031, -0.560, -1.539, -13.175, 2.742, -6.962 ], "bp_params": [ -0.031, -0.560, -1.539, -13.177, 2.732, -6.918 ], "frame": { "rmsd": null, "origin": [ 181.941, 113.071, 148.615 ], "x_axis": [ 0.615, 0.480, -0.626 ], "y_axis": [ 0.675, -0.731, 0.101 ], "z_axis": [ -0.409, -0.484, -0.774 ], "quaternion": [ 0.166, 0.883, 0.327, -0.293 ] } }, { "index": 535, "nt1": "///A/1081", "nt2": "///A/1166", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -149.507, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 60.602, "chi2": -135.258, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.504, "C1C1_dist": 9.985, "N1N9_dist": 8.303, "C6C8_dist": 9.238, "CNNC_torsion": 3.707, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.32],N3(imino)*N1(imino)[2.56],O4(carbonyl)*O6(carbonyl)[2.54]", "unusual_base2base_hbonds": 2, "interBase_angle": 2.827, "planarity": 0.107, "simple_Shear": 0.765, "simple_Stretch": -0.745, "simple_Buckle": 2.678, "simple_Propeller": 0.907, "bp_simpleParams": [ 0.765, -0.745, -0.532, 2.678, 0.907, -0.543 ], "bp_params": [ 0.709, -0.798, -0.532, 2.736, 0.712, -0.543 ], "frame": { "rmsd": null, "origin": [ 180.991, 111.640, 145.872 ], "x_axis": [ 0.906, 0.123, -0.405 ], "y_axis": [ 0.309, -0.847, 0.433 ], "z_axis": [ -0.289, -0.518, -0.805 ], "quaternion": [ 0.252, 0.943, 0.114, -0.184 ] } }, { "index": 536, "nt1": "///A/1082", "nt2": "///A/1165", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 176.429, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 26.446, "chi2": -171.876, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 64.348, "C1C1_dist": 10.731, "N1N9_dist": 8.796, "C6C8_dist": 9.237, "CNNC_torsion": 12.657, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.80],N1(imino)-O2(carbonyl)[3.32]", "interBase_angle": 21.194, "planarity": 0.294, "simple_Shear": -3.421, "simple_Stretch": -0.000, "simple_Buckle": -21.078, "simple_Propeller": 2.209, "bp_simpleParams": [ -3.421, -0.000, -1.678, -21.078, 2.209, -18.821 ], "bp_params": [ -3.212, -1.179, -1.678, -20.542, -5.214, -18.544 ], "frame": { "rmsd": null, "origin": [ 181.061, 111.703, 141.024 ], "x_axis": [ 0.993, -0.029, 0.115 ], "y_axis": [ -0.080, -0.878, 0.471 ], "z_axis": [ 0.087, -0.477, -0.874 ], "quaternion": [ 0.245, 0.968, -0.028, 0.052 ] } }, { "index": 537, "nt1": "///A/1083", "nt2": "///A/1164", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.726, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.155, "chi2": -153.106, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.820, "C1C1_dist": 10.376, "N1N9_dist": 8.728, "C6C8_dist": 9.665, "CNNC_torsion": 12.484, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.72]", "interBase_angle": 11.003, "planarity": 0.280, "simple_Shear": -0.092, "simple_Stretch": -0.431, "simple_Buckle": -10.956, "simple_Propeller": 1.018, "bp_simpleParams": [ -0.092, -0.431, -1.488, -10.956, 1.018, 0.083 ], "bp_params": [ -0.089, -0.431, -1.488, -10.962, 0.952, 0.083 ], "frame": { "rmsd": null, "origin": [ 181.717, 110.842, 137.883 ], "x_axis": [ 0.772, -0.445, 0.453 ], "y_axis": [ -0.621, -0.677, 0.393 ], "z_axis": [ 0.132, -0.585, -0.800 ], "quaternion": [ 0.272, 0.901, -0.296, 0.162 ] } }, { "index": 538, "nt1": "///A/1083", "nt2": "///A/1165", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.726, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.308, "chi2": -171.876, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 79.212, "C1C1_dist": 8.604, "N1N9_dist": 7.535, "C6C8_dist": 8.883, "CNNC_torsion": -7.364, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.95],N1(imino)-O2(carbonyl)[2.51]", "interBase_angle": 22.474, "planarity": 0.643, "simple_Shear": -2.014, "simple_Stretch": -0.692, "simple_Buckle": -19.755, "simple_Propeller": 10.714, "bp_simpleParams": [ -2.014, -0.692, 1.598, -19.755, 10.714, 24.490 ], "bp_params": [ -1.825, -1.097, 1.598, -21.574, 6.295, 24.107 ], "frame": { "rmsd": null, "origin": [ 182.200, 111.091, 139.563 ], "x_axis": [ 0.891, -0.333, 0.308 ], "y_axis": [ -0.439, -0.804, 0.401 ], "z_axis": [ 0.114, -0.492, -0.863 ], "quaternion": [ 0.237, 0.943, -0.205, 0.112 ] } }, { "index": 539, "nt1": "///A/1084", "nt2": "///A/1085", "bp": "A+G", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": 179.618, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 116.209, "chi2": -105.253, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 39.097, "C1C1_dist": 6.776, "N1N9_dist": 6.342, "C6C8_dist": 6.479, "CNNC_torsion": -46.006, "hbonds_num": 1, "hbonds_desc": "N3*O6(carbonyl)[2.74]", "interBase_angle": 61.957, "planarity": 1.053, "simple_Shear": 0.089, "simple_Stretch": 6.693, "simple_Buckle": -1.997, "simple_Propeller": -61.925, "bp_simpleParams": [ 0.089, 6.693, 0.114, -1.997, -61.925, 32.174 ], "bp_params": [ 6.685, 0.343, 0.114, -61.918, -2.201, 27.788 ], "frame": { "rmsd": null, "origin": [ 184.274, 108.422, 137.378 ], "x_axis": [ -0.233, -0.661, 0.713 ], "y_axis": [ -0.771, -0.321, -0.550 ], "z_axis": [ 0.592, -0.678, -0.435 ], "quaternion": [ 0.052, 0.617, -0.580, 0.529 ] } }, { "index": 540, "nt1": "///A/1084", "nt2": "///A/1164", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": 179.618, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 129.274, "chi2": -153.106, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.318, "C1C1_dist": 7.290, "N1N9_dist": 7.250, "C6C8_dist": 9.019, "CNNC_torsion": 19.189, "hbonds_num": 1, "hbonds_desc": "N3-N4(amino)[3.39]", "interBase_angle": 16.429, "planarity": 0.386, "simple_Shear": 4.283, "simple_Stretch": 2.285, "simple_Buckle": -14.288, "simple_Propeller": 8.109, "bp_simpleParams": [ 4.283, 2.285, 1.143, -14.288, 8.109, 76.221 ], "bp_params": [ 4.828, -0.508, 1.143, -7.310, 14.713, 76.569 ], "frame": { "rmsd": null, "origin": [ 182.556, 108.179, 138.518 ], "x_axis": [ 0.211, -0.732, 0.648 ], "y_axis": [ -0.966, -0.258, 0.022 ], "z_axis": [ 0.151, -0.631, -0.761 ], "quaternion": [ 0.219, 0.747, -0.568, 0.268 ] } }, { "index": 541, "nt1": "///A/1086", "nt2": "///A/1162", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -121.296, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 78.486, "chi2": -114.004, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.630, "C1C1_dist": 7.143, "N1N9_dist": 6.064, "C6C8_dist": 7.482, "CNNC_torsion": 13.523, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N3[2.87],O4(carbonyl)-N4(amino)[2.93]", "interBase_angle": 1.635, "planarity": 0.420, "simple_Shear": 1.705, "simple_Stretch": -2.566, "simple_Buckle": 0.813, "simple_Propeller": -1.418, "bp_simpleParams": [ 1.705, -2.566, -1.872, 0.813, -1.418, 20.835 ], "bp_params": [ 1.240, -2.821, -1.872, 0.557, -1.537, 20.837 ], "frame": { "rmsd": null, "origin": [ 188.307, 104.805, 134.638 ], "x_axis": [ -0.384, -0.640, 0.666 ], "y_axis": [ -0.286, -0.604, -0.744 ], "z_axis": [ 0.878, -0.476, 0.049 ], "quaternion": [ -0.124, 0.541, -0.428, 0.713 ] } }, { "index": 542, "nt1": "///A/1087", "nt2": "///A/1161", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -163.171, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 127.035, "chi2": -98.532, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 60.883, "C1C1_dist": 7.526, "N1N9_dist": 7.723, "C6C8_dist": 9.595, "CNNC_torsion": 24.568, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.42],O2(carbonyl)*N1[2.55]", "unusual_base2base_hbonds": 1, "interBase_angle": 30.600, "planarity": 0.409, "simple_Shear": 3.537, "simple_Stretch": 3.145, "simple_Buckle": -29.922, "simple_Propeller": 6.410, "bp_simpleParams": [ 3.537, 3.145, 0.170, -29.922, 6.410, 83.162 ], "bp_params": [ 4.577, 1.204, 0.170, -23.868, 19.150, 82.721 ], "frame": { "rmsd": null, "origin": [ 187.873, 99.129, 133.829 ], "x_axis": [ -0.787, -0.584, 0.201 ], "y_axis": [ -0.240, -0.010, -0.971 ], "z_axis": [ 0.569, -0.812, -0.133 ], "quaternion": [ 0.133, -0.298, 0.691, -0.645 ] } }, { "index": 543, "nt1": "///A/1088", "nt2": "///A/1159", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.117, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.116, "chi2": -153.748, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.773, "C1C1_dist": 9.825, "N1N9_dist": 8.059, "C6C8_dist": 8.788, "CNNC_torsion": 5.681, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.64],O6(carbonyl)*O4(carbonyl)[2.36],N2(amino)-O2(carbonyl)[2.92]", "unusual_base2base_hbonds": 1, "interBase_angle": 27.976, "planarity": 0.381, "simple_Shear": -0.952, "simple_Stretch": -1.122, "simple_Buckle": -25.271, "simple_Propeller": -12.003, "bp_simpleParams": [ -0.952, -1.122, -1.819, -25.271, -12.003, -5.257 ], "bp_params": [ -0.859, -1.195, -1.819, -24.299, -13.864, -5.179 ], "frame": { "rmsd": null, "origin": [ 190.719, 93.874, 134.597 ], "x_axis": [ -0.926, 0.344, -0.156 ], "y_axis": [ 0.201, 0.099, -0.975 ], "z_axis": [ -0.320, -0.934, -0.161 ], "quaternion": [ -0.055, 0.185, 0.739, -0.645 ] } }, { "index": 544, "nt1": "///A/1089", "nt2": "///A/1158", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.199, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.233, "chi2": -141.410, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.218, "C1C1_dist": 10.177, "N1N9_dist": 8.495, "C6C8_dist": 9.433, "CNNC_torsion": 12.803, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 13.220, "planarity": 0.478, "simple_Shear": 0.143, "simple_Stretch": -0.637, "simple_Buckle": -13.213, "simple_Propeller": 0.414, "bp_simpleParams": [ 0.143, -0.637, -1.515, -13.213, 0.414, 1.114 ], "bp_params": [ 0.137, -0.639, -1.515, -13.209, 0.538, 1.106 ], "frame": { "rmsd": null, "origin": [ 189.662, 90.540, 134.831 ], "x_axis": [ -0.694, 0.407, -0.595 ], "y_axis": [ 0.671, 0.063, -0.739 ], "z_axis": [ -0.263, -0.911, -0.317 ], "quaternion": [ 0.115, 0.374, 0.720, -0.573 ] } }, { "index": 545, "nt1": "///A/1089", "nt2": "///A/1159", "bp": "C-U", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.199, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.085, "chi2": -153.748, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 75.809, "C1C1_dist": 7.637, "N1N9_dist": 6.614, "C6C8_dist": 8.136, "CNNC_torsion": -17.156, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)*O2(carbonyl)[2.90],N3-N3(imino)[3.37]", "unusual_base2base_hbonds": 1, "interBase_angle": 29.744, "planarity": 0.433, "simple_Shear": -1.102, "simple_Stretch": -1.476, "simple_Buckle": -29.742, "simple_Propeller": 0.363, "bp_simpleParams": [ -1.102, -1.476, 1.742, -29.742, 0.363, 27.539 ], "bp_params": [ -0.929, -1.590, 1.742, -29.592, -3.002, 26.668 ], "frame": { "rmsd": null, "origin": [ 189.875, 92.235, 134.533 ], "x_axis": [ -0.823, 0.388, -0.416 ], "y_axis": [ 0.458, 0.018, -0.889 ], "z_axis": [ -0.337, -0.922, -0.193 ], "quaternion": [ 0.028, 0.297, 0.713, -0.635 ] } }, { "index": 546, "nt1": "///A/1090", "nt2": "///A/1158", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -164.476, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 121.644, "chi2": -141.410, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.621, "C1C1_dist": 7.985, "N1N9_dist": 7.794, "C6C8_dist": 9.392, "CNNC_torsion": 13.959, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.03]", "interBase_angle": 17.182, "planarity": 0.447, "simple_Shear": 4.422, "simple_Stretch": 2.025, "simple_Buckle": -15.616, "simple_Propeller": 7.168, "bp_simpleParams": [ 4.422, 2.025, 1.486, -15.616, 7.168, 65.285 ], "bp_params": [ 4.834, -0.537, 1.486, -9.735, 14.159, 65.497 ], "frame": { "rmsd": null, "origin": [ 188.753, 90.268, 132.085 ], "x_axis": [ -0.211, 0.430, -0.878 ], "y_axis": [ 0.935, -0.173, -0.309 ], "z_axis": [ -0.285, -0.886, -0.365 ], "quaternion": [ 0.250, 0.576, 0.592, -0.505 ] } }, { "index": 547, "nt1": "///A/1095", "nt2": "///A/2780", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.475, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.502, "chi2": 74.258, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 61.038, "C1C1_dist": 9.603, "N1N9_dist": 8.246, "C6C8_dist": 9.271, "CNNC_torsion": -24.936, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.62],N3-N1(imino)[3.16],N4(amino)-O6(carbonyl)[3.91]", "interBase_angle": 69.975, "planarity": 0.761, "simple_Shear": 1.072, "simple_Stretch": 0.651, "simple_Buckle": 59.294, "simple_Propeller": -37.158, "bp_simpleParams": [ 1.072, 0.651, -0.488, 59.294, -37.158, 20.691 ], "bp_params": [ 1.087, 0.625, -0.488, 59.480, -36.860, 19.264 ], "frame": { "rmsd": null, "origin": [ 190.762, 85.520, 143.622 ], "x_axis": [ 0.015, -0.851, -0.524 ], "y_axis": [ 0.615, 0.421, -0.666 ], "z_axis": [ 0.788, -0.313, 0.530 ], "quaternion": [ 0.701, -0.126, 0.468, -0.523 ] } }, { "index": 548, "nt1": "///A/1097", "nt2": "///A/1156", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": -171.516, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 66.937, "chi2": -96.595, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 123.499, "C1C1_dist": 8.967, "N1N9_dist": 9.332, "C6C8_dist": 11.498, "CNNC_torsion": 68.527, "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.88]", "interBase_angle": 59.544, "planarity": 0.771, "simple_Shear": -2.149, "simple_Stretch": 5.812, "simple_Buckle": -1.003, "simple_Propeller": 59.535, "bp_simpleParams": [ -2.149, 5.812, -1.599, -1.003, 59.535, 99.455 ], "bp_params": [ -4.310, 4.452, -1.599, -24.835, 54.117, 104.553 ], "frame": { "rmsd": null, "origin": [ 195.489, 79.649, 139.223 ], "x_axis": [ 0.340, -0.202, -0.918 ], "y_axis": [ 0.676, 0.731, 0.090 ], "z_axis": [ 0.653, -0.652, 0.386 ], "quaternion": [ 0.784, 0.237, 0.501, -0.280 ] } }, { "index": 549, "nt1": "///A/1098", "nt2": "///A/1154", "bp": "C-U", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": -72.726, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 72.915, "chi2": -164.494, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 128.724, "C1C1_dist": 5.571, "N1N9_dist": 6.078, "C6C8_dist": 8.270, "CNNC_torsion": 12.599, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-O2'(hydroxyl)[2.44],N3*O2(carbonyl)[2.80]", "interBase_angle": 42.548, "planarity": 0.424, "simple_Shear": -2.221, "simple_Stretch": 2.164, "simple_Buckle": 42.542, "simple_Propeller": -0.693, "bp_simpleParams": [ -2.221, 2.164, -1.528, 42.542, -0.693, 96.667 ], "bp_params": [ -2.804, 1.325, -1.528, 40.448, 13.200, 93.411 ], "frame": { "rmsd": null, "origin": [ 199.666, 81.972, 142.013 ], "x_axis": [ -0.111, 0.558, -0.822 ], "y_axis": [ 0.148, 0.827, 0.542 ], "z_axis": [ 0.983, -0.062, -0.175 ], "quaternion": [ 0.621, 0.243, 0.727, 0.165 ] } }, { "index": 550, "nt1": "///A/1177", "nt2": "///A/1178", "bp": "G+U", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -99.354, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 144.648, "chi2": -117.337, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 60.717, "C1C1_dist": 6.508, "N1N9_dist": 7.009, "C6C8_dist": 6.984, "CNNC_torsion": -17.416, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O4(carbonyl)[3.95]", "interBase_angle": 14.270, "planarity": 0.208, "simple_Shear": 0.683, "simple_Stretch": 9.348, "simple_Buckle": 10.704, "simple_Propeller": -9.437, "bp_simpleParams": [ 0.683, 9.348, 0.920, 10.704, -9.437, 29.227 ], "bp_params": [ 9.084, 2.311, 0.920, -5.560, -13.142, 29.379 ], "frame": { "rmsd": null, "origin": [ 171.631, 128.097, 182.115 ], "x_axis": [ 0.044, 0.669, 0.742 ], "y_axis": [ 0.946, 0.211, -0.246 ], "z_axis": [ -0.321, 0.713, -0.623 ], "quaternion": [ -0.397, 0.603, 0.669, 0.174 ] } }, { "index": 551, "nt1": "///A/1179", "nt2": "///A/2067", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cW.", "DSSR": "cW-.", "intra_chain": true, "chi1": -91.526, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 66.856, "chi2": -168.842, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 95.500, "C1C1_dist": 10.994, "N1N9_dist": 10.643, "C6C8_dist": 12.530, "CNNC_torsion": 57.649, "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.63]", "interBase_angle": 60.646, "planarity": 0.790, "simple_Shear": -2.666, "simple_Stretch": 4.840, "simple_Buckle": 36.028, "simple_Propeller": 48.785, "bp_simpleParams": [ -2.666, 4.840, -2.268, 36.028, 48.785, 60.581 ], "bp_params": [ -3.931, 3.883, -2.268, 19.810, 57.319, 66.603 ], "frame": { "rmsd": null, "origin": [ 169.646, 133.063, 177.978 ], "x_axis": [ -0.254, 0.376, 0.891 ], "y_axis": [ 0.880, -0.294, 0.374 ], "z_axis": [ 0.403, 0.879, -0.256 ], "quaternion": [ -0.222, 0.569, 0.551, 0.568 ] } }, { "index": 552, "nt1": "///A/1181", "nt2": "///A/1184", "bp": "C-G", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -170.806, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 11.632, "chi2": -156.379, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 31.259, "C1C1_dist": 11.043, "N1N9_dist": 8.379, "C6C8_dist": 6.712, "CNNC_torsion": -117.721, "hbonds_num": 1, "hbonds_desc": "N4(amino)-N7[2.63]", "interBase_angle": 22.628, "planarity": 0.293, "simple_Shear": 1.994, "simple_Stretch": 3.120, "simple_Buckle": 21.627, "simple_Propeller": 6.655, "bp_simpleParams": [ 1.994, 3.120, -0.290, 21.627, 6.655, -131.392 ], "bp_params": [ 3.284, 1.709, -0.290, 22.049, -5.086, -130.628 ], "frame": { "rmsd": null, "origin": [ 163.229, 120.705, 167.111 ], "x_axis": [ 0.832, 0.373, 0.410 ], "y_axis": [ 0.336, 0.249, -0.908 ], "z_axis": [ -0.441, 0.894, 0.082 ], "quaternion": [ 0.735, -0.613, -0.289, 0.013 ] } }, { "index": 553, "nt1": "///A/1185", "nt2": "///A/1189", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -167.069, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 98.181, "chi2": -139.492, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 54.360, "C1C1_dist": 8.832, "N1N9_dist": 8.590, "C6C8_dist": 10.720, "CNNC_torsion": 159.275, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[2.67],N2(amino)-N3[3.93]", "interBase_angle": 29.738, "planarity": 0.346, "simple_Shear": 6.666, "simple_Stretch": 4.536, "simple_Buckle": 26.585, "simple_Propeller": -13.325, "bp_simpleParams": [ 6.666, 4.536, 0.456, 26.585, -13.325, -136.851 ], "bp_params": [ -1.739, -7.873, 0.456, -28.437, -8.697, -135.728 ], "frame": { "rmsd": null, "origin": [ 164.800, 117.941, 166.731 ], "x_axis": [ 0.067, -0.161, 0.985 ], "y_axis": [ -0.841, -0.540, -0.031 ], "z_axis": [ 0.537, -0.826, -0.171 ], "quaternion": [ 0.298, 0.667, -0.375, 0.570 ] } }, { "index": 554, "nt1": "///A/1210", "nt2": "///A/1226", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.035, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.460, "chi2": -157.393, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.361, "C1C1_dist": 10.755, "N1N9_dist": 9.196, "C6C8_dist": 10.233, "CNNC_torsion": -3.263, "hbonds_num": 1, "hbonds_desc": "N1-N3(imino)[3.24]", "interBase_angle": 1.064, "planarity": 0.052, "simple_Shear": 1.101, "simple_Stretch": 0.352, "simple_Buckle": -1.051, "simple_Propeller": -0.165, "bp_simpleParams": [ 1.101, 0.352, 0.216, -1.051, -0.165, 3.651 ], "bp_params": [ 1.134, 0.222, 0.216, -1.063, -0.042, 3.650 ], "frame": { "rmsd": null, "origin": [ 134.124, 156.773, 152.899 ], "x_axis": [ -0.412, -0.750, -0.518 ], "y_axis": [ -0.807, 0.035, 0.590 ], "z_axis": [ -0.424, 0.661, -0.619 ], "quaternion": [ 0.033, -0.541, 0.719, 0.435 ] } }, { "index": 555, "nt1": "///A/1211", "nt2": "///A/1225", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.086, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.335, "chi2": -168.391, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.958, "C1C1_dist": 10.536, "N1N9_dist": 8.890, "C6C8_dist": 9.877, "CNNC_torsion": -6.346, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.98]", "interBase_angle": 3.448, "planarity": 0.132, "simple_Shear": 0.191, "simple_Stretch": -0.143, "simple_Buckle": 3.447, "simple_Propeller": -0.085, "bp_simpleParams": [ 0.191, -0.143, 0.432, 3.447, -0.085, 2.411 ], "bp_params": [ 0.189, -0.146, 0.432, 3.445, -0.137, 2.410 ], "frame": { "rmsd": null, "origin": [ 133.944, 158.301, 149.632 ], "x_axis": [ -0.712, -0.682, -0.167 ], "y_axis": [ -0.528, 0.362, 0.768 ], "z_axis": [ -0.464, 0.635, -0.618 ], "quaternion": [ -0.090, -0.369, 0.820, 0.428 ] } }, { "index": 556, "nt1": "///A/1212", "nt2": "///A/1224", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.853, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.471, "chi2": -170.797, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.043, "C1C1_dist": 10.524, "N1N9_dist": 8.883, "C6C8_dist": 9.866, "CNNC_torsion": -7.652, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.88],O4(carbonyl)-N6(amino)[3.05]", "interBase_angle": 4.426, "planarity": 0.132, "simple_Shear": -0.093, "simple_Stretch": -0.086, "simple_Buckle": 2.084, "simple_Propeller": -3.905, "bp_simpleParams": [ -0.093, -0.086, 0.497, 2.084, -3.905, 1.495 ], "bp_params": [ -0.092, -0.087, 0.497, 2.140, -3.875, 1.496 ], "frame": { "rmsd": null, "origin": [ 133.076, 159.630, 146.282 ], "x_axis": [ -0.882, -0.392, 0.262 ], "y_axis": [ -0.090, 0.686, 0.722 ], "z_axis": [ -0.463, 0.613, -0.640 ], "quaternion": [ -0.203, -0.135, 0.895, 0.373 ] } }, { "index": 557, "nt1": "///A/1213", "nt2": "///A/1223", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.565, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.882, "chi2": -161.908, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.288, "C1C1_dist": 10.505, "N1N9_dist": 8.902, "C6C8_dist": 9.898, "CNNC_torsion": 5.825, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.72]", "interBase_angle": 7.846, "planarity": 0.102, "simple_Shear": -0.207, "simple_Stretch": -0.128, "simple_Buckle": 4.558, "simple_Propeller": 6.386, "bp_simpleParams": [ -0.207, -0.128, -0.116, 4.558, 6.386, 2.065 ], "bp_params": [ -0.205, -0.131, -0.116, 4.458, 6.456, 2.066 ], "frame": { "rmsd": null, "origin": [ 131.432, 159.978, 143.511 ], "x_axis": [ -0.749, -0.106, 0.654 ], "y_axis": [ 0.300, 0.826, 0.477 ], "z_axis": [ -0.591, 0.554, -0.586 ], "quaternion": [ -0.350, 0.054, 0.889, 0.290 ] } }, { "index": 558, "nt1": "///A/1214", "nt2": "///A/1222", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.819, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 46.971, "chi2": 164.147, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 43.496, "C1C1_dist": 11.139, "N1N9_dist": 9.065, "C6C8_dist": 9.712, "CNNC_torsion": 15.298, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.91],O4(carbonyl)-N6(amino)[2.74]", "interBase_angle": 11.474, "planarity": 0.188, "simple_Shear": -0.053, "simple_Stretch": -0.182, "simple_Buckle": 2.723, "simple_Propeller": 11.146, "bp_simpleParams": [ -0.053, -0.182, -0.589, 2.723, 11.146, -12.238 ], "bp_params": [ -0.052, -0.182, -0.589, 2.617, 11.171, -12.293 ], "frame": { "rmsd": null, "origin": [ 128.598, 160.132, 140.963 ], "x_axis": [ -0.325, 0.419, 0.848 ], "y_axis": [ 0.659, 0.743, -0.115 ], "z_axis": [ -0.678, 0.521, -0.518 ], "quaternion": [ -0.474, 0.335, 0.804, 0.126 ] } }, { "index": 559, "nt1": "///A/1215", "nt2": "///A/1221", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.654, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.744, "chi2": 176.155, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.370, "C1C1_dist": 10.652, "N1N9_dist": 8.762, "C6C8_dist": 9.554, "CNNC_torsion": 15.851, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.76],O4(carbonyl)-N6(amino)[2.81]", "interBase_angle": 18.238, "planarity": 0.250, "simple_Shear": -0.093, "simple_Stretch": -0.306, "simple_Buckle": 15.775, "simple_Propeller": 9.153, "bp_simpleParams": [ -0.093, -0.306, -0.984, 15.775, 9.153, -5.499 ], "bp_params": [ -0.090, -0.307, -0.984, 15.714, 9.257, -5.466 ], "frame": { "rmsd": null, "origin": [ 125.800, 161.010, 140.140 ], "x_axis": [ 0.148, 0.665, 0.732 ], "y_axis": [ 0.675, 0.473, -0.567 ], "z_axis": [ -0.723, 0.577, -0.379 ], "quaternion": [ 0.557, -0.513, -0.653, -0.004 ] } }, { "index": 560, "nt1": "///A/1216", "nt2": "///A/1220", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.650, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.166, "chi2": -156.033, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.306, "C1C1_dist": 10.074, "N1N9_dist": 8.519, "C6C8_dist": 9.572, "CNNC_torsion": 2.980, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.47],N3-N1(imino)[2.79],N4(amino)-O6(carbonyl)[3.03]", "interBase_angle": 25.176, "planarity": 0.316, "simple_Shear": -0.163, "simple_Stretch": -0.324, "simple_Buckle": 22.075, "simple_Propeller": -12.103, "bp_simpleParams": [ -0.163, -0.324, -1.438, 22.075, -12.103, 10.215 ], "bp_params": [ -0.153, -0.329, -1.438, 22.501, -11.293, 10.070 ], "frame": { "rmsd": null, "origin": [ 123.870, 163.625, 140.766 ], "x_axis": [ 0.618, 0.683, 0.389 ], "y_axis": [ 0.332, 0.222, -0.917 ], "z_axis": [ -0.713, 0.696, -0.089 ], "quaternion": [ 0.662, -0.609, -0.416, 0.133 ] } }, { "index": 561, "nt1": "///A/1216", "nt2": "///A/1221", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.650, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 77.562, "chi2": 176.155, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.234, "C1C1_dist": 8.296, "N1N9_dist": 7.226, "C6C8_dist": 8.564, "CNNC_torsion": -5.462, "hbonds_num": 1, "hbonds_desc": "N3-N6(amino)[3.20]", "interBase_angle": 34.561, "planarity": 0.713, "simple_Shear": 1.385, "simple_Stretch": -0.765, "simple_Buckle": 29.623, "simple_Propeller": 17.804, "bp_simpleParams": [ 1.385, -0.765, 1.705, 29.623, 17.804, 32.523 ], "bp_params": [ 1.249, -0.972, 1.705, 32.118, 12.764, 31.516 ], "frame": { "rmsd": null, "origin": [ 124.918, 162.217, 140.426 ], "x_axis": [ 0.410, 0.734, 0.541 ], "y_axis": [ 0.502, 0.314, -0.806 ], "z_axis": [ -0.762, 0.602, -0.239 ], "quaternion": [ 0.609, -0.578, -0.535, 0.095 ] } }, { "index": 562, "nt1": "///A/1237", "nt2": "///A/1290", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.528, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.197, "chi2": -100.961, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 51.033, "C1C1_dist": 10.824, "N1N9_dist": 9.157, "C6C8_dist": 10.150, "CNNC_torsion": -21.371, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.23],N3-N1(imino)[3.27],N4(amino)-O6(carbonyl)[3.51]", "interBase_angle": 27.499, "planarity": 0.374, "simple_Shear": 0.657, "simple_Stretch": 0.220, "simple_Buckle": -10.560, "simple_Propeller": -25.391, "bp_simpleParams": [ 0.657, 0.220, 0.226, -10.560, -25.391, 3.722 ], "bp_params": [ 0.671, 0.171, 0.226, -12.259, -24.616, 3.788 ], "frame": { "rmsd": null, "origin": [ 138.223, 178.195, 170.277 ], "x_axis": [ 0.214, 0.588, -0.780 ], "y_axis": [ -0.822, -0.323, -0.469 ], "z_axis": [ -0.527, 0.742, 0.415 ], "quaternion": [ 0.571, -0.530, 0.111, 0.617 ] } }, { "index": 563, "nt1": "///A/1238", "nt2": "///A/1289", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 174.181, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.527, "chi2": -148.068, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 96.664, "C1C1_dist": 9.691, "N1N9_dist": 9.075, "C6C8_dist": 10.837, "CNNC_torsion": -6.756, "hbonds_num": 2, "hbonds_desc": "N1(imino)-O2(carbonyl)[3.03],N2(amino)-O2(carbonyl)[2.89]", "interBase_angle": 8.699, "planarity": 0.115, "simple_Shear": -2.552, "simple_Stretch": 2.033, "simple_Buckle": 4.786, "simple_Propeller": -7.265, "bp_simpleParams": [ -2.552, 2.033, 0.174, 4.786, -7.265, 46.593 ], "bp_params": [ -3.007, 1.265, 0.174, 6.573, -5.699, 46.576 ], "frame": { "rmsd": null, "origin": [ 137.546, 182.928, 169.868 ], "x_axis": [ -0.022, 0.529, -0.848 ], "y_axis": [ -0.720, -0.596, -0.354 ], "z_axis": [ -0.693, 0.603, 0.394 ], "quaternion": [ 0.441, -0.543, 0.088, 0.709 ] } }, { "index": 564, "nt1": "///A/1239", "nt2": "///A/1287", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.970, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.450, "chi2": -160.893, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 56.415, "C1C1_dist": 10.649, "N1N9_dist": 8.959, "C6C8_dist": 9.908, "CNNC_torsion": -4.939, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.91],O4(carbonyl)-N6(amino)[3.02]", "interBase_angle": 4.148, "planarity": 0.076, "simple_Shear": -0.089, "simple_Stretch": -0.029, "simple_Buckle": 3.539, "simple_Propeller": -2.164, "bp_simpleParams": [ -0.089, -0.029, 0.160, 3.539, -2.164, 0.156 ], "bp_params": [ -0.089, -0.030, 0.160, 3.569, -2.115, 0.155 ], "frame": { "rmsd": null, "origin": [ 136.406, 185.760, 172.237 ], "x_axis": [ -0.615, -0.149, -0.774 ], "y_axis": [ -0.331, -0.842, 0.426 ], "z_axis": [ -0.715, 0.518, 0.469 ], "quaternion": [ 0.053, -0.435, 0.276, 0.855 ] } }, { "index": 565, "nt1": "///A/1240", "nt2": "///A/1286", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.800, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.635, "chi2": -161.702, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.474, "C1C1_dist": 10.404, "N1N9_dist": 8.757, "C6C8_dist": 9.740, "CNNC_torsion": -4.453, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.87],O4(carbonyl)-N6(amino)[2.99]", "interBase_angle": 7.960, "planarity": 0.246, "simple_Shear": -0.082, "simple_Stretch": -0.232, "simple_Buckle": 5.350, "simple_Propeller": 5.895, "bp_simpleParams": [ -0.082, -0.232, 0.914, 5.350, 5.895, 2.732 ], "bp_params": [ -0.079, -0.233, 0.914, 5.278, 5.959, 2.733 ], "frame": { "rmsd": null, "origin": [ 134.179, 188.734, 172.820 ], "x_axis": [ -0.569, -0.642, -0.514 ], "y_axis": [ 0.047, -0.649, 0.759 ], "z_axis": [ -0.821, 0.408, 0.399 ], "quaternion": [ -0.213, -0.413, 0.361, 0.809 ] } }, { "index": 566, "nt1": "///A/1241", "nt2": "///A/1285", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.981, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.818, "chi2": -176.193, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.054, "C1C1_dist": 10.435, "N1N9_dist": 8.806, "C6C8_dist": 9.808, "CNNC_torsion": -10.198, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.68],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.98]", "interBase_angle": 3.203, "planarity": 0.211, "simple_Shear": 0.186, "simple_Stretch": -0.242, "simple_Buckle": 2.655, "simple_Propeller": -1.791, "bp_simpleParams": [ 0.186, -0.242, 0.835, 2.655, -1.791, 2.665 ], "bp_params": [ 0.183, -0.245, 0.835, 2.629, -1.829, 2.665 ], "frame": { "rmsd": null, "origin": [ 130.997, 190.194, 172.059 ], "x_axis": [ -0.256, -0.966, -0.036 ], "y_axis": [ 0.278, -0.110, 0.954 ], "z_axis": [ -0.926, 0.235, 0.297 ], "quaternion": [ -0.482, -0.373, 0.461, 0.645 ] } }, { "index": 567, "nt1": "///A/1242", "nt2": "///A/1284", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.313, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.801, "chi2": 178.068, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.924, "C1C1_dist": 10.656, "N1N9_dist": 8.898, "C6C8_dist": 9.813, "CNNC_torsion": -7.931, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.86],O4(carbonyl)-N6(amino)[2.94]", "interBase_angle": 4.431, "planarity": 0.113, "simple_Shear": -0.037, "simple_Stretch": -0.135, "simple_Buckle": 0.495, "simple_Propeller": -4.403, "bp_simpleParams": [ -0.037, -0.135, 0.431, 0.495, -4.403, -1.496 ], "bp_params": [ -0.036, -0.136, 0.431, 0.534, -4.398, -1.497 ], "frame": { "rmsd": null, "origin": [ 127.518, 190.986, 170.877 ], "x_axis": [ -0.078, -0.879, 0.470 ], "y_axis": [ 0.326, 0.423, 0.845 ], "z_axis": [ -0.942, 0.219, 0.254 ], "quaternion": [ 0.632, 0.247, -0.558, -0.476 ] } }, { "index": 568, "nt1": "///A/1243", "nt2": "///A/1283", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.698, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.138, "chi2": -161.075, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.552, "C1C1_dist": 10.443, "N1N9_dist": 8.787, "C6C8_dist": 9.773, "CNNC_torsion": 4.856, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.98],N1-N3(imino)[2.81]", "interBase_angle": 14.245, "planarity": 0.177, "simple_Shear": 0.050, "simple_Stretch": -0.162, "simple_Buckle": 5.176, "simple_Propeller": 13.271, "bp_simpleParams": [ 0.050, -0.162, 0.519, 5.176, 13.271, 2.989 ], "bp_params": [ 0.048, -0.162, 0.519, 5.328, 13.211, 3.005 ], "frame": { "rmsd": null, "origin": [ 124.287, 190.457, 170.419 ], "x_axis": [ 0.297, -0.572, 0.764 ], "y_axis": [ 0.335, 0.812, 0.477 ], "z_axis": [ -0.894, 0.114, 0.433 ], "quaternion": [ 0.797, 0.114, -0.520, -0.284 ] } }, { "index": 569, "nt1": "///A/1244", "nt2": "///A/1282", "bp": "A+U", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": 19.198, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 37.237, "chi2": -174.186, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.008, "C1C1_dist": 10.358, "N1N9_dist": 8.258, "C6C8_dist": 7.680, "CNNC_torsion": 8.179, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.70]", "interBase_angle": 19.932, "planarity": 0.217, "simple_Shear": -3.510, "simple_Stretch": 1.422, "simple_Buckle": -18.566, "simple_Propeller": 7.253, "bp_simpleParams": [ -3.510, 1.422, -0.360, -18.566, 7.253, 94.273 ], "bp_params": [ 0.531, -3.750, -0.360, 3.092, -19.691, 95.100 ], "frame": { "rmsd": null, "origin": [ 121.892, 190.670, 172.427 ], "x_axis": [ 0.293, -0.740, 0.605 ], "y_axis": [ -0.411, -0.669, -0.620 ], "z_axis": [ 0.863, -0.067, -0.500 ], "quaternion": [ -0.176, 0.785, -0.367, 0.468 ] } }, { "index": 570, "nt1": "///A/1245", "nt2": "///A/1281", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cHH", "DSSR": "cM-M", "intra_chain": true, "chi1": 63.759, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 25.374, "chi2": 22.291, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 40.988, "C1C1_dist": 10.922, "N1N9_dist": 8.498, "C6C8_dist": 6.132, "CNNC_torsion": 41.816, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.16]", "interBase_angle": 3.785, "planarity": 0.303, "simple_Shear": 0.436, "simple_Stretch": 4.616, "simple_Buckle": -1.009, "simple_Propeller": 3.648, "bp_simpleParams": [ 0.436, 4.616, 1.640, -1.009, 3.648, -163.454 ], "bp_params": [ 1.467, 4.399, 1.640, -0.159, 3.782, -163.462 ], "frame": { "rmsd": null, "origin": [ 120.955, 188.794, 175.390 ], "x_axis": [ -0.816, -0.410, -0.407 ], "y_axis": [ -0.398, 0.910, -0.117 ], "z_axis": [ 0.418, 0.066, -0.906 ], "quaternion": [ 0.217, -0.212, 0.953, -0.013 ] } }, { "index": 571, "nt1": "///A/1246", "nt2": "///A/1280", "bp": "G+G", "name": "--", "Saenger": "06-VI", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": 81.494, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 36.287, "chi2": -172.969, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.245, "C1C1_dist": 11.042, "N1N9_dist": 9.096, "C6C8_dist": 8.595, "CNNC_torsion": 13.738, "hbonds_num": 3, "hbonds_desc": "N7-N1(imino)[3.19],N7-N2(amino)[2.76],O6(carbonyl)-N1(imino)[2.95]", "interBase_angle": 5.169, "planarity": 0.115, "simple_Shear": -3.069, "simple_Stretch": 2.247, "simple_Buckle": -3.334, "simple_Propeller": 3.950, "bp_simpleParams": [ -3.069, 2.247, 0.552, -3.334, 3.950, 91.060 ], "bp_params": [ -0.698, -3.739, 0.552, -2.119, -4.715, 91.099 ], "frame": { "rmsd": null, "origin": [ 118.098, 189.292, 177.825 ], "x_axis": [ 0.829, 0.234, 0.508 ], "y_axis": [ 0.197, -0.972, 0.127 ], "z_axis": [ 0.524, -0.005, -0.852 ], "quaternion": [ 0.034, 0.956, 0.113, 0.270 ] } }, { "index": 572, "nt1": "///A/1247", "nt2": "///A/1279", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -116.129, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 53.811, "chi2": -168.799, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.677, "C1C1_dist": 10.682, "N1N9_dist": 8.931, "C6C8_dist": 9.826, "CNNC_torsion": 19.697, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.81]", "interBase_angle": 17.039, "planarity": 0.232, "simple_Shear": -0.184, "simple_Stretch": -0.185, "simple_Buckle": 6.552, "simple_Propeller": 15.729, "bp_simpleParams": [ -0.184, -0.185, -0.360, 6.552, 15.729, -2.220 ], "bp_params": [ -0.182, -0.187, -0.360, 6.361, 15.807, -2.237 ], "frame": { "rmsd": null, "origin": [ 118.108, 186.972, 182.108 ], "x_axis": [ 0.024, 0.990, 0.137 ], "y_axis": [ -0.822, 0.098, -0.560 ], "z_axis": [ -0.568, -0.099, 0.817 ], "quaternion": [ 0.696, -0.166, -0.253, 0.651 ] } }, { "index": 573, "nt1": "///A/1248", "nt2": "///A/1278", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.716, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.630, "chi2": -171.151, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.383, "C1C1_dist": 10.770, "N1N9_dist": 8.937, "C6C8_dist": 9.818, "CNNC_torsion": 15.578, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.82],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 18.069, "planarity": 0.241, "simple_Shear": 0.064, "simple_Stretch": -0.167, "simple_Buckle": 11.547, "simple_Propeller": 13.897, "bp_simpleParams": [ 0.064, -0.167, -0.664, 11.547, 13.897, -2.569 ], "bp_params": [ 0.062, -0.167, -0.664, 11.652, 13.809, -2.574 ], "frame": { "rmsd": null, "origin": [ 117.968, 186.622, 186.032 ], "x_axis": [ -0.362, 0.914, -0.183 ], "y_axis": [ -0.713, -0.398, -0.577 ], "z_axis": [ -0.600, -0.078, 0.796 ], "quaternion": [ 0.509, -0.245, -0.205, 0.799 ] } }, { "index": 574, "nt1": "///A/1249", "nt2": "///A/1278", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.100, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 88.664, "chi2": -171.151, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 60.570, "C1C1_dist": 7.611, "N1N9_dist": 6.858, "C6C8_dist": 8.380, "CNNC_torsion": 6.633, "hbonds_num": 1, "hbonds_desc": "N3(imino)-O6(carbonyl)[3.00]", "interBase_angle": 36.500, "planarity": 0.905, "simple_Shear": 1.876, "simple_Stretch": -0.681, "simple_Buckle": 25.861, "simple_Propeller": 25.758, "bp_simpleParams": [ 1.876, -0.681, 1.682, 25.861, 25.758, 45.220 ], "bp_params": [ 1.675, -1.085, 1.682, 30.989, 19.285, 44.331 ], "frame": { "rmsd": null, "origin": [ 117.081, 187.569, 186.725 ], "x_axis": [ -0.556, 0.682, -0.475 ], "y_axis": [ -0.589, -0.727, -0.354 ], "z_axis": [ -0.587, 0.083, 0.806 ], "quaternion": [ 0.361, -0.302, -0.077, 0.879 ] } }, { "index": 575, "nt1": "///A/1252", "nt2": "///A/1277", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -125.285, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 102.868, "chi2": -149.416, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 15.105, "C1C1_dist": 8.955, "N1N9_dist": 7.947, "C6C8_dist": 8.465, "CNNC_torsion": -61.148, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.95],N3-N6(amino)[3.00]", "interBase_angle": 23.575, "planarity": 0.423, "simple_Shear": 7.387, "simple_Stretch": 2.121, "simple_Buckle": 1.537, "simple_Propeller": 23.525, "bp_simpleParams": [ 7.387, 2.121, 1.074, 1.537, 23.525, 6.467 ], "bp_params": [ 6.355, -4.322, 1.074, 19.055, 13.881, 6.426 ], "frame": { "rmsd": null, "origin": [ 117.317, 181.378, 197.047 ], "x_axis": [ -0.492, -0.515, 0.702 ], "y_axis": [ -0.607, -0.375, -0.701 ], "z_axis": [ 0.624, -0.771, -0.128 ], "quaternion": [ 0.035, 0.503, -0.558, 0.659 ] } }, { "index": 576, "nt1": "///A/1253", "nt2": "///A/1276", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": 170.945, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 14.599, "chi2": -93.787, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 99.576, "C1C1_dist": 8.963, "N1N9_dist": 7.922, "C6C8_dist": 8.141, "CNNC_torsion": -118.967, "hbonds_num": 3, "hbonds_desc": "OP2-N2(amino)[3.26],N7-N2(amino)[3.31],N6(amino)-O4'[3.71]", "interBase_angle": 40.479, "planarity": 0.593, "simple_Shear": -7.983, "simple_Stretch": 3.618, "simple_Buckle": -17.510, "simple_Propeller": 36.496, "bp_simpleParams": [ -7.983, 3.618, 0.172, -17.510, 36.496, -12.995 ], "bp_params": [ -7.053, -5.204, 0.172, -40.372, 2.945, -12.208 ], "frame": { "rmsd": null, "origin": [ 122.280, 179.358, 196.122 ], "x_axis": [ -0.265, -0.518, 0.813 ], "y_axis": [ -0.668, -0.510, -0.542 ], "z_axis": [ 0.695, -0.687, -0.210 ], "quaternion": [ 0.060, 0.603, -0.491, 0.625 ] } }, { "index": 577, "nt1": "///A/1254", "nt2": "///A/1275", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -178.423, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 9.513, "chi2": -137.511, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 104.032, "C1C1_dist": 9.586, "N1N9_dist": 8.575, "C6C8_dist": 9.134, "CNNC_torsion": 11.608, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[3.47],N6(amino)-N3[3.12]", "interBase_angle": 17.662, "planarity": 0.227, "simple_Shear": -7.495, "simple_Stretch": 2.911, "simple_Buckle": -2.891, "simple_Propeller": 17.424, "bp_simpleParams": [ -7.495, 2.911, -0.321, -2.891, 17.424, 5.006 ], "bp_params": [ -7.008, -3.942, -0.321, -15.286, 8.849, 4.976 ], "frame": { "rmsd": null, "origin": [ 124.368, 176.761, 194.812 ], "x_axis": [ -0.646, -0.647, 0.405 ], "y_axis": [ -0.534, 0.004, -0.845 ], "z_axis": [ 0.545, -0.763, -0.348 ], "quaternion": [ 0.049, -0.418, 0.707, -0.569 ] } }, { "index": 578, "nt1": "///A/1255", "nt2": "///A/1274", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.120, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 45.180, "chi2": -170.604, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.149, "C1C1_dist": 10.466, "N1N9_dist": 8.652, "C6C8_dist": 9.501, "CNNC_torsion": 4.936, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.80],N1(imino)-O2(carbonyl)[2.84],N2(amino)-O2(carbonyl)[2.97]", "interBase_angle": 10.065, "planarity": 0.118, "simple_Shear": -1.341, "simple_Stretch": -0.398, "simple_Buckle": 3.408, "simple_Propeller": 9.470, "bp_simpleParams": [ -1.341, -0.398, 0.033, 3.408, 9.470, -3.970 ], "bp_params": [ -1.278, -0.568, 0.033, 2.149, 9.833, -3.984 ], "frame": { "rmsd": null, "origin": [ 125.822, 174.224, 194.135 ], "x_axis": [ -0.843, -0.224, -0.488 ], "y_axis": [ 0.268, 0.612, -0.744 ], "z_axis": [ 0.466, -0.758, -0.457 ], "quaternion": [ 0.280, 0.013, 0.853, -0.440 ] } }, { "index": 579, "nt1": "///A/1256", "nt2": "///A/1273", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.480, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.963, "chi2": -173.218, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.724, "C1C1_dist": 10.546, "N1N9_dist": 8.889, "C6C8_dist": 9.875, "CNNC_torsion": 4.051, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.71],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 5.110, "planarity": 0.071, "simple_Shear": 0.204, "simple_Stretch": -0.138, "simple_Buckle": 2.955, "simple_Propeller": 4.169, "bp_simpleParams": [ 0.204, -0.138, -0.107, 2.955, 4.169, 2.066 ], "bp_params": [ 0.201, -0.142, -0.107, 3.023, 4.119, 2.066 ], "frame": { "rmsd": null, "origin": [ 125.742, 170.481, 193.295 ], "x_axis": [ -0.525, 0.226, -0.820 ], "y_axis": [ 0.750, 0.578, -0.321 ], "z_axis": [ 0.401, -0.784, -0.474 ], "quaternion": [ 0.380, 0.304, 0.803, -0.344 ] } }, { "index": 580, "nt1": "///A/1257", "nt2": "///A/1272", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.006, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.339, "chi2": -174.698, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.170, "C1C1_dist": 10.659, "N1N9_dist": 8.917, "C6C8_dist": 9.860, "CNNC_torsion": 1.019, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 4.586, "planarity": 0.084, "simple_Shear": 0.189, "simple_Stretch": -0.156, "simple_Buckle": 1.018, "simple_Propeller": 4.471, "bp_simpleParams": [ 0.189, -0.156, 0.188, 1.018, 4.471, 0.472 ], "bp_params": [ 0.187, -0.158, 0.188, 1.082, 4.456, 0.472 ], "frame": { "rmsd": null, "origin": [ 125.143, 167.256, 191.491 ], "x_axis": [ -0.071, 0.615, -0.785 ], "y_axis": [ 0.950, 0.282, 0.135 ], "z_axis": [ 0.304, -0.736, -0.605 ], "quaternion": [ 0.389, 0.559, 0.699, -0.215 ] } }, { "index": 581, "nt1": "///A/1258", "nt2": "///A/1271", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.674, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.615, "chi2": -169.197, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.889, "C1C1_dist": 10.726, "N1N9_dist": 8.944, "C6C8_dist": 9.853, "CNNC_torsion": 2.610, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.97],N1-N3(imino)[2.91]", "interBase_angle": 8.991, "planarity": 0.132, "simple_Shear": -0.011, "simple_Stretch": -0.095, "simple_Buckle": 1.544, "simple_Propeller": 8.857, "bp_simpleParams": [ -0.011, -0.095, 0.458, 1.544, 8.857, -0.730 ], "bp_params": [ -0.011, -0.095, 0.458, 1.584, 8.850, -0.732 ], "frame": { "rmsd": null, "origin": [ 124.069, 165.322, 188.512 ], "x_axis": [ 0.341, 0.786, -0.517 ], "y_axis": [ 0.895, -0.103, 0.434 ], "z_axis": [ 0.288, -0.610, -0.738 ], "quaternion": [ 0.353, 0.738, 0.569, -0.077 ] } }, { "index": 582, "nt1": "///A/1259", "nt2": "///A/1270", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.695, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.308, "chi2": -171.200, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.469, "C1C1_dist": 10.667, "N1N9_dist": 8.909, "C6C8_dist": 9.828, "CNNC_torsion": 0.600, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 8.965, "planarity": 0.098, "simple_Shear": -0.164, "simple_Stretch": -0.169, "simple_Buckle": 7.844, "simple_Propeller": 4.340, "bp_simpleParams": [ -0.164, -0.169, 0.211, 7.844, 4.340, -0.355 ], "bp_params": [ -0.162, -0.170, 0.211, 7.800, 4.419, -0.355 ], "frame": { "rmsd": null, "origin": [ 124.090, 164.675, 185.043 ], "x_axis": [ 0.714, 0.683, -0.150 ], "y_axis": [ 0.629, -0.533, 0.565 ], "z_axis": [ 0.306, -0.498, -0.811 ], "quaternion": [ 0.304, 0.875, 0.375, 0.045 ] } }, { "index": 583, "nt1": "///A/1261", "nt2": "///A/1268", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.710, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.402, "chi2": -168.786, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.022, "C1C1_dist": 10.773, "N1N9_dist": 8.969, "C6C8_dist": 9.883, "CNNC_torsion": -0.374, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.80],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 1.824, "planarity": 0.042, "simple_Shear": 0.223, "simple_Stretch": -0.136, "simple_Buckle": 1.298, "simple_Propeller": 1.281, "bp_simpleParams": [ 0.223, -0.136, 0.095, 1.298, 1.281, -0.679 ], "bp_params": [ 0.220, -0.139, 0.095, 1.320, 1.259, -0.679 ], "frame": { "rmsd": null, "origin": [ 126.481, 164.605, 177.927 ], "x_axis": [ 0.872, -0.208, 0.444 ], "y_axis": [ -0.372, -0.870, 0.324 ], "z_axis": [ 0.319, -0.447, -0.836 ], "quaternion": [ 0.204, 0.946, -0.153, 0.202 ] } }, { "index": 584, "nt1": "///A/1262", "nt2": "///A/1267", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.365, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.328, "chi2": -177.523, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.855, "C1C1_dist": 10.738, "N1N9_dist": 8.908, "C6C8_dist": 9.796, "CNNC_torsion": -3.891, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.80],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.86]", "interBase_angle": 1.601, "planarity": 0.130, "simple_Shear": 0.168, "simple_Stretch": -0.227, "simple_Buckle": 1.255, "simple_Propeller": 0.995, "bp_simpleParams": [ 0.168, -0.227, 0.521, 1.255, 0.995, -1.513 ], "bp_params": [ 0.165, -0.229, 0.521, 1.266, 0.980, -1.513 ], "frame": { "rmsd": null, "origin": [ 128.712, 164.880, 174.662 ], "x_axis": [ 0.515, -0.643, 0.567 ], "y_axis": [ -0.795, -0.606, 0.036 ], "z_axis": [ 0.320, -0.469, -0.823 ], "quaternion": [ 0.147, 0.858, -0.419, 0.259 ] } }, { "index": 585, "nt1": "///A/1302", "nt2": "///A/2046", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 155.868, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.693, "chi2": -166.376, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.107, "C1C1_dist": 10.728, "N1N9_dist": 8.968, "C6C8_dist": 9.891, "CNNC_torsion": -6.775, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.06],N1-N3(imino)[3.00]", "interBase_angle": 4.903, "planarity": 0.190, "simple_Shear": 0.227, "simple_Stretch": -0.064, "simple_Buckle": -1.928, "simple_Propeller": 4.508, "bp_simpleParams": [ 0.227, -0.064, 0.821, -1.928, 4.508, 0.538 ], "bp_params": [ 0.225, -0.071, 0.821, -1.800, 4.561, 0.539 ], "frame": { "rmsd": null, "origin": [ 160.094, 165.757, 196.661 ], "x_axis": [ 0.409, 0.900, 0.153 ], "y_axis": [ -0.802, 0.274, 0.530 ], "z_axis": [ 0.435, -0.339, 0.834 ], "quaternion": [ 0.793, 0.274, 0.089, 0.536 ] } }, { "index": 586, "nt1": "///A/1303", "nt2": "///A/2045", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.499, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 71.233, "chi2": -168.117, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 46.875, "C1C1_dist": 9.424, "N1N9_dist": 7.948, "C6C8_dist": 9.189, "CNNC_torsion": -7.579, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N3(imino)[3.80],N3(imino)-O4(carbonyl)[3.61]", "interBase_angle": 6.671, "planarity": 0.177, "simple_Shear": 2.206, "simple_Stretch": -0.661, "simple_Buckle": -2.493, "simple_Propeller": 6.188, "bp_simpleParams": [ 2.206, -0.661, 0.929, -2.493, 6.188, 10.045 ], "bp_params": [ 2.008, -1.129, 0.929, -1.073, 6.584, 10.061 ], "frame": { "rmsd": null, "origin": [ 162.678, 164.480, 198.722 ], "x_axis": [ -0.306, 0.855, 0.418 ], "y_axis": [ -0.867, -0.431, 0.249 ], "z_axis": [ 0.393, -0.287, 0.874 ], "quaternion": [ 0.533, 0.251, -0.012, 0.808 ] } }, { "index": 587, "nt1": "///A/1304", "nt2": "///A/2044", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -131.436, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 92.407, "chi2": -134.859, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 5.805, "C1C1_dist": 9.665, "N1N9_dist": 8.372, "C6C8_dist": 8.760, "CNNC_torsion": -147.026, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.84],N3-N6(amino)[2.90]", "interBase_angle": 32.154, "planarity": 0.422, "simple_Shear": 7.166, "simple_Stretch": 2.400, "simple_Buckle": -1.143, "simple_Propeller": -32.133, "bp_simpleParams": [ 7.166, 2.400, 0.905, -1.143, -32.133, -9.961 ], "bp_params": [ 6.457, -3.928, 0.905, -25.274, -19.877, -9.876 ], "frame": { "rmsd": null, "origin": [ 165.928, 163.434, 202.056 ], "x_axis": [ -0.984, -0.004, 0.181 ], "y_axis": [ 0.046, -0.973, 0.226 ], "z_axis": [ 0.175, 0.230, 0.957 ], "quaternion": [ -0.013, 0.090, 0.115, 0.989 ] } }, { "index": 588, "nt1": "///A/1305", "nt2": "///A/2043", "bp": "A+A", "name": "--", "Saenger": "02-II", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": -125.749, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 15.538, "chi2": -131.159, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 13.937, "C1C1_dist": 11.629, "N1N9_dist": 8.819, "C6C8_dist": 6.988, "CNNC_torsion": -131.490, "hbonds_num": 2, "hbonds_desc": "N7-N6(amino)[3.87],N6(amino)-N7[3.27]", "interBase_angle": 52.841, "planarity": 0.581, "simple_Shear": -7.499, "simple_Stretch": 1.314, "simple_Buckle": -16.388, "simple_Propeller": -50.235, "bp_simpleParams": [ -7.499, 1.314, 1.122, -16.388, -50.235, -175.038 ], "bp_params": [ -5.488, 5.277, 1.122, -41.060, -33.260, -174.895 ], "frame": { "rmsd": null, "origin": [ 165.914, 163.268, 206.127 ], "x_axis": [ 0.417, -0.906, -0.073 ], "y_axis": [ -0.784, -0.399, 0.476 ], "z_axis": [ -0.460, -0.141, -0.876 ], "quaternion": [ 0.188, 0.820, -0.515, -0.163 ] } }, { "index": 589, "nt1": "///A/1306", "nt2": "///A/1307", "bp": "G+U", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -106.762, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 149.360, "chi2": 170.621, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.832, "C1C1_dist": 6.806, "N1N9_dist": 7.270, "C6C8_dist": 7.191, "CNNC_torsion": 15.318, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-OP2[2.57],N2(amino)-O4(carbonyl)[3.90]", "interBase_angle": 5.287, "planarity": 0.150, "simple_Shear": 0.409, "simple_Stretch": 9.204, "simple_Buckle": -2.180, "simple_Propeller": 4.816, "bp_simpleParams": [ 0.409, 9.204, 0.520, -2.180, 4.816, 24.906 ], "bp_params": [ 9.048, 1.740, 0.520, 4.179, 3.239, 24.899 ], "frame": { "rmsd": null, "origin": [ 161.751, 163.384, 211.231 ], "x_axis": [ -0.953, 0.121, 0.277 ], "y_axis": [ -0.092, -0.989, 0.118 ], "z_axis": [ 0.288, 0.087, 0.954 ], "quaternion": [ 0.054, 0.143, 0.052, 0.987 ] } }, { "index": 590, "nt1": "///A/1307", "nt2": "///A/2042", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": 170.621, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 29.894, "chi2": -160.990, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 18.751, "C1C1_dist": 10.006, "N1N9_dist": 7.424, "C6C8_dist": 6.509, "CNNC_torsion": -176.507, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.83],N3(imino)-N7[3.08]", "interBase_angle": 7.816, "planarity": 0.156, "simple_Shear": 4.451, "simple_Stretch": 1.292, "simple_Buckle": 4.642, "simple_Propeller": -6.287, "bp_simpleParams": [ 4.451, 1.292, 0.347, 4.642, -6.287, -93.207 ], "bp_params": [ 4.192, -1.975, 0.347, -0.678, -7.786, -93.338 ], "frame": { "rmsd": null, "origin": [ 168.265, 163.750, 208.875 ], "x_axis": [ -0.858, -0.458, 0.233 ], "y_axis": [ 0.448, -0.889, -0.097 ], "z_axis": [ 0.251, 0.021, 0.968 ], "quaternion": [ -0.235, 0.126, -0.020, 0.964 ] } }, { "index": 591, "nt1": "///A/1308", "nt2": "///A/2041", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -169.923, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 7.555, "chi2": -156.949, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 92.715, "C1C1_dist": 10.024, "N1N9_dist": 8.738, "C6C8_dist": 9.136, "CNNC_torsion": -114.214, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[2.86],N6(amino)-N3[3.06]", "interBase_angle": 3.492, "planarity": 0.111, "simple_Shear": -7.337, "simple_Stretch": 2.623, "simple_Buckle": -0.493, "simple_Propeller": 3.458, "bp_simpleParams": [ -7.337, 2.623, 0.501, -0.493, 3.458, -7.785 ], "bp_params": [ -6.826, -3.757, 0.501, -2.916, 1.922, -7.783 ], "frame": { "rmsd": null, "origin": [ 165.499, 162.704, 213.827 ], "x_axis": [ -0.783, -0.384, 0.490 ], "y_axis": [ 0.342, -0.923, -0.176 ], "z_axis": [ 0.520, 0.030, 0.854 ], "quaternion": [ -0.192, 0.268, -0.039, 0.943 ] } }, { "index": 592, "nt1": "///A/1309", "nt2": "///A/1364", "bp": "G+C", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -173.915, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 87.063, "chi2": -140.838, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 40.031, "C1C1_dist": 9.370, "N1N9_dist": 8.519, "C6C8_dist": 10.348, "CNNC_torsion": 170.453, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O2(carbonyl)[3.12]", "interBase_angle": 42.528, "planarity": 0.423, "simple_Shear": 5.396, "simple_Stretch": 3.132, "simple_Buckle": 39.525, "simple_Propeller": -15.698, "bp_simpleParams": [ 5.396, 3.132, 2.023, 39.525, -15.698, -133.550 ], "bp_params": [ -0.563, -6.214, 2.023, -35.374, -23.608, -132.356 ], "frame": { "rmsd": null, "origin": [ 168.387, 166.438, 216.493 ], "x_axis": [ 0.520, -0.594, -0.614 ], "y_axis": [ 0.737, 0.675, -0.029 ], "z_axis": [ 0.432, -0.437, 0.788 ], "quaternion": [ 0.864, 0.118, 0.303, -0.385 ] } }, { "index": 593, "nt1": "///A/1309", "nt2": "///A/2040", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.915, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 43.157, "chi2": -163.390, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 63.448, "C1C1_dist": 10.673, "N1N9_dist": 8.946, "C6C8_dist": 9.807, "CNNC_torsion": -1.579, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.98],N1(imino)-O2(carbonyl)[3.01]", "interBase_angle": 3.769, "planarity": 0.085, "simple_Shear": -1.914, "simple_Stretch": -0.009, "simple_Buckle": 2.021, "simple_Propeller": 3.181, "bp_simpleParams": [ -1.914, -0.009, 0.391, 2.021, 3.181, -2.879 ], "bp_params": [ -1.879, -0.367, 0.391, 1.389, 3.504, -2.880 ], "frame": { "rmsd": null, "origin": [ 166.195, 163.123, 217.381 ], "x_axis": [ -0.252, -0.963, 0.094 ], "y_axis": [ 0.804, -0.262, -0.533 ], "z_axis": [ 0.538, -0.058, 0.841 ], "quaternion": [ 0.576, -0.206, 0.193, -0.767 ] } }, { "index": 594, "nt1": "///A/1310", "nt2": "///A/2039", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.833, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.454, "chi2": -168.767, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.418, "C1C1_dist": 10.690, "N1N9_dist": 8.975, "C6C8_dist": 9.924, "CNNC_torsion": -2.388, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.82],N3-N1(imino)[2.94],N4(amino)-O6(carbonyl)[2.98]", "interBase_angle": 3.105, "planarity": 0.104, "simple_Shear": 0.173, "simple_Stretch": -0.100, "simple_Buckle": 2.250, "simple_Propeller": 2.140, "bp_simpleParams": [ 0.173, -0.100, 0.331, 2.250, 2.140, 0.807 ], "bp_params": [ 0.171, -0.102, 0.331, 2.278, 2.110, 0.807 ], "frame": { "rmsd": null, "origin": [ 166.525, 162.394, 221.089 ], "x_axis": [ 0.299, -0.899, -0.321 ], "y_axis": [ 0.793, 0.421, -0.440 ], "z_axis": [ 0.530, -0.123, 0.839 ], "quaternion": [ 0.800, -0.099, 0.266, -0.529 ] } }, { "index": 595, "nt1": "///A/1311", "nt2": "///A/1660", "bp": "G+C", "name": "rWC", "Saenger": "22-XXII", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -120.983, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 32.728, "chi2": -137.678, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 57.724, "C1C1_dist": 10.691, "N1N9_dist": 8.897, "C6C8_dist": 10.240, "CNNC_torsion": -163.293, "hbonds_num": 2, "hbonds_desc": "N1(imino)-O2(carbonyl)[3.00],N2(amino)-N3[3.10]", "interBase_angle": 18.393, "planarity": 0.217, "simple_Shear": 2.943, "simple_Stretch": 1.003, "simple_Buckle": 14.646, "simple_Propeller": 11.126, "bp_simpleParams": [ 2.943, 1.003, 0.867, 14.646, 11.126, 155.544 ], "bp_params": [ -0.055, 3.109, 0.867, -6.091, 17.355, 155.782 ], "frame": { "rmsd": null, "origin": [ 174.339, 176.191, 216.535 ], "x_axis": [ -0.326, 0.878, -0.350 ], "y_axis": [ -0.746, -0.012, 0.666 ], "z_axis": [ 0.580, 0.478, 0.659 ], "quaternion": [ 0.575, 0.082, 0.405, 0.707 ] } }, { "index": 596, "nt1": "///A/1315", "nt2": "///A/1333", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.925, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.962, "chi2": 174.545, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.127, "C1C1_dist": 10.733, "N1N9_dist": 8.917, "C6C8_dist": 9.845, "CNNC_torsion": -2.912, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.93],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 7.020, "planarity": 0.199, "simple_Shear": -0.176, "simple_Stretch": -0.176, "simple_Buckle": -4.393, "simple_Propeller": 5.475, "bp_simpleParams": [ -0.176, -0.176, 0.591, -4.393, 5.475, 1.079 ], "bp_params": [ -0.174, -0.178, 0.591, -4.468, 5.415, 1.079 ], "frame": { "rmsd": null, "origin": [ 176.639, 166.864, 245.311 ], "x_axis": [ -0.285, 0.958, -0.033 ], "y_axis": [ -0.035, -0.045, -0.998 ], "z_axis": [ -0.958, -0.283, 0.046 ], "quaternion": [ 0.423, -0.423, -0.546, 0.586 ] } }, { "index": 597, "nt1": "///A/1316", "nt2": "///A/1332", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.574, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.218, "chi2": -158.968, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.257, "C1C1_dist": 10.469, "N1N9_dist": 8.808, "C6C8_dist": 9.777, "CNNC_torsion": -2.177, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.96],N1-N3(imino)[2.89]", "interBase_angle": 8.429, "planarity": 0.224, "simple_Shear": 0.061, "simple_Stretch": -0.205, "simple_Buckle": -3.048, "simple_Propeller": 7.858, "bp_simpleParams": [ 0.061, -0.205, 0.869, -3.048, 7.858, 1.875 ], "bp_params": [ 0.059, -0.206, 0.869, -2.965, 7.890, 1.879 ], "frame": { "rmsd": null, "origin": [ 173.520, 166.363, 247.275 ], "x_axis": [ -0.213, 0.820, -0.531 ], "y_axis": [ 0.120, -0.518, -0.847 ], "z_axis": [ -0.970, -0.245, 0.012 ], "quaternion": [ 0.265, -0.569, -0.414, 0.660 ] } }, { "index": 598, "nt1": "///A/1317", "nt2": "///A/1331", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.569, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.149, "chi2": -167.295, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.359, "C1C1_dist": 10.512, "N1N9_dist": 8.810, "C6C8_dist": 9.775, "CNNC_torsion": -4.735, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 6.821, "planarity": 0.222, "simple_Shear": -0.205, "simple_Stretch": -0.281, "simple_Buckle": 2.053, "simple_Propeller": 6.505, "bp_simpleParams": [ -0.205, -0.281, 0.941, 2.053, 6.505, 2.689 ], "bp_params": [ -0.201, -0.284, 0.941, 1.953, 6.536, 2.693 ], "frame": { "rmsd": null, "origin": [ 170.128, 167.164, 248.180 ], "x_axis": [ -0.031, 0.481, -0.876 ], "y_axis": [ 0.194, -0.857, -0.477 ], "z_axis": [ -0.980, -0.185, -0.067 ], "quaternion": [ -0.106, 0.688, 0.245, -0.675 ] } }, { "index": 599, "nt1": "///A/1318", "nt2": "///A/1330", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.983, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.936, "chi2": -173.834, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.285, "C1C1_dist": 10.624, "N1N9_dist": 8.854, "C6C8_dist": 9.789, "CNNC_torsion": -4.703, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 5.686, "planarity": 0.172, "simple_Shear": -0.188, "simple_Stretch": -0.250, "simple_Buckle": 2.841, "simple_Propeller": 4.925, "bp_simpleParams": [ -0.188, -0.250, 0.774, 2.841, 4.925, 0.909 ], "bp_params": [ -0.185, -0.253, 0.774, 2.773, 4.963, 0.910 ], "frame": { "rmsd": null, "origin": [ 166.743, 168.369, 248.418 ], "x_axis": [ 0.132, -0.070, -0.989 ], "y_axis": [ 0.164, -0.982, 0.091 ], "z_axis": [ -0.978, -0.174, -0.118 ], "quaternion": [ 0.089, 0.747, 0.031, -0.658 ] } }, { "index": 600, "nt1": "///A/1319", "nt2": "///A/1329", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 177.572, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.368, "chi2": -163.378, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.975, "C1C1_dist": 10.742, "N1N9_dist": 8.914, "C6C8_dist": 9.800, "CNNC_torsion": -3.176, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.87],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 11.622, "planarity": 0.125, "simple_Shear": -0.204, "simple_Stretch": -0.173, "simple_Buckle": -9.818, "simple_Propeller": -6.219, "bp_simpleParams": [ -0.204, -0.173, -0.279, -9.818, -6.219, -1.064 ], "bp_params": [ -0.201, -0.176, -0.279, -9.739, -6.342, -1.062 ], "frame": { "rmsd": null, "origin": [ 163.240, 169.701, 246.887 ], "x_axis": [ 0.294, -0.594, -0.749 ], "y_axis": [ -0.108, -0.799, 0.591 ], "z_axis": [ -0.950, -0.093, -0.299 ], "quaternion": [ 0.221, 0.773, -0.227, -0.549 ] } }, { "index": 601, "nt1": "///A/1320", "nt2": "///A/1328", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -155.280, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.943, "chi2": -165.420, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.576, "C1C1_dist": 10.605, "N1N9_dist": 8.882, "C6C8_dist": 9.817, "CNNC_torsion": 0.441, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 13.857, "planarity": 0.169, "simple_Shear": -0.182, "simple_Stretch": -0.172, "simple_Buckle": -12.404, "simple_Propeller": -6.176, "bp_simpleParams": [ -0.182, -0.172, -0.770, -12.404, -6.176, 1.049 ], "bp_params": [ -0.181, -0.174, -0.770, -12.345, -6.294, 1.045 ], "frame": { "rmsd": null, "origin": [ 160.775, 169.820, 243.985 ], "x_axis": [ 0.290, -0.935, -0.202 ], "y_axis": [ -0.384, -0.307, 0.871 ], "z_axis": [ -0.877, -0.175, -0.448 ], "quaternion": [ 0.365, 0.715, -0.461, -0.377 ] } }, { "index": 602, "nt1": "///A/1321", "nt2": "///A/1325", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -157.398, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 32.389, "chi2": -83.621, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 12.472, "C1C1_dist": 10.297, "N1N9_dist": 7.698, "C6C8_dist": 6.766, "CNNC_torsion": -172.347, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.82],N3(imino)-N7[3.20]", "interBase_angle": 17.619, "planarity": 0.221, "simple_Shear": 3.979, "simple_Stretch": 1.109, "simple_Buckle": -4.607, "simple_Propeller": 17.006, "bp_simpleParams": [ 3.979, 1.109, 0.349, -4.607, 17.006, -91.670 ], "bp_params": [ 3.865, -1.457, 0.349, 6.364, 16.429, -92.172 ], "frame": { "rmsd": null, "origin": [ 158.354, 170.580, 240.943 ], "x_axis": [ -0.355, -0.501, 0.789 ], "y_axis": [ -0.242, 0.865, 0.440 ], "z_axis": [ -0.903, -0.035, -0.428 ], "quaternion": [ 0.520, 0.228, -0.814, -0.124 ] } }, { "index": 603, "nt1": "///A/1322", "nt2": "///A/1368", "bp": "G+U", "name": "--", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -164.925, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 138.068, "chi2": 50.229, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 52.921, "C1C1_dist": 5.676, "N1N9_dist": 5.962, "C6C8_dist": 5.949, "CNNC_torsion": 46.587, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O4(carbonyl)[2.64]", "interBase_angle": 29.879, "planarity": 0.457, "simple_Shear": 0.592, "simple_Stretch": 7.977, "simple_Buckle": 4.336, "simple_Propeller": 29.562, "bp_simpleParams": [ 0.592, 7.977, 0.019, 4.336, 29.562, 32.154 ], "bp_params": [ 7.858, 1.498, 0.019, 29.664, 3.576, 31.151 ], "frame": { "rmsd": null, "origin": [ 154.729, 167.135, 239.692 ], "x_axis": [ -0.007, -0.579, 0.815 ], "y_axis": [ -0.154, 0.806, 0.571 ], "z_axis": [ -0.988, -0.122, -0.095 ], "quaternion": [ 0.653, 0.265, -0.691, -0.163 ] } }, { "index": 604, "nt1": "///A/1334", "nt2": "///A/1690", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.920, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.474, "chi2": -154.350, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.269, "C1C1_dist": 10.490, "N1N9_dist": 8.934, "C6C8_dist": 10.090, "CNNC_torsion": -24.300, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.48],N3-N1(imino)[3.07],N4(amino)-O6(carbonyl)[3.67]", "interBase_angle": 20.503, "planarity": 0.300, "simple_Shear": 0.127, "simple_Stretch": 0.080, "simple_Buckle": -2.977, "simple_Propeller": -20.286, "bp_simpleParams": [ 0.127, 0.080, 0.940, -2.977, -20.286, 8.951 ], "bp_params": [ 0.127, 0.079, 0.940, -3.146, -20.260, 9.089 ], "frame": { "rmsd": null, "origin": [ 178.880, 169.947, 244.269 ], "x_axis": [ -0.406, 0.601, 0.688 ], "y_axis": [ 0.260, -0.646, 0.718 ], "z_axis": [ 0.876, 0.471, 0.106 ], "quaternion": [ 0.116, 0.532, 0.405, 0.734 ] } }, { "index": 605, "nt1": "///A/1335", "nt2": "///A/1689", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.961, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.522, "chi2": -157.126, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.740, "C1C1_dist": 10.481, "N1N9_dist": 8.839, "C6C8_dist": 9.790, "CNNC_torsion": -0.535, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.00],N1-N3(imino)[2.91]", "interBase_angle": 15.820, "planarity": 0.223, "simple_Shear": 0.066, "simple_Stretch": -0.153, "simple_Buckle": -12.129, "simple_Propeller": -10.157, "bp_simpleParams": [ 0.066, -0.153, -1.078, -12.129, -10.157, 1.761 ], "bp_params": [ 0.064, -0.154, -1.078, -12.301, -9.948, 1.757 ], "frame": { "rmsd": null, "origin": [ 182.048, 172.672, 243.076 ], "x_axis": [ -0.257, 0.160, 0.953 ], "y_axis": [ 0.434, -0.862, 0.262 ], "z_axis": [ 0.863, 0.481, 0.152 ], "quaternion": [ -0.091, 0.603, 0.246, 0.753 ] } }, { "index": 606, "nt1": "///A/1336", "nt2": "///A/1688", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.076, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.158, "chi2": -154.927, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.884, "C1C1_dist": 10.402, "N1N9_dist": 8.755, "C6C8_dist": 9.726, "CNNC_torsion": 6.846, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.94],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 7.784, "planarity": 0.325, "simple_Shear": 0.173, "simple_Stretch": -0.333, "simple_Buckle": -7.538, "simple_Propeller": -1.941, "bp_simpleParams": [ 0.173, -0.333, -1.099, -7.538, -1.941, 2.012 ], "bp_params": [ 0.169, -0.335, -1.099, -7.564, -1.836, 2.007 ], "frame": { "rmsd": null, "origin": [ 184.784, 175.547, 242.661 ], "x_axis": [ -0.010, -0.316, 0.949 ], "y_axis": [ 0.426, -0.860, -0.282 ], "z_axis": [ 0.904, 0.402, 0.144 ], "quaternion": [ -0.262, 0.653, 0.042, 0.709 ] } }, { "index": 607, "nt1": "///A/1337", "nt2": "///A/1687", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.872, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.534, "chi2": -161.071, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.525, "C1C1_dist": 10.676, "N1N9_dist": 8.944, "C6C8_dist": 9.890, "CNNC_torsion": 4.814, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 8.716, "planarity": 0.101, "simple_Shear": 0.160, "simple_Stretch": -0.124, "simple_Buckle": -3.521, "simple_Propeller": 7.973, "bp_simpleParams": [ 0.160, -0.124, -0.029, -3.521, 7.973, 0.520 ], "bp_params": [ 0.158, -0.126, -0.029, -3.432, 8.011, 0.521 ], "frame": { "rmsd": null, "origin": [ 187.514, 178.158, 243.516 ], "x_axis": [ 0.075, -0.722, 0.687 ], "y_axis": [ 0.276, -0.647, -0.710 ], "z_axis": [ 0.958, 0.244, 0.151 ], "quaternion": [ -0.380, 0.627, -0.178, 0.656 ] } }, { "index": 608, "nt1": "///A/1338", "nt2": "///A/1686", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -171.649, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 93.429, "chi2": -170.067, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 5.369, "C1C1_dist": 9.945, "N1N9_dist": 8.676, "C6C8_dist": 9.043, "CNNC_torsion": -145.411, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[3.35],N2(amino)-N7[2.79],N3-N6(amino)[3.08]", "interBase_angle": 12.393, "planarity": 0.168, "simple_Shear": 7.390, "simple_Stretch": 2.676, "simple_Buckle": 1.886, "simple_Propeller": 12.248, "bp_simpleParams": [ 7.390, 2.676, -0.073, 1.886, 12.248, -9.532 ], "bp_params": [ 6.840, -3.871, -0.073, 10.525, 6.543, -9.508 ], "frame": { "rmsd": null, "origin": [ 190.281, 179.636, 244.530 ], "x_axis": [ 0.191, -0.962, -0.196 ], "y_axis": [ 0.145, 0.225, -0.964 ], "z_axis": [ 0.971, 0.156, 0.183 ], "quaternion": [ 0.632, -0.443, 0.461, -0.438 ] } }, { "index": 609, "nt1": "///A/1340", "nt2": "///A/1686", "bp": "A-A", "name": "--", "Saenger": "05-V", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": 62.673, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 15.841, "chi2": -170.067, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 26.644, "C1C1_dist": 12.979, "N1N9_dist": 10.303, "C6C8_dist": 9.120, "CNNC_torsion": -135.393, "hbonds_num": 2, "hbonds_desc": "N7-N6(amino)[3.99],N6(amino)-N1[3.55]", "interBase_angle": 54.947, "planarity": 0.634, "simple_Shear": -3.065, "simple_Stretch": 3.298, "simple_Buckle": 8.489, "simple_Propeller": 54.287, "bp_simpleParams": [ -3.065, 3.298, 2.268, 8.489, 54.287, -88.657 ], "bp_params": [ -4.308, 1.307, 2.268, -20.569, 50.952, -93.582 ], "frame": { "rmsd": null, "origin": [ 191.674, 184.594, 241.980 ], "x_axis": [ -0.290, -0.843, 0.453 ], "y_axis": [ 0.031, -0.482, -0.876 ], "z_axis": [ 0.956, -0.240, 0.166 ], "quaternion": [ -0.314, 0.506, -0.401, 0.696 ] } }, { "index": 610, "nt1": "///A/1342", "nt2": "///A/1670", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 174.146, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.007, "chi2": 173.243, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.135, "C1C1_dist": 10.879, "N1N9_dist": 8.947, "C6C8_dist": 9.823, "CNNC_torsion": 4.745, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.83]", "interBase_angle": 16.382, "planarity": 0.205, "simple_Shear": -0.223, "simple_Stretch": -0.176, "simple_Buckle": 5.301, "simple_Propeller": 15.501, "bp_simpleParams": [ -0.223, -0.176, 0.444, 5.301, 15.501, 0.100 ], "bp_params": [ -0.221, -0.179, 0.444, 5.063, 15.580, 0.101 ], "frame": { "rmsd": null, "origin": [ 192.045, 189.184, 238.805 ], "x_axis": [ 0.283, -0.169, -0.944 ], "y_axis": [ -0.502, -0.865, 0.004 ], "z_axis": [ -0.818, 0.472, -0.329 ], "quaternion": [ -0.149, 0.787, -0.213, -0.560 ] } }, { "index": 611, "nt1": "///A/1343", "nt2": "///A/1669", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -130.676, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 57.708, "chi2": -167.480, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.641, "C1C1_dist": 10.405, "N1N9_dist": 8.758, "C6C8_dist": 9.777, "CNNC_torsion": 17.072, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.85],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 22.575, "planarity": 0.326, "simple_Shear": 0.211, "simple_Stretch": -0.162, "simple_Buckle": 12.535, "simple_Propeller": 18.775, "bp_simpleParams": [ 0.211, -0.162, -0.081, 12.535, 18.775, 3.976 ], "bp_params": [ 0.206, -0.168, -0.081, 12.972, 18.476, 4.003 ], "frame": { "rmsd": null, "origin": [ 190.954, 192.692, 237.367 ], "x_axis": [ 0.100, -0.671, -0.735 ], "y_axis": [ -0.634, -0.612, 0.472 ], "z_axis": [ -0.767, 0.419, -0.487 ], "quaternion": [ 0.018, 0.742, -0.440, -0.506 ] } }, { "index": 612, "nt1": "///A/1344", "nt2": "///A/1668", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -96.718, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 51.674, "chi2": 174.077, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.136, "C1C1_dist": 10.704, "N1N9_dist": 8.823, "C6C8_dist": 9.570, "CNNC_torsion": 25.812, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.87],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 30.581, "planarity": 0.404, "simple_Shear": -0.132, "simple_Stretch": -0.244, "simple_Buckle": 27.138, "simple_Propeller": 14.098, "bp_simpleParams": [ -0.132, -0.244, -1.399, 27.138, 14.098, -8.094 ], "bp_params": [ -0.132, -0.244, -1.399, 27.174, 14.028, -7.931 ], "frame": { "rmsd": null, "origin": [ 190.072, 194.809, 234.834 ], "x_axis": [ -0.192, -0.932, -0.307 ], "y_axis": [ -0.728, -0.074, 0.681 ], "z_axis": [ -0.658, 0.355, -0.665 ], "quaternion": [ -0.131, -0.622, 0.668, 0.388 ] } }, { "index": 613, "nt1": "///A/1345", "nt2": "///A/1668", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -72.821, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 72.074, "chi2": 174.077, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.806, "C1C1_dist": 8.772, "N1N9_dist": 7.582, "C6C8_dist": 8.726, "CNNC_torsion": 2.856, "hbonds_num": 1, "hbonds_desc": "N3(imino)*N1(imino)[3.11]", "interBase_angle": 57.575, "planarity": 0.921, "simple_Shear": 0.574, "simple_Stretch": -0.035, "simple_Buckle": 53.508, "simple_Propeller": 21.256, "bp_simpleParams": [ 0.574, -0.035, 0.771, 53.508, 21.256, 21.456 ], "bp_params": [ 0.568, -0.088, 0.771, 55.606, 14.928, 19.228 ], "frame": { "rmsd": null, "origin": [ 189.257, 194.805, 234.066 ], "x_axis": [ -0.318, -0.944, -0.090 ], "y_axis": [ -0.796, 0.214, 0.566 ], "z_axis": [ -0.515, 0.251, -0.820 ], "quaternion": [ -0.139, -0.567, 0.767, 0.266 ] } }, { "index": 614, "nt1": "///A/1347", "nt2": "///A/1651", "bp": "A+G", "name": "--", "Saenger": "--", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": -172.536, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 4.487, "chi2": 21.517, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 58.429, "C1C1_dist": 9.676, "N1N9_dist": 7.540, "C6C8_dist": 5.363, "CNNC_torsion": -149.368, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.85]", "interBase_angle": 24.606, "planarity": 0.378, "simple_Shear": -8.721, "simple_Stretch": 4.282, "simple_Buckle": -23.781, "simple_Propeller": 6.316, "bp_simpleParams": [ -8.721, 4.282, -0.648, -23.781, 6.316, -127.863 ], "bp_params": [ -8.183, 5.237, -0.648, -22.948, 8.878, -127.079 ], "frame": { "rmsd": null, "origin": [ 181.478, 196.438, 229.215 ], "x_axis": [ 0.085, 0.761, 0.644 ], "y_axis": [ 0.179, 0.624, -0.761 ], "z_axis": [ -0.980, 0.180, -0.083 ], "quaternion": [ 0.637, -0.369, -0.637, 0.228 ] } }, { "index": 615, "nt1": "///A/1348", "nt2": "///A/1650", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.257, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.363, "chi2": -149.701, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.010, "C1C1_dist": 10.609, "N1N9_dist": 8.904, "C6C8_dist": 9.818, "CNNC_torsion": 9.542, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.95],N2(amino)-O2(carbonyl)[2.83]", "interBase_angle": 11.408, "planarity": 0.209, "simple_Shear": -0.103, "simple_Stretch": -0.220, "simple_Buckle": -11.100, "simple_Propeller": 2.633, "bp_simpleParams": [ -0.103, -0.220, -1.129, -11.100, 2.633, -0.856 ], "bp_params": [ -0.102, -0.221, -1.129, -11.120, 2.545, -0.852 ], "frame": { "rmsd": null, "origin": [ 177.742, 197.297, 228.543 ], "x_axis": [ 0.150, 0.783, 0.604 ], "y_axis": [ 0.181, 0.579, -0.795 ], "z_axis": [ -0.972, 0.229, -0.055 ], "quaternion": [ 0.647, -0.396, -0.609, 0.232 ] } }, { "index": 616, "nt1": "///A/1349", "nt2": "///A/1649", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.038, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.219, "chi2": -163.355, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.004, "C1C1_dist": 10.706, "N1N9_dist": 8.936, "C6C8_dist": 9.845, "CNNC_torsion": 4.865, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.93],N2(amino)-O2(carbonyl)[2.82]", "interBase_angle": 4.023, "planarity": 0.154, "simple_Shear": -0.146, "simple_Stretch": -0.197, "simple_Buckle": -3.984, "simple_Propeller": -0.562, "bp_simpleParams": [ -0.146, -0.197, -0.804, -3.984, -0.562, -0.528 ], "bp_params": [ -0.144, -0.198, -0.804, -3.978, -0.601, -0.528 ], "frame": { "rmsd": null, "origin": [ 174.282, 198.523, 229.963 ], "x_axis": [ 0.378, 0.906, 0.188 ], "y_axis": [ 0.090, 0.166, -0.982 ], "z_axis": [ -0.921, 0.388, -0.018 ], "quaternion": [ 0.618, -0.555, -0.449, 0.331 ] } }, { "index": 617, "nt1": "///A/1352", "nt2": "///A/1648", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 85.482, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 46.347, "chi2": 177.215, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.926, "C1C1_dist": 10.877, "N1N9_dist": 8.965, "C6C8_dist": 9.842, "CNNC_torsion": 7.355, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.92],O4(carbonyl)-N6(amino)[3.00]", "interBase_angle": 3.839, "planarity": 0.136, "simple_Shear": -0.200, "simple_Stretch": -0.092, "simple_Buckle": 1.166, "simple_Propeller": 3.657, "bp_simpleParams": [ -0.200, -0.092, -0.626, 1.166, 3.657, -1.555 ], "bp_params": [ -0.198, -0.097, -0.626, 1.076, 3.685, -1.556 ], "frame": { "rmsd": null, "origin": [ 170.404, 197.714, 231.677 ], "x_axis": [ 0.333, 0.589, -0.737 ], "y_axis": [ -0.297, -0.676, -0.675 ], "z_axis": [ -0.895, 0.443, -0.051 ], "quaternion": [ -0.389, 0.718, 0.102, -0.568 ] } }, { "index": 618, "nt1": "///A/1353", "nt2": "///A/1377", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 174.255, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 48.734, "chi2": -161.459, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.039, "C1C1_dist": 10.768, "N1N9_dist": 8.949, "C6C8_dist": 9.880, "CNNC_torsion": -3.898, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 5.161, "planarity": 0.082, "simple_Shear": 0.093, "simple_Stretch": -0.133, "simple_Buckle": 0.766, "simple_Propeller": -5.104, "bp_simpleParams": [ 0.093, -0.133, -0.219, 0.766, -5.104, 0.434 ], "bp_params": [ 0.092, -0.133, -0.219, 0.739, -5.108, 0.434 ], "frame": { "rmsd": null, "origin": [ 162.900, 197.416, 236.857 ], "x_axis": [ -0.375, 0.088, -0.923 ], "y_axis": [ 0.806, -0.461, -0.371 ], "z_axis": [ -0.458, -0.883, 0.102 ], "quaternion": [ -0.258, -0.496, -0.450, 0.696 ] } }, { "index": 619, "nt1": "///A/1354", "nt2": "///A/1376", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.661, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.156, "chi2": 173.991, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.604, "C1C1_dist": 10.887, "N1N9_dist": 8.985, "C6C8_dist": 9.848, "CNNC_torsion": -0.243, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.83],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 6.013, "planarity": 0.093, "simple_Shear": 0.146, "simple_Stretch": -0.146, "simple_Buckle": -5.798, "simple_Propeller": 1.593, "bp_simpleParams": [ 0.146, -0.146, -0.086, -5.798, 1.593, -2.033 ], "bp_params": [ 0.145, -0.147, -0.086, -5.783, 1.646, -2.031 ], "frame": { "rmsd": null, "origin": [ 159.436, 195.103, 238.139 ], "x_axis": [ 0.172, -0.133, -0.976 ], "y_axis": [ 0.922, -0.326, 0.207 ], "z_axis": [ -0.346, -0.936, 0.067 ], "quaternion": [ 0.478, 0.598, 0.330, -0.552 ] } }, { "index": 620, "nt1": "///A/1354", "nt2": "///A/1431", "bp": "C-G", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -169.661, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 161.918, "chi2": -148.573, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 93.496, "C1C1_dist": 6.174, "N1N9_dist": 7.762, "C6C8_dist": 10.168, "CNNC_torsion": -26.924, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N2(amino)[2.77],O2'(hydroxyl)-N3[2.51],O2(carbonyl)-N2(amino)[2.99]", "interBase_angle": 15.961, "planarity": 0.197, "simple_Shear": 0.824, "simple_Stretch": 8.301, "simple_Buckle": 2.579, "simple_Propeller": -15.751, "bp_simpleParams": [ 0.824, 8.301, 1.204, 2.579, -15.751, 156.325 ], "bp_params": [ 3.698, 7.478, 1.204, -3.156, -15.646, 156.530 ], "frame": { "rmsd": null, "origin": [ 159.941, 195.730, 242.190 ], "x_axis": [ -0.840, 0.378, -0.388 ], "y_axis": [ 0.338, -0.195, -0.921 ], "z_axis": [ -0.424, -0.905, 0.036 ], "quaternion": [ 0.014, -0.282, -0.634, 0.719 ] } }, { "index": 621, "nt1": "///A/1355", "nt2": "///A/1375", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.170, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.703, "chi2": 168.436, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.433, "C1C1_dist": 10.734, "N1N9_dist": 8.905, "C6C8_dist": 9.781, "CNNC_torsion": -4.495, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.85],O4(carbonyl)-N6(amino)[2.90]", "interBase_angle": 1.078, "planarity": 0.074, "simple_Shear": -0.073, "simple_Stretch": -0.148, "simple_Buckle": 0.042, "simple_Propeller": 1.077, "bp_simpleParams": [ -0.073, -0.148, 0.339, 0.042, 1.077, -2.711 ], "bp_params": [ -0.071, -0.149, 0.339, 0.029, 1.078, -2.711 ], "frame": { "rmsd": null, "origin": [ 157.174, 192.554, 237.984 ], "x_axis": [ 0.673, -0.213, -0.708 ], "y_axis": [ 0.690, -0.163, 0.705 ], "z_axis": [ -0.266, -0.963, 0.038 ], "quaternion": [ 0.622, 0.671, 0.178, -0.363 ] } }, { "index": 622, "nt1": "///A/1356", "nt2": "///A/1374", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.762, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.800, "chi2": -172.177, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.432, "C1C1_dist": 10.772, "N1N9_dist": 8.939, "C6C8_dist": 9.834, "CNNC_torsion": 0.615, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.89],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 7.747, "planarity": 0.104, "simple_Shear": -0.156, "simple_Stretch": -0.176, "simple_Buckle": -6.674, "simple_Propeller": -3.934, "bp_simpleParams": [ -0.156, -0.176, -0.494, -6.674, -3.934, -0.758 ], "bp_params": [ -0.154, -0.177, -0.494, -6.636, -3.997, -0.757 ], "frame": { "rmsd": null, "origin": [ 155.782, 189.623, 236.484 ], "x_axis": [ 0.973, 0.069, -0.222 ], "y_axis": [ 0.231, -0.176, 0.957 ], "z_axis": [ 0.027, -0.982, -0.187 ], "quaternion": [ 0.634, 0.764, 0.098, -0.064 ] } }, { "index": 623, "nt1": "///A/1357", "nt2": "///A/1373", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 172.962, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.320, "chi2": -157.444, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.728, "C1C1_dist": 10.892, "N1N9_dist": 9.000, "C6C8_dist": 9.824, "CNNC_torsion": -5.115, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.88],N1-N3(imino)[2.90]", "interBase_angle": 5.174, "planarity": 0.061, "simple_Shear": 0.055, "simple_Stretch": -0.090, "simple_Buckle": -3.307, "simple_Propeller": -3.979, "bp_simpleParams": [ 0.055, -0.090, -0.092, -3.307, -3.979, -4.463 ], "bp_params": [ 0.054, -0.091, -0.092, -3.351, -3.942, -4.463 ], "frame": { "rmsd": null, "origin": [ 155.632, 186.775, 234.347 ], "x_axis": [ 0.957, 0.021, 0.289 ], "y_axis": [ -0.285, -0.112, 0.952 ], "z_axis": [ 0.052, -0.994, -0.101 ], "quaternion": [ 0.660, 0.737, -0.090, 0.116 ] } }, { "index": 624, "nt1": "///A/1358", "nt2": "///A/1372", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -138.167, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.767, "chi2": -178.211, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.419, "C1C1_dist": 10.661, "N1N9_dist": 8.891, "C6C8_dist": 9.814, "CNNC_torsion": 7.614, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.93],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 8.360, "planarity": 0.224, "simple_Shear": -0.133, "simple_Stretch": -0.221, "simple_Buckle": 5.464, "simple_Propeller": 6.327, "bp_simpleParams": [ -0.133, -0.221, -0.789, 5.464, 6.327, -1.151 ], "bp_params": [ -0.132, -0.223, -0.789, 5.410, 6.373, -1.152 ], "frame": { "rmsd": null, "origin": [ 157.351, 184.118, 232.640 ], "x_axis": [ 0.582, 0.025, 0.813 ], "y_axis": [ -0.790, -0.219, 0.572 ], "z_axis": [ 0.192, -0.976, -0.108 ], "quaternion": [ 0.560, 0.691, -0.277, 0.364 ] } }, { "index": 625, "nt1": "///A/1359", "nt2": "///A/1370", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -105.877, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 50.869, "chi2": -154.339, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 19.054, "C1C1_dist": 12.125, "N1N9_dist": 9.935, "C6C8_dist": 9.299, "CNNC_torsion": -165.308, "hbonds_num": 1, "hbonds_desc": "N2(amino)*N4(amino)[3.05]", "interBase_angle": 32.734, "planarity": 0.588, "simple_Shear": 6.034, "simple_Stretch": 4.159, "simple_Buckle": 30.925, "simple_Propeller": -10.732, "bp_simpleParams": [ 6.034, 4.159, -2.166, 30.925, -10.732, -72.953 ], "bp_params": [ 7.112, -1.770, -2.166, 12.629, -30.200, -74.557 ], "frame": { "rmsd": null, "origin": [ 159.066, 180.791, 231.221 ], "x_axis": [ -0.670, -0.189, 0.718 ], "y_axis": [ -0.656, -0.302, -0.691 ], "z_axis": [ 0.347, -0.935, 0.078 ], "quaternion": [ 0.163, 0.372, -0.568, 0.716 ] } }, { "index": 626, "nt1": "///A/1359", "nt2": "///A/1372", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -105.877, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 78.442, "chi2": -178.211, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 63.012, "C1C1_dist": 10.571, "N1N9_dist": 9.607, "C6C8_dist": 11.179, "CNNC_torsion": -1.057, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N3[3.28]", "interBase_angle": 28.700, "planarity": 0.358, "simple_Shear": 1.126, "simple_Stretch": 1.859, "simple_Buckle": 24.090, "simple_Propeller": 15.600, "bp_simpleParams": [ 1.126, 1.859, 1.838, 24.090, 15.600, 39.773 ], "bp_params": [ 1.382, 1.678, 1.838, 26.131, 11.868, 39.023 ], "frame": { "rmsd": null, "origin": [ 157.134, 182.554, 233.508 ], "x_axis": [ 0.256, 0.012, 0.967 ], "y_axis": [ -0.897, -0.371, 0.242 ], "z_axis": [ 0.361, -0.929, -0.084 ], "quaternion": [ 0.448, 0.654, -0.338, 0.508 ] } }, { "index": 627, "nt1": "///A/1361", "nt2": "///A/1372", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": 175.997, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 34.116, "chi2": -178.211, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 127.740, "C1C1_dist": 9.189, "N1N9_dist": 8.882, "C6C8_dist": 10.110, "CNNC_torsion": 8.025, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.30],N1-O2'(hydroxyl)[3.16]", "interBase_angle": 24.360, "planarity": 0.360, "simple_Shear": -5.818, "simple_Stretch": 3.799, "simple_Buckle": 23.740, "simple_Propeller": -5.462, "bp_simpleParams": [ -5.818, 3.799, 1.352, 23.740, -5.462, 60.788 ], "bp_params": [ -6.866, -1.069, 1.352, 21.261, 11.889, 60.199 ], "frame": { "rmsd": null, "origin": [ 157.824, 183.280, 229.230 ], "x_axis": [ 0.079, -0.013, 0.997 ], "y_axis": [ -0.947, -0.313, 0.071 ], "z_axis": [ 0.311, -0.950, -0.037 ], "quaternion": [ 0.427, 0.598, -0.402, 0.547 ] } }, { "index": 628, "nt1": "///A/1362", "nt2": "///A/1370", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.575, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.853, "chi2": -154.339, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 46.064, "C1C1_dist": 11.564, "N1N9_dist": 9.650, "C6C8_dist": 10.428, "CNNC_torsion": -12.047, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.34],N1(imino)*N4(amino)[3.32],N2(amino)-N3[3.35]", "interBase_angle": 14.994, "planarity": 0.169, "simple_Shear": 1.077, "simple_Stretch": 0.512, "simple_Buckle": -6.532, "simple_Propeller": -13.496, "bp_simpleParams": [ 1.077, 0.512, -0.192, -6.532, -13.496, -5.228 ], "bp_params": [ 1.129, 0.383, -0.192, -8.044, -12.654, -5.247 ], "frame": { "rmsd": null, "origin": [ 160.647, 180.159, 228.041 ], "x_axis": [ -0.970, -0.166, 0.176 ], "y_axis": [ -0.156, -0.129, -0.979 ], "z_axis": [ 0.185, -0.978, 0.099 ], "quaternion": [ -0.003, 0.122, -0.660, 0.741 ] } }, { "index": 629, "nt1": "///A/1363", "nt2": "///A/1369", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -147.466, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 52.968, "chi2": -152.766, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.755, "C1C1_dist": 10.556, "N1N9_dist": 8.824, "C6C8_dist": 9.770, "CNNC_torsion": 5.021, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 1.528, "planarity": 0.182, "simple_Shear": -0.169, "simple_Stretch": -0.268, "simple_Buckle": 0.017, "simple_Propeller": -1.528, "bp_simpleParams": [ -0.169, -0.268, -0.793, 0.017, -1.528, 0.750 ], "bp_params": [ -0.165, -0.270, -0.793, 0.036, -1.528, 0.749 ], "frame": { "rmsd": null, "origin": [ 160.298, 177.159, 230.050 ], "x_axis": [ -0.973, -0.094, -0.211 ], "y_axis": [ 0.220, -0.106, -0.970 ], "z_axis": [ 0.069, -0.990, 0.124 ], "quaternion": [ -0.106, -0.048, -0.660, 0.742 ] } }, { "index": 630, "nt1": "///A/1370", "nt2": "///A/1661", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "c.W", "DSSR": "c.-W", "intra_chain": true, "chi1": -154.339, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 100.042, "chi2": -142.553, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 26.903, "C1C1_dist": 11.419, "N1N9_dist": 10.404, "C6C8_dist": 11.212, "CNNC_torsion": 0.603, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.96]", "interBase_angle": 53.309, "planarity": 0.736, "simple_Shear": 5.368, "simple_Stretch": 3.893, "simple_Buckle": 22.522, "simple_Propeller": 48.317, "bp_simpleParams": [ 5.368, 3.893, 0.857, 22.522, 48.317, 17.503 ], "bp_params": [ 6.623, -0.328, 0.857, 47.362, 24.468, 16.485 ], "frame": { "rmsd": null, "origin": [ 164.476, 179.343, 228.268 ], "x_axis": [ -0.993, 0.117, -0.020 ], "y_axis": [ -0.047, -0.226, 0.973 ], "z_axis": [ 0.110, 0.967, 0.230 ], "quaternion": [ 0.052, 0.029, 0.620, 0.782 ] } }, { "index": 631, "nt1": "///A/1377", "nt2": "///A/1432", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -161.459, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 95.566, "chi2": -148.191, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 61.939, "C1C1_dist": 8.588, "N1N9_dist": 8.501, "C6C8_dist": 10.824, "CNNC_torsion": -177.689, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[2.91],N2(amino)-N3[3.78]", "interBase_angle": 7.054, "planarity": 0.149, "simple_Shear": 7.085, "simple_Stretch": 4.599, "simple_Buckle": 2.983, "simple_Propeller": 6.392, "bp_simpleParams": [ 7.085, 4.599, -0.626, 2.983, 6.392, -146.817 ], "bp_params": [ -2.311, -8.125, -0.626, 1.960, -6.776, -146.867 ], "frame": { "rmsd": null, "origin": [ 162.435, 198.017, 241.030 ], "x_axis": [ -0.902, 0.420, 0.099 ], "y_axis": [ 0.105, -0.009, 0.994 ], "z_axis": [ 0.418, 0.908, -0.036 ], "quaternion": [ 0.115, 0.189, 0.694, 0.685 ] } }, { "index": 632, "nt1": "///A/1381", "nt2": "///A/1647", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -98.984, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 17.488, "chi2": -122.612, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 39.281, "C1C1_dist": 9.649, "N1N9_dist": 7.233, "C6C8_dist": 6.473, "CNNC_torsion": -146.238, "hbonds_num": 2, "hbonds_desc": "N7-N3(imino)[3.01],N6(amino)-O2(carbonyl)[2.85]", "interBase_angle": 15.874, "planarity": 0.289, "simple_Shear": -4.835, "simple_Stretch": 0.981, "simple_Buckle": -5.805, "simple_Propeller": 14.775, "bp_simpleParams": [ -4.835, 0.981, 1.085, -5.805, 14.775, -85.141 ], "bp_params": [ -4.233, -2.534, 1.085, -14.236, 7.023, -84.806 ], "frame": { "rmsd": null, "origin": [ 178.529, 210.620, 241.283 ], "x_axis": [ -0.658, 0.190, -0.729 ], "y_axis": [ -0.145, 0.918, 0.370 ], "z_axis": [ 0.739, 0.349, -0.576 ], "quaternion": [ 0.413, 0.013, 0.888, 0.203 ] } }, { "index": 633, "nt1": "///A/1382", "nt2": "///A/1443", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 152.188, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 47.828, "chi2": -173.362, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.398, "C1C1_dist": 10.823, "N1N9_dist": 8.950, "C6C8_dist": 9.848, "CNNC_torsion": -2.475, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 7.385, "planarity": 0.154, "simple_Shear": -0.230, "simple_Stretch": -0.169, "simple_Buckle": -0.721, "simple_Propeller": 7.350, "bp_simpleParams": [ -0.230, -0.169, 0.463, -0.721, 7.350, 0.727 ], "bp_params": [ -0.227, -0.173, 0.463, -0.848, 7.336, 0.729 ], "frame": { "rmsd": null, "origin": [ 184.065, 221.711, 250.322 ], "x_axis": [ -0.612, 0.131, 0.780 ], "y_axis": [ -0.756, 0.193, -0.626 ], "z_axis": [ -0.232, -0.972, -0.019 ], "quaternion": [ -0.375, -0.231, 0.675, -0.592 ] } }, { "index": 634, "nt1": "///A/1383", "nt2": "///A/1442", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -136.522, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 52.915, "chi2": 170.819, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.170, "C1C1_dist": 11.541, "N1N9_dist": 9.754, "C6C8_dist": 10.647, "CNNC_torsion": 6.169, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[3.71],O4(carbonyl)-N6(amino)[3.71]", "interBase_angle": 13.175, "planarity": 0.178, "simple_Shear": -0.171, "simple_Stretch": 0.728, "simple_Buckle": 6.071, "simple_Propeller": 11.693, "bp_simpleParams": [ -0.171, 0.728, 0.299, 6.071, 11.693, -1.363 ], "bp_params": [ -0.185, 0.724, 0.299, 5.828, 11.816, -1.368 ], "frame": { "rmsd": null, "origin": [ 184.702, 218.324, 251.150 ], "x_axis": [ -0.935, 0.294, 0.198 ], "y_axis": [ -0.204, 0.009, -0.979 ], "z_axis": [ -0.289, -0.956, 0.052 ], "quaternion": [ 0.177, -0.033, -0.688, 0.703 ] } }, { "index": 635, "nt1": "///A/1384", "nt2": "///A/1646", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.955, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.783, "chi2": -153.491, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.921, "C1C1_dist": 10.805, "N1N9_dist": 8.983, "C6C8_dist": 9.880, "CNNC_torsion": -4.881, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.83],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 5.082, "planarity": 0.074, "simple_Shear": 0.115, "simple_Stretch": -0.133, "simple_Buckle": 0.000, "simple_Propeller": -5.082, "bp_simpleParams": [ 0.115, -0.133, -0.104, 0.000, -5.082, -1.130 ], "bp_params": [ 0.114, -0.133, -0.104, -0.036, -5.081, -1.130 ], "frame": { "rmsd": null, "origin": [ 179.594, 212.194, 237.913 ], "x_axis": [ -0.494, 0.694, 0.524 ], "y_axis": [ 0.740, 0.020, 0.672 ], "z_axis": [ 0.456, 0.720, -0.524 ], "quaternion": [ -0.024, 0.503, 0.714, 0.487 ] } }, { "index": 636, "nt1": "///A/1385", "nt2": "///A/1645", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.408, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.410, "chi2": -170.930, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.472, "C1C1_dist": 10.406, "N1N9_dist": 8.778, "C6C8_dist": 9.792, "CNNC_torsion": 3.880, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.85],N2(amino)-O2(carbonyl)[2.67]", "interBase_angle": 12.718, "planarity": 0.167, "simple_Shear": -0.290, "simple_Stretch": -0.212, "simple_Buckle": 6.873, "simple_Propeller": 10.702, "bp_simpleParams": [ -0.290, -0.212, 0.548, 6.873, 10.702, 4.161 ], "bp_params": [ -0.285, -0.219, 0.548, 6.630, 10.854, 4.172 ], "frame": { "rmsd": null, "origin": [ 179.826, 214.280, 235.200 ], "x_axis": [ -0.120, 0.456, 0.882 ], "y_axis": [ 0.796, -0.486, 0.360 ], "z_axis": [ 0.593, 0.746, -0.305 ], "quaternion": [ -0.149, 0.646, 0.485, 0.570 ] } }, { "index": 637, "nt1": "///A/1386", "nt2": "///A/1644", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.950, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.831, "chi2": -164.438, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.912, "C1C1_dist": 10.547, "N1N9_dist": 8.853, "C6C8_dist": 9.802, "CNNC_torsion": 8.301, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 4.890, "planarity": 0.195, "simple_Shear": -0.161, "simple_Stretch": -0.255, "simple_Buckle": -4.790, "simple_Propeller": -0.985, "bp_simpleParams": [ -0.161, -0.255, -0.998, -4.790, -0.985, 0.772 ], "bp_params": [ -0.158, -0.256, -0.998, -4.779, -1.040, 0.772 ], "frame": { "rmsd": null, "origin": [ 179.870, 218.251, 234.334 ], "x_axis": [ 0.266, -0.019, 0.964 ], "y_axis": [ 0.852, -0.462, -0.245 ], "z_axis": [ 0.450, 0.887, -0.107 ], "quaternion": [ -0.417, 0.677, 0.308, 0.522 ] } }, { "index": 638, "nt1": "///A/1387", "nt2": "///A/1643", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.383, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.324, "chi2": -174.521, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.603, "C1C1_dist": 10.766, "N1N9_dist": 8.934, "C6C8_dist": 9.837, "CNNC_torsion": 17.354, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.82]", "interBase_angle": 21.916, "planarity": 0.288, "simple_Shear": -0.130, "simple_Stretch": -0.152, "simple_Buckle": -8.789, "simple_Propeller": 20.076, "bp_simpleParams": [ -0.130, -0.152, -0.340, -8.789, 20.076, -1.033 ], "bp_params": [ -0.127, -0.154, -0.340, -9.033, 19.968, -1.046 ], "frame": { "rmsd": null, "origin": [ 180.175, 221.983, 235.296 ], "x_axis": [ 0.549, -0.440, 0.711 ], "y_axis": [ 0.560, -0.437, -0.704 ], "z_axis": [ 0.620, 0.784, 0.007 ], "quaternion": [ 0.529, -0.703, -0.043, -0.473 ] } }, { "index": 639, "nt1": "///A/1389", "nt2": "///A/1420", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.447, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.448, "chi2": 176.962, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.763, "C1C1_dist": 10.589, "N1N9_dist": 8.884, "C6C8_dist": 9.879, "CNNC_torsion": 12.727, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.99]", "interBase_angle": 17.518, "planarity": 0.225, "simple_Shear": 0.238, "simple_Stretch": -0.129, "simple_Buckle": 0.234, "simple_Propeller": 17.516, "bp_simpleParams": [ 0.238, -0.129, 0.024, 0.234, 17.516, 3.353 ], "bp_params": [ 0.235, -0.134, 0.024, 0.576, 17.508, 3.392 ], "frame": { "rmsd": null, "origin": [ 193.172, 219.963, 230.343 ], "x_axis": [ -0.659, -0.716, -0.231 ], "y_axis": [ -0.752, 0.632, 0.187 ], "z_axis": [ 0.012, 0.297, -0.955 ], "quaternion": [ 0.068, -0.407, 0.901, 0.134 ] } }, { "index": 640, "nt1": "///A/1390", "nt2": "///A/1419", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.571, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.113, "chi2": 168.658, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 45.365, "C1C1_dist": 11.068, "N1N9_dist": 9.070, "C6C8_dist": 9.738, "CNNC_torsion": 8.126, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.32],N3-N1(imino)[2.97],N4(amino)-O6(carbonyl)[2.56]", "interBase_angle": 14.360, "planarity": 0.158, "simple_Shear": 0.274, "simple_Stretch": -0.203, "simple_Buckle": -7.563, "simple_Propeller": 12.207, "bp_simpleParams": [ 0.274, -0.203, 0.124, -7.563, 12.207, -11.062 ], "bp_params": [ 0.270, -0.209, 0.124, -7.299, 12.367, -11.104 ], "frame": { "rmsd": null, "origin": [ 194.690, 218.524, 226.571 ], "x_axis": [ -0.961, -0.259, 0.102 ], "y_axis": [ -0.244, 0.960, 0.137 ], "z_axis": [ -0.133, 0.107, -0.985 ], "quaternion": [ -0.059, -0.127, 0.988, 0.062 ] } }, { "index": 641, "nt1": "///A/1391", "nt2": "///A/1417", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -178.669, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 32.396, "chi2": -114.872, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 18.352, "C1C1_dist": 9.799, "N1N9_dist": 7.271, "C6C8_dist": 6.373, "CNNC_torsion": -174.690, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.91],N3(imino)-N7[2.99]", "interBase_angle": 4.859, "planarity": 0.111, "simple_Shear": 4.593, "simple_Stretch": 1.408, "simple_Buckle": 4.329, "simple_Propeller": -2.206, "bp_simpleParams": [ 4.593, 1.408, 0.317, 4.329, -2.206, -94.529 ], "bp_params": [ 4.295, -2.152, 0.317, 1.610, -4.585, -94.569 ], "frame": { "rmsd": null, "origin": [ 195.801, 216.191, 222.777 ], "x_axis": [ -0.506, 0.818, 0.273 ], "y_axis": [ 0.812, 0.558, -0.168 ], "z_axis": [ -0.290, 0.137, -0.947 ], "quaternion": [ -0.162, 0.470, 0.868, -0.009 ] } }, { "index": 642, "nt1": "///A/1392", "nt2": "///A/1418", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 169.333, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 46.816, "chi2": -174.505, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 44.474, "C1C1_dist": 11.394, "N1N9_dist": 9.347, "C6C8_dist": 9.526, "CNNC_torsion": 34.049, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.17]", "interBase_angle": 74.396, "planarity": 0.898, "simple_Shear": 1.650, "simple_Stretch": 1.341, "simple_Buckle": -62.613, "simple_Propeller": 40.180, "bp_simpleParams": [ 1.650, 1.341, 0.437, -62.613, 40.180, -32.478 ], "bp_params": [ 1.762, 1.190, 0.437, -60.281, 43.601, -30.953 ], "frame": { "rmsd": null, "origin": [ 195.320, 213.219, 218.806 ], "x_axis": [ -0.810, 0.564, 0.163 ], "y_axis": [ 0.501, 0.809, -0.307 ], "z_axis": [ -0.305, -0.167, -0.937 ], "quaternion": [ -0.124, 0.282, 0.943, -0.126 ] } }, { "index": 643, "nt1": "///A/1393", "nt2": "///A/1416", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -175.215, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 9.398, "chi2": -151.112, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 90.588, "C1C1_dist": 9.978, "N1N9_dist": 8.635, "C6C8_dist": 9.033, "CNNC_torsion": 92.434, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[2.87],N6(amino)-N3[2.97]", "interBase_angle": 4.421, "planarity": 0.251, "simple_Shear": -7.154, "simple_Stretch": 2.252, "simple_Buckle": -3.856, "simple_Propeller": -2.162, "bp_simpleParams": [ -7.154, 2.252, -1.202, -3.856, -2.162, -7.335 ], "bp_params": [ -6.533, -3.684, -1.202, -1.057, -4.293, -7.340 ], "frame": { "rmsd": null, "origin": [ 193.677, 218.689, 217.228 ], "x_axis": [ -0.173, 0.775, 0.607 ], "y_axis": [ 0.949, 0.296, -0.106 ], "z_axis": [ -0.262, 0.558, -0.787 ], "quaternion": [ -0.289, 0.574, 0.751, 0.150 ] } }, { "index": 644, "nt1": "///A/1394", "nt2": "///A/1415", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.657, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.275, "chi2": -160.299, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.200, "C1C1_dist": 10.657, "N1N9_dist": 8.892, "C6C8_dist": 9.821, "CNNC_torsion": -0.985, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 4.302, "planarity": 0.107, "simple_Shear": -0.208, "simple_Stretch": -0.198, "simple_Buckle": -2.374, "simple_Propeller": -3.587, "bp_simpleParams": [ -0.208, -0.198, -0.488, -2.374, -3.587, 0.421 ], "bp_params": [ -0.205, -0.201, -0.488, -2.318, -3.624, 0.421 ], "frame": { "rmsd": null, "origin": [ 192.687, 221.481, 214.329 ], "x_axis": [ 0.749, 0.605, 0.270 ], "y_axis": [ 0.640, -0.554, -0.533 ], "z_axis": [ -0.173, 0.572, -0.802 ], "quaternion": [ -0.313, 0.881, 0.353, 0.027 ] } }, { "index": 645, "nt1": "///A/1395", "nt2": "///A/1414", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.420, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.398, "chi2": -172.638, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.467, "C1C1_dist": 10.707, "N1N9_dist": 8.929, "C6C8_dist": 9.858, "CNNC_torsion": -6.036, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 5.248, "planarity": 0.074, "simple_Shear": 0.147, "simple_Stretch": -0.152, "simple_Buckle": -3.082, "simple_Propeller": -4.248, "bp_simpleParams": [ 0.147, -0.152, 0.091, -3.082, -4.248, -0.119 ], "bp_params": [ 0.146, -0.154, 0.091, -3.128, -4.214, -0.119 ], "frame": { "rmsd": null, "origin": [ 191.657, 224.511, 212.461 ], "x_axis": [ 0.982, 0.164, -0.089 ], "y_axis": [ 0.087, -0.822, -0.563 ], "z_axis": [ -0.166, 0.546, -0.821 ], "quaternion": [ -0.291, 0.952, 0.066, -0.067 ] } }, { "index": 646, "nt1": "///A/1396", "nt2": "///A/1413", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.743, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.856, "chi2": -165.823, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.325, "C1C1_dist": 10.750, "N1N9_dist": 8.980, "C6C8_dist": 9.901, "CNNC_torsion": -2.803, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.82],N3-N1(imino)[2.94],N4(amino)-O6(carbonyl)[2.97]", "interBase_angle": 4.426, "planarity": 0.116, "simple_Shear": 0.260, "simple_Stretch": -0.116, "simple_Buckle": 3.344, "simple_Propeller": 2.900, "bp_simpleParams": [ 0.260, -0.116, 0.302, 3.344, 2.900, 0.272 ], "bp_params": [ 0.258, -0.121, 0.302, 3.404, 2.829, 0.272 ], "frame": { "rmsd": null, "origin": [ 191.416, 227.769, 210.893 ], "x_axis": [ 0.915, -0.327, -0.236 ], "y_axis": [ -0.399, -0.817, -0.417 ], "z_axis": [ -0.056, 0.476, -0.878 ], "quaternion": [ -0.235, 0.950, -0.191, -0.077 ] } }, { "index": 647, "nt1": "///A/1397", "nt2": "///A/1412", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -164.446, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 92.799, "chi2": -170.975, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 6.776, "C1C1_dist": 10.024, "N1N9_dist": 8.738, "C6C8_dist": 9.129, "CNNC_torsion": -124.804, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.88],N3-N6(amino)[3.11]", "interBase_angle": 4.940, "planarity": 0.088, "simple_Shear": 7.411, "simple_Stretch": 2.726, "simple_Buckle": 4.902, "simple_Propeller": 0.607, "bp_simpleParams": [ 7.411, 2.726, 0.319, 4.902, 0.607, -8.070 ], "bp_params": [ 6.907, -3.828, 0.319, 3.663, -3.314, -8.069 ], "frame": { "rmsd": null, "origin": [ 191.465, 230.511, 208.107 ], "x_axis": [ 0.122, -0.875, -0.468 ], "y_axis": [ -0.992, -0.124, -0.027 ], "z_axis": [ -0.034, 0.468, -0.883 ], "quaternion": [ -0.170, 0.730, -0.640, -0.172 ] } }, { "index": 648, "nt1": "///A/1398", "nt2": "///A/1411", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -152.986, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 14.945, "chi2": -171.496, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 26.671, "C1C1_dist": 10.046, "N1N9_dist": 7.376, "C6C8_dist": 6.293, "CNNC_torsion": -168.532, "hbonds_num": 2, "hbonds_desc": "N7-N3(imino)[2.90],N6(amino)-O2(carbonyl)[2.79]", "interBase_angle": 4.295, "planarity": 0.165, "simple_Shear": -3.629, "simple_Stretch": 0.861, "simple_Buckle": -0.593, "simple_Propeller": 4.254, "bp_simpleParams": [ -3.629, 0.861, 0.914, -0.593, 4.254, -98.433 ], "bp_params": [ -3.471, -1.364, 0.914, -2.914, 3.155, -98.436 ], "frame": { "rmsd": null, "origin": [ 191.134, 237.455, 207.470 ], "x_axis": [ 0.108, -0.898, -0.426 ], "y_axis": [ -0.993, -0.114, -0.010 ], "z_axis": [ -0.040, 0.424, -0.905 ], "quaternion": [ -0.149, 0.729, -0.649, -0.160 ] } }, { "index": 649, "nt1": "///A/1398", "nt2": "///A/2241", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -152.986, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 19.444, "chi2": -135.335, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 50.424, "C1C1_dist": 13.799, "N1N9_dist": 11.565, "C6C8_dist": 11.817, "CNNC_torsion": 121.896, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N1[3.43]", "interBase_angle": 33.290, "planarity": 0.466, "simple_Shear": -1.178, "simple_Stretch": 2.881, "simple_Buckle": -28.713, "simple_Propeller": -16.846, "bp_simpleParams": [ -1.178, 2.881, -0.488, -28.713, -16.846, 142.265 ], "bp_params": [ -2.739, -1.478, -0.488, 19.640, -26.879, 142.696 ], "frame": { "rmsd": null, "origin": [ 193.161, 239.452, 207.995 ], "x_axis": [ 0.779, 0.477, 0.406 ], "y_axis": [ 0.584, -0.788, -0.196 ], "z_axis": [ 0.226, 0.390, -0.893 ], "quaternion": [ -0.157, 0.930, 0.285, 0.170 ] } }, { "index": 650, "nt1": "///A/1399", "nt2": "///A/2243", "bp": "G+C", "name": "rWC", "Saenger": "22-XXII", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -154.312, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 27.608, "chi2": -174.048, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 66.472, "C1C1_dist": 10.066, "N1N9_dist": 8.415, "C6C8_dist": 9.753, "CNNC_torsion": -163.675, "hbonds_num": 2, "hbonds_desc": "N1(imino)-O2(carbonyl)[2.90],N2(amino)-N3[3.23]", "interBase_angle": 14.562, "planarity": 0.400, "simple_Shear": 3.460, "simple_Stretch": 0.870, "simple_Buckle": -13.663, "simple_Propeller": 5.037, "bp_simpleParams": [ 3.460, 0.870, -1.888, -13.663, 5.037, 138.611 ], "bp_params": [ 0.449, 3.539, -1.888, -9.652, -10.904, 138.647 ], "frame": { "rmsd": null, "origin": [ 195.610, 238.046, 204.242 ], "x_axis": [ 0.855, -0.457, 0.245 ], "y_axis": [ -0.276, -0.801, -0.531 ], "z_axis": [ 0.439, 0.386, -0.811 ], "quaternion": [ -0.246, 0.931, -0.197, 0.184 ] } }, { "index": 651, "nt1": "///A/1400", "nt2": "///A/1409", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.004, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.957, "chi2": -167.719, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.451, "C1C1_dist": 10.774, "N1N9_dist": 8.927, "C6C8_dist": 9.774, "CNNC_torsion": 7.068, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.86],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.84]", "interBase_angle": 10.678, "planarity": 0.179, "simple_Shear": -0.127, "simple_Stretch": -0.240, "simple_Buckle": -10.646, "simple_Propeller": -0.825, "bp_simpleParams": [ -0.127, -0.240, -0.964, -10.646, -0.825, -2.578 ], "bp_params": [ -0.126, -0.241, -0.964, -10.640, -0.903, -2.567 ], "frame": { "rmsd": null, "origin": [ 191.119, 230.714, 198.551 ], "x_axis": [ -0.974, -0.139, 0.178 ], "y_axis": [ -0.133, 0.990, 0.045 ], "z_axis": [ -0.183, 0.021, -0.983 ], "quaternion": [ -0.091, -0.069, 0.993, 0.017 ] } }, { "index": 652, "nt1": "///A/1401", "nt2": "///A/1408", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.822, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.072, "chi2": -156.995, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.766, "C1C1_dist": 10.702, "N1N9_dist": 8.924, "C6C8_dist": 9.847, "CNNC_torsion": 4.507, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 6.919, "planarity": 0.110, "simple_Shear": 0.168, "simple_Stretch": -0.167, "simple_Buckle": -2.975, "simple_Propeller": 6.246, "bp_simpleParams": [ 0.168, -0.167, -0.304, -2.975, 6.246, -0.347 ], "bp_params": [ 0.166, -0.169, -0.304, -2.900, 6.282, -0.347 ], "frame": { "rmsd": null, "origin": [ 190.631, 229.302, 195.383 ], "x_axis": [ -0.881, 0.403, 0.249 ], "y_axis": [ 0.425, 0.904, 0.041 ], "z_axis": [ -0.209, 0.142, -0.968 ], "quaternion": [ -0.118, 0.214, 0.969, 0.047 ] } }, { "index": 653, "nt1": "///A/1402", "nt2": "///A/1407", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.371, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.229, "chi2": 179.207, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.310, "C1C1_dist": 10.739, "N1N9_dist": 8.953, "C6C8_dist": 9.882, "CNNC_torsion": -10.787, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 7.160, "planarity": 0.109, "simple_Shear": 0.144, "simple_Stretch": -0.134, "simple_Buckle": -2.402, "simple_Propeller": -6.745, "bp_simpleParams": [ 0.144, -0.134, 0.332, -2.402, -6.745, 0.163 ], "bp_params": [ 0.143, -0.135, 0.332, -2.471, -6.720, 0.163 ], "frame": { "rmsd": null, "origin": [ 187.845, 229.127, 192.732 ], "x_axis": [ -0.410, 0.800, 0.437 ], "y_axis": [ 0.835, 0.522, -0.173 ], "z_axis": [ -0.367, 0.294, -0.883 ], "quaternion": [ -0.239, 0.487, 0.839, 0.036 ] } }, { "index": 654, "nt1": "///A/1403", "nt2": "///A/1406", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -159.244, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 88.402, "chi2": -160.367, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 15.682, "C1C1_dist": 10.502, "N1N9_dist": 9.234, "C6C8_dist": 9.203, "CNNC_torsion": -164.689, "hbonds_num": 2, "hbonds_desc": "N2(amino)-OP2[2.84],N2(amino)-N7[3.56]", "interBase_angle": 17.993, "planarity": 0.291, "simple_Shear": 8.200, "simple_Stretch": 5.024, "simple_Buckle": 8.025, "simple_Propeller": 16.104, "bp_simpleParams": [ 8.200, 5.024, -0.602, 8.025, 16.104, -38.003 ], "bp_params": [ 8.180, -5.056, -0.602, 17.993, 0.129, -37.568 ], "frame": { "rmsd": null, "origin": [ 185.646, 225.899, 189.569 ], "x_axis": [ 0.434, 0.901, -0.024 ], "y_axis": [ 0.827, -0.409, -0.386 ], "z_axis": [ -0.358, 0.147, -0.922 ], "quaternion": [ -0.160, 0.831, 0.520, -0.115 ] } }, { "index": 655, "nt1": "///A/1419", "nt2": "///A/1618", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": 168.658, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 92.387, "chi2": -165.648, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 41.836, "C1C1_dist": 10.679, "N1N9_dist": 9.864, "C6C8_dist": 11.326, "CNNC_torsion": 119.814, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N1[3.02]", "interBase_angle": 62.238, "planarity": 0.869, "simple_Shear": 2.810, "simple_Stretch": 4.740, "simple_Buckle": -48.223, "simple_Propeller": -39.346, "bp_simpleParams": [ 2.810, 4.740, -1.288, -48.223, -39.346, -103.591 ], "bp_params": [ 3.052, -4.588, -1.288, -13.839, 60.680, -111.198 ], "frame": { "rmsd": null, "origin": [ 197.572, 219.226, 226.684 ], "x_axis": [ -0.394, -0.800, 0.452 ], "y_axis": [ 0.911, -0.406, 0.074 ], "z_axis": [ 0.125, 0.441, 0.889 ], "quaternion": [ 0.522, -0.176, -0.157, -0.820 ] } }, { "index": 656, "nt1": "///A/1424", "nt2": "///A/1441", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -74.894, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 56.258, "chi2": -161.279, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.131, "C1C1_dist": 10.345, "N1N9_dist": 8.650, "C6C8_dist": 9.486, "CNNC_torsion": 15.348, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.90],N1-N3(imino)[2.91]", "interBase_angle": 19.392, "planarity": 0.367, "simple_Shear": 0.364, "simple_Stretch": -0.507, "simple_Buckle": -18.204, "simple_Propeller": -6.684, "bp_simpleParams": [ 0.364, -0.507, -1.944, -18.204, -6.684, -2.073 ], "bp_params": [ 0.341, -0.523, -1.944, -18.502, -5.808, -2.049 ], "frame": { "rmsd": null, "origin": [ 184.128, 214.465, 255.473 ], "x_axis": [ -0.883, 0.434, -0.179 ], "y_axis": [ 0.064, -0.267, -0.962 ], "z_axis": [ -0.465, -0.861, 0.208 ], "quaternion": [ 0.120, -0.210, -0.594, 0.768 ] } }, { "index": 657, "nt1": "///A/1425", "nt2": "///A/1440", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -155.690, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.372, "chi2": -170.155, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.039, "C1C1_dist": 10.634, "N1N9_dist": 8.866, "C6C8_dist": 9.788, "CNNC_torsion": 3.976, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.85],N3-N1(imino)[2.97],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 7.314, "planarity": 0.295, "simple_Shear": 0.185, "simple_Stretch": -0.263, "simple_Buckle": -6.870, "simple_Propeller": -2.508, "bp_simpleParams": [ 0.185, -0.263, -0.990, -6.870, -2.508, 0.579 ], "bp_params": [ 0.181, -0.266, -0.990, -6.905, -2.411, 0.578 ], "frame": { "rmsd": null, "origin": [ 183.398, 211.314, 255.909 ], "x_axis": [ -0.712, 0.310, -0.630 ], "y_axis": [ 0.579, -0.247, -0.777 ], "z_axis": [ -0.397, -0.918, -0.003 ], "quaternion": [ -0.096, -0.367, -0.606, 0.699 ] } }, { "index": 658, "nt1": "///A/1426", "nt2": "///A/1439", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.984, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.345, "chi2": -147.418, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.999, "C1C1_dist": 10.622, "N1N9_dist": 8.899, "C6C8_dist": 9.837, "CNNC_torsion": 9.836, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.98],N1-N3(imino)[2.87]", "interBase_angle": 14.444, "planarity": 0.174, "simple_Shear": 0.071, "simple_Stretch": -0.084, "simple_Buckle": -6.723, "simple_Propeller": 12.784, "bp_simpleParams": [ 0.071, -0.084, -0.094, -6.723, 12.784, -0.416 ], "bp_params": [ 0.071, -0.085, -0.094, -6.595, 12.850, -0.418 ], "frame": { "rmsd": null, "origin": [ 181.262, 208.375, 256.752 ], "x_axis": [ -0.298, 0.303, -0.905 ], "y_axis": [ 0.871, -0.302, -0.388 ], "z_axis": [ -0.391, -0.904, -0.174 ], "quaternion": [ -0.238, -0.543, -0.541, 0.597 ] } }, { "index": 659, "nt1": "///A/1427", "nt2": "///A/1438", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 175.912, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.480, "chi2": -155.813, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.698, "C1C1_dist": 10.693, "N1N9_dist": 8.922, "C6C8_dist": 9.824, "CNNC_torsion": 3.577, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 10.225, "planarity": 0.124, "simple_Shear": -0.160, "simple_Stretch": -0.165, "simple_Buckle": -10.159, "simple_Propeller": -1.155, "bp_simpleParams": [ -0.160, -0.165, -0.565, -10.159, -1.155, -0.607 ], "bp_params": [ -0.159, -0.166, -0.565, -10.146, -1.261, -0.605 ], "frame": { "rmsd": null, "origin": [ 178.619, 206.394, 255.238 ], "x_axis": [ 0.349, 0.337, -0.874 ], "y_axis": [ 0.832, -0.540, 0.124 ], "z_axis": [ -0.431, -0.771, -0.469 ], "quaternion": [ 0.291, 0.768, 0.381, -0.425 ] } }, { "index": 660, "nt1": "///A/1428", "nt2": "///A/1437", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.197, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.110, "chi2": -168.142, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.403, "C1C1_dist": 10.818, "N1N9_dist": 8.932, "C6C8_dist": 9.797, "CNNC_torsion": -6.324, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.89],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.81]", "interBase_angle": 16.212, "planarity": 0.174, "simple_Shear": -0.202, "simple_Stretch": -0.149, "simple_Buckle": -13.102, "simple_Propeller": -9.548, "bp_simpleParams": [ -0.202, -0.149, -0.381, -13.102, -9.548, -1.238 ], "bp_params": [ -0.200, -0.151, -0.381, -13.013, -9.670, -1.234 ], "frame": { "rmsd": null, "origin": [ 176.561, 204.826, 252.890 ], "x_axis": [ 0.860, 0.073, -0.506 ], "y_axis": [ 0.423, -0.658, 0.623 ], "z_axis": [ -0.287, -0.750, -0.597 ], "quaternion": [ 0.389, 0.882, 0.141, -0.225 ] } }, { "index": 661, "nt1": "///A/1429", "nt2": "///A/1434", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -169.110, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 31.541, "chi2": -72.527, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 15.651, "C1C1_dist": 9.904, "N1N9_dist": 7.328, "C6C8_dist": 6.387, "CNNC_torsion": -170.438, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.70],N3(imino)-N7[2.92]", "interBase_angle": 4.846, "planarity": 0.113, "simple_Shear": 4.246, "simple_Stretch": 1.043, "simple_Buckle": 4.846, "simple_Propeller": 0.059, "bp_simpleParams": [ 4.246, 1.043, 0.366, 4.846, 0.059, -93.492 ], "bp_params": [ 3.947, -1.880, 0.366, 3.789, -3.022, -93.480 ], "frame": { "rmsd": null, "origin": [ 173.232, 203.941, 249.872 ], "x_axis": [ 0.634, -0.509, 0.582 ], "y_axis": [ -0.702, -0.063, 0.709 ], "z_axis": [ -0.324, -0.859, -0.397 ], "quaternion": [ 0.542, 0.724, -0.418, 0.089 ] } }, { "index": 662, "nt1": "///A/1444", "nt2": "///A/1642", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.480, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.895, "chi2": -150.004, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.754, "C1C1_dist": 10.659, "N1N9_dist": 8.959, "C6C8_dist": 9.913, "CNNC_torsion": -8.991, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.97]", "interBase_angle": 7.354, "planarity": 0.099, "simple_Shear": 0.182, "simple_Stretch": -0.108, "simple_Buckle": -0.786, "simple_Propeller": -7.312, "bp_simpleParams": [ 0.182, -0.108, 0.120, -0.786, -7.312, 0.965 ], "bp_params": [ 0.180, -0.111, 0.120, -0.887, -7.300, 0.967 ], "frame": { "rmsd": null, "origin": [ 183.014, 225.204, 248.343 ], "x_axis": [ -0.291, -0.170, 0.942 ], "y_axis": [ 0.950, -0.168, 0.263 ], "z_axis": [ 0.114, 0.971, 0.210 ], "quaternion": [ -0.433, 0.408, 0.478, 0.646 ] } }, { "index": 663, "nt1": "///A/1445", "nt2": "///A/1641", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.788, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.911, "chi2": -164.555, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.581, "C1C1_dist": 10.557, "N1N9_dist": 8.833, "C6C8_dist": 9.774, "CNNC_torsion": -4.667, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.93],N1-N3(imino)[2.82]", "interBase_angle": 0.380, "planarity": 0.081, "simple_Shear": 0.039, "simple_Stretch": -0.162, "simple_Buckle": 0.356, "simple_Propeller": 0.135, "bp_simpleParams": [ 0.039, -0.162, 0.384, 0.356, 0.135, 0.200 ], "bp_params": [ 0.038, -0.163, 0.384, 0.355, 0.136, 0.200 ], "frame": { "rmsd": null, "origin": [ 182.241, 228.863, 248.430 ], "x_axis": [ 0.198, -0.318, 0.927 ], "y_axis": [ 0.937, -0.215, -0.274 ], "z_axis": [ 0.287, 0.923, 0.255 ], "quaternion": [ 0.556, -0.538, -0.288, -0.564 ] } }, { "index": 664, "nt1": "///A/1446", "nt2": "///A/1640", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.936, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.087, "chi2": 171.737, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.020, "C1C1_dist": 10.606, "N1N9_dist": 8.853, "C6C8_dist": 9.797, "CNNC_torsion": -9.186, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.71],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 2.802, "planarity": 0.173, "simple_Shear": 0.194, "simple_Stretch": -0.240, "simple_Buckle": 2.441, "simple_Propeller": -1.376, "bp_simpleParams": [ 0.194, -0.240, 0.668, 2.441, -1.376, 0.948 ], "bp_params": [ 0.190, -0.242, 0.668, 2.421, -1.410, 0.948 ], "frame": { "rmsd": null, "origin": [ 182.012, 231.705, 250.670 ], "x_axis": [ 0.699, -0.414, 0.583 ], "y_axis": [ 0.635, -0.015, -0.772 ], "z_axis": [ 0.329, 0.910, 0.253 ], "quaternion": [ 0.696, -0.604, -0.091, -0.377 ] } }, { "index": 665, "nt1": "///A/1447", "nt2": "///A/1639", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.329, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.056, "chi2": -166.787, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.290, "C1C1_dist": 10.554, "N1N9_dist": 8.869, "C6C8_dist": 9.846, "CNNC_torsion": -1.490, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 6.562, "planarity": 0.183, "simple_Shear": 0.192, "simple_Stretch": -0.193, "simple_Buckle": 1.649, "simple_Propeller": 6.351, "bp_simpleParams": [ 0.192, -0.193, 0.615, 1.649, 6.351, 2.262 ], "bp_params": [ 0.189, -0.196, 0.615, 1.742, 6.326, 2.265 ], "frame": { "rmsd": null, "origin": [ 181.748, 234.511, 253.246 ], "x_axis": [ 0.905, -0.417, 0.088 ], "y_axis": [ 0.188, 0.205, -0.961 ], "z_axis": [ 0.382, 0.886, 0.264 ], "quaternion": [ 0.770, -0.599, 0.095, -0.196 ] } }, { "index": 666, "nt1": "///A/1448", "nt2": "///A/1638", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.070, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 51.963, "chi2": -172.427, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.699, "C1C1_dist": 10.647, "N1N9_dist": 8.815, "C6C8_dist": 9.668, "CNNC_torsion": -2.443, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.88],O4(carbonyl)-N6(amino)[2.81]", "interBase_angle": 11.740, "planarity": 0.266, "simple_Shear": -0.008, "simple_Stretch": -0.276, "simple_Buckle": 8.560, "simple_Propeller": 8.035, "bp_simpleParams": [ -0.008, -0.276, 0.820, 8.560, 8.035, -3.039 ], "bp_params": [ -0.007, -0.276, 0.820, 8.535, 8.061, -3.038 ], "frame": { "rmsd": null, "origin": [ 182.865, 236.778, 255.930 ], "x_axis": [ 0.843, -0.343, -0.413 ], "y_axis": [ -0.257, 0.418, -0.871 ], "z_axis": [ 0.472, 0.841, 0.264 ], "quaternion": [ 0.795, -0.539, 0.278, -0.027 ] } }, { "index": 667, "nt1": "///A/1449", "nt2": "///A/1639", "bp": "C-G", "name": "--", "Saenger": "--", "LW": ".WS", "DSSR": ".W-m", "intra_chain": true, "chi1": -143.062, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 21.405, "chi2": -166.787, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 118.437, "C1C1_dist": 9.286, "N1N9_dist": 8.655, "C6C8_dist": 9.518, "CNNC_torsion": 43.962, "hbonds_num": 1, "hbonds_desc": "N4(amino)-N3[3.60]", "interBase_angle": 49.388, "planarity": 0.628, "simple_Shear": -6.929, "simple_Stretch": 3.691, "simple_Buckle": 47.330, "simple_Propeller": -14.110, "bp_simpleParams": [ -6.929, 3.691, 0.416, 47.330, -14.110, 33.083 ], "bp_params": [ -7.372, -2.698, 0.416, 41.704, 26.457, 31.925 ], "frame": { "rmsd": null, "origin": [ 178.448, 235.475, 255.151 ], "x_axis": [ 0.839, -0.490, -0.238 ], "y_axis": [ 0.101, 0.569, -0.816 ], "z_axis": [ 0.535, 0.660, 0.527 ], "quaternion": [ 0.856, -0.431, 0.226, -0.172 ] } }, { "index": 668, "nt1": "///A/1450", "nt2": "///A/1637", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 175.011, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.377, "chi2": 176.394, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.540, "C1C1_dist": 10.625, "N1N9_dist": 8.888, "C6C8_dist": 9.856, "CNNC_torsion": -6.314, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.68],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 5.514, "planarity": 0.115, "simple_Shear": 0.099, "simple_Stretch": -0.164, "simple_Buckle": 4.402, "simple_Propeller": -3.321, "bp_simpleParams": [ 0.099, -0.164, 0.304, 4.402, -3.321, 1.441 ], "bp_params": [ 0.098, -0.164, 0.304, 4.384, -3.344, 1.441 ], "frame": { "rmsd": null, "origin": [ 184.112, 238.860, 258.663 ], "x_axis": [ 0.296, 0.150, -0.943 ], "y_axis": [ -0.824, 0.539, -0.173 ], "z_axis": [ 0.483, 0.829, 0.283 ], "quaternion": [ 0.728, -0.344, 0.490, 0.335 ] } }, { "index": 669, "nt1": "///A/1451", "nt2": "///A/1636", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -154.651, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.387, "chi2": 171.633, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.736, "C1C1_dist": 10.197, "N1N9_dist": 8.618, "C6C8_dist": 9.699, "CNNC_torsion": 4.496, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.68],O4(carbonyl)-N6(amino)[2.99]", "interBase_angle": 5.691, "planarity": 0.068, "simple_Shear": 0.010, "simple_Stretch": -0.220, "simple_Buckle": 4.646, "simple_Propeller": 3.286, "bp_simpleParams": [ 0.010, -0.220, -0.179, 4.646, 3.286, 5.753 ], "bp_params": [ 0.011, -0.220, -0.179, 4.633, 3.304, 5.751 ], "frame": { "rmsd": null, "origin": [ 187.518, 240.180, 259.524 ], "x_axis": [ -0.243, 0.362, -0.900 ], "y_axis": [ -0.826, 0.410, 0.388 ], "z_axis": [ 0.509, 0.837, 0.200 ], "quaternion": [ 0.585, -0.192, 0.603, 0.508 ] } }, { "index": 670, "nt1": "///A/1452", "nt2": "///A/1635", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.478, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.918, "chi2": -165.221, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.889, "C1C1_dist": 10.752, "N1N9_dist": 8.930, "C6C8_dist": 9.843, "CNNC_torsion": -3.522, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.88]", "interBase_angle": 3.562, "planarity": 0.059, "simple_Shear": 0.185, "simple_Stretch": -0.174, "simple_Buckle": 3.361, "simple_Propeller": -1.180, "bp_simpleParams": [ 0.185, -0.174, 0.074, 3.361, -1.180, -0.626 ], "bp_params": [ 0.183, -0.176, 0.074, 3.345, -1.226, -0.626 ], "frame": { "rmsd": null, "origin": [ 190.718, 242.399, 259.069 ], "x_axis": [ -0.624, 0.480, -0.617 ], "y_axis": [ -0.580, 0.246, 0.777 ], "z_axis": [ 0.524, 0.842, 0.125 ], "quaternion": [ 0.432, -0.038, 0.660, 0.613 ] } }, { "index": 671, "nt1": "///A/1453", "nt2": "///A/1634", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.419, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.641, "chi2": -164.752, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.870, "C1C1_dist": 10.153, "N1N9_dist": 8.646, "C6C8_dist": 9.750, "CNNC_torsion": 2.152, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.01],N1-N3(imino)[2.72]", "interBase_angle": 2.682, "planarity": 0.040, "simple_Shear": -0.009, "simple_Stretch": -0.181, "simple_Buckle": -0.144, "simple_Propeller": 2.678, "bp_simpleParams": [ -0.009, -0.181, -0.121, -0.144, 2.678, 6.271 ], "bp_params": [ -0.010, -0.181, -0.121, -0.133, 2.679, 6.272 ], "frame": { "rmsd": null, "origin": [ 192.474, 245.104, 257.612 ], "x_axis": [ -0.911, 0.396, -0.113 ], "y_axis": [ -0.129, -0.012, 0.992 ], "z_axis": [ 0.392, 0.918, 0.062 ], "quaternion": [ 0.186, 0.099, 0.678, 0.705 ] } }, { "index": 672, "nt1": "///A/1454", "nt2": "///A/1633", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.407, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.092, "chi2": 175.842, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.481, "C1C1_dist": 10.679, "N1N9_dist": 8.935, "C6C8_dist": 9.877, "CNNC_torsion": -0.129, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 3.593, "planarity": 0.077, "simple_Shear": 0.242, "simple_Stretch": -0.143, "simple_Buckle": 2.308, "simple_Propeller": 2.754, "bp_simpleParams": [ 0.242, -0.143, 0.156, 2.308, 2.754, 0.868 ], "bp_params": [ 0.239, -0.147, 0.156, 2.361, 2.709, 0.868 ], "frame": { "rmsd": null, "origin": [ 192.822, 248.531, 256.514 ], "x_axis": [ -0.824, 0.274, 0.495 ], "y_axis": [ 0.449, -0.216, 0.867 ], "z_axis": [ 0.344, 0.937, 0.056 ], "quaternion": [ -0.061, 0.290, 0.623, 0.724 ] } }, { "index": 673, "nt1": "///A/1455", "nt2": "///A/1632", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.099, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.235, "chi2": -155.502, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.942, "C1C1_dist": 10.550, "N1N9_dist": 8.860, "C6C8_dist": 9.830, "CNNC_torsion": 4.626, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.69],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 12.092, "planarity": 0.147, "simple_Shear": 0.195, "simple_Stretch": -0.140, "simple_Buckle": 12.002, "simple_Propeller": 1.476, "bp_simpleParams": [ 0.195, -0.140, -0.344, 12.002, 1.476, 1.581 ], "bp_params": [ 0.193, -0.143, -0.344, 12.025, 1.276, 1.572 ], "frame": { "rmsd": null, "origin": [ 192.666, 251.609, 255.080 ], "x_axis": [ -0.578, 0.099, 0.810 ], "y_axis": [ 0.775, -0.245, 0.583 ], "z_axis": [ 0.255, 0.965, 0.065 ], "quaternion": [ -0.246, 0.388, 0.563, 0.687 ] } }, { "index": 674, "nt1": "///A/1456", "nt2": "///A/1631", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -176.290, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 90.817, "chi2": -142.045, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 55.009, "C1C1_dist": 9.134, "N1N9_dist": 8.734, "C6C8_dist": 10.916, "CNNC_torsion": 171.957, "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-N1[2.97]", "interBase_angle": 12.311, "planarity": 0.139, "simple_Shear": 6.495, "simple_Stretch": 4.251, "simple_Buckle": 11.672, "simple_Propeller": -3.915, "bp_simpleParams": [ 6.495, 4.251, -0.041, 11.672, -3.915, -144.724 ], "bp_params": [ -1.511, -7.614, -0.041, -10.962, -5.604, -144.611 ], "frame": { "rmsd": null, "origin": [ 194.378, 255.240, 251.940 ], "x_axis": [ 0.898, -0.158, 0.411 ], "y_axis": [ 0.421, 0.036, -0.906 ], "z_axis": [ 0.129, 0.987, 0.099 ], "quaternion": [ 0.713, -0.664, -0.099, -0.203 ] } }, { "index": 675, "nt1": "///A/1460", "nt2": "///A/1631", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -113.538, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 96.079, "chi2": -142.045, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 16.188, "C1C1_dist": 8.516, "N1N9_dist": 7.378, "C6C8_dist": 7.798, "CNNC_torsion": 87.688, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[2.96],N2(amino)-N7[2.68],N3-N6(amino)[3.11]", "interBase_angle": 4.537, "planarity": 0.424, "simple_Shear": 7.448, "simple_Stretch": 1.149, "simple_Buckle": -1.322, "simple_Propeller": -4.340, "bp_simpleParams": [ 7.448, 1.149, -1.918, -1.322, -4.340, -4.129 ], "bp_params": [ 5.730, -4.894, -1.918, -4.151, -1.831, -4.127 ], "frame": { "rmsd": null, "origin": [ 196.824, 256.857, 245.252 ], "x_axis": [ 0.656, 0.054, -0.753 ], "y_axis": [ 0.746, -0.198, 0.635 ], "z_axis": [ -0.115, -0.979, -0.170 ], "quaternion": [ 0.567, 0.711, 0.281, -0.305 ] } }, { "index": 676, "nt1": "///A/1461", "nt2": "///A/1630", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -161.464, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 9.868, "chi2": -172.112, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 100.922, "C1C1_dist": 9.772, "N1N9_dist": 8.682, "C6C8_dist": 9.203, "CNNC_torsion": -7.526, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[3.08],N6(amino)-O2'(hydroxyl)[2.75],N6(amino)-N3[2.96]", "interBase_angle": 3.222, "planarity": 0.052, "simple_Shear": -7.356, "simple_Stretch": 2.656, "simple_Buckle": -2.486, "simple_Propeller": -2.049, "bp_simpleParams": [ -7.356, 2.656, -0.125, -2.486, -2.049, 0.418 ], "bp_params": [ -6.875, -3.729, -0.125, -0.122, -3.220, 0.409 ], "frame": { "rmsd": null, "origin": [ 197.167, 253.795, 243.681 ], "x_axis": [ 0.292, 0.432, -0.853 ], "y_axis": [ 0.874, 0.242, 0.421 ], "z_axis": [ 0.388, -0.869, -0.307 ], "quaternion": [ 0.554, 0.582, 0.561, -0.200 ] } }, { "index": 677, "nt1": "///A/1462", "nt2": "///A/1629", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.939, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.802, "chi2": 179.370, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.579, "C1C1_dist": 10.583, "N1N9_dist": 8.836, "C6C8_dist": 9.795, "CNNC_torsion": 4.440, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.86],N2(amino)-O2(carbonyl)[2.69]", "interBase_angle": 4.927, "planarity": 0.153, "simple_Shear": -0.184, "simple_Stretch": -0.248, "simple_Buckle": -3.884, "simple_Propeller": -3.031, "bp_simpleParams": [ -0.184, -0.248, -0.749, -3.884, -3.031, 1.531 ], "bp_params": [ -0.181, -0.251, -0.749, -3.843, -3.083, 1.530 ], "frame": { "rmsd": null, "origin": [ 198.570, 251.028, 241.548 ], "x_axis": [ 0.875, 0.469, -0.125 ], "y_axis": [ 0.264, -0.245, 0.933 ], "z_axis": [ 0.407, -0.849, -0.338 ], "quaternion": [ 0.568, 0.784, 0.234, 0.090 ] } }, { "index": 678, "nt1": "///A/1463", "nt2": "///A/1628", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.021, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.001, "chi2": -167.287, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.310, "C1C1_dist": 10.743, "N1N9_dist": 8.934, "C6C8_dist": 9.849, "CNNC_torsion": 0.311, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 4.905, "planarity": 0.155, "simple_Shear": 0.168, "simple_Stretch": -0.173, "simple_Buckle": -3.972, "simple_Propeller": -2.878, "bp_simpleParams": [ 0.168, -0.173, -0.466, -3.972, -2.878, -0.323 ], "bp_params": [ 0.166, -0.175, -0.466, -4.008, -2.828, -0.323 ], "frame": { "rmsd": null, "origin": [ 199.503, 248.917, 238.604 ], "x_axis": [ 0.852, 0.303, 0.428 ], "y_axis": [ -0.282, -0.424, 0.861 ], "z_axis": [ 0.442, -0.853, -0.276 ], "quaternion": [ 0.537, 0.799, 0.007, 0.272 ] } }, { "index": 679, "nt1": "///A/1464", "nt2": "///A/1627", "bp": "A-A", "name": "~Sheared", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": 169.900, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 85.362, "chi2": -172.800, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 4.381, "C1C1_dist": 10.037, "N1N9_dist": 8.558, "C6C8_dist": 8.795, "CNNC_torsion": -171.700, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[3.17],N3-N6(amino)[3.02]", "interBase_angle": 3.767, "planarity": 0.059, "simple_Shear": 7.254, "simple_Stretch": 2.437, "simple_Buckle": -0.121, "simple_Propeller": -3.765, "bp_simpleParams": [ 7.254, 2.437, 0.223, -0.121, -3.765, -18.653 ], "bp_params": [ 6.611, -3.854, 0.223, -2.913, -2.388, -18.651 ], "frame": { "rmsd": null, "origin": [ 200.990, 246.631, 236.431 ], "x_axis": [ 0.148, -0.114, 0.982 ], "y_axis": [ -0.885, -0.459, 0.080 ], "z_axis": [ 0.442, -0.881, -0.169 ], "quaternion": [ 0.361, 0.666, -0.375, 0.534 ] } }, { "index": 680, "nt1": "///A/1465", "nt2": "///A/1626", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -178.982, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 18.700, "chi2": -168.426, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 28.284, "C1C1_dist": 9.882, "N1N9_dist": 7.289, "C6C8_dist": 6.242, "CNNC_torsion": 176.845, "hbonds_num": 2, "hbonds_desc": "N7-N3(imino)[2.86],N6(amino)-O2(carbonyl)[2.88]", "interBase_angle": 1.250, "planarity": 0.096, "simple_Shear": -4.015, "simple_Stretch": 1.214, "simple_Buckle": -0.685, "simple_Propeller": -1.045, "bp_simpleParams": [ -4.015, 1.214, -0.547, -0.685, -1.045, -99.549 ], "bp_params": [ -3.869, -1.620, -0.547, 0.137, -1.242, -99.552 ], "frame": { "rmsd": null, "origin": [ 202.631, 244.855, 230.744 ], "x_axis": [ 0.167, 0.012, 0.986 ], "y_axis": [ -0.843, -0.517, 0.149 ], "z_axis": [ 0.511, -0.856, -0.076 ], "quaternion": [ 0.379, 0.663, -0.313, 0.564 ] } }, { "index": 681, "nt1": "///A/1467", "nt2": "///A/1540", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -174.069, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 127.544, "chi2": -179.794, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 19.854, "C1C1_dist": 9.229, "N1N9_dist": 8.827, "C6C8_dist": 9.586, "CNNC_torsion": 100.687, "hbonds_num": 1, "hbonds_desc": "N3-N6(amino)[3.63]", "interBase_angle": 64.128, "planarity": 0.739, "simple_Shear": 1.268, "simple_Stretch": 6.092, "simple_Buckle": -43.001, "simple_Propeller": -47.574, "bp_simpleParams": [ 1.268, 6.092, 1.090, -43.001, -47.574, -45.708 ], "bp_params": [ 5.081, -3.592, 1.090, -26.856, 58.233, -50.499 ], "frame": { "rmsd": null, "origin": [ 205.065, 243.917, 230.483 ], "x_axis": [ -0.582, -0.812, 0.039 ], "y_axis": [ 0.019, -0.061, -0.998 ], "z_axis": [ 0.813, -0.581, 0.051 ], "quaternion": [ -0.319, 0.327, -0.606, 0.651 ] } }, { "index": 682, "nt1": "///A/1467", "nt2": "///A/1541", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -174.069, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 99.706, "chi2": -173.767, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 41.994, "C1C1_dist": 10.322, "N1N9_dist": 9.704, "C6C8_dist": 11.102, "CNNC_torsion": 122.722, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N1[3.64]", "interBase_angle": 64.679, "planarity": 0.922, "simple_Shear": 2.824, "simple_Stretch": 5.177, "simple_Buckle": -55.828, "simple_Propeller": -32.660, "bp_simpleParams": [ 2.824, 5.177, -2.453, -55.828, -32.660, -88.643 ], "bp_params": [ 3.335, -4.864, -2.453, -2.121, 64.644, -98.250 ], "frame": { "rmsd": null, "origin": [ 206.492, 242.867, 230.828 ], "x_axis": [ -0.522, -0.771, -0.366 ], "y_axis": [ 0.259, 0.265, -0.929 ], "z_axis": [ 0.813, -0.580, 0.061 ], "quaternion": [ 0.448, -0.195, 0.657, -0.574 ] } }, { "index": 683, "nt1": "///A/1467", "nt2": "///A/1625", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.069, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.163, "chi2": -157.241, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.817, "C1C1_dist": 10.538, "N1N9_dist": 8.809, "C6C8_dist": 9.757, "CNNC_torsion": 6.853, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 3.670, "planarity": 0.205, "simple_Shear": -0.203, "simple_Stretch": -0.306, "simple_Buckle": -3.343, "simple_Propeller": -1.515, "bp_simpleParams": [ -0.203, -0.306, -0.998, -3.343, -1.515, 0.665 ], "bp_params": [ -0.199, -0.309, -0.998, -3.319, -1.565, 0.665 ], "frame": { "rmsd": null, "origin": [ 204.050, 241.140, 232.252 ], "x_axis": [ -0.764, -0.423, 0.488 ], "y_axis": [ -0.494, -0.105, -0.863 ], "z_axis": [ 0.416, -0.900, -0.129 ], "quaternion": [ -0.027, -0.343, 0.668, -0.660 ] } }, { "index": 684, "nt1": "///A/1468", "nt2": "///A/1624", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.927, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 45.269, "chi2": -165.244, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 65.085, "C1C1_dist": 10.483, "N1N9_dist": 8.832, "C6C8_dist": 9.791, "CNNC_torsion": 6.870, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[3.02],N1(imino)-O2(carbonyl)[2.85],N2(amino)-O2(carbonyl)[3.20]", "interBase_angle": 11.965, "planarity": 0.150, "simple_Shear": -1.853, "simple_Stretch": -0.001, "simple_Buckle": -9.139, "simple_Propeller": 7.722, "bp_simpleParams": [ -1.853, -0.001, -0.449, -9.139, 7.722, 1.412 ], "bp_params": [ -1.821, -0.342, -0.449, -10.406, 5.905, 1.408 ], "frame": { "rmsd": null, "origin": [ 205.921, 237.882, 233.777 ], "x_axis": [ -0.952, -0.298, 0.067 ], "y_axis": [ -0.127, 0.188, -0.974 ], "z_axis": [ 0.278, -0.936, -0.216 ], "quaternion": [ 0.069, -0.138, 0.767, -0.622 ] } }, { "index": 685, "nt1": "///A/1469", "nt2": "///A/1623", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.392, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.893, "chi2": -162.675, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.024, "C1C1_dist": 10.739, "N1N9_dist": 8.963, "C6C8_dist": 9.888, "CNNC_torsion": 1.150, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.81]", "interBase_angle": 4.970, "planarity": 0.067, "simple_Shear": -0.195, "simple_Stretch": -0.127, "simple_Buckle": 0.191, "simple_Propeller": 4.966, "bp_simpleParams": [ -0.195, -0.127, 0.103, 0.191, 4.966, -0.255 ], "bp_params": [ -0.193, -0.130, 0.103, 0.117, 4.968, -0.242 ], "frame": { "rmsd": null, "origin": [ 206.268, 234.726, 234.153 ], "x_axis": [ -0.854, -0.048, -0.518 ], "y_axis": [ 0.468, 0.364, -0.806 ], "z_axis": [ 0.227, -0.930, -0.288 ], "quaternion": [ 0.235, 0.133, 0.792, -0.548 ] } }, { "index": 686, "nt1": "///A/1470", "nt2": "///A/1622", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.246, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.497, "chi2": -173.536, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.012, "C1C1_dist": 10.705, "N1N9_dist": 8.919, "C6C8_dist": 9.847, "CNNC_torsion": 2.634, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 9.432, "planarity": 0.127, "simple_Shear": -0.205, "simple_Stretch": -0.142, "simple_Buckle": 7.835, "simple_Propeller": 5.252, "bp_simpleParams": [ -0.205, -0.142, -0.126, 7.835, 5.252, 0.032 ], "bp_params": [ -0.203, -0.145, -0.126, 7.759, 5.363, 0.032 ], "frame": { "rmsd": null, "origin": [ 205.420, 231.388, 234.281 ], "x_axis": [ -0.459, 0.253, -0.852 ], "y_axis": [ 0.877, 0.281, -0.390 ], "z_axis": [ 0.141, -0.926, -0.351 ], "quaternion": [ 0.343, 0.391, 0.723, -0.455 ] } }, { "index": 687, "nt1": "///A/1471", "nt2": "///A/1621", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -137.919, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 87.801, "chi2": 173.645, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 16.339, "C1C1_dist": 11.598, "N1N9_dist": 10.186, "C6C8_dist": 10.721, "CNNC_torsion": 6.494, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O6(carbonyl)[2.61]", "interBase_angle": 12.269, "planarity": 0.268, "simple_Shear": 6.263, "simple_Stretch": 3.050, "simple_Buckle": 12.138, "simple_Propeller": -1.782, "bp_simpleParams": [ 6.263, 3.050, -1.048, 12.138, -1.782, -3.675 ], "bp_params": [ 6.780, -1.596, -1.048, 8.283, -9.051, -3.677 ], "frame": { "rmsd": null, "origin": [ 204.491, 227.828, 233.099 ], "x_axis": [ 0.561, 0.289, -0.776 ], "y_axis": [ 0.822, -0.301, 0.483 ], "z_axis": [ -0.094, -0.909, -0.406 ], "quaternion": [ 0.462, 0.753, 0.369, -0.289 ] } }, { "index": 688, "nt1": "///A/1472", "nt2": "///A/1620", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -143.058, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 94.053, "chi2": 179.302, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 8.524, "C1C1_dist": 9.465, "N1N9_dist": 8.215, "C6C8_dist": 8.594, "CNNC_torsion": 104.386, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[3.01],N2(amino)-N7[2.90],N3-N6(amino)[2.93]", "interBase_angle": 13.032, "planarity": 0.312, "simple_Shear": 7.381, "simple_Stretch": 2.095, "simple_Buckle": 13.032, "simple_Propeller": -0.042, "bp_simpleParams": [ 7.381, 2.095, -1.162, 13.032, -0.042, -6.403 ], "bp_params": [ 6.439, -4.173, -1.162, 8.553, -9.833, -6.409 ], "frame": { "rmsd": null, "origin": [ 203.882, 225.468, 230.682 ], "x_axis": [ 0.938, 0.008, -0.347 ], "y_axis": [ 0.288, -0.574, 0.767 ], "z_axis": [ -0.193, -0.819, -0.540 ], "quaternion": [ 0.454, 0.873, 0.085, -0.154 ] } }, { "index": 689, "nt1": "///A/1473", "nt2": "///A/1619", "bp": "A+A", "name": "--", "Saenger": "02-II", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": -119.117, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 15.773, "chi2": -169.644, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 16.683, "C1C1_dist": 11.303, "N1N9_dist": 8.512, "C6C8_dist": 6.779, "CNNC_torsion": -116.514, "hbonds_num": 3, "hbonds_desc": "N7-N6(amino)[3.60],N6(amino)-OP2[3.19],N6(amino)-N7[3.02]", "interBase_angle": 16.561, "planarity": 0.377, "simple_Shear": -7.483, "simple_Stretch": 0.420, "simple_Buckle": -12.923, "simple_Propeller": -10.358, "bp_simpleParams": [ -7.483, 0.420, 1.877, -12.923, -10.358, -164.449 ], "bp_params": [ -5.495, 5.097, 1.877, -16.559, 0.279, -164.287 ], "frame": { "rmsd": null, "origin": [ 204.158, 223.090, 227.885 ], "x_axis": [ -0.139, -0.530, 0.836 ], "y_axis": [ 0.943, -0.328, -0.050 ], "z_axis": [ 0.301, 0.782, 0.546 ], "quaternion": [ 0.519, -0.401, -0.258, -0.709 ] } }, { "index": 690, "nt1": "///A/1474", "nt2": "///A/1618", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -97.065, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 22.837, "chi2": -165.648, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 37.005, "C1C1_dist": 11.451, "N1N9_dist": 8.993, "C6C8_dist": 7.489, "CNNC_torsion": -110.632, "hbonds_num": 2, "hbonds_desc": "N4(amino)-OP2[2.26],N4(amino)-N7[3.94]", "interBase_angle": 31.168, "planarity": 0.478, "simple_Shear": 2.246, "simple_Stretch": 4.263, "simple_Buckle": 19.314, "simple_Propeller": 24.462, "bp_simpleParams": [ 2.246, 4.263, -0.798, 19.314, 24.462, -134.438 ], "bp_params": [ 4.414, 1.932, -0.798, 30.333, 7.166, -133.048 ], "frame": { "rmsd": null, "origin": [ 202.724, 219.352, 227.040 ], "x_axis": [ 0.963, 0.011, -0.268 ], "y_axis": [ 0.183, -0.758, 0.626 ], "z_axis": [ -0.196, -0.652, -0.732 ], "quaternion": [ 0.344, 0.929, 0.052, -0.125 ] } }, { "index": 691, "nt1": "///A/1475", "nt2": "///A/1612", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.197, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.011, "chi2": -155.377, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.847, "C1C1_dist": 10.802, "N1N9_dist": 8.964, "C6C8_dist": 9.855, "CNNC_torsion": -5.671, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.82]", "interBase_angle": 4.809, "planarity": 0.126, "simple_Shear": -0.192, "simple_Stretch": -0.167, "simple_Buckle": 2.150, "simple_Propeller": 4.302, "bp_simpleParams": [ -0.192, -0.167, 0.558, 2.150, 4.302, -0.380 ], "bp_params": [ -0.189, -0.169, 0.558, 2.090, 4.331, -0.380 ], "frame": { "rmsd": null, "origin": [ 220.495, 208.892, 226.805 ], "x_axis": [ 0.258, 0.633, 0.730 ], "y_axis": [ -0.893, 0.445, -0.070 ], "z_axis": [ -0.369, -0.634, 0.680 ], "quaternion": [ 0.772, 0.183, -0.356, 0.494 ] } }, { "index": 692, "nt1": "///A/1476", "nt2": "///A/1611", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.458, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.772, "chi2": -170.737, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.000, "C1C1_dist": 10.648, "N1N9_dist": 8.908, "C6C8_dist": 9.843, "CNNC_torsion": -8.795, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.80],N3-N1(imino)[2.94],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 3.736, "planarity": 0.200, "simple_Shear": 0.172, "simple_Stretch": -0.195, "simple_Buckle": 3.734, "simple_Propeller": 0.126, "bp_simpleParams": [ 0.172, -0.195, 0.728, 3.734, 0.126, 0.469 ], "bp_params": [ 0.170, -0.197, 0.728, 3.735, 0.078, 0.469 ], "frame": { "rmsd": null, "origin": [ 220.622, 206.560, 229.510 ], "x_axis": [ -0.332, 0.820, 0.466 ], "y_axis": [ -0.857, -0.056, -0.513 ], "z_axis": [ -0.394, -0.570, 0.721 ], "quaternion": [ 0.577, 0.025, -0.373, 0.726 ] } }, { "index": 693, "nt1": "///A/1477", "nt2": "///A/1607", "bp": "A-C", "name": "~rHoogsteen", "Saenger": "25-XXV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -170.542, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 14.310, "chi2": -131.384, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 26.917, "C1C1_dist": 11.255, "N1N9_dist": 8.584, "C6C8_dist": 7.529, "CNNC_torsion": 162.943, "hbonds_num": 2, "hbonds_desc": "N7-N4(amino)[3.46],N6(amino)-N3[3.48]", "interBase_angle": 23.713, "planarity": 0.233, "simple_Shear": -3.260, "simple_Stretch": 1.617, "simple_Buckle": 18.335, "simple_Propeller": 15.038, "bp_simpleParams": [ -3.260, 1.617, 0.843, 18.335, 15.038, -93.613 ], "bp_params": [ -3.634, -0.194, 0.843, 8.609, 22.095, -94.520 ], "frame": { "rmsd": null, "origin": [ 219.007, 204.990, 232.090 ], "x_axis": [ -0.954, 0.027, -0.298 ], "y_axis": [ 0.161, -0.793, -0.587 ], "z_axis": [ -0.252, -0.608, 0.753 ], "quaternion": [ -0.036, -0.147, -0.320, 0.935 ] } }, { "index": 694, "nt1": "///A/1477", "nt2": "///A/1610", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.542, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.427, "chi2": -164.512, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.672, "C1C1_dist": 10.724, "N1N9_dist": 8.876, "C6C8_dist": 9.707, "CNNC_torsion": -16.178, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.90],N1-N3(imino)[2.87]", "interBase_angle": 8.015, "planarity": 0.220, "simple_Shear": 0.044, "simple_Stretch": -0.240, "simple_Buckle": -3.106, "simple_Propeller": -7.389, "bp_simpleParams": [ 0.044, -0.240, 0.779, -3.106, -7.389, -4.994 ], "bp_params": [ 0.041, -0.240, 0.779, -3.176, -7.359, -5.002 ], "frame": { "rmsd": null, "origin": [ 220.752, 204.869, 232.635 ], "x_axis": [ -0.695, 0.718, 0.014 ], "y_axis": [ -0.542, -0.511, -0.667 ], "z_axis": [ -0.472, -0.472, 0.744 ], "quaternion": [ 0.367, -0.133, -0.332, 0.859 ] } }, { "index": 695, "nt1": "///A/1478", "nt2": "///A/1609", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.820, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.878, "chi2": -166.467, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.340, "C1C1_dist": 10.870, "N1N9_dist": 8.981, "C6C8_dist": 9.838, "CNNC_torsion": -13.419, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.95],N2(amino)-O2(carbonyl)[2.86]", "interBase_angle": 6.632, "planarity": 0.198, "simple_Shear": -0.199, "simple_Stretch": -0.186, "simple_Buckle": -5.008, "simple_Propeller": -4.348, "bp_simpleParams": [ -0.199, -0.186, 0.653, -5.008, -4.348, -2.501 ], "bp_params": [ -0.196, -0.189, 0.653, -4.947, -4.417, -2.501 ], "frame": { "rmsd": null, "origin": [ 219.724, 204.255, 235.885 ], "x_axis": [ -0.862, 0.298, -0.410 ], "y_axis": [ -0.031, -0.838, -0.545 ], "z_axis": [ -0.506, -0.457, 0.731 ], "quaternion": [ 0.089, -0.247, -0.270, 0.926 ] } }, { "index": 696, "nt1": "///A/1479", "nt2": "///A/1608", "bp": "G-A", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.581, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 36.277, "chi2": -179.202, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 42.685, "C1C1_dist": 12.933, "N1N9_dist": 10.668, "C6C8_dist": 10.788, "CNNC_torsion": -11.807, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N6(amino)[2.59],N1(imino)-N1[2.93]", "interBase_angle": 5.321, "planarity": 0.154, "simple_Shear": -0.812, "simple_Stretch": 1.306, "simple_Buckle": -5.156, "simple_Propeller": -1.316, "bp_simpleParams": [ -0.812, 1.306, 0.579, -5.156, -1.316, -29.203 ], "bp_params": [ -0.919, 1.233, 0.579, -5.027, -1.745, -29.179 ], "frame": { "rmsd": null, "origin": [ 218.836, 204.152, 239.498 ], "x_axis": [ -0.759, -0.177, -0.627 ], "y_axis": [ 0.402, -0.885, -0.237 ], "z_axis": [ -0.513, -0.432, 0.742 ], "quaternion": [ -0.157, -0.310, -0.182, 0.920 ] } }, { "index": 697, "nt1": "///A/1480", "nt2": "///A/1606", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "c.W", "DSSR": "c.-W", "intra_chain": true, "chi1": -21.647, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 20.264, "chi2": -139.782, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 32.739, "C1C1_dist": 13.892, "N1N9_dist": 11.288, "C6C8_dist": 10.726, "CNNC_torsion": -1.366, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N1[3.10]", "interBase_angle": 24.650, "planarity": 0.352, "simple_Shear": -1.165, "simple_Stretch": 2.434, "simple_Buckle": 20.182, "simple_Propeller": -14.154, "bp_simpleParams": [ -1.165, 2.434, 0.083, 20.182, -14.154, -58.687 ], "bp_params": [ -1.514, 2.234, 0.083, 22.086, -10.947, -58.003 ], "frame": { "rmsd": null, "origin": [ 216.638, 203.593, 242.401 ], "x_axis": [ 0.142, 0.659, 0.738 ], "y_axis": [ 0.755, -0.554, 0.350 ], "z_axis": [ 0.640, 0.508, -0.576 ], "quaternion": [ -0.052, 0.754, 0.469, 0.457 ] } }, { "index": 698, "nt1": "///A/1481", "nt2": "///A/1605", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.459, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.372, "chi2": -141.466, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.981, "C1C1_dist": 10.662, "N1N9_dist": 8.877, "C6C8_dist": 9.791, "CNNC_torsion": -8.131, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 18.189, "planarity": 0.196, "simple_Shear": -0.303, "simple_Stretch": -0.159, "simple_Buckle": -14.079, "simple_Propeller": -11.516, "bp_simpleParams": [ -0.303, -0.159, -0.540, -14.079, -11.516, 1.293 ], "bp_params": [ -0.300, -0.164, -0.540, -13.873, -11.763, 1.290 ], "frame": { "rmsd": null, "origin": [ 214.857, 203.159, 245.526 ], "x_axis": [ -0.176, -0.538, -0.825 ], "y_axis": [ 0.746, -0.619, 0.245 ], "z_axis": [ -0.642, -0.573, 0.510 ], "quaternion": [ -0.423, -0.483, -0.108, 0.759 ] } }, { "index": 699, "nt1": "///A/1482", "nt2": "///A/1562", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -162.328, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 88.482, "chi2": 4.796, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 39.840, "C1C1_dist": 8.104, "N1N9_dist": 7.325, "C6C8_dist": 7.423, "CNNC_torsion": 159.667, "hbonds_num": 0, "hbonds_desc": "", "interBase_angle": 29.313, "planarity": 0.377, "simple_Shear": 8.645, "simple_Stretch": 6.071, "simple_Buckle": -29.009, "simple_Propeller": -4.209, "bp_simpleParams": [ 8.645, 6.071, -1.050, -29.009, -4.209, -53.184 ], "bp_params": [ 7.098, -7.824, -1.050, -7.694, 28.285, -54.507 ], "frame": { "rmsd": null, "origin": [ 211.868, 205.984, 250.770 ], "x_axis": [ 0.504, -0.858, -0.103 ], "y_axis": [ 0.548, 0.225, 0.806 ], "z_axis": [ -0.668, -0.462, 0.583 ], "quaternion": [ 0.760, 0.417, -0.186, -0.462 ] } }, { "index": 700, "nt1": "///A/1482", "nt2": "///A/1604", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.328, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.349, "chi2": -149.845, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.534, "C1C1_dist": 10.385, "N1N9_dist": 8.758, "C6C8_dist": 9.723, "CNNC_torsion": 5.555, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.71]", "interBase_angle": 13.546, "planarity": 0.218, "simple_Shear": -0.170, "simple_Stretch": -0.298, "simple_Buckle": -13.307, "simple_Propeller": -2.530, "bp_simpleParams": [ -0.170, -0.298, -1.174, -13.307, -2.530, 1.841 ], "bp_params": [ -0.166, -0.300, -1.174, -13.280, -2.669, 1.829 ], "frame": { "rmsd": null, "origin": [ 211.668, 201.836, 247.290 ], "x_axis": [ 0.306, -0.744, -0.594 ], "y_axis": [ 0.761, -0.183, 0.622 ], "z_axis": [ -0.572, -0.642, 0.510 ], "quaternion": [ 0.639, 0.495, 0.009, -0.589 ] } }, { "index": 701, "nt1": "///A/1483", "nt2": "///A/1603", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.976, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.571, "chi2": -162.224, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.641, "C1C1_dist": 10.555, "N1N9_dist": 8.889, "C6C8_dist": 9.859, "CNNC_torsion": 3.613, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.01],N1-N3(imino)[2.88]", "interBase_angle": 9.333, "planarity": 0.120, "simple_Shear": 0.134, "simple_Stretch": -0.068, "simple_Buckle": -9.318, "simple_Propeller": 0.532, "bp_simpleParams": [ 0.134, -0.068, -0.579, -9.318, 0.532, 0.891 ], "bp_params": [ 0.133, -0.071, -0.579, -9.307, 0.696, 0.888 ], "frame": { "rmsd": null, "origin": [ 209.182, 199.200, 247.933 ], "x_axis": [ 0.684, -0.697, -0.214 ], "y_axis": [ 0.513, 0.252, 0.820 ], "z_axis": [ -0.518, -0.671, 0.531 ], "quaternion": [ 0.785, 0.475, -0.097, -0.385 ] } }, { "index": 702, "nt1": "///A/1484", "nt2": "///A/1601", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -177.679, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 35.148, "chi2": 177.526, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 19.971, "C1C1_dist": 9.632, "N1N9_dist": 7.169, "C6C8_dist": 6.348, "CNNC_torsion": -171.942, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.85],N3(imino)-N7[2.99]", "interBase_angle": 3.845, "planarity": 0.112, "simple_Shear": 4.899, "simple_Stretch": 1.400, "simple_Buckle": 3.835, "simple_Propeller": -0.270, "bp_simpleParams": [ 4.899, 1.400, 0.413, 3.835, -0.270, -91.321 ], "bp_params": [ 4.432, -2.513, 0.413, 2.496, -2.925, -91.326 ], "frame": { "rmsd": null, "origin": [ 205.536, 196.531, 247.430 ], "x_axis": [ 0.692, 0.232, 0.683 ], "y_axis": [ -0.572, 0.754, 0.323 ], "z_axis": [ -0.440, -0.615, 0.655 ], "quaternion": [ 0.880, 0.266, -0.319, 0.228 ] } }, { "index": 703, "nt1": "///A/1485", "nt2": "///A/1600", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": 15.079, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 16.503, "chi2": 20.829, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 65.402, "C1C1_dist": 9.947, "N1N9_dist": 8.112, "C6C8_dist": 6.946, "CNNC_torsion": -173.308, "hbonds_num": 1, "hbonds_desc": "N1*N7[3.01]", "interBase_angle": 5.938, "planarity": 0.089, "simple_Shear": 2.370, "simple_Stretch": 6.049, "simple_Buckle": -3.021, "simple_Propeller": 5.112, "bp_simpleParams": [ 2.370, 6.049, 0.021, -3.021, 5.112, -149.486 ], "bp_params": [ 6.496, 0.063, 0.021, 3.613, 4.712, -149.496 ], "frame": { "rmsd": null, "origin": [ 208.449, 193.866, 253.472 ], "x_axis": [ -0.723, 0.032, -0.690 ], "y_axis": [ -0.402, 0.792, 0.459 ], "z_axis": [ 0.561, 0.609, -0.560 ], "quaternion": [ 0.357, -0.105, 0.877, 0.305 ] } }, { "index": 704, "nt1": "///A/1486", "nt2": "///A/1599", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 168.515, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 33.566, "chi2": -165.273, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 65.049, "C1C1_dist": 10.805, "N1N9_dist": 8.968, "C6C8_dist": 9.712, "CNNC_torsion": -2.490, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.83],N1(imino)-O2(carbonyl)[2.97]", "interBase_angle": 3.994, "planarity": 0.089, "simple_Shear": -2.748, "simple_Stretch": 0.117, "simple_Buckle": -0.262, "simple_Propeller": 3.986, "bp_simpleParams": [ -2.748, 0.117, 0.302, -0.262, 3.986, -6.330 ], "bp_params": [ -2.677, -0.634, 0.302, -1.334, 3.765, -6.333 ], "frame": { "rmsd": null, "origin": [ 206.403, 191.419, 254.666 ], "x_axis": [ 0.251, 0.584, 0.772 ], "y_axis": [ -0.769, 0.604, -0.207 ], "z_axis": [ -0.587, -0.542, 0.601 ], "quaternion": [ 0.784, 0.107, -0.434, 0.432 ] } }, { "index": 705, "nt1": "///A/1487", "nt2": "///A/1598", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 171.197, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.713, "chi2": -171.262, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.152, "C1C1_dist": 10.753, "N1N9_dist": 8.954, "C6C8_dist": 9.881, "CNNC_torsion": 0.894, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 5.299, "planarity": 0.087, "simple_Shear": -0.207, "simple_Stretch": -0.132, "simple_Buckle": -0.239, "simple_Propeller": 5.294, "bp_simpleParams": [ -0.207, -0.132, 0.197, -0.239, 5.294, 0.676 ], "bp_params": [ -0.205, -0.135, 0.197, -0.321, 5.290, 0.677 ], "frame": { "rmsd": null, "origin": [ 206.089, 189.461, 257.672 ], "x_axis": [ -0.313, 0.879, 0.359 ], "y_axis": [ -0.737, 0.014, -0.676 ], "z_axis": [ -0.600, -0.476, 0.643 ], "quaternion": [ 0.580, -0.086, -0.413, 0.697 ] } }, { "index": 706, "nt1": "///A/1488", "nt2": "///A/1597", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 175.933, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.879, "chi2": -172.857, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.961, "C1C1_dist": 10.686, "N1N9_dist": 8.909, "C6C8_dist": 9.844, "CNNC_torsion": 4.267, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 5.671, "planarity": 0.070, "simple_Shear": -0.172, "simple_Stretch": -0.166, "simple_Buckle": 1.009, "simple_Propeller": 5.580, "bp_simpleParams": [ -0.172, -0.166, 0.024, 1.009, 5.580, 0.298 ], "bp_params": [ -0.170, -0.168, 0.024, 0.939, 5.592, 0.299 ], "frame": { "rmsd": null, "origin": [ 205.755, 188.285, 261.459 ], "x_axis": [ -0.645, 0.759, -0.089 ], "y_axis": [ -0.494, -0.502, -0.710 ], "z_axis": [ -0.583, -0.414, 0.699 ], "quaternion": [ 0.372, -0.199, -0.333, 0.843 ] } }, { "index": 707, "nt1": "///A/1489", "nt2": "///A/1596", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.034, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 23.587, "chi2": -176.920, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.876, "C1C1_dist": 10.264, "N1N9_dist": 7.997, "C6C8_dist": 8.351, "CNNC_torsion": 12.359, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N3(imino)[2.23]", "interBase_angle": 8.521, "planarity": 0.118, "simple_Shear": -2.808, "simple_Stretch": -0.949, "simple_Buckle": 7.137, "simple_Propeller": 4.656, "bp_simpleParams": [ -2.808, -0.949, -0.124, 7.137, 4.656, -31.536 ], "bp_params": [ -2.416, -1.717, -0.124, 5.497, 6.511, -31.550 ], "frame": { "rmsd": null, "origin": [ 206.245, 187.969, 266.092 ], "x_axis": [ -0.800, 0.453, -0.394 ], "y_axis": [ -0.203, -0.822, -0.532 ], "z_axis": [ -0.565, -0.346, 0.749 ], "quaternion": [ 0.179, -0.261, -0.239, 0.918 ] } }, { "index": 708, "nt1": "///A/1490", "nt2": "///A/1595", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -139.227, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.774, "chi2": -171.237, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.921, "C1C1_dist": 10.438, "N1N9_dist": 8.679, "C6C8_dist": 9.574, "CNNC_torsion": 7.121, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.89],N1-N3(imino)[2.85]", "interBase_angle": 18.397, "planarity": 0.337, "simple_Shear": -0.045, "simple_Stretch": -0.264, "simple_Buckle": 18.286, "simple_Propeller": 2.017, "bp_simpleParams": [ -0.045, -0.264, -0.720, 18.286, 2.017, -1.831 ], "bp_params": [ -0.045, -0.264, -0.720, 18.290, 1.975, -1.808 ], "frame": { "rmsd": null, "origin": [ 203.316, 188.291, 268.170 ], "x_axis": [ -0.682, -0.319, -0.658 ], "y_axis": [ 0.400, -0.916, 0.029 ], "z_axis": [ -0.612, -0.243, 0.752 ], "quaternion": [ -0.196, -0.347, -0.058, 0.915 ] } }, { "index": 709, "nt1": "///A/1491", "nt2": "///A/1512", "bp": "A+G", "name": "--", "Saenger": "--", "LW": ".WW", "DSSR": ".W+W", "intra_chain": true, "chi1": 34.228, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 18.218, "chi2": -155.688, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 62.911, "C1C1_dist": 11.921, "N1N9_dist": 9.932, "C6C8_dist": 10.299, "CNNC_torsion": 93.313, "hbonds_num": 1, "hbonds_desc": "N1-N1(imino)[3.29]", "interBase_angle": 37.093, "planarity": 0.615, "simple_Shear": -0.089, "simple_Stretch": 1.621, "simple_Buckle": 7.559, "simple_Propeller": -36.315, "bp_simpleParams": [ -0.089, 1.621, 1.266, 7.559, -36.315, 117.643 ], "bp_params": [ -1.618, -0.125, 1.266, 36.193, 8.123, 115.164 ], "frame": { "rmsd": null, "origin": [ 199.408, 185.347, 269.027 ], "x_axis": [ -0.534, -0.085, -0.841 ], "y_axis": [ -0.109, 0.993, -0.032 ], "z_axis": [ 0.839, 0.075, -0.540 ], "quaternion": [ 0.480, -0.056, 0.876, 0.012 ] } }, { "index": 710, "nt1": "///A/1492", "nt2": "///A/1511", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.239, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.442, "chi2": -153.212, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.846, "C1C1_dist": 10.538, "N1N9_dist": 8.874, "C6C8_dist": 9.845, "CNNC_torsion": 3.249, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.84],N2(amino)-O2(carbonyl)[2.70]", "interBase_angle": 8.583, "planarity": 0.103, "simple_Shear": -0.114, "simple_Stretch": -0.160, "simple_Buckle": -8.367, "simple_Propeller": 1.912, "bp_simpleParams": [ -0.114, -0.160, -0.279, -8.367, 1.912, 1.083 ], "bp_params": [ -0.113, -0.161, -0.279, -8.383, 1.842, 1.080 ], "frame": { "rmsd": null, "origin": [ 195.631, 184.320, 269.841 ], "x_axis": [ 0.412, -0.884, -0.219 ], "y_axis": [ 0.610, 0.090, 0.788 ], "z_axis": [ -0.677, -0.458, 0.576 ], "quaternion": [ 0.721, 0.432, -0.159, -0.518 ] } }, { "index": 711, "nt1": "///A/1492", "nt2": "///A/1593", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -170.239, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 106.994, "chi2": -166.232, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 150.474, "C1C1_dist": 6.546, "N1N9_dist": 8.304, "C6C8_dist": 10.919, "CNNC_torsion": -24.813, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.31],N2(amino)-N3[3.69]", "interBase_angle": 29.743, "planarity": 0.384, "simple_Shear": -0.505, "simple_Stretch": 8.331, "simple_Buckle": 13.910, "simple_Propeller": -26.290, "bp_simpleParams": [ -0.505, 8.331, 1.640, 13.910, -26.290, 148.815 ], "bp_params": [ -2.454, 7.978, 1.640, 19.594, -22.377, 148.934 ], "frame": { "rmsd": null, "origin": [ 192.897, 187.496, 268.677 ], "x_axis": [ -0.394, -0.251, -0.884 ], "y_axis": [ 0.694, -0.712, -0.107 ], "z_axis": [ -0.603, -0.655, 0.455 ], "quaternion": [ -0.295, -0.464, -0.238, 0.800 ] } }, { "index": 712, "nt1": "///A/1493", "nt2": "///A/1510", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.280, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.867, "chi2": -172.173, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.749, "C1C1_dist": 10.541, "N1N9_dist": 8.862, "C6C8_dist": 9.835, "CNNC_torsion": 0.595, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.68],N3-N1(imino)[2.84],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 4.248, "planarity": 0.060, "simple_Shear": 0.156, "simple_Stretch": -0.175, "simple_Buckle": 3.653, "simple_Propeller": 2.168, "bp_simpleParams": [ 0.156, -0.175, -0.056, 3.653, 2.168, 1.639 ], "bp_params": [ 0.154, -0.177, -0.056, 3.679, 2.125, 1.639 ], "frame": { "rmsd": null, "origin": [ 192.930, 181.882, 269.797 ], "x_axis": [ 0.704, -0.683, 0.196 ], "y_axis": [ 0.304, 0.539, 0.785 ], "z_axis": [ -0.642, -0.493, 0.587 ], "quaternion": [ 0.841, 0.380, -0.249, -0.293 ] } }, { "index": 713, "nt1": "///A/1494", "nt2": "///A/1509", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 174.104, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.948, "chi2": -159.650, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.546, "C1C1_dist": 10.664, "N1N9_dist": 8.896, "C6C8_dist": 9.824, "CNNC_torsion": 4.381, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.86],N2(amino)-O2(carbonyl)[2.70]", "interBase_angle": 7.940, "planarity": 0.113, "simple_Shear": -0.113, "simple_Stretch": -0.182, "simple_Buckle": -7.788, "simple_Propeller": 1.546, "bp_simpleParams": [ -0.113, -0.182, -0.569, -7.788, 1.546, 0.529 ], "bp_params": [ -0.111, -0.183, -0.569, -7.799, 1.490, 0.528 ], "frame": { "rmsd": null, "origin": [ 191.446, 178.945, 271.024 ], "x_axis": [ 0.948, -0.045, 0.316 ], "y_axis": [ -0.193, 0.710, 0.677 ], "z_axis": [ -0.255, -0.702, 0.665 ], "quaternion": [ 0.911, 0.378, -0.157, 0.041 ] } }, { "index": 714, "nt1": "///A/1495", "nt2": "///A/1508", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 171.443, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 29.751, "chi2": -160.143, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.991, "C1C1_dist": 9.823, "N1N9_dist": 7.771, "C6C8_dist": 8.474, "CNNC_torsion": 0.457, "hbonds_num": 1, "hbonds_desc": "N4(amino)-N3[2.33]", "interBase_angle": 11.226, "planarity": 0.133, "simple_Shear": -2.635, "simple_Stretch": -1.199, "simple_Buckle": -6.820, "simple_Propeller": 8.917, "bp_simpleParams": [ -2.635, -1.199, -0.212, -6.820, 8.917, -13.423 ], "bp_params": [ -2.223, -1.855, -0.212, -8.936, 6.795, -13.406 ], "frame": { "rmsd": null, "origin": [ 191.488, 174.766, 271.865 ], "x_axis": [ 0.871, 0.256, 0.419 ], "y_axis": [ -0.457, 0.735, 0.501 ], "z_axis": [ -0.180, -0.628, 0.757 ], "quaternion": [ 0.917, 0.308, -0.163, 0.194 ] } }, { "index": 715, "nt1": "///A/1496", "nt2": "///A/1507", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 168.968, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 42.506, "chi2": -166.233, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 61.710, "C1C1_dist": 10.599, "N1N9_dist": 8.816, "C6C8_dist": 9.700, "CNNC_torsion": 12.244, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.98],N1(imino)-O2(carbonyl)[2.91],N2(amino)-O2(carbonyl)[3.15]", "interBase_angle": 13.011, "planarity": 0.196, "simple_Shear": -1.606, "simple_Stretch": -0.188, "simple_Buckle": 3.689, "simple_Propeller": 12.478, "bp_simpleParams": [ -1.606, -0.188, -0.550, 3.689, 12.478, -2.548 ], "bp_params": [ -1.557, -0.435, -0.550, 1.694, 12.901, -2.564 ], "frame": { "rmsd": null, "origin": [ 193.073, 172.868, 274.425 ], "x_axis": [ 0.473, 0.683, 0.556 ], "y_axis": [ -0.872, 0.454, 0.184 ], "z_axis": [ -0.126, -0.572, 0.810 ], "quaternion": [ 0.827, 0.229, -0.206, 0.470 ] } }, { "index": 716, "nt1": "///A/1497", "nt2": "///A/1505", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -136.244, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 64.959, "chi2": -132.212, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 46.813, "C1C1_dist": 10.207, "N1N9_dist": 8.586, "C6C8_dist": 9.497, "CNNC_torsion": 17.389, "hbonds_num": 2, "hbonds_desc": "N1(imino)-O4(carbonyl)[2.97],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 39.106, "planarity": 0.570, "simple_Shear": 1.309, "simple_Stretch": 0.022, "simple_Buckle": 31.635, "simple_Propeller": 22.989, "bp_simpleParams": [ 1.309, 0.022, -0.702, 31.635, 22.989, -1.861 ], "bp_params": [ 1.295, -0.194, -0.702, 35.097, 17.247, -1.797 ], "frame": { "rmsd": null, "origin": [ 193.823, 170.678, 276.300 ], "x_axis": [ -0.202, 0.846, 0.493 ], "y_axis": [ -0.979, -0.173, -0.105 ], "z_axis": [ -0.004, -0.504, 0.864 ], "quaternion": [ 0.610, 0.164, -0.204, 0.748 ] } }, { "index": 717, "nt1": "///A/1501", "nt2": "///A/2733", "bp": "U-C", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.933, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 37.832, "chi2": -167.632, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.429, "C1C1_dist": 9.891, "N1N9_dist": 7.870, "C6C8_dist": 8.576, "CNNC_torsion": -6.593, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N4(amino)[2.51]", "interBase_angle": 12.104, "planarity": 0.178, "simple_Shear": -1.765, "simple_Stretch": -1.298, "simple_Buckle": -7.216, "simple_Propeller": 9.718, "bp_simpleParams": [ -1.765, -1.298, 0.742, -7.216, 9.718, -14.761 ], "bp_params": [ -1.503, -1.594, 0.742, -8.837, 8.271, -14.756 ], "frame": { "rmsd": null, "origin": [ 196.100, 157.809, 267.826 ], "x_axis": [ -0.767, 0.458, -0.449 ], "y_axis": [ -0.571, -0.806, 0.155 ], "z_axis": [ -0.291, 0.375, 0.880 ], "quaternion": [ 0.277, -0.199, 0.143, 0.929 ] } }, { "index": 718, "nt1": "///A/1502", "nt2": "///A/2732", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.772, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.616, "chi2": -165.584, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.406, "C1C1_dist": 10.746, "N1N9_dist": 8.914, "C6C8_dist": 9.836, "CNNC_torsion": -9.804, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.83]", "interBase_angle": 16.460, "planarity": 0.218, "simple_Shear": -0.276, "simple_Stretch": -0.178, "simple_Buckle": -2.854, "simple_Propeller": -16.210, "bp_simpleParams": [ -0.276, -0.178, -0.385, -2.854, -16.210, 1.088 ], "bp_params": [ -0.272, -0.184, -0.385, -2.498, -16.269, 1.099 ], "frame": { "rmsd": null, "origin": [ 194.212, 160.780, 269.083 ], "x_axis": [ -0.934, -0.222, -0.280 ], "y_axis": [ -0.000, -0.783, 0.622 ], "z_axis": [ -0.357, 0.581, 0.732 ], "quaternion": [ -0.060, -0.171, 0.324, 0.929 ] } }, { "index": 719, "nt1": "///A/1503", "nt2": "///A/2731", "bp": "G+G", "name": "--", "Saenger": "06-VI", "LW": ".HW", "DSSR": ".M+W", "intra_chain": true, "chi1": 8.824, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 11.633, "chi2": 160.527, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 37.635, "C1C1_dist": 12.839, "N1N9_dist": 10.261, "C6C8_dist": 9.967, "CNNC_torsion": -97.574, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-N1(imino)[2.31]", "interBase_angle": 29.536, "planarity": 0.439, "simple_Shear": -2.340, "simple_Stretch": 1.394, "simple_Buckle": 24.842, "simple_Propeller": -15.977, "bp_simpleParams": [ -2.340, 1.394, -0.967, 24.842, -15.977, 133.809 ], "bp_params": [ -0.718, -2.628, -0.967, 8.632, 28.246, 134.944 ], "frame": { "rmsd": null, "origin": [ 192.305, 163.629, 271.311 ], "x_axis": [ -0.901, 0.023, -0.433 ], "y_axis": [ 0.287, 0.780, -0.556 ], "z_axis": [ 0.325, -0.625, -0.710 ], "quaternion": [ 0.206, 0.084, 0.921, -0.321 ] } }, { "index": 720, "nt1": "///A/1513", "nt2": "///A/1572", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -148.082, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 60.680, "chi2": -129.544, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 51.064, "C1C1_dist": 10.152, "N1N9_dist": 8.509, "C6C8_dist": 9.465, "CNNC_torsion": 10.192, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.48],N3(imino)*N1(imino)[2.79],O4(carbonyl)*O6(carbonyl)[2.83]", "unusual_base2base_hbonds": 2, "interBase_angle": 7.286, "planarity": 0.161, "simple_Shear": 0.861, "simple_Stretch": -0.503, "simple_Buckle": -5.154, "simple_Propeller": 5.149, "bp_simpleParams": [ 0.861, -0.503, -0.448, -5.154, 5.149, 0.366 ], "bp_params": [ 0.818, -0.571, -0.448, -4.720, 5.550, 0.366 ], "frame": { "rmsd": null, "origin": [ 189.640, 200.035, 266.585 ], "x_axis": [ 0.284, 0.180, 0.942 ], "y_axis": [ 0.861, -0.481, -0.167 ], "z_axis": [ 0.423, 0.858, -0.291 ], "quaternion": [ -0.358, 0.717, 0.363, 0.476 ] } }, { "index": 721, "nt1": "///A/1514", "nt2": "///A/1571", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.714, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.554, "chi2": 175.092, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.351, "C1C1_dist": 10.622, "N1N9_dist": 8.869, "C6C8_dist": 9.797, "CNNC_torsion": 5.403, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 11.054, "planarity": 0.165, "simple_Shear": 0.227, "simple_Stretch": -0.194, "simple_Buckle": 6.614, "simple_Propeller": 8.856, "bp_simpleParams": [ 0.227, -0.194, -0.003, 6.614, 8.856, 0.153 ], "bp_params": [ 0.223, -0.199, -0.003, 6.785, 8.726, 0.153 ], "frame": { "rmsd": null, "origin": [ 190.212, 203.353, 266.791 ], "x_axis": [ 0.608, -0.149, 0.780 ], "y_axis": [ 0.632, -0.502, -0.590 ], "z_axis": [ 0.480, 0.852, -0.211 ], "quaternion": [ -0.473, 0.762, 0.159, 0.413 ] } }, { "index": 722, "nt1": "///A/1515", "nt2": "///A/1569", "bp": "C-A", "name": "~rHoogsteen", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": 12.451, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 33.345, "chi2": -135.647, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 11.291, "C1C1_dist": 10.930, "N1N9_dist": 8.327, "C6C8_dist": 7.539, "CNNC_torsion": -150.872, "hbonds_num": 2, "hbonds_desc": "OP2-N6(amino)[2.81],O2(carbonyl)-N6(amino)[3.07]", "interBase_angle": 14.095, "planarity": 0.202, "simple_Shear": 4.383, "simple_Stretch": 1.480, "simple_Buckle": 8.417, "simple_Propeller": 11.305, "bp_simpleParams": [ 4.383, 1.480, 0.053, 8.417, 11.305, -81.966 ], "bp_params": [ 4.401, -1.423, 0.053, 13.493, 4.075, -81.608 ], "frame": { "rmsd": null, "origin": [ 192.025, 206.726, 263.200 ], "x_axis": [ -0.479, 0.681, -0.554 ], "y_axis": [ 0.358, -0.425, -0.832 ], "z_axis": [ -0.802, -0.596, -0.040 ], "quaternion": [ 0.118, -0.497, -0.523, 0.683 ] } }, { "index": 723, "nt1": "///A/1516", "nt2": "///A/1568", "bp": "A+G", "name": "--", "Saenger": "--", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": 169.014, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 1.820, "chi2": 46.509, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 71.026, "C1C1_dist": 9.184, "N1N9_dist": 7.357, "C6C8_dist": 5.201, "CNNC_torsion": -174.841, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.18]", "interBase_angle": 16.007, "planarity": 0.270, "simple_Shear": -8.199, "simple_Stretch": 5.199, "simple_Buckle": -15.950, "simple_Propeller": 1.348, "bp_simpleParams": [ -8.199, 5.199, -0.388, -15.950, 1.348, -114.207 ], "bp_params": [ -8.230, 5.151, -0.388, -15.958, 1.246, -113.700 ], "frame": { "rmsd": null, "origin": [ 192.902, 210.800, 262.356 ], "x_axis": [ 0.488, -0.873, 0.017 ], "y_axis": [ 0.086, 0.028, -0.996 ], "z_axis": [ 0.869, 0.487, 0.088 ], "quaternion": [ 0.633, -0.585, 0.336, -0.378 ] } }, { "index": 724, "nt1": "///A/1517", "nt2": "///A/1567", "bp": "A-U", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 166.475, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 29.548, "chi2": -157.922, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 63.291, "C1C1_dist": 11.104, "N1N9_dist": 9.177, "C6C8_dist": 9.692, "CNNC_torsion": -6.381, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.39],N6(amino)*N3(imino)[2.86]", "unusual_base2base_hbonds": 1, "interBase_angle": 13.091, "planarity": 0.181, "simple_Shear": -2.813, "simple_Stretch": 0.243, "simple_Buckle": -8.324, "simple_Propeller": -10.104, "bp_simpleParams": [ -2.813, 0.243, -0.854, -8.324, -10.104, -15.610 ], "bp_params": [ -2.768, -0.556, -0.854, -5.150, -12.035, -15.680 ], "frame": { "rmsd": null, "origin": [ 195.754, 213.262, 261.768 ], "x_axis": [ 0.246, -0.965, -0.088 ], "y_axis": [ -0.104, 0.064, -0.992 ], "z_axis": [ 0.964, 0.253, -0.085 ], "quaternion": [ 0.553, -0.563, 0.475, -0.389 ] } }, { "index": 725, "nt1": "///A/1519", "nt2": "///A/1566", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -139.764, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 68.131, "chi2": -89.502, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 67.043, "C1C1_dist": 8.353, "N1N9_dist": 7.268, "C6C8_dist": 8.711, "CNNC_torsion": -36.238, "hbonds_num": 1, "hbonds_desc": "N3-N1(imino)[2.49]", "interBase_angle": 59.934, "planarity": 0.874, "simple_Shear": -0.611, "simple_Stretch": -0.309, "simple_Buckle": -37.155, "simple_Propeller": -47.027, "bp_simpleParams": [ -0.611, -0.309, 0.044, -37.155, -47.027, 38.797 ], "bp_params": [ -0.608, -0.315, 0.044, -36.180, -47.782, 40.481 ], "frame": { "rmsd": null, "origin": [ 201.757, 214.093, 262.387 ], "x_axis": [ -0.202, -0.513, -0.834 ], "y_axis": [ 0.363, 0.752, -0.550 ], "z_axis": [ 0.910, -0.414, 0.035 ], "quaternion": [ 0.629, -0.054, 0.693, -0.348 ] } }, { "index": 726, "nt1": "///A/1520", "nt2": "///A/1564", "bp": "A-C", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 174.365, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 38.636, "chi2": -164.684, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.490, "C1C1_dist": 10.674, "N1N9_dist": 8.672, "C6C8_dist": 9.289, "CNNC_torsion": -5.298, "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[2.41],N1*O2(carbonyl)[2.87]", "unusual_base2base_hbonds": 1, "interBase_angle": 9.197, "planarity": 0.100, "simple_Shear": -1.787, "simple_Stretch": -0.419, "simple_Buckle": -7.911, "simple_Propeller": -4.691, "bp_simpleParams": [ -1.787, -0.419, -0.217, -7.911, -4.691, -12.327 ], "bp_params": [ -1.684, -0.728, -0.217, -6.960, -6.012, -12.321 ], "frame": { "rmsd": null, "origin": [ 206.304, 213.209, 260.066 ], "x_axis": [ -0.497, 0.031, -0.867 ], "y_axis": [ -0.220, 0.962, 0.161 ], "z_axis": [ 0.839, 0.271, -0.471 ], "quaternion": [ 0.498, -0.055, 0.856, 0.126 ] } }, { "index": 727, "nt1": "///A/1520", "nt2": "///A/1565", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 174.365, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 67.813, "chi2": -167.028, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.299, "C1C1_dist": 8.354, "N1N9_dist": 6.935, "C6C8_dist": 7.933, "CNNC_torsion": -26.368, "hbonds_num": 0, "hbonds_desc": "", "interBase_angle": 7.215, "planarity": 0.800, "simple_Shear": 1.379, "simple_Stretch": -2.436, "simple_Buckle": -4.337, "simple_Propeller": 5.766, "bp_simpleParams": [ 1.379, -2.436, 2.911, -4.337, 5.766, 9.672 ], "bp_params": [ 1.012, -2.609, 2.911, -3.457, 6.333, 9.683 ], "frame": { "rmsd": null, "origin": [ 205.180, 213.650, 261.794 ], "x_axis": [ -0.345, -0.116, -0.931 ], "y_axis": [ -0.327, 0.945, 0.003 ], "z_axis": [ 0.880, 0.306, -0.364 ], "quaternion": [ 0.556, -0.136, 0.815, 0.095 ] } }, { "index": 728, "nt1": "///A/1521", "nt2": "///A/1563", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 165.111, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.739, "chi2": 174.236, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 38.189, "C1C1_dist": 12.608, "N1N9_dist": 10.522, "C6C8_dist": 10.876, "CNNC_torsion": 4.164, "hbonds_num": 2, "hbonds_desc": "N1(imino)-O6(carbonyl)[2.65],N2(amino)*N1(imino)[2.73]", "unusual_base2base_hbonds": 1, "interBase_angle": 6.188, "planarity": 0.111, "simple_Shear": 1.236, "simple_Stretch": 1.220, "simple_Buckle": -5.868, "simple_Propeller": -1.966, "bp_simpleParams": [ 1.236, 1.220, -0.262, -5.868, -1.966, -20.244 ], "bp_params": [ 1.381, 1.054, -0.262, -6.070, -1.204, -20.218 ], "frame": { "rmsd": null, "origin": [ 208.620, 212.728, 257.390 ], "x_axis": [ -0.517, 0.708, -0.481 ], "y_axis": [ 0.249, 0.662, 0.707 ], "z_axis": [ 0.819, 0.246, -0.519 ], "quaternion": [ 0.396, 0.291, 0.821, 0.290 ] } }, { "index": 729, "nt1": "///A/1522", "nt2": "///A/1562", "bp": "U+A", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -169.202, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 71.996, "chi2": 4.796, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 38.804, "C1C1_dist": 10.260, "N1N9_dist": 8.961, "C6C8_dist": 10.706, "CNNC_torsion": 178.015, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)*N1[2.84]", "interBase_angle": 8.991, "planarity": 0.109, "simple_Shear": 4.526, "simple_Stretch": 2.319, "simple_Buckle": -8.601, "simple_Propeller": -2.618, "bp_simpleParams": [ 4.526, 2.319, 0.536, -8.601, -2.618, -148.388 ], "bp_params": [ -0.088, -5.085, 0.536, 1.749, 8.819, -148.474 ], "frame": { "rmsd": null, "origin": [ 210.995, 211.974, 253.932 ], "x_axis": [ 0.361, 0.364, 0.858 ], "y_axis": [ 0.426, -0.883, 0.196 ], "z_axis": [ 0.830, 0.295, -0.474 ], "quaternion": [ -0.030, 0.824, 0.240, 0.512 ] } }, { "index": 730, "nt1": "///A/1524", "nt2": "///A/1560", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.604, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.324, "chi2": 171.375, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.086, "C1C1_dist": 10.672, "N1N9_dist": 8.827, "C6C8_dist": 9.743, "CNNC_torsion": 1.155, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.90],N1-N3(imino)[2.81]", "interBase_angle": 3.520, "planarity": 0.041, "simple_Shear": -0.168, "simple_Stretch": -0.187, "simple_Buckle": 2.203, "simple_Propeller": 2.746, "bp_simpleParams": [ -0.168, -0.187, 0.145, 2.203, 2.746, -0.501 ], "bp_params": [ -0.166, -0.189, 0.145, 2.172, 2.770, -0.501 ], "frame": { "rmsd": null, "origin": [ 214.912, 216.840, 250.376 ], "x_axis": [ 0.182, 0.522, 0.833 ], "y_axis": [ 0.520, -0.771, 0.369 ], "z_axis": [ 0.835, 0.366, -0.412 ], "quaternion": [ 0.001, 0.769, 0.339, 0.542 ] } }, { "index": 731, "nt1": "///A/1525", "nt2": "///A/1559", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.259, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.227, "chi2": -165.473, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.368, "C1C1_dist": 10.556, "N1N9_dist": 8.879, "C6C8_dist": 9.861, "CNNC_torsion": 4.574, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.86],N2(amino)-O2(carbonyl)[2.71]", "interBase_angle": 3.326, "planarity": 0.076, "simple_Shear": -0.187, "simple_Stretch": -0.169, "simple_Buckle": 0.265, "simple_Propeller": 3.316, "bp_simpleParams": [ -0.187, -0.169, -0.302, 0.265, 3.316, 1.395 ], "bp_params": [ -0.184, -0.172, -0.302, 0.217, 3.319, 1.395 ], "frame": { "rmsd": null, "origin": [ 216.870, 219.536, 248.566 ], "x_axis": [ 0.341, 0.120, 0.932 ], "y_axis": [ 0.388, -0.921, -0.023 ], "z_axis": [ 0.856, 0.370, -0.361 ], "quaternion": [ -0.121, 0.810, 0.157, 0.552 ] } }, { "index": 732, "nt1": "///A/1526", "nt2": "///A/1558", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.852, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.863, "chi2": -170.934, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.387, "C1C1_dist": 10.639, "N1N9_dist": 8.889, "C6C8_dist": 9.841, "CNNC_torsion": 1.799, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.85],N2(amino)-O2(carbonyl)[2.71]", "interBase_angle": 1.177, "planarity": 0.068, "simple_Shear": -0.167, "simple_Stretch": -0.186, "simple_Buckle": 0.762, "simple_Propeller": 0.897, "bp_simpleParams": [ -0.167, -0.186, -0.285, 0.762, 0.897, 0.583 ], "bp_params": [ -0.165, -0.188, -0.285, 0.751, 0.906, 0.583 ], "frame": { "rmsd": null, "origin": [ 219.039, 222.220, 248.001 ], "x_axis": [ 0.412, -0.399, 0.819 ], "y_axis": [ 0.163, -0.852, -0.497 ], "z_axis": [ 0.896, 0.339, -0.287 ], "quaternion": [ -0.262, 0.799, -0.074, 0.537 ] } }, { "index": 733, "nt1": "///A/1527", "nt2": "///A/1557", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.117, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.739, "chi2": -175.402, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.623, "C1C1_dist": 10.711, "N1N9_dist": 8.944, "C6C8_dist": 9.872, "CNNC_torsion": 2.209, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.80],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 3.415, "planarity": 0.043, "simple_Shear": 0.192, "simple_Stretch": -0.155, "simple_Buckle": 0.341, "simple_Propeller": 3.398, "bp_simpleParams": [ 0.192, -0.155, -0.005, 0.341, 3.398, -0.679 ], "bp_params": [ 0.190, -0.158, -0.005, 0.391, 3.392, -0.679 ], "frame": { "rmsd": null, "origin": [ 221.961, 224.653, 248.512 ], "x_axis": [ 0.398, -0.810, 0.432 ], "y_axis": [ -0.071, -0.496, -0.865 ], "z_axis": [ 0.915, 0.313, -0.255 ], "quaternion": [ -0.402, 0.733, -0.300, 0.459 ] } }, { "index": 734, "nt1": "///A/1529", "nt2": "///A/1552", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -128.182, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.522, "chi2": -150.291, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.499, "C1C1_dist": 10.167, "N1N9_dist": 8.610, "C6C8_dist": 9.572, "CNNC_torsion": 11.807, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.85],N1(imino)-N3[2.82],N2(amino)-O2(carbonyl)[2.63]", "interBase_angle": 14.799, "planarity": 0.269, "simple_Shear": -0.113, "simple_Stretch": -0.467, "simple_Buckle": -14.799, "simple_Propeller": 0.041, "bp_simpleParams": [ -0.113, -0.467, -1.442, -14.799, 0.041, 1.074 ], "bp_params": [ -0.109, -0.468, -1.442, -14.799, -0.067, 1.065 ], "frame": { "rmsd": null, "origin": [ 231.538, 233.712, 245.085 ], "x_axis": [ 0.495, 0.097, -0.864 ], "y_axis": [ -0.724, -0.504, -0.471 ], "z_axis": [ -0.481, 0.858, -0.179 ], "quaternion": [ -0.451, 0.738, -0.212, -0.456 ] } }, { "index": 735, "nt1": "///A/1530", "nt2": "///A/1551", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.022, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.697, "chi2": -155.502, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.464, "C1C1_dist": 10.669, "N1N9_dist": 8.817, "C6C8_dist": 9.668, "CNNC_torsion": 9.907, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.83],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 2.339, "planarity": 0.243, "simple_Shear": -0.177, "simple_Stretch": -0.402, "simple_Buckle": -1.334, "simple_Propeller": 1.922, "bp_simpleParams": [ -0.177, -0.402, -1.127, -1.334, 1.922, -2.797 ], "bp_params": [ -0.172, -0.404, -1.127, -1.359, 1.904, -2.797 ], "frame": { "rmsd": null, "origin": [ 230.525, 236.444, 244.527 ], "x_axis": [ 0.210, -0.218, -0.953 ], "y_axis": [ -0.834, -0.549, -0.058 ], "z_axis": [ -0.510, 0.807, -0.297 ], "quaternion": [ -0.302, 0.717, -0.367, -0.510 ] } }, { "index": 736, "nt1": "///A/1530", "nt2": "///A/1552", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.022, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.612, "chi2": -150.291, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 67.640, "C1C1_dist": 8.932, "N1N9_dist": 7.717, "C6C8_dist": 9.049, "CNNC_torsion": -7.341, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.17],N1(imino)-N3[2.71]", "interBase_angle": 15.263, "planarity": 0.594, "simple_Shear": -0.106, "simple_Stretch": -0.879, "simple_Buckle": -12.950, "simple_Propeller": 8.079, "bp_simpleParams": [ -0.106, -0.879, 1.684, -12.950, 8.079, 23.283 ], "bp_params": [ -0.100, -0.880, 1.684, -13.016, 7.972, 23.192 ], "frame": { "rmsd": null, "origin": [ 231.006, 235.169, 244.793 ], "x_axis": [ 0.365, -0.042, -0.930 ], "y_axis": [ -0.813, -0.501, -0.297 ], "z_axis": [ -0.454, 0.864, -0.217 ], "quaternion": [ -0.402, 0.722, -0.296, -0.479 ] } }, { "index": 737, "nt1": "///A/1531", "nt2": "///A/1550", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.811, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.796, "chi2": -172.292, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.607, "C1C1_dist": 10.620, "N1N9_dist": 8.895, "C6C8_dist": 9.843, "CNNC_torsion": 5.245, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.72]", "interBase_angle": 8.845, "planarity": 0.110, "simple_Shear": -0.110, "simple_Stretch": -0.156, "simple_Buckle": -8.198, "simple_Propeller": 3.321, "bp_simpleParams": [ -0.110, -0.156, -0.345, -8.198, 3.321, 0.466 ], "bp_params": [ -0.109, -0.157, -0.345, -8.226, 3.253, 0.465 ], "frame": { "rmsd": null, "origin": [ 230.211, 239.611, 242.402 ], "x_axis": [ -0.234, -0.595, -0.769 ], "y_axis": [ -0.776, -0.362, 0.516 ], "z_axis": [ -0.585, 0.718, -0.377 ], "quaternion": [ -0.082, 0.613, -0.559, -0.552 ] } }, { "index": 738, "nt1": "///A/1532", "nt2": "///A/1549", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 172.818, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.159, "chi2": -168.592, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.654, "C1C1_dist": 10.759, "N1N9_dist": 8.901, "C6C8_dist": 9.764, "CNNC_torsion": 11.663, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.89],N1-N3(imino)[2.82]", "interBase_angle": 11.845, "planarity": 0.163, "simple_Shear": 0.093, "simple_Stretch": -0.173, "simple_Buckle": -0.817, "simple_Propeller": 11.816, "bp_simpleParams": [ 0.093, -0.173, -0.337, -0.817, 11.816, -3.586 ], "bp_params": [ 0.091, -0.174, -0.337, -0.648, 11.827, -3.605 ], "frame": { "rmsd": null, "origin": [ 229.325, 241.555, 239.801 ], "x_axis": [ -0.549, -0.783, -0.291 ], "y_axis": [ -0.553, 0.080, 0.829 ], "z_axis": [ -0.626, 0.616, -0.477 ], "quaternion": [ -0.116, -0.460, 0.726, 0.498 ] } }, { "index": 739, "nt1": "///A/1533", "nt2": "///A/1548", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.632, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.516, "chi2": -160.095, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.103, "C1C1_dist": 10.581, "N1N9_dist": 8.880, "C6C8_dist": 9.804, "CNNC_torsion": 6.377, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.93],N1-N3(imino)[2.86]", "interBase_angle": 5.112, "planarity": 0.133, "simple_Shear": 0.102, "simple_Stretch": -0.157, "simple_Buckle": -5.091, "simple_Propeller": -0.461, "bp_simpleParams": [ 0.102, -0.157, -0.719, -5.091, -0.461, -1.054 ], "bp_params": [ 0.099, -0.159, -0.719, -5.098, -0.384, -1.053 ], "frame": { "rmsd": null, "origin": [ 227.744, 242.673, 236.723 ], "x_axis": [ -0.618, -0.702, 0.355 ], "y_axis": [ -0.226, 0.591, 0.774 ], "z_axis": [ -0.753, 0.398, -0.524 ], "quaternion": [ -0.335, -0.281, 0.827, 0.355 ] } }, { "index": 740, "nt1": "///A/1534", "nt2": "///A/1547", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 169.082, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.381, "chi2": -166.847, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.366, "C1C1_dist": 10.498, "N1N9_dist": 8.779, "C6C8_dist": 9.755, "CNNC_torsion": 3.414, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.94],N1-N3(imino)[2.79]", "interBase_angle": 4.243, "planarity": 0.107, "simple_Shear": 0.028, "simple_Stretch": -0.181, "simple_Buckle": 3.986, "simple_Propeller": 1.454, "bp_simpleParams": [ 0.028, -0.181, -0.330, 3.986, 1.454, 1.419 ], "bp_params": [ 0.027, -0.181, -0.330, 3.998, 1.421, 1.418 ], "frame": { "rmsd": null, "origin": [ 225.350, 242.723, 234.389 ], "x_axis": [ -0.647, -0.331, 0.687 ], "y_axis": [ 0.161, 0.821, 0.547 ], "z_axis": [ -0.745, 0.465, -0.479 ], "quaternion": [ -0.417, -0.050, 0.858, 0.295 ] } }, { "index": 741, "nt1": "///A/1537", "nt2": "///A/1545", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.340, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.283, "chi2": 172.166, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.079, "C1C1_dist": 10.620, "N1N9_dist": 8.871, "C6C8_dist": 9.827, "CNNC_torsion": -5.733, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.68]", "interBase_angle": 6.502, "planarity": 0.129, "simple_Shear": -0.133, "simple_Stretch": -0.198, "simple_Buckle": 6.098, "simple_Propeller": 2.254, "bp_simpleParams": [ -0.133, -0.198, 0.670, 6.098, 2.254, 1.754 ], "bp_params": [ -0.132, -0.199, 0.670, 6.079, 2.304, 1.752 ], "frame": { "rmsd": null, "origin": [ 218.631, 242.200, 229.769 ], "x_axis": [ 0.224, 0.792, 0.569 ], "y_axis": [ 0.458, 0.429, -0.778 ], "z_axis": [ -0.860, 0.435, -0.266 ], "quaternion": [ 0.589, -0.515, -0.607, 0.142 ] } }, { "index": 742, "nt1": "///A/1538", "nt2": "///A/1544", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.016, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.830, "chi2": -175.174, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.064, "C1C1_dist": 10.680, "N1N9_dist": 8.923, "C6C8_dist": 9.862, "CNNC_torsion": -5.084, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 5.072, "planarity": 0.069, "simple_Shear": -0.138, "simple_Stretch": -0.148, "simple_Buckle": 4.940, "simple_Propeller": -1.150, "bp_simpleParams": [ -0.138, -0.148, 0.297, 4.940, -1.150, 0.115 ], "bp_params": [ -0.136, -0.150, 0.297, 4.951, -1.100, 0.115 ], "frame": { "rmsd": null, "origin": [ 215.115, 242.987, 231.033 ], "x_axis": [ 0.452, 0.889, 0.075 ], "y_axis": [ 0.244, -0.042, -0.969 ], "z_axis": [ -0.858, 0.456, -0.235 ], "quaternion": [ 0.542, -0.657, -0.431, 0.298 ] } }, { "index": 743, "nt1": "///A/1573", "nt2": "///A/1594", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -146.367, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.924, "chi2": -162.364, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.705, "C1C1_dist": 10.390, "N1N9_dist": 8.774, "C6C8_dist": 9.745, "CNNC_torsion": 3.891, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.70],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 3.514, "planarity": 0.200, "simple_Shear": 0.200, "simple_Stretch": -0.289, "simple_Buckle": 0.313, "simple_Propeller": -3.500, "bp_simpleParams": [ 0.200, -0.289, -0.849, 0.313, -3.500, 2.760 ], "bp_params": [ 0.195, -0.292, -0.849, 0.261, -3.504, 2.761 ], "frame": { "rmsd": null, "origin": [ 189.144, 196.729, 268.789 ], "x_axis": [ -0.392, 0.445, 0.805 ], "y_axis": [ -0.807, 0.254, -0.534 ], "z_axis": [ -0.442, -0.859, 0.260 ], "quaternion": [ 0.529, 0.153, -0.589, 0.591 ] } }, { "index": 744, "nt1": "///A/1574", "nt2": "///A/1593", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -150.439, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 92.826, "chi2": -166.232, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 10.612, "C1C1_dist": 9.991, "N1N9_dist": 8.701, "C6C8_dist": 9.155, "CNNC_torsion": 5.219, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.89],N3-N6(amino)[2.84]", "interBase_angle": 7.213, "planarity": 0.171, "simple_Shear": 7.147, "simple_Stretch": 2.406, "simple_Buckle": 6.793, "simple_Propeller": -2.424, "bp_simpleParams": [ 7.147, 2.406, -0.631, 6.793, -2.424, -4.126 ], "bp_params": [ 6.653, -3.550, -0.631, 2.898, -6.605, -4.131 ], "frame": { "rmsd": null, "origin": [ 187.597, 192.952, 269.113 ], "x_axis": [ -0.866, 0.499, -0.044 ], "y_axis": [ -0.103, -0.263, -0.959 ], "z_axis": [ -0.490, -0.826, 0.279 ], "quaternion": [ 0.194, -0.172, -0.575, 0.776 ] } }, { "index": 745, "nt1": "///A/1575", "nt2": "///A/1591", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -149.143, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 4.572, "chi2": -163.766, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 92.265, "C1C1_dist": 9.672, "N1N9_dist": 8.392, "C6C8_dist": 8.667, "CNNC_torsion": -150.767, "hbonds_num": 4, "hbonds_desc": "OP2-N2(amino)[3.27],N7-N2(amino)[2.78],N6(amino)-O2'(hydroxyl)[2.82],N6(amino)-N3[3.23]", "interBase_angle": 16.222, "planarity": 0.248, "simple_Shear": -7.664, "simple_Stretch": 2.663, "simple_Buckle": -16.159, "simple_Propeller": -1.428, "bp_simpleParams": [ -7.664, 2.663, -0.402, -16.159, -1.428, -13.279 ], "bp_params": [ -6.839, -4.364, -0.402, -8.901, -13.562, -13.333 ], "frame": { "rmsd": null, "origin": [ 182.318, 190.153, 269.425 ], "x_axis": [ -0.529, 0.811, -0.250 ], "y_axis": [ 0.141, -0.207, -0.968 ], "z_axis": [ -0.837, -0.547, -0.004 ], "quaternion": [ 0.255, -0.413, -0.576, 0.658 ] } }, { "index": 746, "nt1": "///A/1576", "nt2": "///A/1590", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -154.644, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.677, "chi2": -158.495, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.584, "C1C1_dist": 10.538, "N1N9_dist": 8.872, "C6C8_dist": 9.838, "CNNC_torsion": 5.129, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 6.183, "planarity": 0.164, "simple_Shear": -0.171, "simple_Stretch": -0.211, "simple_Buckle": -6.099, "simple_Propeller": -1.016, "bp_simpleParams": [ -0.171, -0.211, -0.882, -6.099, -1.016, 1.484 ], "bp_params": [ -0.168, -0.214, -0.882, -6.086, -1.092, 1.482 ], "frame": { "rmsd": null, "origin": [ 178.239, 189.161, 268.657 ], "x_axis": [ -0.159, 0.364, -0.918 ], "y_axis": [ 0.465, -0.793, -0.395 ], "z_axis": [ -0.871, -0.489, -0.043 ], "quaternion": [ -0.036, -0.648, -0.320, 0.691 ] } }, { "index": 747, "nt1": "///A/1577", "nt2": "///A/1589", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.735, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.239, "chi2": -160.680, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.018, "C1C1_dist": 10.611, "N1N9_dist": 8.881, "C6C8_dist": 9.851, "CNNC_torsion": 2.620, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.70],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 1.691, "planarity": 0.109, "simple_Shear": 0.170, "simple_Stretch": -0.181, "simple_Buckle": 1.674, "simple_Propeller": 0.241, "bp_simpleParams": [ 0.170, -0.181, -0.545, 1.674, 0.241, 1.636 ], "bp_params": [ 0.167, -0.184, -0.545, 1.677, 0.219, 1.636 ], "frame": { "rmsd": null, "origin": [ 174.899, 188.918, 268.572 ], "x_axis": [ 0.146, -0.052, -0.988 ], "y_axis": [ 0.504, -0.855, 0.120 ], "z_axis": [ -0.851, -0.516, -0.099 ], "quaternion": [ 0.219, 0.725, 0.156, -0.634 ] } }, { "index": 748, "nt1": "///A/1578", "nt2": "///A/1588", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": 173.839, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 79.370, "chi2": 163.210, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 7.326, "C1C1_dist": 10.442, "N1N9_dist": 8.859, "C6C8_dist": 8.860, "CNNC_torsion": 177.631, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N7[2.38]", "interBase_angle": 7.920, "planarity": 0.096, "simple_Shear": 7.528, "simple_Stretch": 3.227, "simple_Buckle": 2.954, "simple_Propeller": -7.348, "bp_simpleParams": [ 7.528, 3.227, -0.073, 2.954, -7.348, -33.353 ], "bp_params": [ 7.083, -4.113, -0.073, -4.135, -6.755, -33.387 ], "frame": { "rmsd": null, "origin": [ 170.924, 188.700, 267.820 ], "x_axis": [ 0.577, -0.758, -0.303 ], "y_axis": [ -0.029, -0.389, 0.921 ], "z_axis": [ -0.816, -0.523, -0.247 ], "quaternion": [ 0.485, 0.744, -0.265, -0.376 ] } }, { "index": 749, "nt1": "///A/1582", "nt2": "///A/1586", "bp": "U-G", "name": "~Sheared", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -79.295, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 14.021, "chi2": -111.552, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 84.469, "C1C1_dist": 10.915, "N1N9_dist": 9.476, "C6C8_dist": 9.894, "CNNC_torsion": 120.625, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N2(amino)[2.56]", "interBase_angle": 26.581, "planarity": 0.427, "simple_Shear": -7.066, "simple_Stretch": 2.891, "simple_Buckle": 17.607, "simple_Propeller": 19.913, "bp_simpleParams": [ -7.066, 2.891, -1.630, 17.607, 19.913, -22.779 ], "bp_params": [ -6.964, -3.128, -1.630, -2.326, 26.479, -23.380 ], "frame": { "rmsd": null, "origin": [ 163.683, 186.177, 262.822 ], "x_axis": [ 0.605, -0.467, 0.645 ], "y_axis": [ -0.764, -0.112, 0.635 ], "z_axis": [ -0.224, -0.877, -0.425 ], "quaternion": [ 0.517, 0.732, -0.421, 0.144 ] } }, { "index": 750, "nt1": "///A/1602", "nt2": "///A/1679", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -137.641, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 32.844, "chi2": -151.345, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 17.005, "C1C1_dist": 9.805, "N1N9_dist": 7.270, "C6C8_dist": 6.265, "CNNC_torsion": -161.440, "hbonds_num": 1, "hbonds_desc": "N3(imino)-N7[3.04]", "interBase_angle": 45.119, "planarity": 0.510, "simple_Shear": 4.342, "simple_Stretch": 0.803, "simple_Buckle": -25.061, "simple_Propeller": 37.519, "bp_simpleParams": [ 4.342, 0.803, 3.019, -25.061, 37.519, -86.459 ], "bp_params": [ 3.855, -2.154, 3.019, 5.109, 44.829, -90.900 ], "frame": { "rmsd": null, "origin": [ 203.363, 189.228, 236.166 ], "x_axis": [ 0.672, -0.057, 0.738 ], "y_axis": [ 0.244, 0.958, -0.149 ], "z_axis": [ -0.699, 0.280, 0.658 ], "quaternion": [ 0.907, -0.118, -0.396, -0.083 ] } }, { "index": 751, "nt1": "///A/1613", "nt2": "///A/1616", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -132.364, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 58.037, "chi2": -82.539, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 55.854, "C1C1_dist": 10.455, "N1N9_dist": 8.852, "C6C8_dist": 9.850, "CNNC_torsion": -4.175, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.99]", "interBase_angle": 2.998, "planarity": 0.203, "simple_Shear": 0.203, "simple_Stretch": -0.204, "simple_Buckle": 1.438, "simple_Propeller": 2.630, "bp_simpleParams": [ 0.203, -0.204, 0.815, 1.438, 2.630, 3.019 ], "bp_params": [ 0.199, -0.207, 0.815, 1.479, 2.607, 3.019 ], "frame": { "rmsd": null, "origin": [ 220.276, 210.971, 223.659 ], "x_axis": [ 0.426, 0.449, 0.785 ], "y_axis": [ 0.840, -0.519, -0.159 ], "z_axis": [ 0.337, 0.727, -0.599 ], "quaternion": [ -0.278, 0.798, 0.404, 0.352 ] } }, { "index": 752, "nt1": "///A/1653", "nt2": "///A/1666", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -80.548, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 19.183, "chi2": -159.586, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 29.817, "C1C1_dist": 10.130, "N1N9_dist": 7.563, "C6C8_dist": 6.558, "CNNC_torsion": -169.315, "hbonds_num": 2, "hbonds_desc": "N7-N3(imino)[3.11],N6(amino)-O2(carbonyl)[3.04]", "interBase_angle": 8.577, "planarity": 0.126, "simple_Shear": -4.097, "simple_Stretch": 1.391, "simple_Buckle": -0.463, "simple_Propeller": 8.565, "bp_simpleParams": [ -4.097, 1.391, 0.545, -0.463, 8.565, -96.727 ], "bp_params": [ -4.051, -1.521, 0.545, -5.786, 6.332, -96.742 ], "frame": { "rmsd": null, "origin": [ 182.133, 190.349, 225.694 ], "x_axis": [ 0.670, -0.650, -0.359 ], "y_axis": [ -0.477, -0.747, 0.463 ], "z_axis": [ -0.569, -0.139, -0.810 ], "quaternion": [ 0.168, 0.898, -0.313, -0.258 ] } }, { "index": 753, "nt1": "///A/1656", "nt2": "///A/1665", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -134.650, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 54.477, "chi2": -167.015, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.036, "C1C1_dist": 10.653, "N1N9_dist": 8.902, "C6C8_dist": 9.821, "CNNC_torsion": 16.821, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 19.444, "planarity": 0.278, "simple_Shear": 0.127, "simple_Stretch": -0.107, "simple_Buckle": 14.193, "simple_Propeller": 13.291, "bp_simpleParams": [ 0.127, -0.107, -0.271, 14.193, 13.291, 0.188 ], "bp_params": [ 0.126, -0.109, -0.271, 14.402, 13.064, 0.188 ], "frame": { "rmsd": null, "origin": [ 182.685, 188.128, 222.139 ], "x_axis": [ -0.301, -0.778, 0.551 ], "y_axis": [ -0.785, 0.530, 0.320 ], "z_axis": [ -0.541, -0.336, -0.771 ], "quaternion": [ -0.339, -0.485, 0.807, -0.005 ] } }, { "index": 754, "nt1": "///A/1657", "nt2": "///A/1664", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -143.389, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.229, "chi2": 176.446, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.381, "C1C1_dist": 10.675, "N1N9_dist": 8.873, "C6C8_dist": 9.759, "CNNC_torsion": 7.446, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.85],N4(amino)-O6(carbonyl)[2.87]", "interBase_angle": 11.016, "planarity": 0.150, "simple_Shear": 0.143, "simple_Stretch": -0.207, "simple_Buckle": 7.699, "simple_Propeller": 7.879, "bp_simpleParams": [ 0.143, -0.207, -0.216, 7.699, 7.879, -0.689 ], "bp_params": [ 0.141, -0.209, -0.216, 7.788, 7.791, -0.689 ], "frame": { "rmsd": null, "origin": [ 182.224, 185.580, 219.113 ], "x_axis": [ -0.664, -0.293, 0.688 ], "y_axis": [ -0.446, 0.894, -0.049 ], "z_axis": [ -0.601, -0.340, -0.724 ], "quaternion": [ -0.356, -0.204, 0.906, -0.107 ] } }, { "index": 755, "nt1": "///A/1672", "nt2": "///A/1684", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.436, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.106, "chi2": -164.362, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.469, "C1C1_dist": 10.838, "N1N9_dist": 8.939, "C6C8_dist": 9.681, "CNNC_torsion": 10.468, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.85],N1-N3(imino)[2.98]", "interBase_angle": 14.308, "planarity": 0.262, "simple_Shear": 0.106, "simple_Stretch": -0.260, "simple_Buckle": -13.265, "simple_Propeller": -5.362, "bp_simpleParams": [ 0.106, -0.260, -1.413, -13.265, -5.362, -6.982 ], "bp_params": [ 0.102, -0.262, -1.413, -13.367, -5.105, -6.941 ], "frame": { "rmsd": null, "origin": [ 196.520, 179.136, 245.491 ], "x_axis": [ -0.080, 0.062, -0.995 ], "y_axis": [ 0.402, 0.915, 0.025 ], "z_axis": [ 0.912, -0.398, -0.098 ], "quaternion": [ 0.659, 0.160, 0.723, -0.129 ] } }, { "index": 756, "nt1": "///A/1673", "nt2": "///A/1683", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.768, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.742, "chi2": -154.531, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.345, "C1C1_dist": 10.774, "N1N9_dist": 8.980, "C6C8_dist": 9.863, "CNNC_torsion": 4.745, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.94],N2(amino)-O2(carbonyl)[2.86]", "interBase_angle": 13.589, "planarity": 0.200, "simple_Shear": -0.140, "simple_Stretch": -0.091, "simple_Buckle": -12.018, "simple_Propeller": 6.344, "bp_simpleParams": [ -0.140, -0.091, -0.062, -12.018, 6.344, -1.045 ], "bp_params": [ -0.139, -0.092, -0.062, -12.099, 6.187, -1.040 ], "frame": { "rmsd": null, "origin": [ 198.905, 176.019, 245.104 ], "x_axis": [ -0.129, 0.514, -0.848 ], "y_axis": [ 0.218, 0.849, 0.482 ], "z_axis": [ 0.967, -0.123, -0.221 ], "quaternion": [ 0.612, 0.247, 0.741, 0.121 ] } }, { "index": 757, "nt1": "///A/1674", "nt2": "///A/1682", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.696, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.083, "chi2": -154.107, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.807, "C1C1_dist": 10.657, "N1N9_dist": 8.905, "C6C8_dist": 9.841, "CNNC_torsion": 12.742, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 19.591, "planarity": 0.266, "simple_Shear": -0.169, "simple_Stretch": -0.131, "simple_Buckle": -9.632, "simple_Propeller": 17.060, "bp_simpleParams": [ -0.169, -0.131, -0.206, -9.632, 17.060, 0.705 ], "bp_params": [ -0.167, -0.134, -0.206, -9.912, 16.899, 0.710 ], "frame": { "rmsd": null, "origin": [ 202.008, 174.307, 243.485 ], "x_axis": [ -0.126, 0.871, -0.475 ], "y_axis": [ 0.204, 0.491, 0.847 ], "z_axis": [ 0.971, 0.010, -0.240 ], "quaternion": [ 0.530, 0.395, 0.681, 0.314 ] } }, { "index": 758, "nt1": "///A/1675", "nt2": "///A/1681", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.723, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.710, "chi2": -161.851, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.511, "C1C1_dist": 10.908, "N1N9_dist": 9.060, "C6C8_dist": 9.883, "CNNC_torsion": 13.935, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.95],N1-N3(imino)[2.94]", "interBase_angle": 14.166, "planarity": 0.195, "simple_Shear": 0.253, "simple_Stretch": -0.049, "simple_Buckle": -0.839, "simple_Propeller": 14.141, "bp_simpleParams": [ 0.253, -0.049, -0.417, -0.839, 14.141, -5.706 ], "bp_params": [ 0.251, -0.057, -0.417, -0.424, 14.160, -5.750 ], "frame": { "rmsd": null, "origin": [ 204.973, 174.604, 241.749 ], "x_axis": [ -0.307, 0.939, 0.155 ], "y_axis": [ 0.342, -0.043, 0.939 ], "z_axis": [ 0.888, 0.341, -0.308 ], "quaternion": [ 0.292, 0.511, 0.627, 0.510 ] } }, { "index": 759, "nt1": "///A/1676", "nt2": "///A/1680", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -161.486, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 105.518, "chi2": 177.696, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 11.446, "C1C1_dist": 10.170, "N1N9_dist": 9.195, "C6C8_dist": 9.774, "CNNC_torsion": -55.294, "hbonds_num": 1, "hbonds_desc": "N3-N6(amino)[3.51]", "interBase_angle": 23.118, "planarity": 0.332, "simple_Shear": 7.370, "simple_Stretch": 3.538, "simple_Buckle": 4.934, "simple_Propeller": 22.585, "bp_simpleParams": [ 7.370, 3.538, 0.352, 4.934, 22.585, 8.390 ], "bp_params": [ 7.433, -3.403, 0.352, 20.490, 10.705, 8.294 ], "frame": { "rmsd": null, "origin": [ 207.174, 177.329, 241.228 ], "x_axis": [ 0.057, 0.439, 0.897 ], "y_axis": [ 0.484, -0.798, 0.359 ], "z_axis": [ 0.873, 0.414, -0.258 ], "quaternion": [ -0.019, 0.727, 0.317, 0.609 ] } }, { "index": 760, "nt1": "///A/1681", "nt2": "///A/1789", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -161.851, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 134.739, "chi2": -148.972, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 95.955, "C1C1_dist": 6.002, "N1N9_dist": 7.295, "C6C8_dist": 9.841, "CNNC_torsion": -43.865, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.59],O2'(hydroxyl)-N3[3.39]", "interBase_angle": 31.167, "planarity": 0.400, "simple_Shear": 0.754, "simple_Stretch": 6.421, "simple_Buckle": -14.487, "simple_Propeller": -27.595, "bp_simpleParams": [ 0.754, 6.421, 0.401, -14.487, -27.595, 139.197 ], "bp_params": [ 1.986, 6.153, 0.401, -19.424, -24.374, 139.490 ], "frame": { "rmsd": null, "origin": [ 206.248, 171.557, 241.047 ], "x_axis": [ 0.453, 0.309, 0.837 ], "y_axis": [ -0.434, 0.896, -0.096 ], "z_axis": [ -0.779, -0.320, 0.540 ], "quaternion": [ 0.850, 0.066, -0.475, 0.218 ] } }, { "index": 761, "nt1": "///A/1693", "nt2": "///A/2038", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.192, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.894, "chi2": -177.859, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.058, "C1C1_dist": 10.526, "N1N9_dist": 8.855, "C6C8_dist": 9.820, "CNNC_torsion": 2.041, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 9.892, "planarity": 0.229, "simple_Shear": 0.191, "simple_Stretch": -0.198, "simple_Buckle": 5.721, "simple_Propeller": 8.070, "bp_simpleParams": [ 0.191, -0.198, 0.563, 5.721, 8.070, 2.209 ], "bp_params": [ 0.187, -0.201, 0.563, 5.846, 7.980, 2.211 ], "frame": { "rmsd": null, "origin": [ 166.445, 160.058, 224.575 ], "x_axis": [ 0.627, -0.486, -0.609 ], "y_axis": [ 0.559, 0.825, -0.084 ], "z_axis": [ 0.543, -0.287, 0.789 ], "quaternion": [ 0.900, 0.056, 0.320, -0.290 ] } }, { "index": 762, "nt1": "///A/1694", "nt2": "///A/2037", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.480, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.760, "chi2": -161.267, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.166, "C1C1_dist": 10.644, "N1N9_dist": 8.930, "C6C8_dist": 9.881, "CNNC_torsion": -0.601, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 6.294, "planarity": 0.074, "simple_Shear": -0.183, "simple_Stretch": -0.121, "simple_Buckle": -6.128, "simple_Propeller": -1.437, "bp_simpleParams": [ -0.183, -0.121, -0.098, -6.128, -1.437, 1.001 ], "bp_params": [ -0.182, -0.123, -0.098, -6.109, -1.519, 1.000 ], "frame": { "rmsd": null, "origin": [ 167.930, 156.227, 225.185 ], "x_axis": [ 0.535, 0.116, -0.837 ], "y_axis": [ 0.431, 0.814, 0.389 ], "z_axis": [ 0.727, -0.568, 0.386 ], "quaternion": [ 0.827, 0.289, 0.473, -0.095 ] } }, { "index": 763, "nt1": "///A/1695", "nt2": "///A/2036", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 170.390, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.871, "chi2": -166.447, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.109, "C1C1_dist": 10.750, "N1N9_dist": 8.937, "C6C8_dist": 9.819, "CNNC_torsion": -8.163, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.94],N1-N3(imino)[2.88]", "interBase_angle": 7.438, "planarity": 0.122, "simple_Shear": 0.068, "simple_Stretch": -0.107, "simple_Buckle": -4.345, "simple_Propeller": -6.037, "bp_simpleParams": [ 0.068, -0.107, 0.253, -4.345, -6.037, -2.438 ], "bp_params": [ 0.067, -0.108, 0.253, -4.420, -5.982, -2.439 ], "frame": { "rmsd": null, "origin": [ 169.706, 153.280, 225.291 ], "x_axis": [ 0.596, 0.617, -0.515 ], "y_axis": [ 0.037, 0.619, 0.784 ], "z_axis": [ 0.802, -0.486, 0.346 ], "quaternion": [ 0.800, 0.397, 0.411, 0.181 ] } }, { "index": 764, "nt1": "///A/1696", "nt2": "///A/2035", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -98.158, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 50.481, "chi2": 178.595, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.854, "C1C1_dist": 10.714, "N1N9_dist": 8.852, "C6C8_dist": 9.722, "CNNC_torsion": 1.659, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.89],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 16.960, "planarity": 0.268, "simple_Shear": -0.188, "simple_Stretch": -0.166, "simple_Buckle": 16.880, "simple_Propeller": -1.646, "bp_simpleParams": [ -0.188, -0.166, -0.164, 16.880, -1.646, -1.125 ], "bp_params": [ -0.186, -0.168, -0.164, 16.904, -1.383, -1.113 ], "frame": { "rmsd": null, "origin": [ 172.583, 151.687, 223.684 ], "x_axis": [ 0.456, 0.889, -0.036 ], "y_axis": [ -0.089, 0.086, 0.992 ], "z_axis": [ 0.886, -0.449, 0.118 ], "quaternion": [ 0.644, 0.559, 0.358, 0.380 ] } }, { "index": 765, "nt1": "///A/1700", "nt2": "///A/2034", "bp": "A-A", "name": "~Sheared", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -179.377, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 3.234, "chi2": -176.397, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 86.647, "C1C1_dist": 9.711, "N1N9_dist": 8.278, "C6C8_dist": 8.490, "CNNC_torsion": -165.296, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.16],N6(amino)-N3[3.05]", "interBase_angle": 8.228, "planarity": 0.145, "simple_Shear": -7.374, "simple_Stretch": 2.282, "simple_Buckle": 7.585, "simple_Propeller": 3.191, "bp_simpleParams": [ -7.374, 2.282, 0.655, 7.585, 3.191, -18.943 ], "bp_params": [ -6.492, -4.176, 0.655, 2.441, 7.858, -18.983 ], "frame": { "rmsd": null, "origin": [ 179.160, 149.352, 216.407 ], "x_axis": [ -0.131, 0.463, 0.876 ], "y_axis": [ 0.322, -0.816, 0.480 ], "z_axis": [ 0.937, 0.345, -0.042 ], "quaternion": [ 0.051, 0.657, 0.299, 0.690 ] } }, { "index": 766, "nt1": "///A/1701", "nt2": "///A/2033", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.869, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.467, "chi2": 176.015, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.212, "C1C1_dist": 10.771, "N1N9_dist": 8.948, "C6C8_dist": 9.855, "CNNC_torsion": -2.853, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 3.863, "planarity": 0.118, "simple_Shear": 0.165, "simple_Stretch": -0.158, "simple_Buckle": 3.599, "simple_Propeller": 1.403, "bp_simpleParams": [ 0.165, -0.158, 0.339, 3.599, 1.403, -0.200 ], "bp_params": [ 0.163, -0.160, 0.339, 3.616, 1.360, -0.200 ], "frame": { "rmsd": null, "origin": [ 181.775, 151.598, 217.387 ], "x_axis": [ 0.193, -0.566, 0.801 ], "y_axis": [ 0.288, -0.748, -0.598 ], "z_axis": [ 0.938, 0.346, 0.019 ], "quaternion": [ -0.341, 0.693, -0.100, 0.627 ] } }, { "index": 767, "nt1": "///A/1702", "nt2": "///A/2032", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.349, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.366, "chi2": -167.832, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.931, "C1C1_dist": 10.894, "N1N9_dist": 9.107, "C6C8_dist": 9.943, "CNNC_torsion": 4.350, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[3.04],O4(carbonyl)-N6(amino)[2.88]", "interBase_angle": 12.444, "planarity": 0.198, "simple_Shear": -0.637, "simple_Stretch": 0.024, "simple_Buckle": 5.600, "simple_Propeller": 11.112, "bp_simpleParams": [ -0.637, 0.024, 0.546, 5.600, 11.112, -4.137 ], "bp_params": [ -0.637, -0.018, 0.546, 4.844, 11.462, -4.154 ], "frame": { "rmsd": null, "origin": [ 184.113, 154.662, 218.673 ], "x_axis": [ 0.103, -0.880, 0.464 ], "y_axis": [ 0.141, -0.449, -0.882 ], "z_axis": [ 0.985, 0.156, 0.078 ], "quaternion": [ -0.428, 0.607, -0.304, 0.597 ] } }, { "index": 768, "nt1": "///A/1703", "nt2": "///A/2031", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.335, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.457, "chi2": 174.064, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.942, "C1C1_dist": 10.693, "N1N9_dist": 8.865, "C6C8_dist": 9.780, "CNNC_torsion": -5.293, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 7.200, "planarity": 0.233, "simple_Shear": 0.228, "simple_Stretch": -0.250, "simple_Buckle": 4.080, "simple_Propeller": 5.932, "bp_simpleParams": [ 0.228, -0.250, 0.744, 4.080, 5.932, 0.916 ], "bp_params": [ 0.224, -0.254, 0.744, 4.187, 5.856, 0.917 ], "frame": { "rmsd": null, "origin": [ 187.168, 154.649, 220.870 ], "x_axis": [ 0.095, -0.984, -0.151 ], "y_axis": [ 0.053, 0.157, -0.986 ], "z_axis": [ 0.994, 0.086, 0.067 ], "quaternion": [ 0.574, -0.467, 0.499, -0.451 ] } }, { "index": 769, "nt1": "///A/1704", "nt2": "///A/2030", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.299, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.240, "chi2": -176.771, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.364, "C1C1_dist": 10.449, "N1N9_dist": 8.771, "C6C8_dist": 9.749, "CNNC_torsion": 0.022, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.82],O4(carbonyl)-N6(amino)[2.96]", "interBase_angle": 9.463, "planarity": 0.175, "simple_Shear": -0.037, "simple_Stretch": -0.182, "simple_Buckle": 6.088, "simple_Propeller": 7.244, "bp_simpleParams": [ -0.037, -0.182, 0.467, 6.088, 7.244, 1.963 ], "bp_params": [ -0.035, -0.182, 0.467, 6.034, 7.289, 1.965 ], "frame": { "rmsd": null, "origin": [ 190.186, 153.851, 222.828 ], "x_axis": [ 0.046, -0.716, -0.696 ], "y_axis": [ 0.028, 0.698, -0.716 ], "z_axis": [ 0.999, 0.013, 0.052 ], "quaternion": [ 0.670, -0.272, 0.632, -0.278 ] } }, { "index": 770, "nt1": "///A/1705", "nt2": "///A/2029", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.437, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.936, "chi2": -166.536, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.505, "C1C1_dist": 10.621, "N1N9_dist": 8.897, "C6C8_dist": 9.847, "CNNC_torsion": 1.804, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.93],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 6.023, "planarity": 0.207, "simple_Shear": 0.156, "simple_Stretch": -0.193, "simple_Buckle": -2.836, "simple_Propeller": -5.314, "bp_simpleParams": [ 0.156, -0.193, -0.708, -2.836, -5.314, 1.402 ], "bp_params": [ 0.154, -0.195, -0.708, -2.898, -5.280, 1.403 ], "frame": { "rmsd": null, "origin": [ 192.963, 151.037, 223.460 ], "x_axis": [ -0.096, -0.239, -0.966 ], "y_axis": [ 0.289, 0.922, -0.257 ], "z_axis": [ 0.952, -0.304, -0.019 ], "quaternion": [ 0.672, 0.018, 0.714, -0.197 ] } }, { "index": 771, "nt1": "///A/1706", "nt2": "///A/2028", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.490, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.243, "chi2": -179.799, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.284, "C1C1_dist": 10.761, "N1N9_dist": 8.915, "C6C8_dist": 9.812, "CNNC_torsion": -3.155, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 7.314, "planarity": 0.192, "simple_Shear": -0.167, "simple_Stretch": -0.188, "simple_Buckle": -6.087, "simple_Propeller": 4.055, "bp_simpleParams": [ -0.167, -0.188, 0.501, -6.087, 4.055, -0.096 ], "bp_params": [ -0.165, -0.190, 0.501, -6.140, 3.975, -0.096 ], "frame": { "rmsd": null, "origin": [ 195.552, 148.294, 223.636 ], "x_axis": [ -0.176, 0.350, -0.920 ], "y_axis": [ 0.237, 0.922, 0.306 ], "z_axis": [ 0.956, -0.164, -0.245 ], "quaternion": [ 0.613, 0.192, 0.765, 0.046 ] } }, { "index": 772, "nt1": "///A/1707", "nt2": "///A/2027", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 175.824, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.091, "chi2": -154.273, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.189, "C1C1_dist": 10.780, "N1N9_dist": 8.971, "C6C8_dist": 9.868, "CNNC_torsion": 2.309, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.94],O4(carbonyl)-N6(amino)[2.97]", "interBase_angle": 12.461, "planarity": 0.161, "simple_Shear": -0.106, "simple_Stretch": -0.068, "simple_Buckle": -3.490, "simple_Propeller": 11.962, "bp_simpleParams": [ -0.106, -0.068, 0.527, -3.490, 11.962, -0.568 ], "bp_params": [ -0.105, -0.069, 0.527, -3.683, 11.905, -0.571 ], "frame": { "rmsd": null, "origin": [ 198.235, 145.804, 221.892 ], "x_axis": [ -0.099, 0.694, -0.714 ], "y_axis": [ 0.271, 0.709, 0.651 ], "z_axis": [ 0.958, -0.129, -0.258 ], "quaternion": [ 0.581, 0.336, 0.719, 0.182 ] } }, { "index": 773, "nt1": "///A/1708", "nt2": "///A/2026", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.502, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.766, "chi2": -175.856, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.707, "C1C1_dist": 10.639, "N1N9_dist": 8.935, "C6C8_dist": 9.876, "CNNC_torsion": 0.187, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.93],O4(carbonyl)-N6(amino)[3.02]", "interBase_angle": 7.718, "planarity": 0.155, "simple_Shear": 0.009, "simple_Stretch": -0.069, "simple_Buckle": 4.771, "simple_Propeller": 6.066, "bp_simpleParams": [ 0.009, -0.069, 0.464, 4.771, 6.066, 0.562 ], "bp_params": [ 0.009, -0.068, 0.464, 4.750, 6.083, 0.562 ], "frame": { "rmsd": null, "origin": [ 200.476, 144.875, 219.142 ], "x_axis": [ -0.142, 0.979, -0.148 ], "y_axis": [ 0.345, 0.189, 0.919 ], "z_axis": [ 0.928, 0.079, -0.365 ], "quaternion": [ 0.413, 0.508, 0.651, 0.383 ] } }, { "index": 774, "nt1": "///A/1709", "nt2": "///A/2025", "bp": "A+C", "name": "--", "Saenger": "--", "LW": "..W", "DSSR": "..+W", "intra_chain": true, "chi1": 164.093, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 11.950, "chi2": -147.198, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 39.398, "C1C1_dist": 12.533, "N1N9_dist": 9.994, "C6C8_dist": 9.816, "CNNC_torsion": 81.991, "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[3.36],N6(amino)*N4(amino)[3.08]", "unusual_base2base_hbonds": 1, "interBase_angle": 26.261, "planarity": 0.307, "simple_Shear": -2.640, "simple_Stretch": 0.981, "simple_Buckle": -25.125, "simple_Propeller": -7.640, "bp_simpleParams": [ -2.640, 0.981, -0.686, -25.125, -7.640, 141.737 ], "bp_params": [ -0.201, -2.809, -0.686, 14.292, -22.032, 142.111 ], "frame": { "rmsd": null, "origin": [ 206.273, 138.222, 216.982 ], "x_axis": [ -0.028, -0.320, -0.947 ], "y_axis": [ -0.733, 0.650, -0.198 ], "z_axis": [ 0.679, 0.689, -0.253 ], "quaternion": [ 0.585, -0.379, 0.695, 0.177 ] } }, { "index": 775, "nt1": "///A/1710", "nt2": "///A/2024", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -154.431, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.406, "chi2": -122.680, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.545, "C1C1_dist": 10.671, "N1N9_dist": 8.914, "C6C8_dist": 9.774, "CNNC_torsion": 4.474, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.98],N1-N3(imino)[2.92]", "interBase_angle": 16.871, "planarity": 0.213, "simple_Shear": 0.192, "simple_Stretch": -0.100, "simple_Buckle": -16.749, "simple_Propeller": -2.027, "bp_simpleParams": [ 0.192, -0.100, -1.043, -16.749, -2.027, -2.514 ], "bp_params": [ 0.189, -0.105, -1.043, -16.796, -1.589, -2.487 ], "frame": { "rmsd": null, "origin": [ 208.362, 140.903, 215.767 ], "x_axis": [ -0.566, 0.693, 0.447 ], "y_axis": [ 0.475, -0.168, 0.864 ], "z_axis": [ 0.674, 0.701, -0.234 ], "quaternion": [ 0.089, 0.457, 0.639, 0.612 ] } }, { "index": 776, "nt1": "///A/1711", "nt2": "///A/2023", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.227, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.473, "chi2": -136.466, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 51.934, "C1C1_dist": 10.701, "N1N9_dist": 8.930, "C6C8_dist": 9.858, "CNNC_torsion": 24.577, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.86]", "interBase_angle": 24.717, "planarity": 0.332, "simple_Shear": -0.079, "simple_Stretch": -0.118, "simple_Buckle": -9.513, "simple_Propeller": 22.813, "bp_simpleParams": [ -0.079, -0.118, -0.285, -9.513, 22.813, 0.174 ], "bp_params": [ -0.077, -0.119, -0.285, -9.702, 22.733, 0.177 ], "frame": { "rmsd": null, "origin": [ 209.182, 144.723, 214.586 ], "x_axis": [ -0.282, 0.584, 0.761 ], "y_axis": [ 0.605, -0.507, 0.613 ], "z_axis": [ 0.745, 0.633, -0.211 ], "quaternion": [ -0.008, 0.599, 0.496, 0.628 ] } }, { "index": 777, "nt1": "///A/1712", "nt2": "///A/1714", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cSH", "DSSR": "cm-M", "intra_chain": true, "chi1": -48.180, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 124.311, "chi2": 100.444, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 20.548, "C1C1_dist": 8.416, "N1N9_dist": 7.894, "C6C8_dist": 7.075, "CNNC_torsion": 3.028, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N7[2.72],O2'(hydroxyl)-N6(amino)[3.32]", "interBase_angle": 33.007, "planarity": 0.555, "simple_Shear": 5.369, "simple_Stretch": 7.549, "simple_Buckle": 23.613, "simple_Propeller": -23.063, "bp_simpleParams": [ 5.369, 7.549, -0.655, 23.613, -23.063, 112.041 ], "bp_params": [ 6.646, -6.454, -0.655, -26.375, -19.845, 111.404 ], "frame": { "rmsd": null, "origin": [ 211.016, 146.980, 215.423 ], "x_axis": [ -0.399, 0.412, 0.820 ], "y_axis": [ -0.441, 0.698, -0.565 ], "z_axis": [ -0.804, -0.586, -0.097 ], "quaternion": [ 0.548, 0.010, -0.740, 0.389 ] } }, { "index": 778, "nt1": "///A/1713", "nt2": "///A/1715", "bp": "A+C", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm+M", "intra_chain": true, "chi1": -152.752, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 98.716, "chi2": -168.599, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 38.557, "C1C1_dist": 7.271, "N1N9_dist": 6.544, "C6C8_dist": 7.079, "CNNC_torsion": 95.182, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N4(amino)[3.35],N3-N4(amino)[2.84]", "interBase_angle": 73.822, "planarity": 0.908, "simple_Shear": 0.363, "simple_Stretch": 3.235, "simple_Buckle": -73.107, "simple_Propeller": 10.247, "bp_simpleParams": [ 0.363, 3.235, -3.104, -73.107, 10.247, -44.008 ], "bp_params": [ 3.188, -0.659, -3.104, 15.557, 72.164, -52.828 ], "frame": { "rmsd": null, "origin": [ 209.170, 154.026, 209.484 ], "x_axis": [ 0.677, 0.244, 0.694 ], "y_axis": [ 0.626, -0.688, -0.369 ], "z_axis": [ 0.388, 0.684, -0.618 ], "quaternion": [ -0.305, 0.864, 0.252, 0.313 ] } }, { "index": 779, "nt1": "///A/1713", "nt2": "///A/1720", "bp": "A+C", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -152.752, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 62.004, "chi2": -177.014, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 28.961, "C1C1_dist": 12.852, "N1N9_dist": 10.905, "C6C8_dist": 10.498, "CNNC_torsion": -44.678, "hbonds_num": 1, "hbonds_desc": "N1-N4(amino)[3.68]", "interBase_angle": 64.252, "planarity": 0.626, "simple_Shear": -2.315, "simple_Stretch": 4.673, "simple_Buckle": 14.168, "simple_Propeller": -62.670, "bp_simpleParams": [ -2.315, 4.673, 1.301, 14.168, -62.670, -82.924 ], "bp_params": [ 3.206, 4.113, 1.301, -51.157, -38.874, -80.510 ], "frame": { "rmsd": null, "origin": [ 206.921, 154.432, 211.294 ], "x_axis": [ 0.316, -0.633, 0.707 ], "y_axis": [ 0.839, -0.160, -0.519 ], "z_axis": [ 0.442, 0.757, 0.481 ], "quaternion": [ 0.640, -0.499, -0.103, -0.576 ] } }, { "index": 780, "nt1": "///A/1713", "nt2": "///A/1721", "bp": "A+A", "name": "--", "Saenger": "--", "LW": ".WW", "DSSR": ".W+W", "intra_chain": true, "chi1": -152.752, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 41.420, "chi2": -174.190, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 32.970, "C1C1_dist": 13.564, "N1N9_dist": 11.289, "C6C8_dist": 11.464, "CNNC_torsion": 85.474, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N1[3.76]", "interBase_angle": 62.339, "planarity": 0.789, "simple_Shear": -1.404, "simple_Stretch": 1.616, "simple_Buckle": -4.747, "simple_Propeller": -62.158, "bp_simpleParams": [ -1.404, 1.616, -2.218, -4.747, -62.158, -151.619 ], "bp_params": [ 1.370, 1.644, -2.218, -62.075, -5.726, -147.144 ], "frame": { "rmsd": null, "origin": [ 209.029, 154.681, 212.666 ], "x_axis": [ 0.718, -0.626, 0.303 ], "y_axis": [ 0.523, 0.198, -0.829 ], "z_axis": [ 0.459, 0.754, 0.470 ], "quaternion": [ 0.772, -0.512, 0.051, -0.372 ] } }, { "index": 781, "nt1": "///A/1713", "nt2": "///A/2020", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -152.752, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 15.806, "chi2": -169.145, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 36.461, "C1C1_dist": 9.833, "N1N9_dist": 7.347, "C6C8_dist": 6.520, "CNNC_torsion": -160.507, "hbonds_num": 2, "hbonds_desc": "N7-N3(imino)[3.05],N6(amino)-O2(carbonyl)[2.79]", "interBase_angle": 10.739, "planarity": 0.139, "simple_Shear": -4.699, "simple_Stretch": 1.329, "simple_Buckle": -9.410, "simple_Propeller": 5.175, "bp_simpleParams": [ -4.699, 1.329, -0.255, -9.410, 5.175, -90.280 ], "bp_params": [ -4.351, -2.217, -0.255, -10.419, -2.601, -90.058 ], "frame": { "rmsd": null, "origin": [ 211.354, 152.305, 212.505 ], "x_axis": [ 0.536, -0.425, 0.729 ], "y_axis": [ 0.606, -0.408, -0.683 ], "z_axis": [ 0.588, 0.808, 0.039 ], "quaternion": [ 0.540, -0.690, -0.065, -0.477 ] } }, { "index": 782, "nt1": "///A/1714", "nt2": "///A/2022", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 100.444, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 48.934, "chi2": 169.469, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.022, "C1C1_dist": 10.732, "N1N9_dist": 8.810, "C6C8_dist": 9.693, "CNNC_torsion": -1.918, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.90],N1-N3(imino)[2.82]", "interBase_angle": 11.588, "planarity": 0.187, "simple_Shear": 0.109, "simple_Stretch": -0.239, "simple_Buckle": 7.226, "simple_Propeller": 9.059, "bp_simpleParams": [ 0.109, -0.239, 0.877, 7.226, 9.059, 0.684 ], "bp_params": [ 0.104, -0.242, 0.877, 7.395, 8.922, 0.685 ], "frame": { "rmsd": null, "origin": [ 210.370, 147.316, 210.876 ], "x_axis": [ 0.417, -0.112, 0.902 ], "y_axis": [ 0.521, -0.783, -0.339 ], "z_axis": [ 0.744, 0.611, -0.269 ], "quaternion": [ -0.302, 0.786, 0.130, 0.524 ] } }, { "index": 783, "nt1": "///A/1719", "nt2": "///A/1721", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm+M", "intra_chain": true, "chi1": -154.239, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 128.805, "chi2": -174.190, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 15.168, "C1C1_dist": 9.150, "N1N9_dist": 8.709, "C6C8_dist": 9.274, "CNNC_torsion": 87.556, "hbonds_num": 1, "hbonds_desc": "N3-N6(amino)[3.52]", "interBase_angle": 59.893, "planarity": 0.722, "simple_Shear": 1.026, "simple_Stretch": 6.126, "simple_Buckle": -39.924, "simple_Propeller": -44.646, "bp_simpleParams": [ 1.026, 6.126, 1.786, -39.924, -44.646, -40.770 ], "bp_params": [ 5.356, -3.144, 1.786, -27.771, 53.065, -44.115 ], "frame": { "rmsd": null, "origin": [ 211.605, 154.560, 213.791 ], "x_axis": [ 0.814, -0.256, -0.521 ], "y_axis": [ -0.205, 0.714, -0.670 ], "z_axis": [ 0.543, 0.652, 0.529 ], "quaternion": [ 0.874, -0.378, 0.304, -0.015 ] } }, { "index": 784, "nt1": "///A/1719", "nt2": "///A/1722", "bp": "G+A", "name": "--", "Saenger": "10-X", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -154.239, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 101.241, "chi2": 174.516, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 34.700, "C1C1_dist": 10.151, "N1N9_dist": 9.419, "C6C8_dist": 10.675, "CNNC_torsion": 118.307, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N1[3.12]", "interBase_angle": 58.936, "planarity": 0.814, "simple_Shear": 2.443, "simple_Stretch": 4.840, "simple_Buckle": -49.923, "simple_Propeller": -31.324, "bp_simpleParams": [ 2.443, 4.840, -1.694, -49.923, -31.324, -83.616 ], "bp_params": [ 3.401, -4.222, -1.694, -6.797, 58.543, -91.330 ], "frame": { "rmsd": null, "origin": [ 212.892, 155.433, 214.803 ], "x_axis": [ 0.661, 0.040, -0.749 ], "y_axis": [ -0.498, 0.770, -0.398 ], "z_axis": [ 0.561, 0.636, 0.530 ], "quaternion": [ 0.860, -0.301, 0.381, 0.156 ] } }, { "index": 785, "nt1": "///A/1719", "nt2": "///A/2019", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -154.239, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 51.855, "chi2": -148.965, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.143, "C1C1_dist": 11.221, "N1N9_dist": 9.392, "C6C8_dist": 10.237, "CNNC_torsion": 13.703, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.32],N1(imino)-N3[3.35],N2(amino)-O2(carbonyl)[3.32]", "interBase_angle": 16.286, "planarity": 0.267, "simple_Shear": 0.067, "simple_Stretch": 0.253, "simple_Buckle": 10.389, "simple_Propeller": 12.543, "bp_simpleParams": [ 0.067, 0.253, -0.618, 10.389, 12.543, -3.994 ], "bp_params": [ 0.071, 0.252, -0.618, 10.581, 12.381, -4.001 ], "frame": { "rmsd": null, "origin": [ 214.814, 153.547, 214.059 ], "x_axis": [ 0.676, -0.641, -0.363 ], "y_axis": [ -0.244, 0.270, -0.932 ], "z_axis": [ 0.695, 0.718, 0.026 ], "quaternion": [ 0.702, -0.587, 0.377, -0.141 ] } }, { "index": 786, "nt1": "///A/1727", "nt2": "///A/1751", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -154.526, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.595, "chi2": -146.949, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 54.045, "C1C1_dist": 10.722, "N1N9_dist": 8.946, "C6C8_dist": 9.843, "CNNC_torsion": 5.937, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.94],N1-N3(imino)[2.88]", "interBase_angle": 10.934, "planarity": 0.131, "simple_Shear": 0.036, "simple_Stretch": -0.073, "simple_Buckle": -8.464, "simple_Propeller": 6.922, "bp_simpleParams": [ 0.036, -0.073, -0.210, -8.464, 6.922, -1.787 ], "bp_params": [ 0.036, -0.073, -0.210, -8.422, 6.974, -1.785 ], "frame": { "rmsd": null, "origin": [ 220.024, 164.582, 238.387 ], "x_axis": [ 0.331, -0.636, -0.697 ], "y_axis": [ -0.436, 0.552, -0.711 ], "z_axis": [ 0.837, 0.539, -0.094 ], "quaternion": [ 0.669, -0.467, 0.574, -0.075 ] } }, { "index": 787, "nt1": "///A/1728", "nt2": "///A/1750", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.246, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.824, "chi2": -159.652, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.145, "C1C1_dist": 10.688, "N1N9_dist": 8.910, "C6C8_dist": 9.845, "CNNC_torsion": 2.325, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 8.011, "planarity": 0.120, "simple_Shear": 0.184, "simple_Stretch": -0.155, "simple_Buckle": 3.932, "simple_Propeller": 6.980, "bp_simpleParams": [ 0.184, -0.155, 0.046, 3.932, 6.980, 0.927 ], "bp_params": [ 0.182, -0.157, 0.046, 4.033, 6.922, 0.928 ], "frame": { "rmsd": null, "origin": [ 223.266, 165.234, 238.020 ], "x_axis": [ -0.031, -0.335, -0.942 ], "y_axis": [ -0.547, 0.794, -0.265 ], "z_axis": [ 0.837, 0.507, -0.208 ], "quaternion": [ 0.623, -0.309, 0.713, 0.085 ] } }, { "index": 788, "nt1": "///A/1729", "nt2": "///A/1749", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.047, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.198, "chi2": -175.658, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.219, "C1C1_dist": 10.503, "N1N9_dist": 8.863, "C6C8_dist": 9.859, "CNNC_torsion": 0.863, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.71],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 6.404, "planarity": 0.119, "simple_Shear": 0.196, "simple_Stretch": -0.153, "simple_Buckle": 5.687, "simple_Propeller": 2.944, "bp_simpleParams": [ 0.196, -0.153, 0.155, 5.687, 2.944, 2.169 ], "bp_params": [ 0.193, -0.156, 0.155, 5.734, 2.851, 2.167 ], "frame": { "rmsd": null, "origin": [ 226.667, 165.111, 236.681 ], "x_axis": [ -0.388, 0.144, -0.910 ], "y_axis": [ -0.423, 0.850, 0.314 ], "z_axis": [ 0.819, 0.507, -0.269 ], "quaternion": [ 0.546, -0.088, 0.792, 0.259 ] } }, { "index": 789, "nt1": "///A/1730", "nt2": "///A/1748", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 177.472, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.089, "chi2": -177.144, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.800, "C1C1_dist": 10.769, "N1N9_dist": 8.928, "C6C8_dist": 9.841, "CNNC_torsion": 3.405, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 5.488, "planarity": 0.078, "simple_Shear": 0.173, "simple_Stretch": -0.173, "simple_Buckle": 1.875, "simple_Propeller": 5.158, "bp_simpleParams": [ 0.173, -0.173, 0.010, 1.875, 5.158, -0.324 ], "bp_params": [ 0.170, -0.175, 0.010, 1.941, 5.133, -0.324 ], "frame": { "rmsd": null, "origin": [ 229.782, 165.001, 234.634 ], "x_axis": [ -0.748, 0.451, -0.486 ], "y_axis": [ -0.044, 0.697, 0.715 ], "z_axis": [ 0.662, 0.557, -0.502 ], "quaternion": [ 0.334, 0.118, 0.858, 0.371 ] } }, { "index": 790, "nt1": "///A/1731", "nt2": "///A/1747", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.982, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 66.408, "chi2": 178.344, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 42.572, "C1C1_dist": 10.700, "N1N9_dist": 9.031, "C6C8_dist": 9.968, "CNNC_torsion": -7.856, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.99],N3*O6(carbonyl)[3.04]", "unusual_base2base_hbonds": 1, "interBase_angle": 5.746, "planarity": 0.098, "simple_Shear": 2.441, "simple_Stretch": 0.253, "simple_Buckle": 4.789, "simple_Propeller": -3.175, "bp_simpleParams": [ 2.441, 0.253, 0.235, 4.789, -3.175, 2.109 ], "bp_params": [ 2.431, -0.338, 0.235, 3.892, -4.227, 2.109 ], "frame": { "rmsd": null, "origin": [ 231.479, 165.392, 231.136 ], "x_axis": [ -0.692, 0.699, 0.181 ], "y_axis": [ 0.474, 0.251, 0.844 ], "z_axis": [ 0.544, 0.670, -0.505 ], "quaternion": [ 0.116, 0.375, 0.782, 0.484 ] } }, { "index": 791, "nt1": "///A/1732", "nt2": "///A/1746", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -158.146, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 94.378, "chi2": -150.357, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 7.752, "C1C1_dist": 9.567, "N1N9_dist": 8.325, "C6C8_dist": 8.796, "CNNC_torsion": -116.565, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[3.08],N2(amino)-N7[2.81],N3-N6(amino)[2.89]", "interBase_angle": 25.825, "planarity": 0.304, "simple_Shear": 7.333, "simple_Stretch": 2.332, "simple_Buckle": 7.955, "simple_Propeller": -24.569, "bp_simpleParams": [ 7.333, 2.332, 0.648, 7.955, -24.569, -4.549 ], "bp_params": [ 6.542, -4.051, 0.648, -13.570, -21.972, -4.603 ], "frame": { "rmsd": null, "origin": [ 233.562, 167.124, 227.685 ], "x_axis": [ -0.156, 0.516, 0.842 ], "y_axis": [ 0.916, -0.244, 0.319 ], "z_axis": [ 0.370, 0.821, -0.435 ], "quaternion": [ -0.204, 0.617, 0.580, 0.491 ] } }, { "index": 792, "nt1": "///A/1734", "nt2": "///A/1743", "bp": "A+A", "name": "--", "Saenger": "02-II", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": -168.952, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 16.832, "chi2": -138.430, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 20.078, "C1C1_dist": 11.105, "N1N9_dist": 8.347, "C6C8_dist": 6.421, "CNNC_torsion": -98.725, "hbonds_num": 3, "hbonds_desc": "OP2-N6(amino)[2.73],N7-N6(amino)[3.31],N6(amino)-N7[3.25]", "interBase_angle": 27.742, "planarity": 0.413, "simple_Shear": -8.013, "simple_Stretch": 1.006, "simple_Buckle": -27.588, "simple_Propeller": 2.919, "bp_simpleParams": [ -8.013, 1.006, -0.769, -27.588, 2.919, 175.988 ], "bp_params": [ 5.993, -5.414, -0.769, 20.980, -18.151, 175.969 ], "frame": { "rmsd": null, "origin": [ 234.596, 171.962, 219.885 ], "x_axis": [ -0.785, 0.192, -0.590 ], "y_axis": [ -0.421, 0.534, 0.733 ], "z_axis": [ 0.455, 0.823, -0.338 ], "quaternion": [ 0.320, -0.070, 0.815, 0.478 ] } }, { "index": 793, "nt1": "///A/1735", "nt2": "///A/1742", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -164.068, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 11.309, "chi2": -146.931, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 95.174, "C1C1_dist": 9.994, "N1N9_dist": 8.758, "C6C8_dist": 9.211, "CNNC_torsion": 20.820, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[3.09],N6(amino)-N3[2.90]", "interBase_angle": 11.064, "planarity": 0.266, "simple_Shear": -7.091, "simple_Stretch": 2.388, "simple_Buckle": -10.862, "simple_Propeller": 2.106, "bp_simpleParams": [ -7.091, 2.388, -1.028, -10.862, 2.106, -4.057 ], "bp_params": [ -6.633, -3.462, -1.028, -9.038, -6.382, -4.051 ], "frame": { "rmsd": null, "origin": [ 235.529, 174.056, 217.358 ], "x_axis": [ -0.047, 0.388, 0.921 ], "y_axis": [ 0.898, -0.388, 0.209 ], "z_axis": [ 0.438, 0.836, -0.330 ], "quaternion": [ -0.243, 0.646, 0.497, 0.526 ] } }, { "index": 794, "nt1": "///A/1736", "nt2": "///A/1741", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.853, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.396, "chi2": -162.383, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.067, "C1C1_dist": 10.576, "N1N9_dist": 8.873, "C6C8_dist": 9.849, "CNNC_torsion": 4.622, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.97]", "interBase_angle": 0.735, "planarity": 0.154, "simple_Shear": 0.205, "simple_Stretch": -0.197, "simple_Buckle": 0.692, "simple_Propeller": 0.247, "bp_simpleParams": [ 0.205, -0.197, -0.719, 0.692, 0.247, 1.761 ], "bp_params": [ 0.202, -0.200, -0.719, 0.696, 0.236, 1.761 ], "frame": { "rmsd": null, "origin": [ 237.290, 177.168, 216.677 ], "x_axis": [ 0.710, -0.183, 0.680 ], "y_axis": [ 0.471, -0.594, -0.652 ], "z_axis": [ 0.523, 0.783, -0.336 ], "quaternion": [ -0.442, 0.812, 0.089, 0.370 ] } }, { "index": 795, "nt1": "///A/1737", "nt2": "///A/1740", "bp": "U+G", "name": "--", "Saenger": "--", "LW": "t.W", "DSSR": "t.+W", "intra_chain": true, "chi1": -153.658, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 96.046, "chi2": 59.392, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 13.316, "C1C1_dist": 9.755, "N1N9_dist": 8.663, "C6C8_dist": 9.886, "CNNC_torsion": 176.532, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O6(carbonyl)[2.98],O2(carbonyl)-N1(imino)[2.81]", "interBase_angle": 18.516, "planarity": 0.249, "simple_Shear": 3.140, "simple_Stretch": 2.936, "simple_Buckle": 17.912, "simple_Propeller": -4.691, "bp_simpleParams": [ 3.140, 2.936, 0.118, 17.912, -4.691, -100.685 ], "bp_params": [ 1.439, -4.051, 0.118, -11.424, -14.572, -100.860 ], "frame": { "rmsd": null, "origin": [ 238.415, 180.707, 216.912 ], "x_axis": [ 0.438, -0.633, -0.638 ], "y_axis": [ -0.573, 0.350, -0.741 ], "z_axis": [ 0.693, 0.690, -0.209 ], "quaternion": [ 0.628, -0.569, 0.530, -0.024 ] } }, { "index": 796, "nt1": "///A/1738", "nt2": "///A/1858", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -121.749, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 55.191, "chi2": 157.071, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 43.473, "C1C1_dist": 11.041, "N1N9_dist": 9.138, "C6C8_dist": 9.856, "CNNC_torsion": -3.326, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[3.28],O4(carbonyl)-N6(amino)[3.00]", "interBase_angle": 21.847, "planarity": 0.263, "simple_Shear": 0.660, "simple_Stretch": 0.150, "simple_Buckle": -21.484, "simple_Propeller": -3.965, "bp_simpleParams": [ 0.660, 0.150, 0.301, -21.484, -3.965, -9.230 ], "bp_params": [ 0.668, 0.106, 0.301, -21.704, -2.493, -9.068 ], "frame": { "rmsd": null, "origin": [ 231.760, 186.219, 206.374 ], "x_axis": [ -0.025, -0.884, -0.467 ], "y_axis": [ 0.746, -0.327, 0.580 ], "z_axis": [ -0.665, -0.334, 0.668 ], "quaternion": [ 0.574, 0.398, -0.087, -0.711 ] } }, { "index": 797, "nt1": "///A/1752", "nt2": "///A/1780", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 173.230, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 48.870, "chi2": 179.079, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.058, "C1C1_dist": 10.853, "N1N9_dist": 8.936, "C6C8_dist": 9.795, "CNNC_torsion": -6.533, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.86],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 4.410, "planarity": 0.087, "simple_Shear": -0.182, "simple_Stretch": -0.210, "simple_Buckle": 4.338, "simple_Propeller": 0.795, "bp_simpleParams": [ -0.182, -0.210, 0.456, 4.338, 0.795, -2.003 ], "bp_params": [ -0.179, -0.212, 0.456, 4.327, 0.851, -2.002 ], "frame": { "rmsd": null, "origin": [ 219.916, 155.864, 252.166 ], "x_axis": [ 0.954, 0.012, -0.298 ], "y_axis": [ -0.256, 0.547, -0.797 ], "z_axis": [ 0.154, 0.837, 0.525 ], "quaternion": [ 0.870, -0.469, 0.130, 0.077 ] } }, { "index": 798, "nt1": "///A/1753", "nt2": "///A/1779", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.710, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.308, "chi2": 172.314, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.193, "C1C1_dist": 10.660, "N1N9_dist": 8.896, "C6C8_dist": 9.840, "CNNC_torsion": 2.306, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 3.424, "planarity": 0.053, "simple_Shear": 0.208, "simple_Stretch": -0.175, "simple_Buckle": 3.179, "simple_Propeller": -1.273, "bp_simpleParams": [ 0.208, -0.175, -0.273, 3.179, -1.273, 0.597 ], "bp_params": [ 0.205, -0.179, -0.273, 3.158, -1.323, 0.597 ], "frame": { "rmsd": null, "origin": [ 221.482, 157.604, 255.031 ], "x_axis": [ 0.602, 0.383, -0.700 ], "y_axis": [ -0.778, 0.479, -0.406 ], "z_axis": [ 0.180, 0.789, 0.587 ], "quaternion": [ 0.817, -0.366, 0.270, 0.355 ] } }, { "index": 799, "nt1": "///A/1754", "nt2": "///A/1778", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.596, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.688, "chi2": 163.062, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.771, "C1C1_dist": 10.707, "N1N9_dist": 8.897, "C6C8_dist": 9.802, "CNNC_torsion": -1.410, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.85],O4(carbonyl)-N6(amino)[2.92]", "interBase_angle": 6.517, "planarity": 0.113, "simple_Shear": -0.065, "simple_Stretch": -0.136, "simple_Buckle": 2.099, "simple_Propeller": 6.170, "bp_simpleParams": [ -0.065, -0.136, 0.340, 2.099, 6.170, -0.553 ], "bp_params": [ -0.063, -0.137, 0.340, 2.026, 6.194, -0.554 ], "frame": { "rmsd": null, "origin": [ 223.669, 159.381, 257.633 ], "x_axis": [ 0.091, 0.424, -0.901 ], "y_axis": [ -0.987, 0.157, -0.025 ], "z_axis": [ 0.131, 0.892, 0.433 ], "quaternion": [ 0.648, -0.354, 0.398, 0.544 ] } }, { "index": 800, "nt1": "///A/1754", "nt2": "///A/2884", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -170.596, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 153.280, "chi2": -145.347, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 101.284, "C1C1_dist": 5.649, "N1N9_dist": 7.329, "C6C8_dist": 9.868, "CNNC_torsion": -25.238, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N3[2.98],O2(carbonyl)-N2(amino)[2.68]", "interBase_angle": 25.226, "planarity": 0.281, "simple_Shear": 0.581, "simple_Stretch": 7.684, "simple_Buckle": -15.060, "simple_Propeller": -20.237, "bp_simpleParams": [ 0.581, 7.684, 0.723, -15.060, -20.237, 153.824 ], "bp_params": [ 2.302, 7.354, 0.723, -19.206, -16.355, 153.719 ], "frame": { "rmsd": null, "origin": [ 222.920, 157.436, 260.897 ], "x_axis": [ 0.945, -0.209, -0.251 ], "y_axis": [ -0.099, 0.549, -0.830 ], "z_axis": [ 0.311, 0.809, 0.498 ], "quaternion": [ 0.865, -0.474, 0.162, -0.032 ] } }, { "index": 801, "nt1": "///A/1755", "nt2": "///A/1777", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.849, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.887, "chi2": 154.792, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 47.309, "C1C1_dist": 10.860, "N1N9_dist": 8.928, "C6C8_dist": 9.771, "CNNC_torsion": -4.065, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.82],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.85]", "interBase_angle": 7.745, "planarity": 0.175, "simple_Shear": 0.183, "simple_Stretch": -0.220, "simple_Buckle": 6.876, "simple_Propeller": 3.564, "bp_simpleParams": [ 0.183, -0.220, 0.366, 6.876, 3.564, -2.135 ], "bp_params": [ 0.180, -0.223, 0.366, 6.925, 3.469, -2.132 ], "frame": { "rmsd": null, "origin": [ 225.844, 161.883, 258.712 ], "x_axis": [ -0.509, 0.377, -0.774 ], "y_axis": [ -0.852, -0.095, 0.514 ], "z_axis": [ 0.120, 0.921, 0.369 ], "quaternion": [ 0.438, -0.233, 0.511, 0.702 ] } }, { "index": 802, "nt1": "///A/1756", "nt2": "///A/1776", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.999, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.004, "chi2": 166.333, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.272, "C1C1_dist": 10.537, "N1N9_dist": 8.808, "C6C8_dist": 9.741, "CNNC_torsion": 2.772, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.80],O4(carbonyl)-N6(amino)[2.92]", "interBase_angle": 15.166, "planarity": 0.168, "simple_Shear": -0.122, "simple_Stretch": -0.120, "simple_Buckle": 15.161, "simple_Propeller": -0.390, "bp_simpleParams": [ -0.122, -0.120, -0.401, 15.161, -0.390, 0.089 ], "bp_params": [ -0.120, -0.122, -0.401, 15.165, -0.118, 0.088 ], "frame": { "rmsd": null, "origin": [ 227.072, 164.941, 258.393 ], "x_axis": [ -0.857, 0.268, -0.439 ], "y_axis": [ -0.492, -0.180, 0.851 ], "z_axis": [ 0.149, 0.946, 0.287 ], "quaternion": [ 0.249, -0.095, 0.590, 0.762 ] } }, { "index": 803, "nt1": "///A/1757", "nt2": "///A/1775", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": 56.114, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 14.864, "chi2": -161.071, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 26.507, "C1C1_dist": 12.240, "N1N9_dist": 9.545, "C6C8_dist": 8.448, "CNNC_torsion": 114.311, "hbonds_num": 3, "hbonds_desc": "N7*O6(carbonyl)[3.08],O6(carbonyl)-N1(imino)[2.14],O6(carbonyl)-N2(amino)[2.82]", "unusual_base2base_hbonds": 1, "interBase_angle": 19.967, "planarity": 0.299, "simple_Shear": -2.638, "simple_Stretch": 1.894, "simple_Buckle": 19.932, "simple_Propeller": 1.189, "bp_simpleParams": [ -2.638, 1.894, -0.632, 19.932, 1.189, -88.873 ], "bp_params": [ -3.153, 0.778, -0.632, 18.068, 8.498, -88.316 ], "frame": { "rmsd": null, "origin": [ 228.433, 168.281, 259.236 ], "x_axis": [ -0.624, 0.282, -0.729 ], "y_axis": [ -0.755, 0.024, 0.655 ], "z_axis": [ 0.203, 0.959, 0.198 ], "quaternion": [ 0.387, -0.196, 0.602, 0.670 ] } }, { "index": 804, "nt1": "///A/1759", "nt2": "///A/1774", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -176.566, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 41.773, "chi2": -177.607, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 25.465, "C1C1_dist": 8.825, "N1N9_dist": 6.593, "C6C8_dist": 5.966, "CNNC_torsion": -171.658, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)*N7[2.58],O2(carbonyl)-N6(amino)[2.99],N3(imino)-N7[2.98]", "unusual_base2base_hbonds": 1, "interBase_angle": 5.264, "planarity": 0.156, "simple_Shear": 5.831, "simple_Stretch": 1.689, "simple_Buckle": 5.150, "simple_Propeller": -1.091, "bp_simpleParams": [ 5.831, 1.689, 0.556, 5.150, -1.091, -86.940 ], "bp_params": [ 4.747, -3.785, 0.556, 2.084, -4.834, -86.982 ], "frame": { "rmsd": null, "origin": [ 229.458, 173.302, 255.755 ], "x_axis": [ -0.892, -0.057, 0.449 ], "y_axis": [ 0.432, -0.408, 0.804 ], "z_axis": [ 0.138, 0.911, 0.389 ], "quaternion": [ -0.149, 0.179, 0.523, 0.820 ] } }, { "index": 805, "nt1": "///A/1760", "nt2": "///A/1773", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -166.105, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 6.393, "chi2": -175.065, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 88.513, "C1C1_dist": 10.299, "N1N9_dist": 8.894, "C6C8_dist": 9.223, "CNNC_torsion": 139.159, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.78],N6(amino)-O2'(hydroxyl)[3.34],N6(amino)-N3[2.99]", "interBase_angle": 6.289, "planarity": 0.189, "simple_Shear": -7.078, "simple_Stretch": 2.458, "simple_Buckle": -6.248, "simple_Propeller": -0.717, "bp_simpleParams": [ -7.078, 2.458, -0.810, -6.248, -0.717, -12.591 ], "bp_params": [ -6.660, -3.431, -0.810, -3.790, -5.019, -12.596 ], "frame": { "rmsd": null, "origin": [ 225.404, 176.696, 257.048 ], "x_axis": [ -0.956, -0.091, 0.277 ], "y_axis": [ 0.292, -0.274, 0.916 ], "z_axis": [ -0.007, 0.957, 0.289 ], "quaternion": [ -0.121, 0.085, 0.590, 0.794 ] } }, { "index": 806, "nt1": "///A/1761", "nt2": "///A/1772", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.311, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.244, "chi2": -158.518, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.693, "C1C1_dist": 10.736, "N1N9_dist": 8.940, "C6C8_dist": 9.847, "CNNC_torsion": -2.380, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.81]", "interBase_angle": 7.398, "planarity": 0.080, "simple_Shear": -0.242, "simple_Stretch": -0.155, "simple_Buckle": -6.758, "simple_Propeller": -3.010, "bp_simpleParams": [ -0.242, -0.155, -0.219, -6.758, -3.010, -1.031 ], "bp_params": [ -0.239, -0.159, -0.219, -6.702, -3.132, -1.029 ], "frame": { "rmsd": null, "origin": [ 223.813, 180.209, 258.449 ], "x_axis": [ -0.341, -0.277, 0.898 ], "y_axis": [ 0.940, -0.125, 0.318 ], "z_axis": [ 0.025, 0.953, 0.303 ], "quaternion": [ -0.457, 0.347, 0.478, 0.665 ] } }, { "index": 807, "nt1": "///A/1762", "nt2": "///A/1771", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.353, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.733, "chi2": 177.326, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.655, "C1C1_dist": 10.771, "N1N9_dist": 8.922, "C6C8_dist": 9.829, "CNNC_torsion": 3.363, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 2.591, "planarity": 0.066, "simple_Shear": -0.169, "simple_Stretch": -0.186, "simple_Buckle": -1.450, "simple_Propeller": 2.147, "bp_simpleParams": [ -0.169, -0.186, -0.320, -1.450, 2.147, -0.979 ], "bp_params": [ -0.167, -0.188, -0.320, -1.477, 2.129, -0.979 ], "frame": { "rmsd": null, "origin": [ 221.617, 182.917, 259.797 ], "x_axis": [ 0.236, -0.379, 0.895 ], "y_axis": [ 0.971, 0.116, -0.207 ], "z_axis": [ -0.025, 0.918, 0.395 ], "quaternion": [ 0.661, -0.426, -0.348, -0.511 ] } }, { "index": 808, "nt1": "///A/1763", "nt2": "///A/1770", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.392, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.792, "chi2": -169.022, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.310, "C1C1_dist": 10.645, "N1N9_dist": 8.911, "C6C8_dist": 9.857, "CNNC_torsion": 3.285, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 7.927, "planarity": 0.116, "simple_Shear": -0.164, "simple_Stretch": -0.150, "simple_Buckle": -2.396, "simple_Propeller": 7.556, "bp_simpleParams": [ -0.164, -0.150, 0.102, -2.396, 7.556, 0.961 ], "bp_params": [ -0.162, -0.152, 0.102, -2.491, 7.526, 0.963 ], "frame": { "rmsd": null, "origin": [ 219.869, 185.331, 262.238 ], "x_axis": [ 0.700, -0.371, 0.611 ], "y_axis": [ 0.711, 0.276, -0.647 ], "z_axis": [ 0.071, 0.887, 0.457 ], "quaternion": [ 0.780, -0.492, -0.173, -0.347 ] } }, { "index": 809, "nt1": "///A/1764", "nt2": "///A/1769", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.436, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 74.405, "chi2": -175.169, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 42.220, "C1C1_dist": 10.360, "N1N9_dist": 8.885, "C6C8_dist": 9.901, "CNNC_torsion": 11.971, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.78],N3(imino)-O6(carbonyl)[3.04]", "interBase_angle": 12.603, "planarity": 0.166, "simple_Shear": 3.016, "simple_Stretch": 0.368, "simple_Buckle": -1.391, "simple_Propeller": 12.526, "bp_simpleParams": [ 3.016, 0.368, -0.141, -1.391, 12.526, 5.360 ], "bp_params": [ 2.988, -0.549, -0.141, 2.417, 12.369, 5.390 ], "frame": { "rmsd": null, "origin": [ 220.104, 187.294, 265.090 ], "x_axis": [ 0.993, -0.122, -0.009 ], "y_axis": [ 0.054, 0.504, -0.862 ], "z_axis": [ 0.110, 0.855, 0.507 ], "quaternion": [ 0.866, -0.496, 0.034, -0.051 ] } }, { "index": 810, "nt1": "///A/1765", "nt2": "///A/1768", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": 178.650, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 103.648, "chi2": -167.756, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 8.613, "C1C1_dist": 9.020, "N1N9_dist": 8.017, "C6C8_dist": 8.457, "CNNC_torsion": -112.658, "hbonds_num": 3, "hbonds_desc": "N2(amino)-OP2[2.73],N2(amino)-N7[2.87],N3-N6(amino)[3.11]", "interBase_angle": 17.624, "planarity": 0.276, "simple_Shear": 7.693, "simple_Stretch": 2.483, "simple_Buckle": 5.507, "simple_Propeller": 16.742, "bp_simpleParams": [ 7.693, 2.483, 0.433, 5.507, 16.742, -1.091 ], "bp_params": [ 6.660, -4.582, 0.433, 16.615, 5.879, -1.081 ], "frame": { "rmsd": null, "origin": [ 219.885, 188.912, 267.704 ], "x_axis": [ 0.773, 0.145, -0.618 ], "y_axis": [ -0.605, 0.462, -0.649 ], "z_axis": [ 0.192, 0.875, 0.445 ], "quaternion": [ 0.819, -0.465, 0.247, 0.229 ] } }, { "index": 811, "nt1": "///A/1779", "nt2": "///A/2885", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": 172.314, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 88.315, "chi2": -146.414, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.105, "C1C1_dist": 8.801, "N1N9_dist": 8.332, "C6C8_dist": 10.542, "CNNC_torsion": 175.128, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.07],N2(amino)-N3[3.07]", "interBase_angle": 9.998, "planarity": 0.151, "simple_Shear": 6.600, "simple_Stretch": 3.911, "simple_Buckle": -7.487, "simple_Propeller": -6.626, "bp_simpleParams": [ 6.600, 3.911, 0.008, -7.487, -6.626, -145.116 ], "bp_params": [ -1.903, -7.432, 0.008, 0.613, 9.979, -145.240 ], "frame": { "rmsd": null, "origin": [ 220.965, 155.529, 258.272 ], "x_axis": [ 0.906, -0.397, 0.146 ], "y_axis": [ -0.343, -0.488, 0.803 ], "z_axis": [ -0.247, -0.778, -0.578 ], "quaternion": [ 0.459, 0.862, -0.214, -0.029 ] } }, { "index": 812, "nt1": "///A/1781", "nt2": "///A/1785", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 175.423, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.736, "chi2": -108.348, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.251, "C1C1_dist": 10.516, "N1N9_dist": 8.764, "C6C8_dist": 9.686, "CNNC_torsion": -12.612, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.88]", "interBase_angle": 1.984, "planarity": 0.276, "simple_Shear": 0.121, "simple_Stretch": -0.388, "simple_Buckle": 1.971, "simple_Propeller": -0.225, "bp_simpleParams": [ 0.121, -0.388, 1.136, 1.971, -0.225, 0.101 ], "bp_params": [ 0.118, -0.389, 1.136, 1.969, -0.241, 0.101 ], "frame": { "rmsd": null, "origin": [ 218.519, 154.228, 249.149 ], "x_axis": [ 0.995, -0.097, -0.023 ], "y_axis": [ -0.029, -0.509, 0.860 ], "z_axis": [ -0.095, -0.855, -0.509 ], "quaternion": [ 0.494, 0.868, -0.036, -0.034 ] } }, { "index": 813, "nt1": "///A/1783", "nt2": "///A/2745", "bp": "C-U", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": -166.852, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 30.033, "chi2": -163.765, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 135.696, "C1C1_dist": 8.511, "N1N9_dist": 8.313, "C6C8_dist": 9.686, "CNNC_torsion": -44.151, "hbonds_num": 2, "hbonds_desc": "N3-O2'(hydroxyl)[3.03],N4(amino)-O2(carbonyl)[3.44]", "interBase_angle": 24.980, "planarity": 0.345, "simple_Shear": -6.164, "simple_Stretch": 3.535, "simple_Buckle": -23.281, "simple_Propeller": -9.054, "bp_simpleParams": [ -6.164, 3.535, 1.352, -23.281, -9.054, 59.075 ], "bp_params": [ -6.871, -1.812, 1.352, -10.307, -22.754, 59.859 ], "frame": { "rmsd": null, "origin": [ 205.473, 149.793, 241.647 ], "x_axis": [ -0.969, 0.117, 0.217 ], "y_axis": [ 0.087, -0.663, 0.744 ], "z_axis": [ 0.231, 0.740, 0.632 ], "quaternion": [ 0.008, 0.124, 0.411, 0.903 ] } }, { "index": 814, "nt1": "///A/1784", "nt2": "///A/2723", "bp": "A+G", "name": "--", "Saenger": "10-X", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": 174.966, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 6.246, "chi2": -165.611, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 114.266, "C1C1_dist": 10.200, "N1N9_dist": 9.457, "C6C8_dist": 10.333, "CNNC_torsion": -167.785, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.54],N1-N2(amino)[3.52]", "interBase_angle": 22.397, "planarity": 0.293, "simple_Shear": 2.227, "simple_Stretch": 5.289, "simple_Buckle": -18.236, "simple_Propeller": 13.004, "bp_simpleParams": [ 2.227, 5.289, 0.682, -18.236, 13.004, 68.745 ], "bp_params": [ -3.986, 4.128, 0.682, -19.107, -11.687, 68.281 ], "frame": { "rmsd": null, "origin": [ 205.716, 152.755, 243.402 ], "x_axis": [ -0.727, -0.350, 0.591 ], "y_axis": [ 0.658, -0.599, 0.456 ], "z_axis": [ 0.194, 0.721, 0.666 ], "quaternion": [ -0.291, 0.227, 0.340, 0.865 ] } }, { "index": 815, "nt1": "///A/1793", "nt2": "///A/2017", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.403, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.599, "chi2": -171.268, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.809, "C1C1_dist": 10.403, "N1N9_dist": 8.786, "C6C8_dist": 9.810, "CNNC_torsion": -0.485, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.68]", "interBase_angle": 9.007, "planarity": 0.196, "simple_Shear": -0.225, "simple_Stretch": -0.231, "simple_Buckle": 3.365, "simple_Propeller": 8.355, "bp_simpleParams": [ -0.225, -0.231, 0.787, 3.365, 8.355, 4.493 ], "bp_params": [ -0.221, -0.235, 0.787, 3.217, 8.413, 4.503 ], "frame": { "rmsd": null, "origin": [ 220.105, 158.725, 216.031 ], "x_axis": [ -0.468, -0.017, -0.884 ], "y_axis": [ -0.706, 0.609, 0.362 ], "z_axis": [ 0.532, 0.793, -0.297 ], "quaternion": [ 0.459, -0.235, 0.770, 0.375 ] } }, { "index": 816, "nt1": "///A/1794", "nt2": "///A/2016", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.231, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.809, "chi2": -177.469, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.844, "C1C1_dist": 10.490, "N1N9_dist": 8.853, "C6C8_dist": 9.855, "CNNC_torsion": 2.260, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 9.742, "planarity": 0.201, "simple_Shear": 0.210, "simple_Stretch": -0.157, "simple_Buckle": 6.211, "simple_Propeller": 7.506, "bp_simpleParams": [ 0.210, -0.157, 0.396, 6.211, 7.506, 3.339 ], "bp_params": [ 0.207, -0.160, 0.396, 6.343, 7.394, 3.341 ], "frame": { "rmsd": null, "origin": [ 222.490, 160.034, 213.224 ], "x_axis": [ -0.775, 0.283, -0.565 ], "y_axis": [ -0.331, 0.580, 0.744 ], "z_axis": [ 0.538, 0.764, -0.356 ], "quaternion": [ 0.335, -0.015, 0.823, 0.458 ] } }, { "index": 817, "nt1": "///A/1795", "nt2": "///A/2015", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.118, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.014, "chi2": -179.308, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.389, "C1C1_dist": 10.562, "N1N9_dist": 8.858, "C6C8_dist": 9.834, "CNNC_torsion": -2.421, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 6.468, "planarity": 0.141, "simple_Shear": 0.223, "simple_Stretch": -0.185, "simple_Buckle": -2.692, "simple_Propeller": -5.881, "bp_simpleParams": [ 0.223, -0.185, -0.348, -2.692, -5.881, 2.001 ], "bp_params": [ 0.220, -0.189, -0.348, -2.798, -5.832, 2.003 ], "frame": { "rmsd": null, "origin": [ 224.188, 161.359, 209.963 ], "x_axis": [ -0.883, 0.470, -0.006 ], "y_axis": [ 0.239, 0.460, 0.855 ], "z_axis": [ 0.404, 0.753, -0.519 ], "quaternion": [ 0.121, 0.210, 0.846, 0.475 ] } }, { "index": 818, "nt1": "///A/1796", "nt2": "///A/2014", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.884, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.158, "chi2": 176.881, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.946, "C1C1_dist": 10.779, "N1N9_dist": 8.904, "C6C8_dist": 9.789, "CNNC_torsion": -10.039, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.88]", "interBase_angle": 2.471, "planarity": 0.169, "simple_Shear": 0.145, "simple_Stretch": -0.243, "simple_Buckle": 1.880, "simple_Propeller": -1.603, "bp_simpleParams": [ 0.145, -0.243, 0.676, 1.880, -1.603, -1.423 ], "bp_params": [ 0.143, -0.244, 0.676, 1.865, -1.621, -1.423 ], "frame": { "rmsd": null, "origin": [ 224.667, 163.071, 206.265 ], "x_axis": [ -0.668, 0.618, 0.414 ], "y_axis": [ 0.584, 0.091, 0.807 ], "z_axis": [ 0.461, 0.781, -0.422 ], "quaternion": [ 0.016, 0.407, 0.738, 0.538 ] } }, { "index": 819, "nt1": "///A/1797", "nt2": "///A/2013", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 163.931, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.476, "chi2": -161.252, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.839, "C1C1_dist": 10.779, "N1N9_dist": 8.913, "C6C8_dist": 9.752, "CNNC_torsion": -15.159, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.92],N1-N3(imino)[2.89]", "interBase_angle": 7.541, "planarity": 0.221, "simple_Shear": 0.007, "simple_Stretch": -0.210, "simple_Buckle": -3.603, "simple_Propeller": -6.625, "bp_simpleParams": [ 0.007, -0.210, 0.794, -3.603, -6.625, -4.429 ], "bp_params": [ 0.005, -0.210, 0.794, -3.645, -6.602, -4.434 ], "frame": { "rmsd": null, "origin": [ 223.918, 166.062, 203.568 ], "x_axis": [ -0.439, 0.451, 0.777 ], "y_axis": [ 0.823, -0.146, 0.549 ], "z_axis": [ 0.361, 0.881, -0.307 ], "quaternion": [ -0.165, 0.503, 0.633, 0.565 ] } }, { "index": 820, "nt1": "///A/1798", "nt2": "///A/2012", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 174.547, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.530, "chi2": -167.806, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.227, "C1C1_dist": 10.487, "N1N9_dist": 8.790, "C6C8_dist": 9.754, "CNNC_torsion": -9.000, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.89],N1(imino)-N3[2.84],N2(amino)-O2(carbonyl)[2.67]", "interBase_angle": 0.666, "planarity": 0.186, "simple_Shear": -0.157, "simple_Stretch": -0.300, "simple_Buckle": 0.664, "simple_Propeller": -0.055, "bp_simpleParams": [ -0.157, -0.300, 0.840, 0.664, -0.055, 1.541 ], "bp_params": [ -0.154, -0.301, 0.840, 0.665, -0.048, 1.541 ], "frame": { "rmsd": null, "origin": [ 222.832, 169.458, 202.634 ], "x_axis": [ -0.001, 0.216, 0.976 ], "y_axis": [ 0.944, -0.322, 0.072 ], "z_axis": [ 0.329, 0.922, -0.203 ], "quaternion": [ -0.344, 0.617, 0.470, 0.529 ] } }, { "index": 821, "nt1": "///A/1799", "nt2": "///A/2011", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.464, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.759, "chi2": -172.291, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 66.112, "C1C1_dist": 10.324, "N1N9_dist": 8.778, "C6C8_dist": 9.838, "CNNC_torsion": -1.357, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[3.11],N1(imino)-O2(carbonyl)[2.84],N2(amino)-O2(carbonyl)[3.04]", "interBase_angle": 5.250, "planarity": 0.138, "simple_Shear": -1.770, "simple_Stretch": -0.008, "simple_Buckle": -1.033, "simple_Propeller": 5.147, "bp_simpleParams": [ -1.770, -0.008, 0.445, -1.033, 5.147, 5.772 ], "bp_params": [ -1.742, -0.314, 0.445, -1.907, 4.891, 5.777 ], "frame": { "rmsd": null, "origin": [ 221.804, 173.273, 203.054 ], "x_axis": [ 0.428, -0.013, 0.904 ], "y_axis": [ 0.842, -0.359, -0.403 ], "z_axis": [ 0.330, 0.933, -0.143 ], "quaternion": [ -0.481, 0.695, 0.298, 0.444 ] } }, { "index": 822, "nt1": "///A/1800", "nt2": "///A/2009", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -155.935, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.025, "chi2": -120.971, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 52.504, "C1C1_dist": 10.753, "N1N9_dist": 8.992, "C6C8_dist": 9.907, "CNNC_torsion": 0.948, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 4.324, "planarity": 0.054, "simple_Shear": 0.162, "simple_Stretch": -0.111, "simple_Buckle": -2.119, "simple_Propeller": 3.769, "bp_simpleParams": [ 0.162, -0.111, 0.159, -2.119, 3.769, -0.033 ], "bp_params": [ 0.161, -0.113, 0.159, -2.077, 3.793, -0.033 ], "frame": { "rmsd": null, "origin": [ 222.582, 176.593, 204.091 ], "x_axis": [ 0.898, -0.331, 0.290 ], "y_axis": [ 0.262, -0.128, -0.957 ], "z_axis": [ 0.354, 0.935, -0.028 ], "quaternion": [ 0.660, -0.717, 0.024, -0.225 ] } }, { "index": 823, "nt1": "///A/1801", "nt2": "///A/2005", "bp": "G-C", "name": "--", "Saenger": "--", "LW": ".HW", "DSSR": ".M-W", "intra_chain": true, "chi1": -154.491, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 20.094, "chi2": -156.185, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 24.408, "C1C1_dist": 11.728, "N1N9_dist": 9.008, "C6C8_dist": 7.805, "CNNC_torsion": 48.784, "hbonds_num": 2, "hbonds_desc": "N7-N4(amino)[3.32],O6(carbonyl)-N4(amino)[2.91]", "interBase_angle": 53.663, "planarity": 0.695, "simple_Shear": -1.344, "simple_Stretch": 1.813, "simple_Buckle": 29.952, "simple_Propeller": -44.527, "bp_simpleParams": [ -1.344, 1.813, -1.735, 29.952, -44.527, -99.974 ], "bp_params": [ -1.803, 1.358, -1.735, 40.848, -34.801, -98.894 ], "frame": { "rmsd": null, "origin": [ 225.062, 179.146, 204.474 ], "x_axis": [ 0.372, -0.420, -0.828 ], "y_axis": [ -0.827, 0.254, -0.501 ], "z_axis": [ 0.421, 0.871, -0.253 ], "quaternion": [ 0.586, -0.585, 0.532, 0.174 ] } }, { "index": 824, "nt1": "///A/1801", "nt2": "///A/2008", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -154.491, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.458, "chi2": -162.363, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 60.068, "C1C1_dist": 10.749, "N1N9_dist": 9.159, "C6C8_dist": 10.171, "CNNC_torsion": -10.329, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.47],N1(imino)-N3[3.31],N2(amino)-O2(carbonyl)[3.16]", "interBase_angle": 23.710, "planarity": 0.350, "simple_Shear": -0.443, "simple_Stretch": 0.319, "simple_Buckle": 18.951, "simple_Propeller": -14.248, "bp_simpleParams": [ -0.443, 0.319, 0.033, 18.951, -14.248, 4.670 ], "bp_params": [ -0.458, 0.296, 0.033, 19.666, -13.244, 4.633 ], "frame": { "rmsd": null, "origin": [ 223.978, 178.771, 205.217 ], "x_axis": [ 0.766, -0.630, -0.127 ], "y_axis": [ -0.095, 0.085, -0.992 ], "z_axis": [ 0.636, 0.772, 0.006 ], "quaternion": [ 0.681, -0.647, 0.280, -0.197 ] } }, { "index": 825, "nt1": "///A/1802", "nt2": "///A/2006", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -173.977, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 105.965, "chi2": 160.795, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 5.183, "C1C1_dist": 10.455, "N1N9_dist": 9.514, "C6C8_dist": 10.382, "CNNC_torsion": -171.523, "hbonds_num": 1, "hbonds_desc": "N3-N6(amino)[3.59]", "interBase_angle": 27.131, "planarity": 0.346, "simple_Shear": 2.248, "simple_Stretch": 4.690, "simple_Buckle": -26.519, "simple_Propeller": 5.734, "bp_simpleParams": [ 2.248, 4.690, 0.284, -26.519, 5.734, -77.767 ], "bp_params": [ 3.557, -3.794, 0.284, 14.871, 22.692, -78.404 ], "frame": { "rmsd": null, "origin": [ 228.207, 186.515, 209.011 ], "x_axis": [ -0.479, 0.627, -0.614 ], "y_axis": [ 0.139, -0.637, -0.758 ], "z_axis": [ -0.867, -0.449, 0.217 ], "quaternion": [ 0.160, -0.485, -0.395, 0.764 ] } }, { "index": 826, "nt1": "///A/1803", "nt2": "///A/1819", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -179.382, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 15.666, "chi2": 179.043, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 76.775, "C1C1_dist": 10.149, "N1N9_dist": 8.578, "C6C8_dist": 8.524, "CNNC_torsion": 161.210, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O2(carbonyl)[3.65]", "interBase_angle": 32.984, "planarity": 0.360, "simple_Shear": -8.052, "simple_Stretch": 3.745, "simple_Buckle": 32.978, "simple_Propeller": 0.630, "bp_simpleParams": [ -8.052, 3.745, 1.477, 32.978, 0.630, -41.573 ], "bp_params": [ -7.413, -4.890, 1.477, 16.782, 28.396, -42.369 ], "frame": { "rmsd": null, "origin": [ 222.020, 190.861, 205.750 ], "x_axis": [ -0.368, 0.128, -0.921 ], "y_axis": [ 0.428, -0.856, -0.290 ], "z_axis": [ -0.825, -0.501, 0.261 ], "quaternion": [ -0.095, -0.554, -0.251, 0.788 ] } }, { "index": 827, "nt1": "///A/1805", "nt2": "///A/1817", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 170.880, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.125, "chi2": -177.669, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.492, "C1C1_dist": 10.687, "N1N9_dist": 8.883, "C6C8_dist": 9.782, "CNNC_torsion": -12.509, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 8.437, "planarity": 0.169, "simple_Shear": -0.149, "simple_Stretch": -0.242, "simple_Buckle": 7.505, "simple_Propeller": -3.856, "bp_simpleParams": [ -0.149, -0.242, 0.860, 7.505, -3.856, -0.583 ], "bp_params": [ -0.146, -0.244, 0.860, 7.549, -3.767, -0.582 ], "frame": { "rmsd": null, "origin": [ 214.603, 187.934, 203.324 ], "x_axis": [ 0.546, -0.829, -0.121 ], "y_axis": [ 0.259, 0.029, 0.966 ], "z_axis": [ -0.797, -0.559, 0.230 ], "quaternion": [ 0.672, 0.567, -0.251, -0.405 ] } }, { "index": 828, "nt1": "///A/1806", "nt2": "///A/1816", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.607, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.711, "chi2": 165.831, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 51.289, "C1C1_dist": 10.599, "N1N9_dist": 8.828, "C6C8_dist": 9.770, "CNNC_torsion": -8.724, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.81],O4(carbonyl)-N6(amino)[2.96]", "interBase_angle": 6.808, "planarity": 0.103, "simple_Shear": -0.019, "simple_Stretch": -0.157, "simple_Buckle": 0.893, "simple_Propeller": -6.749, "bp_simpleParams": [ -0.019, -0.157, 0.239, 0.893, -6.749, 0.296 ], "bp_params": [ -0.018, -0.158, 0.239, 0.943, -6.743, 0.296 ], "frame": { "rmsd": null, "origin": [ 211.822, 185.603, 202.014 ], "x_axis": [ 0.551, -0.612, 0.568 ], "y_axis": [ -0.226, 0.545, 0.807 ], "z_axis": [ -0.804, -0.573, 0.162 ], "quaternion": [ 0.751, 0.459, -0.456, -0.128 ] } }, { "index": 829, "nt1": "///A/1807", "nt2": "///A/1814", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -152.811, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 31.415, "chi2": -144.374, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 13.938, "C1C1_dist": 10.516, "N1N9_dist": 7.901, "C6C8_dist": 7.001, "CNNC_torsion": -154.062, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.93],N3(imino)-N7[3.48]", "interBase_angle": 14.256, "planarity": 0.235, "simple_Shear": 3.785, "simple_Stretch": 1.040, "simple_Buckle": 12.594, "simple_Propeller": -6.679, "bp_simpleParams": [ 3.785, 1.040, 0.426, 12.594, -6.679, -90.519 ], "bp_params": [ 3.732, -1.215, 0.426, 6.853, -12.500, -90.758 ], "frame": { "rmsd": null, "origin": [ 208.727, 182.839, 198.731 ], "x_axis": [ 0.014, 0.262, 0.965 ], "y_axis": [ -0.516, 0.828, -0.217 ], "z_axis": [ -0.856, -0.495, 0.147 ], "quaternion": [ 0.705, 0.099, -0.646, 0.276 ] } }, { "index": 830, "nt1": "///A/1808", "nt2": "///A/1813", "bp": "U+A", "name": "--", "Saenger": "--", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": -138.216, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 20.215, "chi2": -155.951, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 21.262, "C1C1_dist": 10.303, "N1N9_dist": 7.617, "C6C8_dist": 5.445, "CNNC_torsion": 145.929, "hbonds_num": 2, "hbonds_desc": "OP2-N6(amino)[2.56],O4(carbonyl)*N7[2.95]", "interBase_angle": 17.762, "planarity": 0.304, "simple_Shear": -8.981, "simple_Stretch": 1.376, "simple_Buckle": 12.289, "simple_Propeller": -12.824, "bp_simpleParams": [ -8.981, 1.376, -0.969, 12.289, -12.824, -177.234 ], "bp_params": [ -7.635, 4.925, -0.969, 5.975, -16.726, -177.259 ], "frame": { "rmsd": null, "origin": [ 204.752, 182.851, 200.904 ], "x_axis": [ -0.485, 0.667, 0.566 ], "y_axis": [ -0.617, 0.198, -0.762 ], "z_axis": [ -0.620, -0.719, 0.316 ], "quaternion": [ 0.507, -0.021, -0.585, 0.633 ] } }, { "index": 831, "nt1": "///A/1811", "nt2": "///A/2615", "bp": "C+C", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -116.611, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 20.915, "chi2": -165.053, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 26.561, "C1C1_dist": 10.966, "N1N9_dist": 8.310, "C6C8_dist": 8.421, "CNNC_torsion": -101.096, "hbonds_num": 2, "hbonds_desc": "N3-N4(amino)[2.88],N4(amino)-N3[2.57]", "interBase_angle": 33.821, "planarity": 0.465, "simple_Shear": -2.222, "simple_Stretch": -1.247, "simple_Buckle": 26.475, "simple_Propeller": 21.046, "bp_simpleParams": [ -2.222, -1.247, 0.062, 26.475, 21.046, 171.285 ], "bp_params": [ 1.681, -1.915, 0.062, -26.009, 21.620, 171.206 ], "frame": { "rmsd": null, "origin": [ 195.890, 173.663, 193.788 ], "x_axis": [ 0.272, -0.566, -0.778 ], "y_axis": [ -0.433, 0.650, -0.624 ], "z_axis": [ 0.859, 0.507, -0.068 ], "quaternion": [ 0.681, -0.415, 0.601, -0.049 ] } }, { "index": 832, "nt1": "///A/1812", "nt2": "///A/2636", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "intra_chain": true, "chi1": -103.036, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 152.214, "chi2": -142.361, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 107.573, "C1C1_dist": 5.621, "N1N9_dist": 7.495, "C6C8_dist": 9.957, "CNNC_torsion": -50.869, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.82],N3-N2(amino)[3.88]", "interBase_angle": 13.260, "planarity": 0.331, "simple_Shear": 0.236, "simple_Stretch": 8.724, "simple_Buckle": 12.991, "simple_Propeller": 2.659, "bp_simpleParams": [ 0.236, 8.724, -1.876, 12.991, 2.659, 168.079 ], "bp_params": [ 2.653, 8.314, -1.876, 13.217, -1.070, 168.000 ], "frame": { "rmsd": null, "origin": [ 202.428, 177.424, 192.845 ], "x_axis": [ -0.454, 0.400, -0.797 ], "y_axis": [ -0.258, 0.797, 0.547 ], "z_axis": [ 0.853, 0.454, -0.258 ], "quaternion": [ 0.521, 0.045, 0.792, 0.316 ] } }, { "index": 833, "nt1": "///A/1820", "nt2": "///A/1857", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -155.508, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 19.525, "chi2": -153.481, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 95.857, "C1C1_dist": 9.643, "N1N9_dist": 8.479, "C6C8_dist": 9.095, "CNNC_torsion": 53.339, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.82],N6(amino)-O2'(hydroxyl)[2.61],N6(amino)-N3[2.73]", "interBase_angle": 17.389, "planarity": 0.430, "simple_Shear": -6.578, "simple_Stretch": 1.820, "simple_Buckle": 8.240, "simple_Propeller": -15.313, "bp_simpleParams": [ -6.578, 1.820, -1.577, 8.240, -15.313, 6.400 ], "bp_params": [ -6.059, -3.140, -1.577, 16.446, -5.649, 6.342 ], "frame": { "rmsd": null, "origin": [ 222.304, 193.802, 199.560 ], "x_axis": [ -0.735, 0.029, -0.678 ], "y_axis": [ -0.431, 0.752, 0.499 ], "z_axis": [ 0.524, 0.659, -0.540 ], "quaternion": [ 0.345, -0.116, 0.870, 0.333 ] } }, { "index": 834, "nt1": "///A/1821", "nt2": "///A/1856", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.208, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 45.011, "chi2": -161.400, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 66.068, "C1C1_dist": 10.451, "N1N9_dist": 8.820, "C6C8_dist": 9.776, "CNNC_torsion": -0.953, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.96],N1(imino)-O2(carbonyl)[2.84],N2(amino)-O2(carbonyl)[3.26]", "interBase_angle": 5.188, "planarity": 0.075, "simple_Shear": -1.951, "simple_Stretch": -0.025, "simple_Buckle": -4.861, "simple_Propeller": 1.814, "bp_simpleParams": [ -1.951, -0.025, 0.022, -4.861, 1.814, 0.834 ], "bp_params": [ -1.911, -0.398, 0.022, -5.118, 0.850, 0.833 ], "frame": { "rmsd": null, "origin": [ 224.350, 197.016, 196.550 ], "x_axis": [ -0.905, 0.424, 0.028 ], "y_axis": [ 0.200, 0.368, 0.908 ], "z_axis": [ 0.375, 0.827, -0.418 ], "quaternion": [ 0.106, 0.190, 0.820, 0.529 ] } }, { "index": 835, "nt1": "///A/1822", "nt2": "///A/1855", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.217, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.591, "chi2": -167.654, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.271, "C1C1_dist": 10.645, "N1N9_dist": 8.931, "C6C8_dist": 9.886, "CNNC_torsion": 5.475, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 6.310, "planarity": 0.084, "simple_Shear": -0.179, "simple_Stretch": -0.130, "simple_Buckle": -3.248, "simple_Propeller": 5.409, "bp_simpleParams": [ -0.179, -0.130, -0.218, -3.248, 5.409, 0.813 ], "bp_params": [ -0.177, -0.133, -0.218, -3.324, 5.363, 0.814 ], "frame": { "rmsd": null, "origin": [ 224.489, 199.540, 193.543 ], "x_axis": [ -0.659, 0.525, 0.538 ], "y_axis": [ 0.671, 0.088, 0.736 ], "z_axis": [ 0.339, 0.847, -0.410 ], "quaternion": [ -0.068, 0.407, 0.734, 0.539 ] } }, { "index": 836, "nt1": "///A/1823", "nt2": "///A/1854", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.517, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 70.393, "chi2": -170.841, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 47.059, "C1C1_dist": 10.399, "N1N9_dist": 8.908, "C6C8_dist": 10.020, "CNNC_torsion": 9.841, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.80],O2(carbonyl)-N2(amino)[3.26],N3(imino)-O6(carbonyl)[3.30]", "interBase_angle": 10.616, "planarity": 0.144, "simple_Shear": 2.238, "simple_Stretch": 0.308, "simple_Buckle": 0.171, "simple_Propeller": 10.614, "bp_simpleParams": [ 2.238, 0.308, -0.402, 0.171, 10.614, 8.801 ], "bp_params": [ 2.250, -0.194, -0.402, 2.512, 10.314, 8.835 ], "frame": { "rmsd": null, "origin": [ 224.049, 202.679, 192.068 ], "x_axis": [ -0.074, 0.434, 0.898 ], "y_axis": [ 0.953, -0.235, 0.192 ], "z_axis": [ 0.295, 0.870, -0.396 ], "quaternion": [ -0.272, 0.624, 0.555, 0.478 ] } }, { "index": 837, "nt1": "///A/1824", "nt2": "///A/1853", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.740, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.113, "chi2": -168.289, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.050, "C1C1_dist": 10.537, "N1N9_dist": 8.872, "C6C8_dist": 9.848, "CNNC_torsion": 5.220, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 3.260, "planarity": 0.070, "simple_Shear": 0.201, "simple_Stretch": -0.173, "simple_Buckle": -0.536, "simple_Propeller": 3.216, "bp_simpleParams": [ 0.201, -0.173, -0.254, -0.536, 3.216, 1.196 ], "bp_params": [ 0.198, -0.176, -0.254, -0.484, 3.224, 1.197 ], "frame": { "rmsd": null, "origin": [ 222.769, 206.005, 190.660 ], "x_axis": [ 0.279, 0.137, 0.950 ], "y_axis": [ 0.933, -0.272, -0.235 ], "z_axis": [ 0.227, 0.952, -0.204 ], "quaternion": [ -0.448, 0.663, 0.404, 0.444 ] } }, { "index": 838, "nt1": "///A/1825", "nt2": "///A/1852", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.055, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 66.736, "chi2": -173.004, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 45.924, "C1C1_dist": 10.422, "N1N9_dist": 8.819, "C6C8_dist": 9.828, "CNNC_torsion": -1.526, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.83],O2(carbonyl)-N2(amino)[3.13],N3(imino)-O6(carbonyl)[3.06]", "interBase_angle": 3.896, "planarity": 0.097, "simple_Shear": 1.883, "simple_Stretch": 0.007, "simple_Buckle": 1.305, "simple_Propeller": 3.671, "bp_simpleParams": [ 1.883, 0.007, 0.284, 1.305, 3.671, 3.926 ], "bp_params": [ 1.852, -0.339, 0.284, 1.957, 3.368, 3.927 ], "frame": { "rmsd": null, "origin": [ 222.634, 209.560, 191.196 ], "x_axis": [ 0.766, -0.091, 0.637 ], "y_axis": [ 0.591, -0.291, -0.752 ], "z_axis": [ 0.254, 0.952, -0.169 ], "quaternion": [ 0.571, -0.746, -0.168, -0.299 ] } }, { "index": 839, "nt1": "///A/1826", "nt2": "///A/1851", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -149.200, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.810, "chi2": 179.591, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.974, "C1C1_dist": 10.505, "N1N9_dist": 8.869, "C6C8_dist": 9.853, "CNNC_torsion": 3.268, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.71],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.99]", "interBase_angle": 15.173, "planarity": 0.198, "simple_Shear": 0.179, "simple_Stretch": -0.086, "simple_Buckle": 14.282, "simple_Propeller": 5.121, "bp_simpleParams": [ 0.179, -0.086, -0.257, 14.282, 5.121, 2.968 ], "bp_params": [ 0.178, -0.089, -0.257, 14.369, 4.872, 2.947 ], "frame": { "rmsd": null, "origin": [ 222.551, 212.532, 192.602 ], "x_axis": [ 0.908, -0.339, 0.245 ], "y_axis": [ 0.229, -0.086, -0.969 ], "z_axis": [ 0.349, 0.937, -0.001 ], "quaternion": [ 0.675, -0.706, 0.039, -0.210 ] } }, { "index": 840, "nt1": "///A/1827", "nt2": "///A/1850", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -145.511, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 60.659, "chi2": -167.368, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.888, "C1C1_dist": 10.582, "N1N9_dist": 9.098, "C6C8_dist": 10.193, "CNNC_torsion": 0.316, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[3.35],O4(carbonyl)-N6(amino)[3.78]", "interBase_angle": 27.947, "planarity": 0.300, "simple_Shear": -0.047, "simple_Stretch": 0.512, "simple_Buckle": 27.057, "simple_Propeller": -6.997, "bp_simpleParams": [ -0.047, 0.512, -1.076, 27.057, -6.997, 9.823 ], "bp_params": [ -0.056, 0.511, -1.076, 27.206, -6.393, 9.565 ], "frame": { "rmsd": null, "origin": [ 224.482, 214.821, 193.874 ], "x_axis": [ 0.886, -0.384, -0.258 ], "y_axis": [ -0.177, 0.235, -0.956 ], "z_axis": [ 0.428, 0.893, 0.140 ], "quaternion": [ 0.752, -0.615, 0.228, -0.069 ] } }, { "index": 841, "nt1": "///A/1829", "nt2": "///A/1846", "bp": "C+G", "name": "rWC", "Saenger": "22-XXII", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -164.057, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 60.692, "chi2": 170.522, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 38.045, "C1C1_dist": 10.415, "N1N9_dist": 8.811, "C6C8_dist": 10.424, "CNNC_torsion": -173.773, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.78],O2(carbonyl)-N2(amino)[3.15],N3-N2(amino)[2.79]", "interBase_angle": 4.703, "planarity": 0.157, "simple_Shear": 3.996, "simple_Stretch": 1.465, "simple_Buckle": 1.239, "simple_Propeller": 4.537, "bp_simpleParams": [ 3.996, 1.465, 0.589, 1.239, 4.537, -156.861 ], "bp_params": [ -0.284, -4.246, 0.589, 3.643, -2.974, -156.857 ], "frame": { "rmsd": null, "origin": [ 219.078, 222.460, 198.182 ], "x_axis": [ 0.086, 0.456, -0.886 ], "y_axis": [ -0.690, 0.668, 0.277 ], "z_axis": [ 0.718, 0.587, 0.373 ], "quaternion": [ 0.729, -0.106, 0.550, 0.393 ] } }, { "index": 842, "nt1": "///A/1831", "nt2": "///A/1844", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": -138.302, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 24.285, "chi2": -136.990, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 6.411, "C1C1_dist": 11.568, "N1N9_dist": 8.814, "C6C8_dist": 6.889, "CNNC_torsion": -141.219, "hbonds_num": 1, "hbonds_desc": "N7-N6(amino)[3.10]", "interBase_angle": 4.104, "planarity": 0.232, "simple_Shear": -7.999, "simple_Stretch": 1.498, "simple_Buckle": 0.766, "simple_Propeller": -4.032, "bp_simpleParams": [ -7.999, 1.498, -1.362, 0.766, -4.032, 157.204 ], "bp_params": [ 5.839, -5.669, -1.362, 1.590, 3.784, 157.214 ], "frame": { "rmsd": null, "origin": [ 216.190, 220.601, 196.375 ], "x_axis": [ 0.261, -0.896, 0.359 ], "y_axis": [ -0.341, 0.262, 0.903 ], "z_axis": [ -0.903, -0.357, -0.237 ], "quaternion": [ 0.567, 0.556, -0.556, -0.245 ] } }, { "index": 843, "nt1": "///A/1832", "nt2": "///A/1843", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -149.385, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 10.516, "chi2": -146.209, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 96.786, "C1C1_dist": 9.499, "N1N9_dist": 8.320, "C6C8_dist": 8.735, "CNNC_torsion": 88.799, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[3.05],N6(amino)-O2'(hydroxyl)[2.67],N6(amino)-N3[3.07]", "interBase_angle": 6.627, "planarity": 0.303, "simple_Shear": -7.412, "simple_Stretch": 2.200, "simple_Buckle": -6.350, "simple_Propeller": -1.896, "bp_simpleParams": [ -7.412, 2.200, -1.400, -6.350, -1.896, -3.381 ], "bp_params": [ -6.517, -4.160, -1.400, -2.728, -6.040, -3.385 ], "frame": { "rmsd": null, "origin": [ 213.310, 218.825, 195.129 ], "x_axis": [ -0.429, 0.717, 0.549 ], "y_axis": [ 0.085, 0.637, -0.766 ], "z_axis": [ -0.899, -0.282, -0.334 ], "quaternion": [ -0.467, 0.259, 0.775, -0.338 ] } }, { "index": 844, "nt1": "///A/1833", "nt2": "///A/1842", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.256, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.004, "chi2": -162.877, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.620, "C1C1_dist": 10.808, "N1N9_dist": 8.945, "C6C8_dist": 9.825, "CNNC_torsion": -3.681, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.81]", "interBase_angle": 7.795, "planarity": 0.085, "simple_Shear": -0.219, "simple_Stretch": -0.159, "simple_Buckle": -7.330, "simple_Propeller": -2.650, "bp_simpleParams": [ -0.219, -0.159, -0.314, -7.330, -2.650, -1.082 ], "bp_params": [ -0.216, -0.162, -0.314, -7.288, -2.765, -1.080 ], "frame": { "rmsd": null, "origin": [ 209.183, 218.022, 193.668 ], "x_axis": [ -0.056, 0.953, -0.298 ], "y_axis": [ 0.482, -0.236, -0.844 ], "z_axis": [ -0.874, -0.191, -0.446 ], "quaternion": [ -0.256, 0.638, 0.563, -0.460 ] } }, { "index": 845, "nt1": "///A/1834", "nt2": "///A/1841", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.866, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.193, "chi2": -168.310, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.125, "C1C1_dist": 10.738, "N1N9_dist": 8.948, "C6C8_dist": 9.880, "CNNC_torsion": 0.035, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 0.250, "planarity": 0.039, "simple_Shear": 0.120, "simple_Stretch": -0.134, "simple_Buckle": -0.142, "simple_Propeller": 0.205, "bp_simpleParams": [ 0.120, -0.134, -0.176, -0.142, 0.205, 0.287 ], "bp_params": [ 0.119, -0.135, -0.176, -0.154, 0.197, 0.266 ], "frame": { "rmsd": null, "origin": [ 205.717, 219.521, 193.067 ], "x_axis": [ 0.180, 0.733, -0.656 ], "y_axis": [ 0.419, -0.661, -0.623 ], "z_axis": [ -0.890, -0.163, -0.426 ], "quaternion": [ -0.153, 0.753, 0.383, -0.514 ] } }, { "index": 846, "nt1": "///A/1835", "nt2": "///A/1840", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.020, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.993, "chi2": -169.497, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.567, "C1C1_dist": 10.536, "N1N9_dist": 8.884, "C6C8_dist": 9.884, "CNNC_torsion": 12.631, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.82],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[3.00]", "interBase_angle": 19.170, "planarity": 0.268, "simple_Shear": 0.289, "simple_Stretch": -0.126, "simple_Buckle": 2.292, "simple_Propeller": 19.033, "bp_simpleParams": [ 0.289, -0.126, 0.242, 2.292, 19.033, 3.793 ], "bp_params": [ 0.285, -0.133, 0.242, 2.762, 18.970, 3.844 ], "frame": { "rmsd": null, "origin": [ 202.155, 221.002, 192.252 ], "x_axis": [ 0.552, 0.359, -0.752 ], "y_axis": [ 0.260, -0.932, -0.254 ], "z_axis": [ -0.792, -0.055, -0.608 ], "quaternion": [ -0.057, 0.879, 0.176, -0.439 ] } }, { "index": 847, "nt1": "///A/1836", "nt2": "///A/1839", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": 178.270, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 88.139, "chi2": -171.010, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 7.860, "C1C1_dist": 9.622, "N1N9_dist": 8.276, "C6C8_dist": 8.387, "CNNC_torsion": -158.068, "hbonds_num": 2, "hbonds_desc": "N2(amino)-OP2[2.60],N2(amino)-N7[2.63]", "interBase_angle": 21.257, "planarity": 0.282, "simple_Shear": 7.964, "simple_Stretch": 3.266, "simple_Buckle": -1.606, "simple_Propeller": 21.196, "bp_simpleParams": [ 7.964, 3.266, 0.050, -1.606, 21.196, -25.805 ], "bp_params": [ 7.001, -5.008, 0.050, 17.107, 12.617, -25.681 ], "frame": { "rmsd": null, "origin": [ 198.913, 222.588, 191.376 ], "x_axis": [ 0.576, -0.585, -0.571 ], "y_axis": [ -0.420, -0.811, 0.408 ], "z_axis": [ -0.702, 0.005, -0.712 ], "quaternion": [ 0.114, 0.880, -0.285, -0.362 ] } }, { "index": 848, "nt1": "///A/1867", "nt2": "///A/1871", "bp": "C+G", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -102.695, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 33.572, "chi2": -178.017, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 28.968, "C1C1_dist": 12.237, "N1N9_dist": 9.720, "C6C8_dist": 9.022, "CNNC_torsion": 15.498, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O6(carbonyl)[2.56]", "interBase_angle": 48.598, "planarity": 0.602, "simple_Shear": -5.080, "simple_Stretch": 1.232, "simple_Buckle": -42.445, "simple_Propeller": -23.668, "bp_simpleParams": [ -5.080, 1.232, 0.660, -42.445, -23.668, -145.761 ], "bp_params": [ -1.568, 4.986, 0.660, -41.832, 24.735, -144.206 ], "frame": { "rmsd": null, "origin": [ 246.512, 198.879, 164.828 ], "x_axis": [ 0.631, -0.022, 0.775 ], "y_axis": [ 0.392, -0.853, -0.344 ], "z_axis": [ 0.669, 0.521, -0.530 ], "quaternion": [ -0.249, 0.868, 0.106, 0.416 ] } }, { "index": 849, "nt1": "///A/1867", "nt2": "///A/1927", "bp": "C-U", "name": "--", "Saenger": "--", "LW": "cHH", "DSSR": "cM-M", "intra_chain": true, "chi1": -102.695, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 20.297, "chi2": -176.849, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 46.685, "C1C1_dist": 11.358, "N1N9_dist": 8.983, "C6C8_dist": 7.136, "CNNC_torsion": -18.315, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O4(carbonyl)[3.24]", "interBase_angle": 45.130, "planarity": 0.621, "simple_Shear": 0.297, "simple_Stretch": 5.243, "simple_Buckle": -39.290, "simple_Propeller": 22.204, "bp_simpleParams": [ 0.297, 5.243, -0.807, -39.290, 22.204, -169.099 ], "bp_params": [ 1.836, 4.920, -0.807, -31.354, 32.460, -169.095 ], "frame": { "rmsd": null, "origin": [ 246.310, 199.414, 163.537 ], "x_axis": [ 0.697, -0.213, 0.684 ], "y_axis": [ 0.219, -0.846, -0.486 ], "z_axis": [ 0.682, 0.489, -0.543 ], "quaternion": [ -0.278, 0.878, 0.002, 0.389 ] } }, { "index": 850, "nt1": "///A/1872", "nt2": "///A/1926", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.532, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.605, "chi2": -163.034, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.175, "C1C1_dist": 10.541, "N1N9_dist": 8.799, "C6C8_dist": 9.723, "CNNC_torsion": 8.129, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 6.974, "planarity": 0.277, "simple_Shear": 0.206, "simple_Stretch": -0.313, "simple_Buckle": -6.943, "simple_Propeller": 0.652, "bp_simpleParams": [ 0.206, -0.313, -0.932, -6.943, 0.652, 0.604 ], "bp_params": [ 0.201, -0.317, -0.932, -6.932, 0.760, 0.603 ], "frame": { "rmsd": null, "origin": [ 247.444, 205.055, 164.749 ], "x_axis": [ 0.218, -0.695, -0.685 ], "y_axis": [ -0.943, 0.029, -0.330 ], "z_axis": [ 0.249, 0.719, -0.649 ], "quaternion": [ -0.387, 0.678, -0.604, -0.161 ] } }, { "index": 851, "nt1": "///A/1872", "nt2": "///A/1927", "bp": "C-U", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.532, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.016, "chi2": -176.849, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 73.147, "C1C1_dist": 8.120, "N1N9_dist": 6.739, "C6C8_dist": 7.992, "CNNC_torsion": -23.202, "hbonds_num": 2, "hbonds_desc": "N3-N3(imino)[3.52],N4(amino)-O4(carbonyl)[3.46]", "interBase_angle": 12.502, "planarity": 0.419, "simple_Shear": -2.479, "simple_Stretch": -1.883, "simple_Buckle": -11.661, "simple_Propeller": 4.508, "bp_simpleParams": [ -2.479, -1.883, 1.902, -11.661, 4.508, 14.675 ], "bp_params": [ -1.930, -2.443, 1.902, -12.419, 1.438, 14.591 ], "frame": { "rmsd": null, "origin": [ 246.452, 203.266, 164.460 ], "x_axis": [ 0.335, -0.684, -0.649 ], "y_axis": [ -0.897, -0.021, -0.441 ], "z_axis": [ 0.288, 0.730, -0.620 ], "quaternion": [ -0.416, 0.703, -0.562, -0.128 ] } }, { "index": 852, "nt1": "///A/1873", "nt2": "///A/1925", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -153.411, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.347, "chi2": -157.533, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.176, "C1C1_dist": 10.478, "N1N9_dist": 8.774, "C6C8_dist": 9.755, "CNNC_torsion": 4.557, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.77],O4(carbonyl)-N6(amino)[2.96]", "interBase_angle": 4.667, "planarity": 0.088, "simple_Shear": 0.021, "simple_Stretch": -0.184, "simple_Buckle": -1.797, "simple_Propeller": 4.307, "bp_simpleParams": [ 0.021, -0.184, -0.266, -1.797, 4.307, 1.944 ], "bp_params": [ 0.021, -0.184, -0.266, -1.813, 4.300, 1.945 ], "frame": { "rmsd": null, "origin": [ 249.403, 207.158, 162.746 ], "x_axis": [ -0.303, -0.629, -0.716 ], "y_axis": [ -0.924, 0.379, 0.059 ], "z_axis": [ 0.234, 0.679, -0.696 ], "quaternion": [ 0.308, -0.503, 0.771, 0.239 ] } }, { "index": 853, "nt1": "///A/1874", "nt2": "///A/1924", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -144.751, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 48.687, "chi2": -119.493, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 42.364, "C1C1_dist": 10.036, "N1N9_dist": 7.989, "C6C8_dist": 8.368, "CNNC_torsion": 28.897, "hbonds_num": 2, "hbonds_desc": "N1(imino)-N3[2.71],N2(amino)-O2(carbonyl)[3.29]", "interBase_angle": 31.451, "planarity": 0.687, "simple_Shear": -0.132, "simple_Stretch": -1.250, "simple_Buckle": 30.550, "simple_Propeller": 7.477, "bp_simpleParams": [ -0.132, -1.250, -1.507, 30.550, 7.477, -24.971 ], "bp_params": [ -0.130, -1.250, -1.507, 30.573, 7.381, -24.166 ], "frame": { "rmsd": null, "origin": [ 250.334, 210.000, 161.832 ], "x_axis": [ -0.557, -0.595, -0.580 ], "y_axis": [ -0.768, 0.634, 0.087 ], "z_axis": [ 0.317, 0.494, -0.810 ], "quaternion": [ 0.259, -0.393, 0.866, 0.168 ] } }, { "index": 854, "nt1": "///A/1874", "nt2": "///A/1925", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -144.751, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 45.762, "chi2": -157.533, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 62.078, "C1C1_dist": 10.875, "N1N9_dist": 9.167, "C6C8_dist": 9.866, "CNNC_torsion": 3.303, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N6(amino)[2.79],N1(imino)-N1[2.77]", "interBase_angle": 29.231, "planarity": 0.511, "simple_Shear": -1.670, "simple_Stretch": 0.205, "simple_Buckle": 24.706, "simple_Propeller": 15.622, "bp_simpleParams": [ -1.670, 0.205, 1.652, 24.706, 15.622, 1.825 ], "bp_params": [ -1.681, -0.060, 1.652, 22.030, 19.212, 1.818 ], "frame": { "rmsd": null, "origin": [ 249.982, 208.280, 162.546 ], "x_axis": [ -0.347, -0.704, -0.620 ], "y_axis": [ -0.858, 0.505, -0.093 ], "z_axis": [ 0.378, 0.499, -0.779 ], "quaternion": [ 0.308, -0.482, 0.811, 0.125 ] } }, { "index": 855, "nt1": "///A/1875", "nt2": "///A/1924", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -60.100, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 65.733, "chi2": -119.493, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 63.746, "C1C1_dist": 8.742, "N1N9_dist": 7.482, "C6C8_dist": 8.254, "CNNC_torsion": -4.723, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.62],N1(imino)-N3[2.48],N2(amino)-O2(carbonyl)[2.29]", "interBase_angle": 73.666, "planarity": 0.790, "simple_Shear": 0.088, "simple_Stretch": 0.108, "simple_Buckle": 71.977, "simple_Propeller": 15.684, "bp_simpleParams": [ 0.088, 0.108, 1.222, 71.977, 15.684, 4.734 ], "bp_params": [ 0.094, 0.103, 1.222, 72.974, 10.071, 3.829 ], "frame": { "rmsd": null, "origin": [ 250.272, 210.848, 160.675 ], "x_axis": [ -0.753, -0.463, -0.468 ], "y_axis": [ -0.479, 0.873, -0.092 ], "z_axis": [ 0.451, 0.155, -0.879 ], "quaternion": [ 0.245, -0.252, 0.936, 0.017 ] } }, { "index": 856, "nt1": "///A/1876", "nt2": "///A/1922", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM-W", "intra_chain": true, "chi1": -62.642, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 27.379, "chi2": -126.063, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 36.915, "C1C1_dist": 11.095, "N1N9_dist": 8.627, "C6C8_dist": 8.012, "CNNC_torsion": 31.711, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[3.10]", "interBase_angle": 60.297, "planarity": 0.898, "simple_Shear": -1.803, "simple_Stretch": 0.619, "simple_Buckle": 38.429, "simple_Propeller": -46.465, "bp_simpleParams": [ -1.803, 0.619, -1.994, 38.429, -46.465, -68.818 ], "bp_params": [ -1.906, 0.029, -1.994, 50.618, -32.766, -65.857 ], "frame": { "rmsd": null, "origin": [ 253.361, 211.945, 156.873 ], "x_axis": [ -0.928, -0.332, -0.169 ], "y_axis": [ -0.233, 0.871, -0.432 ], "z_axis": [ 0.291, -0.361, -0.886 ], "quaternion": [ 0.120, -0.147, 0.960, -0.207 ] } }, { "index": 857, "nt1": "///A/1877", "nt2": "///A/1922", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -131.471, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 26.448, "chi2": -126.063, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 57.760, "C1C1_dist": 10.645, "N1N9_dist": 8.586, "C6C8_dist": 8.896, "CNNC_torsion": -54.483, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.23],N6(amino)-N3[2.45]", "interBase_angle": 67.126, "planarity": 0.823, "simple_Shear": -1.347, "simple_Stretch": -0.024, "simple_Buckle": 37.717, "simple_Propeller": -55.528, "bp_simpleParams": [ -1.347, -0.024, 1.351, 37.717, -55.528, -34.719 ], "bp_params": [ -1.300, -0.353, 1.351, 49.119, -45.752, -34.742 ], "frame": { "rmsd": null, "origin": [ 253.584, 210.872, 155.519 ], "x_axis": [ -0.955, -0.102, -0.279 ], "y_axis": [ 0.033, 0.896, -0.442 ], "z_axis": [ 0.296, -0.432, -0.852 ], "quaternion": [ 0.149, -0.018, 0.962, -0.227 ] } }, { "index": 858, "nt1": "///A/1878", "nt2": "///A/1921", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -142.999, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.100, "chi2": 175.898, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.647, "C1C1_dist": 10.481, "N1N9_dist": 8.746, "C6C8_dist": 9.603, "CNNC_torsion": 20.578, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.87],N1(imino)-N3[2.94],N2(amino)-O2(carbonyl)[2.81]", "interBase_angle": 6.416, "planarity": 0.363, "simple_Shear": 0.044, "simple_Stretch": -0.562, "simple_Buckle": -4.090, "simple_Propeller": 4.943, "bp_simpleParams": [ 0.044, -0.562, -1.684, -4.090, 4.943, -4.083 ], "bp_params": [ 0.040, -0.562, -1.684, -4.051, 4.975, -4.084 ], "frame": { "rmsd": null, "origin": [ 252.086, 207.285, 149.454 ], "x_axis": [ -0.509, 0.763, 0.398 ], "y_axis": [ 0.704, 0.635, -0.317 ], "z_axis": [ -0.495, 0.119, -0.861 ], "quaternion": [ -0.258, 0.423, 0.867, -0.057 ] } }, { "index": 859, "nt1": "///A/1879", "nt2": "///A/1921", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -151.127, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 60.541, "chi2": 175.898, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 60.892, "C1C1_dist": 10.024, "N1N9_dist": 8.578, "C6C8_dist": 9.693, "CNNC_torsion": -1.871, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[3.00],N1(imino)-N3[2.85],N2(amino)-O2(carbonyl)[2.56]", "interBase_angle": 16.159, "planarity": 0.281, "simple_Shear": -0.359, "simple_Stretch": -0.322, "simple_Buckle": 10.617, "simple_Propeller": 12.182, "bp_simpleParams": [ -0.359, -0.322, 1.194, 10.617, 12.182, 10.495 ], "bp_params": [ -0.350, -0.331, 1.194, 10.281, 12.467, 10.515 ], "frame": { "rmsd": null, "origin": [ 251.466, 207.377, 148.168 ], "x_axis": [ -0.379, 0.833, 0.404 ], "y_axis": [ 0.699, 0.543, -0.465 ], "z_axis": [ -0.606, 0.106, -0.788 ], "quaternion": [ -0.307, 0.465, 0.823, -0.109 ] } }, { "index": 860, "nt1": "///A/1880", "nt2": "///A/1920", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -139.070, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 67.398, "chi2": -165.284, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.462, "C1C1_dist": 9.297, "N1N9_dist": 7.934, "C6C8_dist": 9.112, "CNNC_torsion": -2.090, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.33],N3(imino)*N1(imino)[2.66],O4(carbonyl)*O6(carbonyl)[2.98]", "unusual_base2base_hbonds": 2, "interBase_angle": 30.750, "planarity": 0.517, "simple_Shear": 0.830, "simple_Stretch": -0.489, "simple_Buckle": 28.163, "simple_Propeller": 12.345, "bp_simpleParams": [ 0.830, -0.489, 0.434, 28.163, 12.345, 13.444 ], "bp_params": [ 0.782, -0.563, 0.434, 29.237, 9.526, 13.061 ], "frame": { "rmsd": null, "origin": [ 249.029, 207.431, 146.525 ], "x_axis": [ 0.163, 0.970, 0.181 ], "y_axis": [ 0.710, 0.013, -0.705 ], "z_axis": [ -0.686, 0.243, -0.686 ], "quaternion": [ -0.350, 0.678, 0.620, -0.186 ] } }, { "index": 861, "nt1": "///A/1883", "nt2": "///A/1917", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -129.762, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 16.079, "chi2": -80.935, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 84.719, "C1C1_dist": 10.508, "N1N9_dist": 9.030, "C6C8_dist": 9.481, "CNNC_torsion": -52.567, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.71],N6(amino)*N2(amino)[2.41],N6(amino)-N3[2.67]", "unusual_base2base_hbonds": 1, "interBase_angle": 7.463, "planarity": 0.241, "simple_Shear": -6.385, "simple_Stretch": 1.997, "simple_Buckle": -5.694, "simple_Propeller": 4.824, "bp_simpleParams": [ -6.385, 1.997, 1.048, -5.694, 4.824, -8.059 ], "bp_params": [ -6.142, -2.651, 1.048, -7.463, -0.059, -8.042 ], "frame": { "rmsd": null, "origin": [ 242.769, 207.740, 135.706 ], "x_axis": [ 0.884, 0.188, -0.428 ], "y_axis": [ 0.022, -0.931, -0.364 ], "z_axis": [ -0.467, 0.312, -0.827 ], "quaternion": [ -0.177, 0.954, 0.055, -0.234 ] } }, { "index": 862, "nt1": "///A/1884", "nt2": "///A/1916", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.678, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 36.625, "chi2": -124.792, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 53.053, "C1C1_dist": 10.985, "N1N9_dist": 8.922, "C6C8_dist": 9.458, "CNNC_torsion": 1.460, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.65],N1(imino)-O2(carbonyl)[3.15]", "interBase_angle": 6.740, "planarity": 0.073, "simple_Shear": -1.442, "simple_Stretch": -0.324, "simple_Buckle": 4.205, "simple_Propeller": 5.267, "bp_simpleParams": [ -1.442, -0.324, 0.151, 4.205, 5.267, -17.045 ], "bp_params": [ -1.382, -0.524, 0.151, 3.420, 5.807, -17.059 ], "frame": { "rmsd": null, "origin": [ 243.526, 209.498, 132.983 ], "x_axis": [ 0.788, -0.469, -0.399 ], "y_axis": [ -0.537, -0.840, -0.075 ], "z_axis": [ -0.300, 0.273, -0.914 ], "quaternion": [ -0.092, 0.941, -0.267, -0.186 ] } }, { "index": 863, "nt1": "///A/1885", "nt2": "///A/1915", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.228, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.640, "chi2": -103.580, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 56.606, "C1C1_dist": 10.365, "N1N9_dist": 8.744, "C6C8_dist": 9.719, "CNNC_torsion": 3.464, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.93],N1-N3(imino)[2.75]", "interBase_angle": 2.980, "planarity": 0.081, "simple_Shear": 0.082, "simple_Stretch": -0.203, "simple_Buckle": 2.979, "simple_Propeller": -0.059, "bp_simpleParams": [ 0.082, -0.203, -0.252, 2.979, -0.059, 2.223 ], "bp_params": [ 0.079, -0.204, -0.252, 2.978, -0.099, 2.222 ], "frame": { "rmsd": null, "origin": [ 243.887, 210.113, 129.722 ], "x_axis": [ 0.197, -0.944, -0.263 ], "y_axis": [ -0.957, -0.244, 0.157 ], "z_axis": [ -0.212, 0.221, -0.952 ], "quaternion": [ -0.021, 0.773, -0.615, -0.154 ] } }, { "index": 864, "nt1": "///A/1886", "nt2": "///A/1914", "bp": "G-A", "name": "--", "Saenger": "--", "LW": ".SH", "DSSR": ".m-M", "intra_chain": true, "chi1": 173.810, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 96.892, "chi2": -148.962, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 25.172, "C1C1_dist": 10.144, "N1N9_dist": 9.036, "C6C8_dist": 9.815, "CNNC_torsion": 17.094, "hbonds_num": 4, "hbonds_desc": "O2'(hydroxyl)-N1[3.72],N2(amino)-N7[3.26],N2(amino)*N6(amino)[2.37],N3-N6(amino)[2.50]", "unusual_base2base_hbonds": 1, "interBase_angle": 5.523, "planarity": 0.160, "simple_Shear": 6.276, "simple_Stretch": 2.220, "simple_Buckle": -0.390, "simple_Propeller": 5.509, "bp_simpleParams": [ 6.276, 2.220, -0.833, -0.390, 5.509, 9.543 ], "bp_params": [ 6.246, -2.303, -0.833, 3.221, 4.486, 9.547 ], "frame": { "rmsd": null, "origin": [ 243.773, 208.845, 126.373 ], "x_axis": [ -0.596, -0.803, -0.000 ], "y_axis": [ -0.792, 0.587, 0.168 ], "z_axis": [ -0.135, 0.100, -0.986 ], "quaternion": [ -0.038, -0.448, 0.890, 0.076 ] } }, { "index": 865, "nt1": "///A/1887", "nt2": "///A/1913", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -146.802, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 103.001, "chi2": 169.227, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 27.953, "C1C1_dist": 7.041, "N1N9_dist": 6.410, "C6C8_dist": 6.370, "CNNC_torsion": -158.094, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N7[2.77],O2'(hydroxyl)-N6(amino)[3.24]", "interBase_angle": 35.135, "planarity": 0.554, "simple_Shear": 8.954, "simple_Stretch": 5.169, "simple_Buckle": 20.562, "simple_Propeller": 28.490, "bp_simpleParams": [ 8.954, 5.169, -0.908, 20.562, 28.490, -35.595 ], "bp_params": [ 6.446, -8.083, -0.908, 31.316, -15.930, -34.688 ], "frame": { "rmsd": null, "origin": [ 245.278, 208.401, 123.779 ], "x_axis": [ -0.939, -0.344, -0.001 ], "y_axis": [ -0.338, 0.922, -0.187 ], "z_axis": [ 0.065, -0.175, -0.982 ], "quaternion": [ 0.017, -0.174, 0.980, -0.092 ] } }, { "index": 866, "nt1": "///A/1888", "nt2": "///A/1912", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -174.848, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 9.430, "chi2": -157.773, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 89.725, "C1C1_dist": 9.093, "N1N9_dist": 7.787, "C6C8_dist": 8.137, "CNNC_torsion": 139.796, "hbonds_num": 5, "hbonds_desc": "OP2-N2(amino)[2.69],N7-N2(amino)[2.57],N6(amino)-O3'[3.39],N6(amino)-O2'(hydroxyl)[2.23],N6(amino)-N3[3.21]", "interBase_angle": 24.999, "planarity": 0.332, "simple_Shear": -7.673, "simple_Stretch": 1.994, "simple_Buckle": 13.868, "simple_Propeller": 20.800, "bp_simpleParams": [ -7.673, 1.994, -1.292, 13.868, 20.800, -14.010 ], "bp_params": [ -6.258, -4.868, -1.292, -8.106, 23.648, -14.277 ], "frame": { "rmsd": null, "origin": [ 244.697, 204.573, 120.376 ], "x_axis": [ -0.856, -0.354, 0.377 ], "y_axis": [ -0.490, 0.787, -0.374 ], "z_axis": [ -0.164, -0.505, -0.847 ], "quaternion": [ -0.145, -0.226, 0.934, -0.235 ] } }, { "index": 867, "nt1": "///A/1889", "nt2": "///A/1912", "bp": "G-G", "name": "~Sheared", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -179.113, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 9.743, "chi2": -157.773, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 101.643, "C1C1_dist": 9.074, "N1N9_dist": 8.006, "C6C8_dist": 8.513, "CNNC_torsion": 76.114, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)*N3[3.27]", "interBase_angle": 41.438, "planarity": 0.554, "simple_Shear": -7.661, "simple_Stretch": 2.318, "simple_Buckle": 32.226, "simple_Propeller": 26.050, "bp_simpleParams": [ -7.661, 2.318, 0.579, 32.226, 26.050, 15.664 ], "bp_params": [ -6.593, -4.538, 0.579, -0.035, 41.438, 16.732 ], "frame": { "rmsd": null, "origin": [ 244.231, 203.159, 119.684 ], "x_axis": [ -0.923, -0.054, 0.381 ], "y_axis": [ -0.244, 0.847, -0.472 ], "z_axis": [ -0.297, -0.529, -0.795 ], "quaternion": [ -0.179, -0.079, 0.944, -0.265 ] } }, { "index": 868, "nt1": "///A/1890", "nt2": "///A/1911", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.535, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 83.496, "chi2": -174.570, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 61.779, "C1C1_dist": 7.194, "N1N9_dist": 6.328, "C6C8_dist": 7.845, "CNNC_torsion": 3.296, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)*O2(carbonyl)[2.68]", "interBase_angle": 56.089, "planarity": 0.517, "simple_Shear": 1.248, "simple_Stretch": -0.607, "simple_Buckle": 52.727, "simple_Propeller": 19.127, "bp_simpleParams": [ 1.248, -0.607, -0.089, 52.727, 19.127, 38.943 ], "bp_params": [ 1.129, -0.807, -0.089, 55.376, 8.919, 34.888 ], "frame": { "rmsd": null, "origin": [ 243.354, 203.380, 117.802 ], "x_axis": [ -0.532, 0.789, -0.309 ], "y_axis": [ 0.752, 0.271, -0.602 ], "z_axis": [ -0.391, -0.552, -0.736 ], "quaternion": [ -0.026, 0.483, 0.797, -0.362 ] } }, { "index": 869, "nt1": "///A/2005", "nt2": "///A/2007", "bp": "C+A", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -156.185, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 92.505, "chi2": -169.954, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 21.527, "C1C1_dist": 9.647, "N1N9_dist": 8.398, "C6C8_dist": 8.608, "CNNC_torsion": -21.708, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.84]", "interBase_angle": 39.453, "planarity": 0.556, "simple_Shear": 0.082, "simple_Stretch": 3.771, "simple_Buckle": 19.462, "simple_Propeller": -34.319, "bp_simpleParams": [ 0.082, 3.771, 0.776, 19.462, -34.319, -58.459 ], "bp_params": [ 3.771, 0.077, 0.776, -33.659, -20.581, -57.160 ], "frame": { "rmsd": null, "origin": [ 226.505, 180.609, 205.296 ], "x_axis": [ -0.015, -0.504, -0.864 ], "y_axis": [ 0.875, -0.424, 0.232 ], "z_axis": [ -0.483, -0.753, 0.447 ], "quaternion": [ 0.502, 0.490, 0.190, -0.687 ] } }, { "index": 870, "nt1": "///A/2021", "nt2": "///A/2025", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -110.912, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 59.163, "chi2": -147.198, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 88.983, "C1C1_dist": 9.826, "N1N9_dist": 9.104, "C6C8_dist": 10.786, "CNNC_torsion": -45.135, "hbonds_num": 3, "hbonds_desc": "N1(imino)-O2(carbonyl)[3.37],N2(amino)-O2'(hydroxyl)[3.17],N2(amino)-O2(carbonyl)[3.24]", "interBase_angle": 51.370, "planarity": 0.682, "simple_Shear": -2.866, "simple_Stretch": 2.328, "simple_Buckle": -35.869, "simple_Propeller": -36.773, "bp_simpleParams": [ -2.866, 2.328, 1.358, -35.869, -36.773, 46.211 ], "bp_params": [ -3.391, 1.460, 1.358, -24.469, -45.168, 48.715 ], "frame": { "rmsd": null, "origin": [ 204.159, 140.794, 216.688 ], "x_axis": [ 0.546, -0.721, 0.426 ], "y_axis": [ 0.221, 0.614, 0.758 ], "z_axis": [ -0.808, -0.320, 0.495 ], "quaternion": [ 0.815, 0.331, -0.379, -0.289 ] } }, { "index": 871, "nt1": "///A/2042", "nt2": "///A/2642", "bp": "A+U", "name": "rWC", "Saenger": "21-XXI", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -160.990, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 27.782, "chi2": -136.316, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 42.793, "C1C1_dist": 11.208, "N1N9_dist": 8.987, "C6C8_dist": 9.885, "CNNC_torsion": -171.501, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.06],N1-N3(imino)[2.96]", "interBase_angle": 7.226, "planarity": 0.184, "simple_Shear": 1.199, "simple_Stretch": 0.071, "simple_Buckle": -1.284, "simple_Propeller": 7.111, "bp_simpleParams": [ 1.199, 0.071, -0.757, -1.284, 7.111, 165.023 ], "bp_params": [ 0.072, 1.199, -0.757, -7.214, -0.427, 164.993 ], "frame": { "rmsd": null, "origin": [ 170.610, 164.414, 207.751 ], "x_axis": [ 0.900, -0.400, -0.172 ], "y_axis": [ -0.404, -0.915, 0.010 ], "z_axis": [ -0.161, 0.061, -0.985 ], "quaternion": [ -0.013, 0.975, -0.206, -0.086 ] } }, { "index": 872, "nt1": "///A/2048", "nt2": "///A/2064", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.404, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 27.074, "chi2": -94.932, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 59.061, "C1C1_dist": 13.114, "N1N9_dist": 11.063, "C6C8_dist": 11.418, "CNNC_torsion": -6.202, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N1(imino)[3.56]", "interBase_angle": 9.337, "planarity": 0.140, "simple_Shear": -3.205, "simple_Stretch": 2.229, "simple_Buckle": -9.227, "simple_Propeller": -1.434, "bp_simpleParams": [ -3.205, 2.229, -0.066, -9.227, -1.434, -25.569 ], "bp_params": [ -3.762, 1.045, -0.066, -8.237, -4.397, -25.523 ], "frame": { "rmsd": null, "origin": [ 159.888, 152.121, 184.343 ], "x_axis": [ 0.960, 0.257, 0.110 ], "y_axis": [ -0.276, 0.809, 0.519 ], "z_axis": [ 0.045, -0.529, 0.848 ], "quaternion": [ 0.951, 0.275, -0.017, 0.140 ] } }, { "index": 873, "nt1": "///A/2049", "nt2": "///A/2063", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.977, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.610, "chi2": -130.124, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 46.214, "C1C1_dist": 11.101, "N1N9_dist": 9.115, "C6C8_dist": 9.859, "CNNC_torsion": 8.780, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.85],N1-N3(imino)[2.99]", "interBase_angle": 3.665, "planarity": 0.141, "simple_Shear": 0.167, "simple_Stretch": -0.067, "simple_Buckle": 0.499, "simple_Propeller": 3.631, "bp_simpleParams": [ 0.167, -0.067, -0.595, 0.499, 3.631, -8.520 ], "bp_params": [ 0.165, -0.070, -0.595, 0.574, 3.620, -8.524 ], "frame": { "rmsd": null, "origin": [ 162.713, 150.235, 187.131 ], "x_axis": [ 0.606, 0.725, 0.328 ], "y_axis": [ -0.788, 0.489, 0.374 ], "z_axis": [ 0.111, -0.485, 0.868 ], "quaternion": [ 0.861, 0.249, -0.063, 0.440 ] } }, { "index": 874, "nt1": "///A/2052", "nt2": "///A/2069", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.015, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.279, "chi2": -166.733, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.296, "C1C1_dist": 10.700, "N1N9_dist": 8.917, "C6C8_dist": 9.848, "CNNC_torsion": -1.650, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.98],N1-N3(imino)[2.88]", "interBase_angle": 1.972, "planarity": 0.026, "simple_Shear": 0.039, "simple_Stretch": -0.082, "simple_Buckle": -1.898, "simple_Propeller": 0.535, "bp_simpleParams": [ 0.039, -0.082, 0.005, -1.898, 0.535, -0.428 ], "bp_params": [ 0.038, -0.083, 0.005, -1.893, 0.552, -0.428 ], "frame": { "rmsd": null, "origin": [ 164.938, 134.441, 184.941 ], "x_axis": [ -0.776, 0.272, -0.569 ], "y_axis": [ -0.089, 0.846, 0.526 ], "z_axis": [ 0.624, 0.459, -0.632 ], "quaternion": [ 0.331, 0.051, 0.902, 0.273 ] } }, { "index": 875, "nt1": "///A/2053", "nt2": "///A/2068", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.554, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.805, "chi2": -171.640, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.102, "C1C1_dist": 10.610, "N1N9_dist": 8.915, "C6C8_dist": 9.887, "CNNC_torsion": -2.371, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.98]", "interBase_angle": 2.063, "planarity": 0.068, "simple_Shear": 0.180, "simple_Stretch": -0.126, "simple_Buckle": 1.704, "simple_Propeller": 1.163, "bp_simpleParams": [ 0.180, -0.126, 0.207, 1.704, 1.163, 1.926 ], "bp_params": [ 0.178, -0.128, 0.207, 1.720, 1.139, 1.926 ], "frame": { "rmsd": null, "origin": [ 166.594, 134.779, 181.811 ], "x_axis": [ -0.695, 0.705, -0.145 ], "y_axis": [ 0.364, 0.518, 0.774 ], "z_axis": [ 0.620, 0.485, -0.617 ], "quaternion": [ 0.227, 0.318, 0.841, 0.374 ] } }, { "index": 876, "nt1": "///A/2054", "nt2": "///A/2067", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.162, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.426, "chi2": -168.842, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.125, "C1C1_dist": 10.633, "N1N9_dist": 8.851, "C6C8_dist": 9.760, "CNNC_torsion": -7.539, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.88]", "interBase_angle": 2.432, "planarity": 0.175, "simple_Shear": 0.192, "simple_Stretch": -0.277, "simple_Buckle": -0.418, "simple_Propeller": 2.396, "bp_simpleParams": [ 0.192, -0.277, 0.762, -0.418, 2.396, -0.224 ], "bp_params": [ 0.188, -0.280, 0.762, -0.383, 2.402, -0.224 ], "frame": { "rmsd": null, "origin": [ 167.994, 135.649, 178.421 ], "x_axis": [ -0.442, 0.834, 0.330 ], "y_axis": [ 0.661, 0.054, 0.749 ], "z_axis": [ 0.607, 0.549, -0.575 ], "quaternion": [ 0.096, 0.519, 0.720, 0.451 ] } }, { "index": 877, "nt1": "///A/2055", "nt2": "///A/2066", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.889, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.934, "chi2": -166.375, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.283, "C1C1_dist": 10.696, "N1N9_dist": 8.886, "C6C8_dist": 9.756, "CNNC_torsion": -8.872, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.90],O4(carbonyl)-N6(amino)[2.94]", "interBase_angle": 2.473, "planarity": 0.192, "simple_Shear": 0.019, "simple_Stretch": -0.208, "simple_Buckle": 1.519, "simple_Propeller": 1.951, "bp_simpleParams": [ 0.019, -0.208, 0.838, 1.519, 1.951, -2.152 ], "bp_params": [ 0.019, -0.208, 0.838, 1.513, 1.955, -2.152 ], "frame": { "rmsd": null, "origin": [ 168.748, 137.765, 175.772 ], "x_axis": [ -0.068, 0.708, 0.703 ], "y_axis": [ 0.828, -0.353, 0.435 ], "z_axis": [ 0.557, 0.612, -0.562 ], "quaternion": [ -0.065, 0.680, 0.565, 0.463 ] } }, { "index": 878, "nt1": "///A/2056", "nt2": "///A/2065", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.506, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.432, "chi2": -165.104, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.642, "C1C1_dist": 10.842, "N1N9_dist": 8.986, "C6C8_dist": 9.871, "CNNC_torsion": -3.546, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.95],N2(amino)-O2(carbonyl)[2.85]", "interBase_angle": 12.762, "planarity": 0.147, "simple_Shear": -0.205, "simple_Stretch": -0.111, "simple_Buckle": -10.696, "simple_Propeller": -6.962, "bp_simpleParams": [ -0.205, -0.111, -0.586, -10.696, -6.962, -0.255 ], "bp_params": [ -0.203, -0.113, -0.586, -10.615, -7.086, -0.254 ], "frame": { "rmsd": null, "origin": [ 168.887, 141.667, 174.784 ], "x_axis": [ 0.299, 0.186, 0.936 ], "y_axis": [ 0.850, -0.498, -0.172 ], "z_axis": [ 0.434, 0.847, -0.307 ], "quaternion": [ -0.351, 0.725, 0.357, 0.472 ] } }, { "index": 879, "nt1": "///A/2057", "nt2": "///A/2062", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -159.062, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 27.201, "chi2": -104.280, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 17.689, "C1C1_dist": 10.260, "N1N9_dist": 7.632, "C6C8_dist": 6.566, "CNNC_torsion": 165.731, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.07],N3(imino)-N7[3.15]", "interBase_angle": 4.131, "planarity": 0.133, "simple_Shear": 3.751, "simple_Stretch": 1.265, "simple_Buckle": -3.941, "simple_Propeller": -1.239, "bp_simpleParams": [ 3.751, 1.265, -0.567, -3.941, -1.239, -98.873 ], "bp_params": [ 3.773, -1.198, -0.567, -3.910, 1.332, -98.844 ], "frame": { "rmsd": null, "origin": [ 168.067, 145.648, 174.214 ], "x_axis": [ 0.852, -0.513, -0.105 ], "y_axis": [ -0.240, -0.202, -0.950 ], "z_axis": [ 0.466, 0.834, -0.295 ], "quaternion": [ 0.582, -0.766, 0.246, -0.118 ] } }, { "index": 880, "nt1": "///A/2072", "nt2": "///A/2654", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 176.815, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.477, "chi2": -174.389, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.079, "C1C1_dist": 10.924, "N1N9_dist": 9.016, "C6C8_dist": 9.881, "CNNC_torsion": 0.475, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.82],N3-N1(imino)[2.93],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 7.230, "planarity": 0.093, "simple_Shear": 0.157, "simple_Stretch": -0.117, "simple_Buckle": 7.229, "simple_Propeller": 0.135, "bp_simpleParams": [ 0.157, -0.117, -0.434, 7.229, 0.135, -1.327 ], "bp_params": [ 0.156, -0.119, -0.434, 7.230, 0.057, -1.325 ], "frame": { "rmsd": null, "origin": [ 157.079, 131.968, 204.999 ], "x_axis": [ 0.808, -0.433, 0.400 ], "y_axis": [ 0.283, -0.309, -0.908 ], "z_axis": [ 0.517, 0.847, -0.127 ], "quaternion": [ 0.586, -0.749, 0.050, -0.306 ] } }, { "index": 881, "nt1": "///A/2073", "nt2": "///A/2653", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.485, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.842, "chi2": -174.521, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.314, "C1C1_dist": 10.690, "N1N9_dist": 8.898, "C6C8_dist": 9.813, "CNNC_torsion": -0.815, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.88]", "interBase_angle": 3.433, "planarity": 0.059, "simple_Shear": 0.169, "simple_Stretch": -0.189, "simple_Buckle": 2.593, "simple_Propeller": 2.250, "bp_simpleParams": [ 0.169, -0.189, 0.061, 2.593, 2.250, -0.396 ], "bp_params": [ 0.167, -0.191, 0.061, 2.621, 2.218, -0.396 ], "frame": { "rmsd": null, "origin": [ 158.385, 135.427, 206.427 ], "x_axis": [ 0.729, -0.648, -0.218 ], "y_axis": [ -0.324, -0.048, -0.945 ], "z_axis": [ 0.602, 0.760, -0.245 ], "quaternion": [ 0.599, -0.711, 0.342, -0.135 ] } }, { "index": 882, "nt1": "///A/2074", "nt2": "///A/2652", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.557, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.305, "chi2": 177.612, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.207, "C1C1_dist": 10.793, "N1N9_dist": 8.969, "C6C8_dist": 9.856, "CNNC_torsion": 3.024, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.83],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 4.926, "planarity": 0.075, "simple_Shear": 0.202, "simple_Stretch": -0.151, "simple_Buckle": 3.338, "simple_Propeller": 3.623, "bp_simpleParams": [ 0.202, -0.151, 0.003, 3.338, 3.623, -1.427 ], "bp_params": [ 0.200, -0.154, 0.003, 3.393, 3.571, -1.427 ], "frame": { "rmsd": null, "origin": [ 161.564, 137.395, 207.219 ], "x_axis": [ 0.406, -0.573, -0.712 ], "y_axis": [ -0.637, 0.381, -0.670 ], "z_axis": [ 0.655, 0.726, -0.211 ], "quaternion": [ 0.628, -0.556, 0.544, 0.025 ] } }, { "index": 883, "nt1": "///A/2075", "nt2": "///A/2651", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 176.428, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.329, "chi2": -165.642, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.997, "C1C1_dist": 10.601, "N1N9_dist": 8.837, "C6C8_dist": 9.752, "CNNC_torsion": -6.786, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 8.404, "planarity": 0.189, "simple_Shear": -0.246, "simple_Stretch": -0.286, "simple_Buckle": 7.775, "simple_Propeller": 3.191, "bp_simpleParams": [ -0.246, -0.286, 0.992, 7.775, 3.191, 0.449 ], "bp_params": [ -0.240, -0.291, 0.992, 7.716, 3.330, 0.449 ], "frame": { "rmsd": null, "origin": [ 165.709, 138.478, 207.739 ], "x_axis": [ 0.215, -0.368, -0.905 ], "y_axis": [ -0.795, 0.472, -0.381 ], "z_axis": [ 0.567, 0.801, -0.191 ], "quaternion": [ 0.612, -0.483, 0.602, 0.175 ] } }, { "index": 884, "nt1": "///A/2076", "nt2": "///A/2650", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.437, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.447, "chi2": 176.277, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.945, "C1C1_dist": 10.720, "N1N9_dist": 8.913, "C6C8_dist": 9.824, "CNNC_torsion": -6.349, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 5.123, "planarity": 0.133, "simple_Shear": 0.167, "simple_Stretch": -0.185, "simple_Buckle": 4.798, "simple_Propeller": -1.795, "bp_simpleParams": [ 0.167, -0.185, 0.371, 4.798, -1.795, -0.523 ], "bp_params": [ 0.165, -0.187, 0.371, 4.777, -1.850, -0.522 ], "frame": { "rmsd": null, "origin": [ 169.245, 139.988, 207.437 ], "x_axis": [ -0.322, -0.025, -0.946 ], "y_axis": [ -0.740, 0.631, 0.235 ], "z_axis": [ 0.591, 0.776, -0.222 ], "quaternion": [ 0.521, -0.259, 0.737, 0.343 ] } }, { "index": 885, "nt1": "///A/2076", "nt2": "///A/2848", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -170.437, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 119.603, "chi2": -178.120, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 31.365, "C1C1_dist": 10.212, "N1N9_dist": 9.717, "C6C8_dist": 10.957, "CNNC_torsion": -36.858, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.10],O2(carbonyl)-N6(amino)[3.57]", "interBase_angle": 25.156, "planarity": 0.335, "simple_Shear": 6.095, "simple_Stretch": 4.282, "simple_Buckle": 18.494, "simple_Propeller": -17.053, "bp_simpleParams": [ 6.095, 4.282, 0.548, 18.494, -17.053, 48.346 ], "bp_params": [ 7.402, -0.843, 0.548, 2.531, -25.029, 49.374 ], "frame": { "rmsd": null, "origin": [ 169.330, 141.785, 210.613 ], "x_axis": [ -0.116, -0.448, -0.886 ], "y_axis": [ -0.793, 0.579, -0.189 ], "z_axis": [ 0.598, 0.681, -0.423 ], "quaternion": [ 0.510, -0.426, 0.728, 0.169 ] } }, { "index": 886, "nt1": "///A/2077", "nt2": "///A/2649", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.909, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.301, "chi2": -151.049, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.767, "C1C1_dist": 10.511, "N1N9_dist": 8.865, "C6C8_dist": 9.855, "CNNC_torsion": -1.301, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.97],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.72]", "interBase_angle": 6.702, "planarity": 0.127, "simple_Shear": -0.264, "simple_Stretch": -0.145, "simple_Buckle": -5.632, "simple_Propeller": 3.633, "bp_simpleParams": [ -0.264, -0.145, 0.171, -5.632, 3.633, 2.765 ], "bp_params": [ -0.260, -0.151, 0.171, -5.713, 3.505, 2.763 ], "frame": { "rmsd": null, "origin": [ 172.275, 141.302, 205.841 ], "x_axis": [ -0.790, 0.064, -0.610 ], "y_axis": [ -0.458, 0.601, 0.655 ], "z_axis": [ 0.408, 0.797, -0.446 ], "quaternion": [ 0.302, -0.117, 0.842, 0.431 ] } }, { "index": 887, "nt1": "///A/2078", "nt2": "///A/2648", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 176.654, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.585, "chi2": -164.663, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.818, "C1C1_dist": 10.763, "N1N9_dist": 8.935, "C6C8_dist": 9.758, "CNNC_torsion": -2.961, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.92],N1-N3(imino)[2.94]", "interBase_angle": 22.213, "planarity": 0.250, "simple_Shear": 0.062, "simple_Stretch": -0.085, "simple_Buckle": -18.347, "simple_Propeller": -12.523, "bp_simpleParams": [ 0.062, -0.085, -0.972, -18.347, -12.523, -2.414 ], "bp_params": [ 0.060, -0.086, -0.972, -18.622, -12.110, -2.396 ], "frame": { "rmsd": null, "origin": [ 173.963, 143.132, 202.359 ], "x_axis": [ -0.989, 0.147, -0.007 ], "y_axis": [ 0.080, 0.577, 0.813 ], "z_axis": [ 0.124, 0.803, -0.583 ], "quaternion": [ 0.037, 0.064, 0.887, 0.455 ] } }, { "index": 888, "nt1": "///A/2079", "nt2": "///A/2647", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.351, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.361, "chi2": -159.016, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.689, "C1C1_dist": 10.692, "N1N9_dist": 8.917, "C6C8_dist": 9.816, "CNNC_torsion": -1.722, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.84],N3-N1(imino)[2.95],N4(amino)-O6(carbonyl)[2.97]", "interBase_angle": 18.711, "planarity": 0.276, "simple_Shear": 0.178, "simple_Stretch": -0.065, "simple_Buckle": -18.701, "simple_Propeller": 0.616, "bp_simpleParams": [ 0.178, -0.065, -0.096, -18.701, 0.616, -0.330 ], "bp_params": [ 0.177, -0.067, -0.096, -18.692, 0.843, -0.325 ], "frame": { "rmsd": null, "origin": [ 174.491, 145.283, 199.321 ], "x_axis": [ -0.775, 0.399, 0.490 ], "y_axis": [ 0.608, 0.259, 0.750 ], "z_axis": [ 0.173, 0.879, -0.444 ], "quaternion": [ -0.101, 0.320, 0.787, 0.518 ] } }, { "index": 889, "nt1": "///A/2081", "nt2": "///A/2646", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.106, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.728, "chi2": -163.110, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.472, "C1C1_dist": 10.588, "N1N9_dist": 8.881, "C6C8_dist": 9.827, "CNNC_torsion": 3.937, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 9.520, "planarity": 0.128, "simple_Shear": -0.194, "simple_Stretch": -0.181, "simple_Buckle": -9.495, "simple_Propeller": -0.692, "bp_simpleParams": [ -0.194, -0.181, -0.643, -9.495, -0.692, 0.915 ], "bp_params": [ -0.191, -0.184, -0.643, -9.484, -0.827, 0.912 ], "frame": { "rmsd": null, "origin": [ 174.319, 146.659, 194.971 ], "x_axis": [ -0.018, 0.343, 0.939 ], "y_axis": [ 1.000, 0.023, 0.011 ], "z_axis": [ -0.018, 0.939, -0.343 ], "quaternion": [ -0.407, 0.570, 0.588, 0.404 ] } }, { "index": 890, "nt1": "///A/2082", "nt2": "///A/2645", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.957, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.106, "chi2": -164.565, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.891, "C1C1_dist": 10.725, "N1N9_dist": 8.930, "C6C8_dist": 9.843, "CNNC_torsion": 3.573, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.89],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 2.080, "planarity": 0.070, "simple_Shear": -0.160, "simple_Stretch": -0.175, "simple_Buckle": -0.284, "simple_Propeller": 2.061, "bp_simpleParams": [ -0.160, -0.175, -0.315, -0.284, 2.061, -0.883 ], "bp_params": [ -0.158, -0.177, -0.315, -0.308, 2.057, -0.883 ], "frame": { "rmsd": null, "origin": [ 172.649, 149.470, 193.999 ], "x_axis": [ 0.484, 0.236, 0.843 ], "y_axis": [ 0.875, -0.161, -0.457 ], "z_axis": [ 0.028, 0.958, -0.285 ], "quaternion": [ 0.509, -0.694, -0.400, -0.313 ] } }, { "index": 891, "nt1": "///A/2083", "nt2": "///A/2644", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -142.542, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.468, "chi2": -172.288, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.354, "C1C1_dist": 10.800, "N1N9_dist": 8.980, "C6C8_dist": 9.845, "CNNC_torsion": -8.528, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.94],N1-N3(imino)[2.93]", "interBase_angle": 1.618, "planarity": 0.155, "simple_Shear": 0.169, "simple_Stretch": -0.118, "simple_Buckle": 1.504, "simple_Propeller": -0.597, "bp_simpleParams": [ 0.169, -0.118, 0.759, 1.504, -0.597, -3.044 ], "bp_params": [ 0.167, -0.122, 0.759, 1.491, -0.629, -3.044 ], "frame": { "rmsd": null, "origin": [ 171.482, 153.411, 193.984 ], "x_axis": [ 0.907, 0.054, 0.417 ], "y_axis": [ 0.417, -0.244, -0.876 ], "z_axis": [ 0.055, 0.968, -0.244 ], "quaternion": [ 0.596, -0.774, -0.152, -0.152 ] } }, { "index": 892, "nt1": "///A/2085", "nt2": "///A/2641", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 164.661, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.309, "chi2": -151.402, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.853, "C1C1_dist": 10.723, "N1N9_dist": 8.930, "C6C8_dist": 9.837, "CNNC_torsion": 1.104, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 7.329, "planarity": 0.109, "simple_Shear": -0.236, "simple_Stretch": -0.176, "simple_Buckle": -6.699, "simple_Propeller": -2.974, "bp_simpleParams": [ -0.236, -0.176, -0.565, -6.699, -2.974, 0.261 ], "bp_params": [ -0.233, -0.180, -0.565, -6.647, -3.088, 0.261 ], "frame": { "rmsd": null, "origin": [ 179.700, 158.182, 195.522 ], "x_axis": [ 0.849, -0.512, -0.128 ], "y_axis": [ -0.379, -0.421, -0.824 ], "z_axis": [ 0.368, 0.749, -0.551 ], "quaternion": [ -0.468, 0.840, -0.265, 0.071 ] } }, { "index": 893, "nt1": "///A/2086", "nt2": "///A/2640", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.196, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.861, "chi2": -143.709, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.633, "C1C1_dist": 10.138, "N1N9_dist": 8.630, "C6C8_dist": 9.649, "CNNC_torsion": 10.179, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.64]", "interBase_angle": 5.121, "planarity": 0.291, "simple_Shear": -0.179, "simple_Stretch": -0.460, "simple_Buckle": -4.981, "simple_Propeller": -1.193, "bp_simpleParams": [ -0.179, -0.460, -1.415, -4.981, -1.193, 3.937 ], "bp_params": [ -0.173, -0.463, -1.415, -4.964, -1.260, 3.934 ], "frame": { "rmsd": null, "origin": [ 181.126, 161.561, 194.385 ], "x_axis": [ 0.521, -0.681, -0.515 ], "y_axis": [ -0.778, -0.131, -0.615 ], "z_axis": [ 0.351, 0.721, -0.598 ], "quaternion": [ -0.445, 0.750, -0.486, -0.055 ] } }, { "index": 894, "nt1": "///A/2098", "nt2": "///A/2471", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.892, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.736, "chi2": -167.849, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.956, "C1C1_dist": 10.674, "N1N9_dist": 8.894, "C6C8_dist": 9.821, "CNNC_torsion": -4.784, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 4.915, "planarity": 0.131, "simple_Shear": -0.216, "simple_Stretch": -0.209, "simple_Buckle": 4.272, "simple_Propeller": 2.429, "bp_simpleParams": [ -0.216, -0.209, 0.668, 4.272, 2.429, 0.491 ], "bp_params": [ -0.213, -0.213, 0.668, 4.233, 2.497, 0.491 ], "frame": { "rmsd": null, "origin": [ 186.395, 185.485, 174.700 ], "x_axis": [ 0.744, -0.581, -0.330 ], "y_axis": [ -0.332, 0.107, -0.937 ], "z_axis": [ 0.580, 0.807, -0.114 ], "quaternion": [ 0.659, -0.662, 0.345, -0.094 ] } }, { "index": 895, "nt1": "///A/2099", "nt2": "///A/2470", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.926, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.181, "chi2": -166.748, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.248, "C1C1_dist": 10.700, "N1N9_dist": 8.891, "C6C8_dist": 9.786, "CNNC_torsion": -6.619, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 18.608, "planarity": 0.199, "simple_Shear": -0.217, "simple_Stretch": -0.163, "simple_Buckle": -14.188, "simple_Propeller": -12.040, "bp_simpleParams": [ -0.217, -0.163, -0.494, -14.188, -12.040, 0.302 ], "bp_params": [ -0.216, -0.165, -0.494, -14.072, -12.175, 0.302 ], "frame": { "rmsd": null, "origin": [ 189.813, 187.235, 175.498 ], "x_axis": [ 0.122, -0.638, -0.760 ], "y_axis": [ -0.559, 0.589, -0.584 ], "z_axis": [ 0.820, 0.496, -0.285 ], "quaternion": [ 0.597, -0.452, 0.662, -0.033 ] } }, { "index": 896, "nt1": "///A/2100", "nt2": "///A/2467", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.145, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.523, "chi2": -152.829, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 80.803, "C1C1_dist": 10.245, "N1N9_dist": 9.098, "C6C8_dist": 10.454, "CNNC_torsion": -4.860, "hbonds_num": 1, "hbonds_desc": "N1*O2(carbonyl)[3.00]", "interBase_angle": 12.014, "planarity": 0.227, "simple_Shear": -2.381, "simple_Stretch": 1.082, "simple_Buckle": -11.528, "simple_Propeller": 3.379, "bp_simpleParams": [ -2.381, 1.082, 0.561, -11.528, 3.379, 23.803 ], "bp_params": [ -2.570, 0.482, 0.561, -12.002, 0.516, 23.676 ], "frame": { "rmsd": null, "origin": [ 193.195, 187.799, 173.939 ], "x_axis": [ -0.078, -0.344, -0.936 ], "y_axis": [ -0.738, 0.651, -0.178 ], "z_axis": [ 0.671, 0.676, -0.304 ], "quaternion": [ 0.563, -0.379, 0.713, 0.175 ] } }, { "index": 897, "nt1": "///A/2101", "nt2": "///A/2465", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.602, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 43.142, "chi2": -169.386, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.292, "C1C1_dist": 12.716, "N1N9_dist": 10.681, "C6C8_dist": 10.994, "CNNC_torsion": 13.095, "hbonds_num": 4, "hbonds_desc": "O6(carbonyl)*O6(carbonyl)[2.96],O6(carbonyl)-N1(imino)[3.35],N1(imino)*N1(imino)[3.18],N2(amino)*N2(amino)[3.12]", "unusual_base2base_hbonds": 3, "interBase_angle": 11.870, "planarity": 0.382, "simple_Shear": -0.644, "simple_Stretch": 1.233, "simple_Buckle": 11.863, "simple_Propeller": -0.400, "bp_simpleParams": [ -0.644, 1.233, -1.521, 11.863, -0.400, -22.114 ], "bp_params": [ -0.724, 1.188, -1.521, 11.863, 0.385, -21.999 ], "frame": { "rmsd": null, "origin": [ 196.891, 189.893, 172.520 ], "x_axis": [ -0.717, 0.205, -0.667 ], "y_axis": [ -0.482, 0.545, 0.686 ], "z_axis": [ 0.504, 0.813, -0.292 ], "quaternion": [ 0.366, -0.087, 0.799, 0.469 ] } }, { "index": 898, "nt1": "///A/2101", "nt2": "///A/2466", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.602, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.513, "chi2": -167.588, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.078, "C1C1_dist": 10.368, "N1N9_dist": 8.750, "C6C8_dist": 9.752, "CNNC_torsion": -9.755, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.67]", "interBase_angle": 5.474, "planarity": 0.276, "simple_Shear": -0.145, "simple_Stretch": -0.305, "simple_Buckle": -4.380, "simple_Propeller": 3.283, "bp_simpleParams": [ -0.145, -0.305, 0.985, -4.380, 3.283, 4.089 ], "bp_params": [ -0.141, -0.307, 0.985, -4.415, 3.235, 4.087 ], "frame": { "rmsd": null, "origin": [ 196.065, 189.278, 173.583 ], "x_axis": [ -0.587, 0.076, -0.806 ], "y_axis": [ -0.557, 0.684, 0.471 ], "z_axis": [ 0.587, 0.725, -0.359 ], "quaternion": [ 0.429, -0.148, 0.811, 0.369 ] } }, { "index": 899, "nt1": "///A/2102", "nt2": "///A/2464", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.783, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.695, "chi2": -153.797, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 43.481, "C1C1_dist": 11.466, "N1N9_dist": 9.502, "C6C8_dist": 9.973, "CNNC_torsion": 4.352, "hbonds_num": 2, "hbonds_desc": "N3-N6(amino)[3.55],N4(amino)*N6(amino)[2.99]", "unusual_base2base_hbonds": 1, "interBase_angle": 22.913, "planarity": 0.330, "simple_Shear": 0.739, "simple_Stretch": 0.117, "simple_Buckle": 18.766, "simple_Propeller": -13.147, "bp_simpleParams": [ 0.739, 0.117, -1.872, 18.766, -13.147, -16.559 ], "bp_params": [ 0.745, 0.069, -1.872, 17.920, -14.277, -16.489 ], "frame": { "rmsd": null, "origin": [ 198.453, 191.884, 170.649 ], "x_axis": [ -0.903, 0.413, -0.118 ], "y_axis": [ 0.029, 0.334, 0.942 ], "z_axis": [ 0.428, 0.847, -0.314 ], "quaternion": [ 0.171, 0.138, 0.799, 0.560 ] } }, { "index": 900, "nt1": "///A/2102", "nt2": "///A/2465", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.783, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 66.505, "chi2": -169.386, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 64.834, "C1C1_dist": 9.643, "N1N9_dist": 8.428, "C6C8_dist": 9.697, "CNNC_torsion": -10.683, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.43],N3-N1(imino)[2.94],N4(amino)-O6(carbonyl)[3.53]", "interBase_angle": 15.580, "planarity": 0.445, "simple_Shear": 0.295, "simple_Stretch": -0.215, "simple_Buckle": 15.557, "simple_Propeller": -0.857, "bp_simpleParams": [ 0.295, -0.215, 1.243, 15.557, -0.857, 16.188 ], "bp_params": [ 0.290, -0.222, 1.243, 15.532, -1.225, 16.043 ], "frame": { "rmsd": null, "origin": [ 197.509, 190.759, 171.291 ], "x_axis": [ -0.844, 0.354, -0.402 ], "y_axis": [ -0.206, 0.479, 0.854 ], "z_axis": [ 0.495, 0.803, -0.331 ], "quaternion": [ 0.275, 0.046, 0.815, 0.509 ] } }, { "index": 901, "nt1": "///A/2103", "nt2": "///A/2464", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -123.775, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 67.631, "chi2": -153.797, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 65.084, "C1C1_dist": 8.996, "N1N9_dist": 7.823, "C6C8_dist": 8.909, "CNNC_torsion": -20.189, "hbonds_num": 1, "hbonds_desc": "N3(imino)-N1[2.76]", "interBase_angle": 65.383, "planarity": 0.687, "simple_Shear": 0.869, "simple_Stretch": 0.299, "simple_Buckle": 58.401, "simple_Propeller": -29.398, "bp_simpleParams": [ 0.869, 0.299, -0.918, 58.401, -29.398, 23.194 ], "bp_params": [ 0.875, 0.280, -0.918, 58.636, -28.928, 21.128 ], "frame": { "rmsd": null, "origin": [ 198.734, 192.523, 170.830 ], "x_axis": [ -0.823, 0.555, 0.124 ], "y_axis": [ 0.452, 0.506, 0.735 ], "z_axis": [ 0.345, 0.660, -0.667 ], "quaternion": [ 0.064, 0.291, 0.865, 0.403 ] } }, { "index": 902, "nt1": "///A/2106", "nt2": "///A/2272", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 148.710, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 39.007, "chi2": -150.198, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 42.607, "C1C1_dist": 11.200, "N1N9_dist": 8.981, "C6C8_dist": 9.528, "CNNC_torsion": -33.631, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.77],N1-N3(imino)[2.90]", "interBase_angle": 32.216, "planarity": 0.414, "simple_Shear": -0.111, "simple_Stretch": -0.220, "simple_Buckle": -15.552, "simple_Propeller": -28.214, "bp_simpleParams": [ -0.111, -0.220, 0.318, -15.552, -28.214, -16.543 ], "bp_params": [ -0.113, -0.219, 0.318, -15.654, -28.157, -16.901 ], "frame": { "rmsd": null, "origin": [ 196.106, 196.204, 165.171 ], "x_axis": [ -0.114, -0.567, 0.816 ], "y_axis": [ 0.972, -0.234, -0.028 ], "z_axis": [ 0.207, 0.790, 0.577 ], "quaternion": [ 0.554, -0.369, -0.275, -0.694 ] } }, { "index": 903, "nt1": "///A/2107", "nt2": "///A/2271", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -139.387, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 64.753, "chi2": -137.146, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.470, "C1C1_dist": 10.121, "N1N9_dist": 8.725, "C6C8_dist": 9.842, "CNNC_torsion": -18.214, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.94],N4(amino)-O6(carbonyl)[3.12]", "interBase_angle": 27.142, "planarity": 0.419, "simple_Shear": 0.219, "simple_Stretch": -0.014, "simple_Buckle": -17.811, "simple_Propeller": -20.481, "bp_simpleParams": [ 0.219, -0.014, -0.132, -17.811, -20.481, 9.969 ], "bp_params": [ 0.218, -0.021, -0.132, -18.427, -19.928, 9.994 ], "frame": { "rmsd": null, "origin": [ 195.953, 199.903, 166.135 ], "x_axis": [ 0.260, -0.560, 0.787 ], "y_axis": [ 0.920, -0.104, -0.377 ], "z_axis": [ 0.293, 0.822, 0.488 ], "quaternion": [ 0.641, -0.468, -0.193, -0.577 ] } }, { "index": 904, "nt1": "///A/2108", "nt2": "///A/2270", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -144.240, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.248, "chi2": -150.164, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.828, "C1C1_dist": 10.472, "N1N9_dist": 8.782, "C6C8_dist": 9.738, "CNNC_torsion": -11.199, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.84],O4(carbonyl)-N6(amino)[2.96]", "interBase_angle": 16.114, "planarity": 0.230, "simple_Shear": 0.044, "simple_Stretch": -0.174, "simple_Buckle": -6.410, "simple_Propeller": -14.784, "bp_simpleParams": [ 0.044, -0.174, -0.390, -6.410, -14.784, 2.552 ], "bp_params": [ 0.044, -0.174, -0.390, -6.419, -14.780, 2.569 ], "frame": { "rmsd": null, "origin": [ 196.567, 203.545, 166.548 ], "x_axis": [ 0.702, -0.541, 0.464 ], "y_axis": [ 0.608, 0.116, -0.786 ], "z_axis": [ 0.371, 0.833, 0.410 ], "quaternion": [ 0.746, -0.542, -0.031, -0.385 ] } }, { "index": 905, "nt1": "///A/2109", "nt2": "///A/2269", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 171.348, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.213, "chi2": -134.961, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.408, "C1C1_dist": 10.535, "N1N9_dist": 8.814, "C6C8_dist": 9.747, "CNNC_torsion": 4.345, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.86],N2(amino)-O2(carbonyl)[2.70]", "interBase_angle": 11.764, "planarity": 0.200, "simple_Shear": -0.166, "simple_Stretch": -0.280, "simple_Buckle": -11.331, "simple_Propeller": -3.162, "bp_simpleParams": [ -0.166, -0.280, -1.070, -11.331, -3.162, 1.704 ], "bp_params": [ -0.163, -0.281, -1.070, -11.300, -3.271, 1.697 ], "frame": { "rmsd": null, "origin": [ 197.338, 206.771, 168.780 ], "x_axis": [ 0.790, -0.611, 0.051 ], "y_axis": [ 0.238, 0.228, -0.944 ], "z_axis": [ 0.566, 0.758, 0.325 ], "quaternion": [ 0.765, -0.556, 0.168, -0.277 ] } }, { "index": 906, "nt1": "///A/2110", "nt2": "///A/2268", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 164.795, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.248, "chi2": -156.664, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.884, "C1C1_dist": 10.569, "N1N9_dist": 8.836, "C6C8_dist": 9.820, "CNNC_torsion": -1.843, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.63],N3-N1(imino)[2.85],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 8.853, "planarity": 0.168, "simple_Shear": 0.173, "simple_Stretch": -0.211, "simple_Buckle": 2.716, "simple_Propeller": -8.426, "bp_simpleParams": [ 0.173, -0.211, -0.604, 2.716, -8.426, 3.477 ], "bp_params": [ 0.171, -0.213, -0.604, 2.612, -8.459, 3.486 ], "frame": { "rmsd": null, "origin": [ 199.306, 208.373, 170.706 ], "x_axis": [ 0.711, -0.523, -0.470 ], "y_axis": [ -0.243, 0.443, -0.863 ], "z_axis": [ 0.660, 0.728, 0.188 ], "quaternion": [ 0.765, -0.520, 0.369, -0.091 ] } }, { "index": 907, "nt1": "///A/2112", "nt2": "///A/2265", "bp": "G-U", "name": "~Sheared", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -172.225, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 11.210, "chi2": -142.670, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 98.353, "C1C1_dist": 9.555, "N1N9_dist": 8.419, "C6C8_dist": 8.949, "CNNC_torsion": 83.127, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-O2'(hydroxyl)[2.80]", "interBase_angle": 8.803, "planarity": 0.269, "simple_Shear": -7.302, "simple_Stretch": 1.988, "simple_Buckle": -8.764, "simple_Propeller": -0.826, "bp_simpleParams": [ -7.302, 1.988, -1.529, -8.764, -0.826, -1.231 ], "bp_params": [ -6.465, -3.934, -1.529, -5.429, -6.929, -1.232 ], "frame": { "rmsd": null, "origin": [ 204.367, 214.017, 170.968 ], "x_axis": [ -0.132, -0.112, -0.985 ], "y_axis": [ -0.826, 0.561, 0.046 ], "z_axis": [ 0.548, 0.820, -0.167 ], "quaternion": [ 0.562, -0.344, 0.682, 0.318 ] } }, { "index": 908, "nt1": "///A/2112", "nt2": "///A/2266", "bp": "G-G", "name": "~Sheared", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -172.225, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 26.993, "chi2": -114.519, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 96.588, "C1C1_dist": 7.453, "N1N9_dist": 6.456, "C6C8_dist": 7.039, "CNNC_torsion": -88.883, "hbonds_num": 2, "hbonds_desc": "OP2-N2(amino)[3.26],N7-N2(amino)[2.43]", "interBase_angle": 52.785, "planarity": 0.735, "simple_Shear": -7.491, "simple_Stretch": 1.297, "simple_Buckle": -52.409, "simple_Propeller": 6.288, "bp_simpleParams": [ -7.491, 1.297, 1.478, -52.409, 6.288, 5.533 ], "bp_params": [ -5.808, -4.906, 1.478, -38.199, -36.430, 5.538 ], "frame": { "rmsd": null, "origin": [ 203.158, 213.154, 171.606 ], "x_axis": [ -0.249, -0.322, -0.913 ], "y_axis": [ -0.646, 0.758, -0.091 ], "z_axis": [ 0.721, 0.567, -0.397 ], "quaternion": [ 0.527, -0.312, 0.775, 0.154 ] } }, { "index": 909, "nt1": "///A/2113", "nt2": "///A/2264", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.711, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.288, "chi2": -172.615, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.600, "C1C1_dist": 10.819, "N1N9_dist": 8.863, "C6C8_dist": 9.701, "CNNC_torsion": 9.556, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.83]", "interBase_angle": 5.056, "planarity": 0.219, "simple_Shear": 0.099, "simple_Stretch": -0.335, "simple_Buckle": -3.150, "simple_Propeller": 3.955, "bp_simpleParams": [ 0.099, -0.335, -0.859, -3.150, 3.955, -3.472 ], "bp_params": [ 0.097, -0.335, -0.859, -3.131, 3.970, -3.472 ], "frame": { "rmsd": null, "origin": [ 206.648, 216.605, 170.351 ], "x_axis": [ -0.859, 0.347, -0.376 ], "y_axis": [ -0.316, 0.220, 0.923 ], "z_axis": [ 0.403, 0.912, -0.079 ], "quaternion": [ 0.265, 0.011, 0.734, 0.625 ] } }, { "index": 910, "nt1": "///A/2114", "nt2": "///A/2263", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 164.214, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.242, "chi2": -172.205, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.682, "C1C1_dist": 10.603, "N1N9_dist": 8.844, "C6C8_dist": 9.828, "CNNC_torsion": 2.183, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.64],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.98]", "interBase_angle": 10.604, "planarity": 0.154, "simple_Shear": 0.238, "simple_Stretch": -0.133, "simple_Buckle": 10.229, "simple_Propeller": 2.795, "bp_simpleParams": [ 0.238, -0.133, -0.036, 10.229, 2.795, 2.931 ], "bp_params": [ 0.235, -0.138, -0.036, 10.286, 2.578, 2.920 ], "frame": { "rmsd": null, "origin": [ 207.805, 219.230, 168.517 ], "x_axis": [ -0.949, 0.280, 0.148 ], "y_axis": [ 0.127, -0.091, 0.988 ], "z_axis": [ 0.290, 0.956, 0.051 ], "quaternion": [ 0.053, 0.151, 0.672, 0.723 ] } }, { "index": 911, "nt1": "///A/2116", "nt2": "///A/2261", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.830, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.389, "chi2": -173.959, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.187, "C1C1_dist": 10.441, "N1N9_dist": 8.723, "C6C8_dist": 9.636, "CNNC_torsion": 10.892, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.84],N1(imino)-N3[2.83],N2(amino)-O2(carbonyl)[2.68]", "interBase_angle": 17.347, "planarity": 0.231, "simple_Shear": -0.120, "simple_Stretch": -0.324, "simple_Buckle": -17.345, "simple_Propeller": 0.264, "bp_simpleParams": [ -0.120, -0.324, -1.116, -17.345, 0.264, -0.796 ], "bp_params": [ -0.118, -0.325, -1.116, -17.347, 0.123, -0.787 ], "frame": { "rmsd": null, "origin": [ 205.651, 229.264, 166.070 ], "x_axis": [ -0.127, -0.263, 0.956 ], "y_axis": [ 0.988, 0.052, 0.146 ], "z_axis": [ -0.088, 0.963, 0.253 ], "quaternion": [ 0.543, -0.377, -0.481, -0.576 ] } }, { "index": 912, "nt1": "///A/2117", "nt2": "///A/2260", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 174.668, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.912, "chi2": -158.798, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.266, "C1C1_dist": 10.732, "N1N9_dist": 8.924, "C6C8_dist": 9.764, "CNNC_torsion": 17.141, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.96],N1-N3(imino)[2.88]", "interBase_angle": 16.915, "planarity": 0.250, "simple_Shear": 0.114, "simple_Stretch": -0.171, "simple_Buckle": -11.634, "simple_Propeller": 12.279, "bp_simpleParams": [ 0.114, -0.171, -0.952, -11.634, 12.279, -5.314 ], "bp_params": [ 0.112, -0.172, -0.952, -11.497, 12.406, -5.318 ], "frame": { "rmsd": null, "origin": [ 203.978, 232.290, 167.136 ], "x_axis": [ 0.425, -0.238, 0.873 ], "y_axis": [ 0.905, 0.143, -0.401 ], "z_axis": [ -0.029, 0.961, 0.276 ], "quaternion": [ 0.679, -0.501, -0.332, -0.421 ] } }, { "index": 913, "nt1": "///A/2118", "nt2": "///A/2259", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.813, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 72.200, "chi2": -177.582, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.374, "C1C1_dist": 10.364, "N1N9_dist": 8.945, "C6C8_dist": 10.130, "CNNC_torsion": 13.675, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.90],O2(carbonyl)-N2(amino)[3.13],N3(imino)-O6(carbonyl)[3.49]", "interBase_angle": 18.895, "planarity": 0.250, "simple_Shear": 1.969, "simple_Stretch": 0.420, "simple_Buckle": 6.904, "simple_Propeller": 17.589, "bp_simpleParams": [ 1.969, 0.420, -0.357, 6.904, 17.589, 12.072 ], "bp_params": [ 2.013, 0.018, -0.357, 10.240, 15.880, 12.140 ], "frame": { "rmsd": null, "origin": [ 203.938, 234.607, 169.857 ], "x_axis": [ 0.907, -0.192, 0.376 ], "y_axis": [ 0.416, 0.260, -0.871 ], "z_axis": [ 0.070, 0.946, 0.315 ], "quaternion": [ 0.788, -0.577, -0.097, -0.193 ] } }, { "index": 914, "nt1": "///A/2119", "nt2": "///A/2258", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -143.410, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.377, "chi2": -159.560, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.860, "C1C1_dist": 10.255, "N1N9_dist": 8.675, "C6C8_dist": 9.656, "CNNC_torsion": 6.787, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.01],N1-N3(imino)[2.88]", "interBase_angle": 13.949, "planarity": 0.289, "simple_Shear": 0.074, "simple_Stretch": -0.350, "simple_Buckle": -12.295, "simple_Propeller": -6.589, "bp_simpleParams": [ 0.074, -0.350, -1.528, -12.295, -6.589, 3.344 ], "bp_params": [ 0.068, -0.351, -1.528, -12.403, -6.381, 3.330 ], "frame": { "rmsd": null, "origin": [ 204.803, 237.120, 172.917 ], "x_axis": [ 0.769, -0.474, -0.429 ], "y_axis": [ 0.022, 0.690, -0.723 ], "z_axis": [ 0.639, 0.547, 0.541 ], "quaternion": [ 0.866, -0.367, 0.308, -0.143 ] } }, { "index": 915, "nt1": "///A/2120", "nt2": "///A/2257", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.814, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.920, "chi2": -163.530, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 38.195, "C1C1_dist": 10.887, "N1N9_dist": 8.929, "C6C8_dist": 9.562, "CNNC_torsion": 8.389, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.14],N3(imino)-O6(carbonyl)[2.78]", "interBase_angle": 1.285, "planarity": 0.194, "simple_Shear": 2.013, "simple_Stretch": -0.211, "simple_Buckle": 0.368, "simple_Propeller": -1.232, "bp_simpleParams": [ 2.013, -0.211, -0.941, 0.368, -1.232, -13.063 ], "bp_params": [ 1.930, -0.608, -0.941, 0.115, -1.280, -13.064 ], "frame": { "rmsd": null, "origin": [ 206.273, 238.342, 175.735 ], "x_axis": [ 0.631, -0.018, -0.776 ], "y_axis": [ -0.446, 0.809, -0.382 ], "z_axis": [ 0.635, 0.587, 0.503 ], "quaternion": [ 0.858, -0.282, 0.411, 0.125 ] } }, { "index": 916, "nt1": "///A/2122", "nt2": "///A/2225", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 168.426, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.587, "chi2": -161.932, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.838, "C1C1_dist": 10.619, "N1N9_dist": 8.779, "C6C8_dist": 9.603, "CNNC_torsion": -20.183, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.82],N1(imino)-N3[2.86],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 9.924, "planarity": 0.289, "simple_Shear": -0.031, "simple_Stretch": -0.489, "simple_Buckle": 7.372, "simple_Propeller": -6.643, "bp_simpleParams": [ -0.031, -0.489, 1.400, 7.372, -6.643, -5.107 ], "bp_params": [ -0.030, -0.489, 1.400, 7.377, -6.638, -5.105 ], "frame": { "rmsd": null, "origin": [ 215.550, 249.566, 176.593 ], "x_axis": [ 0.254, -0.960, -0.119 ], "y_axis": [ -0.940, -0.216, -0.266 ], "z_axis": [ 0.230, 0.179, -0.957 ], "quaternion": [ -0.143, 0.779, -0.610, 0.036 ] } }, { "index": 917, "nt1": "///A/2123", "nt2": "///A/2224", "bp": "A-U", "name": "--", "Saenger": "--", "LW": ".WS", "DSSR": ".W-m", "intra_chain": true, "chi1": -154.450, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 36.256, "chi2": -150.732, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 81.877, "C1C1_dist": 9.543, "N1N9_dist": 8.219, "C6C8_dist": 9.116, "CNNC_torsion": -58.348, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.72]", "interBase_angle": 71.834, "planarity": 0.852, "simple_Shear": -4.657, "simple_Stretch": 0.877, "simple_Buckle": -52.057, "simple_Propeller": -49.499, "bp_simpleParams": [ -4.657, 0.877, -0.644, -52.057, -49.499, 33.917 ], "bp_params": [ -4.561, -1.284, -0.644, -24.925, -67.371, 39.633 ], "frame": { "rmsd": null, "origin": [ 217.995, 248.015, 174.090 ], "x_axis": [ -0.290, -0.930, 0.225 ], "y_axis": [ -0.834, 0.131, -0.536 ], "z_axis": [ 0.469, -0.343, -0.814 ], "quaternion": [ 0.082, -0.590, 0.747, -0.294 ] } }, { "index": 918, "nt1": "///A/2124", "nt2": "///A/2223", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.663, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.942, "chi2": -168.267, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.826, "C1C1_dist": 10.650, "N1N9_dist": 8.792, "C6C8_dist": 9.565, "CNNC_torsion": 16.814, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.79],N1-N3(imino)[2.89]", "interBase_angle": 5.471, "planarity": 0.311, "simple_Shear": 0.265, "simple_Stretch": -0.465, "simple_Buckle": -5.287, "simple_Propeller": 1.409, "bp_simpleParams": [ 0.265, -0.465, -1.523, -5.287, 1.409, -7.483 ], "bp_params": [ 0.251, -0.473, -1.523, -5.242, 1.567, -7.475 ], "frame": { "rmsd": null, "origin": [ 221.708, 251.081, 171.062 ], "x_axis": [ -0.796, -0.602, -0.064 ], "y_axis": [ -0.587, 0.793, -0.164 ], "z_axis": [ 0.149, -0.093, -0.984 ], "quaternion": [ 0.056, -0.314, 0.945, -0.068 ] } }, { "index": 919, "nt1": "///A/2124", "nt2": "///A/2224", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": 178.663, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 33.123, "chi2": -150.732, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 117.720, "C1C1_dist": 9.099, "N1N9_dist": 8.606, "C6C8_dist": 9.594, "CNNC_torsion": -54.219, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.13],N1-O2'(hydroxyl)[2.26]", "interBase_angle": 58.743, "planarity": 0.711, "simple_Shear": -6.115, "simple_Stretch": 3.755, "simple_Buckle": -58.743, "simple_Propeller": -0.037, "bp_simpleParams": [ -6.115, 3.755, 0.561, -58.743, -0.037, 49.430 ], "bp_params": [ -7.061, -1.280, 0.561, -43.753, -39.197, 49.043 ], "frame": { "rmsd": null, "origin": [ 219.291, 248.378, 172.920 ], "x_axis": [ -0.492, -0.807, 0.328 ], "y_axis": [ -0.822, 0.306, -0.481 ], "z_axis": [ 0.288, -0.506, -0.813 ], "quaternion": [ -0.012, -0.504, 0.808, -0.305 ] } }, { "index": 920, "nt1": "///A/2125", "nt2": "///A/2222", "bp": "U-C", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.668, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.656, "chi2": -154.907, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.909, "C1C1_dist": 8.959, "N1N9_dist": 7.244, "C6C8_dist": 8.312, "CNNC_torsion": 16.340, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N3[3.17],O4(carbonyl)-N4(amino)[2.73]", "interBase_angle": 6.081, "planarity": 0.299, "simple_Shear": -0.858, "simple_Stretch": -1.888, "simple_Buckle": -5.338, "simple_Propeller": 2.913, "bp_simpleParams": [ -0.858, -1.888, -1.430, -5.338, 2.913, -0.014 ], "bp_params": [ -0.694, -1.954, -1.430, -5.567, 2.446, -0.014 ], "frame": { "rmsd": null, "origin": [ 223.503, 249.491, 167.500 ], "x_axis": [ -0.976, -0.193, -0.099 ], "y_axis": [ -0.192, 0.981, -0.022 ], "z_axis": [ 0.102, -0.002, -0.995 ], "quaternion": [ 0.051, -0.097, 0.994, -0.006 ] } }, { "index": 921, "nt1": "///A/2126", "nt2": "///A/2221", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.288, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.481, "chi2": -172.239, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.488, "C1C1_dist": 10.645, "N1N9_dist": 8.888, "C6C8_dist": 9.830, "CNNC_torsion": 6.283, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 3.838, "planarity": 0.117, "simple_Shear": -0.147, "simple_Stretch": -0.198, "simple_Buckle": -1.573, "simple_Propeller": 3.500, "bp_simpleParams": [ -0.147, -0.198, -0.552, -1.573, 3.500, 0.332 ], "bp_params": [ -0.145, -0.199, -0.552, -1.611, 3.483, 0.332 ], "frame": { "rmsd": null, "origin": [ 222.921, 248.742, 163.908 ], "x_axis": [ -0.909, 0.415, -0.032 ], "y_axis": [ 0.413, 0.910, 0.044 ], "z_axis": [ 0.048, 0.026, -0.999 ], "quaternion": [ 0.020, 0.212, 0.977, 0.018 ] } }, { "index": 922, "nt1": "///A/2127", "nt2": "///A/2220", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.428, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.692, "chi2": -174.895, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.385, "C1C1_dist": 10.302, "N1N9_dist": 8.676, "C6C8_dist": 9.700, "CNNC_torsion": 4.530, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.75],O4(carbonyl)-N6(amino)[2.97]", "interBase_angle": 0.751, "planarity": 0.140, "simple_Shear": -0.003, "simple_Stretch": -0.249, "simple_Buckle": -0.740, "simple_Propeller": -0.132, "bp_simpleParams": [ -0.003, -0.249, -0.631, -0.740, -0.132, 3.592 ], "bp_params": [ -0.001, -0.249, -0.631, -0.739, -0.137, 3.592 ], "frame": { "rmsd": null, "origin": [ 221.258, 248.223, 160.695 ], "x_axis": [ -0.444, 0.895, 0.039 ], "y_axis": [ 0.896, 0.444, 0.004 ], "z_axis": [ -0.013, 0.037, -0.999 ], "quaternion": [ -0.015, 0.527, 0.850, 0.012 ] } }, { "index": 923, "nt1": "///A/2128", "nt2": "///A/2219", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.741, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 46.904, "chi2": -171.269, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 45.234, "C1C1_dist": 10.477, "N1N9_dist": 8.431, "C6C8_dist": 9.101, "CNNC_torsion": -8.420, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.63],N3(imino)*N1(imino)[2.49],O4(carbonyl)*O6(carbonyl)[2.10]", "unusual_base2base_hbonds": 2, "interBase_angle": 6.741, "planarity": 0.096, "simple_Shear": 0.407, "simple_Stretch": -0.827, "simple_Buckle": -3.146, "simple_Propeller": -5.962, "bp_simpleParams": [ 0.407, -0.827, 0.158, -3.146, -5.962, -12.056 ], "bp_params": [ 0.375, -0.842, 0.158, -3.368, -5.840, -12.067 ], "frame": { "rmsd": null, "origin": [ 219.001, 248.745, 157.485 ], "x_axis": [ -0.091, 0.987, 0.133 ], "y_axis": [ 0.993, 0.100, -0.062 ], "z_axis": [ -0.074, 0.127, -0.989 ], "quaternion": [ -0.070, 0.671, 0.738, 0.022 ] } }, { "index": 924, "nt1": "///A/2129", "nt2": "///A/2218", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.196, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.161, "chi2": -171.937, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.922, "C1C1_dist": 10.056, "N1N9_dist": 8.164, "C6C8_dist": 8.949, "CNNC_torsion": 1.672, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)*O4(carbonyl)[2.09],N1(imino)*N3(imino)[2.32],N2(amino)-O2(carbonyl)[2.28]", "unusual_base2base_hbonds": 2, "interBase_angle": 12.721, "planarity": 0.147, "simple_Shear": -0.454, "simple_Stretch": -0.981, "simple_Buckle": -12.366, "simple_Propeller": -2.983, "bp_simpleParams": [ -0.454, -0.981, -0.600, -12.366, -2.983, -6.483 ], "bp_params": [ -0.415, -0.998, -0.600, -12.242, -3.456, -6.449 ], "frame": { "rmsd": null, "origin": [ 216.646, 250.624, 154.770 ], "x_axis": [ 0.477, 0.865, 0.155 ], "y_axis": [ 0.855, -0.416, -0.309 ], "z_axis": [ -0.203, 0.280, -0.938 ], "quaternion": [ -0.175, 0.841, 0.511, -0.014 ] } }, { "index": 925, "nt1": "///A/2130", "nt2": "///A/2217", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.059, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.397, "chi2": -138.399, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 62.635, "C1C1_dist": 9.948, "N1N9_dist": 8.388, "C6C8_dist": 9.419, "CNNC_torsion": 3.884, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)*O4(carbonyl)[2.85],N1(imino)*N3(imino)[2.71],N2(amino)-O2(carbonyl)[2.30]", "unusual_base2base_hbonds": 2, "interBase_angle": 6.812, "planarity": 0.099, "simple_Shear": -0.894, "simple_Stretch": -0.535, "simple_Buckle": -6.568, "simple_Propeller": 1.805, "bp_simpleParams": [ -0.894, -0.535, -0.496, -6.568, 1.805, 3.658 ], "bp_params": [ -0.845, -0.609, -0.496, -6.699, 1.235, 3.652 ], "frame": { "rmsd": null, "origin": [ 215.291, 252.246, 152.285 ], "x_axis": [ 0.832, 0.553, 0.044 ], "y_axis": [ 0.537, -0.782, -0.318 ], "z_axis": [ -0.142, 0.288, -0.947 ], "quaternion": [ -0.161, 0.943, 0.289, -0.026 ] } }, { "index": 926, "nt1": "///A/2131", "nt2": "///A/2216", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 179.437, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.313, "chi2": 175.965, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.575, "C1C1_dist": 10.611, "N1N9_dist": 8.872, "C6C8_dist": 9.844, "CNNC_torsion": -0.451, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.83],O4(carbonyl)-N6(amino)[3.01]", "interBase_angle": 3.217, "planarity": 0.041, "simple_Shear": -0.007, "simple_Stretch": -0.096, "simple_Buckle": 3.131, "simple_Propeller": -0.737, "bp_simpleParams": [ -0.007, -0.096, -0.173, 3.131, -0.737, 1.707 ], "bp_params": [ -0.007, -0.096, -0.173, 3.136, -0.718, 1.706 ], "frame": { "rmsd": null, "origin": [ 215.604, 254.444, 149.811 ], "x_axis": [ 0.988, -0.111, -0.111 ], "y_axis": [ -0.136, -0.961, -0.242 ], "z_axis": [ -0.080, 0.255, -0.964 ], "quaternion": [ -0.126, 0.989, -0.062, -0.048 ] } }, { "index": 927, "nt1": "///A/2132", "nt2": "///A/2215", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.273, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.286, "chi2": -163.068, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.918, "C1C1_dist": 10.179, "N1N9_dist": 8.640, "C6C8_dist": 9.718, "CNNC_torsion": -3.774, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.01],N1-N3(imino)[2.73]", "interBase_angle": 9.750, "planarity": 0.138, "simple_Shear": 0.017, "simple_Stretch": -0.209, "simple_Buckle": -4.662, "simple_Propeller": -8.563, "bp_simpleParams": [ 0.017, -0.209, -0.515, -4.662, -8.563, 6.615 ], "bp_params": [ 0.015, -0.209, -0.515, -4.730, -8.526, 6.628 ], "frame": { "rmsd": null, "origin": [ 216.273, 256.058, 146.964 ], "x_axis": [ 0.771, -0.626, 0.120 ], "y_axis": [ -0.576, -0.765, -0.287 ], "z_axis": [ 0.271, 0.152, -0.950 ], "quaternion": [ -0.118, 0.934, -0.322, 0.105 ] } }, { "index": 928, "nt1": "///A/2133", "nt2": "///A/2214", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.567, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.366, "chi2": -173.799, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.054, "C1C1_dist": 10.444, "N1N9_dist": 8.843, "C6C8_dist": 9.847, "CNNC_torsion": -0.378, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.69],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 4.385, "planarity": 0.137, "simple_Shear": 0.159, "simple_Stretch": -0.181, "simple_Buckle": -2.449, "simple_Propeller": -3.638, "bp_simpleParams": [ 0.159, -0.181, -0.434, -2.449, -3.638, 3.015 ], "bp_params": [ 0.156, -0.183, -0.434, -2.492, -3.608, 3.016 ], "frame": { "rmsd": null, "origin": [ 218.125, 257.632, 144.549 ], "x_axis": [ 0.247, -0.965, -0.083 ], "y_axis": [ -0.932, -0.213, -0.292 ], "z_axis": [ 0.264, 0.149, -0.953 ], "quaternion": [ -0.142, 0.777, -0.611, 0.058 ] } }, { "index": 929, "nt1": "///A/2134", "nt2": "///A/2213", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 172.048, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.943, "chi2": -167.756, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.117, "C1C1_dist": 10.329, "N1N9_dist": 8.659, "C6C8_dist": 9.668, "CNNC_torsion": 0.464, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.90],N1-N3(imino)[2.69]", "interBase_angle": 0.228, "planarity": 0.008, "simple_Shear": -0.057, "simple_Stretch": -0.256, "simple_Buckle": 0.048, "simple_Propeller": 0.222, "bp_simpleParams": [ -0.057, -0.256, -0.029, 0.048, 0.222, 3.277 ], "bp_params": [ -0.057, -0.256, -0.029, 0.049, 0.222, 3.277 ], "frame": { "rmsd": null, "origin": [ 219.823, 257.966, 141.962 ], "x_axis": [ -0.246, -0.968, 0.041 ], "y_axis": [ -0.952, 0.234, -0.198 ], "z_axis": [ 0.182, -0.088, -0.979 ], "quaternion": [ 0.045, -0.612, 0.784, -0.091 ] } }, { "index": 930, "nt1": "///A/2135", "nt2": "///A/2212", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.915, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.343, "chi2": -170.568, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.201, "C1C1_dist": 10.531, "N1N9_dist": 8.871, "C6C8_dist": 9.841, "CNNC_torsion": 5.194, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.85],N2(amino)-O2(carbonyl)[2.70]", "interBase_angle": 2.580, "planarity": 0.095, "simple_Shear": -0.136, "simple_Stretch": -0.190, "simple_Buckle": -0.085, "simple_Propeller": 2.579, "bp_simpleParams": [ -0.136, -0.190, -0.418, -0.085, 2.579, 1.163 ], "bp_params": [ -0.134, -0.191, -0.418, -0.111, 2.578, 1.160 ], "frame": { "rmsd": null, "origin": [ 221.790, 256.995, 139.241 ], "x_axis": [ -0.723, -0.691, 0.010 ], "y_axis": [ -0.675, 0.703, -0.225 ], "z_axis": [ 0.149, -0.169, -0.974 ], "quaternion": [ 0.038, -0.370, 0.922, -0.107 ] } }, { "index": 931, "nt1": "///A/2136", "nt2": "///A/2211", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.422, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.092, "chi2": 172.720, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.812, "C1C1_dist": 10.597, "N1N9_dist": 8.861, "C6C8_dist": 9.818, "CNNC_torsion": 4.968, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.68],N3-N1(imino)[2.84],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 3.317, "planarity": 0.072, "simple_Shear": 0.229, "simple_Stretch": -0.202, "simple_Buckle": 2.161, "simple_Propeller": 2.517, "bp_simpleParams": [ 0.229, -0.202, -0.347, 2.161, 2.517, 1.168 ], "bp_params": [ 0.225, -0.207, -0.347, 2.206, 2.478, 1.168 ], "frame": { "rmsd": null, "origin": [ 222.593, 254.830, 136.578 ], "x_axis": [ -0.990, -0.131, -0.059 ], "y_axis": [ -0.116, 0.971, -0.207 ], "z_axis": [ 0.085, -0.198, -0.977 ], "quaternion": [ 0.036, -0.062, 0.992, -0.102 ] } }, { "index": 932, "nt1": "///A/2137", "nt2": "///A/2210", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.727, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 70.171, "chi2": -167.340, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.591, "C1C1_dist": 9.655, "N1N9_dist": 8.323, "C6C8_dist": 9.571, "CNNC_torsion": -5.237, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.55],O2(carbonyl)-N2(amino)[2.16]", "interBase_angle": 7.738, "planarity": 0.107, "simple_Shear": 1.323, "simple_Stretch": -0.267, "simple_Buckle": 7.271, "simple_Propeller": -2.646, "bp_simpleParams": [ 1.323, -0.267, 0.062, 7.271, -2.646, 13.612 ], "bp_params": [ 1.279, -0.434, 0.062, 6.877, -3.547, 13.594 ], "frame": { "rmsd": null, "origin": [ 222.007, 252.507, 133.946 ], "x_axis": [ -0.934, 0.353, -0.054 ], "y_axis": [ 0.357, 0.921, -0.155 ], "z_axis": [ -0.005, -0.165, -0.986 ], "quaternion": [ 0.013, 0.181, 0.980, -0.082 ] } }, { "index": 933, "nt1": "///A/2138", "nt2": "///A/2209", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.694, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 66.669, "chi2": -160.925, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.914, "C1C1_dist": 8.224, "N1N9_dist": 6.847, "C6C8_dist": 8.322, "CNNC_torsion": -24.504, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N3(imino)[3.19]", "interBase_angle": 33.306, "planarity": 0.444, "simple_Shear": 0.793, "simple_Stretch": -1.529, "simple_Buckle": -6.535, "simple_Propeller": -32.659, "bp_simpleParams": [ 0.793, -1.529, 0.149, -6.535, -32.659, 21.052 ], "bp_params": [ 0.649, -1.596, 0.149, -9.344, -31.968, 21.813 ], "frame": { "rmsd": null, "origin": [ 220.502, 251.151, 131.084 ], "x_axis": [ -0.560, 0.826, 0.073 ], "y_axis": [ 0.776, 0.553, -0.305 ], "z_axis": [ -0.292, -0.114, -0.949 ], "quaternion": [ -0.104, 0.458, 0.875, -0.120 ] } }, { "index": 934, "nt1": "///A/2139", "nt2": "///A/2208", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -101.107, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 51.644, "chi2": -174.381, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.517, "C1C1_dist": 10.701, "N1N9_dist": 8.911, "C6C8_dist": 9.845, "CNNC_torsion": -2.436, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.71]", "interBase_angle": 8.429, "planarity": 0.113, "simple_Shear": -0.202, "simple_Stretch": -0.163, "simple_Buckle": -6.407, "simple_Propeller": -5.476, "bp_simpleParams": [ -0.202, -0.163, -0.488, -6.407, -5.476, 1.626 ], "bp_params": [ -0.200, -0.166, -0.488, -6.332, -5.563, 1.625 ], "frame": { "rmsd": null, "origin": [ 219.181, 249.622, 127.959 ], "x_axis": [ 0.064, 0.997, 0.042 ], "y_axis": [ 0.876, -0.036, -0.481 ], "z_axis": [ -0.478, 0.068, -0.876 ], "quaternion": [ -0.195, 0.703, 0.666, -0.155 ] } }, { "index": 935, "nt1": "///A/2140", "nt2": "///A/2171", "bp": "U+G", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": -168.069, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 28.235, "chi2": -154.773, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 77.136, "C1C1_dist": 13.297, "N1N9_dist": 11.692, "C6C8_dist": 11.576, "CNNC_torsion": -17.389, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N2(amino)[3.91]", "interBase_angle": 31.391, "planarity": 0.457, "simple_Shear": -1.679, "simple_Stretch": 5.912, "simple_Buckle": 19.640, "simple_Propeller": -24.488, "bp_simpleParams": [ -1.679, 5.912, 0.530, 19.640, -24.488, 71.697 ], "bp_params": [ -5.155, -3.346, 0.530, 17.686, 25.935, 72.463 ], "frame": { "rmsd": null, "origin": [ 236.152, 251.321, 123.758 ], "x_axis": [ 0.760, 0.345, 0.551 ], "y_axis": [ -0.504, -0.222, 0.835 ], "z_axis": [ 0.410, -0.912, 0.006 ], "quaternion": [ 0.621, 0.703, -0.057, 0.342 ] } }, { "index": 936, "nt1": "///A/2143", "nt2": "///A/2200", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -177.859, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 69.590, "chi2": -118.333, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 66.373, "C1C1_dist": 8.710, "N1N9_dist": 8.079, "C6C8_dist": 10.303, "CNNC_torsion": -172.776, "hbonds_num": 0, "hbonds_desc": "", "interBase_angle": 14.876, "planarity": 0.204, "simple_Shear": 6.659, "simple_Stretch": 3.147, "simple_Buckle": -13.211, "simple_Propeller": 6.836, "bp_simpleParams": [ 6.659, 3.147, 0.734, -13.211, 6.836, -174.952 ], "bp_params": [ -2.259, -7.010, 0.734, 14.017, 4.980, -174.918 ], "frame": { "rmsd": null, "origin": [ 224.089, 249.125, 110.091 ], "x_axis": [ 0.571, -0.789, -0.226 ], "y_axis": [ -0.565, -0.178, -0.806 ], "z_axis": [ 0.595, 0.588, -0.548 ], "quaternion": [ -0.460, 0.758, -0.447, 0.122 ] } }, { "index": 937, "nt1": "///A/2147", "nt2": "///A/2176", "bp": "U+A", "name": "--", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -163.744, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 35.406, "chi2": -155.677, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 88.425, "C1C1_dist": 7.480, "N1N9_dist": 6.580, "C6C8_dist": 8.339, "CNNC_torsion": 134.805, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)*N3[3.07],O4(carbonyl)-O2'(hydroxyl)[2.52]", "interBase_angle": 32.904, "planarity": 0.584, "simple_Shear": 5.244, "simple_Stretch": 1.487, "simple_Buckle": 26.043, "simple_Propeller": -20.110, "bp_simpleParams": [ 5.244, 1.487, 0.974, 26.043, -20.110, 115.905 ], "bp_params": [ 2.144, 5.012, 0.974, 31.989, 7.705, 113.967 ], "frame": { "rmsd": null, "origin": [ 236.446, 246.854, 120.308 ], "x_axis": [ 0.966, 0.138, 0.219 ], "y_axis": [ 0.258, -0.449, -0.855 ], "z_axis": [ -0.020, 0.883, -0.470 ], "quaternion": [ 0.512, -0.849, -0.117, -0.059 ] } }, { "index": 938, "nt1": "///A/2149", "nt2": "///A/2207", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 155.615, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.506, "chi2": -165.187, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.077, "C1C1_dist": 10.753, "N1N9_dist": 8.886, "C6C8_dist": 9.784, "CNNC_torsion": 4.110, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.84],N1(imino)-N3[2.82],N2(amino)-O2(carbonyl)[2.70]", "interBase_angle": 5.514, "planarity": 0.084, "simple_Shear": -0.108, "simple_Stretch": -0.226, "simple_Buckle": 2.859, "simple_Propeller": 4.715, "bp_simpleParams": [ -0.108, -0.226, -0.180, 2.859, 4.715, -0.626 ], "bp_params": [ -0.107, -0.226, -0.180, 2.833, 4.730, -0.626 ], "frame": { "rmsd": null, "origin": [ 216.712, 250.484, 125.905 ], "x_axis": [ 0.572, 0.813, -0.105 ], "y_axis": [ 0.696, -0.549, -0.462 ], "z_axis": [ -0.434, 0.192, -0.881 ], "quaternion": [ -0.189, 0.866, 0.435, -0.155 ] } }, { "index": 939, "nt1": "///A/2150", "nt2": "///A/2206", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 166.241, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.845, "chi2": 179.307, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.456, "C1C1_dist": 10.778, "N1N9_dist": 8.905, "C6C8_dist": 9.770, "CNNC_torsion": 10.649, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 15.572, "planarity": 0.248, "simple_Shear": -0.090, "simple_Stretch": -0.203, "simple_Buckle": 11.348, "simple_Propeller": 10.663, "bp_simpleParams": [ -0.090, -0.203, -0.455, 11.348, 10.663, -2.121 ], "bp_params": [ -0.090, -0.203, -0.455, 11.352, 10.659, -2.120 ], "frame": { "rmsd": null, "origin": [ 213.008, 251.376, 124.259 ], "x_axis": [ 0.932, 0.331, -0.147 ], "y_axis": [ 0.267, -0.902, -0.338 ], "z_axis": [ -0.245, 0.276, -0.929 ], "quaternion": [ -0.158, 0.970, 0.154, -0.101 ] } }, { "index": 940, "nt1": "///A/2151", "nt2": "///A/2205", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -98.328, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 85.407, "chi2": -156.101, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.408, "C1C1_dist": 8.524, "N1N9_dist": 7.554, "C6C8_dist": 8.436, "CNNC_torsion": 27.878, "hbonds_num": 1, "hbonds_desc": "N3(imino)-N1[3.19]", "interBase_angle": 79.499, "planarity": 0.753, "simple_Shear": 0.855, "simple_Stretch": 0.237, "simple_Buckle": 72.865, "simple_Propeller": 31.792, "bp_simpleParams": [ 0.855, 0.237, -3.100, 72.865, 31.792, 9.710 ], "bp_params": [ 0.882, 0.096, -3.100, 77.881, 15.956, 7.679 ], "frame": { "rmsd": null, "origin": [ 212.796, 252.476, 122.213 ], "x_axis": [ 0.939, -0.265, -0.219 ], "y_axis": [ -0.343, -0.667, -0.662 ], "z_axis": [ 0.029, 0.697, -0.717 ], "quaternion": [ -0.373, 0.911, -0.167, -0.052 ] } }, { "index": 941, "nt1": "///A/2156", "nt2": "///A/2190", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.858, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.609, "chi2": -165.004, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.309, "C1C1_dist": 10.599, "N1N9_dist": 8.804, "C6C8_dist": 9.670, "CNNC_torsion": 14.901, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.87],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 7.439, "planarity": 0.259, "simple_Shear": -0.041, "simple_Stretch": -0.414, "simple_Buckle": -5.993, "simple_Propeller": 4.407, "bp_simpleParams": [ -0.041, -0.414, -1.296, -5.993, 4.407, -2.876 ], "bp_params": [ -0.041, -0.414, -1.296, -5.996, 4.403, -2.874 ], "frame": { "rmsd": null, "origin": [ 227.801, 267.959, 107.614 ], "x_axis": [ 0.301, 0.656, -0.692 ], "y_axis": [ -0.877, 0.475, 0.069 ], "z_axis": [ 0.374, 0.586, 0.719 ], "quaternion": [ 0.790, -0.164, 0.337, 0.485 ] } }, { "index": 942, "nt1": "///A/2156", "nt2": "///A/2191", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": -158.858, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 43.260, "chi2": -166.378, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 132.170, "C1C1_dist": 7.885, "N1N9_dist": 7.797, "C6C8_dist": 9.324, "CNNC_torsion": 1.850, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)*N3[2.66]", "interBase_angle": 12.664, "planarity": 0.459, "simple_Shear": -4.989, "simple_Stretch": 2.666, "simple_Buckle": -7.665, "simple_Propeller": 10.081, "bp_simpleParams": [ -4.989, 2.666, 1.661, -7.665, 10.081, 67.643 ], "bp_params": [ -5.574, -0.962, 1.661, -12.240, 3.250, 67.362 ], "frame": { "rmsd": null, "origin": [ 229.286, 268.173, 104.744 ], "x_axis": [ 0.760, 0.280, -0.586 ], "y_axis": [ -0.529, 0.790, -0.310 ], "z_axis": [ 0.376, 0.546, 0.748 ], "quaternion": [ 0.908, -0.236, 0.265, 0.223 ] } }, { "index": 943, "nt1": "///A/2157", "nt2": "///A/2189", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.811, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.820, "chi2": 177.811, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.685, "C1C1_dist": 10.694, "N1N9_dist": 8.927, "C6C8_dist": 9.857, "CNNC_torsion": 6.796, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 10.267, "planarity": 0.139, "simple_Shear": 0.188, "simple_Stretch": -0.140, "simple_Buckle": 7.824, "simple_Propeller": 6.648, "bp_simpleParams": [ 0.188, -0.140, -0.309, 7.824, 6.648, 0.357 ], "bp_params": [ 0.185, -0.143, -0.309, 7.930, 6.521, 0.357 ], "frame": { "rmsd": null, "origin": [ 229.570, 271.331, 108.520 ], "x_axis": [ -0.150, 0.704, -0.695 ], "y_axis": [ -0.936, 0.125, 0.329 ], "z_axis": [ 0.318, 0.700, 0.640 ], "quaternion": [ 0.635, -0.146, 0.398, 0.645 ] } }, { "index": 944, "nt1": "///A/2158", "nt2": "///A/2188", "bp": "C-G", "name": "~Sheared", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -150.239, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 88.548, "chi2": -169.026, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 14.981, "C1C1_dist": 8.384, "N1N9_dist": 7.137, "C6C8_dist": 7.543, "CNNC_torsion": -149.024, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)*N7[2.99]", "interBase_angle": 42.871, "planarity": 0.575, "simple_Shear": 7.972, "simple_Stretch": 1.506, "simple_Buckle": 32.340, "simple_Propeller": -28.144, "bp_simpleParams": [ 7.972, 1.506, 1.076, 32.340, -28.144, -16.570 ], "bp_params": [ 5.921, -5.546, 1.076, -3.481, -42.730, -17.767 ], "frame": { "rmsd": null, "origin": [ 232.380, 275.954, 109.872 ], "x_axis": [ -0.594, 0.789, -0.155 ], "y_axis": [ -0.699, -0.412, 0.585 ], "z_axis": [ 0.398, 0.456, 0.796 ], "quaternion": [ 0.444, 0.073, 0.311, 0.837 ] } }, { "index": 945, "nt1": "///A/2159", "nt2": "///A/2187", "bp": "U-A", "name": "--", "Saenger": "--", "LW": ".SH", "DSSR": ".m-M", "intra_chain": true, "chi1": -112.413, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 114.002, "chi2": -61.631, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 35.048, "C1C1_dist": 7.527, "N1N9_dist": 7.038, "C6C8_dist": 8.202, "CNNC_torsion": 71.731, "hbonds_num": 2, "hbonds_desc": "O3'*N1[2.86],O2(carbonyl)-N6(amino)[2.23]", "interBase_angle": 58.611, "planarity": 0.793, "simple_Shear": 6.334, "simple_Stretch": 1.777, "simple_Buckle": -53.188, "simple_Propeller": 24.623, "bp_simpleParams": [ 6.334, 1.777, -2.334, -53.188, 24.623, 41.163 ], "bp_params": [ 5.934, -2.841, -2.334, -25.000, 53.011, 44.712 ], "frame": { "rmsd": null, "origin": [ 231.219, 278.769, 115.591 ], "x_axis": [ -0.640, 0.388, 0.663 ], "y_axis": [ -0.043, -0.880, 0.474 ], "z_axis": [ 0.767, 0.275, 0.580 ], "quaternion": [ 0.122, 0.406, 0.213, 0.880 ] } }, { "index": 946, "nt1": "///A/2160", "nt2": "///A/2186", "bp": "U-G", "name": "--", "Saenger": "--", "LW": ".SW", "DSSR": ".m-W", "intra_chain": true, "chi1": -70.235, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 97.346, "chi2": -167.514, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 64.237, "C1C1_dist": 8.396, "N1N9_dist": 8.162, "C6C8_dist": 10.042, "CNNC_torsion": 86.449, "hbonds_num": 5, "hbonds_desc": "OP1-O2'(hydroxyl)[2.82],OP1*N3[2.73],O5'-N2(amino)[2.54],O4'-N2(amino)[2.34],O2(carbonyl)-N2(amino)[3.08]", "interBase_angle": 72.017, "planarity": 0.942, "simple_Shear": 2.311, "simple_Stretch": 4.583, "simple_Buckle": -45.095, "simple_Propeller": 56.151, "bp_simpleParams": [ 2.311, 4.583, -0.935, -45.095, 56.151, 106.948 ], "bp_params": [ 3.899, 3.338, -0.935, -18.768, 69.529, 116.559 ], "frame": { "rmsd": null, "origin": [ 236.288, 277.755, 120.216 ], "x_axis": [ -0.233, 0.746, 0.624 ], "y_axis": [ -0.938, -0.342, 0.058 ], "z_axis": [ 0.257, -0.572, 0.779 ], "quaternion": [ 0.549, 0.287, -0.167, 0.767 ] } }, { "index": 947, "nt1": "///A/2161", "nt2": "///A/2168", "bp": "G+G", "name": "--", "Saenger": "--", "LW": "cHS", "DSSR": "cM+m", "intra_chain": true, "chi1": -52.423, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 76.516, "chi2": -175.805, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 90.506, "C1C1_dist": 6.075, "N1N9_dist": 5.996, "C6C8_dist": 6.014, "CNNC_torsion": 73.075, "hbonds_num": 1, "hbonds_desc": "N7-N2(amino)[2.23]", "interBase_angle": 59.109, "planarity": 0.842, "simple_Shear": 2.391, "simple_Stretch": 7.668, "simple_Buckle": -10.938, "simple_Propeller": 58.089, "bp_simpleParams": [ 2.391, 7.668, -0.282, -10.938, 58.089, -39.721 ], "bp_params": [ -6.724, -4.393, -0.282, -29.337, -51.316, -42.583 ], "frame": { "rmsd": null, "origin": [ 238.446, 265.916, 128.976 ], "x_axis": [ -0.477, -0.873, 0.104 ], "y_axis": [ 0.633, -0.423, -0.648 ], "z_axis": [ 0.610, -0.243, 0.754 ], "quaternion": [ -0.462, 0.219, -0.274, 0.815 ] } }, { "index": 948, "nt1": "///A/2162", "nt2": "///A/2165", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cHH", "DSSR": "cM-M", "intra_chain": true, "chi1": -44.907, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 78.111, "chi2": 165.520, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 25.123, "C1C1_dist": 9.461, "N1N9_dist": 7.875, "C6C8_dist": 6.164, "CNNC_torsion": -38.655, "hbonds_num": 1, "hbonds_desc": "N7-N6(amino)[2.97]", "interBase_angle": 59.327, "planarity": 0.660, "simple_Shear": 1.019, "simple_Stretch": 7.059, "simple_Buckle": -36.082, "simple_Propeller": 47.093, "bp_simpleParams": [ 1.019, 7.059, 0.328, -36.082, 47.093, 164.507 ], "bp_params": [ 4.913, -5.171, 0.328, 59.306, -1.591, 162.208 ], "frame": { "rmsd": null, "origin": [ 243.300, 270.826, 116.893 ], "x_axis": [ 0.200, 0.868, 0.455 ], "y_axis": [ 0.766, 0.152, -0.625 ], "z_axis": [ -0.611, 0.474, -0.634 ], "quaternion": [ -0.423, 0.649, 0.630, -0.060 ] } }, { "index": 949, "nt1": "///A/2162", "nt2": "///A/2183", "bp": "G+G", "name": "--", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": -44.907, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 60.648, "chi2": 83.646, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 78.500, "C1C1_dist": 9.439, "N1N9_dist": 8.773, "C6C8_dist": 10.867, "CNNC_torsion": -130.050, "hbonds_num": 3, "hbonds_desc": "N1(imino)-O3'[3.02],N2(amino)-O5'[2.37],N2(amino)-N3[2.56]", "interBase_angle": 51.032, "planarity": 0.809, "simple_Shear": 5.466, "simple_Stretch": 3.137, "simple_Buckle": 8.246, "simple_Propeller": 50.361, "bp_simpleParams": [ 5.466, 3.137, 2.416, 8.246, 50.361, 164.282 ], "bp_params": [ 1.024, 6.218, 2.416, -34.202, 37.874, 164.366 ], "frame": { "rmsd": null, "origin": [ 242.730, 271.003, 122.290 ], "x_axis": [ -0.137, 0.905, 0.402 ], "y_axis": [ 0.078, 0.415, -0.907 ], "z_axis": [ -0.987, -0.093, -0.128 ], "quaternion": [ 0.536, -0.379, -0.648, 0.386 ] } }, { "index": 950, "nt1": "///A/2164", "nt2": "///A/2185", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": 172.157, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 5.116, "chi2": -154.521, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 94.191, "C1C1_dist": 9.351, "N1N9_dist": 8.103, "C6C8_dist": 8.509, "CNNC_torsion": 154.763, "hbonds_num": 4, "hbonds_desc": "OP2-N2(amino)[3.05],N7-N2(amino)[2.81],N6(amino)-O2'(hydroxyl)[2.92],N6(amino)-N3[2.87]", "interBase_angle": 12.486, "planarity": 0.257, "simple_Shear": -7.450, "simple_Stretch": 2.134, "simple_Buckle": -6.018, "simple_Propeller": 10.940, "bp_simpleParams": [ -7.450, 2.134, -1.014, -6.018, 10.940, -6.022 ], "bp_params": [ -6.438, -4.315, -1.014, -12.239, 2.474, -5.990 ], "frame": { "rmsd": null, "origin": [ 241.685, 269.864, 112.840 ], "x_axis": [ -0.436, 0.675, 0.596 ], "y_axis": [ -0.830, -0.557, 0.023 ], "z_axis": [ 0.347, -0.484, 0.803 ], "quaternion": [ 0.450, 0.282, -0.138, 0.836 ] } }, { "index": 951, "nt1": "///A/2165", "nt2": "///A/2185", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cHS", "DSSR": "cM-m", "intra_chain": true, "chi1": 165.520, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 31.451, "chi2": -154.521, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 110.839, "C1C1_dist": 8.934, "N1N9_dist": 8.220, "C6C8_dist": 9.261, "CNNC_torsion": -7.999, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[2.62]", "interBase_angle": 17.767, "planarity": 0.526, "simple_Shear": -5.939, "simple_Stretch": 1.877, "simple_Buckle": -0.936, "simple_Propeller": 17.743, "bp_simpleParams": [ -5.939, 1.877, 1.825, -0.936, 17.743, 37.987 ], "bp_params": [ -5.753, -2.387, 1.825, -12.131, 12.982, 38.018 ], "frame": { "rmsd": null, "origin": [ 241.779, 269.799, 114.740 ], "x_axis": [ -0.733, 0.441, 0.517 ], "y_axis": [ -0.610, -0.763, -0.215 ], "z_axis": [ 0.300, -0.473, 0.828 ], "quaternion": [ 0.288, 0.224, -0.189, 0.912 ] } }, { "index": 952, "nt1": "///A/2167", "nt2": "///A/2182", "bp": "C-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -177.279, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 89.506, "chi2": -113.881, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 86.557, "C1C1_dist": 10.254, "N1N9_dist": 10.243, "C6C8_dist": 12.448, "CNNC_torsion": 54.957, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N2(amino)[3.77]", "interBase_angle": 62.235, "planarity": 0.837, "simple_Shear": 1.168, "simple_Stretch": 5.619, "simple_Buckle": -36.867, "simple_Propeller": 50.140, "bp_simpleParams": [ 1.168, 5.619, -1.311, -36.867, 50.140, 86.515 ], "bp_params": [ 1.691, 5.485, -1.311, -31.113, 53.900, 90.969 ], "frame": { "rmsd": null, "origin": [ 239.968, 260.848, 122.788 ], "x_axis": [ -0.309, -0.888, -0.341 ], "y_axis": [ 0.835, -0.082, -0.544 ], "z_axis": [ 0.455, -0.453, 0.767 ], "quaternion": [ 0.586, -0.039, 0.339, -0.735 ] } }, { "index": 953, "nt1": "///A/2168", "nt2": "///A/2181", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.805, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.947, "chi2": -166.180, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.620, "C1C1_dist": 10.498, "N1N9_dist": 8.818, "C6C8_dist": 9.804, "CNNC_torsion": 1.239, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.83],N2(amino)-O2(carbonyl)[2.65]", "interBase_angle": 12.292, "planarity": 0.136, "simple_Shear": -0.146, "simple_Stretch": -0.170, "simple_Buckle": -12.120, "simple_Propeller": -2.044, "bp_simpleParams": [ -0.146, -0.170, -0.402, -12.120, -2.044, 2.091 ], "bp_params": [ -0.144, -0.172, -0.402, -12.102, -2.153, 2.079 ], "frame": { "rmsd": null, "origin": [ 238.386, 261.839, 128.136 ], "x_axis": [ -0.363, -0.833, -0.417 ], "y_axis": [ 0.929, -0.292, -0.226 ], "z_axis": [ 0.067, -0.469, 0.880 ], "quaternion": [ 0.554, 0.110, 0.218, -0.796 ] } }, { "index": 954, "nt1": "///A/2169", "nt2": "///A/2179", "bp": "G-U", "name": "sWobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.039, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.929, "chi2": -169.579, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 27.654, "C1C1_dist": 11.866, "N1N9_dist": 9.681, "C6C8_dist": 10.034, "CNNC_torsion": -12.041, "hbonds_num": 2, "hbonds_desc": "N1(imino)-O4(carbonyl)[2.48],N2(amino)*N3(imino)[3.34]", "interBase_angle": 17.190, "planarity": 0.197, "simple_Shear": 2.218, "simple_Stretch": 0.547, "simple_Buckle": -1.171, "simple_Propeller": -17.150, "bp_simpleParams": [ 2.218, 0.547, -0.336, -1.171, -17.150, -25.514 ], "bp_params": [ 2.285, 0.015, -0.336, -5.129, -16.407, -25.744 ], "frame": { "rmsd": null, "origin": [ 236.826, 257.089, 127.180 ], "x_axis": [ 0.732, -0.196, -0.652 ], "y_axis": [ 0.677, 0.309, 0.668 ], "z_axis": [ 0.071, -0.931, 0.359 ], "quaternion": [ 0.775, 0.516, 0.234, -0.282 ] } }, { "index": 955, "nt1": "///A/2169", "nt2": "///A/2180", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.039, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 70.209, "chi2": -93.302, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 60.344, "C1C1_dist": 10.243, "N1N9_dist": 9.021, "C6C8_dist": 10.110, "CNNC_torsion": -7.038, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O2(carbonyl)[3.37]", "interBase_angle": 62.376, "planarity": 0.774, "simple_Shear": 0.376, "simple_Stretch": 1.543, "simple_Buckle": -59.213, "simple_Propeller": -19.611, "bp_simpleParams": [ 0.376, 1.543, -0.115, -59.213, -19.611, 15.582 ], "bp_params": [ 0.505, 1.506, -0.115, -61.009, -12.989, 13.561 ], "frame": { "rmsd": null, "origin": [ 236.926, 257.254, 126.158 ], "x_axis": [ 0.490, -0.320, -0.811 ], "y_axis": [ 0.774, -0.268, 0.574 ], "z_axis": [ -0.401, -0.909, 0.116 ], "quaternion": [ 0.579, 0.641, 0.177, -0.473 ] } }, { "index": 956, "nt1": "///A/2170", "nt2": "///A/2178", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "..W", "DSSR": "..-W", "intra_chain": true, "chi1": 177.637, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 17.253, "chi2": -176.959, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 31.700, "C1C1_dist": 12.429, "N1N9_dist": 9.768, "C6C8_dist": 9.314, "CNNC_torsion": 31.277, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[3.04]", "interBase_angle": 9.215, "planarity": 0.284, "simple_Shear": -1.689, "simple_Stretch": 0.707, "simple_Buckle": 3.770, "simple_Propeller": -8.409, "bp_simpleParams": [ -1.689, 0.707, -1.431, 3.770, -8.409, -57.906 ], "bp_params": [ -1.796, 0.355, -1.431, 5.371, -7.488, -57.957 ], "frame": { "rmsd": null, "origin": [ 236.024, 254.174, 127.522 ], "x_axis": [ 0.871, 0.116, -0.478 ], "y_axis": [ 0.454, 0.183, 0.872 ], "z_axis": [ 0.189, -0.976, 0.107 ], "quaternion": [ 0.735, 0.629, 0.227, -0.115 ] } }, { "index": 957, "nt1": "///A/2170", "nt2": "///A/2179", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 177.637, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 38.803, "chi2": -169.579, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 44.949, "C1C1_dist": 10.817, "N1N9_dist": 8.631, "C6C8_dist": 8.947, "CNNC_torsion": -32.587, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.59],N1-N3(imino)[3.23]", "interBase_angle": 8.163, "planarity": 0.462, "simple_Shear": -0.619, "simple_Stretch": -0.971, "simple_Buckle": 7.337, "simple_Propeller": 3.578, "bp_simpleParams": [ -0.619, -0.971, 2.205, 7.337, 3.578, -24.937 ], "bp_params": [ -0.558, -1.007, 2.205, 7.105, 4.020, -24.906 ], "frame": { "rmsd": null, "origin": [ 235.592, 255.977, 128.005 ], "x_axis": [ 0.717, -0.024, -0.697 ], "y_axis": [ 0.685, 0.207, 0.698 ], "z_axis": [ 0.128, -0.978, 0.165 ], "quaternion": [ 0.723, 0.580, 0.285, -0.245 ] } }, { "index": 958, "nt1": "///A/2171", "nt2": "///A/2177", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -154.773, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 41.259, "chi2": -144.431, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 65.803, "C1C1_dist": 12.868, "N1N9_dist": 11.166, "C6C8_dist": 11.821, "CNNC_torsion": 19.624, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N1(imino)[3.52],O6(carbonyl)-N2(amino)[3.48],N1(imino)*N2(amino)[2.95]", "unusual_base2base_hbonds": 1, "interBase_angle": 11.621, "planarity": 0.355, "simple_Shear": -2.405, "simple_Stretch": 2.157, "simple_Buckle": 11.108, "simple_Propeller": 3.416, "bp_simpleParams": [ -2.405, 2.157, -1.629, 11.108, 3.416, -6.905 ], "bp_params": [ -2.858, 1.508, -1.629, 9.949, 6.005, -6.888 ], "frame": { "rmsd": null, "origin": [ 238.675, 251.342, 125.923 ], "x_axis": [ 0.995, 0.096, 0.016 ], "y_axis": [ -0.025, 0.094, 0.995 ], "z_axis": [ 0.094, -0.991, 0.096 ], "quaternion": [ 0.739, 0.672, 0.026, 0.041 ] } }, { "index": 959, "nt1": "///A/2171", "nt2": "///A/2178", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -154.773, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.358, "chi2": -176.959, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.392, "C1C1_dist": 10.451, "N1N9_dist": 8.694, "C6C8_dist": 9.566, "CNNC_torsion": -21.309, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.83],N1(imino)-N3[2.84],N2(amino)-O2(carbonyl)[2.68]", "interBase_angle": 9.307, "planarity": 0.308, "simple_Shear": -0.002, "simple_Stretch": -0.535, "simple_Buckle": 6.292, "simple_Propeller": -6.857, "bp_simpleParams": [ -0.002, -0.535, 1.465, 6.292, -6.857, -2.848 ], "bp_params": [ -0.002, -0.535, 1.465, 6.284, -6.865, -2.848 ], "frame": { "rmsd": null, "origin": [ 237.009, 252.815, 126.793 ], "x_axis": [ 0.978, 0.207, -0.024 ], "y_axis": [ 0.010, 0.067, 0.998 ], "z_axis": [ 0.208, -0.976, 0.063 ], "quaternion": [ 0.726, 0.680, 0.080, 0.068 ] } }, { "index": 960, "nt1": "///A/2172", "nt2": "///A/2177", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.623, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.246, "chi2": -144.431, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.436, "C1C1_dist": 10.168, "N1N9_dist": 8.617, "C6C8_dist": 9.653, "CNNC_torsion": -6.682, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.67],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 16.383, "planarity": 0.395, "simple_Shear": 0.221, "simple_Stretch": -0.312, "simple_Buckle": 16.109, "simple_Propeller": 2.981, "bp_simpleParams": [ 0.221, -0.312, 0.914, 16.109, 2.981, 5.230 ], "bp_params": [ 0.215, -0.316, 0.914, 16.166, 2.652, 5.180 ], "frame": { "rmsd": null, "origin": [ 240.356, 250.151, 125.150 ], "x_axis": [ 0.989, 0.086, 0.124 ], "y_axis": [ -0.127, 0.034, 0.991 ], "z_axis": [ 0.081, -0.996, 0.044 ], "quaternion": [ 0.719, 0.691, -0.015, 0.074 ] } }, { "index": 961, "nt1": "///A/2173", "nt2": "///A/2176", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -160.109, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 100.705, "chi2": -155.677, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 30.729, "C1C1_dist": 6.779, "N1N9_dist": 6.054, "C6C8_dist": 6.618, "CNNC_torsion": -116.044, "hbonds_num": 1, "hbonds_desc": "N3*N7[2.90]", "interBase_angle": 58.860, "planarity": 0.779, "simple_Shear": 8.546, "simple_Stretch": 2.058, "simple_Buckle": 58.801, "simple_Propeller": 2.617, "bp_simpleParams": [ 8.546, 2.058, 2.043, 58.801, 2.617, -4.830 ], "bp_params": [ 5.980, -6.442, 2.043, 30.883, -50.107, -5.177 ], "frame": { "rmsd": null, "origin": [ 238.969, 247.259, 124.100 ], "x_axis": [ 0.375, 0.286, 0.882 ], "y_axis": [ -0.921, 0.006, 0.389 ], "z_axis": [ 0.106, -0.958, 0.265 ], "quaternion": [ 0.641, 0.525, -0.302, 0.470 ] } }, { "index": 962, "nt1": "///A/2198", "nt2": "///A/2199", "bp": "G-G", "name": "Platform", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": 83.930, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 118.463, "chi2": -51.241, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 76.048, "C1C1_dist": 7.137, "N1N9_dist": 7.609, "C6C8_dist": 9.860, "CNNC_torsion": 56.656, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N2(amino)[3.05],N2(amino)*N1(imino)[2.83]", "interBase_angle": 37.419, "planarity": 0.678, "simple_Shear": 1.380, "simple_Stretch": 4.799, "simple_Buckle": 3.735, "simple_Propeller": 37.232, "bp_simpleParams": [ 1.380, 4.799, 0.776, 3.735, 37.232, 121.974 ], "bp_params": [ 2.825, 4.118, 0.776, 15.177, 34.203, 123.706 ], "frame": { "rmsd": null, "origin": [ 221.336, 240.079, 114.397 ], "x_axis": [ 0.531, -0.644, 0.550 ], "y_axis": [ -0.830, -0.525, 0.186 ], "z_axis": [ 0.169, -0.556, -0.814 ], "quaternion": [ 0.219, 0.847, -0.435, 0.212 ] } }, { "index": 963, "nt1": "///A/2226", "nt2": "///A/2254", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -164.471, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 35.872, "chi2": -126.046, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 19.418, "C1C1_dist": 10.158, "N1N9_dist": 7.692, "C6C8_dist": 6.841, "CNNC_torsion": 151.786, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.23],N3(imino)-N7[3.41]", "interBase_angle": 23.016, "planarity": 0.335, "simple_Shear": 4.491, "simple_Stretch": 1.783, "simple_Buckle": -3.324, "simple_Propeller": -22.775, "bp_simpleParams": [ 4.491, 1.783, -0.063, -3.324, -22.775, -93.755 ], "bp_params": [ 4.495, -1.773, -0.063, -17.981, -14.368, -93.498 ], "frame": { "rmsd": null, "origin": [ 212.283, 248.141, 178.493 ], "x_axis": [ 0.924, 0.076, 0.374 ], "y_axis": [ -0.202, 0.929, 0.309 ], "z_axis": [ -0.324, -0.361, 0.874 ], "quaternion": [ 0.965, 0.173, -0.181, 0.072 ] } }, { "index": 964, "nt1": "///A/2228", "nt2": "///A/2253", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": 172.984, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 7.794, "chi2": -173.744, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 86.855, "C1C1_dist": 9.603, "N1N9_dist": 8.224, "C6C8_dist": 8.312, "CNNC_torsion": -160.602, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[2.42],N6(amino)-O2'(hydroxyl)[3.12]", "interBase_angle": 4.933, "planarity": 0.183, "simple_Shear": -7.848, "simple_Stretch": 2.824, "simple_Buckle": 3.285, "simple_Propeller": 3.680, "bp_simpleParams": [ -7.848, 2.824, 0.862, 3.285, 3.680, -27.115 ], "bp_params": [ -6.792, -4.841, 0.862, -1.153, 4.796, -27.136 ], "frame": { "rmsd": null, "origin": [ 213.242, 246.544, 181.870 ], "x_axis": [ 0.739, 0.358, 0.571 ], "y_axis": [ -0.468, 0.882, 0.052 ], "z_axis": [ -0.485, -0.306, 0.819 ], "quaternion": [ 0.927, 0.097, -0.285, 0.223 ] } }, { "index": 965, "nt1": "///A/2229", "nt2": "///A/2252", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.394, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 46.178, "chi2": -176.810, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 71.942, "C1C1_dist": 11.509, "N1N9_dist": 10.035, "C6C8_dist": 11.177, "CNNC_torsion": -6.669, "hbonds_num": 1, "hbonds_desc": "N4(amino)-N1[3.73]", "interBase_angle": 7.057, "planarity": 0.096, "simple_Shear": -2.080, "simple_Stretch": 1.511, "simple_Buckle": -7.034, "simple_Propeller": -0.563, "bp_simpleParams": [ -2.080, 1.511, 0.487, -7.034, -0.563, 11.202 ], "bp_params": [ -2.357, 1.026, 0.487, -6.747, -2.068, 11.185 ], "frame": { "rmsd": null, "origin": [ 213.427, 244.660, 185.347 ], "x_axis": [ 0.233, 0.913, 0.334 ], "y_axis": [ -0.871, 0.349, -0.346 ], "z_axis": [ -0.432, -0.211, 0.877 ], "quaternion": [ 0.784, -0.043, -0.244, 0.569 ] } }, { "index": 966, "nt1": "///A/2230", "nt2": "///A/2251", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 173.319, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.537, "chi2": -162.183, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.370, "C1C1_dist": 10.686, "N1N9_dist": 8.904, "C6C8_dist": 9.832, "CNNC_torsion": -10.423, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 3.434, "planarity": 0.161, "simple_Shear": 0.125, "simple_Stretch": -0.204, "simple_Buckle": -2.552, "simple_Propeller": 2.298, "bp_simpleParams": [ 0.125, -0.204, 0.761, -2.552, 2.298, 1.130 ], "bp_params": [ 0.123, -0.205, 0.761, -2.533, 2.318, 1.130 ], "frame": { "rmsd": null, "origin": [ 213.454, 243.913, 188.841 ], "x_axis": [ -0.287, 0.957, 0.039 ], "y_axis": [ -0.830, -0.227, -0.509 ], "z_axis": [ -0.478, -0.179, 0.860 ], "quaternion": [ 0.580, -0.142, -0.223, 0.770 ] } }, { "index": 967, "nt1": "///A/2231", "nt2": "///A/2250", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 179.897, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.709, "chi2": -170.356, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.590, "C1C1_dist": 10.502, "N1N9_dist": 8.815, "C6C8_dist": 9.803, "CNNC_torsion": -4.344, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.71],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 6.533, "planarity": 0.227, "simple_Shear": 0.156, "simple_Stretch": -0.228, "simple_Buckle": 5.533, "simple_Propeller": 3.475, "bp_simpleParams": [ 0.156, -0.228, 0.713, 5.533, 3.475, 2.776 ], "bp_params": [ 0.153, -0.230, 0.713, 5.576, 3.405, 2.774 ], "frame": { "rmsd": null, "origin": [ 213.274, 244.316, 192.203 ], "x_axis": [ -0.635, 0.699, -0.329 ], "y_axis": [ -0.567, -0.711, -0.416 ], "z_axis": [ -0.525, -0.077, 0.848 ], "quaternion": [ 0.354, -0.239, -0.138, 0.893 ] } }, { "index": 968, "nt1": "///A/2233", "nt2": "///A/2249", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.576, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.556, "chi2": 171.283, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.807, "C1C1_dist": 10.616, "N1N9_dist": 8.809, "C6C8_dist": 9.717, "CNNC_torsion": -9.208, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.86]", "interBase_angle": 3.961, "planarity": 0.223, "simple_Shear": 0.151, "simple_Stretch": -0.327, "simple_Buckle": 3.698, "simple_Propeller": -1.417, "bp_simpleParams": [ 0.151, -0.327, 0.846, 3.698, -1.417, -0.585 ], "bp_params": [ 0.147, -0.328, 0.846, 3.684, -1.454, -0.585 ], "frame": { "rmsd": null, "origin": [ 213.565, 245.040, 196.399 ], "x_axis": [ -0.845, -0.024, -0.534 ], "y_axis": [ 0.056, -0.997, -0.045 ], "z_axis": [ -0.532, -0.068, 0.844 ], "quaternion": [ -0.021, -0.278, -0.029, 0.960 ] } }, { "index": 969, "nt1": "///A/2234", "nt2": "///A/2248", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.533, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.861, "chi2": 175.112, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 47.487, "C1C1_dist": 10.694, "N1N9_dist": 8.753, "C6C8_dist": 9.567, "CNNC_torsion": -17.601, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.84],N4(amino)-O6(carbonyl)[2.78]", "interBase_angle": 8.280, "planarity": 0.290, "simple_Shear": 0.168, "simple_Stretch": -0.465, "simple_Buckle": 5.816, "simple_Propeller": -5.893, "bp_simpleParams": [ 0.168, -0.465, 1.027, 5.816, -5.893, -4.458 ], "bp_params": [ 0.163, -0.467, 1.027, 5.754, -5.953, -4.458 ], "frame": { "rmsd": null, "origin": [ 211.962, 246.705, 199.195 ], "x_axis": [ -0.637, -0.560, -0.530 ], "y_axis": [ 0.546, -0.813, 0.202 ], "z_axis": [ -0.544, -0.161, 0.823 ], "quaternion": [ -0.306, -0.297, 0.011, 0.905 ] } }, { "index": 970, "nt1": "///A/2235", "nt2": "///A/2247", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 172.402, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.283, "chi2": 177.453, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.738, "C1C1_dist": 10.843, "N1N9_dist": 8.926, "C6C8_dist": 9.800, "CNNC_torsion": -2.017, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.86],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 4.975, "planarity": 0.100, "simple_Shear": -0.160, "simple_Stretch": -0.208, "simple_Buckle": 0.881, "simple_Propeller": 4.896, "bp_simpleParams": [ -0.160, -0.208, 0.354, 0.881, 4.896, -1.075 ], "bp_params": [ -0.158, -0.210, 0.354, 0.828, 4.905, -1.075 ], "frame": { "rmsd": null, "origin": [ 208.686, 248.014, 200.847 ], "x_axis": [ -0.172, -0.860, -0.481 ], "y_axis": [ 0.760, -0.427, 0.490 ], "z_axis": [ -0.626, -0.281, 0.727 ], "quaternion": [ 0.531, 0.363, -0.068, -0.763 ] } }, { "index": 971, "nt1": "///A/2236", "nt2": "///A/2246", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.361, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.336, "chi2": -164.505, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.777, "C1C1_dist": 10.691, "N1N9_dist": 8.939, "C6C8_dist": 9.886, "CNNC_torsion": 5.902, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.78],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 8.377, "planarity": 0.113, "simple_Shear": 0.209, "simple_Stretch": -0.125, "simple_Buckle": 3.731, "simple_Propeller": 7.500, "bp_simpleParams": [ 0.209, -0.125, -0.102, 3.731, 7.500, 0.652 ], "bp_params": [ 0.207, -0.129, -0.102, 3.859, 7.435, 0.653 ], "frame": { "rmsd": null, "origin": [ 205.193, 247.733, 202.224 ], "x_axis": [ 0.318, -0.938, -0.137 ], "y_axis": [ 0.704, 0.137, 0.697 ], "z_axis": [ -0.635, -0.318, 0.704 ], "quaternion": [ 0.735, 0.345, -0.170, -0.559 ] } }, { "index": 972, "nt1": "///A/2237", "nt2": "///A/2245", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.107, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.076, "chi2": -175.775, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.737, "C1C1_dist": 10.500, "N1N9_dist": 8.846, "C6C8_dist": 9.825, "CNNC_torsion": 6.261, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 14.727, "planarity": 0.184, "simple_Shear": 0.145, "simple_Stretch": -0.130, "simple_Buckle": 13.622, "simple_Propeller": 5.597, "bp_simpleParams": [ 0.145, -0.130, -0.403, 13.622, 5.597, 1.667 ], "bp_params": [ 0.143, -0.132, -0.403, 13.702, 5.398, 1.657 ], "frame": { "rmsd": null, "origin": [ 202.494, 245.781, 203.046 ], "x_axis": [ 0.702, -0.674, 0.228 ], "y_axis": [ 0.367, 0.618, 0.695 ], "z_axis": [ -0.610, -0.404, 0.681 ], "quaternion": [ 0.866, 0.317, -0.242, -0.301 ] } }, { "index": 973, "nt1": "///A/2238", "nt2": "///A/2244", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -143.339, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.923, "chi2": -179.970, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.199, "C1C1_dist": 10.685, "N1N9_dist": 8.894, "C6C8_dist": 9.736, "CNNC_torsion": 5.633, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.84],N3-N1(imino)[2.93],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 23.864, "planarity": 0.268, "simple_Shear": 0.156, "simple_Stretch": -0.099, "simple_Buckle": 23.716, "simple_Propeller": -2.657, "bp_simpleParams": [ 0.156, -0.099, -0.808, 23.716, -2.657, -2.346 ], "bp_params": [ 0.155, -0.100, -0.808, 23.698, -2.812, -2.296 ], "frame": { "rmsd": null, "origin": [ 200.179, 243.124, 203.934 ], "x_axis": [ 0.798, -0.293, 0.526 ], "y_axis": [ -0.090, 0.805, 0.586 ], "z_axis": [ -0.595, -0.515, 0.617 ], "quaternion": [ 0.897, 0.307, -0.312, -0.057 ] } }, { "index": 974, "nt1": "///A/2239", "nt2": "///A/2244", "bp": "U+G", "name": "rWobble", "Saenger": "27-XXVII", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -142.271, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 14.582, "chi2": -179.970, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 38.074, "C1C1_dist": 11.696, "N1N9_dist": 9.184, "C6C8_dist": 9.212, "CNNC_torsion": 123.532, "hbonds_num": 2, "hbonds_desc": "O4(carbonyl)-N1(imino)[2.49],O4(carbonyl)-N2(amino)[3.19]", "interBase_angle": 39.942, "planarity": 0.757, "simple_Shear": -1.937, "simple_Stretch": -0.010, "simple_Buckle": -39.536, "simple_Propeller": -5.680, "bp_simpleParams": [ -1.937, -0.010, -1.719, -39.536, -5.680, 156.308 ], "bp_params": [ 0.372, -1.901, -1.719, 12.762, -37.848, 157.404 ], "frame": { "rmsd": null, "origin": [ 200.129, 242.173, 205.152 ], "x_axis": [ 0.339, -0.774, -0.535 ], "y_axis": [ -0.735, 0.138, -0.664 ], "z_axis": [ 0.587, 0.618, -0.522 ], "quaternion": [ -0.488, 0.656, -0.575, 0.020 ] } }, { "index": 975, "nt1": "///A/2289", "nt2": "///A/2309", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -108.703, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 53.451, "chi2": 173.259, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.057, "C1C1_dist": 10.697, "N1N9_dist": 8.938, "C6C8_dist": 9.877, "CNNC_torsion": 2.777, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 0.547, "planarity": 0.017, "simple_Shear": 0.146, "simple_Stretch": -0.150, "simple_Buckle": 0.405, "simple_Propeller": 0.368, "bp_simpleParams": [ 0.146, -0.150, 0.030, 0.405, 0.368, 0.196 ], "bp_params": [ 0.145, -0.151, 0.030, 0.408, 0.364, 0.196 ], "frame": { "rmsd": null, "origin": [ 199.231, 177.492, 130.223 ], "x_axis": [ 0.499, -0.595, 0.631 ], "y_axis": [ -0.511, 0.386, 0.768 ], "z_axis": [ -0.700, -0.705, -0.112 ], "quaternion": [ 0.666, 0.553, -0.500, -0.031 ] } }, { "index": 976, "nt1": "///A/2290", "nt2": "///A/2308", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.756, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.966, "chi2": 177.750, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.677, "C1C1_dist": 10.779, "N1N9_dist": 8.916, "C6C8_dist": 9.783, "CNNC_torsion": -13.617, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.86]", "interBase_angle": 6.049, "planarity": 0.168, "simple_Shear": 0.120, "simple_Stretch": -0.253, "simple_Buckle": -0.757, "simple_Propeller": -6.001, "bp_simpleParams": [ 0.120, -0.253, 0.709, -0.757, -6.001, -2.449 ], "bp_params": [ 0.118, -0.254, 0.709, -0.801, -5.995, -2.453 ], "frame": { "rmsd": null, "origin": [ 197.364, 174.841, 129.033 ], "x_axis": [ 0.139, -0.257, 0.956 ], "y_axis": [ -0.615, 0.734, 0.287 ], "z_axis": [ -0.776, -0.628, -0.056 ], "quaternion": [ 0.674, 0.340, -0.643, 0.133 ] } }, { "index": 977, "nt1": "///A/2295", "nt2": "///A/2301", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": -40.610, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 31.139, "chi2": -126.043, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 130.256, "C1C1_dist": 8.136, "N1N9_dist": 7.859, "C6C8_dist": 9.115, "CNNC_torsion": 27.429, "hbonds_num": 3, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.18],N6(amino)-O2(carbonyl)[2.29],N1-O2'(hydroxyl)[2.17]", "interBase_angle": 15.573, "planarity": 0.322, "simple_Shear": -6.086, "simple_Stretch": 2.330, "simple_Buckle": 1.007, "simple_Propeller": 15.540, "bp_simpleParams": [ -6.086, 2.330, -1.786, 1.007, 15.540, 47.810 ], "bp_params": [ -6.086, -2.331, -1.786, -9.634, 12.235, 47.904 ], "frame": { "rmsd": null, "origin": [ 184.462, 164.189, 131.188 ], "x_axis": [ 0.456, 0.858, -0.237 ], "y_axis": [ -0.107, -0.211, -0.972 ], "z_axis": [ -0.884, 0.468, -0.004 ], "quaternion": [ 0.557, -0.646, -0.290, 0.433 ] } }, { "index": 978, "nt1": "///A/2305", "nt2": "///A/2306", "bp": "G+G", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -178.479, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 91.685, "chi2": 177.256, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.447, "C1C1_dist": 6.433, "N1N9_dist": 5.656, "C6C8_dist": 5.119, "CNNC_torsion": -28.996, "hbonds_num": 1, "hbonds_desc": "N1(imino)-O6(carbonyl)[2.68]", "interBase_angle": 45.832, "planarity": 0.837, "simple_Shear": -0.218, "simple_Stretch": 4.031, "simple_Buckle": 37.176, "simple_Propeller": -26.805, "bp_simpleParams": [ -0.218, 4.031, -1.765, 37.176, -26.805, -5.865 ], "bp_params": [ 3.573, 1.878, -1.765, -8.482, -45.040, -6.334 ], "frame": { "rmsd": null, "origin": [ 193.413, 163.796, 129.347 ], "x_axis": [ -0.618, 0.718, 0.321 ], "y_axis": [ 0.205, -0.247, 0.947 ], "z_axis": [ 0.759, 0.651, 0.006 ], "quaternion": [ 0.188, 0.395, 0.584, 0.684 ] } }, { "index": 979, "nt1": "///A/2308", "nt2": "///A/2416", "bp": "G+U", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": 177.750, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 80.877, "chi2": -139.093, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.290, "C1C1_dist": 9.607, "N1N9_dist": 8.805, "C6C8_dist": 10.916, "CNNC_torsion": 161.203, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O2(carbonyl)[2.65]", "interBase_angle": 15.553, "planarity": 0.227, "simple_Shear": 5.613, "simple_Stretch": 3.252, "simple_Buckle": -2.537, "simple_Propeller": -15.344, "bp_simpleParams": [ 5.613, 3.252, -0.337, -2.537, -15.344, -143.800 ], "bp_params": [ -0.750, -6.443, -0.337, -10.792, 11.199, -143.811 ], "frame": { "rmsd": null, "origin": [ 198.276, 175.142, 125.867 ], "x_axis": [ 0.716, -0.696, 0.052 ], "y_axis": [ 0.105, 0.034, -0.994 ], "z_axis": [ 0.690, 0.717, 0.098 ], "quaternion": [ 0.680, -0.629, 0.235, -0.295 ] } }, { "index": 980, "nt1": "///A/2315", "nt2": "///A/2317", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -96.928, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 109.488, "chi2": -32.198, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 20.492, "C1C1_dist": 9.941, "N1N9_dist": 9.085, "C6C8_dist": 9.546, "CNNC_torsion": -0.132, "hbonds_num": 1, "hbonds_desc": "N3-N6(amino)[3.03]", "interBase_angle": 70.006, "planarity": 0.895, "simple_Shear": 0.435, "simple_Stretch": 5.788, "simple_Buckle": 11.862, "simple_Propeller": -68.994, "bp_simpleParams": [ 0.435, 5.788, 1.653, 11.862, -68.994, -43.586 ], "bp_params": [ 5.661, -1.285, 1.653, -70.006, -0.116, -36.268 ], "frame": { "rmsd": null, "origin": [ 204.301, 181.507, 105.348 ], "x_axis": [ 0.061, -0.327, 0.943 ], "y_axis": [ -0.471, 0.823, 0.316 ], "z_axis": [ -0.880, -0.464, -0.104 ], "quaternion": [ 0.667, 0.292, -0.683, 0.054 ] } }, { "index": 981, "nt1": "///A/2320", "nt2": "///A/2370", "bp": "U+G", "name": "--", "Saenger": "--", "LW": ".WH", "DSSR": ".W+M", "intra_chain": true, "chi1": -123.851, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 32.893, "chi2": 81.568, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 61.448, "C1C1_dist": 8.351, "N1N9_dist": 6.464, "C6C8_dist": 5.675, "CNNC_torsion": 51.741, "hbonds_num": 1, "hbonds_desc": "N3(imino)-N7[3.16]", "interBase_angle": 45.480, "planarity": 0.749, "simple_Shear": -5.317, "simple_Stretch": 0.000, "simple_Buckle": -40.901, "simple_Propeller": 19.888, "bp_simpleParams": [ -5.317, 0.000, -1.915, -40.901, 19.888, -99.778 ], "bp_params": [ -3.820, 3.698, -1.915, -16.139, 42.520, -103.160 ], "frame": { "rmsd": null, "origin": [ 195.609, 189.789, 93.896 ], "x_axis": [ 0.593, -0.684, 0.426 ], "y_axis": [ -0.795, -0.412, 0.444 ], "z_axis": [ -0.128, -0.602, -0.788 ], "quaternion": [ 0.313, 0.836, -0.442, 0.089 ] } }, { "index": 982, "nt1": "///A/2320", "nt2": "///A/2371", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -123.851, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 35.257, "chi2": -110.111, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 62.605, "C1C1_dist": 9.879, "N1N9_dist": 8.019, "C6C8_dist": 8.465, "CNNC_torsion": -12.697, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N4(amino)[3.06]", "interBase_angle": 60.617, "planarity": 0.628, "simple_Shear": -2.457, "simple_Stretch": -0.466, "simple_Buckle": -34.872, "simple_Propeller": 49.582, "bp_simpleParams": [ -2.457, -0.466, 1.762, -34.872, 49.582, -16.313 ], "bp_params": [ -2.157, -1.266, 1.762, -48.921, 35.793, -15.763 ], "frame": { "rmsd": null, "origin": [ 194.247, 190.524, 95.630 ], "x_axis": [ 0.948, -0.302, -0.100 ], "y_axis": [ -0.197, -0.805, 0.560 ], "z_axis": [ -0.249, -0.511, -0.823 ], "quaternion": [ 0.283, 0.945, -0.132, -0.092 ] } }, { "index": 983, "nt1": "///A/2321", "nt2": "///A/2370", "bp": "U+G", "name": "~Hoogsteen", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -145.717, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 59.565, "chi2": 81.568, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 58.357, "C1C1_dist": 7.593, "N1N9_dist": 6.077, "C6C8_dist": 5.300, "CNNC_torsion": 15.448, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N7[2.42],O4(carbonyl)*O6(carbonyl)[2.65]", "unusual_base2base_hbonds": 1, "interBase_angle": 46.210, "planarity": 0.546, "simple_Shear": -2.813, "simple_Stretch": 1.487, "simple_Buckle": -34.428, "simple_Propeller": 30.822, "bp_simpleParams": [ -2.813, 1.487, 0.897, -34.428, 30.822, -57.515 ], "bp_params": [ -0.580, 3.129, 0.897, 2.652, 46.133, -61.618 ], "frame": { "rmsd": null, "origin": [ 196.466, 188.386, 92.998 ], "x_axis": [ 0.268, -0.783, 0.562 ], "y_axis": [ -0.958, -0.153, 0.244 ], "z_axis": [ -0.105, -0.603, -0.791 ], "quaternion": [ 0.285, 0.744, -0.585, 0.154 ] } }, { "index": 984, "nt1": "///A/2322", "nt2": "///A/2369", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -120.919, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 53.312, "chi2": -151.828, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 60.986, "C1C1_dist": 10.001, "N1N9_dist": 8.431, "C6C8_dist": 9.446, "CNNC_torsion": 29.805, "hbonds_num": 1, "hbonds_desc": "N4(amino)-N1[2.75]", "interBase_angle": 53.666, "planarity": 0.670, "simple_Shear": -0.467, "simple_Stretch": -0.525, "simple_Buckle": -1.005, "simple_Propeller": 53.656, "bp_simpleParams": [ -0.467, -0.525, 1.143, -1.005, 53.656, 18.749 ], "bp_params": [ -0.433, -0.554, 1.143, -4.310, 53.492, 20.937 ], "frame": { "rmsd": null, "origin": [ 195.443, 186.151, 90.899 ], "x_axis": [ 0.542, -0.517, 0.662 ], "y_axis": [ -0.837, -0.403, 0.370 ], "z_axis": [ 0.075, -0.755, -0.651 ], "quaternion": [ 0.349, 0.806, -0.420, 0.229 ] } }, { "index": 985, "nt1": "///A/2323", "nt2": "///A/2368", "bp": "C+G", "name": "--", "Saenger": "--", "LW": ".WW", "DSSR": ".W+W", "intra_chain": true, "chi1": -95.132, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 93.657, "chi2": -28.449, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 29.526, "C1C1_dist": 9.869, "N1N9_dist": 8.781, "C6C8_dist": 9.982, "CNNC_torsion": -77.972, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.29]", "interBase_angle": 74.314, "planarity": 0.869, "simple_Shear": 1.390, "simple_Stretch": 2.482, "simple_Buckle": 15.396, "simple_Propeller": 72.701, "bp_simpleParams": [ 1.390, 2.482, -1.748, 15.396, 72.701, -110.007 ], "bp_params": [ 2.036, -1.987, -1.748, 67.108, -31.922, -101.918 ], "frame": { "rmsd": null, "origin": [ 195.875, 183.676, 90.527 ], "x_axis": [ -0.840, -0.533, 0.100 ], "y_axis": [ -0.391, 0.467, -0.793 ], "z_axis": [ 0.376, -0.705, -0.601 ], "quaternion": [ 0.081, -0.271, 0.853, -0.439 ] } }, { "index": 986, "nt1": "///A/2324", "nt2": "///A/2366", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.456, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.485, "chi2": -175.517, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 48.310, "C1C1_dist": 10.725, "N1N9_dist": 8.843, "C6C8_dist": 9.481, "CNNC_torsion": 23.655, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.96],N3-N1(imino)[2.85],N4(amino)-O6(carbonyl)[2.59]", "interBase_angle": 20.601, "planarity": 0.318, "simple_Shear": -0.135, "simple_Stretch": -0.434, "simple_Buckle": 17.240, "simple_Propeller": 11.278, "bp_simpleParams": [ -0.135, -0.434, -1.237, 17.240, 11.278, -13.632 ], "bp_params": [ -0.130, -0.436, -1.237, 17.140, 11.430, -13.550 ], "frame": { "rmsd": null, "origin": [ 196.937, 177.058, 90.611 ], "x_axis": [ -0.715, -0.417, 0.561 ], "y_axis": [ -0.623, 0.016, -0.782 ], "z_axis": [ 0.317, -0.909, -0.271 ], "quaternion": [ -0.086, -0.367, 0.708, -0.597 ] } }, { "index": 987, "nt1": "///A/2324", "nt2": "///A/2367", "bp": "C-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.456, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 65.407, "chi2": -112.762, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 65.673, "C1C1_dist": 9.525, "N1N9_dist": 8.310, "C6C8_dist": 9.550, "CNNC_torsion": -2.261, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.42],N3-N1(imino)[2.81],N4(amino)-O6(carbonyl)[3.06]", "interBase_angle": 9.164, "planarity": 0.336, "simple_Shear": 0.365, "simple_Stretch": -0.480, "simple_Buckle": -4.868, "simple_Propeller": 7.764, "bp_simpleParams": [ 0.365, -0.480, 1.434, -4.868, 7.764, 14.645 ], "bp_params": [ 0.349, -0.491, 1.434, -4.610, 7.919, 14.668 ], "frame": { "rmsd": null, "origin": [ 196.555, 178.298, 90.708 ], "x_axis": [ -0.560, -0.349, 0.752 ], "y_axis": [ -0.724, -0.235, -0.648 ], "z_axis": [ 0.403, -0.907, -0.121 ], "quaternion": [ 0.145, 0.446, -0.601, 0.647 ] } }, { "index": 988, "nt1": "///A/2326", "nt2": "///A/2350", "bp": "C-G", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -169.697, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 65.472, "chi2": 82.598, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 37.273, "C1C1_dist": 10.665, "N1N9_dist": 8.888, "C6C8_dist": 9.693, "CNNC_torsion": 11.679, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.17],N3*O6(carbonyl)[2.83]", "unusual_base2base_hbonds": 1, "interBase_angle": 34.615, "planarity": 0.522, "simple_Shear": 2.077, "simple_Stretch": 0.133, "simple_Buckle": 19.298, "simple_Propeller": 28.737, "bp_simpleParams": [ 2.077, 0.133, 0.165, 19.298, 28.737, -1.255 ], "bp_params": [ 2.052, -0.348, 0.165, 25.252, 23.676, -1.252 ], "frame": { "rmsd": null, "origin": [ 199.759, 163.106, 97.214 ], "x_axis": [ -0.549, -0.780, -0.300 ], "y_axis": [ -0.419, 0.568, -0.709 ], "z_axis": [ 0.723, -0.263, -0.638 ], "quaternion": [ 0.308, -0.361, 0.830, -0.293 ] } }, { "index": 989, "nt1": "///A/2327", "nt2": "///A/2346", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -174.384, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 15.205, "chi2": -156.684, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.396, "C1C1_dist": 8.418, "N1N9_dist": 6.371, "C6C8_dist": 5.887, "CNNC_torsion": -160.371, "hbonds_num": 3, "hbonds_desc": "N7*O2(carbonyl)[2.75],N6(amino)-O2'(hydroxyl)[2.77],N6(amino)-O2(carbonyl)[2.83]", "unusual_base2base_hbonds": 1, "interBase_angle": 52.738, "planarity": 0.505, "simple_Shear": -6.634, "simple_Stretch": 0.853, "simple_Buckle": -50.254, "simple_Propeller": -15.994, "bp_simpleParams": [ -6.634, 0.853, -2.384, -50.254, -15.994, -59.932 ], "bp_params": [ -4.839, -4.618, -2.384, -20.055, -48.776, -63.947 ], "frame": { "rmsd": null, "origin": [ 202.646, 158.571, 93.351 ], "x_axis": [ -0.262, -0.066, -0.963 ], "y_axis": [ 0.231, 0.964, -0.129 ], "z_axis": [ 0.937, -0.256, -0.237 ], "quaternion": [ 0.605, 0.053, 0.785, -0.123 ] } }, { "index": 990, "nt1": "///A/2327", "nt2": "///A/2350", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -174.384, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 103.296, "chi2": 82.598, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 28.279, "C1C1_dist": 7.163, "N1N9_dist": 6.347, "C6C8_dist": 7.044, "CNNC_torsion": -86.632, "hbonds_num": 1, "hbonds_desc": "N3*O6(carbonyl)[2.78]", "interBase_angle": 54.053, "planarity": 0.752, "simple_Shear": 7.150, "simple_Stretch": 1.164, "simple_Buckle": 53.421, "simple_Propeller": 8.243, "bp_simpleParams": [ 7.150, 1.164, 1.769, 53.421, 8.243, 13.955 ], "bp_params": [ 5.649, -4.535, 1.769, 41.495, -34.641, 13.759 ], "frame": { "rmsd": null, "origin": [ 200.909, 160.418, 96.856 ], "x_axis": [ -0.215, -0.716, -0.664 ], "y_axis": [ -0.214, 0.698, -0.683 ], "z_axis": [ 0.953, -0.005, -0.303 ], "quaternion": [ 0.543, -0.312, 0.744, -0.231 ] } }, { "index": 991, "nt1": "///A/2329", "nt2": "///A/2344", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 177.730, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.585, "chi2": -162.059, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.047, "C1C1_dist": 11.001, "N1N9_dist": 9.024, "C6C8_dist": 9.777, "CNNC_torsion": -7.078, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.80],N1-N3(imino)[2.92]", "interBase_angle": 5.183, "planarity": 0.143, "simple_Shear": 0.012, "simple_Stretch": -0.146, "simple_Buckle": -4.666, "simple_Propeller": -2.255, "bp_simpleParams": [ 0.012, -0.146, 0.458, -4.666, -2.255, -8.181 ], "bp_params": [ 0.011, -0.146, 0.458, -4.681, -2.224, -8.176 ], "frame": { "rmsd": null, "origin": [ 208.075, 157.347, 89.832 ], "x_axis": [ 0.110, 0.990, -0.093 ], "y_axis": [ 0.019, 0.091, 0.996 ], "z_axis": [ 0.994, -0.111, -0.009 ], "quaternion": [ 0.546, 0.507, 0.498, 0.444 ] } }, { "index": 992, "nt1": "///A/2330", "nt2": "///A/2343", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": 158.358, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 12.856, "chi2": -176.532, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 47.791, "C1C1_dist": 11.446, "N1N9_dist": 9.124, "C6C8_dist": 8.485, "CNNC_torsion": 170.347, "hbonds_num": 1, "hbonds_desc": "N7*N1[3.12]", "interBase_angle": 23.972, "planarity": 0.283, "simple_Shear": -5.208, "simple_Stretch": 2.509, "simple_Buckle": 13.781, "simple_Propeller": 19.614, "bp_simpleParams": [ -5.208, 2.509, -0.219, 13.781, 19.614, -72.022 ], "bp_params": [ -5.557, -1.591, -0.219, -2.817, 23.806, -73.195 ], "frame": { "rmsd": null, "origin": [ 211.025, 154.093, 86.602 ], "x_axis": [ -0.099, 0.984, 0.151 ], "y_axis": [ -0.006, -0.152, 0.988 ], "z_axis": [ 0.995, 0.097, 0.021 ], "quaternion": [ 0.439, 0.508, 0.481, 0.564 ] } }, { "index": 993, "nt1": "///A/2331", "nt2": "///A/2332", "bp": "U+G", "name": "Platform", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -152.811, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 102.970, "chi2": -110.471, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 46.309, "C1C1_dist": 6.559, "N1N9_dist": 5.886, "C6C8_dist": 6.047, "CNNC_torsion": -11.179, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O5'[2.61],N3(imino)-O6(carbonyl)[2.87]", "interBase_angle": 49.067, "planarity": 0.902, "simple_Shear": -0.130, "simple_Stretch": 3.271, "simple_Buckle": -2.269, "simple_Propeller": -49.014, "bp_simpleParams": [ -0.130, 3.271, 0.132, -2.269, -49.014, -17.311 ], "bp_params": [ 3.190, 0.734, 0.132, -48.567, -6.984, -15.834 ], "frame": { "rmsd": null, "origin": [ 212.727, 157.656, 85.650 ], "x_axis": [ -0.224, 0.239, 0.945 ], "y_axis": [ 0.645, -0.691, 0.328 ], "z_axis": [ 0.731, 0.682, 0.000 ], "quaternion": [ -0.147, 0.606, 0.365, 0.692 ] } }, { "index": 994, "nt1": "///A/2331", "nt2": "///A/2343", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.811, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 65.378, "chi2": -176.532, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 63.163, "C1C1_dist": 8.992, "N1N9_dist": 7.717, "C6C8_dist": 8.907, "CNNC_torsion": 2.605, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N6(amino)[2.92]", "interBase_angle": 25.726, "planarity": 0.626, "simple_Shear": 0.063, "simple_Stretch": -1.071, "simple_Buckle": 16.363, "simple_Propeller": 19.851, "bp_simpleParams": [ 0.063, -1.071, 1.901, 16.363, 19.851, 19.228 ], "bp_params": [ 0.050, -1.072, 1.901, 16.565, 19.683, 19.315 ], "frame": { "rmsd": null, "origin": [ 211.755, 157.272, 87.543 ], "x_axis": [ -0.083, 0.569, 0.818 ], "y_axis": [ 0.079, -0.815, 0.575 ], "z_axis": [ 0.993, 0.112, 0.023 ], "quaternion": [ 0.177, 0.654, 0.248, 0.693 ] } }, { "index": 995, "nt1": "///A/2347", "nt2": "///A/2350", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": 50.759, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 22.067, "chi2": 82.598, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 47.802, "C1C1_dist": 9.336, "N1N9_dist": 7.132, "C6C8_dist": 5.768, "CNNC_torsion": -138.125, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)*OP1[3.18],N2(amino)-O6(carbonyl)[3.07]", "interBase_angle": 11.243, "planarity": 0.641, "simple_Shear": 2.646, "simple_Stretch": 3.198, "simple_Buckle": 3.172, "simple_Propeller": 10.786, "bp_simpleParams": [ 2.646, 3.198, -2.338, 3.172, 10.786, -140.773 ], "bp_params": [ 4.142, -0.266, -2.338, 10.593, 3.769, -140.637 ], "frame": { "rmsd": null, "origin": [ 200.136, 162.303, 99.094 ], "x_axis": [ 0.379, -0.837, 0.394 ], "y_axis": [ -0.507, -0.544, -0.669 ], "z_axis": [ 0.774, 0.054, -0.630 ], "quaternion": [ -0.226, 0.799, -0.420, 0.366 ] } }, { "index": 996, "nt1": "///A/2355", "nt2": "///A/2414", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -115.512, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 78.712, "chi2": -146.161, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 23.019, "C1C1_dist": 8.027, "N1N9_dist": 6.653, "C6C8_dist": 7.252, "CNNC_torsion": -145.842, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N4(amino)[2.91]", "interBase_angle": 63.215, "planarity": 0.737, "simple_Shear": 7.813, "simple_Stretch": 1.044, "simple_Buckle": 49.837, "simple_Propeller": -38.890, "bp_simpleParams": [ 7.813, 1.044, 1.368, 49.837, -38.890, -32.768 ], "bp_params": [ 5.337, -5.800, 1.368, -2.363, -63.170, -38.077 ], "frame": { "rmsd": null, "origin": [ 194.982, 172.875, 117.327 ], "x_axis": [ 0.837, -0.116, -0.535 ], "y_axis": [ 0.539, 0.001, 0.842 ], "z_axis": [ -0.097, -0.993, 0.064 ], "quaternion": [ 0.690, 0.666, 0.159, -0.237 ] } }, { "index": 997, "nt1": "///A/2357", "nt2": "///A/2359", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cHH", "DSSR": "cM-M", "intra_chain": true, "chi1": 26.647, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 62.587, "chi2": -172.021, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 28.420, "C1C1_dist": 8.816, "N1N9_dist": 6.862, "C6C8_dist": 5.295, "CNNC_torsion": 8.896, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O6(carbonyl)[2.48]", "interBase_angle": 71.340, "planarity": 0.825, "simple_Shear": 0.844, "simple_Stretch": 4.634, "simple_Buckle": -69.279, "simple_Propeller": -17.024, "bp_simpleParams": [ 0.844, 4.634, 0.158, -69.279, -17.024, 163.586 ], "bp_params": [ 1.553, -4.447, 0.158, 53.211, 47.519, 162.869 ], "frame": { "rmsd": null, "origin": [ 193.846, 169.538, 113.890 ], "x_axis": [ 0.806, 0.549, -0.220 ], "y_axis": [ -0.581, 0.668, -0.465 ], "z_axis": [ -0.108, 0.503, 0.857 ], "quaternion": [ 0.913, -0.265, 0.031, 0.310 ] } }, { "index": 998, "nt1": "///A/2358", "nt2": "///A/2361", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 147.686, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 58.506, "chi2": 42.738, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 42.810, "C1C1_dist": 12.434, "N1N9_dist": 10.594, "C6C8_dist": 11.315, "CNNC_torsion": 15.533, "hbonds_num": 1, "hbonds_desc": "N1-N4(amino)[3.92]", "interBase_angle": 50.654, "planarity": 0.557, "simple_Shear": 1.294, "simple_Stretch": 1.490, "simple_Buckle": 18.483, "simple_Propeller": 47.161, "bp_simpleParams": [ 1.294, 1.490, 1.994, 18.483, 47.161, 4.035 ], "bp_params": [ 1.543, 1.230, 1.994, 25.999, 43.472, 4.249 ], "frame": { "rmsd": null, "origin": [ 193.364, 168.258, 104.824 ], "x_axis": [ 0.855, 0.486, 0.178 ], "y_axis": [ -0.309, 0.202, 0.929 ], "z_axis": [ 0.416, -0.850, 0.323 ], "quaternion": [ 0.772, 0.577, 0.077, 0.258 ] } }, { "index": 999, "nt1": "///A/2361", "nt2": "///A/2365", "bp": "C-A", "name": "--", "Saenger": "--", "LW": ".HW", "DSSR": ".M-W", "intra_chain": true, "chi1": 42.738, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 34.179, "chi2": -49.294, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 21.789, "C1C1_dist": 11.798, "N1N9_dist": 9.263, "C6C8_dist": 7.951, "CNNC_torsion": 96.914, "hbonds_num": 1, "hbonds_desc": "N4(amino)-N1[2.93]", "interBase_angle": 47.019, "planarity": 0.644, "simple_Shear": -2.353, "simple_Stretch": 3.161, "simple_Buckle": 47.019, "simple_Propeller": -0.215, "bp_simpleParams": [ -2.353, 3.161, -0.535, 47.019, -0.215, -115.807 ], "bp_params": [ -3.434, 1.933, -0.535, 43.051, 18.906, -112.702 ], "frame": { "rmsd": null, "origin": [ 194.226, 169.215, 103.063 ], "x_axis": [ 0.764, -0.129, -0.632 ], "y_axis": [ -0.546, -0.652, -0.526 ], "z_axis": [ -0.345, 0.747, -0.569 ], "quaternion": [ -0.368, 0.864, -0.195, -0.283 ] } }, { "index": 1000, "nt1": "///A/2375", "nt2": "///A/2412", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": ".HS", "DSSR": ".M-m", "intra_chain": true, "chi1": 37.161, "conf1": "syn", "pucker1": "~C2'-endo", "lambda1": 28.527, "chi2": -3.677, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 103.995, "C1C1_dist": 9.393, "N1N9_dist": 8.514, "C6C8_dist": 8.966, "CNNC_torsion": 47.770, "hbonds_num": 2, "hbonds_desc": "N7-N2(amino)[3.41],N6(amino)-OP2[2.90]", "interBase_angle": 52.922, "planarity": 0.894, "simple_Shear": -6.791, "simple_Stretch": 2.843, "simple_Buckle": 18.288, "simple_Propeller": -49.662, "bp_simpleParams": [ -6.791, 2.843, -2.438, 18.288, -49.662, 14.574 ], "bp_params": [ -6.432, -3.583, -2.438, 50.033, -17.246, 13.401 ], "frame": { "rmsd": null, "origin": [ 196.939, 188.897, 108.398 ], "x_axis": [ 0.952, -0.234, 0.198 ], "y_axis": [ 0.061, 0.777, 0.627 ], "z_axis": [ -0.300, -0.585, 0.754 ], "quaternion": [ 0.933, 0.325, -0.133, -0.079 ] } }, { "index": 1001, "nt1": "///A/2376", "nt2": "///A/2399", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -103.141, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 52.023, "chi2": -108.815, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 52.306, "C1C1_dist": 10.634, "N1N9_dist": 8.842, "C6C8_dist": 9.733, "CNNC_torsion": 12.513, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.83],N4(amino)-O6(carbonyl)[2.83]", "interBase_angle": 4.858, "planarity": 0.138, "simple_Shear": 0.178, "simple_Stretch": -0.283, "simple_Buckle": -1.381, "simple_Propeller": 4.658, "bp_simpleParams": [ 0.178, -0.283, -0.512, -1.381, 4.658, -1.983 ], "bp_params": [ 0.174, -0.286, -0.512, -1.318, 4.676, -1.984 ], "frame": { "rmsd": null, "origin": [ 180.249, 199.023, 105.193 ], "x_axis": [ -0.434, -0.891, -0.129 ], "y_axis": [ 0.660, -0.413, 0.628 ], "z_axis": [ -0.613, 0.187, 0.768 ], "quaternion": [ -0.480, -0.230, 0.252, 0.808 ] } }, { "index": 1002, "nt1": "///A/2377", "nt2": "///A/2398", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.053, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.271, "chi2": -131.870, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 50.098, "C1C1_dist": 10.685, "N1N9_dist": 8.868, "C6C8_dist": 9.755, "CNNC_torsion": 5.249, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.83],O4(carbonyl)-N6(amino)[2.88]", "interBase_angle": 1.694, "planarity": 0.097, "simple_Shear": -0.024, "simple_Stretch": -0.186, "simple_Buckle": 1.666, "simple_Propeller": -0.309, "bp_simpleParams": [ -0.024, -0.186, -0.496, 1.666, -0.309, -1.989 ], "bp_params": [ -0.022, -0.186, -0.496, 1.668, -0.296, -1.989 ], "frame": { "rmsd": null, "origin": [ 177.458, 199.322, 106.696 ], "x_axis": [ -0.005, -0.992, 0.123 ], "y_axis": [ 0.768, 0.075, 0.636 ], "z_axis": [ -0.641, 0.098, 0.762 ], "quaternion": [ 0.677, 0.199, -0.282, -0.650 ] } }, { "index": 1003, "nt1": "///A/2379", "nt2": "///A/2396", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.578, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.622, "chi2": 179.069, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.501, "C1C1_dist": 10.308, "N1N9_dist": 8.643, "C6C8_dist": 9.629, "CNNC_torsion": 8.891, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.63],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 4.538, "planarity": 0.305, "simple_Shear": 0.301, "simple_Stretch": -0.457, "simple_Buckle": 1.906, "simple_Propeller": -4.118, "bp_simpleParams": [ 0.301, -0.457, -1.337, 1.906, -4.118, 4.865 ], "bp_params": [ 0.290, -0.465, -1.337, 1.803, -4.165, 4.868 ], "frame": { "rmsd": null, "origin": [ 174.251, 192.501, 110.454 ], "x_axis": [ 0.944, -0.319, 0.088 ], "y_axis": [ 0.232, 0.827, 0.512 ], "z_axis": [ -0.236, -0.462, 0.855 ], "quaternion": [ 0.952, 0.256, -0.085, -0.145 ] } }, { "index": 1004, "nt1": "///A/2379", "nt2": "///A/2397", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.578, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 71.774, "chi2": -109.953, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 78.697, "C1C1_dist": 7.458, "N1N9_dist": 6.715, "C6C8_dist": 8.438, "CNNC_torsion": 13.894, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)*O2(carbonyl)[2.72]", "interBase_angle": 51.090, "planarity": 0.481, "simple_Shear": -0.363, "simple_Stretch": -0.060, "simple_Buckle": -48.476, "simple_Propeller": 16.134, "bp_simpleParams": [ -0.363, -0.060, -0.473, -48.476, 16.134, 47.566 ], "bp_params": [ -0.358, -0.085, -0.473, -49.671, 11.957, 43.844 ], "frame": { "rmsd": null, "origin": [ 174.513, 192.323, 109.943 ], "x_axis": [ 0.761, -0.648, 0.011 ], "y_axis": [ 0.345, 0.419, 0.840 ], "z_axis": [ -0.549, -0.636, 0.543 ], "quaternion": [ 0.825, 0.447, -0.169, -0.301 ] } }, { "index": 1005, "nt1": "///A/2383", "nt2": "///A/2392", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.529, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.108, "chi2": -140.963, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.378, "C1C1_dist": 10.440, "N1N9_dist": 8.693, "C6C8_dist": 9.326, "CNNC_torsion": 14.982, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.99],N1-N3(imino)[3.06]", "interBase_angle": 41.010, "planarity": 0.502, "simple_Shear": 0.554, "simple_Stretch": -0.273, "simple_Buckle": -40.462, "simple_Propeller": -6.686, "bp_simpleParams": [ 0.554, -0.273, -2.468, -40.462, -6.686, -8.932 ], "bp_params": [ 0.534, -0.311, -2.468, -40.854, -3.582, -8.377 ], "frame": { "rmsd": null, "origin": [ 175.426, 182.388, 124.639 ], "x_axis": [ -0.662, 0.737, 0.136 ], "y_axis": [ -0.749, -0.648, -0.136 ], "z_axis": [ -0.012, -0.192, 0.981 ], "quaternion": [ 0.410, 0.034, -0.090, 0.907 ] } }, { "index": 1006, "nt1": "///A/2383", "nt2": "///A/2393", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.529, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 72.412, "chi2": -132.869, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 64.420, "C1C1_dist": 8.695, "N1N9_dist": 7.610, "C6C8_dist": 8.808, "CNNC_torsion": -9.285, "hbonds_num": 1, "hbonds_desc": "N1*N3[2.88]", "interBase_angle": 58.970, "planarity": 0.717, "simple_Shear": 0.431, "simple_Stretch": 0.295, "simple_Buckle": -58.247, "simple_Propeller": -9.206, "bp_simpleParams": [ 0.431, 0.295, 0.369, -58.247, -9.206, 25.307 ], "bp_params": [ 0.451, 0.264, 0.369, -58.816, -4.255, 22.151 ], "frame": { "rmsd": null, "origin": [ 175.565, 182.827, 123.241 ], "x_axis": [ -0.457, 0.854, 0.248 ], "y_axis": [ -0.871, -0.486, 0.072 ], "z_axis": [ 0.183, -0.183, 0.966 ], "quaternion": [ 0.506, 0.126, -0.032, 0.853 ] } }, { "index": 1007, "nt1": "///A/2384", "nt2": "///A/2391", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 161.203, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.266, "chi2": -157.578, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.242, "C1C1_dist": 10.518, "N1N9_dist": 8.672, "C6C8_dist": 9.478, "CNNC_torsion": 8.552, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.84],N3-N1(imino)[2.95],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 32.111, "planarity": 0.512, "simple_Shear": 0.190, "simple_Stretch": -0.193, "simple_Buckle": -30.542, "simple_Propeller": 9.913, "bp_simpleParams": [ 0.190, -0.193, -0.656, -30.542, 9.913, -3.998 ], "bp_params": [ 0.189, -0.194, -0.656, -30.560, 9.858, -3.872 ], "frame": { "rmsd": null, "origin": [ 174.916, 183.158, 128.404 ], "x_axis": [ -0.825, 0.565, -0.012 ], "y_axis": [ -0.516, -0.762, -0.392 ], "z_axis": [ -0.231, -0.317, 0.920 ], "quaternion": [ 0.288, -0.065, -0.189, 0.936 ] } }, { "index": 1008, "nt1": "///A/2384", "nt2": "///A/2392", "bp": "C-U", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 161.203, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 69.439, "chi2": -140.963, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.686, "C1C1_dist": 8.560, "N1N9_dist": 7.131, "C6C8_dist": 8.139, "CNNC_torsion": -18.078, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O4(carbonyl)[3.46]", "interBase_angle": 51.175, "planarity": 0.577, "simple_Shear": 1.709, "simple_Stretch": -1.094, "simple_Buckle": -51.168, "simple_Propeller": 0.848, "bp_simpleParams": [ 1.709, -1.094, 2.002, -51.168, 0.848, 9.437 ], "bp_params": [ 1.500, -1.366, 2.002, -50.303, 9.405, 8.581 ], "frame": { "rmsd": null, "origin": [ 175.218, 182.621, 126.966 ], "x_axis": [ -0.768, 0.638, 0.055 ], "y_axis": [ -0.631, -0.739, -0.235 ], "z_axis": [ -0.109, -0.215, 0.970 ], "quaternion": [ 0.340, -0.015, -0.121, 0.932 ] } }, { "index": 1009, "nt1": "///A/2385", "nt2": "///A/2390", "bp": "C-A", "name": "--", "Saenger": "--", "LW": ".WW", "DSSR": ".W-W", "intra_chain": true, "chi1": -155.532, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 75.851, "chi2": -179.680, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 25.474, "C1C1_dist": 11.101, "N1N9_dist": 9.458, "C6C8_dist": 10.004, "CNNC_torsion": 43.615, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[3.21]", "interBase_angle": 53.384, "planarity": 0.580, "simple_Shear": 5.068, "simple_Stretch": 1.508, "simple_Buckle": -40.883, "simple_Propeller": 34.328, "bp_simpleParams": [ 5.068, 1.508, 1.295, -40.883, 34.328, 1.275 ], "bp_params": [ 5.169, -1.111, 1.295, -19.717, 49.609, 1.388 ], "frame": { "rmsd": null, "origin": [ 173.764, 182.989, 131.242 ], "x_axis": [ -0.823, -0.187, -0.537 ], "y_axis": [ 0.352, -0.909, -0.224 ], "z_axis": [ -0.446, -0.373, 0.813 ], "quaternion": [ -0.143, -0.261, -0.159, 0.941 ] } }, { "index": 1010, "nt1": "///A/2414", "nt2": "///A/2416", "bp": "C+U", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -146.161, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 40.860, "chi2": -139.093, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 69.338, "C1C1_dist": 8.949, "N1N9_dist": 7.322, "C6C8_dist": 6.318, "CNNC_torsion": 6.475, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O4(carbonyl)[3.36]", "interBase_angle": 57.369, "planarity": 0.853, "simple_Shear": -3.339, "simple_Stretch": 3.011, "simple_Buckle": -25.626, "simple_Propeller": -51.327, "bp_simpleParams": [ -3.339, 3.011, -2.252, -25.626, -51.327, -41.723 ], "bp_params": [ -2.692, 3.601, -2.252, -34.083, -46.147, -43.434 ], "frame": { "rmsd": null, "origin": [ 196.688, 174.490, 121.928 ], "x_axis": [ 0.781, 0.038, -0.623 ], "y_axis": [ -0.607, 0.282, -0.743 ], "z_axis": [ 0.148, 0.959, 0.244 ], "quaternion": [ 0.759, -0.560, 0.254, 0.212 ] } }, { "index": 1011, "nt1": "///A/2425", "nt2": "///A/2450", "bp": "G+G", "name": "--", "Saenger": "06-VI", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -56.367, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 54.789, "chi2": 135.803, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 50.444, "C1C1_dist": 9.720, "N1N9_dist": 7.946, "C6C8_dist": 7.300, "CNNC_torsion": -15.245, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)*O6(carbonyl)[2.74],N1(imino)-N7[2.27]", "unusual_base2base_hbonds": 1, "interBase_angle": 45.120, "planarity": 0.607, "simple_Shear": -3.981, "simple_Stretch": 2.082, "simple_Buckle": -28.369, "simple_Propeller": -35.086, "bp_simpleParams": [ -3.981, 2.082, 1.504, -28.369, -35.086, -86.167 ], "bp_params": [ -0.792, 4.422, 1.504, -45.115, 0.682, -81.635 ], "frame": { "rmsd": null, "origin": [ 191.957, 204.572, 129.400 ], "x_axis": [ -0.627, 0.426, -0.652 ], "y_axis": [ -0.131, 0.768, 0.627 ], "z_axis": [ 0.768, 0.479, -0.426 ], "quaternion": [ 0.423, 0.088, 0.840, 0.329 ] } }, { "index": 1012, "nt1": "///A/2426", "nt2": "///A/2427", "bp": "G+U", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": 136.780, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 117.732, "chi2": -110.758, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 54.192, "C1C1_dist": 7.217, "N1N9_dist": 7.055, "C6C8_dist": 7.150, "CNNC_torsion": 20.417, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O4(carbonyl)[2.24]", "interBase_angle": 13.435, "planarity": 0.400, "simple_Shear": -0.238, "simple_Stretch": 6.308, "simple_Buckle": -13.327, "simple_Propeller": 1.700, "bp_simpleParams": [ -0.238, 6.308, -1.839, -13.327, 1.700, -6.291 ], "bp_params": [ 6.062, 1.759, -1.839, -1.586, 13.341, -6.333 ], "frame": { "rmsd": null, "origin": [ 192.511, 209.644, 131.634 ], "x_axis": [ -0.291, -0.517, 0.805 ], "y_axis": [ -0.245, 0.854, 0.459 ], "z_axis": [ -0.925, -0.064, -0.375 ], "quaternion": [ 0.545, 0.240, -0.794, -0.125 ] } }, { "index": 1013, "nt1": "///A/2426", "nt2": "///A/2449", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": 136.780, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 57.088, "chi2": 75.011, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 32.408, "C1C1_dist": 12.276, "N1N9_dist": 10.376, "C6C8_dist": 9.923, "CNNC_torsion": 124.270, "hbonds_num": 1, "hbonds_desc": "N2(amino)*N4(amino)[2.96]", "interBase_angle": 58.495, "planarity": 0.641, "simple_Shear": 5.546, "simple_Stretch": 5.318, "simple_Buckle": 0.099, "simple_Propeller": -58.495, "bp_simpleParams": [ 5.546, 5.318, 0.468, 0.099, -58.495, -82.075 ], "bp_params": [ 7.524, -1.562, 0.468, -48.170, -33.186, -79.406 ], "frame": { "rmsd": null, "origin": [ 192.146, 208.966, 130.977 ], "x_axis": [ -0.012, 0.188, 0.982 ], "y_axis": [ -0.473, 0.864, -0.171 ], "z_axis": [ -0.881, -0.467, 0.079 ], "quaternion": [ 0.695, 0.106, -0.670, 0.238 ] } }, { "index": 1014, "nt1": "///A/2427", "nt2": "///A/2448", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -110.758, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 58.951, "chi2": -156.604, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 84.217, "C1C1_dist": 7.504, "N1N9_dist": 6.636, "C6C8_dist": 8.375, "CNNC_torsion": 32.779, "hbonds_num": 1, "hbonds_desc": "N3(imino)-O2(carbonyl)[2.66]", "interBase_angle": 43.652, "planarity": 0.554, "simple_Shear": -2.308, "simple_Stretch": -0.719, "simple_Buckle": 31.507, "simple_Propeller": 30.213, "bp_simpleParams": [ -2.308, -0.719, -1.513, 31.507, 30.213, 35.445 ], "bp_params": [ -2.101, -1.196, -1.513, 24.361, 36.222, 36.452 ], "frame": { "rmsd": null, "origin": [ 191.442, 210.353, 128.992 ], "x_axis": [ -0.584, -0.671, 0.457 ], "y_axis": [ -0.171, 0.652, 0.739 ], "z_axis": [ -0.794, 0.353, -0.496 ], "quaternion": [ -0.378, -0.255, 0.826, 0.330 ] } }, { "index": 1015, "nt1": "///A/2427", "nt2": "///A/2449", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW-M", "intra_chain": true, "chi1": -110.758, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 42.994, "chi2": 75.011, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 26.332, "C1C1_dist": 11.061, "N1N9_dist": 8.677, "C6C8_dist": 8.189, "CNNC_torsion": 24.378, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N4(amino)[2.39]", "interBase_angle": 70.746, "planarity": 0.754, "simple_Shear": 1.241, "simple_Stretch": 0.929, "simple_Buckle": -45.158, "simple_Propeller": -54.459, "bp_simpleParams": [ 1.241, 0.929, -1.303, -45.158, -54.459, -72.751 ], "bp_params": [ 1.443, 0.567, -1.303, -57.395, -41.363, -69.592 ], "frame": { "rmsd": null, "origin": [ 192.392, 209.723, 127.788 ], "x_axis": [ -0.139, 0.199, 0.970 ], "y_axis": [ -0.419, 0.876, -0.239 ], "z_axis": [ -0.897, -0.440, -0.038 ], "quaternion": [ 0.652, 0.077, -0.716, 0.237 ] } }, { "index": 1016, "nt1": "///A/2429", "nt2": "///A/2447", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -76.847, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 75.575, "chi2": -80.764, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 92.108, "C1C1_dist": 9.765, "N1N9_dist": 9.499, "C6C8_dist": 11.420, "CNNC_torsion": 38.546, "hbonds_num": 1, "hbonds_desc": "N2(amino)-N3[3.08]", "interBase_angle": 44.728, "planarity": 0.555, "simple_Shear": -1.440, "simple_Stretch": 3.415, "simple_Buckle": 26.582, "simple_Propeller": 35.973, "bp_simpleParams": [ -1.440, 3.415, 0.245, 26.582, 35.973, 68.417 ], "bp_params": [ -1.955, 3.149, 0.245, 20.334, 39.839, 70.918 ], "frame": { "rmsd": null, "origin": [ 185.233, 214.029, 125.868 ], "x_axis": [ -0.351, -0.261, 0.899 ], "y_axis": [ -0.356, 0.925, 0.129 ], "z_axis": [ -0.866, -0.275, -0.418 ], "quaternion": [ 0.538, 0.188, -0.821, 0.045 ] } }, { "index": 1017, "nt1": "///A/2430", "nt2": "///A/2446", "bp": "U-C", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -91.829, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 57.199, "chi2": -65.799, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 52.329, "C1C1_dist": 8.513, "N1N9_dist": 6.827, "C6C8_dist": 7.904, "CNNC_torsion": 16.743, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)*O2(carbonyl)[3.22],N3(imino)-N3[2.71],O4(carbonyl)-N4(amino)[2.30]", "unusual_base2base_hbonds": 1, "interBase_angle": 29.379, "planarity": 0.331, "simple_Shear": 0.644, "simple_Stretch": -1.951, "simple_Buckle": -26.324, "simple_Propeller": 13.046, "bp_simpleParams": [ 0.644, -1.951, -0.396, -26.324, 13.046, 0.600 ], "bp_params": [ 0.544, -1.981, -0.396, -25.703, 14.230, 0.590 ], "frame": { "rmsd": null, "origin": [ 180.594, 216.597, 124.900 ], "x_axis": [ 0.179, 0.161, 0.971 ], "y_axis": [ -0.437, 0.897, -0.068 ], "z_axis": [ -0.882, -0.412, 0.231 ], "quaternion": [ 0.759, 0.113, -0.610, 0.197 ] } }, { "index": 1018, "nt1": "///A/2432", "nt2": "///A/2443", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.586, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.652, "chi2": 173.834, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.377, "C1C1_dist": 10.768, "N1N9_dist": 8.912, "C6C8_dist": 9.736, "CNNC_torsion": 8.216, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.92],N3-N1(imino)[2.98],N4(amino)-O6(carbonyl)[2.79]", "interBase_angle": 10.780, "planarity": 0.322, "simple_Shear": 0.028, "simple_Stretch": -0.268, "simple_Buckle": -10.440, "simple_Propeller": -2.685, "bp_simpleParams": [ 0.028, -0.268, -0.907, -10.440, -2.685, -3.187 ], "bp_params": [ 0.028, -0.268, -0.907, -10.439, -2.692, -3.174 ], "frame": { "rmsd": null, "origin": [ 175.908, 221.874, 130.011 ], "x_axis": [ 0.690, 0.614, -0.383 ], "y_axis": [ -0.558, 0.115, -0.822 ], "z_axis": [ -0.460, 0.781, 0.422 ], "quaternion": [ 0.746, -0.537, -0.026, 0.393 ] } }, { "index": 1019, "nt1": "///A/2433", "nt2": "///A/2442", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.727, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.025, "chi2": -168.653, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.783, "C1C1_dist": 10.667, "N1N9_dist": 8.889, "C6C8_dist": 9.818, "CNNC_torsion": 11.203, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 14.982, "planarity": 0.184, "simple_Shear": 0.162, "simple_Stretch": -0.189, "simple_Buckle": -4.995, "simple_Propeller": 14.124, "bp_simpleParams": [ 0.162, -0.189, -0.185, -4.995, 14.124, -0.325 ], "bp_params": [ 0.160, -0.190, -0.185, -4.834, 14.180, -0.327 ], "frame": { "rmsd": null, "origin": [ 176.487, 224.803, 132.151 ], "x_axis": [ 0.430, 0.402, -0.808 ], "y_axis": [ -0.834, -0.166, -0.526 ], "z_axis": [ -0.346, 0.900, 0.264 ], "quaternion": [ 0.618, -0.577, 0.187, 0.500 ] } }, { "index": 1020, "nt1": "///A/2434", "nt2": "///A/2441", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -143.534, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 94.743, "chi2": -178.767, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 13.776, "C1C1_dist": 10.156, "N1N9_dist": 8.916, "C6C8_dist": 9.431, "CNNC_torsion": -3.539, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.90],N3-N6(amino)[2.77]", "interBase_angle": 17.359, "planarity": 0.264, "simple_Shear": 6.818, "simple_Stretch": 2.367, "simple_Buckle": -3.691, "simple_Propeller": 16.962, "bp_simpleParams": [ 6.818, 2.367, 0.522, -3.691, 16.962, -2.010 ], "bp_params": [ 6.531, -3.070, 0.522, 9.233, 14.700, -2.020 ], "frame": { "rmsd": null, "origin": [ 176.913, 227.745, 132.846 ], "x_axis": [ -0.393, -0.052, -0.918 ], "y_axis": [ -0.869, -0.305, 0.390 ], "z_axis": [ -0.300, 0.951, 0.075 ], "quaternion": [ 0.307, -0.457, 0.503, 0.666 ] } }, { "index": 1021, "nt1": "///A/2464", "nt2": "///A/2627", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -153.797, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 79.689, "chi2": -120.799, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 64.824, "C1C1_dist": 7.945, "N1N9_dist": 7.550, "C6C8_dist": 9.798, "CNNC_torsion": 151.723, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.02],N3*N3[3.31]", "interBase_angle": 38.619, "planarity": 0.428, "simple_Shear": 7.187, "simple_Stretch": 3.256, "simple_Buckle": 32.281, "simple_Propeller": -21.199, "bp_simpleParams": [ 7.187, 3.256, 0.882, 32.281, -21.199, -168.150 ], "bp_params": [ -3.094, -7.259, 0.882, -38.071, -6.486, -167.487 ], "frame": { "rmsd": null, "origin": [ 201.975, 190.479, 168.401 ], "x_axis": [ -0.184, -0.064, -0.981 ], "y_axis": [ 0.772, -0.627, -0.104 ], "z_axis": [ -0.609, -0.776, 0.164 ], "quaternion": [ -0.297, -0.565, -0.313, 0.703 ] } }, { "index": 1022, "nt1": "///A/2489", "nt2": "///A/2523", "bp": "U+G", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -170.086, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 99.226, "chi2": -169.200, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 29.197, "C1C1_dist": 9.379, "N1N9_dist": 8.486, "C6C8_dist": 9.690, "CNNC_torsion": -102.823, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.72]", "interBase_angle": 73.018, "planarity": 0.904, "simple_Shear": 3.028, "simple_Stretch": 3.330, "simple_Buckle": -32.224, "simple_Propeller": 65.523, "bp_simpleParams": [ 3.028, 3.330, -1.609, -32.224, 65.523, -96.358 ], "bp_params": [ 1.587, -4.212, -1.609, 72.913, -3.911, -83.939 ], "frame": { "rmsd": null, "origin": [ 215.875, 162.526, 149.419 ], "x_axis": [ 0.424, 0.005, 0.906 ], "y_axis": [ -0.858, 0.321, 0.400 ], "z_axis": [ -0.289, -0.947, 0.140 ], "quaternion": [ 0.686, 0.491, -0.435, 0.314 ] } }, { "index": 1023, "nt1": "///A/2490", "nt2": "///A/2519", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.555, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.109, "chi2": -129.197, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.472, "C1C1_dist": 9.909, "N1N9_dist": 8.357, "C6C8_dist": 9.378, "CNNC_torsion": 2.391, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 30.303, "planarity": 0.581, "simple_Shear": 0.226, "simple_Stretch": -0.336, "simple_Buckle": -29.730, "simple_Propeller": -5.865, "bp_simpleParams": [ 0.226, -0.336, -0.957, -29.730, -5.865, 6.724 ], "bp_params": [ 0.217, -0.341, -0.957, -29.887, -5.005, 6.504 ], "frame": { "rmsd": null, "origin": [ 220.907, 160.240, 147.873 ], "x_axis": [ 0.481, 0.094, 0.871 ], "y_axis": [ -0.643, -0.638, 0.424 ], "z_axis": [ 0.595, -0.765, -0.247 ], "quaternion": [ 0.386, 0.769, -0.179, 0.477 ] } }, { "index": 1024, "nt1": "///A/2491", "nt2": "///A/2518", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.296, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.349, "chi2": -80.826, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 69.764, "C1C1_dist": 9.934, "N1N9_dist": 8.450, "C6C8_dist": 9.370, "CNNC_torsion": -0.353, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.55],O4(carbonyl)-N1(imino)[2.86]", "interBase_angle": 41.737, "planarity": 0.482, "simple_Shear": -1.046, "simple_Stretch": 0.002, "simple_Buckle": -37.070, "simple_Propeller": 19.176, "bp_simpleParams": [ -1.046, 0.002, 0.307, -37.070, 19.176, 0.205 ], "bp_params": [ -1.036, -0.139, 0.307, -39.468, 13.572, 0.194 ], "frame": { "rmsd": null, "origin": [ 223.582, 156.860, 146.557 ], "x_axis": [ -0.022, -0.197, 0.980 ], "y_axis": [ -0.907, -0.408, -0.103 ], "z_axis": [ 0.421, -0.891, -0.170 ], "quaternion": [ 0.316, 0.624, -0.443, 0.561 ] } }, { "index": 1025, "nt1": "///A/2493", "nt2": "///A/2517", "bp": "C-A", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.439, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 58.860, "chi2": -127.503, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 41.011, "C1C1_dist": 10.112, "N1N9_dist": 8.239, "C6C8_dist": 8.852, "CNNC_torsion": 9.930, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)*N1[2.91],N3-N6(amino)[2.46]", "unusual_base2base_hbonds": 1, "interBase_angle": 30.942, "planarity": 0.540, "simple_Shear": 1.996, "simple_Stretch": -0.535, "simple_Buckle": -29.153, "simple_Propeller": -10.368, "bp_simpleParams": [ 1.996, -0.535, -0.872, -29.153, -10.368, -10.253 ], "bp_params": [ 1.840, -0.942, -0.872, -30.702, -3.841, -9.895 ], "frame": { "rmsd": null, "origin": [ 227.564, 153.783, 148.035 ], "x_axis": [ -0.970, 0.215, -0.114 ], "y_axis": [ -0.152, -0.901, -0.406 ], "z_axis": [ -0.190, -0.376, 0.907 ], "quaternion": [ 0.094, -0.078, -0.201, 0.972 ] } }, { "index": 1026, "nt1": "///A/2494", "nt2": "///A/2516", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -155.041, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 55.823, "chi2": -101.591, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.698, "C1C1_dist": 10.372, "N1N9_dist": 8.734, "C6C8_dist": 9.691, "CNNC_torsion": 8.338, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.68],N3-N1(imino)[2.85],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 6.755, "planarity": 0.256, "simple_Shear": 0.176, "simple_Stretch": -0.376, "simple_Buckle": -2.766, "simple_Propeller": 6.162, "bp_simpleParams": [ 0.176, -0.376, -1.045, -2.766, 6.162, 0.445 ], "bp_params": [ 0.171, -0.378, -1.045, -2.683, 6.199, 0.446 ], "frame": { "rmsd": null, "origin": [ 227.766, 152.571, 150.733 ], "x_axis": [ -0.930, 0.246, -0.274 ], "y_axis": [ -0.118, -0.904, -0.412 ], "z_axis": [ -0.349, -0.350, 0.869 ], "quaternion": [ 0.095, -0.162, -0.198, 0.962 ] } }, { "index": 1027, "nt1": "///A/2494", "nt2": "///A/2517", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -155.041, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 53.606, "chi2": -127.503, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.516, "C1C1_dist": 10.635, "N1N9_dist": 8.847, "C6C8_dist": 9.551, "CNNC_torsion": -14.469, "hbonds_num": 3, "hbonds_desc": "N3*N1[3.02],N4(amino)*N6(amino)[2.78],N4(amino)-N1[3.56]", "unusual_base2base_hbonds": 2, "interBase_angle": 20.554, "planarity": 0.381, "simple_Shear": -0.129, "simple_Stretch": -0.468, "simple_Buckle": -16.651, "simple_Propeller": 12.051, "bp_simpleParams": [ -0.129, -0.468, 1.973, -16.651, 12.051, -4.591 ], "bp_params": [ -0.117, -0.471, 1.973, -16.969, 11.598, -4.565 ], "frame": { "rmsd": null, "origin": [ 228.097, 152.971, 149.339 ], "x_axis": [ -0.948, 0.196, -0.249 ], "y_axis": [ -0.121, -0.950, -0.286 ], "z_axis": [ -0.293, -0.241, 0.925 ], "quaternion": [ 0.081, -0.139, -0.135, 0.978 ] } }, { "index": 1028, "nt1": "///A/2496", "nt2": "///A/2514", "bp": "C+G", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -114.885, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 75.843, "chi2": 18.208, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 45.117, "C1C1_dist": 7.422, "N1N9_dist": 6.033, "C6C8_dist": 5.714, "CNNC_torsion": -11.076, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O6(carbonyl)[2.49]", "interBase_angle": 59.913, "planarity": 0.564, "simple_Shear": -2.050, "simple_Stretch": 1.123, "simple_Buckle": 58.346, "simple_Propeller": 13.616, "bp_simpleParams": [ -2.050, 1.123, -2.547, 58.346, 13.616, -64.508 ], "bp_params": [ 0.307, 2.317, -2.547, 32.827, -50.120, -67.686 ], "frame": { "rmsd": null, "origin": [ 223.831, 147.509, 154.964 ], "x_axis": [ 0.152, -0.712, -0.686 ], "y_axis": [ 0.733, -0.384, 0.561 ], "z_axis": [ -0.662, -0.588, 0.464 ], "quaternion": [ 0.555, 0.518, 0.010, -0.651 ] } }, { "index": 1029, "nt1": "///A/2497", "nt2": "///A/2514", "bp": "A+G", "name": "--", "Saenger": "09-IX", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -101.638, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.058, "chi2": 18.208, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 70.816, "C1C1_dist": 8.764, "N1N9_dist": 7.339, "C6C8_dist": 7.016, "CNNC_torsion": 6.739, "hbonds_num": 1, "hbonds_desc": "N6(amino)-N7[2.55]", "interBase_angle": 72.409, "planarity": 1.066, "simple_Shear": -3.882, "simple_Stretch": 2.924, "simple_Buckle": 59.109, "simple_Propeller": 41.824, "bp_simpleParams": [ -3.882, 2.924, -0.400, 59.109, 41.824, -64.556 ], "bp_params": [ -1.925, 4.463, -0.400, 72.222, 5.203, -54.130 ], "frame": { "rmsd": null, "origin": [ 222.878, 146.368, 157.124 ], "x_axis": [ 0.495, -0.355, -0.793 ], "y_axis": [ 0.492, -0.638, 0.593 ], "z_axis": [ -0.717, -0.683, -0.141 ], "quaternion": [ 0.423, 0.754, 0.045, -0.501 ] } }, { "index": 1030, "nt1": "///A/2536", "nt2": "///A/2582", "bp": "C+G", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -167.828, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 73.783, "chi2": -162.891, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 69.829, "C1C1_dist": 9.271, "N1N9_dist": 8.804, "C6C8_dist": 11.125, "CNNC_torsion": -169.757, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.57]", "interBase_angle": 20.543, "planarity": 0.347, "simple_Shear": 6.981, "simple_Stretch": 3.934, "simple_Buckle": -18.637, "simple_Propeller": 8.640, "bp_simpleParams": [ 6.981, 3.934, -0.999, -18.637, 8.640, -173.774 ], "bp_params": [ -2.014, -7.756, -0.999, 19.136, 7.472, -173.699 ], "frame": { "rmsd": null, "origin": [ 202.586, 156.957, 188.269 ], "x_axis": [ -0.735, -0.192, -0.651 ], "y_axis": [ 0.651, 0.070, -0.756 ], "z_axis": [ 0.191, -0.979, 0.074 ], "quaternion": [ -0.320, -0.174, -0.658, 0.659 ] } }, { "index": 1031, "nt1": "///A/2542", "nt2": "///A/2600", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.894, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.162, "chi2": -166.302, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.391, "C1C1_dist": 10.689, "N1N9_dist": 8.837, "C6C8_dist": 9.623, "CNNC_torsion": 7.585, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.85],N1-N3(imino)[2.96]", "interBase_angle": 18.669, "planarity": 0.332, "simple_Shear": 0.272, "simple_Stretch": -0.373, "simple_Buckle": -15.561, "simple_Propeller": -10.315, "bp_simpleParams": [ 0.272, -0.373, -1.741, -15.561, -10.315, -3.050 ], "bp_params": [ 0.257, -0.383, -1.741, -15.964, -9.679, -3.032 ], "frame": { "rmsd": null, "origin": [ 190.866, 139.739, 187.964 ], "x_axis": [ 0.936, 0.330, 0.119 ], "y_axis": [ 0.037, -0.430, 0.902 ], "z_axis": [ 0.349, -0.840, -0.415 ], "quaternion": [ 0.522, 0.834, 0.110, 0.140 ] } }, { "index": 1032, "nt1": "///A/2543", "nt2": "///A/2599", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 170.741, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.114, "chi2": -162.945, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 45.605, "C1C1_dist": 10.717, "N1N9_dist": 8.774, "C6C8_dist": 9.509, "CNNC_torsion": 8.362, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.14],O2(carbonyl)-N2(amino)[3.27],N3(imino)-O6(carbonyl)[2.98]", "interBase_angle": 5.143, "planarity": 0.289, "simple_Shear": 1.129, "simple_Stretch": -0.459, "simple_Buckle": -4.607, "simple_Propeller": -2.287, "bp_simpleParams": [ 1.129, -0.459, -1.107, -4.607, -2.287, -8.382 ], "bp_params": [ 1.071, -0.580, -1.107, -4.831, -1.766, -8.376 ], "frame": { "rmsd": null, "origin": [ 191.678, 137.077, 185.297 ], "x_axis": [ 0.876, 0.162, 0.455 ], "y_axis": [ -0.358, -0.413, 0.837 ], "z_axis": [ 0.323, -0.896, -0.304 ], "quaternion": [ 0.538, 0.805, -0.061, 0.242 ] } }, { "index": 1033, "nt1": "///A/2544", "nt2": "///A/2598", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.976, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.306, "chi2": -174.056, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.022, "C1C1_dist": 10.658, "N1N9_dist": 8.889, "C6C8_dist": 9.827, "CNNC_torsion": -8.328, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.73],N3-N1(imino)[2.85],N4(amino)-O6(carbonyl)[2.88]", "interBase_angle": 7.806, "planarity": 0.110, "simple_Shear": 0.174, "simple_Stretch": -0.186, "simple_Buckle": -2.396, "simple_Propeller": -7.429, "bp_simpleParams": [ 0.174, -0.186, 0.031, -2.396, -7.429, 0.559 ], "bp_params": [ 0.172, -0.188, 0.031, -2.491, -7.398, 0.560 ], "frame": { "rmsd": null, "origin": [ 193.494, 134.558, 183.839 ], "x_axis": [ 0.474, 0.005, 0.881 ], "y_axis": [ -0.806, -0.401, 0.436 ], "z_axis": [ 0.355, -0.916, -0.186 ], "quaternion": [ 0.471, 0.718, -0.279, 0.431 ] } }, { "index": 1034, "nt1": "///A/2545", "nt2": "///A/2597", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.552, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.793, "chi2": -169.547, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.483, "C1C1_dist": 10.884, "N1N9_dist": 8.974, "C6C8_dist": 9.813, "CNNC_torsion": -17.375, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.83]", "interBase_angle": 8.921, "planarity": 0.205, "simple_Shear": -0.166, "simple_Stretch": -0.215, "simple_Buckle": -4.171, "simple_Propeller": -7.886, "bp_simpleParams": [ -0.166, -0.215, 0.661, -4.171, -7.886, -3.252 ], "bp_params": [ -0.164, -0.216, 0.661, -4.083, -7.932, -3.258 ], "frame": { "rmsd": null, "origin": [ 195.806, 132.398, 182.072 ], "x_axis": [ -0.046, -0.014, 0.999 ], "y_axis": [ -0.971, -0.235, -0.048 ], "z_axis": [ 0.235, -0.972, -0.003 ], "quaternion": [ 0.423, 0.546, -0.451, 0.565 ] } }, { "index": 1035, "nt1": "///A/2546", "nt2": "///A/2596", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 177.476, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 46.796, "chi2": -151.236, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.878, "C1C1_dist": 10.930, "N1N9_dist": 8.969, "C6C8_dist": 9.788, "CNNC_torsion": -14.997, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.85],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.85]", "interBase_angle": 4.762, "planarity": 0.192, "simple_Shear": 0.088, "simple_Stretch": -0.248, "simple_Buckle": 1.325, "simple_Propeller": -4.574, "bp_simpleParams": [ 0.088, -0.248, 0.780, 1.325, -4.574, -4.109 ], "bp_params": [ 0.087, -0.248, 0.780, 1.306, -4.579, -4.112 ], "frame": { "rmsd": null, "origin": [ 198.048, 129.431, 182.898 ], "x_axis": [ -0.427, -0.070, 0.901 ], "y_axis": [ -0.884, -0.178, -0.433 ], "z_axis": [ 0.191, -0.982, 0.014 ], "quaternion": [ 0.320, 0.429, -0.556, 0.636 ] } }, { "index": 1036, "nt1": "///A/2548", "nt2": "///A/2550", "bp": "U+C", "name": "--", "Saenger": "--", "LW": "c.H", "DSSR": "c.+M", "intra_chain": true, "chi1": -112.581, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 106.823, "chi2": -160.085, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 29.261, "C1C1_dist": 9.601, "N1N9_dist": 8.780, "C6C8_dist": 9.038, "CNNC_torsion": -42.775, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N4(amino)[3.32]", "interBase_angle": 30.141, "planarity": 0.400, "simple_Shear": -0.177, "simple_Stretch": 5.386, "simple_Buckle": 21.165, "simple_Propeller": -21.460, "bp_simpleParams": [ -0.177, 5.386, 1.722, 21.165, -21.460, -43.055 ], "bp_params": [ 5.362, 0.537, 1.722, -19.997, -22.552, -43.236 ], "frame": { "rmsd": null, "origin": [ 198.684, 122.382, 186.595 ], "x_axis": [ -0.689, -0.000, -0.725 ], "y_axis": [ 0.687, 0.319, -0.653 ], "z_axis": [ 0.232, -0.948, -0.220 ], "quaternion": [ 0.320, 0.230, 0.746, -0.536 ] } }, { "index": 1037, "nt1": "///A/2549", "nt2": "///A/2571", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -173.607, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 12.705, "chi2": -71.197, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 54.957, "C1C1_dist": 13.350, "N1N9_dist": 11.138, "C6C8_dist": 10.851, "CNNC_torsion": 122.273, "hbonds_num": 1, "hbonds_desc": "N4(amino)-N1[3.96]", "interBase_angle": 17.196, "planarity": 0.305, "simple_Shear": -5.090, "simple_Stretch": 3.629, "simple_Buckle": 17.118, "simple_Propeller": -1.636, "bp_simpleParams": [ -5.090, 3.629, -1.165, 17.118, -1.636, -55.400 ], "bp_params": [ -6.251, 0.050, -1.165, 14.950, 8.496, -55.129 ], "frame": { "rmsd": null, "origin": [ 199.767, 126.274, 185.179 ], "x_axis": [ -0.473, 0.109, -0.874 ], "y_axis": [ 0.869, 0.223, -0.443 ], "z_axis": [ 0.147, -0.969, -0.200 ], "quaternion": [ 0.371, 0.355, 0.689, -0.512 ] } }, { "index": 1038, "nt1": "///A/2549", "nt2": "///A/2574", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.607, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.408, "chi2": -169.558, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.590, "C1C1_dist": 10.621, "N1N9_dist": 8.925, "C6C8_dist": 9.895, "CNNC_torsion": -4.615, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 4.279, "planarity": 0.063, "simple_Shear": 0.180, "simple_Stretch": -0.120, "simple_Buckle": -3.350, "simple_Propeller": -2.662, "bp_simpleParams": [ 0.180, -0.120, 0.069, -3.350, -2.662, 1.737 ], "bp_params": [ 0.179, -0.122, 0.069, -3.387, -2.615, 1.736 ], "frame": { "rmsd": null, "origin": [ 201.292, 126.534, 188.019 ], "x_axis": [ -0.838, 0.136, -0.528 ], "y_axis": [ 0.544, 0.141, -0.827 ], "z_axis": [ -0.038, -0.981, -0.193 ], "quaternion": [ 0.166, 0.231, 0.737, -0.613 ] } }, { "index": 1039, "nt1": "///A/2550", "nt2": "///A/2573", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.085, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.644, "chi2": -172.540, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.752, "C1C1_dist": 10.659, "N1N9_dist": 8.953, "C6C8_dist": 9.917, "CNNC_torsion": -3.139, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.93],N4(amino)-O6(carbonyl)[2.97]", "interBase_angle": 2.339, "planarity": 0.111, "simple_Shear": 0.162, "simple_Stretch": -0.113, "simple_Buckle": 1.649, "simple_Propeller": 1.659, "bp_simpleParams": [ 0.162, -0.113, 0.404, 1.649, 1.659, 1.322 ], "bp_params": [ 0.161, -0.115, 0.404, 1.669, 1.639, 1.322 ], "frame": { "rmsd": null, "origin": [ 200.235, 123.297, 188.998 ], "x_axis": [ -0.411, 0.217, -0.886 ], "y_axis": [ 0.912, 0.087, -0.401 ], "z_axis": [ -0.010, -0.972, -0.234 ], "quaternion": [ 0.333, 0.429, 0.658, -0.522 ] } }, { "index": 1040, "nt1": "///A/2551", "nt2": "///A/2572", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.003, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 70.776, "chi2": -161.086, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 38.680, "C1C1_dist": 10.420, "N1N9_dist": 8.797, "C6C8_dist": 9.717, "CNNC_torsion": -0.467, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.71],N3(imino)-O6(carbonyl)[2.86]", "interBase_angle": 1.507, "planarity": 0.030, "simple_Shear": 2.767, "simple_Stretch": 0.109, "simple_Buckle": 1.089, "simple_Propeller": 1.042, "bp_simpleParams": [ 2.767, 0.109, 0.056, 1.089, 1.042, 1.182 ], "bp_params": [ 2.692, -0.648, 0.056, 1.331, 0.707, 1.182 ], "frame": { "rmsd": null, "origin": [ 199.046, 119.816, 188.223 ], "x_axis": [ 0.236, 0.229, -0.944 ], "y_axis": [ 0.969, -0.131, 0.210 ], "z_axis": [ -0.076, -0.965, -0.253 ], "quaternion": [ 0.461, 0.636, 0.471, -0.401 ] } }, { "index": 1041, "nt1": "///A/2552", "nt2": "///A/2569", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.605, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.685, "chi2": -154.354, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.338, "C1C1_dist": 10.569, "N1N9_dist": 8.878, "C6C8_dist": 9.831, "CNNC_torsion": -1.473, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.85],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 7.087, "planarity": 0.090, "simple_Shear": -0.170, "simple_Stretch": -0.188, "simple_Buckle": -3.543, "simple_Propeller": -6.138, "bp_simpleParams": [ -0.170, -0.188, -0.277, -3.543, -6.138, 1.011 ], "bp_params": [ -0.168, -0.190, -0.277, -3.468, -6.181, 1.012 ], "frame": { "rmsd": null, "origin": [ 200.299, 115.739, 181.732 ], "x_axis": [ 0.627, 0.757, -0.182 ], "y_axis": [ 0.350, -0.064, 0.935 ], "z_axis": [ 0.696, -0.650, -0.305 ], "quaternion": [ 0.561, 0.707, 0.392, 0.182 ] } }, { "index": 1042, "nt1": "///A/2553", "nt2": "///A/2568", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.799, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.652, "chi2": -174.998, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 47.913, "C1C1_dist": 10.914, "N1N9_dist": 8.989, "C6C8_dist": 9.835, "CNNC_torsion": -7.497, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.86],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.84]", "interBase_angle": 2.486, "planarity": 0.113, "simple_Shear": -0.094, "simple_Stretch": -0.185, "simple_Buckle": -1.199, "simple_Propeller": -2.178, "bp_simpleParams": [ -0.094, -0.185, 0.453, -1.199, -2.178, -3.006 ], "bp_params": [ -0.093, -0.185, 0.453, -1.189, -2.183, -3.007 ], "frame": { "rmsd": null, "origin": [ 201.978, 113.927, 179.371 ], "x_axis": [ 0.604, 0.688, 0.402 ], "y_axis": [ -0.134, -0.409, 0.902 ], "z_axis": [ 0.785, -0.599, -0.155 ], "quaternion": [ 0.510, 0.736, 0.188, 0.403 ] } }, { "index": 1043, "nt1": "///A/2554", "nt2": "///A/2567", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.574, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.106, "chi2": -164.425, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.407, "C1C1_dist": 10.785, "N1N9_dist": 8.937, "C6C8_dist": 9.824, "CNNC_torsion": 1.382, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.80]", "interBase_angle": 4.658, "planarity": 0.128, "simple_Shear": -0.177, "simple_Stretch": -0.205, "simple_Buckle": -2.783, "simple_Propeller": -3.736, "bp_simpleParams": [ -0.177, -0.205, -0.600, -2.783, -3.736, -0.801 ], "bp_params": [ -0.175, -0.207, -0.600, -2.738, -3.769, -0.801 ], "frame": { "rmsd": null, "origin": [ 205.516, 114.432, 176.205 ], "x_axis": [ 0.454, 0.566, 0.688 ], "y_axis": [ -0.206, -0.684, 0.700 ], "z_axis": [ 0.867, -0.459, -0.194 ], "quaternion": [ 0.380, 0.763, 0.118, 0.509 ] } }, { "index": 1044, "nt1": "///A/2555", "nt2": "///A/2566", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 168.655, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 40.626, "chi2": -164.074, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.098, "C1C1_dist": 10.792, "N1N9_dist": 8.764, "C6C8_dist": 9.389, "CNNC_torsion": 1.140, "hbonds_num": 4, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.75],O6(carbonyl)*O4(carbonyl)[2.54],N1(imino)-O2(carbonyl)[3.07],N2(amino)-O2(carbonyl)[3.19]", "unusual_base2base_hbonds": 1, "interBase_angle": 5.911, "planarity": 0.084, "simple_Shear": -0.985, "simple_Stretch": -0.493, "simple_Buckle": -5.670, "simple_Propeller": 1.672, "bp_simpleParams": [ -0.985, -0.493, -0.386, -5.670, 1.672, -13.300 ], "bp_params": [ -0.933, -0.585, -0.386, -5.804, 1.123, -13.284 ], "frame": { "rmsd": null, "origin": [ 208.607, 113.866, 174.060 ], "x_axis": [ 0.218, 0.159, 0.963 ], "y_axis": [ -0.445, -0.862, 0.243 ], "z_axis": [ 0.869, -0.481, -0.117 ], "quaternion": [ 0.244, 0.741, -0.097, 0.618 ] } }, { "index": 1045, "nt1": "///A/2556", "nt2": "///A/2565", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.583, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.084, "chi2": -166.416, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.730, "C1C1_dist": 10.703, "N1N9_dist": 8.921, "C6C8_dist": 9.857, "CNNC_torsion": 6.072, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 6.091, "planarity": 0.092, "simple_Shear": 0.173, "simple_Stretch": -0.160, "simple_Buckle": 3.528, "simple_Propeller": 4.965, "bp_simpleParams": [ 0.173, -0.160, -0.352, 3.528, 4.965, 0.451 ], "bp_params": [ 0.171, -0.162, -0.352, 3.595, 4.917, 0.451 ], "frame": { "rmsd": null, "origin": [ 211.937, 113.645, 174.822 ], "x_axis": [ -0.134, -0.336, 0.932 ], "y_axis": [ -0.471, -0.806, -0.359 ], "z_axis": [ 0.872, -0.487, -0.050 ], "quaternion": [ 0.049, 0.656, -0.307, 0.687 ] } }, { "index": 1046, "nt1": "///A/2557", "nt2": "///A/2564", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.790, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 81.946, "chi2": 162.918, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 31.738, "C1C1_dist": 9.885, "N1N9_dist": 8.450, "C6C8_dist": 9.428, "CNNC_torsion": 2.618, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)*O6(carbonyl)[2.09],O2(carbonyl)-N1(imino)[2.58],N3(imino)-O6(carbonyl)[2.92]", "unusual_base2base_hbonds": 1, "interBase_angle": 4.846, "planarity": 0.063, "simple_Shear": 4.257, "simple_Stretch": 0.417, "simple_Buckle": 2.292, "simple_Propeller": 4.269, "bp_simpleParams": [ 4.257, 0.417, -0.133, 2.292, 4.269, 8.615 ], "bp_params": [ 4.035, -1.417, -0.133, 3.879, 2.904, 8.613 ], "frame": { "rmsd": null, "origin": [ 214.926, 112.303, 176.190 ], "x_axis": [ -0.486, -0.838, 0.249 ], "y_axis": [ -0.124, -0.216, -0.968 ], "z_axis": [ 0.865, -0.502, 0.001 ], "quaternion": [ -0.273, 0.427, -0.563, 0.653 ] } }, { "index": 1047, "nt1": "///A/2560", "nt2": "///A/2687", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "intra_chain": true, "chi1": 166.556, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 94.403, "chi2": -178.623, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 136.986, "C1C1_dist": 5.788, "N1N9_dist": 7.008, "C6C8_dist": 9.475, "CNNC_torsion": -11.873, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.03],N3-O2'(hydroxyl)[2.95]", "interBase_angle": 36.968, "planarity": 0.434, "simple_Shear": -1.048, "simple_Stretch": 5.664, "simple_Buckle": -36.941, "simple_Propeller": -1.421, "bp_simpleParams": [ -1.048, 5.664, 0.756, -36.941, -1.421, 132.866 ], "bp_params": [ -2.210, 5.319, 0.756, -35.838, -9.069, 130.869 ], "frame": { "rmsd": null, "origin": [ 226.463, 104.752, 186.386 ], "x_axis": [ 0.636, 0.347, 0.689 ], "y_axis": [ 0.180, 0.802, -0.570 ], "z_axis": [ -0.750, 0.487, 0.447 ], "quaternion": [ 0.849, -0.311, -0.424, 0.049 ] } }, { "index": 1048, "nt1": "///A/2560", "nt2": "///A/2691", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": 166.556, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 20.319, "chi2": -170.153, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 26.205, "C1C1_dist": 12.885, "N1N9_dist": 10.246, "C6C8_dist": 10.131, "CNNC_torsion": 159.133, "hbonds_num": 2, "hbonds_desc": "N6(amino)-N1[2.29],N1-N6(amino)[2.40]", "interBase_angle": 44.701, "planarity": 0.571, "simple_Shear": -1.294, "simple_Stretch": 1.071, "simple_Buckle": -37.645, "simple_Propeller": 24.105, "bp_simpleParams": [ -1.294, 1.071, -0.149, -37.645, 24.105, 175.108 ], "bp_params": [ -0.846, -1.451, -0.149, -17.235, -41.245, 175.361 ], "frame": { "rmsd": null, "origin": [ 226.534, 107.278, 184.435 ], "x_axis": [ 0.619, -0.097, 0.779 ], "y_axis": [ 0.498, 0.816, -0.294 ], "z_axis": [ -0.607, 0.570, 0.554 ], "quaternion": [ 0.864, -0.250, -0.401, -0.172 ] } }, { "index": 1049, "nt1": "///A/2560", "nt2": "///A/2692", "bp": "A+G", "name": "--", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "intra_chain": true, "chi1": 166.556, "conf1": "--", "pucker1": "~C3'-endo", "lambda1": 32.785, "chi2": -173.983, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 85.479, "C1C1_dist": 11.440, "N1N9_dist": 10.296, "C6C8_dist": 11.661, "CNNC_torsion": -137.227, "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.34]", "interBase_angle": 49.962, "planarity": 0.626, "simple_Shear": 4.105, "simple_Stretch": 3.965, "simple_Buckle": -34.916, "simple_Propeller": 35.735, "bp_simpleParams": [ 4.105, 3.965, -0.250, -34.916, 35.735, 126.027 ], "bp_params": [ -1.646, 5.465, -0.250, -47.766, -14.649, 122.130 ], "frame": { "rmsd": null, "origin": [ 226.267, 104.796, 186.397 ], "x_axis": [ 0.700, 0.367, 0.613 ], "y_axis": [ 0.064, 0.822, -0.566 ], "z_axis": [ -0.712, 0.435, 0.551 ], "quaternion": [ 0.877, -0.285, -0.378, 0.086 ] } }, { "index": 1050, "nt1": "///A/2570", "nt2": "///A/2794", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -175.554, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 113.055, "chi2": 46.495, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 30.145, "C1C1_dist": 9.279, "N1N9_dist": 8.604, "C6C8_dist": 9.742, "CNNC_torsion": -11.201, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.16],N3-N6(amino)[2.47]", "interBase_angle": 4.730, "planarity": 0.218, "simple_Shear": 5.934, "simple_Stretch": 2.554, "simple_Buckle": 2.604, "simple_Propeller": 3.949, "bp_simpleParams": [ 5.934, 2.554, 0.961, 2.604, 3.949, 37.148 ], "bp_params": [ 6.195, -1.834, 0.961, 4.528, 1.369, 37.124 ], "frame": { "rmsd": null, "origin": [ 198.693, 118.266, 182.695 ], "x_axis": [ 0.489, 0.514, -0.705 ], "y_axis": [ -0.658, -0.313, -0.685 ], "z_axis": [ -0.572, 0.799, 0.186 ], "quaternion": [ 0.583, -0.636, 0.057, 0.502 ] } }, { "index": 1051, "nt1": "///A/2575", "nt2": "///A/2594", "bp": "U+A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -140.908, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 113.606, "chi2": -155.152, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.350, "C1C1_dist": 7.587, "N1N9_dist": 7.801, "C6C8_dist": 9.987, "CNNC_torsion": -173.461, "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-N1[2.54]", "interBase_angle": 16.796, "planarity": 0.201, "simple_Shear": 6.892, "simple_Stretch": 4.918, "simple_Buckle": 11.830, "simple_Propeller": 11.923, "bp_simpleParams": [ 6.892, 4.918, 0.280, 11.830, 11.923, -120.800 ], "bp_params": [ -2.549, -8.074, 0.280, -2.281, -16.640, -121.309 ], "frame": { "rmsd": null, "origin": [ 202.689, 128.878, 190.325 ], "x_axis": [ -0.532, 0.440, 0.724 ], "y_axis": [ 0.680, -0.287, 0.674 ], "z_axis": [ 0.505, 0.851, -0.146 ], "quaternion": [ -0.093, 0.475, 0.590, 0.647 ] } }, { "index": 1052, "nt1": "///A/2575", "nt2": "///A/2596", "bp": "U+G", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -140.908, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.377, "chi2": -151.236, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.074, "C1C1_dist": 9.266, "N1N9_dist": 7.493, "C6C8_dist": 6.564, "CNNC_torsion": -25.561, "hbonds_num": 1, "hbonds_desc": "N3(imino)-N7[3.59]", "interBase_angle": 47.508, "planarity": 0.564, "simple_Shear": -3.792, "simple_Stretch": 2.904, "simple_Buckle": 24.938, "simple_Propeller": -40.437, "bp_simpleParams": [ -3.792, 2.904, -0.129, 24.938, -40.437, -65.774 ], "bp_params": [ -0.884, 4.694, -0.129, -9.024, -46.644, -70.145 ], "frame": { "rmsd": null, "origin": [ 199.287, 129.695, 184.730 ], "x_axis": [ -0.867, 0.277, 0.415 ], "y_axis": [ 0.441, 0.036, 0.897 ], "z_axis": [ 0.233, 0.960, -0.154 ], "quaternion": [ -0.064, 0.250, 0.717, 0.647 ] } }, { "index": 1053, "nt1": "///A/2576", "nt2": "///A/2590", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -126.193, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 48.355, "chi2": -158.200, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.091, "C1C1_dist": 11.150, "N1N9_dist": 9.399, "C6C8_dist": 10.283, "CNNC_torsion": 11.359, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[3.29],O4(carbonyl)-N6(amino)[3.31]", "interBase_angle": 12.601, "planarity": 0.156, "simple_Shear": -0.969, "simple_Stretch": 0.388, "simple_Buckle": -0.233, "simple_Propeller": 12.599, "bp_simpleParams": [ -0.969, 0.388, -0.112, -0.233, 12.599, -3.013 ], "bp_params": [ -1.004, 0.287, -0.112, -1.523, 12.509, -3.031 ], "frame": { "rmsd": null, "origin": [ 215.357, 135.289, 195.102 ], "x_axis": [ 0.210, 0.177, -0.961 ], "y_axis": [ -0.975, -0.030, -0.219 ], "z_axis": [ -0.068, 0.984, 0.166 ], "quaternion": [ 0.580, -0.518, 0.385, 0.497 ] } }, { "index": 1054, "nt1": "///A/2577", "nt2": "///A/2589", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -153.580, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.131, "chi2": -158.993, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.385, "C1C1_dist": 10.780, "N1N9_dist": 9.009, "C6C8_dist": 9.940, "CNNC_torsion": -4.118, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.98],N1(imino)-N3[2.94],N2(amino)-O2(carbonyl)[2.82]", "interBase_angle": 7.014, "planarity": 0.112, "simple_Shear": -0.206, "simple_Stretch": -0.090, "simple_Buckle": -2.547, "simple_Propeller": -6.535, "bp_simpleParams": [ -0.206, -0.090, -0.383, -2.547, -6.535, 1.069 ], "bp_params": [ -0.205, -0.093, -0.383, -2.447, -6.573, 1.070 ], "frame": { "rmsd": null, "origin": [ 215.964, 139.052, 195.387 ], "x_axis": [ -0.395, -0.025, -0.918 ], "y_axis": [ -0.916, -0.063, 0.395 ], "z_axis": [ -0.067, 0.998, 0.002 ], "quaternion": [ 0.369, -0.408, 0.577, 0.604 ] } }, { "index": 1055, "nt1": "///A/2578", "nt2": "///A/2588", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.057, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.605, "chi2": -165.180, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.976, "C1C1_dist": 10.823, "N1N9_dist": 8.993, "C6C8_dist": 9.884, "CNNC_torsion": 5.166, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.82]", "interBase_angle": 3.316, "planarity": 0.107, "simple_Shear": -0.197, "simple_Stretch": -0.145, "simple_Buckle": 1.266, "simple_Propeller": 3.065, "bp_simpleParams": [ -0.197, -0.145, -0.421, 1.266, 3.065, -1.182 ], "bp_params": [ -0.195, -0.148, -0.421, 1.222, 3.083, -1.182 ], "frame": { "rmsd": null, "origin": [ 216.735, 142.133, 193.590 ], "x_axis": [ -0.757, -0.188, -0.625 ], "y_axis": [ -0.636, -0.004, 0.772 ], "z_axis": [ -0.148, 0.982, -0.117 ], "quaternion": [ 0.175, -0.301, 0.684, 0.641 ] } }, { "index": 1056, "nt1": "///A/2579", "nt2": "///A/2587", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.320, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.883, "chi2": -168.083, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.189, "C1C1_dist": 10.711, "N1N9_dist": 8.936, "C6C8_dist": 9.862, "CNNC_torsion": 6.556, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 4.862, "planarity": 0.115, "simple_Shear": -0.207, "simple_Stretch": -0.171, "simple_Buckle": 1.830, "simple_Propeller": 4.504, "bp_simpleParams": [ -0.207, -0.171, -0.411, 1.830, 4.504, -0.307 ], "bp_params": [ -0.204, -0.174, -0.411, 1.759, 4.532, -0.307 ], "frame": { "rmsd": null, "origin": [ 216.849, 145.092, 191.609 ], "x_axis": [ -0.961, -0.267, -0.069 ], "y_axis": [ -0.099, 0.102, 0.990 ], "z_axis": [ -0.258, 0.958, -0.125 ], "quaternion": [ -0.064, -0.124, 0.740, 0.658 ] } }, { "index": 1057, "nt1": "///A/2580", "nt2": "///A/2586", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.864, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.392, "chi2": 179.271, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.728, "C1C1_dist": 10.455, "N1N9_dist": 8.805, "C6C8_dist": 9.810, "CNNC_torsion": -0.564, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.68],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 7.195, "planarity": 0.215, "simple_Shear": 0.209, "simple_Stretch": -0.221, "simple_Buckle": 5.251, "simple_Propeller": 4.919, "bp_simpleParams": [ 0.209, -0.221, 0.623, 5.251, 4.919, 3.523 ], "bp_params": [ 0.205, -0.225, 0.623, 5.335, 4.827, 3.523 ], "frame": { "rmsd": null, "origin": [ 214.326, 147.986, 188.879 ], "x_axis": [ -0.879, -0.213, 0.426 ], "y_axis": [ 0.380, 0.226, 0.897 ], "z_axis": [ -0.287, 0.951, -0.118 ], "quaternion": [ -0.239, 0.056, 0.746, 0.620 ] } }, { "index": 1058, "nt1": "///A/2581", "nt2": "///A/2585", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -162.555, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.582, "chi2": -160.578, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 13.991, "C1C1_dist": 10.831, "N1N9_dist": 8.646, "C6C8_dist": 8.707, "CNNC_torsion": 86.774, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N4(amino)[2.94]", "interBase_angle": 16.331, "planarity": 0.297, "simple_Shear": 4.815, "simple_Stretch": 0.675, "simple_Buckle": -16.003, "simple_Propeller": -3.259, "bp_simpleParams": [ 4.815, 0.675, -0.833, -16.003, -3.259, -44.287 ], "bp_params": [ 4.478, -1.894, -0.833, -15.398, 5.442, -43.972 ], "frame": { "rmsd": null, "origin": [ 210.741, 151.222, 185.452 ], "x_axis": [ -0.028, -0.280, 0.960 ], "y_axis": [ 0.524, 0.814, 0.252 ], "z_axis": [ -0.851, 0.510, 0.124 ], "quaternion": [ 0.691, -0.093, -0.655, -0.291 ] } }, { "index": 1059, "nt1": "///A/2591", "nt2": "///A/2595", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": 178.952, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 21.981, "chi2": -90.024, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 11.645, "C1C1_dist": 10.337, "N1N9_dist": 7.572, "C6C8_dist": 6.429, "CNNC_torsion": -156.376, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.66],N3(imino)-N7[3.03],O4(carbonyl)*N7[2.51]", "unusual_base2base_hbonds": 1, "interBase_angle": 17.405, "planarity": 0.174, "simple_Shear": 3.052, "simple_Stretch": 0.683, "simple_Buckle": 14.325, "simple_Propeller": -9.886, "bp_simpleParams": [ 3.052, 0.683, -0.633, 14.325, -9.886, -97.874 ], "bp_params": [ 3.007, -0.857, -0.633, 7.888, -15.515, -98.261 ], "frame": { "rmsd": null, "origin": [ 211.197, 131.140, 195.106 ], "x_axis": [ 0.868, 0.317, -0.382 ], "y_axis": [ 0.448, -0.169, 0.878 ], "z_axis": [ 0.214, -0.933, -0.288 ], "quaternion": [ 0.594, 0.762, 0.251, -0.055 ] } }, { "index": 1060, "nt1": "///A/2617", "nt2": "///A/2635", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.549, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.511, "chi2": -164.285, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.136, "C1C1_dist": 10.572, "N1N9_dist": 8.877, "C6C8_dist": 9.867, "CNNC_torsion": 10.354, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.97],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 13.977, "planarity": 0.187, "simple_Shear": -0.223, "simple_Stretch": -0.145, "simple_Buckle": -3.102, "simple_Propeller": 13.629, "bp_simpleParams": [ -0.223, -0.145, -0.046, -3.102, 13.629, 2.372 ], "bp_params": [ -0.220, -0.149, -0.046, -3.354, 13.569, 2.388 ], "frame": { "rmsd": null, "origin": [ 208.132, 175.268, 191.575 ], "x_axis": [ -0.298, -0.462, -0.835 ], "y_axis": [ -0.690, 0.709, -0.146 ], "z_axis": [ 0.659, 0.533, -0.530 ], "quaternion": [ 0.469, -0.362, 0.796, 0.122 ] } }, { "index": 1061, "nt1": "///A/2618", "nt2": "///A/2634", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -157.148, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.685, "chi2": -162.536, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.088, "C1C1_dist": 10.366, "N1N9_dist": 8.798, "C6C8_dist": 9.841, "CNNC_torsion": 7.856, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.08],N1-N3(imino)[2.84]", "interBase_angle": 4.911, "planarity": 0.133, "simple_Shear": 0.009, "simple_Stretch": -0.115, "simple_Buckle": -0.007, "simple_Propeller": 4.911, "bp_simpleParams": [ 0.009, -0.115, -0.553, -0.007, 4.911, 3.741 ], "bp_params": [ 0.008, -0.115, -0.553, 0.022, 4.911, 3.744 ], "frame": { "rmsd": null, "origin": [ 210.727, 175.097, 189.048 ], "x_axis": [ -0.760, -0.127, -0.638 ], "y_axis": [ -0.344, 0.911, 0.228 ], "z_axis": [ 0.552, 0.393, -0.736 ], "quaternion": [ 0.322, -0.128, 0.923, 0.168 ] } }, { "index": 1062, "nt1": "///A/2619", "nt2": "///A/2633", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.246, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.005, "chi2": -163.526, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.249, "C1C1_dist": 10.426, "N1N9_dist": 8.782, "C6C8_dist": 9.796, "CNNC_torsion": 6.641, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.04],N1-N3(imino)[2.84]", "interBase_angle": 7.654, "planarity": 0.170, "simple_Shear": -0.055, "simple_Stretch": -0.144, "simple_Buckle": 6.165, "simple_Propeller": 4.536, "bp_simpleParams": [ -0.055, -0.144, -0.506, 6.165, 4.536, 2.718 ], "bp_params": [ -0.055, -0.144, -0.506, 6.169, 4.530, 2.717 ], "frame": { "rmsd": null, "origin": [ 212.982, 175.020, 185.940 ], "x_axis": [ -0.865, 0.271, -0.423 ], "y_axis": [ 0.041, 0.878, 0.478 ], "z_axis": [ 0.501, 0.396, -0.770 ], "quaternion": [ 0.247, 0.083, 0.937, 0.233 ] } }, { "index": 1063, "nt1": "///A/2620", "nt2": "///A/2632", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.794, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 64.029, "chi2": -179.214, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.195, "C1C1_dist": 10.629, "N1N9_dist": 9.119, "C6C8_dist": 10.273, "CNNC_torsion": 2.844, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[3.33],N4(amino)-O6(carbonyl)[3.78]", "interBase_angle": 10.853, "planarity": 0.124, "simple_Shear": 0.840, "simple_Stretch": 0.368, "simple_Buckle": 10.810, "simple_Propeller": 0.958, "bp_simpleParams": [ 0.840, 0.368, -0.506, 10.810, 0.958, 11.267 ], "bp_params": [ 0.866, 0.300, -0.506, 10.852, 0.101, 11.217 ], "frame": { "rmsd": null, "origin": [ 213.489, 175.617, 182.350 ], "x_axis": [ -0.689, 0.724, -0.026 ], "y_axis": [ 0.579, 0.571, 0.582 ], "z_axis": [ 0.437, 0.386, -0.813 ], "quaternion": [ 0.132, 0.372, 0.876, 0.276 ] } }, { "index": 1064, "nt1": "///A/2621", "nt2": "///A/2630", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.750, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.314, "chi2": -156.818, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.207, "C1C1_dist": 10.513, "N1N9_dist": 8.856, "C6C8_dist": 9.836, "CNNC_torsion": 9.813, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.84],N2(amino)-O2(carbonyl)[2.71]", "interBase_angle": 12.266, "planarity": 0.166, "simple_Shear": -0.203, "simple_Stretch": -0.178, "simple_Buckle": -3.457, "simple_Propeller": 11.769, "bp_simpleParams": [ -0.203, -0.178, -0.059, -3.457, 11.769, 1.775 ], "bp_params": [ -0.200, -0.181, -0.059, -3.654, 11.709, 1.784 ], "frame": { "rmsd": null, "origin": [ 213.100, 176.543, 178.113 ], "x_axis": [ -0.375, 0.869, 0.322 ], "y_axis": [ 0.843, 0.175, 0.508 ], "z_axis": [ 0.386, 0.462, -0.799 ], "quaternion": [ 0.021, 0.559, 0.766, 0.317 ] } }, { "index": 1065, "nt1": "///A/2622", "nt2": "///A/2629", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.828, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.309, "chi2": -167.943, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.712, "C1C1_dist": 10.278, "N1N9_dist": 8.716, "C6C8_dist": 9.783, "CNNC_torsion": 9.212, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.78],O4(carbonyl)-N6(amino)[3.05]", "interBase_angle": 15.637, "planarity": 0.198, "simple_Shear": 0.042, "simple_Stretch": -0.142, "simple_Buckle": 4.349, "simple_Propeller": 15.020, "bp_simpleParams": [ 0.042, -0.142, 0.160, 4.349, 15.020, 5.836 ], "bp_params": [ 0.042, -0.142, 0.160, 4.348, 15.020, 5.882 ], "frame": { "rmsd": null, "origin": [ 212.883, 178.821, 175.195 ], "x_axis": [ 0.067, 0.761, 0.645 ], "y_axis": [ 0.910, -0.312, 0.274 ], "z_axis": [ 0.409, 0.569, -0.713 ], "quaternion": [ -0.102, 0.723, 0.578, 0.364 ] } }, { "index": 1066, "nt1": "///A/2623", "nt2": "///A/2628", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.632, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.381, "chi2": -172.905, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.977, "C1C1_dist": 10.705, "N1N9_dist": 8.956, "C6C8_dist": 9.902, "CNNC_torsion": -1.512, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.96]", "interBase_angle": 3.042, "planarity": 0.066, "simple_Shear": 0.220, "simple_Stretch": -0.124, "simple_Buckle": 1.033, "simple_Propeller": -2.861, "bp_simpleParams": [ 0.220, -0.124, -0.266, 1.033, -2.861, 1.077 ], "bp_params": [ 0.217, -0.127, -0.266, 0.985, -2.878, 1.077 ], "frame": { "rmsd": null, "origin": [ 212.546, 181.952, 173.668 ], "x_axis": [ 0.475, 0.309, 0.824 ], "y_axis": [ 0.805, -0.530, -0.266 ], "z_axis": [ 0.355, 0.790, -0.500 ], "quaternion": [ -0.334, 0.791, 0.352, 0.372 ] } }, { "index": 1067, "nt1": "///A/2643", "nt2": "///A/2644", "bp": "A+U", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -90.737, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 143.040, "chi2": -172.288, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 39.636, "C1C1_dist": 7.142, "N1N9_dist": 7.171, "C6C8_dist": 7.248, "CNNC_torsion": 1.622, "hbonds_num": 1, "hbonds_desc": "N3*O4(carbonyl)[3.02]", "interBase_angle": 9.884, "planarity": 0.187, "simple_Shear": -0.158, "simple_Stretch": 7.189, "simple_Buckle": 6.383, "simple_Propeller": 7.547, "bp_simpleParams": [ -0.158, 7.189, 0.495, 6.383, 7.547, 0.915 ], "bp_params": [ 7.188, 0.225, 0.495, 7.607, -6.311, 0.915 ], "frame": { "rmsd": null, "origin": [ 174.616, 152.766, 195.618 ], "x_axis": [ 0.910, -0.010, 0.414 ], "y_axis": [ -0.404, 0.193, 0.894 ], "z_axis": [ -0.089, -0.981, 0.171 ], "quaternion": [ 0.754, 0.622, -0.167, 0.131 ] } }, { "index": 1068, "nt1": "///A/2655", "nt2": "///A/2806", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.008, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.404, "chi2": -108.568, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.485, "C1C1_dist": 10.538, "N1N9_dist": 8.888, "C6C8_dist": 9.841, "CNNC_torsion": 4.525, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.89],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 6.190, "planarity": 0.105, "simple_Shear": 0.181, "simple_Stretch": -0.177, "simple_Buckle": 6.100, "simple_Propeller": 1.055, "bp_simpleParams": [ 0.181, -0.177, -0.568, 6.100, 1.055, 0.595 ], "bp_params": [ 0.179, -0.180, -0.568, 6.114, 0.968, 0.594 ], "frame": { "rmsd": null, "origin": [ 156.498, 129.094, 206.052 ], "x_axis": [ 0.479, -0.110, 0.871 ], "y_axis": [ -0.769, 0.426, 0.477 ], "z_axis": [ -0.423, -0.898, 0.119 ], "quaternion": [ 0.711, 0.483, -0.455, 0.231 ] } }, { "index": 1069, "nt1": "///A/2656", "nt2": "///A/2810", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tS.", "DSSR": "tm+.", "intra_chain": true, "chi1": -177.637, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 87.143, "chi2": -146.858, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.205, "C1C1_dist": 8.456, "N1N9_dist": 7.994, "C6C8_dist": 10.084, "CNNC_torsion": 162.736, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[2.65],N2(amino)-N3[3.38]", "interBase_angle": 40.043, "planarity": 0.483, "simple_Shear": 6.816, "simple_Stretch": 3.676, "simple_Buckle": 37.364, "simple_Propeller": -14.400, "bp_simpleParams": [ 6.816, 3.676, 2.017, 37.364, -14.400, -147.172 ], "bp_params": [ -2.336, -7.383, 2.017, -36.686, -16.048, -145.806 ], "frame": { "rmsd": null, "origin": [ 154.154, 124.735, 203.533 ], "x_axis": [ -0.675, 0.735, 0.064 ], "y_axis": [ -0.520, -0.411, -0.749 ], "z_axis": [ -0.524, -0.539, 0.660 ], "quaternion": [ 0.379, -0.139, -0.389, 0.828 ] } }, { "index": 1070, "nt1": "///A/2659", "nt2": "///A/2817", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.115, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.376, "chi2": -158.903, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.358, "C1C1_dist": 10.636, "N1N9_dist": 8.918, "C6C8_dist": 9.869, "CNNC_torsion": -0.052, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 5.557, "planarity": 0.112, "simple_Shear": -0.211, "simple_Stretch": -0.145, "simple_Buckle": -3.863, "simple_Propeller": 3.994, "bp_simpleParams": [ -0.211, -0.145, 0.214, -3.863, 3.994, 1.084 ], "bp_params": [ -0.209, -0.149, 0.214, -3.931, 3.928, 1.084 ], "frame": { "rmsd": null, "origin": [ 145.027, 113.527, 217.269 ], "x_axis": [ 0.401, -0.873, -0.276 ], "y_axis": [ -0.251, 0.184, -0.950 ], "z_axis": [ 0.881, 0.451, -0.146 ], "quaternion": [ 0.600, -0.584, 0.482, -0.259 ] } }, { "index": 1071, "nt1": "///A/2660", "nt2": "///A/2816", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.786, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.300, "chi2": 174.928, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.517, "C1C1_dist": 10.802, "N1N9_dist": 8.940, "C6C8_dist": 9.834, "CNNC_torsion": -4.545, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.89],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.79]", "interBase_angle": 5.661, "planarity": 0.156, "simple_Shear": -0.130, "simple_Stretch": -0.177, "simple_Buckle": -4.597, "simple_Propeller": 3.304, "bp_simpleParams": [ -0.130, -0.177, 0.426, -4.597, 3.304, -0.616 ], "bp_params": [ -0.128, -0.178, 0.426, -4.627, 3.262, -0.615 ], "frame": { "rmsd": null, "origin": [ 148.628, 113.949, 218.250 ], "x_axis": [ 0.113, -0.626, -0.772 ], "y_axis": [ -0.457, 0.657, -0.600 ], "z_axis": [ 0.882, 0.421, -0.211 ], "quaternion": [ 0.624, -0.409, 0.662, -0.068 ] } }, { "index": 1072, "nt1": "///A/2660", "nt2": "///A/2835", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -167.786, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 89.659, "chi2": -170.320, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 61.132, "C1C1_dist": 8.364, "N1N9_dist": 8.128, "C6C8_dist": 10.286, "CNNC_torsion": 175.523, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.31],N2(amino)-N3[3.62]", "interBase_angle": 40.615, "planarity": 0.578, "simple_Shear": 6.967, "simple_Stretch": 4.236, "simple_Buckle": -40.134, "simple_Propeller": -6.231, "bp_simpleParams": [ 6.967, 4.236, -2.447, -40.134, -6.231, -147.837 ], "bp_params": [ -2.363, -7.804, -2.447, 25.929, 31.261, -148.146 ], "frame": { "rmsd": null, "origin": [ 148.035, 117.934, 219.768 ], "x_axis": [ -0.207, 0.559, -0.803 ], "y_axis": [ -0.423, 0.689, 0.588 ], "z_axis": [ 0.882, 0.461, 0.093 ], "quaternion": [ 0.628, 0.051, 0.671, 0.391 ] } }, { "index": 1073, "nt1": "///A/2661", "nt2": "///A/2815", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.028, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.098, "chi2": -164.848, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.327, "C1C1_dist": 10.473, "N1N9_dist": 8.831, "C6C8_dist": 9.837, "CNNC_torsion": 0.284, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.02],N1-N3(imino)[2.85]", "interBase_angle": 7.367, "planarity": 0.138, "simple_Shear": 0.029, "simple_Stretch": -0.111, "simple_Buckle": -2.919, "simple_Propeller": 6.764, "bp_simpleParams": [ 0.029, -0.111, 0.423, -2.919, 6.764, 3.157 ], "bp_params": [ 0.029, -0.111, 0.423, -2.867, 6.787, 3.161 ], "frame": { "rmsd": null, "origin": [ 152.395, 112.890, 217.659 ], "x_axis": [ -0.157, -0.267, -0.951 ], "y_axis": [ -0.423, 0.888, -0.179 ], "z_axis": [ 0.892, 0.374, -0.253 ], "quaternion": [ 0.608, -0.228, 0.758, 0.064 ] } }, { "index": 1074, "nt1": "///A/2662", "nt2": "///A/2814", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.582, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.398, "chi2": -170.976, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.769, "C1C1_dist": 10.603, "N1N9_dist": 8.871, "C6C8_dist": 9.811, "CNNC_torsion": -0.616, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.98],N1-N3(imino)[2.88]", "interBase_angle": 11.189, "planarity": 0.177, "simple_Shear": 0.010, "simple_Stretch": -0.150, "simple_Buckle": 3.499, "simple_Propeller": 10.628, "bp_simpleParams": [ 0.010, -0.150, 0.711, 3.499, 10.628, 1.430 ], "bp_params": [ 0.009, -0.150, 0.711, 3.576, 10.602, 1.436 ], "frame": { "rmsd": null, "origin": [ 156.009, 112.344, 217.016 ], "x_axis": [ -0.431, 0.251, -0.866 ], "y_axis": [ -0.229, 0.898, 0.375 ], "z_axis": [ 0.873, 0.360, -0.330 ], "quaternion": [ 0.533, 0.007, 0.815, 0.225 ] } }, { "index": 1075, "nt1": "///A/2663", "nt2": "///A/2813", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.907, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.048, "chi2": -167.948, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.038, "C1C1_dist": 11.031, "N1N9_dist": 9.098, "C6C8_dist": 9.899, "CNNC_torsion": -4.384, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.91],N1-N3(imino)[2.96]", "interBase_angle": 7.050, "planarity": 0.081, "simple_Shear": 0.124, "simple_Stretch": -0.019, "simple_Buckle": -4.214, "simple_Propeller": -5.652, "bp_simpleParams": [ 0.124, -0.019, -0.261, -4.214, -5.652, -5.372 ], "bp_params": [ 0.123, -0.022, -0.261, -4.315, -5.575, -5.374 ], "frame": { "rmsd": null, "origin": [ 158.778, 112.175, 214.440 ], "x_axis": [ -0.642, 0.620, -0.451 ], "y_axis": [ 0.202, 0.704, 0.681 ], "z_axis": [ 0.740, 0.346, -0.577 ], "quaternion": [ 0.348, 0.241, 0.855, 0.300 ] } }, { "index": 1076, "nt1": "///A/2664", "nt2": "///A/2812", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.516, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.846, "chi2": -163.199, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.175, "C1C1_dist": 10.665, "N1N9_dist": 8.913, "C6C8_dist": 9.795, "CNNC_torsion": 6.129, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.92],O4(carbonyl)-N6(amino)[2.91]", "interBase_angle": 3.160, "planarity": 0.192, "simple_Shear": -0.104, "simple_Stretch": -0.180, "simple_Buckle": -2.017, "simple_Propeller": -2.433, "bp_simpleParams": [ -0.104, -0.180, -0.832, -2.017, -2.433, -2.704 ], "bp_params": [ -0.102, -0.181, -0.832, -1.980, -2.463, -2.704 ], "frame": { "rmsd": null, "origin": [ 160.799, 112.383, 211.224 ], "x_axis": [ -0.390, 0.918, -0.075 ], "y_axis": [ 0.520, 0.287, 0.805 ], "z_axis": [ 0.760, 0.274, -0.589 ], "quaternion": [ 0.278, 0.478, 0.753, 0.359 ] } }, { "index": 1077, "nt1": "///A/2665", "nt2": "///A/2811", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.156, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.874, "chi2": 177.132, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 33.445, "C1C1_dist": 10.752, "N1N9_dist": 8.891, "C6C8_dist": 9.591, "CNNC_torsion": -0.807, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.94],N3(imino)-O6(carbonyl)[2.73]", "interBase_angle": 2.627, "planarity": 0.033, "simple_Shear": 2.967, "simple_Stretch": 0.084, "simple_Buckle": 2.627, "simple_Propeller": 0.001, "bp_simpleParams": [ 2.967, 0.084, -0.003, 2.627, 0.001, -8.953 ], "bp_params": [ 2.861, -0.791, -0.003, 2.511, -0.771, -8.951 ], "frame": { "rmsd": null, "origin": [ 162.283, 113.726, 207.727 ], "x_axis": [ 0.060, 0.878, 0.474 ], "y_axis": [ 0.628, -0.402, 0.666 ], "z_axis": [ 0.775, 0.258, -0.576 ], "quaternion": [ 0.143, 0.714, 0.528, 0.438 ] } }, { "index": 1078, "nt1": "///A/2666", "nt2": "///A/2805", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -170.531, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 25.912, "chi2": -81.657, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 18.743, "C1C1_dist": 9.890, "N1N9_dist": 7.265, "C6C8_dist": 6.237, "CNNC_torsion": -170.878, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.91],N3(imino)-N7[2.95]", "interBase_angle": 8.365, "planarity": 0.261, "simple_Shear": 3.795, "simple_Stretch": 0.956, "simple_Buckle": 7.620, "simple_Propeller": -3.451, "bp_simpleParams": [ 3.795, 0.956, 0.910, 7.620, -3.451, -100.093 ], "bp_params": [ 3.597, -1.540, 0.910, 3.970, -7.363, -100.176 ], "frame": { "rmsd": null, "origin": [ 162.792, 114.226, 201.484 ], "x_axis": [ 0.337, -0.024, 0.941 ], "y_axis": [ 0.223, -0.969, -0.104 ], "z_axis": [ 0.915, 0.245, -0.321 ], "quaternion": [ -0.108, 0.810, 0.062, 0.573 ] } }, { "index": 1079, "nt1": "///A/2667", "nt2": "///A/2807", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -135.082, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 98.558, "chi2": -123.982, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 6.618, "C1C1_dist": 9.513, "N1N9_dist": 8.373, "C6C8_dist": 8.812, "CNNC_torsion": -141.052, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.97],N3-N6(amino)[3.06]", "interBase_angle": 18.786, "planarity": 0.247, "simple_Shear": 7.533, "simple_Stretch": 2.618, "simple_Buckle": -0.669, "simple_Propeller": 18.774, "bp_simpleParams": [ 7.533, 2.618, -0.012, -0.669, 18.774, -2.312 ], "bp_params": [ 6.780, -4.199, -0.012, 14.159, 12.347, -2.308 ], "frame": { "rmsd": null, "origin": [ 166.391, 115.713, 201.780 ], "x_axis": [ 0.551, -0.032, 0.834 ], "y_axis": [ 0.272, -0.938, -0.216 ], "z_axis": [ 0.789, 0.346, -0.508 ], "quaternion": [ -0.162, 0.866, 0.069, 0.469 ] } }, { "index": 1080, "nt1": "///A/2668", "nt2": "///A/2804", "bp": "A-A", "name": "~Sheared", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -174.302, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 4.942, "chi2": -172.334, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 92.713, "C1C1_dist": 10.128, "N1N9_dist": 8.837, "C6C8_dist": 9.170, "CNNC_torsion": -167.989, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.34],N6(amino)-N3[3.20]", "interBase_angle": 5.207, "planarity": 0.067, "simple_Shear": -7.332, "simple_Stretch": 2.801, "simple_Buckle": -5.186, "simple_Propeller": -0.467, "bp_simpleParams": [ -7.332, 2.801, -0.169, -5.186, -0.467, -12.259 ], "bp_params": [ -6.926, -3.692, -0.169, -3.052, -4.219, -12.263 ], "frame": { "rmsd": null, "origin": [ 169.525, 117.440, 200.640 ], "x_axis": [ 0.546, -0.237, 0.803 ], "y_axis": [ 0.120, -0.927, -0.355 ], "z_axis": [ 0.829, 0.290, -0.478 ], "quaternion": [ -0.188, 0.859, -0.034, 0.475 ] } }, { "index": 1081, "nt1": "///A/2669", "nt2": "///A/2803", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.740, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.455, "chi2": -166.626, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.028, "C1C1_dist": 10.528, "N1N9_dist": 8.910, "C6C8_dist": 9.899, "CNNC_torsion": 2.009, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 4.610, "planarity": 0.073, "simple_Shear": -0.167, "simple_Stretch": -0.124, "simple_Buckle": -1.068, "simple_Propeller": 4.484, "bp_simpleParams": [ -0.167, -0.124, 0.113, -1.068, 4.484, 1.941 ], "bp_params": [ -0.165, -0.127, 0.113, -1.126, 4.470, 1.943 ], "frame": { "rmsd": null, "origin": [ 173.353, 118.392, 200.697 ], "x_axis": [ 0.355, -0.907, 0.228 ], "y_axis": [ -0.367, -0.360, -0.858 ], "z_axis": [ 0.859, 0.221, -0.461 ], "quaternion": [ -0.366, 0.738, -0.432, 0.369 ] } }, { "index": 1082, "nt1": "///A/2670", "nt2": "///A/2802", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.712, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.445, "chi2": -165.740, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.048, "C1C1_dist": 10.441, "N1N9_dist": 8.803, "C6C8_dist": 9.779, "CNNC_torsion": 9.213, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.99],N1-N3(imino)[2.84]", "interBase_angle": 3.510, "planarity": 0.170, "simple_Shear": 0.106, "simple_Stretch": -0.194, "simple_Buckle": -2.093, "simple_Propeller": 2.818, "bp_simpleParams": [ 0.106, -0.194, -0.821, -2.093, 2.818, 0.907 ], "bp_params": [ 0.103, -0.196, -0.821, -2.050, 2.849, 0.907 ], "frame": { "rmsd": null, "origin": [ 177.164, 119.123, 201.175 ], "x_axis": [ 0.025, -0.969, -0.246 ], "y_axis": [ -0.402, 0.215, -0.890 ], "z_axis": [ 0.915, 0.121, -0.385 ], "quaternion": [ 0.463, -0.546, 0.627, -0.306 ] } }, { "index": 1083, "nt1": "///A/2671", "nt2": "///A/2801", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.877, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.976, "chi2": -164.774, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.627, "C1C1_dist": 10.502, "N1N9_dist": 8.846, "C6C8_dist": 9.829, "CNNC_torsion": 4.394, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.93],N1(imino)-N3[2.85],N2(amino)-O2(carbonyl)[2.69]", "interBase_angle": 1.570, "planarity": 0.110, "simple_Shear": -0.169, "simple_Stretch": -0.204, "simple_Buckle": -1.570, "simple_Propeller": -0.036, "bp_simpleParams": [ -0.169, -0.204, -0.539, -1.570, -0.036, 1.833 ], "bp_params": [ -0.166, -0.206, -0.539, -1.569, -0.056, 1.833 ], "frame": { "rmsd": null, "origin": [ 181.089, 118.320, 201.135 ], "x_axis": [ -0.192, -0.773, -0.604 ], "y_axis": [ -0.343, 0.630, -0.697 ], "z_axis": [ 0.919, 0.073, -0.387 ], "quaternion": [ 0.513, -0.376, 0.743, -0.210 ] } }, { "index": 1084, "nt1": "///A/2672", "nt2": "///A/2800", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.462, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.293, "chi2": -175.588, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.903, "C1C1_dist": 10.600, "N1N9_dist": 8.849, "C6C8_dist": 9.818, "CNNC_torsion": 4.806, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.86],N2(amino)-O2(carbonyl)[2.71]", "interBase_angle": 13.721, "planarity": 0.212, "simple_Shear": -0.189, "simple_Stretch": -0.167, "simple_Buckle": -8.021, "simple_Propeller": 11.132, "bp_simpleParams": [ -0.189, -0.167, 0.114, -8.021, 11.132, 2.291 ], "bp_params": [ -0.186, -0.170, 0.114, -8.209, 10.994, 2.296 ], "frame": { "rmsd": null, "origin": [ 184.443, 116.842, 200.446 ], "x_axis": [ -0.508, -0.290, -0.811 ], "y_axis": [ -0.214, 0.955, -0.207 ], "z_axis": [ 0.835, 0.068, -0.546 ], "quaternion": [ 0.475, -0.145, 0.867, -0.040 ] } }, { "index": 1085, "nt1": "///A/2675", "nt2": "///A/2703", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.092, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.926, "chi2": 177.779, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.809, "C1C1_dist": 10.633, "N1N9_dist": 8.892, "C6C8_dist": 9.850, "CNNC_torsion": 1.726, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.74],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 9.691, "planarity": 0.168, "simple_Shear": 0.153, "simple_Stretch": -0.143, "simple_Buckle": 7.556, "simple_Propeller": 6.068, "bp_simpleParams": [ 0.153, -0.143, 0.169, 7.556, 6.068, 1.700 ], "bp_params": [ 0.151, -0.145, 0.169, 7.632, 5.972, 1.698 ], "frame": { "rmsd": null, "origin": [ 202.960, 120.665, 203.259 ], "x_axis": [ -0.279, -0.789, 0.547 ], "y_axis": [ -0.749, -0.177, -0.638 ], "z_axis": [ 0.601, -0.588, -0.542 ], "quaternion": [ 0.021, -0.600, 0.641, -0.478 ] } }, { "index": 1086, "nt1": "///A/2676", "nt2": "///A/2702", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.589, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.329, "chi2": 175.936, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 40.235, "C1C1_dist": 10.546, "N1N9_dist": 8.464, "C6C8_dist": 9.073, "CNNC_torsion": 6.700, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.94],N3(imino)-O6(carbonyl)[2.56],O4(carbonyl)*O6(carbonyl)[2.23]", "unusual_base2base_hbonds": 1, "interBase_angle": 1.408, "planarity": 0.126, "simple_Shear": 0.837, "simple_Stretch": -0.825, "simple_Buckle": 1.229, "simple_Propeller": -0.686, "bp_simpleParams": [ 0.837, -0.825, -0.575, 1.229, -0.686, -14.575 ], "bp_params": [ 0.768, -0.889, -0.575, 1.170, -0.782, -14.575 ], "frame": { "rmsd": null, "origin": [ 206.361, 118.409, 203.941 ], "x_axis": [ -0.619, -0.747, 0.245 ], "y_axis": [ -0.444, 0.076, -0.893 ], "z_axis": [ 0.648, -0.661, -0.378 ], "quaternion": [ 0.140, -0.413, 0.720, -0.540 ] } }, { "index": 1087, "nt1": "///A/2677", "nt2": "///A/2701", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.108, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 44.502, "chi2": -160.919, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.442, "C1C1_dist": 10.699, "N1N9_dist": 8.879, "C6C8_dist": 9.664, "CNNC_torsion": -2.974, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.88],N1(imino)-O2(carbonyl)[3.05],N2(amino)-O2(carbonyl)[3.34]", "interBase_angle": 8.286, "planarity": 0.092, "simple_Shear": -1.466, "simple_Stretch": -0.197, "simple_Buckle": -8.120, "simple_Propeller": -1.652, "bp_simpleParams": [ -1.466, -0.197, -0.199, -8.120, -1.652, -7.339 ], "bp_params": [ -1.422, -0.404, -0.199, -7.802, -2.792, -7.324 ], "frame": { "rmsd": null, "origin": [ 209.264, 115.179, 205.187 ], "x_axis": [ -0.808, -0.579, -0.112 ], "y_axis": [ -0.131, 0.361, -0.923 ], "z_axis": [ 0.575, -0.731, -0.367 ], "quaternion": [ 0.216, -0.223, 0.796, -0.519 ] } }, { "index": 1088, "nt1": "///A/2678", "nt2": "///A/2700", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 179.535, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.021, "chi2": -178.569, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.534, "C1C1_dist": 11.002, "N1N9_dist": 9.038, "C6C8_dist": 9.837, "CNNC_torsion": 4.351, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.93],O4(carbonyl)-N6(amino)[2.88]", "interBase_angle": 0.495, "planarity": 0.107, "simple_Shear": -0.117, "simple_Stretch": -0.095, "simple_Buckle": 0.250, "simple_Propeller": 0.428, "bp_simpleParams": [ -0.117, -0.095, -0.508, 0.250, 0.428, -5.559 ], "bp_params": [ -0.116, -0.097, -0.508, 0.243, 0.432, -5.559 ], "frame": { "rmsd": null, "origin": [ 211.114, 112.204, 204.967 ], "x_axis": [ -0.734, -0.225, -0.641 ], "y_axis": [ 0.364, 0.667, -0.651 ], "z_axis": [ 0.573, -0.711, -0.407 ], "quaternion": [ 0.362, 0.041, 0.838, -0.406 ] } }, { "index": 1089, "nt1": "///A/2679", "nt2": "///A/2699", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.218, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.879, "chi2": -145.801, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.951, "C1C1_dist": 10.335, "N1N9_dist": 8.789, "C6C8_dist": 9.830, "CNNC_torsion": 0.569, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.61],N3-N1(imino)[2.82],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 4.082, "planarity": 0.057, "simple_Shear": 0.168, "simple_Stretch": -0.187, "simple_Buckle": 3.856, "simple_Propeller": -1.340, "bp_simpleParams": [ 0.168, -0.187, -0.292, 3.856, -1.340, 3.634 ], "bp_params": [ 0.165, -0.190, -0.292, 3.838, -1.390, 3.633 ], "frame": { "rmsd": null, "origin": [ 211.779, 109.104, 203.934 ], "x_axis": [ -0.464, 0.203, -0.862 ], "y_axis": [ 0.700, 0.681, -0.216 ], "z_axis": [ 0.543, -0.703, -0.458 ], "quaternion": [ 0.436, 0.280, 0.807, -0.285 ] } }, { "index": 1090, "nt1": "///A/2680", "nt2": "///A/2698", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -149.251, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.196, "chi2": 174.835, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.523, "C1C1_dist": 10.809, "N1N9_dist": 8.945, "C6C8_dist": 9.822, "CNNC_torsion": 0.425, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.87]", "interBase_angle": 5.615, "planarity": 0.064, "simple_Shear": 0.187, "simple_Stretch": -0.180, "simple_Buckle": 5.614, "simple_Propeller": -0.067, "bp_simpleParams": [ 0.187, -0.180, -0.228, 5.614, -0.067, -1.686 ], "bp_params": [ 0.184, -0.182, -0.228, 5.613, -0.143, -1.684 ], "frame": { "rmsd": null, "origin": [ 212.024, 105.516, 202.911 ], "x_axis": [ -0.132, 0.759, -0.638 ], "y_axis": [ 0.851, 0.416, 0.319 ], "z_axis": [ 0.508, -0.501, -0.701 ], "quaternion": [ 0.382, 0.537, 0.750, -0.061 ] } }, { "index": 1091, "nt1": "///A/2681", "nt2": "///A/2697", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.253, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 48.350, "chi2": -155.489, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 44.669, "C1C1_dist": 10.519, "N1N9_dist": 8.484, "C6C8_dist": 9.094, "CNNC_torsion": 4.822, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.86],N3(imino)*N1(imino)[2.61],O4(carbonyl)*O6(carbonyl)[2.10]", "unusual_base2base_hbonds": 2, "interBase_angle": 13.669, "planarity": 0.184, "simple_Shear": 0.438, "simple_Stretch": -0.802, "simple_Buckle": 13.440, "simple_Propeller": -2.487, "bp_simpleParams": [ 0.438, -0.802, -0.887, 13.440, -2.487, -14.335 ], "bp_params": [ 0.407, -0.818, -0.887, 13.336, -2.995, -14.244 ], "frame": { "rmsd": null, "origin": [ 212.192, 103.342, 200.553 ], "x_axis": [ 0.280, 0.877, -0.390 ], "y_axis": [ 0.851, -0.038, 0.525 ], "z_axis": [ 0.445, -0.478, -0.757 ], "quaternion": [ 0.348, 0.720, 0.600, 0.019 ] } }, { "index": 1092, "nt1": "///A/2683", "nt2": "///A/2696", "bp": "A+C", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "intra_chain": true, "chi1": -146.074, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 7.488, "chi2": -157.694, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 33.355, "C1C1_dist": 13.002, "N1N9_dist": 10.331, "C6C8_dist": 9.923, "CNNC_torsion": 43.406, "hbonds_num": 1, "hbonds_desc": "N6(amino)*N4(amino)[2.95]", "interBase_angle": 34.080, "planarity": 0.431, "simple_Shear": -3.345, "simple_Stretch": 1.233, "simple_Buckle": -1.160, "simple_Propeller": -34.060, "bp_simpleParams": [ -3.345, 1.233, -0.915, -1.160, -34.060, 141.866 ], "bp_params": [ 0.123, -3.563, -0.915, 31.959, 11.834, 140.632 ], "frame": { "rmsd": null, "origin": [ 215.792, 103.086, 194.437 ], "x_axis": [ -0.423, 0.847, -0.321 ], "y_axis": [ -0.844, -0.497, -0.200 ], "z_axis": [ -0.329, 0.187, 0.926 ], "quaternion": [ 0.501, -0.193, -0.004, 0.843 ] } }, { "index": 1093, "nt1": "///A/2684", "nt2": "///A/2685", "bp": "G+U", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -82.837, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 133.930, "chi2": -177.399, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 48.255, "C1C1_dist": 6.879, "N1N9_dist": 6.914, "C6C8_dist": 6.949, "CNNC_torsion": 8.060, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O4(carbonyl)[2.39]", "interBase_angle": 26.497, "planarity": 0.304, "simple_Shear": -0.039, "simple_Stretch": 7.157, "simple_Buckle": 14.228, "simple_Propeller": 22.353, "bp_simpleParams": [ -0.039, 7.157, -1.463, 14.228, 22.353, 3.230 ], "bp_params": [ 6.998, 1.504, -1.463, 24.826, -9.262, 3.165 ], "frame": { "rmsd": null, "origin": [ 221.386, 104.422, 191.635 ], "x_axis": [ 0.537, 0.801, 0.267 ], "y_axis": [ 0.579, -0.579, 0.574 ], "z_axis": [ 0.614, -0.154, -0.774 ], "quaternion": [ 0.214, 0.850, 0.406, 0.259 ] } }, { "index": 1094, "nt1": "///A/2686", "nt2": "///A/2693", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -170.903, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 10.325, "chi2": -167.344, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 98.200, "C1C1_dist": 9.065, "N1N9_dist": 7.929, "C6C8_dist": 8.431, "CNNC_torsion": -30.048, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.59],N6(amino)-O2'(hydroxyl)[2.89],N6(amino)-N3[2.62]", "interBase_angle": 14.367, "planarity": 0.191, "simple_Shear": -7.378, "simple_Stretch": 1.977, "simple_Buckle": -0.681, "simple_Propeller": 14.351, "bp_simpleParams": [ -7.378, 1.977, 0.051, -0.681, 14.351, 0.280 ], "bp_params": [ -6.329, -4.276, 0.051, -11.283, 8.895, 0.280 ], "frame": { "rmsd": null, "origin": [ 224.173, 102.939, 189.896 ], "x_axis": [ 0.745, 0.293, 0.600 ], "y_axis": [ 0.140, -0.947, 0.289 ], "z_axis": [ 0.653, -0.131, -0.746 ], "quaternion": [ 0.113, 0.927, 0.117, 0.338 ] } }, { "index": 1095, "nt1": "///A/2687", "nt2": "///A/2692", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.623, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.391, "chi2": -173.983, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.383, "C1C1_dist": 10.340, "N1N9_dist": 8.770, "C6C8_dist": 9.838, "CNNC_torsion": 7.903, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.61],N3-N1(imino)[2.84],N4(amino)-O6(carbonyl)[2.99]", "interBase_angle": 13.893, "planarity": 0.214, "simple_Shear": 0.228, "simple_Stretch": -0.164, "simple_Buckle": 2.117, "simple_Propeller": 13.730, "bp_simpleParams": [ 0.228, -0.164, 0.290, 2.117, 13.730, 6.750 ], "bp_params": [ 0.224, -0.168, 0.290, 2.378, 13.688, 6.797 ], "frame": { "rmsd": null, "origin": [ 226.775, 102.863, 188.505 ], "x_axis": [ 0.453, -0.685, 0.570 ], "y_axis": [ -0.604, -0.706, -0.369 ], "z_axis": [ 0.656, -0.176, -0.734 ], "quaternion": [ -0.057, 0.851, -0.379, 0.360 ] } }, { "index": 1096, "nt1": "///A/2688", "nt2": "///A/2691", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -175.205, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 98.910, "chi2": -170.153, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 20.165, "C1C1_dist": 7.817, "N1N9_dist": 6.783, "C6C8_dist": 7.234, "CNNC_torsion": -87.245, "hbonds_num": 3, "hbonds_desc": "N2(amino)-OP2[2.35],N2(amino)-N7[2.41],N3-N6(amino)[3.20]", "interBase_angle": 23.623, "planarity": 0.501, "simple_Shear": 7.625, "simple_Stretch": 1.168, "simple_Buckle": 16.526, "simple_Propeller": 16.879, "bp_simpleParams": [ 7.625, 1.168, 1.587, 16.526, 16.879, 0.266 ], "bp_params": [ 5.599, -5.306, 1.587, 23.468, -2.698, 0.260 ], "frame": { "rmsd": null, "origin": [ 228.426, 104.607, 186.361 ], "x_axis": [ -0.377, -0.906, 0.190 ], "y_axis": [ -0.718, 0.156, -0.678 ], "z_axis": [ 0.585, -0.392, -0.710 ], "quaternion": [ 0.132, -0.542, 0.749, -0.357 ] } }, { "index": 1097, "nt1": "///A/2704", "nt2": "///A/2761", "bp": "A-G", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.119, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 42.429, "chi2": -146.790, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 43.564, "C1C1_dist": 13.104, "N1N9_dist": 10.949, "C6C8_dist": 11.215, "CNNC_torsion": -11.246, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O6(carbonyl)[2.86],N1-N1(imino)[3.04]", "interBase_angle": 15.746, "planarity": 0.228, "simple_Shear": -0.112, "simple_Stretch": 1.602, "simple_Buckle": -9.319, "simple_Propeller": -12.692, "bp_simpleParams": [ -0.112, 1.602, -0.274, -9.319, -12.692, -22.216 ], "bp_params": [ -0.126, 1.601, -0.274, -9.197, -12.781, -22.282 ], "frame": { "rmsd": null, "origin": [ 199.552, 120.917, 204.937 ], "x_axis": [ 0.577, -0.536, 0.616 ], "y_axis": [ 0.636, 0.768, 0.074 ], "z_axis": [ -0.513, 0.349, 0.784 ], "quaternion": [ 0.884, -0.078, -0.319, -0.331 ] } }, { "index": 1098, "nt1": "///A/2705", "nt2": "///A/2760", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.899, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.764, "chi2": -148.403, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.487, "C1C1_dist": 10.587, "N1N9_dist": 8.861, "C6C8_dist": 9.826, "CNNC_torsion": -5.821, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 11.654, "planarity": 0.231, "simple_Shear": 0.251, "simple_Stretch": -0.180, "simple_Buckle": -6.396, "simple_Propeller": -9.742, "bp_simpleParams": [ 0.251, -0.180, -0.462, -6.396, -9.742, 2.418 ], "bp_params": [ 0.247, -0.186, -0.462, -6.606, -9.601, 2.423 ], "frame": { "rmsd": null, "origin": [ 198.022, 121.729, 208.169 ], "x_axis": [ 0.845, -0.073, 0.530 ], "y_axis": [ 0.285, 0.900, -0.330 ], "z_axis": [ -0.453, 0.430, 0.781 ], "quaternion": [ 0.939, -0.203, -0.262, -0.096 ] } }, { "index": 1099, "nt1": "///A/2706", "nt2": "///A/2759", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.129, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.759, "chi2": -154.660, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.799, "C1C1_dist": 10.545, "N1N9_dist": 8.825, "C6C8_dist": 9.738, "CNNC_torsion": 8.296, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 11.475, "planarity": 0.205, "simple_Shear": -0.158, "simple_Stretch": -0.291, "simple_Buckle": -11.424, "simple_Propeller": 1.085, "bp_simpleParams": [ -0.158, -0.291, -1.111, -11.424, 1.085, -0.551 ], "bp_params": [ -0.155, -0.292, -1.111, -11.436, 0.948, -0.548 ], "frame": { "rmsd": null, "origin": [ 195.841, 122.282, 211.899 ], "x_axis": [ 0.888, 0.376, 0.263 ], "y_axis": [ -0.174, 0.807, -0.564 ], "z_axis": [ -0.425, 0.455, 0.783 ], "quaternion": [ 0.932, -0.273, -0.185, 0.148 ] } }, { "index": 1100, "nt1": "///A/2707", "nt2": "///A/2758", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -155.152, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.710, "chi2": -159.405, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.298, "C1C1_dist": 10.803, "N1N9_dist": 8.967, "C6C8_dist": 9.843, "CNNC_torsion": 8.157, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.83],N3-N1(imino)[2.93],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 4.285, "planarity": 0.162, "simple_Shear": 0.117, "simple_Stretch": -0.193, "simple_Buckle": -1.028, "simple_Propeller": 4.160, "bp_simpleParams": [ 0.117, -0.193, -0.680, -1.028, 4.160, -1.986 ], "bp_params": [ 0.116, -0.194, -0.680, -0.999, 4.167, -1.987 ], "frame": { "rmsd": null, "origin": [ 194.904, 122.861, 215.036 ], "x_axis": [ 0.710, 0.687, -0.154 ], "y_axis": [ -0.607, 0.487, -0.627 ], "z_axis": [ -0.356, 0.539, 0.763 ], "quaternion": [ 0.860, -0.339, -0.059, 0.376 ] } }, { "index": 1101, "nt1": "///A/2708", "nt2": "///A/2757", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 172.906, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.429, "chi2": -165.827, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.458, "C1C1_dist": 10.847, "N1N9_dist": 8.987, "C6C8_dist": 9.842, "CNNC_torsion": -0.800, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.91],N1-N3(imino)[2.91]", "interBase_angle": 6.767, "planarity": 0.099, "simple_Shear": 0.023, "simple_Stretch": -0.089, "simple_Buckle": 0.302, "simple_Propeller": 6.760, "bp_simpleParams": [ 0.023, -0.089, 0.324, 0.302, 6.760, -2.658 ], "bp_params": [ 0.022, -0.089, 0.324, 0.353, 6.757, -2.663 ], "frame": { "rmsd": null, "origin": [ 195.248, 124.630, 217.970 ], "x_axis": [ 0.347, 0.752, -0.560 ], "y_axis": [ -0.869, 0.034, -0.493 ], "z_axis": [ -0.352, 0.658, 0.666 ], "quaternion": [ 0.716, -0.402, 0.073, 0.567 ] } }, { "index": 1102, "nt1": "///A/2709", "nt2": "///A/2756", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -154.394, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.047, "chi2": 177.664, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.491, "C1C1_dist": 10.710, "N1N9_dist": 8.948, "C6C8_dist": 9.882, "CNNC_torsion": -1.850, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.84],N3-N1(imino)[2.95],N4(amino)-O6(carbonyl)[2.98]", "interBase_angle": 8.720, "planarity": 0.203, "simple_Shear": 0.224, "simple_Stretch": -0.137, "simple_Buckle": 5.014, "simple_Propeller": 7.134, "bp_simpleParams": [ 0.224, -0.137, 0.515, 5.014, 7.134, 1.261 ], "bp_params": [ 0.222, -0.141, 0.515, 5.143, 7.041, 1.262 ], "frame": { "rmsd": null, "origin": [ 195.979, 127.631, 220.235 ], "x_axis": [ -0.212, 0.589, -0.780 ], "y_axis": [ -0.927, -0.373, -0.029 ], "z_axis": [ -0.308, 0.717, 0.625 ], "quaternion": [ 0.510, -0.366, 0.231, 0.743 ] } }, { "index": 1103, "nt1": "///A/2710", "nt2": "///A/2754", "bp": "C-A", "name": "~rHoogsteen", "Saenger": "25-XXV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -153.716, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 23.159, "chi2": -121.638, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 13.697, "C1C1_dist": 11.216, "N1N9_dist": 8.499, "C6C8_dist": 7.382, "CNNC_torsion": 162.406, "hbonds_num": 2, "hbonds_desc": "N3-N6(amino)[3.35],N4(amino)-N7[3.24]", "interBase_angle": 4.251, "planarity": 0.195, "simple_Shear": 2.976, "simple_Stretch": 1.335, "simple_Buckle": -4.177, "simple_Propeller": 0.792, "bp_simpleParams": [ 2.976, 1.335, -0.899, -4.177, 0.792, -95.841 ], "bp_params": [ 3.257, -0.181, -0.899, -3.347, 2.621, -95.832 ], "frame": { "rmsd": null, "origin": [ 198.849, 130.353, 223.822 ], "x_axis": [ -0.953, -0.048, -0.299 ], "y_axis": [ -0.240, -0.483, 0.842 ], "z_axis": [ -0.185, 0.874, 0.449 ], "quaternion": [ 0.056, -0.142, 0.505, 0.849 ] } }, { "index": 1104, "nt1": "///A/2711", "nt2": "///A/2756", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "cHS", "DSSR": "cM-m", "intra_chain": true, "chi1": -144.960, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 34.866, "chi2": 177.664, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 107.653, "C1C1_dist": 11.032, "N1N9_dist": 10.294, "C6C8_dist": 11.110, "CNNC_torsion": 21.457, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-N2(amino)[3.27]", "interBase_angle": 66.453, "planarity": 0.995, "simple_Shear": -5.344, "simple_Stretch": 4.927, "simple_Buckle": 49.048, "simple_Propeller": -44.836, "bp_simpleParams": [ -5.344, 4.927, -1.621, 49.048, -44.836, 30.395 ], "bp_params": [ -7.267, 0.145, -1.621, 66.450, -0.635, 25.606 ], "frame": { "rmsd": null, "origin": [ 197.328, 124.719, 222.438 ], "x_axis": [ -0.420, 0.536, -0.732 ], "y_axis": [ -0.889, -0.080, 0.451 ], "z_axis": [ 0.183, 0.840, 0.510 ], "quaternion": [ 0.503, -0.194, 0.455, 0.709 ] } }, { "index": 1105, "nt1": "///A/2713", "nt2": "///A/2754", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -155.314, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.127, "chi2": -121.638, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 53.649, "C1C1_dist": 10.649, "N1N9_dist": 8.918, "C6C8_dist": 9.852, "CNNC_torsion": -3.223, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.93],O4(carbonyl)-N6(amino)[3.01]", "interBase_angle": 11.560, "planarity": 0.196, "simple_Shear": -0.021, "simple_Stretch": -0.067, "simple_Buckle": -8.702, "simple_Propeller": -7.610, "bp_simpleParams": [ -0.021, -0.067, -0.418, -8.702, -7.610, 0.286 ], "bp_params": [ -0.020, -0.067, -0.418, -8.668, -7.648, 0.286 ], "frame": { "rmsd": null, "origin": [ 200.298, 130.611, 224.460 ], "x_axis": [ -0.829, -0.299, 0.473 ], "y_axis": [ 0.556, -0.352, 0.753 ], "z_axis": [ -0.059, 0.887, 0.458 ], "quaternion": [ -0.263, 0.127, 0.505, 0.812 ] } }, { "index": 1106, "nt1": "///A/2714", "nt2": "///A/2753", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 173.392, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 35.681, "chi2": -164.969, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 60.792, "C1C1_dist": 10.833, "N1N9_dist": 8.926, "C6C8_dist": 9.578, "CNNC_torsion": -4.317, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.78],N1(imino)-O2(carbonyl)[3.11]", "interBase_angle": 17.558, "planarity": 0.214, "simple_Shear": -2.431, "simple_Stretch": -0.063, "simple_Buckle": -15.369, "simple_Propeller": -8.490, "bp_simpleParams": [ -2.431, -0.063, -1.022, -15.369, -8.490, -9.632 ], "bp_params": [ -2.347, -0.634, -1.022, -12.956, -11.850, -9.623 ], "frame": { "rmsd": null, "origin": [ 197.647, 133.223, 226.050 ], "x_axis": [ -0.511, -0.797, 0.322 ], "y_axis": [ 0.767, -0.253, 0.589 ], "z_axis": [ -0.388, 0.548, 0.741 ], "quaternion": [ -0.494, -0.021, 0.359, 0.791 ] } }, { "index": 1107, "nt1": "///A/2715", "nt2": "///A/2752", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -155.908, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.513, "chi2": -141.150, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.625, "C1C1_dist": 10.635, "N1N9_dist": 8.885, "C6C8_dist": 9.754, "CNNC_torsion": 8.795, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.96],N2(amino)-O2(carbonyl)[2.84]", "interBase_angle": 16.587, "planarity": 0.247, "simple_Shear": -0.136, "simple_Stretch": -0.245, "simple_Buckle": -16.580, "simple_Propeller": 0.487, "bp_simpleParams": [ -0.136, -0.245, -1.314, -16.580, 0.487, -1.581 ], "bp_params": [ -0.134, -0.247, -1.314, -16.584, 0.333, -1.565 ], "frame": { "rmsd": null, "origin": [ 195.132, 136.077, 227.702 ], "x_axis": [ 0.105, -0.796, 0.596 ], "y_axis": [ 0.942, 0.271, 0.196 ], "z_axis": [ -0.318, 0.541, 0.779 ], "quaternion": [ 0.734, -0.118, -0.311, -0.592 ] } }, { "index": 1108, "nt1": "///A/2716", "nt2": "///A/2751", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.828, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.176, "chi2": -168.265, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 37.463, "C1C1_dist": 10.935, "N1N9_dist": 9.059, "C6C8_dist": 9.748, "CNNC_torsion": 3.890, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.13],N3(imino)-O6(carbonyl)[2.86]", "interBase_angle": 5.189, "planarity": 0.072, "simple_Shear": 2.104, "simple_Stretch": 0.018, "simple_Buckle": -1.346, "simple_Propeller": 5.012, "bp_simpleParams": [ 2.104, 0.018, -0.161, -1.346, 5.012, -10.070 ], "bp_params": [ 2.062, -0.419, -0.161, -0.277, 5.182, -10.080 ], "frame": { "rmsd": null, "origin": [ 193.531, 137.498, 230.071 ], "x_axis": [ 0.702, -0.510, 0.496 ], "y_axis": [ 0.689, 0.664, -0.292 ], "z_axis": [ -0.180, 0.547, 0.818 ], "quaternion": [ 0.892, -0.235, -0.189, -0.336 ] } }, { "index": 1109, "nt1": "///A/2717", "nt2": "///A/2750", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -172.492, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 98.830, "chi2": -178.977, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 7.157, "C1C1_dist": 9.493, "N1N9_dist": 8.360, "C6C8_dist": 8.807, "CNNC_torsion": -122.632, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[3.16],N2(amino)-N7[2.92],N3-N6(amino)[3.04]", "interBase_angle": 10.622, "planarity": 0.157, "simple_Shear": 7.564, "simple_Stretch": 2.596, "simple_Buckle": 3.356, "simple_Propeller": 10.078, "bp_simpleParams": [ 7.564, 2.596, 0.134, 3.356, 10.078, -3.011 ], "bp_params": [ 6.800, -4.208, 0.134, 9.921, 3.795, -3.002 ], "frame": { "rmsd": null, "origin": [ 193.529, 138.280, 233.347 ], "x_axis": [ 0.976, 0.214, 0.040 ], "y_axis": [ -0.156, 0.816, -0.556 ], "z_axis": [ -0.152, 0.537, 0.830 ], "quaternion": [ 0.952, -0.287, -0.051, 0.097 ] } }, { "index": 1110, "nt1": "///A/2720", "nt2": "///A/2747", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.538, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.279, "chi2": -172.745, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.455, "C1C1_dist": 10.795, "N1N9_dist": 8.935, "C6C8_dist": 9.808, "CNNC_torsion": 8.381, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 8.173, "planarity": 0.184, "simple_Shear": 0.194, "simple_Stretch": -0.202, "simple_Buckle": -6.369, "simple_Propeller": 5.121, "bp_simpleParams": [ 0.194, -0.202, -0.528, -6.369, 5.121, -1.984 ], "bp_params": [ 0.191, -0.205, -0.528, -6.303, 5.203, -1.983 ], "frame": { "rmsd": null, "origin": [ 198.115, 143.576, 240.013 ], "x_axis": [ -0.095, 0.776, -0.624 ], "y_axis": [ -0.956, 0.105, 0.276 ], "z_axis": [ 0.279, 0.622, 0.731 ], "quaternion": [ 0.660, -0.131, 0.342, 0.656 ] } }, { "index": 1111, "nt1": "///A/2721", "nt2": "///A/2746", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.373, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.532, "chi2": -154.926, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.462, "C1C1_dist": 10.816, "N1N9_dist": 8.965, "C6C8_dist": 9.831, "CNNC_torsion": 11.357, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.83],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.90]", "interBase_angle": 8.989, "planarity": 0.153, "simple_Shear": 0.183, "simple_Stretch": -0.192, "simple_Buckle": -1.210, "simple_Propeller": 8.907, "bp_simpleParams": [ 0.183, -0.192, -0.486, -1.210, 8.907, -2.792 ], "bp_params": [ 0.181, -0.195, -0.486, -1.091, 8.922, -2.801 ], "frame": { "rmsd": null, "origin": [ 201.068, 145.424, 241.981 ], "x_axis": [ -0.547, 0.656, -0.520 ], "y_axis": [ -0.812, -0.264, 0.520 ], "z_axis": [ 0.204, 0.707, 0.677 ], "quaternion": [ 0.465, -0.100, 0.389, 0.789 ] } }, { "index": 1112, "nt1": "///A/2722", "nt2": "///A/2745", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.834, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.719, "chi2": -163.765, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.174, "C1C1_dist": 10.494, "N1N9_dist": 8.844, "C6C8_dist": 9.845, "CNNC_torsion": -1.517, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.03],N1-N3(imino)[2.84]", "interBase_angle": 2.625, "planarity": 0.033, "simple_Shear": 0.022, "simple_Stretch": -0.089, "simple_Buckle": -2.092, "simple_Propeller": -1.586, "bp_simpleParams": [ 0.022, -0.089, 0.004, -2.092, -1.586, 2.181 ], "bp_params": [ 0.022, -0.089, 0.004, -2.103, -1.571, 2.181 ], "frame": { "rmsd": null, "origin": [ 202.074, 149.123, 242.605 ], "x_axis": [ -0.919, 0.264, -0.294 ], "y_axis": [ -0.394, -0.552, 0.735 ], "z_axis": [ 0.032, 0.791, 0.611 ], "quaternion": [ 0.188, -0.075, 0.435, 0.878 ] } }, { "index": 1113, "nt1": "///A/2723", "nt2": "///A/2744", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.611, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.994, "chi2": -166.311, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.058, "C1C1_dist": 10.667, "N1N9_dist": 8.898, "C6C8_dist": 9.823, "CNNC_torsion": -8.394, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.92],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 2.275, "planarity": 0.132, "simple_Shear": -0.218, "simple_Stretch": -0.204, "simple_Buckle": -1.367, "simple_Propeller": -1.819, "bp_simpleParams": [ -0.218, -0.204, 0.536, -1.367, -1.819, -0.523 ], "bp_params": [ -0.214, -0.208, 0.536, -1.335, -1.842, -0.523 ], "frame": { "rmsd": null, "origin": [ 202.754, 152.764, 243.333 ], "x_axis": [ -0.989, -0.102, 0.110 ], "y_axis": [ 0.149, -0.622, 0.769 ], "z_axis": [ -0.010, 0.776, 0.630 ], "quaternion": [ -0.070, 0.028, 0.429, 0.900 ] } }, { "index": 1114, "nt1": "///A/2724", "nt2": "///A/2743", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.306, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.097, "chi2": -177.672, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 41.841, "C1C1_dist": 10.628, "N1N9_dist": 8.872, "C6C8_dist": 9.706, "CNNC_torsion": -6.159, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.95],N3(imino)-O6(carbonyl)[2.89]", "interBase_angle": 0.794, "planarity": 0.125, "simple_Shear": 1.932, "simple_Stretch": -0.116, "simple_Buckle": 0.793, "simple_Propeller": 0.026, "bp_simpleParams": [ 1.932, -0.116, 0.563, 0.793, 0.026, -4.238 ], "bp_params": [ 1.875, -0.479, 0.563, 0.784, -0.124, -4.238 ], "frame": { "rmsd": null, "origin": [ 201.635, 156.040, 244.311 ], "x_axis": [ -0.648, -0.479, 0.592 ], "y_axis": [ 0.761, -0.376, 0.529 ], "z_axis": [ -0.030, 0.793, 0.608 ], "quaternion": [ -0.382, 0.173, 0.407, 0.811 ] } }, { "index": 1115, "nt1": "///A/2725", "nt2": "///A/2740", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.964, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.616, "chi2": -151.222, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.467, "C1C1_dist": 10.688, "N1N9_dist": 8.935, "C6C8_dist": 9.825, "CNNC_torsion": -3.105, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.97],O4(carbonyl)-N6(amino)[2.95]", "interBase_angle": 12.765, "planarity": 0.259, "simple_Shear": -0.128, "simple_Stretch": -0.125, "simple_Buckle": -8.087, "simple_Propeller": -9.876, "bp_simpleParams": [ -0.128, -0.125, -0.786, -8.087, -9.876, -1.079 ], "bp_params": [ -0.126, -0.127, -0.786, -7.939, -9.996, -1.080 ], "frame": { "rmsd": null, "origin": [ 200.849, 161.071, 243.741 ], "x_axis": [ -0.482, -0.787, 0.385 ], "y_axis": [ 0.774, -0.177, 0.608 ], "z_axis": [ -0.410, 0.591, 0.695 ], "quaternion": [ 0.509, 0.008, -0.390, -0.767 ] } }, { "index": 1116, "nt1": "///A/2726", "nt2": "///A/2739", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.917, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.063, "chi2": -164.546, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.390, "C1C1_dist": 10.559, "N1N9_dist": 8.896, "C6C8_dist": 9.872, "CNNC_torsion": -4.183, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.99],N1(imino)-N3[2.94],N2(amino)-O2(carbonyl)[2.78]", "interBase_angle": 5.503, "planarity": 0.185, "simple_Shear": -0.154, "simple_Stretch": -0.170, "simple_Buckle": 1.212, "simple_Propeller": 5.368, "bp_simpleParams": [ -0.154, -0.170, 0.779, 1.212, 5.368, 3.011 ], "bp_params": [ -0.152, -0.171, 0.779, 1.154, 5.380, 3.014 ], "frame": { "rmsd": null, "origin": [ 198.738, 162.847, 245.651 ], "x_axis": [ -0.018, -0.864, 0.504 ], "y_axis": [ 0.975, 0.095, 0.199 ], "z_axis": [ -0.220, 0.495, 0.841 ], "quaternion": [ 0.692, -0.107, -0.261, -0.664 ] } }, { "index": 1117, "nt1": "///A/2727", "nt2": "///A/2738", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.672, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 65.671, "chi2": -173.107, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 45.089, "C1C1_dist": 10.442, "N1N9_dist": 8.798, "C6C8_dist": 9.755, "CNNC_torsion": -3.001, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.91],O2(carbonyl)-N2(amino)[3.27],N3(imino)-O6(carbonyl)[3.02]", "interBase_angle": 8.985, "planarity": 0.212, "simple_Shear": 1.850, "simple_Stretch": -0.068, "simple_Buckle": 4.470, "simple_Propeller": 7.794, "bp_simpleParams": [ 1.850, -0.068, 0.563, 4.470, 7.794, 2.271 ], "bp_params": [ 1.806, -0.404, 0.563, 5.814, 6.850, 2.272 ], "frame": { "rmsd": null, "origin": [ 196.842, 163.455, 248.598 ], "x_axis": [ 0.604, -0.644, 0.470 ], "y_axis": [ 0.760, 0.643, -0.095 ], "z_axis": [ -0.241, 0.415, 0.878 ], "quaternion": [ 0.884, -0.144, -0.201, -0.397 ] } }, { "index": 1118, "nt1": "///A/2728", "nt2": "///A/2737", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.078, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 64.308, "chi2": -174.378, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 43.956, "C1C1_dist": 10.491, "N1N9_dist": 8.797, "C6C8_dist": 9.698, "CNNC_torsion": -8.933, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.83],O2(carbonyl)-N2(amino)[3.26],N3(imino)-O6(carbonyl)[2.91]", "interBase_angle": 5.892, "planarity": 0.093, "simple_Shear": 1.882, "simple_Stretch": -0.123, "simple_Buckle": 0.945, "simple_Propeller": -5.815, "bp_simpleParams": [ 1.882, -0.123, 0.271, 0.945, -5.815, -1.282 ], "bp_params": [ 1.827, -0.467, 0.271, -0.141, -5.890, -1.284 ], "frame": { "rmsd": null, "origin": [ 195.226, 162.859, 251.756 ], "x_axis": [ 0.958, -0.202, 0.205 ], "y_axis": [ 0.239, 0.956, -0.171 ], "z_axis": [ -0.161, 0.212, 0.964 ], "quaternion": [ 0.985, -0.097, -0.093, -0.112 ] } }, { "index": 1119, "nt1": "///A/2729", "nt2": "///A/2736", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -164.379, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.539, "chi2": -173.308, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.643, "C1C1_dist": 10.661, "N1N9_dist": 8.894, "C6C8_dist": 9.816, "CNNC_torsion": -3.734, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 4.308, "planarity": 0.086, "simple_Shear": 0.190, "simple_Stretch": -0.198, "simple_Buckle": -4.091, "simple_Propeller": 1.349, "bp_simpleParams": [ 0.190, -0.198, 0.457, -4.091, 1.349, -0.466 ], "bp_params": [ 0.187, -0.201, 0.457, -4.072, 1.406, -0.466 ], "frame": { "rmsd": null, "origin": [ 194.657, 161.691, 255.192 ], "x_axis": [ 0.964, 0.260, 0.047 ], "y_axis": [ -0.241, 0.940, -0.243 ], "z_axis": [ -0.107, 0.223, 0.969 ], "quaternion": [ 0.984, -0.118, -0.039, 0.127 ] } }, { "index": 1120, "nt1": "///A/2730", "nt2": "///A/2735", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 176.310, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 46.754, "chi2": -169.621, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.288, "C1C1_dist": 10.875, "N1N9_dist": 8.925, "C6C8_dist": 9.690, "CNNC_torsion": -10.159, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.96],O4(carbonyl)-N6(amino)[2.82]", "interBase_angle": 6.949, "planarity": 0.269, "simple_Shear": -0.113, "simple_Stretch": -0.258, "simple_Buckle": 6.779, "simple_Propeller": 1.526, "bp_simpleParams": [ -0.113, -0.258, 0.999, 6.779, 1.526, -7.059 ], "bp_params": [ -0.109, -0.260, 0.999, 6.756, 1.628, -7.047 ], "frame": { "rmsd": null, "origin": [ 194.537, 159.755, 258.732 ], "x_axis": [ 0.777, 0.608, -0.166 ], "y_axis": [ -0.623, 0.704, -0.340 ], "z_axis": [ -0.090, 0.367, 0.926 ], "quaternion": [ 0.923, -0.191, 0.021, 0.333 ] } }, { "index": 1121, "nt1": "///A/2748", "nt2": "///A/2897", "bp": "G+G", "name": "--", "Saenger": "--", "LW": "t.W", "DSSR": "t.+W", "intra_chain": true, "chi1": -163.278, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 90.560, "chi2": -94.529, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 7.178, "C1C1_dist": 12.816, "N1N9_dist": 11.489, "C6C8_dist": 12.312, "CNNC_torsion": 163.141, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O6(carbonyl)[3.32]", "interBase_angle": 12.381, "planarity": 0.182, "simple_Shear": 1.415, "simple_Stretch": 5.213, "simple_Buckle": 7.160, "simple_Propeller": -10.101, "bp_simpleParams": [ 1.415, 5.213, -0.218, 7.160, -10.101, -93.782 ], "bp_params": [ 4.829, -2.421, -0.218, -11.324, -5.007, -93.557 ], "frame": { "rmsd": null, "origin": [ 193.815, 142.797, 237.428 ], "x_axis": [ 0.943, -0.144, -0.298 ], "y_axis": [ 0.022, -0.871, 0.490 ], "z_axis": [ -0.331, -0.469, -0.819 ], "quaternion": [ 0.251, 0.953, -0.032, -0.165 ] } }, { "index": 1122, "nt1": "///A/2749", "nt2": "///A/2898", "bp": "U+A", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -171.273, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.310, "chi2": -110.425, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 42.363, "C1C1_dist": 8.805, "N1N9_dist": 7.025, "C6C8_dist": 6.736, "CNNC_torsion": 28.375, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N7[3.31],O4(carbonyl)-N6(amino)[2.85]", "interBase_angle": 20.035, "planarity": 0.383, "simple_Shear": -2.828, "simple_Stretch": 0.973, "simple_Buckle": -18.281, "simple_Propeller": -8.199, "bp_simpleParams": [ -2.828, 0.973, -0.893, -18.281, -8.199, -77.694 ], "bp_params": [ -0.475, 2.953, -0.893, -15.819, 12.295, -77.484 ], "frame": { "rmsd": null, "origin": [ 188.052, 140.241, 235.792 ], "x_axis": [ 0.882, 0.328, -0.339 ], "y_axis": [ 0.434, -0.846, 0.311 ], "z_axis": [ -0.184, -0.421, -0.888 ], "quaternion": [ 0.193, 0.951, 0.200, -0.138 ] } }, { "index": 1123, "nt1": "///A/2763", "nt2": "///A/2799", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.752, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 31.784, "chi2": -161.401, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 81.780, "C1C1_dist": 10.164, "N1N9_dist": 8.723, "C6C8_dist": 9.709, "CNNC_torsion": -6.193, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O2(carbonyl)[3.46]", "interBase_angle": 26.414, "planarity": 0.262, "simple_Shear": -4.402, "simple_Stretch": 0.879, "simple_Buckle": -24.747, "simple_Propeller": 9.234, "bp_simpleParams": [ -4.402, 0.879, -0.521, -24.747, 9.234, 4.952 ], "bp_params": [ -4.335, -1.168, -0.521, -26.261, -2.836, 4.824 ], "frame": { "rmsd": null, "origin": [ 188.848, 107.410, 198.675 ], "x_axis": [ -0.092, 0.914, -0.395 ], "y_axis": [ 0.995, 0.096, -0.009 ], "z_axis": [ 0.030, -0.394, -0.919 ], "quaternion": [ 0.146, 0.658, 0.726, -0.139 ] } }, { "index": 1124, "nt1": "///A/2764", "nt2": "///A/2798", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -176.036, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.979, "chi2": -153.029, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.071, "C1C1_dist": 10.622, "N1N9_dist": 8.852, "C6C8_dist": 9.741, "CNNC_torsion": 8.107, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.86],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 12.777, "planarity": 0.195, "simple_Shear": -0.143, "simple_Stretch": -0.271, "simple_Buckle": -12.668, "simple_Propeller": 1.671, "bp_simpleParams": [ -0.143, -0.271, -1.013, -12.668, 1.671, -1.739 ], "bp_params": [ -0.141, -0.273, -1.013, -12.685, 1.533, -1.728 ], "frame": { "rmsd": null, "origin": [ 187.567, 106.978, 195.005 ], "x_axis": [ 0.534, 0.765, -0.359 ], "y_axis": [ 0.845, -0.498, 0.195 ], "z_axis": [ -0.030, -0.408, -0.913 ], "quaternion": [ 0.176, 0.858, 0.469, -0.113 ] } }, { "index": 1125, "nt1": "///A/2765", "nt2": "///A/2797", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 173.257, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.599, "chi2": -157.484, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.316, "C1C1_dist": 10.557, "N1N9_dist": 8.847, "C6C8_dist": 9.815, "CNNC_torsion": 3.851, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.84],N2(amino)-O2(carbonyl)[2.69]", "interBase_angle": 5.745, "planarity": 0.086, "simple_Shear": -0.214, "simple_Stretch": -0.205, "simple_Buckle": -4.942, "simple_Propeller": 2.930, "bp_simpleParams": [ -0.214, -0.205, -0.411, -4.942, 2.930, 1.075 ], "bp_params": [ -0.211, -0.209, -0.411, -4.992, 2.844, 1.075 ], "frame": { "rmsd": null, "origin": [ 186.803, 107.169, 191.721 ], "x_axis": [ 0.878, 0.470, -0.084 ], "y_axis": [ 0.467, -0.808, 0.360 ], "z_axis": [ 0.101, -0.356, -0.929 ], "quaternion": [ 0.188, 0.951, 0.246, 0.005 ] } }, { "index": 1126, "nt1": "///A/2766", "nt2": "///A/2796", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -150.459, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.177, "chi2": -173.680, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.333, "C1C1_dist": 10.626, "N1N9_dist": 8.905, "C6C8_dist": 9.849, "CNNC_torsion": 12.078, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.95],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 7.805, "planarity": 0.186, "simple_Shear": -0.166, "simple_Stretch": -0.201, "simple_Buckle": 2.040, "simple_Propeller": 7.533, "bp_simpleParams": [ -0.166, -0.201, -0.694, 2.040, 7.533, -0.483 ], "bp_params": [ -0.164, -0.203, -0.694, 1.947, 7.558, -0.484 ], "frame": { "rmsd": null, "origin": [ 187.075, 108.077, 188.326 ], "x_axis": [ 0.954, -0.083, 0.287 ], "y_axis": [ -0.143, -0.970, 0.196 ], "z_axis": [ 0.262, -0.228, -0.938 ], "quaternion": [ 0.108, 0.983, -0.058, 0.140 ] } }, { "index": 1127, "nt1": "///A/2767", "nt2": "///A/2795", "bp": "A+G", "name": "--", "Saenger": "--", "LW": ".W.", "DSSR": ".W+.", "intra_chain": true, "chi1": -151.237, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.983, "chi2": -4.563, "conf2": "syn", "pucker2": "~C3'-endo", "lambda2": 7.744, "C1C1_dist": 12.862, "N1N9_dist": 10.592, "C6C8_dist": 10.567, "CNNC_torsion": 93.948, "hbonds_num": 1, "hbonds_desc": "N1*O6(carbonyl)[2.60]", "interBase_angle": 4.662, "planarity": 0.279, "simple_Shear": -1.699, "simple_Stretch": 1.990, "simple_Buckle": 3.948, "simple_Propeller": 2.480, "bp_simpleParams": [ -1.699, 1.990, -1.408, 3.948, 2.480, -123.814 ], "bp_params": [ 1.637, 2.042, -1.408, 3.176, -3.413, -123.817 ], "frame": { "rmsd": null, "origin": [ 189.495, 108.704, 185.526 ], "x_axis": [ -0.090, -0.993, 0.080 ], "y_axis": [ -0.905, 0.048, -0.423 ], "z_axis": [ 0.416, -0.110, -0.903 ], "quaternion": [ 0.118, -0.664, 0.714, -0.187 ] } }, { "index": 1128, "nt1": "///A/2768", "nt2": "///A/2793", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -169.071, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 28.931, "chi2": -166.533, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 13.951, "C1C1_dist": 10.056, "N1N9_dist": 7.410, "C6C8_dist": 6.382, "CNNC_torsion": 177.277, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.71],N3(imino)-N7[2.91]", "interBase_angle": 2.145, "planarity": 0.092, "simple_Shear": 3.832, "simple_Stretch": 0.926, "simple_Buckle": 1.147, "simple_Propeller": -1.813, "bp_simpleParams": [ 3.832, 0.926, -0.556, 1.147, -1.813, -96.049 ], "bp_params": [ 3.647, -1.497, -0.556, -0.134, -2.141, -96.059 ], "frame": { "rmsd": null, "origin": [ 192.319, 110.902, 182.530 ], "x_axis": [ -0.165, -0.985, 0.043 ], "y_axis": [ -0.871, 0.125, -0.474 ], "z_axis": [ 0.462, -0.116, -0.879 ], "quaternion": [ 0.142, -0.630, 0.736, -0.200 ] } }, { "index": 1129, "nt1": "///A/2770", "nt2": "///A/2792", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -168.801, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 8.525, "chi2": -168.298, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 99.433, "C1C1_dist": 9.266, "N1N9_dist": 8.148, "C6C8_dist": 8.635, "CNNC_torsion": -101.196, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.74],N6(amino)-O2'(hydroxyl)[2.76],N6(amino)-N3[2.81]", "interBase_angle": 0.634, "planarity": 0.043, "simple_Shear": -7.495, "simple_Stretch": 2.252, "simple_Buckle": 0.222, "simple_Propeller": 0.594, "bp_simpleParams": [ -7.495, 2.252, 0.191, 0.222, 0.594, -1.267 ], "bp_params": [ -6.574, -4.245, 0.191, -0.309, 0.554, -1.267 ], "frame": { "rmsd": null, "origin": [ 193.785, 105.806, 178.303 ], "x_axis": [ -0.745, -0.614, 0.260 ], "y_axis": [ -0.634, 0.531, -0.563 ], "z_axis": [ 0.208, -0.584, -0.785 ], "quaternion": [ -0.015, -0.357, 0.875, -0.328 ] } }, { "index": 1130, "nt1": "///A/2771", "nt2": "///A/2791", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 172.082, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.547, "chi2": -168.702, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 65.008, "C1C1_dist": 9.989, "N1N9_dist": 8.469, "C6C8_dist": 9.594, "CNNC_torsion": -3.281, "hbonds_num": 2, "hbonds_desc": "N1(imino)-O2(carbonyl)[2.75],N2(amino)-O2(carbonyl)[2.27]", "interBase_angle": 3.678, "planarity": 0.052, "simple_Shear": -1.033, "simple_Stretch": -0.341, "simple_Buckle": 2.351, "simple_Propeller": -2.829, "bp_simpleParams": [ -1.033, -0.341, 0.035, 2.351, -2.829, 8.156 ], "bp_params": [ -0.994, -0.441, 0.035, 2.618, -2.584, 8.156 ], "frame": { "rmsd": null, "origin": [ 193.324, 102.991, 176.488 ], "x_axis": [ -0.959, 0.096, -0.266 ], "y_axis": [ 0.235, 0.793, -0.563 ], "z_axis": [ 0.157, -0.602, -0.783 ], "quaternion": [ 0.113, 0.088, 0.940, -0.310 ] } }, { "index": 1131, "nt1": "///A/2772", "nt2": "///A/2790", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.897, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.400, "chi2": -177.526, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 59.520, "C1C1_dist": 10.035, "N1N9_dist": 8.580, "C6C8_dist": 9.740, "CNNC_torsion": -2.440, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.71],O4(carbonyl)-N6(amino)[3.09]", "interBase_angle": 5.353, "planarity": 0.061, "simple_Shear": 0.111, "simple_Stretch": -0.166, "simple_Buckle": 3.423, "simple_Propeller": -4.116, "bp_simpleParams": [ 0.111, -0.166, -0.113, 3.423, -4.116, 9.342 ], "bp_params": [ 0.110, -0.166, -0.113, 3.402, -4.134, 9.344 ], "frame": { "rmsd": null, "origin": [ 193.243, 99.675, 175.071 ], "x_axis": [ -0.624, 0.562, -0.542 ], "y_axis": [ 0.765, 0.581, -0.278 ], "z_axis": [ 0.159, -0.588, -0.793 ], "quaternion": [ 0.203, 0.383, 0.866, -0.250 ] } }, { "index": 1132, "nt1": "///A/2773", "nt2": "///A/2789", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.094, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.462, "chi2": -171.600, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.598, "C1C1_dist": 10.462, "N1N9_dist": 8.755, "C6C8_dist": 9.705, "CNNC_torsion": 6.980, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.89],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.71]", "interBase_angle": 11.459, "planarity": 0.230, "simple_Shear": -0.216, "simple_Stretch": -0.348, "simple_Buckle": -10.460, "simple_Propeller": -4.678, "bp_simpleParams": [ -0.216, -0.348, -1.197, -10.460, -4.678, 1.593 ], "bp_params": [ -0.211, -0.351, -1.197, -10.393, -4.825, 1.588 ], "frame": { "rmsd": null, "origin": [ 190.618, 96.769, 172.054 ], "x_axis": [ -0.354, 0.843, -0.405 ], "y_axis": [ 0.935, 0.324, -0.145 ], "z_axis": [ 0.009, -0.430, -0.903 ], "quaternion": [ 0.129, 0.553, 0.803, -0.179 ] } }, { "index": 1133, "nt1": "///A/2774", "nt2": "///A/2788", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.073, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.256, "chi2": -170.435, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.511, "C1C1_dist": 10.645, "N1N9_dist": 8.884, "C6C8_dist": 9.795, "CNNC_torsion": 6.137, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.87]", "interBase_angle": 12.141, "planarity": 0.214, "simple_Shear": 0.132, "simple_Stretch": -0.195, "simple_Buckle": -10.974, "simple_Propeller": 5.193, "bp_simpleParams": [ 0.132, -0.195, -0.395, -10.974, 5.193, -1.018 ], "bp_params": [ 0.131, -0.196, -0.395, -10.944, 5.256, -1.015 ], "frame": { "rmsd": null, "origin": [ 189.092, 94.916, 169.231 ], "x_axis": [ 0.292, 0.901, -0.321 ], "y_axis": [ 0.946, -0.224, 0.234 ], "z_axis": [ 0.139, -0.372, -0.918 ], "quaternion": [ 0.194, 0.780, 0.592, -0.058 ] } }, { "index": 1134, "nt1": "///A/2775", "nt2": "///A/2785", "bp": "U-U", "name": "Calcutta", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -172.342, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 26.951, "chi2": -116.193, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 3.840, "C1C1_dist": 11.121, "N1N9_dist": 8.372, "C6C8_dist": 7.609, "CNNC_torsion": 178.370, "hbonds_num": 1, "hbonds_desc": "N3(imino)-O4(carbonyl)[2.25]", "interBase_angle": 25.766, "planarity": 0.259, "simple_Shear": 2.967, "simple_Stretch": 0.591, "simple_Buckle": -6.554, "simple_Propeller": 24.918, "bp_simpleParams": [ 2.967, 0.591, 0.849, -6.554, 24.918, -81.431 ], "bp_params": [ 2.960, -0.624, 0.849, 3.867, 25.474, -82.813 ], "frame": { "rmsd": null, "origin": [ 187.519, 94.538, 165.924 ], "x_axis": [ 0.971, -0.054, 0.233 ], "y_axis": [ -0.110, -0.965, 0.237 ], "z_axis": [ 0.212, -0.256, -0.943 ], "quaternion": [ 0.125, 0.985, -0.042, 0.113 ] } }, { "index": 1135, "nt1": "///A/2775", "nt2": "///A/2787", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -172.342, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 68.738, "chi2": -176.162, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 17.552, "C1C1_dist": 11.010, "N1N9_dist": 9.116, "C6C8_dist": 9.491, "CNNC_torsion": 23.038, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.35]", "interBase_angle": 24.187, "planarity": 0.277, "simple_Shear": 5.015, "simple_Stretch": 1.072, "simple_Buckle": -14.274, "simple_Propeller": 19.525, "bp_simpleParams": [ 5.015, 1.072, 0.578, -14.274, 19.525, -18.491 ], "bp_params": [ 4.864, -1.625, 0.578, -2.320, 24.075, -18.895 ], "frame": { "rmsd": null, "origin": [ 187.182, 92.952, 166.200 ], "x_axis": [ 0.886, 0.458, 0.072 ], "y_axis": [ 0.399, -0.831, 0.387 ], "z_axis": [ 0.237, -0.315, -0.919 ], "quaternion": [ 0.184, 0.953, 0.225, 0.081 ] } }, { "index": 1136, "nt1": "///A/2776", "nt2": "///A/2786", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": 166.595, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 81.612, "chi2": 157.327, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 11.153, "C1C1_dist": 10.043, "N1N9_dist": 8.515, "C6C8_dist": 8.718, "CNNC_torsion": -128.148, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.55],N3-N6(amino)[3.18]", "interBase_angle": 2.459, "planarity": 0.325, "simple_Shear": 7.147, "simple_Stretch": 2.034, "simple_Buckle": 2.442, "simple_Propeller": -0.284, "bp_simpleParams": [ 7.147, 2.034, 1.673, 2.442, -0.284, -19.846 ], "bp_params": [ 6.315, -3.916, 1.673, 1.434, -1.997, -19.847 ], "frame": { "rmsd": null, "origin": [ 188.532, 94.092, 162.817 ], "x_axis": [ 0.823, -0.169, 0.543 ], "y_axis": [ -0.239, -0.969, 0.061 ], "z_axis": [ 0.515, -0.180, -0.838 ], "quaternion": [ 0.063, 0.953, -0.107, 0.278 ] } }, { "index": 1137, "nt1": "///A/2777", "nt2": "///A/2783", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -148.775, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 9.160, "chi2": -155.584, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 19.170, "C1C1_dist": 10.357, "N1N9_dist": 7.537, "C6C8_dist": 6.347, "CNNC_torsion": 175.685, "hbonds_num": 4, "hbonds_desc": "N7-N3(imino)[3.06],N7*O4(carbonyl)[2.22],N6(amino)-O2(carbonyl)[2.68],N6(amino)*N3(imino)[2.39]", "unusual_base2base_hbonds": 2, "interBase_angle": 27.540, "planarity": 0.329, "simple_Shear": -2.411, "simple_Stretch": 0.432, "simple_Buckle": -5.899, "simple_Propeller": -26.900, "bp_simpleParams": [ -2.411, 0.432, -0.609, -5.899, -26.900, -99.999 ], "bp_params": [ -2.381, -0.573, -0.609, 5.508, -26.983, -101.508 ], "frame": { "rmsd": null, "origin": [ 189.704, 95.999, 159.444 ], "x_axis": [ 0.551, -0.815, 0.180 ], "y_axis": [ -0.761, -0.579, -0.293 ], "z_axis": [ 0.343, 0.024, -0.939 ], "quaternion": [ -0.091, 0.876, -0.450, 0.149 ] } }, { "index": 1138, "nt1": "///A/2778", "nt2": "///A/2782", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -143.529, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 17.090, "chi2": -151.563, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 24.964, "C1C1_dist": 11.789, "N1N9_dist": 9.107, "C6C8_dist": 7.864, "CNNC_torsion": 172.347, "hbonds_num": 2, "hbonds_desc": "N7-N6(amino)[2.85],N6(amino)-N1[2.76]", "interBase_angle": 43.202, "planarity": 0.491, "simple_Shear": -3.216, "simple_Stretch": 2.612, "simple_Buckle": -19.813, "simple_Propeller": -38.391, "bp_simpleParams": [ -3.216, 2.612, -1.468, -19.813, -38.391, -98.970 ], "bp_params": [ -4.116, 0.477, -1.468, 4.404, -42.977, -102.978 ], "frame": { "rmsd": null, "origin": [ 190.524, 96.725, 156.405 ], "x_axis": [ 0.226, -0.965, -0.131 ], "y_axis": [ -0.934, -0.177, -0.311 ], "z_axis": [ 0.277, 0.192, -0.941 ], "quaternion": [ -0.164, 0.766, -0.620, 0.048 ] } }, { "index": 1139, "nt1": "///A/2779", "nt2": "///A/2781", "bp": "A+C", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "intra_chain": true, "chi1": -136.080, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 110.364, "chi2": -169.209, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 15.995, "C1C1_dist": 8.394, "N1N9_dist": 7.547, "C6C8_dist": 8.102, "CNNC_torsion": 33.612, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N4(amino)[2.23],N3-N4(amino)[2.62]", "interBase_angle": 29.883, "planarity": 0.493, "simple_Shear": 1.020, "simple_Stretch": 3.640, "simple_Buckle": 23.141, "simple_Propeller": -18.908, "bp_simpleParams": [ 1.020, 3.640, -0.396, 23.141, -18.908, -51.246 ], "bp_params": [ 3.253, -1.926, -0.396, -24.207, -17.522, -50.782 ], "frame": { "rmsd": null, "origin": [ 193.251, 97.050, 153.977 ], "x_axis": [ -0.910, 0.411, -0.055 ], "y_axis": [ -0.349, -0.831, -0.433 ], "z_axis": [ -0.224, -0.375, 0.900 ], "quaternion": [ 0.199, -0.073, -0.212, 0.954 ] } }, { "index": 1140, "nt1": "///A/2785", "nt2": "///A/2787", "bp": "U+A", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -116.193, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 64.486, "chi2": -176.162, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.358, "C1C1_dist": 7.949, "N1N9_dist": 6.419, "C6C8_dist": 5.972, "CNNC_torsion": -2.689, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N7[2.72],O4(carbonyl)-N6(amino)[2.96]", "interBase_angle": 7.662, "planarity": 0.186, "simple_Shear": -2.805, "simple_Stretch": 1.640, "simple_Buckle": -0.504, "simple_Propeller": 7.645, "bp_simpleParams": [ -2.805, 1.640, 0.511, -0.504, 7.645, -62.300 ], "bp_params": [ -0.265, 3.239, 0.511, 5.975, 4.796, -62.275 ], "frame": { "rmsd": null, "origin": [ 185.620, 92.839, 166.330 ], "x_axis": [ 0.957, -0.268, 0.108 ], "y_axis": [ 0.289, 0.905, -0.311 ], "z_axis": [ -0.014, 0.329, 0.944 ], "quaternion": [ 0.976, -0.164, -0.031, -0.143 ] } }, { "index": 1141, "nt1": "///A/2806", "nt2": "///A/2808", "bp": "G+U", "name": "--", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -108.568, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 134.909, "chi2": -130.461, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 40.326, "C1C1_dist": 6.866, "N1N9_dist": 6.866, "C6C8_dist": 6.808, "CNNC_torsion": 60.603, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O4(carbonyl)[3.25]", "interBase_angle": 41.729, "planarity": 0.540, "simple_Shear": -0.069, "simple_Stretch": 7.584, "simple_Buckle": -38.528, "simple_Propeller": 16.029, "bp_simpleParams": [ -0.069, 7.584, -1.157, -38.528, 16.029, 9.305 ], "bp_params": [ 7.566, 0.526, -1.157, 13.223, 39.579, 9.829 ], "frame": { "rmsd": null, "origin": [ 154.168, 128.698, 202.845 ], "x_axis": [ 0.563, 0.211, 0.799 ], "y_axis": [ 0.731, -0.578, -0.362 ], "z_axis": [ 0.386, 0.788, -0.479 ], "quaternion": [ -0.356, 0.809, 0.291, 0.366 ] } }, { "index": 1142, "nt1": "///A/2818", "nt2": "///A/2918", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.036, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 57.039, "chi2": -64.388, "conf2": "--", "pucker2": "~C3'-endo", "lambda2": 54.355, "C1C1_dist": 10.355, "N1N9_dist": 8.695, "C6C8_dist": 9.703, "CNNC_torsion": -4.497, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.68],N3-N1(imino)[2.87],N4(amino)-O6(carbonyl)[2.93]", "interBase_angle": 8.686, "planarity": 0.306, "simple_Shear": 0.255, "simple_Stretch": -0.341, "simple_Buckle": 6.761, "simple_Propeller": 5.453, "bp_simpleParams": [ 0.255, -0.341, 0.966, 6.761, 5.453, 4.249 ], "bp_params": [ 0.247, -0.346, 0.966, 6.880, 5.303, 4.245 ], "frame": { "rmsd": null, "origin": [ 141.387, 112.260, 215.517 ], "x_axis": [ 0.405, -0.867, -0.289 ], "y_axis": [ 0.262, -0.193, 0.946 ], "z_axis": [ -0.876, -0.459, 0.149 ], "quaternion": [ 0.583, 0.602, -0.251, -0.484 ] } }, { "index": 1143, "nt1": "///A/2820", "nt2": "///A/2831", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 170.490, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 42.968, "chi2": -151.509, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.390, "C1C1_dist": 11.021, "N1N9_dist": 9.002, "C6C8_dist": 9.745, "CNNC_torsion": -13.198, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.91],O4(carbonyl)-N6(amino)[2.81]", "interBase_angle": 2.448, "planarity": 0.176, "simple_Shear": -0.274, "simple_Stretch": -0.186, "simple_Buckle": -0.797, "simple_Propeller": -2.315, "bp_simpleParams": [ -0.274, -0.186, 0.799, -0.797, -2.315, -8.054 ], "bp_params": [ -0.268, -0.194, 0.799, -0.723, -2.339, -8.055 ], "frame": { "rmsd": null, "origin": [ 133.095, 124.283, 221.054 ], "x_axis": [ 0.351, 0.040, -0.936 ], "y_axis": [ 0.137, -0.991, 0.009 ], "z_axis": [ -0.926, -0.131, -0.353 ], "quaternion": [ 0.043, 0.821, 0.054, -0.567 ] } }, { "index": 1144, "nt1": "///A/2821", "nt2": "///A/2830", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.196, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.861, "chi2": 172.848, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.704, "C1C1_dist": 10.594, "N1N9_dist": 8.716, "C6C8_dist": 9.537, "CNNC_torsion": -16.553, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.77],O4(carbonyl)-N6(amino)[2.78]", "interBase_angle": 5.929, "planarity": 0.266, "simple_Shear": -0.171, "simple_Stretch": -0.444, "simple_Buckle": 1.704, "simple_Propeller": -5.679, "bp_simpleParams": [ -0.171, -0.444, 1.078, 1.704, -5.679, -5.765 ], "bp_params": [ -0.161, -0.447, 1.078, 1.827, -5.640, -5.771 ], "frame": { "rmsd": null, "origin": [ 130.334, 125.507, 219.193 ], "x_axis": [ 0.442, -0.625, -0.643 ], "y_axis": [ -0.083, -0.742, 0.665 ], "z_axis": [ -0.893, -0.241, -0.380 ], "quaternion": [ 0.283, 0.801, -0.221, -0.480 ] } }, { "index": 1145, "nt1": "///A/2822", "nt2": "///A/2829", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 177.141, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.840, "chi2": -173.987, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.886, "C1C1_dist": 10.893, "N1N9_dist": 8.952, "C6C8_dist": 9.786, "CNNC_torsion": -14.139, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.81],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.83]", "interBase_angle": 8.888, "planarity": 0.164, "simple_Shear": 0.130, "simple_Stretch": -0.230, "simple_Buckle": 3.188, "simple_Propeller": -8.297, "bp_simpleParams": [ 0.130, -0.230, 0.476, 3.188, -8.297, -3.861 ], "bp_params": [ 0.128, -0.231, 0.476, 3.122, -8.322, -3.869 ], "frame": { "rmsd": null, "origin": [ 128.321, 125.841, 215.992 ], "x_axis": [ 0.281, -0.932, -0.228 ], "y_axis": [ -0.345, -0.320, 0.883 ], "z_axis": [ -0.896, -0.170, -0.411 ], "quaternion": [ 0.371, 0.709, -0.450, -0.396 ] } }, { "index": 1146, "nt1": "///A/2823", "nt2": "///A/2828", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.733, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.249, "chi2": -176.977, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.689, "C1C1_dist": 10.797, "N1N9_dist": 8.921, "C6C8_dist": 9.799, "CNNC_torsion": 3.125, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.77],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.84]", "interBase_angle": 5.480, "planarity": 0.079, "simple_Shear": 0.153, "simple_Stretch": -0.203, "simple_Buckle": 4.036, "simple_Propeller": 3.706, "bp_simpleParams": [ 0.153, -0.203, -0.016, 4.036, 3.706, -1.900 ], "bp_params": [ 0.151, -0.205, -0.016, 4.078, 3.660, -1.900 ], "frame": { "rmsd": null, "origin": [ 126.428, 125.182, 212.530 ], "x_axis": [ 0.006, -0.989, 0.148 ], "y_axis": [ -0.437, 0.130, 0.890 ], "z_axis": [ -0.899, -0.070, -0.432 ], "quaternion": [ -0.420, -0.572, 0.624, 0.329 ] } }, { "index": 1147, "nt1": "///A/2824", "nt2": "///A/2827", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -179.330, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 96.847, "chi2": -162.930, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 4.840, "C1C1_dist": 9.645, "N1N9_dist": 8.461, "C6C8_dist": 8.834, "CNNC_torsion": -149.020, "hbonds_num": 4, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[2.78],N2(amino)-OP2[3.31],N2(amino)-N7[2.74],N3-N6(amino)[3.03]", "interBase_angle": 7.544, "planarity": 0.116, "simple_Shear": 7.521, "simple_Stretch": 2.562, "simple_Buckle": 6.203, "simple_Propeller": 4.295, "bp_simpleParams": [ 7.521, 2.562, -0.041, 6.203, 4.295, -7.942 ], "bp_params": [ 6.788, -4.130, -0.041, 7.272, -2.009, -7.927 ], "frame": { "rmsd": null, "origin": [ 124.272, 125.250, 209.858 ], "x_axis": [ -0.325, -0.463, 0.824 ], "y_axis": [ -0.247, 0.883, 0.399 ], "z_axis": [ -0.913, -0.074, -0.402 ], "quaternion": [ 0.538, 0.220, -0.808, -0.100 ] } }, { "index": 1148, "nt1": "///A/2832", "nt2": "///A/2917", "bp": "G-G", "name": "--", "Saenger": "--", "LW": ".WH", "DSSR": ".W-M", "intra_chain": true, "chi1": 176.931, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 26.750, "chi2": -133.206, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 18.311, "C1C1_dist": 13.118, "N1N9_dist": 10.430, "C6C8_dist": 9.467, "CNNC_torsion": 72.215, "hbonds_num": 1, "hbonds_desc": "N1(imino)-O6(carbonyl)[2.70]", "interBase_angle": 27.361, "planarity": 0.399, "simple_Shear": 1.982, "simple_Stretch": 2.270, "simple_Buckle": -27.134, "simple_Propeller": -3.515, "bp_simpleParams": [ 1.982, 2.270, -0.844, -27.134, -3.515, -80.281 ], "bp_params": [ 2.513, 1.663, -0.844, -27.086, 3.871, -78.725 ], "frame": { "rmsd": null, "origin": [ 136.628, 121.352, 222.811 ], "x_axis": [ 0.120, 0.832, -0.541 ], "y_axis": [ -0.084, 0.552, 0.830 ], "z_axis": [ 0.989, -0.054, 0.137 ], "quaternion": [ 0.672, 0.329, 0.569, 0.341 ] } }, { "index": 1149, "nt1": "///A/2833", "nt2": "///A/2916", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -165.037, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 44.451, "chi2": -135.038, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 13.142, "C1C1_dist": 9.515, "N1N9_dist": 7.159, "C6C8_dist": 6.502, "CNNC_torsion": -168.109, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.68],N3(imino)-N7[3.06]", "interBase_angle": 4.339, "planarity": 0.091, "simple_Shear": 5.326, "simple_Stretch": 1.236, "simple_Buckle": 4.003, "simple_Propeller": 1.674, "bp_simpleParams": [ 5.326, 1.236, 0.285, 4.003, 1.674, -82.600 ], "bp_params": [ 4.591, -2.969, 0.285, 3.986, -1.715, -82.572 ], "frame": { "rmsd": null, "origin": [ 140.012, 119.983, 221.778 ], "x_axis": [ -0.144, 0.979, 0.144 ], "y_axis": [ -0.264, -0.178, 0.948 ], "z_axis": [ 0.954, 0.098, 0.284 ], "quaternion": [ 0.491, 0.433, 0.413, 0.634 ] } }, { "index": 1150, "nt1": "///A/2835", "nt2": "///A/2915", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -170.320, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 11.521, "chi2": -168.107, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 95.950, "C1C1_dist": 9.854, "N1N9_dist": 8.649, "C6C8_dist": 9.149, "CNNC_torsion": 43.530, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.86],N6(amino)-O2'(hydroxyl)[3.07],N6(amino)-N3[2.82]", "interBase_angle": 3.569, "planarity": 0.144, "simple_Shear": -7.138, "simple_Stretch": 2.360, "simple_Buckle": -1.766, "simple_Propeller": -3.102, "bp_simpleParams": [ -7.138, 2.360, -0.649, -1.766, -3.102, -2.723 ], "bp_params": [ -6.622, -3.558, -0.649, 1.038, -3.415, -2.725 ], "frame": { "rmsd": null, "origin": [ 145.119, 123.481, 223.903 ], "x_axis": [ -0.611, 0.726, 0.314 ], "y_axis": [ -0.184, -0.517, 0.836 ], "z_axis": [ 0.770, 0.453, 0.450 ], "quaternion": [ 0.284, 0.338, 0.401, 0.803 ] } }, { "index": 1151, "nt1": "///A/2836", "nt2": "///A/2914", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.195, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.721, "chi2": -165.725, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.745, "C1C1_dist": 10.570, "N1N9_dist": 8.928, "C6C8_dist": 9.902, "CNNC_torsion": -7.329, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.97],N1(imino)-N3[2.90],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 6.003, "planarity": 0.109, "simple_Shear": -0.177, "simple_Stretch": -0.121, "simple_Buckle": -3.754, "simple_Propeller": -4.685, "bp_simpleParams": [ -0.177, -0.121, 0.282, -3.754, -4.685, 1.611 ], "bp_params": [ -0.175, -0.123, 0.282, -3.693, -4.733, 1.612 ], "frame": { "rmsd": null, "origin": [ 147.507, 126.322, 225.986 ], "x_axis": [ -0.512, -0.024, 0.859 ], "y_axis": [ 0.391, -0.897, 0.207 ], "z_axis": [ 0.765, 0.442, 0.469 ], "quaternion": [ -0.122, 0.479, 0.191, 0.848 ] } }, { "index": 1152, "nt1": "///A/2837", "nt2": "///A/2913", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -168.590, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.626, "chi2": -164.423, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.343, "C1C1_dist": 10.520, "N1N9_dist": 8.869, "C6C8_dist": 9.849, "CNNC_torsion": -2.180, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.98],N1-N3(imino)[2.84]", "interBase_angle": 4.965, "planarity": 0.059, "simple_Shear": 0.026, "simple_Stretch": -0.090, "simple_Buckle": -4.087, "simple_Propeller": -2.819, "bp_simpleParams": [ 0.026, -0.090, -0.021, -4.087, -2.819, 1.236 ], "bp_params": [ 0.025, -0.090, -0.021, -4.109, -2.787, 1.235 ], "frame": { "rmsd": null, "origin": [ 149.035, 129.367, 227.750 ], "x_axis": [ -0.233, -0.461, 0.856 ], "y_axis": [ 0.614, -0.753, -0.239 ], "z_axis": [ 0.755, 0.470, 0.458 ], "quaternion": [ -0.344, 0.515, 0.074, 0.782 ] } }, { "index": 1153, "nt1": "///A/2838", "nt2": "///A/2912", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.992, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.267, "chi2": -173.380, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.235, "C1C1_dist": 10.479, "N1N9_dist": 8.817, "C6C8_dist": 9.821, "CNNC_torsion": -5.816, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.82],O4(carbonyl)-N6(amino)[3.02]", "interBase_angle": 8.920, "planarity": 0.103, "simple_Shear": 0.003, "simple_Stretch": -0.095, "simple_Buckle": -8.157, "simple_Propeller": -3.609, "bp_simpleParams": [ 0.003, -0.095, 0.237, -8.157, -3.609, 2.788 ], "bp_params": [ 0.004, -0.095, 0.237, -8.145, -3.635, 2.782 ], "frame": { "rmsd": null, "origin": [ 150.646, 131.775, 230.547 ], "x_axis": [ 0.133, -0.788, 0.601 ], "y_axis": [ 0.611, -0.412, -0.676 ], "z_axis": [ 0.780, 0.457, 0.427 ], "quaternion": [ 0.536, -0.529, 0.084, -0.653 ] } }, { "index": 1154, "nt1": "///A/2839", "nt2": "///A/2911", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 179.527, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.355, "chi2": -174.578, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.525, "C1C1_dist": 10.222, "N1N9_dist": 8.517, "C6C8_dist": 9.405, "CNNC_torsion": -11.144, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.64],N3-N1(imino)[2.76],N4(amino)-O6(carbonyl)[2.71]", "interBase_angle": 17.376, "planarity": 0.297, "simple_Shear": 0.425, "simple_Stretch": -0.628, "simple_Buckle": -16.713, "simple_Propeller": 4.755, "bp_simpleParams": [ 0.425, -0.628, 1.532, -16.713, 4.755, 0.529 ], "bp_params": [ 0.403, -0.642, 1.532, -16.547, 5.304, 0.524 ], "frame": { "rmsd": null, "origin": [ 152.368, 134.024, 233.231 ], "x_axis": [ 0.454, -0.884, 0.110 ], "y_axis": [ 0.324, 0.048, -0.945 ], "z_axis": [ 0.830, 0.464, 0.308 ], "quaternion": [ 0.673, -0.524, 0.268, -0.449 ] } }, { "index": 1155, "nt1": "///A/2840", "nt2": "///A/2856", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.830, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.649, "chi2": -175.807, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.617, "C1C1_dist": 10.850, "N1N9_dist": 8.963, "C6C8_dist": 9.828, "CNNC_torsion": -13.795, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.82],N3-N1(imino)[2.91],N4(amino)-O6(carbonyl)[2.92]", "interBase_angle": 8.908, "planarity": 0.174, "simple_Shear": 0.173, "simple_Stretch": -0.194, "simple_Buckle": 2.803, "simple_Propeller": -8.456, "bp_simpleParams": [ 0.173, -0.194, 0.558, 2.803, -8.456, -2.695 ], "bp_params": [ 0.170, -0.196, 0.558, 2.700, -8.489, -2.702 ], "frame": { "rmsd": null, "origin": [ 158.215, 132.386, 233.542 ], "x_axis": [ -0.014, -0.516, -0.856 ], "y_axis": [ -0.435, 0.774, -0.460 ], "z_axis": [ 0.900, 0.366, -0.236 ], "quaternion": [ 0.617, -0.334, 0.711, -0.033 ] } }, { "index": 1156, "nt1": "///A/2841", "nt2": "///A/2855", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.783, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.378, "chi2": -171.400, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.752, "C1C1_dist": 10.557, "N1N9_dist": 8.848, "C6C8_dist": 9.813, "CNNC_torsion": -5.344, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.90],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 7.813, "planarity": 0.204, "simple_Shear": 0.234, "simple_Stretch": -0.192, "simple_Buckle": 7.813, "simple_Propeller": -0.105, "bp_simpleParams": [ 0.234, -0.192, 0.537, 7.813, -0.105, 1.604 ], "bp_params": [ 0.231, -0.197, 0.537, 7.809, -0.250, 1.601 ], "frame": { "rmsd": null, "origin": [ 162.068, 132.000, 233.530 ], "x_axis": [ -0.120, 0.002, -0.993 ], "y_axis": [ -0.500, 0.864, 0.062 ], "z_axis": [ 0.858, 0.503, -0.103 ], "quaternion": [ 0.641, -0.172, 0.722, 0.196 ] } }, { "index": 1157, "nt1": "///A/2842", "nt2": "///A/2854", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.296, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.717, "chi2": -154.732, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.118, "C1C1_dist": 10.773, "N1N9_dist": 8.977, "C6C8_dist": 9.844, "CNNC_torsion": -10.787, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.96],O4(carbonyl)-N6(amino)[2.93]", "interBase_angle": 17.580, "planarity": 0.246, "simple_Shear": -0.164, "simple_Stretch": -0.049, "simple_Buckle": -11.278, "simple_Propeller": -13.486, "bp_simpleParams": [ -0.164, -0.049, -0.299, -11.278, -13.486, -2.584 ], "bp_params": [ -0.164, -0.051, -0.299, -11.064, -13.662, -2.591 ], "frame": { "rmsd": null, "origin": [ 166.447, 131.434, 232.938 ], "x_axis": [ -0.748, 0.178, -0.640 ], "y_axis": [ -0.247, 0.819, 0.518 ], "z_axis": [ 0.616, 0.545, -0.568 ], "quaternion": [ 0.355, -0.019, 0.885, 0.300 ] } }, { "index": 1158, "nt1": "///A/2843", "nt2": "///A/2853", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 179.832, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.661, "chi2": -170.890, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.682, "C1C1_dist": 10.663, "N1N9_dist": 8.876, "C6C8_dist": 9.798, "CNNC_torsion": -8.390, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.75]", "interBase_angle": 0.778, "planarity": 0.166, "simple_Shear": -0.183, "simple_Stretch": -0.240, "simple_Buckle": -0.618, "simple_Propeller": 0.473, "bp_simpleParams": [ -0.183, -0.240, 0.702, -0.618, 0.473, 0.089 ], "bp_params": [ -0.180, -0.242, 0.702, -0.624, 0.465, 0.089 ], "frame": { "rmsd": null, "origin": [ 168.156, 131.917, 229.360 ], "x_axis": [ -0.767, 0.515, -0.382 ], "y_axis": [ 0.010, 0.605, 0.796 ], "z_axis": [ 0.642, 0.607, -0.469 ], "quaternion": [ 0.304, 0.156, 0.843, 0.416 ] } }, { "index": 1159, "nt1": "///A/2844", "nt2": "///A/2852", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -138.594, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 52.159, "chi2": -168.986, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.026, "C1C1_dist": 10.738, "N1N9_dist": 8.935, "C6C8_dist": 9.801, "CNNC_torsion": -8.576, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.93],N1-N3(imino)[2.91]", "interBase_angle": 1.942, "planarity": 0.152, "simple_Shear": 0.060, "simple_Stretch": -0.158, "simple_Buckle": 1.554, "simple_Propeller": -1.164, "bp_simpleParams": [ 0.060, -0.158, 0.744, 1.554, -1.164, -3.388 ], "bp_params": [ 0.058, -0.159, 0.744, 1.542, -1.180, -3.388 ], "frame": { "rmsd": null, "origin": [ 170.104, 132.850, 226.360 ], "x_axis": [ -0.633, 0.761, 0.145 ], "y_axis": [ 0.467, 0.225, 0.855 ], "z_axis": [ 0.618, 0.608, -0.498 ], "quaternion": [ 0.154, 0.400, 0.767, 0.477 ] } }, { "index": 1160, "nt1": "///A/2846", "nt2": "///A/2851", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -167.344, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 122.399, "chi2": 170.930, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 38.125, "C1C1_dist": 9.252, "N1N9_dist": 8.890, "C6C8_dist": 10.305, "CNNC_torsion": -8.053, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.05],N3-N6(amino)[2.93]", "interBase_angle": 7.547, "planarity": 0.115, "simple_Shear": 5.307, "simple_Stretch": 3.311, "simple_Buckle": -1.403, "simple_Propeller": -7.415, "bp_simpleParams": [ 5.307, 3.311, 0.558, -1.403, -7.415, 52.593 ], "bp_params": [ 6.228, -0.581, 0.558, -5.607, -5.052, 52.583 ], "frame": { "rmsd": null, "origin": [ 172.222, 135.318, 225.028 ], "x_axis": [ 0.391, 0.406, 0.826 ], "y_axis": [ 0.707, -0.708, 0.013 ], "z_axis": [ 0.590, 0.578, -0.563 ], "quaternion": [ -0.173, 0.816, 0.341, 0.434 ] } }, { "index": 1161, "nt1": "///A/2855", "nt2": "///A/2908", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -171.400, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 84.276, "chi2": -158.495, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 67.221, "C1C1_dist": 8.497, "N1N9_dist": 8.264, "C6C8_dist": 10.594, "CNNC_torsion": 162.463, "hbonds_num": 2, "hbonds_desc": "N2(amino)-O2'(hydroxyl)[3.36],N2(amino)-N3[3.51]", "interBase_angle": 25.341, "planarity": 0.366, "simple_Shear": 7.368, "simple_Stretch": 4.068, "simple_Buckle": 19.450, "simple_Propeller": -16.244, "bp_simpleParams": [ 7.368, 4.068, 1.802, 19.450, -16.244, -166.265 ], "bp_params": [ -2.909, -7.898, 1.802, -25.337, -0.484, -165.926 ], "frame": { "rmsd": null, "origin": [ 163.338, 130.399, 237.387 ], "x_axis": [ 0.544, -0.820, -0.176 ], "y_axis": [ -0.003, -0.212, 0.977 ], "z_axis": [ -0.839, -0.531, -0.117 ], "quaternion": [ 0.551, 0.684, -0.301, -0.371 ] } }, { "index": 1162, "nt1": "///A/2859", "nt2": "///A/2908", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -47.893, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 86.987, "chi2": -158.495, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 12.870, "C1C1_dist": 10.412, "N1N9_dist": 8.979, "C6C8_dist": 9.386, "CNNC_torsion": 59.890, "hbonds_num": 2, "hbonds_desc": "N2(amino)-N7[2.73],N3-N6(amino)[2.87]", "interBase_angle": 9.993, "planarity": 0.233, "simple_Shear": 6.760, "simple_Stretch": 2.286, "simple_Buckle": -3.170, "simple_Propeller": -9.477, "bp_simpleParams": [ 6.760, 2.286, -0.898, -3.170, -9.477, -9.200 ], "bp_params": [ 6.457, -3.038, -0.898, -8.850, -4.640, -9.181 ], "frame": { "rmsd": null, "origin": [ 163.327, 128.835, 244.343 ], "x_axis": [ -0.129, -0.340, 0.932 ], "y_axis": [ 0.490, -0.839, -0.238 ], "z_axis": [ 0.862, 0.426, 0.275 ], "quaternion": [ -0.277, 0.599, 0.063, 0.749 ] } }, { "index": 1163, "nt1": "///A/2860", "nt2": "///A/2905", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "tW.", "DSSR": "tW-.", "intra_chain": true, "chi1": -117.331, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 45.882, "chi2": 173.882, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 15.827, "C1C1_dist": 13.429, "N1N9_dist": 11.052, "C6C8_dist": 10.591, "CNNC_torsion": 121.246, "hbonds_num": 1, "hbonds_desc": "N1-N4(amino)[3.64]", "interBase_angle": 18.135, "planarity": 0.361, "simple_Shear": 4.290, "simple_Stretch": 3.190, "simple_Buckle": -16.744, "simple_Propeller": -6.966, "bp_simpleParams": [ 4.290, 3.190, -1.688, -16.744, -6.966, -62.549 ], "bp_params": [ 5.312, 0.601, -1.688, -17.971, 2.432, -61.934 ], "frame": { "rmsd": null, "origin": [ 170.489, 130.235, 249.093 ], "x_axis": [ -0.005, -0.954, 0.300 ], "y_axis": [ 0.263, -0.290, -0.920 ], "z_axis": [ 0.965, 0.074, 0.253 ], "quaternion": [ -0.489, 0.508, -0.340, 0.622 ] } }, { "index": 1164, "nt1": "///A/2861", "nt2": "///A/2907", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.807, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.064, "chi2": -152.944, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.971, "C1C1_dist": 10.815, "N1N9_dist": 9.001, "C6C8_dist": 9.850, "CNNC_torsion": 8.230, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.95],O4(carbonyl)-N6(amino)[2.96]", "interBase_angle": 9.427, "planarity": 0.210, "simple_Shear": -0.202, "simple_Stretch": -0.079, "simple_Buckle": -7.855, "simple_Propeller": 5.213, "bp_simpleParams": [ -0.202, -0.079, -0.603, -7.855, 5.213, -4.378 ], "bp_params": [ -0.199, -0.085, -0.603, -7.990, 5.004, -4.372 ], "frame": { "rmsd": null, "origin": [ 166.722, 132.264, 243.336 ], "x_axis": [ -0.115, -0.646, 0.755 ], "y_axis": [ 0.419, -0.721, -0.552 ], "z_axis": [ 0.901, 0.253, 0.354 ], "quaternion": [ -0.360, 0.559, -0.101, 0.740 ] } }, { "index": 1165, "nt1": "///A/2862", "nt2": "///A/2906", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.162, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.363, "chi2": -159.818, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.377, "C1C1_dist": 10.739, "N1N9_dist": 8.981, "C6C8_dist": 9.887, "CNNC_torsion": 4.184, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.95],N1-N3(imino)[2.90]", "interBase_angle": 7.209, "planarity": 0.085, "simple_Shear": 0.152, "simple_Stretch": -0.051, "simple_Buckle": -2.016, "simple_Propeller": 6.921, "bp_simpleParams": [ 0.152, -0.051, -0.011, -2.016, 6.921, -1.920 ], "bp_params": [ 0.151, -0.054, -0.011, -1.882, 6.959, -1.924 ], "frame": { "rmsd": null, "origin": [ 169.044, 133.444, 245.834 ], "x_axis": [ -0.002, -0.936, 0.353 ], "y_axis": [ 0.389, -0.326, -0.862 ], "z_axis": [ 0.921, 0.135, 0.364 ], "quaternion": [ 0.509, -0.490, 0.279, -0.651 ] } }, { "index": 1166, "nt1": "///A/2863", "nt2": "///A/2905", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.671, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.070, "chi2": 173.882, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 49.278, "C1C1_dist": 10.803, "N1N9_dist": 8.952, "C6C8_dist": 9.854, "CNNC_torsion": 4.343, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 7.319, "planarity": 0.094, "simple_Shear": -0.126, "simple_Stretch": -0.152, "simple_Buckle": -0.621, "simple_Propeller": 7.292, "bp_simpleParams": [ -0.126, -0.152, 0.036, -0.621, 7.292, -0.419 ], "bp_params": [ -0.125, -0.153, 0.036, -0.682, 7.287, -0.420 ], "frame": { "rmsd": null, "origin": [ 171.217, 132.962, 248.875 ], "x_axis": [ 0.165, -0.965, -0.205 ], "y_axis": [ 0.340, 0.251, -0.906 ], "z_axis": [ 0.926, 0.079, 0.369 ], "quaternion": [ 0.668, -0.369, 0.423, -0.488 ] } }, { "index": 1167, "nt1": "///A/2864", "nt2": "///A/2903", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 179.140, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 33.435, "chi2": -164.071, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 72.065, "C1C1_dist": 10.405, "N1N9_dist": 8.744, "C6C8_dist": 9.538, "CNNC_torsion": -5.601, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)*O2(carbonyl)[2.59],O6(carbonyl)-N3(imino)[2.82],N1(imino)-O2(carbonyl)[2.86]", "unusual_base2base_hbonds": 1, "interBase_angle": 2.166, "planarity": 0.085, "simple_Shear": -3.658, "simple_Stretch": 0.228, "simple_Buckle": 1.958, "simple_Propeller": -0.927, "bp_simpleParams": [ -3.658, 0.228, 0.494, 1.958, -0.927, -3.810 ], "bp_params": [ -3.491, -1.113, 0.494, 2.160, -0.154, -3.809 ], "frame": { "rmsd": null, "origin": [ 174.277, 129.883, 249.060 ], "x_axis": [ 0.210, -0.565, -0.798 ], "y_axis": [ 0.098, 0.824, -0.558 ], "z_axis": [ 0.973, 0.039, 0.228 ], "quaternion": [ 0.752, -0.198, 0.589, -0.220 ] } }, { "index": 1168, "nt1": "///A/2865", "nt2": "///A/2902", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.325, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.816, "chi2": 175.187, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.236, "C1C1_dist": 10.778, "N1N9_dist": 8.926, "C6C8_dist": 9.782, "CNNC_torsion": -11.960, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.90],O4(carbonyl)-N6(amino)[2.92]", "interBase_angle": 2.643, "planarity": 0.174, "simple_Shear": -0.163, "simple_Stretch": -0.167, "simple_Buckle": 1.349, "simple_Propeller": -2.273, "bp_simpleParams": [ -0.163, -0.167, 0.735, 1.349, -2.273, -3.460 ], "bp_params": [ -0.159, -0.171, 0.735, 1.396, -2.244, -3.461 ], "frame": { "rmsd": null, "origin": [ 177.396, 128.866, 249.943 ], "x_axis": [ 0.130, 0.311, -0.941 ], "y_axis": [ -0.153, 0.944, 0.291 ], "z_axis": [ 0.980, 0.107, 0.170 ], "quaternion": [ 0.749, 0.062, 0.641, 0.155 ] } }, { "index": 1169, "nt1": "///A/2866", "nt2": "///A/2901", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -175.590, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.592, "chi2": -163.134, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.485, "C1C1_dist": 10.720, "N1N9_dist": 8.946, "C6C8_dist": 9.868, "CNNC_torsion": -4.078, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.80],N3-N1(imino)[2.93],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 3.130, "planarity": 0.137, "simple_Shear": 0.187, "simple_Stretch": -0.156, "simple_Buckle": 2.653, "simple_Propeller": 1.661, "bp_simpleParams": [ 0.187, -0.156, 0.477, 2.653, 1.661, -0.118 ], "bp_params": [ 0.185, -0.159, 0.477, 2.676, 1.623, -0.118 ], "frame": { "rmsd": null, "origin": [ 180.605, 128.002, 249.509 ], "x_axis": [ -0.027, 0.797, -0.604 ], "y_axis": [ -0.147, 0.594, 0.791 ], "z_axis": [ 0.989, 0.110, 0.101 ], "quaternion": [ 0.646, 0.264, 0.616, 0.365 ] } }, { "index": 1170, "nt1": "///A/2867", "nt2": "///A/2900", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.159, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.390, "chi2": -175.881, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.078, "C1C1_dist": 10.528, "N1N9_dist": 8.827, "C6C8_dist": 9.790, "CNNC_torsion": -4.386, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.84],O4(carbonyl)-N6(amino)[2.97]", "interBase_angle": 4.104, "planarity": 0.127, "simple_Shear": 0.071, "simple_Stretch": -0.156, "simple_Buckle": 3.866, "simple_Propeller": 1.377, "bp_simpleParams": [ 0.071, -0.156, 0.434, 3.866, 1.377, 0.824 ], "bp_params": [ 0.071, -0.156, 0.434, 3.869, 1.369, 0.824 ], "frame": { "rmsd": null, "origin": [ 183.870, 128.029, 247.879 ], "x_axis": [ -0.147, 0.987, -0.072 ], "y_axis": [ -0.086, 0.060, 0.994 ], "z_axis": [ 0.985, 0.152, 0.077 ], "quaternion": [ 0.497, 0.424, 0.531, 0.539 ] } }, { "index": 1171, "nt1": "///A/2868", "nt2": "///A/2899", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -170.351, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.907, "chi2": -163.843, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.437, "C1C1_dist": 10.584, "N1N9_dist": 8.881, "C6C8_dist": 9.830, "CNNC_torsion": 4.917, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.94],N1(imino)-N3[2.91],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 3.855, "planarity": 0.167, "simple_Shear": -0.228, "simple_Stretch": -0.221, "simple_Buckle": -2.964, "simple_Propeller": -2.465, "bp_simpleParams": [ -0.228, -0.221, -0.808, -2.964, -2.465, 1.004 ], "bp_params": [ -0.224, -0.225, -0.808, -2.920, -2.517, 1.004 ], "frame": { "rmsd": null, "origin": [ 186.920, 129.971, 245.601 ], "x_axis": [ -0.274, 0.870, 0.410 ], "y_axis": [ 0.253, -0.346, 0.904 ], "z_axis": [ 0.928, 0.351, -0.125 ], "quaternion": [ 0.252, 0.547, 0.513, 0.611 ] } }, { "index": 1172, "nt1": "///A/2870", "nt2": "///A/2896", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.553, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 41.645, "chi2": -168.315, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 60.770, "C1C1_dist": 10.676, "N1N9_dist": 8.861, "C6C8_dist": 9.650, "CNNC_torsion": 4.120, "hbonds_num": 2, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.93],N1(imino)-O2(carbonyl)[3.07]", "interBase_angle": 13.254, "planarity": 0.210, "simple_Shear": -1.764, "simple_Stretch": -0.203, "simple_Buckle": -12.736, "simple_Propeller": -3.668, "bp_simpleParams": [ -1.764, -0.203, -1.172, -12.736, -3.668, -5.503 ], "bp_params": [ -1.703, -0.501, -1.172, -11.927, -5.779, -5.480 ], "frame": { "rmsd": null, "origin": [ 192.955, 134.001, 247.405 ], "x_axis": [ -0.247, -0.400, 0.883 ], "y_axis": [ 0.411, -0.868, -0.279 ], "z_axis": [ 0.878, 0.294, 0.378 ], "quaternion": [ -0.257, 0.557, 0.005, 0.789 ] } }, { "index": 1173, "nt1": "///A/2871", "nt2": "///A/2895", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -154.715, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.569, "chi2": -150.755, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.032, "C1C1_dist": 10.724, "N1N9_dist": 8.919, "C6C8_dist": 9.793, "CNNC_torsion": 7.227, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.92],N2(amino)-O2(carbonyl)[2.83]", "interBase_angle": 9.276, "planarity": 0.185, "simple_Shear": -0.130, "simple_Stretch": -0.241, "simple_Buckle": -9.263, "simple_Propeller": 0.491, "bp_simpleParams": [ -0.130, -0.241, -1.010, -9.263, 0.491, -1.691 ], "bp_params": [ -0.128, -0.242, -1.010, -9.266, 0.413, -1.686 ], "frame": { "rmsd": null, "origin": [ 195.741, 136.395, 249.134 ], "x_axis": [ 0.023, -0.839, 0.543 ], "y_axis": [ 0.440, -0.480, -0.759 ], "z_axis": [ 0.898, 0.257, 0.358 ], "quaternion": [ -0.475, 0.535, -0.187, 0.673 ] } }, { "index": 1174, "nt1": "///A/2872", "nt2": "///A/2894", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -156.289, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 61.954, "chi2": -168.390, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 40.228, "C1C1_dist": 10.960, "N1N9_dist": 9.144, "C6C8_dist": 9.920, "CNNC_torsion": -3.216, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[3.17],N3(imino)-O6(carbonyl)[3.02]", "interBase_angle": 5.315, "planarity": 0.100, "simple_Shear": 2.186, "simple_Stretch": 0.180, "simple_Buckle": 1.917, "simple_Propeller": 4.958, "bp_simpleParams": [ 2.186, 0.180, 0.232, 1.917, 4.958, -6.167 ], "bp_params": [ 2.173, -0.296, 0.232, 2.941, 4.428, -6.169 ], "frame": { "rmsd": null, "origin": [ 198.403, 137.104, 251.137 ], "x_axis": [ 0.229, -0.971, -0.067 ], "y_axis": [ 0.286, 0.133, -0.949 ], "z_axis": [ 0.930, 0.198, 0.308 ], "quaternion": [ 0.646, -0.444, 0.386, -0.486 ] } }, { "index": 1175, "nt1": "///A/2873", "nt2": "///A/2893", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": 174.057, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 95.550, "chi2": 175.800, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 7.648, "C1C1_dist": 9.632, "N1N9_dist": 8.423, "C6C8_dist": 8.840, "CNNC_torsion": -119.514, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[2.44],N2(amino)-N7[2.91],N3-N6(amino)[3.09]", "interBase_angle": 13.291, "planarity": 0.201, "simple_Shear": 7.544, "simple_Stretch": 2.659, "simple_Buckle": 9.189, "simple_Propeller": 9.602, "bp_simpleParams": [ 7.544, 2.659, 0.124, 9.189, 9.602, -4.842 ], "bp_params": [ 6.839, -4.149, 0.124, 13.251, -1.018, -4.810 ], "frame": { "rmsd": null, "origin": [ 201.378, 135.882, 252.292 ], "x_axis": [ 0.333, -0.593, -0.733 ], "y_axis": [ 0.066, 0.791, -0.609 ], "z_axis": [ 0.941, 0.154, 0.303 ], "quaternion": [ 0.779, -0.245, 0.537, -0.211 ] } }, { "index": 1176, "nt1": "///A/2874", "nt2": "///A/2891", "bp": "G+G", "name": "--", "Saenger": "04-IV", "LW": "tSS", "DSSR": "tm+m", "intra_chain": true, "chi1": -151.058, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 79.885, "chi2": -136.327, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 81.337, "C1C1_dist": 7.861, "N1N9_dist": 7.917, "C6C8_dist": 10.438, "CNNC_torsion": 164.590, "hbonds_num": 6, "hbonds_desc": "O3'-N2(amino)[3.27],O2'(hydroxyl)-N2(amino)[2.47],N2(amino)-O3'[3.35],N2(amino)-O2'(hydroxyl)[3.05],N2(amino)-N3[3.08],N3-N2(amino)[3.18]", "interBase_angle": 15.061, "planarity": 0.209, "simple_Shear": 7.774, "simple_Stretch": 4.364, "simple_Buckle": 1.379, "simple_Propeller": -14.998, "bp_simpleParams": [ 7.774, 4.364, -0.078, 1.379, -14.998, 177.893 ], "bp_params": [ 3.506, 8.197, -0.078, 10.225, -11.058, 177.894 ], "frame": { "rmsd": null, "origin": [ 203.803, 136.956, 259.508 ], "x_axis": [ -0.110, -0.840, 0.531 ], "y_axis": [ 0.452, -0.518, -0.726 ], "z_axis": [ 0.885, 0.160, 0.436 ], "quaternion": [ -0.450, 0.493, -0.197, 0.718 ] } }, { "index": 1177, "nt1": "///A/2875", "nt2": "///A/2893", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": 170.795, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 45.715, "chi2": 175.800, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 85.914, "C1C1_dist": 6.707, "N1N9_dist": 6.115, "C6C8_dist": 6.298, "CNNC_torsion": 172.643, "hbonds_num": 1, "hbonds_desc": "N7-O2'(hydroxyl)[2.58]", "interBase_angle": 30.782, "planarity": 0.421, "simple_Shear": -8.003, "simple_Stretch": 7.023, "simple_Buckle": -28.415, "simple_Propeller": -11.838, "bp_simpleParams": [ -8.003, 7.023, 0.568, -28.415, -11.838, -65.754 ], "bp_params": [ -5.850, -8.897, 0.568, 15.489, -26.601, -66.710 ], "frame": { "rmsd": null, "origin": [ 197.954, 140.319, 258.234 ], "x_axis": [ 0.507, -0.831, -0.228 ], "y_axis": [ 0.250, 0.396, -0.884 ], "z_axis": [ 0.825, 0.391, 0.409 ], "quaternion": [ 0.760, -0.419, 0.346, -0.356 ] } }, { "index": 1178, "nt1": "///A/2876", "nt2": "///A/2891", "bp": "A+G", "name": "--", "Saenger": "--", "LW": ".HH", "DSSR": ".M+M", "intra_chain": true, "chi1": -175.967, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 17.557, "chi2": -136.327, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 24.039, "C1C1_dist": 12.731, "N1N9_dist": 9.994, "C6C8_dist": 8.692, "CNNC_torsion": -22.351, "hbonds_num": 1, "hbonds_desc": "N6(amino)-O6(carbonyl)[3.21]", "interBase_angle": 31.261, "planarity": 0.468, "simple_Shear": -6.330, "simple_Stretch": 1.452, "simple_Buckle": -29.042, "simple_Propeller": -11.567, "bp_simpleParams": [ -6.330, 1.452, -1.424, -29.042, -11.567, 158.361 ], "bp_params": [ 2.988, -5.766, -1.424, 27.516, -14.837, 157.909 ], "frame": { "rmsd": null, "origin": [ 199.810, 141.085, 263.843 ], "x_axis": [ -0.145, -0.724, 0.674 ], "y_axis": [ 0.542, -0.628, -0.559 ], "z_axis": [ 0.828, 0.284, 0.483 ], "quaternion": [ -0.421, 0.500, -0.091, 0.751 ] } }, { "index": 1179, "nt1": "///A/2877", "nt2": "///A/2890", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -158.430, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 43.659, "chi2": -136.515, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 62.626, "C1C1_dist": 10.375, "N1N9_dist": 8.635, "C6C8_dist": 9.413, "CNNC_torsion": 5.364, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.94],N1(imino)-O2(carbonyl)[3.05],N2(amino)-O2(carbonyl)[3.34]", "interBase_angle": 23.193, "planarity": 0.313, "simple_Shear": -1.580, "simple_Stretch": -0.420, "simple_Buckle": -22.963, "simple_Propeller": -3.260, "bp_simpleParams": [ -1.580, -0.420, -1.695, -22.963, -3.260, -4.198 ], "bp_params": [ -1.499, -0.653, -1.695, -22.221, -6.645, -4.127 ], "frame": { "rmsd": null, "origin": [ 202.412, 142.079, 266.106 ], "x_axis": [ 0.458, 0.067, -0.886 ], "y_axis": [ -0.279, 0.957, -0.072 ], "z_axis": [ 0.844, 0.280, 0.458 ], "quaternion": [ 0.848, -0.104, 0.510, 0.102 ] } }, { "index": 1180, "nt1": "///A/2878", "nt2": "///A/2889", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.709, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.206, "chi2": -143.231, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.371, "C1C1_dist": 10.551, "N1N9_dist": 8.809, "C6C8_dist": 9.686, "CNNC_torsion": 9.922, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.94],O4(carbonyl)-N6(amino)[2.95]", "interBase_angle": 0.638, "planarity": 0.302, "simple_Shear": -0.264, "simple_Stretch": -0.351, "simple_Buckle": -0.607, "simple_Propeller": -0.197, "bp_simpleParams": [ -0.264, -0.351, -1.391, -0.607, -0.197, -2.918 ], "bp_params": [ -0.253, -0.359, -1.391, -0.601, -0.215, -2.918 ], "frame": { "rmsd": null, "origin": [ 204.937, 142.596, 267.285 ], "x_axis": [ 0.134, 0.542, -0.829 ], "y_axis": [ -0.538, 0.742, 0.399 ], "z_axis": [ 0.832, 0.393, 0.392 ], "quaternion": [ 0.753, 0.002, 0.552, 0.359 ] } }, { "index": 1181, "nt1": "///A/2878", "nt2": "///A/2890", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.709, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.698, "chi2": -136.515, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 76.163, "C1C1_dist": 8.583, "N1N9_dist": 7.576, "C6C8_dist": 9.192, "CNNC_torsion": -5.886, "hbonds_num": 1, "hbonds_desc": "N3(imino)-O2(carbonyl)[3.92]", "interBase_angle": 17.948, "planarity": 0.283, "simple_Shear": -1.011, "simple_Stretch": -0.516, "simple_Buckle": -16.528, "simple_Propeller": 6.995, "bp_simpleParams": [ -1.011, -0.516, 1.297, -16.528, 6.995, 29.496 ], "bp_params": [ -0.949, -0.622, 1.297, -17.198, 5.133, 29.207 ], "frame": { "rmsd": null, "origin": [ 203.909, 142.400, 266.426 ], "x_axis": [ 0.319, 0.332, -0.888 ], "y_axis": [ -0.356, 0.910, 0.212 ], "z_axis": [ 0.879, 0.248, 0.408 ], "quaternion": [ 0.812, -0.011, 0.544, 0.212 ] } }, { "index": 1182, "nt1": "///A/2879", "nt2": "///A/2888", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.196, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.290, "chi2": -158.812, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.560, "C1C1_dist": 10.582, "N1N9_dist": 8.866, "C6C8_dist": 9.806, "CNNC_torsion": 0.764, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.89],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 8.075, "planarity": 0.133, "simple_Shear": -0.195, "simple_Stretch": -0.219, "simple_Buckle": -6.597, "simple_Propeller": -4.657, "bp_simpleParams": [ -0.195, -0.219, -0.662, -6.597, -4.657, 0.441 ], "bp_params": [ -0.192, -0.221, -0.662, -6.533, -4.746, 0.441 ], "frame": { "rmsd": null, "origin": [ 208.471, 144.352, 267.599 ], "x_axis": [ -0.432, 0.642, -0.633 ], "y_axis": [ -0.592, 0.328, 0.737 ], "z_axis": [ 0.680, 0.693, 0.238 ], "quaternion": [ 0.532, 0.020, 0.617, 0.579 ] } }, { "index": 1183, "nt1": "///A/2880", "nt2": "///A/2887", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -162.442, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.798, "chi2": -159.923, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.620, "C1C1_dist": 10.385, "N1N9_dist": 8.747, "C6C8_dist": 9.765, "CNNC_torsion": 1.115, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.81],O4(carbonyl)-N6(amino)[3.00]", "interBase_angle": 3.370, "planarity": 0.124, "simple_Shear": 0.026, "simple_Stretch": -0.186, "simple_Buckle": -0.228, "simple_Propeller": -3.363, "bp_simpleParams": [ 0.026, -0.186, -0.551, -0.228, -3.363, 3.113 ], "bp_params": [ 0.026, -0.186, -0.551, -0.219, -3.363, 3.114 ], "frame": { "rmsd": null, "origin": [ 211.174, 146.344, 267.186 ], "x_axis": [ -0.711, 0.690, -0.137 ], "y_axis": [ -0.282, -0.101, 0.954 ], "z_axis": [ 0.644, 0.717, 0.266 ], "quaternion": [ 0.337, 0.176, 0.580, 0.721 ] } }, { "index": 1184, "nt1": "///A/2881", "nt2": "///A/2886", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -155.340, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.723, "chi2": -167.139, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.922, "C1C1_dist": 10.611, "N1N9_dist": 8.874, "C6C8_dist": 9.798, "CNNC_torsion": 13.452, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 10.807, "planarity": 0.182, "simple_Shear": -0.093, "simple_Stretch": -0.233, "simple_Buckle": -6.561, "simple_Propeller": 8.587, "bp_simpleParams": [ -0.093, -0.233, -0.781, -6.561, 8.587, -1.417 ], "bp_params": [ -0.091, -0.234, -0.781, -6.624, 8.539, -1.418 ], "frame": { "rmsd": null, "origin": [ 213.327, 149.718, 266.673 ], "x_axis": [ -0.898, 0.288, 0.332 ], "y_axis": [ 0.201, -0.402, 0.893 ], "z_axis": [ 0.391, 0.869, 0.303 ], "quaternion": [ 0.027, 0.224, 0.546, 0.807 ] } }, { "index": 1185, "nt1": "///A/2882", "nt2": "///A/2885", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -159.883, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 86.430, "chi2": -146.414, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 24.052, "C1C1_dist": 10.482, "N1N9_dist": 9.263, "C6C8_dist": 9.180, "CNNC_torsion": -153.859, "hbonds_num": 3, "hbonds_desc": "N1(imino)-OP2[3.15],N2(amino)-OP2[2.18],N2(amino)-N7[3.51]", "interBase_angle": 16.344, "planarity": 0.247, "simple_Shear": 8.235, "simple_Stretch": 5.501, "simple_Buckle": 12.203, "simple_Propeller": 10.873, "bp_simpleParams": [ 8.235, 5.501, 0.554, 12.203, 10.873, -45.063 ], "bp_params": [ 8.375, -5.286, 0.554, 14.893, -6.732, -44.791 ], "frame": { "rmsd": null, "origin": [ 216.606, 152.977, 264.375 ], "x_axis": [ -0.400, -0.395, 0.827 ], "y_axis": [ 0.885, -0.401, 0.237 ], "z_axis": [ 0.238, 0.826, 0.510 ], "quaternion": [ -0.421, 0.350, 0.350, 0.760 ] } }, { "index": 1186, "nt1": "///B/3", "nt2": "///B/113", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -135.473, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 48.236, "chi2": -176.828, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 45.996, "C1C1_dist": 11.066, "N1N9_dist": 9.065, "C6C8_dist": 9.807, "CNNC_torsion": 5.832, "hbonds_num": 2, "hbonds_desc": "N3(imino)-N1[2.92],O4(carbonyl)-N6(amino)[2.80]", "interBase_angle": 5.805, "planarity": 0.090, "simple_Shear": -0.029, "simple_Stretch": -0.106, "simple_Buckle": 5.803, "simple_Propeller": 0.168, "bp_simpleParams": [ -0.029, -0.106, -0.442, 5.803, 0.168, -7.828 ], "bp_params": [ -0.028, -0.106, -0.442, 5.801, 0.214, -7.818 ], "frame": { "rmsd": null, "origin": [ 172.107, 161.685, 67.529 ], "x_axis": [ -0.762, -0.647, -0.004 ], "y_axis": [ 0.644, -0.757, -0.114 ], "z_axis": [ 0.071, -0.089, 0.993 ], "quaternion": [ -0.344, 0.018, -0.054, 0.937 ] } }, { "index": 1187, "nt1": "///B/4", "nt2": "///B/112", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.094, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.367, "chi2": -170.704, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.116, "C1C1_dist": 10.686, "N1N9_dist": 8.844, "C6C8_dist": 9.742, "CNNC_torsion": -13.228, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.84],N1(imino)-N3[2.81],N2(amino)-O2(carbonyl)[2.72]", "interBase_angle": 12.637, "planarity": 0.166, "simple_Shear": -0.183, "simple_Stretch": -0.263, "simple_Buckle": -0.611, "simple_Propeller": -12.622, "bp_simpleParams": [ -0.183, -0.263, 0.284, -0.611, -12.622, -1.230 ], "bp_params": [ -0.179, -0.265, 0.284, -0.429, -12.630, -1.237 ], "frame": { "rmsd": null, "origin": [ 172.395, 163.485, 71.055 ], "x_axis": [ -0.394, -0.914, -0.090 ], "y_axis": [ 0.884, -0.351, -0.309 ], "z_axis": [ 0.251, -0.201, 0.947 ], "quaternion": [ 0.548, -0.049, 0.156, -0.820 ] } }, { "index": 1188, "nt1": "///B/5", "nt2": "///B/111", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -166.693, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.469, "chi2": -154.129, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.066, "C1C1_dist": 10.513, "N1N9_dist": 8.768, "C6C8_dist": 9.702, "CNNC_torsion": 5.747, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.89],N1(imino)-N3[2.89],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 9.046, "planarity": 0.258, "simple_Shear": -0.189, "simple_Stretch": -0.382, "simple_Buckle": -7.378, "simple_Propeller": -5.234, "bp_simpleParams": [ -0.189, -0.382, -1.281, -7.378, -5.234, 1.688 ], "bp_params": [ -0.184, -0.385, -1.281, -7.316, -5.320, 1.686 ], "frame": { "rmsd": null, "origin": [ 171.606, 164.194, 75.502 ], "x_axis": [ 0.080, -0.971, -0.226 ], "y_axis": [ 0.957, 0.138, -0.255 ], "z_axis": [ 0.279, -0.196, 0.940 ], "quaternion": [ 0.734, -0.020, 0.172, -0.656 ] } }, { "index": 1189, "nt1": "///B/6", "nt2": "///B/110", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.282, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 63.029, "chi2": -171.749, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 42.495, "C1C1_dist": 10.242, "N1N9_dist": 8.492, "C6C8_dist": 9.348, "CNNC_torsion": 7.948, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.76],O2(carbonyl)-N2(amino)[3.22],N3(imino)-O6(carbonyl)[2.73]", "interBase_angle": 3.921, "planarity": 0.258, "simple_Shear": 1.874, "simple_Stretch": -0.547, "simple_Buckle": 2.745, "simple_Propeller": -2.799, "bp_simpleParams": [ 1.874, -0.547, -1.209, 2.745, -2.799, -2.527 ], "bp_params": [ 1.743, -0.880, -1.209, 2.187, -3.254, -2.527 ], "frame": { "rmsd": null, "origin": [ 171.884, 162.819, 78.542 ], "x_axis": [ 0.682, -0.617, -0.392 ], "y_axis": [ 0.640, 0.763, -0.088 ], "z_axis": [ 0.353, -0.191, 0.916 ], "quaternion": [ 0.917, 0.028, 0.203, -0.343 ] } }, { "index": 1190, "nt1": "///B/6", "nt2": "///B/111", "bp": "U-C", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.282, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 85.330, "chi2": -154.129, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 65.614, "C1C1_dist": 7.525, "N1N9_dist": 6.799, "C6C8_dist": 8.602, "CNNC_torsion": -11.464, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)*O2(carbonyl)[3.03],N3(imino)-N3[3.83]", "unusual_base2base_hbonds": 1, "interBase_angle": 6.824, "planarity": 0.360, "simple_Shear": 1.302, "simple_Stretch": -0.955, "simple_Buckle": -6.680, "simple_Propeller": -1.392, "bp_simpleParams": [ 1.302, -0.955, 1.976, -6.680, -1.392, 41.677 ], "bp_params": [ 1.157, -1.127, 1.976, -6.809, -0.447, 41.610 ], "frame": { "rmsd": null, "origin": [ 171.980, 163.033, 76.860 ], "x_axis": [ 0.397, -0.862, -0.316 ], "y_axis": [ 0.877, 0.458, -0.147 ], "z_axis": [ 0.271, -0.219, 0.937 ], "quaternion": [ 0.836, 0.021, 0.176, -0.520 ] } }, { "index": 1191, "nt1": "///B/7", "nt2": "///B/109", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -165.180, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.083, "chi2": -164.103, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.854, "C1C1_dist": 10.480, "N1N9_dist": 8.809, "C6C8_dist": 9.789, "CNNC_torsion": 2.154, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.84],N2(amino)-O2(carbonyl)[2.68]", "interBase_angle": 4.311, "planarity": 0.134, "simple_Shear": -0.264, "simple_Stretch": -0.245, "simple_Buckle": -2.783, "simple_Propeller": -3.293, "bp_simpleParams": [ -0.264, -0.245, -0.629, -2.783, -3.293, 2.293 ], "bp_params": [ -0.258, -0.250, -0.629, -2.713, -3.351, 2.294 ], "frame": { "rmsd": null, "origin": [ 171.758, 159.243, 82.051 ], "x_axis": [ 0.729, -0.426, -0.536 ], "y_axis": [ 0.515, 0.857, 0.020 ], "z_axis": [ 0.450, -0.291, 0.844 ], "quaternion": [ 0.926, 0.084, 0.266, -0.254 ] } }, { "index": 1192, "nt1": "///B/8", "nt2": "///B/108", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 176.345, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 51.702, "chi2": -175.702, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.425, "C1C1_dist": 10.732, "N1N9_dist": 8.877, "C6C8_dist": 9.755, "CNNC_torsion": 7.307, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.83],N1(imino)-N3[2.86],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 3.250, "planarity": 0.159, "simple_Shear": -0.106, "simple_Stretch": -0.286, "simple_Buckle": -2.245, "simple_Propeller": 2.350, "bp_simpleParams": [ -0.106, -0.286, -0.777, -2.245, 2.350, -2.119 ], "bp_params": [ -0.105, -0.287, -0.777, -2.260, 2.336, -2.119 ], "frame": { "rmsd": null, "origin": [ 172.697, 156.970, 84.530 ], "x_axis": [ 0.826, 0.145, -0.545 ], "y_axis": [ 0.048, 0.945, 0.324 ], "z_axis": [ 0.562, -0.294, 0.773 ], "quaternion": [ 0.941, 0.164, 0.294, 0.026 ] } }, { "index": 1193, "nt1": "///B/9", "nt2": "///B/107", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 170.656, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.436, "chi2": -155.746, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 52.622, "C1C1_dist": 10.761, "N1N9_dist": 8.903, "C6C8_dist": 9.799, "CNNC_torsion": 4.826, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.75],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.87]", "interBase_angle": 7.094, "planarity": 0.134, "simple_Shear": 0.130, "simple_Stretch": -0.223, "simple_Buckle": 6.946, "simple_Propeller": -1.441, "bp_simpleParams": [ 0.130, -0.223, -0.719, 6.946, -1.441, -0.916 ], "bp_params": [ 0.128, -0.224, -0.719, 6.935, -1.497, -0.915 ], "frame": { "rmsd": null, "origin": [ 174.984, 155.154, 86.011 ], "x_axis": [ 0.712, 0.610, -0.348 ], "y_axis": [ -0.353, 0.739, 0.573 ], "z_axis": [ 0.607, -0.286, 0.742 ], "quaternion": [ 0.893, 0.240, 0.267, 0.269 ] } }, { "index": 1194, "nt1": "///B/14", "nt2": "///B/66", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 176.818, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.516, "chi2": -168.942, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.928, "C1C1_dist": 10.534, "N1N9_dist": 8.810, "C6C8_dist": 9.754, "CNNC_torsion": 7.496, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.84],N2(amino)-O2(carbonyl)[2.70]", "interBase_angle": 4.299, "planarity": 0.187, "simple_Shear": -0.191, "simple_Stretch": -0.277, "simple_Buckle": 4.234, "simple_Propeller": 0.744, "bp_simpleParams": [ -0.191, -0.277, -0.649, 4.234, 0.744, 0.640 ], "bp_params": [ -0.187, -0.280, -0.649, 4.223, 0.805, 0.640 ], "frame": { "rmsd": null, "origin": [ 185.859, 145.089, 88.051 ], "x_axis": [ -0.724, -0.581, -0.371 ], "y_axis": [ -0.531, 0.813, -0.237 ], "z_axis": [ 0.440, 0.026, -0.898 ], "quaternion": [ 0.219, -0.300, 0.927, -0.057 ] } }, { "index": 1195, "nt1": "///B/15", "nt2": "///B/65", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.077, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.040, "chi2": -178.895, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 56.309, "C1C1_dist": 10.434, "N1N9_dist": 8.790, "C6C8_dist": 9.790, "CNNC_torsion": 3.466, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.64],N3-N1(imino)[2.82],N4(amino)-O6(carbonyl)[2.89]", "interBase_angle": 3.939, "planarity": 0.122, "simple_Shear": 0.172, "simple_Stretch": -0.243, "simple_Buckle": 3.336, "simple_Propeller": -2.094, "bp_simpleParams": [ 0.172, -0.243, -0.606, 3.336, -2.094, 2.825 ], "bp_params": [ 0.169, -0.246, -0.606, 3.309, -2.137, 2.824 ], "frame": { "rmsd": null, "origin": [ 187.506, 143.331, 85.241 ], "x_axis": [ -0.901, 0.041, -0.431 ], "y_axis": [ 0.025, 0.999, 0.043 ], "z_axis": [ 0.432, 0.028, -0.901 ], "quaternion": [ 0.221, 0.017, 0.975, 0.018 ] } }, { "index": 1196, "nt1": "///B/16", "nt2": "///B/63", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.256, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.335, "chi2": -159.375, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.259, "C1C1_dist": 10.463, "N1N9_dist": 8.825, "C6C8_dist": 9.814, "CNNC_torsion": 3.687, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.96],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.69]", "interBase_angle": 9.590, "planarity": 0.167, "simple_Shear": -0.233, "simple_Stretch": -0.218, "simple_Buckle": -9.137, "simple_Propeller": -2.910, "bp_simpleParams": [ -0.233, -0.218, -0.892, -9.137, -2.910, 2.886 ], "bp_params": [ -0.229, -0.222, -0.892, -9.086, -3.066, 2.878 ], "frame": { "rmsd": null, "origin": [ 187.353, 142.906, 80.948 ], "x_axis": [ -0.701, 0.673, -0.234 ], "y_axis": [ 0.619, 0.738, 0.268 ], "z_axis": [ 0.353, 0.043, -0.935 ], "quaternion": [ 0.160, 0.352, 0.918, 0.084 ] } }, { "index": 1197, "nt1": "///B/16", "nt2": "///B/106", "bp": "G+C", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "intra_chain": true, "chi1": -171.256, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 20.708, "chi2": -93.165, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 62.731, "C1C1_dist": 10.964, "N1N9_dist": 9.080, "C6C8_dist": 9.970, "CNNC_torsion": 150.877, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)*O2(carbonyl)[2.85]", "interBase_angle": 32.609, "planarity": 0.589, "simple_Shear": 1.581, "simple_Stretch": 1.337, "simple_Buckle": -31.830, "simple_Propeller": 7.087, "bp_simpleParams": [ 1.581, 1.337, 1.523, -31.830, 7.087, 127.745 ], "bp_params": [ -1.064, 1.776, 1.523, -11.982, -30.328, 129.079 ], "frame": { "rmsd": null, "origin": [ 186.829, 141.798, 82.165 ], "x_axis": [ -0.923, -0.345, -0.171 ], "y_axis": [ -0.316, 0.932, -0.175 ], "z_axis": [ 0.220, -0.108, -0.969 ], "quaternion": [ 0.100, -0.169, 0.978, -0.072 ] } }, { "index": 1198, "nt1": "///B/17", "nt2": "///B/62", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 176.099, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.844, "chi2": -173.501, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.807, "C1C1_dist": 10.564, "N1N9_dist": 8.762, "C6C8_dist": 9.699, "CNNC_torsion": 10.109, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.90],N1-N3(imino)[2.74]", "interBase_angle": 12.055, "planarity": 0.153, "simple_Shear": 0.104, "simple_Stretch": -0.222, "simple_Buckle": -7.051, "simple_Propeller": 9.778, "bp_simpleParams": [ 0.104, -0.222, -0.402, -7.051, 9.778, -0.315 ], "bp_params": [ 0.102, -0.223, -0.402, -6.917, 9.873, -0.315 ], "frame": { "rmsd": null, "origin": [ 186.464, 142.467, 77.181 ], "x_axis": [ -0.339, 0.940, 0.047 ], "y_axis": [ 0.892, 0.305, 0.335 ], "z_axis": [ 0.300, 0.155, -0.941 ], "quaternion": [ 0.079, 0.569, 0.804, 0.152 ] } }, { "index": 1199, "nt1": "///B/18", "nt2": "///B/61", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -174.029, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.920, "chi2": -155.553, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.680, "C1C1_dist": 10.153, "N1N9_dist": 8.624, "C6C8_dist": 9.709, "CNNC_torsion": 3.947, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.98],N1-N3(imino)[2.70]", "interBase_angle": 2.166, "planarity": 0.083, "simple_Shear": 0.046, "simple_Stretch": -0.222, "simple_Buckle": 1.805, "simple_Propeller": 1.198, "bp_simpleParams": [ 0.046, -0.222, -0.312, 1.805, 1.198, 5.631 ], "bp_params": [ 0.044, -0.222, -0.312, 1.817, 1.180, 5.631 ], "frame": { "rmsd": null, "origin": [ 186.060, 143.451, 74.100 ], "x_axis": [ 0.114, 0.914, 0.390 ], "y_axis": [ 0.950, -0.215, 0.228 ], "z_axis": [ 0.292, 0.344, -0.892 ], "quaternion": [ -0.039, 0.745, 0.625, 0.229 ] } }, { "index": 1200, "nt1": "///B/19", "nt2": "///B/60", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 171.784, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.049, "chi2": -170.218, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.931, "C1C1_dist": 10.627, "N1N9_dist": 8.871, "C6C8_dist": 9.807, "CNNC_torsion": 6.765, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.89],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 2.699, "planarity": 0.144, "simple_Shear": -0.154, "simple_Stretch": -0.237, "simple_Buckle": -2.699, "simple_Propeller": 0.014, "bp_simpleParams": [ -0.154, -0.237, -0.718, -2.699, 0.014, 0.213 ], "bp_params": [ -0.152, -0.239, -0.718, -2.699, -0.014, 0.213 ], "frame": { "rmsd": null, "origin": [ 185.591, 145.982, 71.603 ], "x_axis": [ 0.484, 0.383, 0.787 ], "y_axis": [ 0.771, -0.612, -0.176 ], "z_axis": [ 0.415, 0.692, -0.591 ], "quaternion": [ -0.265, 0.820, 0.352, 0.367 ] } }, { "index": 1201, "nt1": "///B/20", "nt2": "///B/59", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -152.403, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 59.969, "chi2": -177.883, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.355, "C1C1_dist": 10.368, "N1N9_dist": 8.789, "C6C8_dist": 9.843, "CNNC_torsion": -6.163, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[3.04],N1-N3(imino)[2.82]", "interBase_angle": 6.489, "planarity": 0.082, "simple_Shear": 0.078, "simple_Stretch": -0.090, "simple_Buckle": 6.289, "simple_Propeller": -1.599, "bp_simpleParams": [ 0.078, -0.090, 0.344, 6.289, -1.599, 4.138 ], "bp_params": [ 0.077, -0.091, 0.344, 6.269, -1.674, 4.132 ], "frame": { "rmsd": null, "origin": [ 184.839, 149.608, 70.113 ], "x_axis": [ 0.747, -0.106, 0.656 ], "y_axis": [ 0.305, -0.822, -0.481 ], "z_axis": [ 0.590, 0.560, -0.582 ], "quaternion": [ -0.293, 0.888, 0.056, 0.351 ] } }, { "index": 1202, "nt1": "///B/21", "nt2": "///B/58", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -161.278, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 55.728, "chi2": -164.526, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.121, "C1C1_dist": 10.401, "N1N9_dist": 8.706, "C6C8_dist": 9.674, "CNNC_torsion": -2.750, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.89],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.77]", "interBase_angle": 17.763, "planarity": 0.357, "simple_Shear": -0.167, "simple_Stretch": -0.253, "simple_Buckle": 16.266, "simple_Propeller": -7.137, "bp_simpleParams": [ -0.167, -0.253, -0.619, 16.266, -7.137, 2.710 ], "bp_params": [ -0.163, -0.255, -0.619, 16.397, -6.831, 2.687 ], "frame": { "rmsd": null, "origin": [ 186.320, 152.459, 68.842 ], "x_axis": [ 0.806, -0.504, 0.309 ], "y_axis": [ -0.085, -0.616, -0.784 ], "z_axis": [ 0.586, 0.605, -0.539 ], "quaternion": [ -0.404, 0.860, -0.171, 0.260 ] } }, { "index": 1203, "nt1": "///B/22", "nt2": "///B/57", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "cW.", "DSSR": "cW-.", "intra_chain": true, "chi1": -117.162, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 40.293, "chi2": -177.660, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 20.040, "C1C1_dist": 12.727, "N1N9_dist": 10.229, "C6C8_dist": 9.774, "CNNC_torsion": -20.052, "hbonds_num": 1, "hbonds_desc": "N1(imino)-O6(carbonyl)[2.51]", "interBase_angle": 42.214, "planarity": 0.748, "simple_Shear": 2.180, "simple_Stretch": 1.168, "simple_Buckle": 27.496, "simple_Propeller": -32.031, "bp_simpleParams": [ 2.180, 1.168, -2.298, 27.496, -32.031, -48.653 ], "bp_params": [ 2.383, 0.662, -2.298, 19.672, -37.350, -50.410 ], "frame": { "rmsd": null, "origin": [ 186.455, 156.518, 66.927 ], "x_axis": [ 0.588, -0.692, -0.419 ], "y_axis": [ -0.554, 0.033, -0.832 ], "z_axis": [ 0.590, 0.721, -0.364 ], "quaternion": [ 0.560, -0.693, 0.450, -0.062 ] } }, { "index": 1204, "nt1": "///B/26", "nt2": "///B/54", "bp": "C-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.048, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 68.440, "chi2": -139.898, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 23.966, "C1C1_dist": 11.200, "N1N9_dist": 9.346, "C6C8_dist": 9.998, "CNNC_torsion": -15.456, "hbonds_num": 1, "hbonds_desc": "O2(carbonyl)*O4(carbonyl)[3.78]", "interBase_angle": 19.714, "planarity": 0.235, "simple_Shear": 4.344, "simple_Stretch": 1.008, "simple_Buckle": -3.083, "simple_Propeller": -19.472, "bp_simpleParams": [ 4.344, 1.008, 0.130, -3.083, -19.472, -14.869 ], "bp_params": [ 4.342, -1.016, 0.130, -11.350, -16.119, -14.944 ], "frame": { "rmsd": null, "origin": [ 187.341, 160.218, 63.868 ], "x_axis": [ -0.312, 0.589, -0.745 ], "y_axis": [ -0.436, 0.608, 0.663 ], "z_axis": [ 0.844, 0.531, 0.067 ], "quaternion": [ 0.584, 0.057, 0.681, 0.439 ] } }, { "index": 1205, "nt1": "///B/27", "nt2": "///B/53", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -178.963, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 47.982, "chi2": -175.225, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 57.396, "C1C1_dist": 9.994, "N1N9_dist": 8.216, "C6C8_dist": 9.072, "CNNC_torsion": 17.819, "hbonds_num": 2, "hbonds_desc": "N6(amino)-O4(carbonyl)[2.82],N1-N3(imino)[2.85]", "interBase_angle": 3.579, "planarity": 0.389, "simple_Shear": -1.027, "simple_Stretch": -0.942, "simple_Buckle": 3.168, "simple_Propeller": 1.665, "bp_simpleParams": [ -1.027, -0.942, -1.578, 3.168, 1.665, -3.102 ], "bp_params": [ -0.929, -1.039, -1.578, 2.988, 1.969, -3.102 ], "frame": { "rmsd": null, "origin": [ 189.798, 162.587, 62.242 ], "x_axis": [ -0.495, 0.549, -0.674 ], "y_axis": [ -0.331, 0.598, 0.730 ], "z_axis": [ 0.804, 0.584, -0.114 ], "quaternion": [ 0.497, 0.074, 0.743, 0.442 ] } }, { "index": 1206, "nt1": "///B/27", "nt2": "///B/56", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -178.963, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 111.987, "chi2": -177.906, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 42.866, "C1C1_dist": 9.241, "N1N9_dist": 8.748, "C6C8_dist": 10.262, "CNNC_torsion": -37.850, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[3.36],N3-N6(amino)[3.12]", "interBase_angle": 30.705, "planarity": 0.468, "simple_Shear": 4.541, "simple_Stretch": 2.488, "simple_Buckle": 3.101, "simple_Propeller": -30.548, "bp_simpleParams": [ 4.541, 2.488, 2.126, 3.101, -30.548, 45.792 ], "bp_params": [ 5.172, -0.237, 2.126, -13.309, -27.670, 46.742 ], "frame": { "rmsd": null, "origin": [ 190.062, 160.855, 64.928 ], "x_axis": [ -0.520, 0.097, -0.849 ], "y_axis": [ -0.404, 0.847, 0.344 ], "z_axis": [ 0.753, 0.522, -0.401 ], "quaternion": [ 0.481, -0.092, 0.832, 0.260 ] } }, { "index": 1207, "nt1": "///B/28", "nt2": "///B/52", "bp": "C-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 162.502, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 44.573, "chi2": -164.446, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.710, "C1C1_dist": 8.921, "N1N9_dist": 7.023, "C6C8_dist": 7.653, "CNNC_torsion": 43.268, "hbonds_num": 0, "hbonds_desc": "", "interBase_angle": 8.310, "planarity": 0.829, "simple_Shear": -0.807, "simple_Stretch": -2.847, "simple_Buckle": 8.297, "simple_Propeller": -0.457, "bp_simpleParams": [ -0.807, -2.847, -2.936, 8.297, -0.457, -10.431 ], "bp_params": [ -0.563, -2.905, -2.936, 8.306, 0.248, -10.403 ], "frame": { "rmsd": null, "origin": [ 193.374, 163.899, 61.567 ], "x_axis": [ -0.609, 0.750, -0.258 ], "y_axis": [ -0.049, 0.289, 0.956 ], "z_axis": [ 0.792, 0.595, -0.139 ], "quaternion": [ 0.368, 0.246, 0.714, 0.543 ] } }, { "index": 1208, "nt1": "///B/28", "nt2": "///B/53", "bp": "C-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 162.502, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.420, "chi2": -175.225, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 73.642, "C1C1_dist": 7.575, "N1N9_dist": 6.205, "C6C8_dist": 7.595, "CNNC_torsion": -15.610, "hbonds_num": 2, "hbonds_desc": "N3-N3(imino)[2.84],N4(amino)-O4(carbonyl)[2.89]", "interBase_angle": 7.244, "planarity": 0.340, "simple_Shear": -1.694, "simple_Stretch": -2.323, "simple_Buckle": 6.883, "simple_Propeller": 2.257, "bp_simpleParams": [ -1.694, -2.323, 1.485, 6.883, 2.257, 20.714 ], "bp_params": [ -1.274, -2.577, 1.485, 6.400, 3.394, 20.692 ], "frame": { "rmsd": null, "origin": [ 191.242, 163.004, 61.337 ], "x_axis": [ -0.567, 0.650, -0.506 ], "y_axis": [ -0.200, 0.488, 0.850 ], "z_axis": [ 0.799, 0.583, -0.146 ], "quaternion": [ 0.440, 0.152, 0.742, 0.483 ] } }, { "index": 1209, "nt1": "///B/28", "nt2": "///B/55", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": 162.502, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 105.578, "chi2": -176.112, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 37.715, "C1C1_dist": 8.811, "N1N9_dist": 8.074, "C6C8_dist": 9.332, "CNNC_torsion": -25.127, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N1[2.76],O2(carbonyl)-N6(amino)[2.35]", "interBase_angle": 21.913, "planarity": 0.375, "simple_Shear": 5.320, "simple_Stretch": 1.501, "simple_Buckle": -11.515, "simple_Propeller": -18.644, "bp_simpleParams": [ 5.320, 1.501, 2.117, -11.515, -18.644, 36.468 ], "bp_params": [ 5.229, -1.793, 2.117, -20.057, -8.827, 36.049 ], "frame": { "rmsd": null, "origin": [ 193.183, 161.137, 63.034 ], "x_axis": [ -0.625, 0.516, -0.586 ], "y_axis": [ -0.096, 0.694, 0.713 ], "z_axis": [ 0.775, 0.502, -0.385 ], "quaternion": [ 0.414, 0.128, 0.822, 0.370 ] } }, { "index": 1210, "nt1": "///B/29", "nt2": "///B/49", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -159.505, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 57.362, "chi2": -142.619, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 51.224, "C1C1_dist": 10.598, "N1N9_dist": 8.884, "C6C8_dist": 9.814, "CNNC_torsion": 8.440, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.79],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.94]", "interBase_angle": 3.013, "planarity": 0.211, "simple_Shear": 0.286, "simple_Stretch": -0.249, "simple_Buckle": -2.565, "simple_Propeller": 1.581, "bp_simpleParams": [ 0.286, -0.249, -0.855, -2.565, 1.581, 0.097 ], "bp_params": [ 0.280, -0.255, -0.855, -2.529, 1.639, 0.097 ], "frame": { "rmsd": null, "origin": [ 194.018, 171.553, 62.211 ], "x_axis": [ -0.462, 0.169, 0.871 ], "y_axis": [ 0.495, -0.765, 0.411 ], "z_axis": [ 0.736, 0.621, 0.270 ], "quaternion": [ -0.103, 0.508, 0.327, 0.790 ] } }, { "index": 1211, "nt1": "///B/29", "nt2": "///B/51", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -159.505, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 114.523, "chi2": 175.967, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 27.573, "C1C1_dist": 8.819, "N1N9_dist": 8.167, "C6C8_dist": 9.184, "CNNC_torsion": 42.092, "hbonds_num": 3, "hbonds_desc": "O3'*N1[2.99],O2'(hydroxyl)-N6(amino)[2.74],O2(carbonyl)-N6(amino)[2.01]", "interBase_angle": 28.668, "planarity": 0.371, "simple_Shear": 6.523, "simple_Stretch": 2.270, "simple_Buckle": -27.740, "simple_Propeller": 7.234, "bp_simpleParams": [ 6.523, 2.270, -0.623, -27.740, 7.234, 31.364 ], "bp_params": [ 6.370, -2.669, -0.623, -15.912, 23.846, 31.739 ], "frame": { "rmsd": null, "origin": [ 195.761, 169.198, 60.629 ], "x_axis": [ -0.425, 0.493, 0.759 ], "y_axis": [ 0.439, -0.621, 0.649 ], "z_axis": [ 0.792, 0.609, 0.047 ], "quaternion": [ 0.019, 0.536, 0.435, 0.723 ] } }, { "index": 1212, "nt1": "///B/30", "nt2": "///B/48", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -153.162, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 56.867, "chi2": -99.545, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 58.605, "C1C1_dist": 10.356, "N1N9_dist": 8.789, "C6C8_dist": 9.796, "CNNC_torsion": -1.278, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.66],N3-N1(imino)[2.81],N4(amino)-O6(carbonyl)[2.88]", "interBase_angle": 3.811, "planarity": 0.050, "simple_Shear": 0.185, "simple_Stretch": -0.222, "simple_Buckle": -3.404, "simple_Propeller": -1.714, "bp_simpleParams": [ 0.185, -0.222, 0.106, -3.404, -1.714, 1.708 ], "bp_params": [ 0.182, -0.225, 0.106, -3.429, -1.663, 1.708 ], "frame": { "rmsd": null, "origin": [ 195.617, 174.751, 62.995 ], "x_axis": [ -0.072, -0.351, 0.934 ], "y_axis": [ 0.674, -0.707, -0.214 ], "z_axis": [ 0.736, 0.614, 0.287 ], "quaternion": [ -0.356, 0.581, 0.139, 0.719 ] } }, { "index": 1213, "nt1": "///B/31", "nt2": "///B/33", "bp": "G+U", "name": "--", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -178.326, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 115.746, "chi2": -170.908, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 58.885, "C1C1_dist": 8.080, "N1N9_dist": 8.031, "C6C8_dist": 8.051, "CNNC_torsion": -50.708, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O4(carbonyl)[3.49]", "interBase_angle": 43.566, "planarity": 0.703, "simple_Shear": 0.832, "simple_Stretch": 8.745, "simple_Buckle": -4.187, "simple_Propeller": -43.364, "bp_simpleParams": [ 0.832, 8.745, -1.188, -4.187, -43.364, 28.683 ], "bp_params": [ 8.305, 2.864, -1.188, -41.142, -14.330, 27.152 ], "frame": { "rmsd": null, "origin": [ 195.401, 180.716, 62.844 ], "x_axis": [ -0.079, -0.619, 0.781 ], "y_axis": [ 0.922, -0.344, -0.180 ], "z_axis": [ 0.380, 0.706, 0.598 ], "quaternion": [ 0.542, -0.409, -0.185, -0.711 ] } }, { "index": 1214, "nt1": "///B/34", "nt2": "///B/45", "bp": "C+C", "name": "--", "Saenger": "--", "LW": "tHH", "DSSR": "tM+M", "intra_chain": true, "chi1": -147.516, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 9.247, "chi2": 49.446, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 23.314, "C1C1_dist": 11.795, "N1N9_dist": 9.016, "C6C8_dist": 7.052, "CNNC_torsion": 155.293, "hbonds_num": 0, "hbonds_desc": "", "interBase_angle": 28.635, "planarity": 0.274, "simple_Shear": -8.555, "simple_Stretch": 2.291, "simple_Buckle": 5.495, "simple_Propeller": -28.103, "bp_simpleParams": [ -8.555, 2.291, 0.236, 5.495, -28.103, -166.984 ], "bp_params": [ -6.448, 6.071, 0.236, -8.578, -27.320, -167.312 ], "frame": { "rmsd": null, "origin": [ 197.058, 180.994, 67.821 ], "x_axis": [ 0.946, 0.321, -0.038 ], "y_axis": [ -0.219, 0.551, -0.805 ], "z_axis": [ -0.237, 0.770, 0.592 ], "quaternion": [ 0.879, -0.448, -0.057, 0.153 ] } }, { "index": 1215, "nt1": "///B/36", "nt2": "///B/42", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.286, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 49.932, "chi2": -38.867, "conf2": "--", "pucker2": "~C2'-endo", "lambda2": 51.643, "C1C1_dist": 10.588, "N1N9_dist": 8.735, "C6C8_dist": 9.564, "CNNC_torsion": 15.600, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.82],N3-N1(imino)[2.88],N4(amino)-O6(carbonyl)[2.78]", "interBase_angle": 2.238, "planarity": 0.329, "simple_Shear": 0.051, "simple_Stretch": -0.538, "simple_Buckle": -1.891, "simple_Propeller": 1.198, "bp_simpleParams": [ 0.051, -0.538, -1.368, -1.891, 1.198, -3.829 ], "bp_params": [ 0.051, -0.538, -1.368, -1.891, 1.198, -3.829 ], "frame": { "rmsd": null, "origin": [ 201.209, 182.778, 69.474 ], "x_axis": [ 0.406, 0.713, -0.572 ], "y_axis": [ -0.482, 0.698, 0.529 ], "z_axis": [ 0.777, 0.061, 0.627 ], "quaternion": [ 0.826, 0.142, 0.408, 0.362 ] } }, { "index": 1216, "nt1": "///B/37", "nt2": "///B/39", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 88.243, "conf1": "syn", "pucker1": "~C3'-endo", "lambda1": 51.566, "chi2": 65.409, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 44.872, "C1C1_dist": 11.591, "N1N9_dist": 9.641, "C6C8_dist": 9.856, "CNNC_torsion": 14.863, "hbonds_num": 1, "hbonds_desc": "N1-N6(amino)[2.63]", "interBase_angle": 57.074, "planarity": 0.832, "simple_Shear": 1.363, "simple_Stretch": 1.506, "simple_Buckle": -56.205, "simple_Propeller": -9.921, "bp_simpleParams": [ 1.363, 1.506, -0.869, -56.205, -9.921, -24.760 ], "bp_params": [ 1.589, 1.264, -0.869, -57.074, 0.116, -21.829 ], "frame": { "rmsd": null, "origin": [ 208.535, 182.734, 75.438 ], "x_axis": [ 0.421, 0.162, -0.893 ], "y_axis": [ -0.815, 0.499, -0.294 ], "z_axis": [ 0.398, 0.851, 0.342 ], "quaternion": [ 0.752, -0.381, 0.429, 0.325 ] } }, { "index": 1217, "nt1": "///B/38", "nt2": "///B/45", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -75.084, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 17.845, "chi2": 49.446, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 86.580, "C1C1_dist": 9.672, "N1N9_dist": 8.317, "C6C8_dist": 8.555, "CNNC_torsion": -109.590, "hbonds_num": 2, "hbonds_desc": "N3(imino)-OP1[3.03],O4(carbonyl)*O2(carbonyl)[2.84]", "interBase_angle": 42.211, "planarity": 0.489, "simple_Shear": -7.519, "simple_Stretch": 3.185, "simple_Buckle": -33.897, "simple_Propeller": 25.155, "bp_simpleParams": [ -7.519, 3.185, 0.109, -33.897, 25.155, -29.442 ], "bp_params": [ -7.040, -4.137, 0.109, -40.322, -12.487, -27.888 ], "frame": { "rmsd": null, "origin": [ 200.191, 177.458, 72.978 ], "x_axis": [ -0.335, 0.504, -0.796 ], "y_axis": [ 0.875, 0.481, -0.064 ], "z_axis": [ 0.351, -0.718, -0.602 ], "quaternion": [ 0.369, 0.443, 0.777, -0.251 ] } }, { "index": 1218, "nt1": "///B/40", "nt2": "///B/44", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm-W", "intra_chain": true, "chi1": -126.973, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 106.188, "chi2": -73.990, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 23.055, "C1C1_dist": 9.118, "N1N9_dist": 8.279, "C6C8_dist": 9.184, "CNNC_torsion": -79.603, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[2.89],O2'(hydroxyl)-N1[2.43],O2(carbonyl)-N6(amino)[2.56]", "interBase_angle": 56.416, "planarity": 0.702, "simple_Shear": 6.729, "simple_Stretch": 2.603, "simple_Buckle": 41.990, "simple_Propeller": -37.678, "bp_simpleParams": [ 6.729, 2.603, 0.815, 41.990, -37.678, 34.734 ], "bp_params": [ 6.609, -2.894, 0.815, 3.534, -56.306, 39.047 ], "frame": { "rmsd": null, "origin": [ 207.328, 170.602, 73.190 ], "x_axis": [ 0.665, -0.662, -0.345 ], "y_axis": [ 0.554, 0.128, 0.822 ], "z_axis": [ -0.500, -0.738, 0.452 ], "quaternion": [ 0.749, 0.521, -0.052, -0.406 ] } }, { "index": 1219, "nt1": "///B/42", "nt2": "///B/45", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "intra_chain": true, "chi1": -38.867, "conf1": "--", "pucker1": "~C2'-endo", "lambda1": 88.907, "chi2": 49.446, "conf2": "syn", "pucker2": "~C2'-endo", "lambda2": 44.633, "C1C1_dist": 8.637, "N1N9_dist": 7.595, "C6C8_dist": 8.875, "CNNC_torsion": 31.039, "hbonds_num": 1, "hbonds_desc": "N2(amino)-O2(carbonyl)[3.20]", "interBase_angle": 64.571, "planarity": 0.922, "simple_Shear": 2.243, "simple_Stretch": 0.432, "simple_Buckle": 45.015, "simple_Propeller": 46.294, "bp_simpleParams": [ 2.243, 0.432, -1.689, 45.015, 46.294, 24.335 ], "bp_params": [ 2.258, -0.342, -1.689, 57.838, 28.708, 22.234 ], "frame": { "rmsd": null, "origin": [ 201.201, 181.627, 70.067 ], "x_axis": [ 0.137, 0.785, -0.604 ], "y_axis": [ 0.874, -0.383, -0.300 ], "z_axis": [ -0.467, -0.487, -0.738 ], "quaternion": [ 0.062, 0.751, 0.552, -0.357 ] } }, { "index": 1220, "nt1": "///B/49", "nt2": "///B/51", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -142.619, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 99.166, "chi2": 175.967, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 40.008, "C1C1_dist": 10.201, "N1N9_dist": 9.333, "C6C8_dist": 9.243, "CNNC_torsion": -24.996, "hbonds_num": 1, "hbonds_desc": "N2(amino)*N6(amino)[3.04]", "interBase_angle": 26.394, "planarity": 0.393, "simple_Shear": -0.627, "simple_Stretch": 6.624, "simple_Buckle": 18.587, "simple_Propeller": -18.740, "bp_simpleParams": [ -0.627, 6.624, -0.272, 18.587, -18.740, -30.750 ], "bp_params": [ 6.215, 2.376, -0.272, -13.087, -22.921, -31.158 ], "frame": { "rmsd": null, "origin": [ 196.203, 169.342, 60.674 ], "x_axis": [ -0.420, 0.500, 0.757 ], "y_axis": [ -0.458, 0.604, -0.652 ], "z_axis": [ -0.783, -0.621, -0.025 ], "quaternion": [ 0.538, -0.015, -0.716, 0.445 ] } }, { "index": 1221, "nt1": "///B/50", "nt2": "///B/52", "bp": "A+G", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -145.959, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 87.244, "chi2": -164.446, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 39.055, "C1C1_dist": 9.437, "N1N9_dist": 8.239, "C6C8_dist": 8.098, "CNNC_torsion": 8.540, "hbonds_num": 1, "hbonds_desc": "N1*O6(carbonyl)[2.87]", "interBase_angle": 12.728, "planarity": 0.385, "simple_Shear": -1.399, "simple_Stretch": 3.530, "simple_Buckle": 8.169, "simple_Propeller": -9.761, "bp_simpleParams": [ -1.399, 3.530, -1.569, 8.169, -9.761, -54.736 ], "bp_params": [ 2.959, 2.380, -1.569, -6.914, -10.686, -54.855 ], "frame": { "rmsd": null, "origin": [ 193.703, 167.253, 62.010 ], "x_axis": [ -0.640, 0.705, 0.305 ], "y_axis": [ -0.192, 0.237, -0.952 ], "z_axis": [ -0.744, -0.668, -0.017 ], "quaternion": [ -0.381, 0.187, 0.688, -0.589 ] } }, { "index": 1222, "nt1": "///B/53", "nt2": "///B/55", "bp": "U+A", "name": "--", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "intra_chain": true, "chi1": -175.225, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 140.873, "chi2": -176.112, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 22.617, "C1C1_dist": 7.793, "N1N9_dist": 7.594, "C6C8_dist": 7.839, "CNNC_torsion": 18.311, "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N7[2.27],O2(carbonyl)-N6(amino)[2.61]", "interBase_angle": 29.039, "planarity": 0.355, "simple_Shear": 0.381, "simple_Stretch": 6.354, "simple_Buckle": -12.560, "simple_Propeller": -26.182, "bp_simpleParams": [ 0.381, 6.354, 0.036, -12.560, -26.182, -15.781 ], "bp_params": [ 6.145, -1.661, 0.036, -23.187, 17.482, -15.649 ], "frame": { "rmsd": null, "origin": [ 191.970, 161.747, 63.915 ], "x_axis": [ -0.562, 0.407, -0.720 ], "y_axis": [ 0.240, -0.753, -0.613 ], "z_axis": [ -0.792, -0.517, 0.326 ], "quaternion": [ 0.052, -0.465, -0.348, 0.812 ] } }, { "index": 1223, "nt1": "///B/54", "nt2": "///B/56", "bp": "U+A", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "intra_chain": true, "chi1": -139.898, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 99.829, "chi2": -177.906, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 29.268, "C1C1_dist": 7.907, "N1N9_dist": 6.913, "C6C8_dist": 6.994, "CNNC_torsion": 7.659, "hbonds_num": 2, "hbonds_desc": "O3'*OP2[3.06],O2(carbonyl)-N6(amino)[2.83]", "interBase_angle": 33.031, "planarity": 0.384, "simple_Shear": -0.198, "simple_Stretch": 2.832, "simple_Buckle": -31.087, "simple_Propeller": -11.165, "bp_simpleParams": [ -0.198, 2.832, 1.974, -31.087, -11.165, -49.892 ], "bp_params": [ 2.812, 0.390, 1.974, -13.040, 30.348, -51.187 ], "frame": { "rmsd": null, "origin": [ 189.150, 159.682, 66.705 ], "x_axis": [ -0.513, 0.141, -0.847 ], "y_axis": [ 0.377, -0.849, -0.370 ], "z_axis": [ -0.772, -0.509, 0.382 ], "quaternion": [ -0.071, -0.488, -0.265, 0.828 ] } }, { "index": 1224, "nt1": "///B/54", "nt2": "///B/57", "bp": "U+G", "name": "--", "Saenger": "--", "LW": ".WH", "DSSR": ".W+M", "intra_chain": true, "chi1": -139.898, "conf1": "anti", "pucker1": "~C2'-endo", "lambda1": 74.997, "chi2": -177.660, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 23.117, "C1C1_dist": 9.188, "N1N9_dist": 7.578, "C6C8_dist": 8.137, "CNNC_torsion": 96.017, "hbonds_num": 1, "hbonds_desc": "N3(imino)-O6(carbonyl)[3.17]", "interBase_angle": 31.901, "planarity": 0.625, "simple_Shear": 0.201, "simple_Stretch": 0.802, "simple_Buckle": -31.898, "simple_Propeller": 0.430, "bp_simpleParams": [ 0.201, 0.802, -1.958, -31.898, 0.430, -93.487 ], "bp_params": [ 0.798, -0.216, -1.958, 1.002, 31.885, -95.725 ], "frame": { "rmsd": null, "origin": [ 187.178, 158.687, 66.551 ], "x_axis": [ -0.323, -0.187, -0.928 ], "y_axis": [ 0.554, -0.832, -0.025 ], "z_axis": [ -0.767, -0.522, 0.373 ], "quaternion": [ -0.233, -0.533, -0.172, 0.795 ] } }, { "index": 1225, "nt1": "///B/65", "nt2": "///B/106", "bp": "G-C", "name": "~rHoogsteen", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": -178.895, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 3.131, "chi2": -93.165, "conf2": "anti", "pucker2": "~C2'-endo", "lambda2": 24.422, "C1C1_dist": 11.070, "N1N9_dist": 8.291, "C6C8_dist": 7.276, "CNNC_torsion": -172.956, "hbonds_num": 2, "hbonds_desc": "N7-N4(amino)[2.96],O6(carbonyl)*N3[2.83]", "unusual_base2base_hbonds": 1, "interBase_angle": 31.425, "planarity": 0.354, "simple_Shear": -2.854, "simple_Stretch": 0.526, "simple_Buckle": 13.358, "simple_Propeller": 28.445, "bp_simpleParams": [ -2.854, 0.526, 2.014, 13.358, 28.445, -83.994 ], "bp_params": [ -2.830, -0.641, 2.014, 0.869, 31.413, -86.165 ], "frame": { "rmsd": null, "origin": [ 187.083, 142.163, 83.988 ], "x_axis": [ -0.745, -0.662, -0.085 ], "y_axis": [ 0.631, -0.740, 0.234 ], "z_axis": [ -0.218, 0.121, 0.969 ], "quaternion": [ -0.348, -0.081, 0.095, 0.929 ] } }, { "index": 1226, "nt1": "///B/68", "nt2": "///B/104", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -171.773, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 54.368, "chi2": -174.453, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.062, "C1C1_dist": 10.609, "N1N9_dist": 8.881, "C6C8_dist": 9.836, "CNNC_torsion": 4.966, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.76],N3-N1(imino)[2.92],N4(amino)-O6(carbonyl)[2.95]", "interBase_angle": 2.478, "planarity": 0.204, "simple_Shear": 0.168, "simple_Stretch": -0.221, "simple_Buckle": -1.884, "simple_Propeller": -1.609, "bp_simpleParams": [ 0.168, -0.221, -0.829, -1.884, -1.609, 1.344 ], "bp_params": [ 0.165, -0.223, -0.829, -1.904, -1.585, 1.344 ], "frame": { "rmsd": null, "origin": [ 180.027, 140.454, 93.379 ], "x_axis": [ 0.643, -0.741, 0.193 ], "y_axis": [ 0.686, 0.669, 0.285 ], "z_axis": [ -0.341, -0.051, 0.939 ], "quaternion": [ 0.901, 0.093, -0.148, -0.396 ] } }, { "index": 1227, "nt1": "///B/69", "nt2": "///B/103", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.499, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.955, "chi2": -176.314, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.504, "C1C1_dist": 10.610, "N1N9_dist": 8.907, "C6C8_dist": 9.873, "CNNC_torsion": 1.088, "hbonds_num": 3, "hbonds_desc": "O2(carbonyl)-N2(amino)[2.72],N3-N1(imino)[2.86],N4(amino)-O6(carbonyl)[2.91]", "interBase_angle": 1.967, "planarity": 0.034, "simple_Shear": 0.163, "simple_Stretch": -0.156, "simple_Buckle": -1.347, "simple_Propeller": 1.434, "bp_simpleParams": [ 0.163, -0.156, -0.079, -1.347, 1.434, 0.837 ], "bp_params": [ 0.161, -0.158, -0.079, -1.330, 1.450, 0.837 ], "frame": { "rmsd": null, "origin": [ 178.282, 138.371, 96.433 ], "x_axis": [ 0.899, -0.284, 0.334 ], "y_axis": [ 0.272, 0.959, 0.085 ], "z_axis": [ -0.344, 0.014, 0.939 ], "quaternion": [ 0.974, 0.018, -0.174, -0.143 ] } }, { "index": 1228, "nt1": "///B/70", "nt2": "///B/102", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "intra_chain": true, "chi1": -168.693, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 95.451, "chi2": -179.834, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 9.066, "C1C1_dist": 9.766, "N1N9_dist": 8.541, "C6C8_dist": 8.996, "CNNC_torsion": -8.643, "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N6(amino)[3.04],N2(amino)-N7[2.78],N3-N6(amino)[2.89]", "interBase_angle": 0.517, "planarity": 0.006, "simple_Shear": 7.361, "simple_Stretch": 2.453, "simple_Buckle": 0.460, "simple_Propeller": -0.236, "bp_simpleParams": [ 7.361, 2.453, 0.020, 0.460, -0.236, -4.487 ], "bp_params": [ 6.723, -3.873, 0.020, 0.129, -0.501, -4.486 ], "frame": { "rmsd": null, "origin": [ 176.905, 137.298, 99.249 ], "x_axis": [ 0.696, 0.683, 0.221 ], "y_axis": [ -0.644, 0.731, -0.228 ], "z_axis": [ -0.318, 0.017, 0.948 ], "quaternion": [ 0.919, -0.067, -0.147, 0.361 ] } }, { "index": 1229, "nt1": "///B/71", "nt2": "///B/101", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "intra_chain": true, "chi1": 162.564, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 13.162, "chi2": -158.920, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 50.524, "C1C1_dist": 9.098, "N1N9_dist": 6.867, "C6C8_dist": 6.241, "CNNC_torsion": -155.380, "hbonds_num": 2, "hbonds_desc": "N7-N3(imino)[3.19],N6(amino)-O2(carbonyl)[2.25]", "interBase_angle": 30.372, "planarity": 0.414, "simple_Shear": -5.367, "simple_Stretch": 0.647, "simple_Buckle": -29.129, "simple_Propeller": 8.599, "bp_simpleParams": [ -5.367, 0.647, -2.099, -29.129, 8.599, -76.446 ], "bp_params": [ -4.302, -3.273, -2.099, -26.817, -14.258, -75.347 ], "frame": { "rmsd": null, "origin": [ 174.555, 133.133, 103.081 ], "x_axis": [ 0.862, 0.502, 0.071 ], "y_axis": [ -0.505, 0.863, 0.029 ], "z_axis": [ -0.047, -0.061, 0.997 ], "quaternion": [ 0.965, 0.023, -0.030, 0.261 ] } }, { "index": 1230, "nt1": "///B/72", "nt2": "///B/100", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "c.W", "DSSR": "c.-W", "intra_chain": true, "chi1": -169.590, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 12.137, "chi2": -168.435, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 45.163, "C1C1_dist": 13.040, "N1N9_dist": 10.578, "C6C8_dist": 10.298, "CNNC_torsion": -4.460, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N1(imino)[2.85]", "interBase_angle": 28.249, "planarity": 0.399, "simple_Shear": -3.021, "simple_Stretch": 2.099, "simple_Buckle": -17.716, "simple_Propeller": 22.003, "bp_simpleParams": [ -3.021, 2.099, -0.549, -17.716, 22.003, -55.614 ], "bp_params": [ -3.574, 0.871, -0.549, -24.420, 14.201, -54.909 ], "frame": { "rmsd": null, "origin": [ 176.310, 132.290, 106.536 ], "x_axis": [ 0.209, 0.978, -0.011 ], "y_axis": [ -0.973, 0.206, -0.105 ], "z_axis": [ -0.101, 0.033, 0.994 ], "quaternion": [ 0.776, -0.044, -0.029, 0.628 ] } }, { "index": 1231, "nt1": "///B/72", "nt2": "///B/101", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM-W", "intra_chain": true, "chi1": -169.590, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 29.721, "chi2": -158.920, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 73.155, "C1C1_dist": 9.492, "N1N9_dist": 7.835, "C6C8_dist": 8.354, "CNNC_torsion": -50.183, "hbonds_num": 1, "hbonds_desc": "O4(carbonyl)-N3(imino)[3.18]", "interBase_angle": 34.963, "planarity": 0.545, "simple_Shear": -4.938, "simple_Stretch": -0.020, "simple_Buckle": -26.075, "simple_Propeller": 23.291, "bp_simpleParams": [ -4.938, -0.020, 1.911, -26.075, 23.291, -18.483 ], "bp_params": [ -4.194, -2.607, 1.911, -34.427, 6.094, -17.695 ], "frame": { "rmsd": null, "origin": [ 175.538, 133.092, 105.282 ], "x_axis": [ 0.509, 0.861, 0.027 ], "y_axis": [ -0.859, 0.509, -0.045 ], "z_axis": [ -0.052, -0.001, 0.999 ], "quaternion": [ 0.868, -0.013, -0.023, 0.495 ] } }, { "index": 1232, "nt1": "///B/73", "nt2": "///B/99", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -173.956, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 24.901, "chi2": -174.891, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 17.443, "C1C1_dist": 14.272, "N1N9_dist": 11.533, "C6C8_dist": 10.761, "CNNC_torsion": 34.005, "hbonds_num": 1, "hbonds_desc": "O6(carbonyl)-N6(amino)[2.54]", "interBase_angle": 28.093, "planarity": 0.341, "simple_Shear": 0.718, "simple_Stretch": 2.669, "simple_Buckle": -8.818, "simple_Propeller": 26.673, "bp_simpleParams": [ 0.718, 2.669, 0.566, -8.818, 26.673, -67.322 ], "bp_params": [ 0.947, 2.597, 0.566, -6.341, 27.368, -68.773 ], "frame": { "rmsd": null, "origin": [ 178.034, 132.390, 109.720 ], "x_axis": [ -0.538, 0.832, -0.137 ], "y_axis": [ -0.831, -0.550, -0.077 ], "z_axis": [ -0.140, 0.073, 0.988 ], "quaternion": [ 0.474, -0.079, -0.001, 0.877 ] } }, { "index": 1233, "nt1": "///B/74", "nt2": "///B/98", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": -169.754, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 40.851, "chi2": -179.953, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 1.665, "C1C1_dist": 13.193, "N1N9_dist": 10.655, "C6C8_dist": 9.973, "CNNC_torsion": -162.724, "hbonds_num": 2, "hbonds_desc": "N1(imino)-O6(carbonyl)[2.93],N2(amino)-O6(carbonyl)[2.45]", "interBase_angle": 19.430, "planarity": 0.261, "simple_Shear": 3.690, "simple_Stretch": 2.671, "simple_Buckle": -0.055, "simple_Propeller": 19.430, "bp_simpleParams": [ 3.690, 2.671, 0.325, -0.055, 19.430, -67.511 ], "bp_params": [ 4.502, 0.692, 0.325, 8.820, 17.313, -67.963 ], "frame": { "rmsd": null, "origin": [ 178.706, 134.509, 112.738 ], "x_axis": [ -0.962, 0.225, -0.154 ], "y_axis": [ -0.236, -0.970, 0.060 ], "z_axis": [ -0.136, 0.094, 0.986 ], "quaternion": [ 0.116, -0.073, 0.039, 0.990 ] } }, { "index": 1234, "nt1": "///B/75", "nt2": "///B/97", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "intra_chain": true, "chi1": 174.837, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 37.267, "chi2": 158.650, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 23.933, "C1C1_dist": 9.090, "N1N9_dist": 6.731, "C6C8_dist": 6.001, "CNNC_torsion": -172.624, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N6(amino)[2.89],N3(imino)-N7[2.86]", "interBase_angle": 5.558, "planarity": 0.081, "simple_Shear": 5.474, "simple_Stretch": 1.593, "simple_Buckle": 4.171, "simple_Propeller": 3.674, "bp_simpleParams": [ 5.474, 1.593, 0.127, 4.171, 3.674, -89.856 ], "bp_params": [ 4.639, -3.313, 0.127, 5.467, -1.003, -89.792 ], "frame": { "rmsd": null, "origin": [ 177.990, 137.464, 115.890 ], "x_axis": [ -0.764, -0.639, -0.088 ], "y_axis": [ 0.606, -0.758, 0.241 ], "z_axis": [ -0.221, 0.131, 0.966 ], "quaternion": [ -0.333, -0.083, 0.100, 0.934 ] } }, { "index": 1235, "nt1": "///B/76", "nt2": "///B/96", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "intra_chain": true, "chi1": -177.794, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 10.177, "chi2": 178.845, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 93.835, "C1C1_dist": 9.915, "N1N9_dist": 8.651, "C6C8_dist": 9.108, "CNNC_torsion": -43.130, "hbonds_num": 3, "hbonds_desc": "N7-N2(amino)[2.76],N6(amino)-O2'(hydroxyl)[3.11],N6(amino)-N3[2.83]", "interBase_angle": 0.899, "planarity": 0.062, "simple_Shear": -7.209, "simple_Stretch": 2.409, "simple_Buckle": -0.672, "simple_Propeller": 0.597, "bp_simpleParams": [ -7.209, 2.409, 0.317, -0.672, 0.597, -4.922 ], "bp_params": [ -6.669, -3.647, 0.317, -0.895, -0.087, -4.922 ], "frame": { "rmsd": null, "origin": [ 172.905, 137.091, 118.202 ], "x_axis": [ -0.904, -0.409, -0.125 ], "y_axis": [ 0.385, -0.905, 0.178 ], "z_axis": [ -0.187, 0.113, 0.976 ], "quaternion": [ -0.204, -0.080, 0.075, 0.973 ] } }, { "index": 1236, "nt1": "///B/77", "nt2": "///B/95", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -179.048, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 44.083, "chi2": -175.587, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 46.940, "C1C1_dist": 10.683, "N1N9_dist": 8.617, "C6C8_dist": 9.215, "CNNC_torsion": -8.515, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N3(imino)[2.79],O6(carbonyl)*O4(carbonyl)[2.17],N2(amino)-O2(carbonyl)[3.05]", "unusual_base2base_hbonds": 1, "interBase_angle": 1.947, "planarity": 0.154, "simple_Shear": -0.495, "simple_Stretch": -0.702, "simple_Buckle": -1.678, "simple_Propeller": 0.987, "bp_simpleParams": [ -0.495, -0.702, 0.608, -1.678, 0.987, -15.483 ], "bp_params": [ -0.462, -0.725, 0.608, -1.722, 0.908, -15.481 ], "frame": { "rmsd": null, "origin": [ 171.781, 138.461, 121.289 ], "x_axis": [ -0.075, -0.997, 0.036 ], "y_axis": [ 0.986, -0.068, 0.155 ], "z_axis": [ -0.152, 0.047, 0.987 ], "quaternion": [ 0.679, 0.040, -0.069, -0.730 ] } }, { "index": 1237, "nt1": "///B/78", "nt2": "///B/94", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -172.809, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 68.160, "chi2": -179.971, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 36.703, "C1C1_dist": 10.399, "N1N9_dist": 8.686, "C6C8_dist": 9.508, "CNNC_torsion": -16.226, "hbonds_num": 2, "hbonds_desc": "O2(carbonyl)-N1(imino)[2.77],N3(imino)-O6(carbonyl)[2.79]", "interBase_angle": 2.331, "planarity": 0.213, "simple_Shear": 3.053, "simple_Stretch": -0.065, "simple_Buckle": 0.623, "simple_Propeller": -2.246, "bp_simpleParams": [ 3.053, -0.065, 1.027, 0.623, -2.246, -3.380 ], "bp_params": [ 2.892, -0.983, 1.027, -0.083, -2.329, -3.380 ], "frame": { "rmsd": null, "origin": [ 169.108, 138.457, 124.224 ], "x_axis": [ 0.577, -0.813, 0.077 ], "y_axis": [ 0.812, 0.581, 0.046 ], "z_axis": [ -0.082, 0.036, 0.996 ], "quaternion": [ 0.888, 0.003, -0.045, -0.457 ] } }, { "index": 1238, "nt1": "///B/79", "nt2": "///B/93", "bp": "C-U", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -160.228, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 37.275, "chi2": -165.971, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 39.262, "C1C1_dist": 11.042, "N1N9_dist": 8.720, "C6C8_dist": 9.068, "CNNC_torsion": -4.049, "hbonds_num": 1, "hbonds_desc": "N4(amino)-O4(carbonyl)[2.28]", "interBase_angle": 14.394, "planarity": 0.167, "simple_Shear": -0.168, "simple_Stretch": -0.676, "simple_Buckle": 6.699, "simple_Propeller": -12.740, "bp_simpleParams": [ -0.168, -0.676, -0.599, 6.699, -12.740, -31.060 ], "bp_params": [ -0.154, -0.680, -0.599, 6.938, -12.611, -31.186 ], "frame": { "rmsd": null, "origin": [ 164.859, 139.205, 126.666 ], "x_axis": [ 0.798, -0.579, 0.169 ], "y_axis": [ 0.577, 0.814, 0.068 ], "z_axis": [ -0.177, 0.044, 0.983 ], "quaternion": [ 0.948, 0.006, -0.091, -0.305 ] } }, { "index": 1239, "nt1": "///B/80", "nt2": "///B/92", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -163.753, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.550, "chi2": -167.425, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.511, "C1C1_dist": 10.556, "N1N9_dist": 8.846, "C6C8_dist": 9.826, "CNNC_torsion": 6.495, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.84],N2(amino)-O2(carbonyl)[2.69]", "interBase_angle": 9.012, "planarity": 0.116, "simple_Shear": -0.236, "simple_Stretch": -0.190, "simple_Buckle": -0.537, "simple_Propeller": 8.996, "bp_simpleParams": [ -0.236, -0.190, -0.033, -0.537, 8.996, 1.744 ], "bp_params": [ -0.232, -0.195, -0.033, -0.711, 8.983, 1.750 ], "frame": { "rmsd": null, "origin": [ 166.161, 136.987, 130.443 ], "x_axis": [ 0.999, -0.022, -0.029 ], "y_axis": [ 0.021, 1.000, -0.019 ], "z_axis": [ 0.029, 0.019, 0.999 ], "quaternion": [ 1.000, -0.009, 0.014, -0.011 ] } }, { "index": 1240, "nt1": "///B/81", "nt2": "///B/91", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 178.855, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.989, "chi2": -164.992, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.012, "C1C1_dist": 10.630, "N1N9_dist": 8.856, "C6C8_dist": 9.778, "CNNC_torsion": 7.877, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.88],N2(amino)-O2(carbonyl)[2.73]", "interBase_angle": 3.792, "planarity": 0.169, "simple_Shear": -0.212, "simple_Stretch": -0.271, "simple_Buckle": -3.791, "simple_Propeller": 0.090, "bp_simpleParams": [ -0.212, -0.271, -0.858, -3.791, 0.090, 0.043 ], "bp_params": [ -0.208, -0.275, -0.858, -3.792, 0.029, 0.043 ], "frame": { "rmsd": null, "origin": [ 167.581, 135.116, 133.583 ], "x_axis": [ 0.856, 0.494, -0.152 ], "y_axis": [ -0.473, 0.868, 0.152 ], "z_axis": [ 0.207, -0.059, 0.977 ], "quaternion": [ 0.962, 0.055, 0.093, 0.251 ] } }, { "index": 1241, "nt1": "///B/82", "nt2": "///B/90", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": -167.352, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 53.805, "chi2": -175.412, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 53.229, "C1C1_dist": 10.649, "N1N9_dist": 8.895, "C6C8_dist": 9.820, "CNNC_torsion": 8.130, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.88],N1(imino)-N3[2.86],N2(amino)-O2(carbonyl)[2.74]", "interBase_angle": 7.193, "planarity": 0.111, "simple_Shear": -0.164, "simple_Stretch": -0.200, "simple_Buckle": -4.317, "simple_Propeller": 5.754, "bp_simpleParams": [ -0.164, -0.200, -0.433, -4.317, 5.754, -0.708 ], "bp_params": [ -0.161, -0.202, -0.433, -4.391, 5.698, -0.709 ], "frame": { "rmsd": null, "origin": [ 169.826, 133.729, 136.387 ], "x_axis": [ 0.447, 0.887, -0.111 ], "y_axis": [ -0.859, 0.461, 0.222 ], "z_axis": [ 0.248, -0.004, 0.969 ], "quaternion": [ 0.848, 0.067, 0.106, 0.515 ] } }, { "index": 1242, "nt1": "///B/83", "nt2": "///B/89", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 169.412, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 50.386, "chi2": -167.018, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 55.181, "C1C1_dist": 10.699, "N1N9_dist": 8.917, "C6C8_dist": 9.833, "CNNC_torsion": 8.401, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.90],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.76]", "interBase_angle": 5.971, "planarity": 0.121, "simple_Shear": -0.236, "simple_Stretch": -0.200, "simple_Buckle": 0.387, "simple_Propeller": 5.959, "bp_simpleParams": [ -0.236, -0.200, -0.451, 0.387, 5.959, -0.860 ], "bp_params": [ -0.232, -0.204, -0.451, 0.277, 5.965, -0.861 ], "frame": { "rmsd": null, "origin": [ 172.532, 133.951, 138.942 ], "x_axis": [ -0.044, 0.999, 0.004 ], "y_axis": [ -0.967, -0.044, 0.252 ], "z_axis": [ 0.252, 0.007, 0.968 ], "quaternion": [ 0.685, 0.089, 0.090, 0.717 ] } }, { "index": 1243, "nt1": "///B/84", "nt2": "///B/88", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "intra_chain": true, "chi1": 160.339, "conf1": "anti", "pucker1": "~C3'-endo", "lambda1": 52.795, "chi2": -162.657, "conf2": "anti", "pucker2": "~C3'-endo", "lambda2": 54.274, "C1C1_dist": 10.598, "N1N9_dist": 8.845, "C6C8_dist": 9.772, "CNNC_torsion": 12.199, "hbonds_num": 3, "hbonds_desc": "O6(carbonyl)-N4(amino)[2.91],N1(imino)-N3[2.87],N2(amino)-O2(carbonyl)[2.72]", "interBase_angle": 10.289, "planarity": 0.231, "simple_Shear": -0.146, "simple_Stretch": -0.248, "simple_Buckle": 7.612, "simple_Propeller": 6.923, "bp_simpleParams": [ -0.146, -0.248, -0.668, 7.612, 6.923, -0.401 ], "bp_params": [ -0.145, -0.249, -0.668, 7.558, 6.982, -0.401 ], "frame": { "rmsd": null, "origin": [ 174.775, 134.755, 141.473 ], "x_axis": [ -0.470, 0.878, 0.084 ], "y_axis": [ -0.850, -0.477, 0.223 ], "z_axis": [ 0.236, 0.033, 0.971 ], "quaternion": [ 0.506, 0.094, 0.075, 0.854 ] } } ], "num_multiplets": 118, "multiplets": [ { "index": 1, "num_nts": 3, "nts_short": "GCA", "nts_long": "///A/35,///A/492,///A/496", "planarity": 0.341 }, { "index": 2, "num_nts": 3, "nts_short": "CGA", "nts_long": "///A/39,///A/487,///A/659", "planarity": 0.393 }, { "index": 3, "num_nts": 3, "nts_short": "AUC", "nts_long": "///A/44,///A/481,///A/482", "planarity": 0.288 }, { "index": 4, "num_nts": 3, "nts_short": "GAC", "nts_long": "///A/45,///A/183,///A/480", "planarity": 0.318 }, { "index": 5, "num_nts": 3, "nts_short": "GAU", "nts_long": "///A/51,///A/117,///A/119", "planarity": 0.517 }, { "index": 6, "num_nts": 3, "nts_short": "GCA", "nts_long": "///A/55,///A/114,///A/126", "planarity": 0.258 }, { "index": 7, "num_nts": 3, "nts_short": "GCA", "nts_long": "///A/58,///A/69,///A/73", "planarity": 0.181 }, { "index": 8, "num_nts": 3, "nts_short": "GCG", "nts_long": "///A/60,///A/66,///A/88", "planarity": 0.386 }, { "index": 9, "num_nts": 3, "nts_short": "AUC", "nts_long": "///A/65,///A/89,///A/503", "planarity": 0.586 }, { "index": 10, "num_nts": 3, "nts_short": "GCA", "nts_long": "///A/80,///A/105,///A/337", "planarity": 0.199 }, { "index": 11, "num_nts": 3, "nts_short": "AGU", "nts_long": "///A/193,///A/208,///A/209", "planarity": 0.233 }, { "index": 12, "num_nts": 3, "nts_short": "AAU", "nts_long": "///A/229,///A/456,///A/465", "planarity": 0.202 }, { "index": 13, "num_nts": 3, "nts_short": "AGC", "nts_long": "///A/230,///A/457,///A/464", "planarity": 0.183 }, { "index": 14, "num_nts": 3, "nts_short": "AUA", "nts_long": "///A/236,///A/266,///A/476", "planarity": 0.396 }, { "index": 15, "num_nts": 3, "nts_short": "GUA", "nts_long": "///A/245,///A/246,///A/258", "planarity": 0.296 }, { "index": 16, "num_nts": 3, "nts_short": "UAU", "nts_long": "///A/299,///A/302,///A/416", "planarity": 0.389 }, { "index": 17, "num_nts": 3, "nts_short": "GGC", "nts_long": "///A/304,///A/411,///A/414", "planarity": 0.695 }, { "index": 18, "num_nts": 3, "nts_short": "CGA", "nts_long": "///A/306,///A/410,///A/412", "planarity": 0.709 }, { "index": 19, "num_nts": 3, "nts_short": "AAU", "nts_long": "///A/318,///A/325,///A/402", "planarity": 0.337 }, { "index": 20, "num_nts": 3, "nts_short": "GAC", "nts_long": "///A/319,///A/326,///A/401", "planarity": 0.319 }, { "index": 21, "num_nts": 3, "nts_short": "UGU", "nts_long": "///A/320,///A/327,///A/400", "planarity": 0.197 }, { "index": 22, "num_nts": 3, "nts_short": "AGG", "nts_long": "///A/342,///A/368,///A/382", "planarity": 0.435 }, { "index": 23, "num_nts": 3, "nts_short": "AUU", "nts_long": "///A/428,///A/434,///A/440", "planarity": 0.824 }, { "index": 24, "num_nts": 3, "nts_short": "ACG", "nts_long": "///A/490,///A/1241,///A/1285", "planarity": 0.384 }, { "index": 25, "num_nts": 3, "nts_short": "UGC", "nts_long": "///A/495,///A/626,///A/1298", "planarity": 0.583 }, { "index": 26, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/499,///A/504,///A/518", "planarity": 0.433 }, { "index": 27, "num_nts": 3, "nts_short": "GUA", "nts_long": "///A/505,///A/506,///A/517", "planarity": 0.401 }, { "index": 28, "num_nts": 3, "nts_short": "GUA", "nts_long": "///A/512,///A/730,///A/841", "planarity": 0.256 }, { "index": 29, "num_nts": 3, "nts_short": "CAA", "nts_long": "///A/529,///A/530,///A/543", "planarity": 0.421 }, { "index": 30, "num_nts": 3, "nts_short": "ACG", "nts_long": "///A/572,///A/2072,///A/2654", "planarity": 0.575 }, { "index": 31, "num_nts": 3, "nts_short": "AAU", "nts_long": "///A/578,///A/2049,///A/2063", "planarity": 0.619 }, { "index": 32, "num_nts": 3, "nts_short": "CGA", "nts_long": "///A/588,///A/595,///A/1260", "planarity": 0.385 }, { "index": 33, "num_nts": 3, "nts_short": "UUA", "nts_long": "///A/606,///A/2057,///A/2062", "planarity": 0.290 }, { "index": 34, "num_nts": 3, "nts_short": "ACG", "nts_long": "///A/630,///A/718,///A/856", "planarity": 0.473 }, { "index": 35, "num_nts": 3, "nts_short": "UGG", "nts_long": "///A/650,///A/666,///A/668", "planarity": 0.865 }, { "index": 36, "num_nts": 3, "nts_short": "AUA", "nts_long": "///A/689,///A/2377,///A/2398", "planarity": 0.366 }, { "index": 37, "num_nts": 3, "nts_short": "AUC", "nts_long": "///A/722,///A/850,///A/2472", "planarity": 0.239 }, { "index": 38, "num_nts": 3, "nts_short": "GGC", "nts_long": "///A/731,///A/822,///A/838", "planarity": 0.355 }, { "index": 39, "num_nts": 3, "nts_short": "GCC", "nts_long": "///A/776,///A/1803,///A/1819", "planarity": 0.455 }, { "index": 40, "num_nts": 3, "nts_short": "CGA", "nts_long": "///A/785,///A/805,///A/2010", "planarity": 0.307 }, { "index": 41, "num_nts": 3, "nts_short": "ACG", "nts_long": "///A/786,///A/787,///A/804", "planarity": 0.357 }, { "index": 42, "num_nts": 3, "nts_short": "CAG", "nts_long": "///A/791,///A/796,///A/800", "planarity": 0.403 }, { "index": 43, "num_nts": 3, "nts_short": "UAA", "nts_long": "///A/794,///A/1305,///A/2043", "planarity": 0.638 }, { "index": 44, "num_nts": 3, "nts_short": "AUA", "nts_long": "///A/811,///A/1804,///A/1818", "planarity": 0.341 }, { "index": 45, "num_nts": 3, "nts_short": "AGC", "nts_long": "///A/821,///A/824,///A/834", "planarity": 0.508 }, { "index": 46, "num_nts": 3, "nts_short": "AGC", "nts_long": "///A/828,///A/1805,///A/1817", "planarity": 0.243 }, { "index": 47, "num_nts": 3, "nts_short": "GCA", "nts_long": "///A/871,///A/880,///A/2387", "planarity": 0.916 }, { "index": 48, "num_nts": 3, "nts_short": "UAU", "nts_long": "///A/892,///A/894,///A/979", "planarity": 0.532 }, { "index": 49, "num_nts": 3, "nts_short": "UAA", "nts_long": "///A/907,///A/964,///A/2297", "planarity": 1.068 }, { "index": 50, "num_nts": 3, "nts_short": "CUA", "nts_long": "///A/912,///A/915,///A/956", "planarity": 0.272 }, { "index": 51, "num_nts": 3, "nts_short": "AUG", "nts_long": "///A/993,///A/1016,///A/1030", "planarity": 0.311 }, { "index": 52, "num_nts": 3, "nts_short": "GUA", "nts_long": "///A/1000,///A/1009,///A/2303", "planarity": 0.328 }, { "index": 53, "num_nts": 3, "nts_short": "GAC", "nts_long": "///A/1048,///A/1055,///A/1199", "planarity": 0.361 }, { "index": 54, "num_nts": 3, "nts_short": "GAC", "nts_long": "///A/1049,///A/1056,///A/1198", "planarity": 0.370 }, { "index": 55, "num_nts": 3, "nts_short": "CCG", "nts_long": "///A/1051,///A/1181,///A/1184", "planarity": 0.281 }, { "index": 56, "num_nts": 3, "nts_short": "GGA", "nts_long": "///A/1071,///A/1185,///A/1189", "planarity": 0.351 }, { "index": 57, "num_nts": 3, "nts_short": "UAC", "nts_long": "///A/1079,///A/2779,///A/2781", "planarity": 0.772 }, { "index": 58, "num_nts": 3, "nts_short": "GCU", "nts_long": "///A/1309,///A/1364,///A/2040", "planarity": 0.426 }, { "index": 59, "num_nts": 3, "nts_short": "CGA", "nts_long": "///A/1353,///A/1377,///A/1432", "planarity": 0.132 }, { "index": 60, "num_nts": 3, "nts_short": "CGG", "nts_long": "///A/1354,///A/1376,///A/1431", "planarity": 0.253 }, { "index": 61, "num_nts": 3, "nts_short": "GAC", "nts_long": "///A/1358,///A/1361,///A/1372", "planarity": 0.482 }, { "index": 62, "num_nts": 3, "nts_short": "GGC", "nts_long": "///A/1359,///A/1362,///A/1370", "planarity": 0.480 }, { "index": 63, "num_nts": 3, "nts_short": "AUA", "nts_long": "///A/1398,///A/1411,///A/2241", "planarity": 0.444 }, { "index": 64, "num_nts": 3, "nts_short": "AGA", "nts_long": "///A/1456,///A/1460,///A/1631", "planarity": 0.533 }, { "index": 65, "num_nts": 3, "nts_short": "ACU", "nts_long": "///A/1477,///A/1607,///A/1610", "planarity": 0.355 }, { "index": 66, "num_nts": 3, "nts_short": "AUA", "nts_long": "///A/1675,///A/1681,///A/1789", "planarity": 0.528 }, { "index": 67, "num_nts": 3, "nts_short": "AGC", "nts_long": "///A/1709,///A/2021,///A/2025", "planarity": 0.746 }, { "index": 68, "num_nts": 3, "nts_short": "GAU", "nts_long": "///A/1712,///A/1714,///A/2022", "planarity": 0.537 }, { "index": 69, "num_nts": 3, "nts_short": "ACU", "nts_long": "///A/1713,///A/1715,///A/2020", "planarity": 0.990 }, { "index": 70, "num_nts": 3, "nts_short": "GAC", "nts_long": "///A/1719,///A/1722,///A/2019", "planarity": 0.759 }, { "index": 71, "num_nts": 3, "nts_short": "UAG", "nts_long": "///A/1754,///A/1778,///A/2884", "planarity": 0.332 }, { "index": 72, "num_nts": 3, "nts_short": "CAU", "nts_long": "///A/1783,///A/2722,///A/2745", "planarity": 0.293 }, { "index": 73, "num_nts": 3, "nts_short": "AGC", "nts_long": "///A/1784,///A/2723,///A/2744", "planarity": 0.357 }, { "index": 74, "num_nts": 3, "nts_short": "GCC", "nts_long": "///A/1801,///A/2005,///A/2008", "planarity": 0.716 }, { "index": 75, "num_nts": 3, "nts_short": "CCU", "nts_long": "///A/1867,///A/1872,///A/1927", "planarity": 0.865 }, { "index": 76, "num_nts": 3, "nts_short": "CGA", "nts_long": "///A/2076,///A/2650,///A/2848", "planarity": 0.336 }, { "index": 77, "num_nts": 3, "nts_short": "AAU", "nts_long": "///A/2083,///A/2643,///A/2644", "planarity": 0.242 }, { "index": 78, "num_nts": 3, "nts_short": "UAA", "nts_long": "///A/2103,///A/2464,///A/2627", "planarity": 0.712 }, { "index": 79, "num_nts": 3, "nts_short": "AUU", "nts_long": "///A/2124,///A/2223,///A/2224", "planarity": 0.992 }, { "index": 80, "num_nts": 3, "nts_short": "UGA", "nts_long": "///A/2147,///A/2173,///A/2176", "planarity": 0.664 }, { "index": 81, "num_nts": 3, "nts_short": "GGC", "nts_long": "///A/2161,///A/2168,///A/2181", "planarity": 0.870 }, { "index": 82, "num_nts": 3, "nts_short": "UGA", "nts_long": "///A/2331,///A/2332,///A/2343", "planarity": 0.965 }, { "index": 83, "num_nts": 3, "nts_short": "CAG", "nts_long": "///A/2549,///A/2571,///A/2574", "planarity": 0.398 }, { "index": 84, "num_nts": 3, "nts_short": "ACG", "nts_long": "///A/2560,///A/2687,///A/2692", "planarity": 0.584 }, { "index": 85, "num_nts": 3, "nts_short": "CGU", "nts_long": "///A/2655,///A/2806,///A/2808", "planarity": 0.523 }, { "index": 86, "num_nts": 3, "nts_short": "CGG", "nts_long": "///A/2709,///A/2711,///A/2756", "planarity": 0.888 }, { "index": 87, "num_nts": 3, "nts_short": "CUA", "nts_long": "///A/2710,///A/2713,///A/2754", "planarity": 0.350 }, { "index": 88, "num_nts": 3, "nts_short": "UUA", "nts_long": "///A/2775,///A/2785,///A/2787", "planarity": 0.257 }, { "index": 89, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/2873,///A/2875,///A/2893", "planarity": 0.422 }, { "index": 90, "num_nts": 3, "nts_short": "GAG", "nts_long": "///A/2874,///A/2876,///A/2891", "planarity": 0.495 }, { "index": 91, "num_nts": 3, "nts_short": "CGC", "nts_long": "///B/15,///B/65,///B/106", "planarity": 0.365 }, { "index": 92, "num_nts": 3, "nts_short": "CUG", "nts_long": "///B/26,///B/54,///B/57", "planarity": 0.633 }, { "index": 93, "num_nts": 3, "nts_short": "AUA", "nts_long": "///B/27,///B/53,///B/56", "planarity": 0.626 }, { "index": 94, "num_nts": 3, "nts_short": "CUA", "nts_long": "///B/28,///B/53,///B/55", "planarity": 0.408 }, { "index": 95, "num_nts": 3, "nts_short": "CGA", "nts_long": "///B/29,///B/49,///B/51", "planarity": 0.480 }, { "index": 96, "num_nts": 4, "nts_short": "GGCA", "nts_long": "///A/83,///A/85,///A/97,///A/102", "planarity": 1.243 }, { "index": 97, "num_nts": 4, "nts_short": "AUCG", "nts_long": "///A/162,///A/167,///A/2236,///A/2246", "planarity": 0.582 }, { "index": 98, "num_nts": 4, "nts_short": "AUGC", "nts_long": "///A/274,///A/298,///A/303,///A/415", "planarity": 0.660 }, { "index": 99, "num_nts": 4, "nts_short": "GAGC", "nts_long": "///A/510,///A/513,///A/729,///A/842", "planarity": 0.258 }, { "index": 100, "num_nts": 4, "nts_short": "UAUA", "nts_long": "///A/522,///A/526,///A/545,///A/549", "planarity": 0.460 }, { "index": 101, "num_nts": 4, "nts_short": "GCGA", "nts_long": "///A/629,///A/719,///A/855,///A/1294", "planarity": 0.901 }, { "index": 102, "num_nts": 4, "nts_short": "AAGC", "nts_long": "///A/723,///A/849,///A/2098,///A/2471", "planarity": 0.446 }, { "index": 103, "num_nts": 4, "nts_short": "GACC", "nts_long": "///A/911,///A/913,///A/914,///A/959", "planarity": 0.602 }, { "index": 104, "num_nts": 4, "nts_short": "GACU", "nts_long": "///A/911,///A/913,///A/914,///A/960", "planarity": 1.260 }, { "index": 105, "num_nts": 4, "nts_short": "GCUA", "nts_long": "///A/1022,///A/1033,///A/1045,///A/1201", "planarity": 0.636 }, { "index": 106, "num_nts": 4, "nts_short": "GCAG", "nts_long": "///A/1023,///A/1032,///A/1047,///A/1200", "planarity": 0.602 }, { "index": 107, "num_nts": 4, "nts_short": "GUAU", "nts_long": "///A/1306,///A/1307,///A/2042,///A/2642", "planarity": 0.266 }, { "index": 108, "num_nts": 4, "nts_short": "CGCA", "nts_long": "///A/1390,///A/1419,///A/1474,///A/1618", "planarity": 1.271 }, { "index": 109, "num_nts": 4, "nts_short": "GUAC", "nts_long": "///A/1482,///A/1522,///A/1562,///A/1604", "planarity": 0.561 }, { "index": 110, "num_nts": 4, "nts_short": "GCGA", "nts_long": "///A/1492,///A/1511,///A/1574,///A/1593", "planarity": 0.467 }, { "index": 111, "num_nts": 4, "nts_short": "CGGA", "nts_long": "///A/1753,///A/1779,///A/2882,///A/2885", "planarity": 0.263 }, { "index": 112, "num_nts": 4, "nts_short": "ACGG", "nts_long": "///A/2327,///A/2346,///A/2347,///A/2350", "planarity": 1.025 }, { "index": 113, "num_nts": 4, "nts_short": "GUUC", "nts_long": "///A/2426,///A/2427,///A/2448,///A/2449", "planarity": 1.390 }, { "index": 114, "num_nts": 4, "nts_short": "ACGA", "nts_long": "///A/2560,///A/2687,///A/2688,///A/2691", "planarity": 0.958 }, { "index": 115, "num_nts": 4, "nts_short": "GCAG", "nts_long": "///A/2660,///A/2816,///A/2835,///A/2915", "planarity": 0.655 }, { "index": 116, "num_nts": 4, "nts_short": "CGGA", "nts_long": "///A/2841,///A/2855,///A/2859,///A/2908", "planarity": 0.734 }, { "index": 117, "num_nts": 5, "nts_short": "CGUCU", "nts_long": "///A/2290,///A/2308,///A/2355,///A/2414,///A/2416", "planarity": 1.367 }, { "index": 118, "num_nts": 5, "nts_short": "CCUGC", "nts_long": "///B/34,///B/36,///B/38,///B/42,///B/45", "planarity": 1.920 } ], "num_helices": 88, "helices": [ { "index": 1, "num_stems": 1, "strand1": "UUAAGUU", "strand2": "AAUUCAA", "bp_type": "||||||.", "helix_form": ".AAAAx", "helical_rise": 3.091, "helical_rise_std": 0.136, "helical_radius": 8.699, "helical_radius_std": 0.797, "helical_axis": [ 0.466, 0.871, -0.156 ], "point1": [ 135.736, 101.416, 202.023 ], "point2": [ 144.341, 117.498, 199.134 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///A/3", "nt2": "///A/2924", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.065, -0.275, -0.985, -6.624, -9.239, 4.109 ], "step_params": [ -1.020, -0.721, 3.746, -5.634, -1.905, 38.329 ], "heli_params": [ -0.813, 0.728, 3.881, -2.881, 8.519, 38.771 ], "bp2_params": [ -0.116, -0.192, -0.559, -7.555, -6.263, 0.706 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.746, "simple_Twist": 38.408, "simple_hRise": 3.881, "simple_hTwist": 38.849 }, { "index": 2, "nt1": "///A/4", "nt2": "///A/2923", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.116, -0.192, -0.559, -7.555, -6.263, 0.706 ], "step_params": [ 0.202, -1.502, 3.356, -4.141, 4.262, 31.801 ], "heli_params": [ -3.446, -1.089, 3.084, 7.694, 7.475, 32.337 ], "bp2_params": [ -0.029, -0.121, 0.065, -8.995, 2.910, 3.224 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.356, "simple_Twist": 31.915, "simple_hRise": 3.085, "simple_hTwist": 32.449 }, { "index": 3, "nt1": "///A/5", "nt2": "///A/2922", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.029, -0.121, 0.065, -8.995, 2.910, 3.224 ], "step_params": [ -0.101, -1.326, 3.097, -2.442, 4.796, 32.523 ], "heli_params": [ -3.088, -0.204, 2.878, 8.490, 4.323, 32.954 ], "bp2_params": [ 0.138, -0.118, 0.460, -4.301, 3.587, -0.693 ], "groove_widths": [ 17.418, null, 15.140, null ], "simple_Rise": 3.097, "simple_Twist": 31.841, "simple_hRise": 2.872, "simple_hTwist": 32.281 }, { "index": 4, "nt1": "///A/6", "nt2": "///A/2921", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.138, -0.118, 0.460, -4.301, 3.587, -0.693 ], "step_params": [ 0.828, -1.898, 2.994, 0.575, 2.983, 28.036 ], "heli_params": [ -4.514, -1.580, 2.797, 6.135, -1.182, 28.197 ], "bp2_params": [ -0.167, -0.185, 0.580, 1.146, 3.457, 1.176 ], "groove_widths": [ 17.339, null, 15.526, null ], "simple_Rise": 2.994, "simple_Twist": 29.638, "simple_hRise": 2.809, "simple_hTwist": 29.790 }, { "index": 5, "nt1": "///A/7", "nt2": "///A/2920", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.167, -0.185, 0.580, 1.146, 3.457, 1.176 ], "step_params": [ -0.135, -1.859, 3.258, 0.010, 0.271, 36.131 ], "heli_params": [ -3.035, 0.219, 3.244, 0.437, -0.016, 36.132 ], "bp2_params": [ -0.101, -0.177, 0.698, -0.454, 1.571, -5.410 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.258, "simple_Twist": 35.572, "simple_hRise": 3.244, "simple_hTwist": 35.573 }, { "index": 6, "nt1": "///A/8", "nt2": "///A/2919", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.101, -0.177, 0.698, -0.454, 1.571, -5.410 ], "step_params": [ -2.260, -2.218, 3.175, -1.235, 4.474, 78.513 ], "heli_params": [ -1.868, 1.751, 3.095, 3.532, 0.975, 78.627 ], "bp2_params": [ 4.246, -2.510, 0.909, -0.004, -4.505, -86.824 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.175, "simple_Twist": 51.348, "simple_hRise": 3.035, "simple_hTwist": 51.544 }, { "index": 7, "nt1": "///A/9", "nt2": "///A/2658", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M" } ] }, { "index": 2, "num_stems": 5, "strand1": "AGGGCGCACGGUGGAUGCCUAGGCACUAGGAG", "strand2": "AUCCGUGUGCCAAAGUCGGAGCCGUGAUCCUC", "bp_type": ".||||||||||.....|||..|||||||||||", "helix_form": "x.AA..AA.A......xAxxx.xA..AA.x.", "helical_rise": 2.857, "helical_rise_std": 1.195, "helical_radius": 9.349, "helical_radius_std": 3.082, "helical_axis": [ 0.114, 0.963, -0.244 ], "point1": [ 135.146, 139.674, 205.593 ], "point2": [ 145.204, 224.713, 184.032 ], "num_pairs": 32, "pairs": [ { "index": 1, "nt1": "///A/14", "nt2": "///A/13", "bp": "A+A", "name": "Platform", "Saenger": "--", "LW": "cHS", "DSSR": "cM+m", "bp1_params": [ -7.094, -0.022, 0.406, 5.812, -29.779, -2.280 ], "step_params": [ 2.015, 1.220, 3.748, 6.468, 13.995, 55.199 ], "heli_params": [ 0.334, -1.671, 4.115, 14.785, -6.833, 57.148 ], "bp2_params": [ -1.048, -0.467, -0.800, -11.402, 1.729, -11.173 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.748, "simple_Twist": -28.382, "simple_hRise": 2.395, "simple_hTwist": -32.223 }, { "index": 2, "nt1": "///A/15", "nt2": "///A/571", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.048, -0.467, -0.800, -11.402, 1.729, -11.173 ], "step_params": [ 0.392, -1.967, 3.500, -3.011, 2.529, 31.251 ], "heli_params": [ -4.115, -1.307, 3.284, 4.671, 5.562, 31.491 ], "bp2_params": [ -0.088, -0.243, -0.885, -7.930, 5.155, -3.104 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.500, "simple_Twist": 26.256, "simple_hRise": 3.235, "simple_hTwist": 26.544 }, { "index": 3, "nt1": "///A/16", "nt2": "///A/570", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.088, -0.243, -0.885, -7.930, 5.155, -3.104 ], "step_params": [ -0.395, -1.847, 3.628, -2.611, 1.242, 31.821 ], "heli_params": [ -3.605, 0.196, 3.575, 2.260, 4.751, 31.949 ], "bp2_params": [ -0.173, -0.193, -0.513, -4.645, 7.124, -1.509 ], "groove_widths": [ 19.473, null, 17.929, null ], "simple_Rise": 3.628, "simple_Twist": 32.096, "simple_hRise": 3.576, "simple_hTwist": 32.222 }, { "index": 4, "nt1": "///A/17", "nt2": "///A/569", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.173, -0.193, -0.513, -4.645, 7.124, -1.509 ], "step_params": [ 0.554, -1.528, 3.221, -0.790, 5.191, 31.399 ], "heli_params": [ -3.683, -1.146, 2.923, 9.509, 1.447, 31.824 ], "bp2_params": [ 0.252, -0.166, -0.061, 3.967, 8.753, -0.857 ], "groove_widths": [ 18.164, 16.261, 13.264, 11.197 ], "simple_Rise": 3.221, "simple_Twist": 29.444, "simple_hRise": 2.900, "simple_hTwist": 29.898 }, { "index": 5, "nt1": "///A/18", "nt2": "///A/568", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.252, -0.166, -0.061, 3.967, 8.753, -0.857 ], "step_params": [ 1.660, -1.044, 2.871, 5.072, 32.228, 35.671 ], "heli_params": [ -3.346, -1.717, 1.655, 43.165, -6.794, 47.979 ], "bp2_params": [ -2.396, -0.364, -0.377, -10.619, -11.662, 2.005 ], "groove_widths": [ 18.072, 16.199, 13.696, 10.004 ], "simple_Rise": 2.871, "simple_Twist": 49.553, "simple_hRise": 2.051, "simple_hTwist": 58.757 }, { "index": 6, "nt1": "///A/19", "nt2": "///A/567", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.396, -0.364, -0.377, -10.619, -11.662, 2.005 ], "step_params": [ -0.899, -0.993, 3.521, -4.412, 0.676, 38.018 ], "heli_params": [ -1.607, 0.768, 3.582, 1.033, 6.744, 38.269 ], "bp2_params": [ 0.165, -0.282, -0.796, -4.448, -3.344, -0.647 ], "groove_widths": [ 17.321, 15.384, 15.044, 12.442 ], "simple_Rise": 3.521, "simple_Twist": 24.046, "simple_hRise": 3.597, "simple_hTwist": 24.451 }, { "index": 7, "nt1": "///A/20", "nt2": "///A/566", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.165, -0.282, -0.796, -4.448, -3.344, -0.647 ], "step_params": [ 0.114, -1.602, 3.456, -2.839, 3.904, 29.529 ], "heli_params": [ -3.932, -0.823, 3.198, 7.596, 5.524, 29.912 ], "bp2_params": [ 0.068, -0.132, -0.225, -4.540, 2.434, 0.970 ], "groove_widths": [ 17.220, 15.804, 17.517, 15.602 ], "simple_Rise": 3.456, "simple_Twist": 30.371, "simple_hRise": 3.206, "simple_hTwist": 30.743 }, { "index": 8, "nt1": "///A/21", "nt2": "///A/565", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.068, -0.132, -0.225, -4.540, 2.434, 0.970 ], "step_params": [ 0.830, -1.396, 3.233, -0.701, 3.199, 34.956 ], "heli_params": [ -2.778, -1.478, 3.080, 5.311, 1.164, 35.104 ], "bp2_params": [ 0.182, -0.106, 0.455, 1.176, 2.552, 0.533 ], "groove_widths": [ 17.720, 16.398, 18.160, 15.340 ], "simple_Rise": 3.233, "simple_Twist": 34.249, "simple_hRise": 3.076, "simple_hTwist": 34.400 }, { "index": 9, "nt1": "///A/22", "nt2": "///A/564", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.182, -0.106, 0.455, 1.176, 2.552, 0.533 ], "step_params": [ -0.006, -2.699, 3.146, 4.326, 20.781, 20.280 ], "heli_params": [ -8.158, 0.598, 0.295, 45.804, -9.536, 29.277 ], "bp2_params": [ -0.209, -0.131, -0.139, -6.442, -5.402, 0.289 ], "groove_widths": [ 17.439, 15.759, 18.603, 15.227 ], "simple_Rise": 3.146, "simple_Twist": 22.274, "simple_hRise": 0.491, "simple_hTwist": 30.676 }, { "index": 10, "nt1": "///A/23", "nt2": "///A/563", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.209, -0.131, -0.139, -6.442, -5.402, 0.289 ], "step_params": [ -0.627, -1.745, 3.486, -3.857, 2.611, 33.041 ], "heli_params": [ -3.497, 0.416, 3.392, 4.563, 6.739, 33.359 ], "bp2_params": [ -0.182, -0.148, -0.586, -8.506, -0.178, 1.972 ], "groove_widths": [ 16.962, 15.133, 16.229, 13.843 ], "simple_Rise": 3.486, "simple_Twist": 32.912, "simple_hRise": 3.391, "simple_hTwist": 33.231 }, { "index": 11, "nt1": "///A/24", "nt2": "///A/562", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.182, -0.148, -0.586, -8.506, -0.178, 1.972 ], "step_params": [ -2.410, -1.591, 3.857, 2.571, 7.094, 51.240 ], "heli_params": [ -2.365, 2.957, 3.506, 8.152, -2.954, 51.755 ], "bp2_params": [ 4.377, -0.930, -1.344, -11.872, 9.684, -34.726 ], "groove_widths": [ 17.447, 15.776, 13.723, 13.239 ], "simple_Rise": 3.857, "simple_Twist": 28.234, "simple_hRise": 3.145, "simple_hTwist": 29.205 }, { "index": 12, "nt1": "///A/25", "nt2": "///A/561", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 4.377, -0.930, -1.344, -11.872, 9.684, -34.726 ], "step_params": [ 1.836, -0.738, 3.136, 8.794, 4.310, 50.799 ], "heli_params": [ -1.137, -1.513, 3.320, 4.971, -10.143, 51.673 ], "bp2_params": [ 6.561, -4.032, -0.990, 9.272, 14.875, -4.435 ], "groove_widths": [ 18.417, 16.722, 9.572, 9.500 ], "simple_Rise": 3.136, "simple_Twist": 28.974, "simple_hRise": 3.393, "simple_hTwist": 30.551 }, { "index": 13, "nt1": "///A/26", "nt2": "///A/560", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.561, -4.032, -0.990, 9.272, 14.875, -4.435 ], "step_params": [ 0.987, -0.038, 3.208, 14.143, 4.582, 30.703 ], "heli_params": [ -0.832, 0.680, 3.298, 8.086, -24.958, 34.035 ], "bp2_params": [ 7.126, -5.195, -0.290, 36.911, 14.845, -16.840 ], "groove_widths": [ 18.141, 16.024, 13.324, 13.245 ], "simple_Rise": 3.208, "simple_Twist": 22.004, "simple_hRise": 3.185, "simple_hTwist": 26.504 }, { "index": 14, "nt1": "///A/27", "nt2": "///A/559", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 7.126, -5.195, -0.290, 36.911, 14.845, -16.840 ], "step_params": [ 1.838, -1.531, 4.520, -4.793, -0.163, -14.453 ], "heli_params": [ 5.971, 1.256, 4.852, 0.628, -18.401, -15.224 ], "bp2_params": [ -7.243, -4.418, 1.049, -8.726, -8.406, 12.809 ], "groove_widths": [ 16.936, 14.530, 15.408, 15.059 ], "simple_Rise": 4.520, "simple_Twist": 90.179, "simple_hRise": 4.442, "simple_hTwist": 90.279 }, { "index": 15, "nt1": "///A/28", "nt2": "///A/558", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -7.243, -4.418, 1.049, -8.726, -8.406, 12.809 ], "step_params": [ -0.801, -0.215, 3.494, -0.395, 4.068, 51.985 ], "heli_params": [ -0.533, 0.884, 3.475, 4.633, 0.450, 52.134 ], "bp2_params": [ -2.279, -1.670, 0.276, -1.078, -7.244, 6.774 ], "groove_widths": [ 17.115, 14.649, 13.586, 13.239 ], "simple_Rise": 3.494, "simple_Twist": 14.814, "simple_hRise": 3.334, "simple_hTwist": 15.365 }, { "index": 16, "nt1": "///A/29", "nt2": "///A/557", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.279, -1.670, 0.276, -1.078, -7.244, 6.774 ], "step_params": [ -0.110, -1.359, 3.298, -2.394, 12.901, 43.366 ], "heli_params": [ -2.867, -0.061, 2.806, 17.000, 3.154, 45.215 ], "bp2_params": [ -0.225, -0.153, 0.233, -5.366, 15.671, 3.143 ], "groove_widths": [ 18.172, 15.844, 13.076, 12.168 ], "simple_Rise": 3.298, "simple_Twist": 30.043, "simple_hRise": 2.518, "simple_hTwist": 32.723 }, { "index": 17, "nt1": "///A/30", "nt2": "///A/556", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.225, -0.153, 0.233, -5.366, 15.671, 3.143 ], "step_params": [ 0.567, -1.431, 3.561, 0.160, 17.701, 38.548 ], "heli_params": [ -3.805, -0.769, 2.685, 25.255, -0.229, 42.277 ], "bp2_params": [ 0.156, -0.115, -0.047, -5.176, 9.509, -1.892 ], "groove_widths": [ 18.810, 17.494, 13.547, 7.845 ], "simple_Rise": 3.561, "simple_Twist": 36.104, "simple_hRise": 2.612, "simple_hTwist": 40.080 }, { "index": 18, "nt1": "///A/31", "nt2": "///A/521", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.156, -0.115, -0.047, -5.176, 9.509, -1.892 ], "step_params": [ 0.645, -2.345, 3.109, -3.461, 7.674, 34.562 ], "heli_params": [ -4.812, -1.493, 2.474, 12.684, 5.721, 35.542 ], "bp2_params": [ 0.242, -0.178, 0.438, -0.605, 11.498, -0.305 ], "groove_widths": [ 20.374, 15.998, 8.458, 8.003 ], "simple_Rise": 3.109, "simple_Twist": 34.468, "simple_hRise": 2.472, "simple_hTwist": 35.451 }, { "index": 19, "nt1": "///A/32", "nt2": "///A/520", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.242, -0.178, 0.438, -0.605, 11.498, -0.305 ], "step_params": [ -2.800, -1.874, 3.190, 10.590, 11.805, 73.987 ], "heli_params": [ -1.849, 2.573, 2.550, 9.702, -8.703, 75.429 ], "bp2_params": [ 3.957, -1.729, 0.538, 6.814, 2.038, -91.307 ], "groove_widths": [ 19.109, 9.289, 10.464, 10.149 ], "simple_Rise": 3.190, "simple_Twist": 51.836, "simple_hRise": 2.177, "simple_hTwist": 54.047 }, { "index": 20, "nt1": "///A/33", "nt2": "///A/494", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 3.957, -1.729, 0.538, 6.814, 2.038, -91.307 ], "step_params": [ 3.653, -4.756, 3.315, -25.975, -14.022, 148.340 ], "heli_params": [ -2.407, -2.001, 3.238, -7.275, 13.476, 149.411 ], "bp2_params": [ -3.548, 3.639, 0.296, -31.656, -40.170, 73.487 ], "groove_widths": [ 16.857, 10.679, 13.550, 12.826 ], "simple_Rise": 3.315, "simple_Twist": 83.803, "simple_hRise": 2.928, "simple_hTwist": 87.934 }, { "index": 21, "nt1": "///A/501", "nt2": "///A/493", "bp": "A+G", "name": "--", "Saenger": "10-X", "LW": "tWS", "DSSR": "tW+m", "bp1_params": [ -3.548, 3.639, 0.296, -31.656, -40.170, 73.487 ], "step_params": [ -0.845, -1.090, 3.168, -5.219, 6.678, -102.987 ], "heli_params": [ 0.601, -0.613, 3.183, -4.262, -3.331, -103.236 ], "bp2_params": [ -0.293, -0.227, 1.003, 13.868, 18.888, 3.479 ], "groove_widths": [ 17.413, 16.563, 19.301, 19.299 ], "simple_Rise": 3.168, "simple_Twist": -14.306, "simple_hRise": 2.902, "simple_hTwist": -16.617 }, { "index": 22, "nt1": "///A/35", "nt2": "///A/492", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.293, -0.227, 1.003, 13.868, 18.888, 3.479 ], "step_params": [ 0.889, -2.640, 3.503, 13.102, 23.370, 30.398 ], "heli_params": [ -6.143, 0.006, 1.454, 36.856, -20.663, 40.310 ], "bp2_params": [ -0.198, -0.119, -0.613, -5.117, -4.950, 0.891 ], "groove_widths": [ 17.304, 16.268, 25.130, 24.860 ], "simple_Rise": 3.503, "simple_Twist": 30.186, "simple_hRise": 1.440, "simple_hTwist": 40.153 }, { "index": 23, "nt1": "///A/36", "nt2": "///A/491", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.198, -0.119, -0.613, -5.117, -4.950, 0.891 ], "step_params": [ 0.453, -1.689, 3.221, -1.082, -0.909, 41.888 ], "heli_params": [ -2.268, -0.745, 3.243, -1.271, 1.512, 41.911 ], "bp2_params": [ 0.212, -0.122, -0.173, -2.318, -2.065, 0.364 ], "groove_widths": [ 16.766, 14.858, 18.067, 17.664 ], "simple_Rise": 3.221, "simple_Twist": 40.101, "simple_hRise": 3.244, "simple_hTwist": 40.125 }, { "index": 24, "nt1": "///A/37", "nt2": "///A/489", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.212, -0.122, -0.173, -2.318, -2.065, 0.364 ], "step_params": [ 0.217, -1.179, 3.014, -7.222, 11.664, 32.312 ], "heli_params": [ -3.462, -1.291, 2.361, 19.878, 12.308, 35.032 ], "bp2_params": [ 0.091, -0.295, 1.151, 2.651, -1.714, -0.357 ], "groove_widths": [ 16.830, 14.274, 18.609, 17.749 ], "simple_Rise": 3.014, "simple_Twist": 32.778, "simple_hRise": 2.372, "simple_hTwist": 35.460 }, { "index": 25, "nt1": "///A/38", "nt2": "///A/488", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.091, -0.295, 1.151, 2.651, -1.714, -0.357 ], "step_params": [ 0.773, -2.471, 3.202, 2.804, 0.771, 30.866 ], "heli_params": [ -4.769, -0.917, 3.197, 1.444, -5.254, 31.000 ], "bp2_params": [ 0.148, -0.298, 0.916, 2.427, -3.466, -2.767 ], "groove_widths": [ 16.605, 14.842, 18.831, 16.633 ], "simple_Rise": 3.202, "simple_Twist": 30.707, "simple_hRise": 3.197, "simple_hTwist": 30.842 }, { "index": 26, "nt1": "///A/39", "nt2": "///A/487", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.148, -0.298, 0.916, 2.427, -3.466, -2.767 ], "step_params": [ -1.083, -2.059, 3.288, -2.421, 1.028, 25.356 ], "heli_params": [ -4.962, 1.756, 3.290, 2.333, 5.497, 25.490 ], "bp2_params": [ -0.098, -0.171, 0.643, 0.884, -3.979, -0.114 ], "groove_widths": [ 16.662, 15.728, 18.904, 16.375 ], "simple_Rise": 3.288, "simple_Twist": 26.422, "simple_hRise": 3.291, "simple_hTwist": 26.550 }, { "index": 27, "nt1": "///A/40", "nt2": "///A/486", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.098, -0.171, 0.643, 0.884, -3.979, -0.114 ], "step_params": [ -0.316, -1.839, 2.980, -0.687, 8.481, 34.593 ], "heli_params": [ -4.054, 0.432, 2.480, 14.002, 1.133, 35.593 ], "bp2_params": [ 0.064, -0.130, 0.584, 0.188, 4.377, -1.282 ], "groove_widths": [ 17.442, 16.296, 17.944, 14.744 ], "simple_Rise": 2.980, "simple_Twist": 33.931, "simple_hRise": 2.469, "simple_hTwist": 34.951 }, { "index": 28, "nt1": "///A/41", "nt2": "///A/485", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.064, -0.130, 0.584, 0.188, 4.377, -1.282 ], "step_params": [ 0.706, -1.879, 3.112, -0.873, 4.825, 28.022 ], "heli_params": [ -4.822, -1.617, 2.734, 9.868, 1.785, 28.439 ], "bp2_params": [ -0.190, -0.294, 0.801, 3.456, 1.839, 1.003 ], "groove_widths": [ 17.528, 15.865, 16.578, 10.377 ], "simple_Rise": 3.112, "simple_Twist": 29.357, "simple_hRise": 2.753, "simple_hTwist": 29.755 }, { "index": 29, "nt1": "///A/42", "nt2": "///A/484", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.190, -0.294, 0.801, 3.456, 1.839, 1.003 ], "step_params": [ 0.621, -2.637, 2.957, 6.439, 3.499, 36.040 ], "heli_params": [ -4.604, -0.210, 2.765, 5.584, -10.276, 36.753 ], "bp2_params": [ -0.140, -0.156, 0.390, 1.923, -0.231, -1.181 ], "groove_widths": [ 16.833, null, 13.818, null ], "simple_Rise": 2.957, "simple_Twist": 36.010, "simple_hRise": 2.764, "simple_hTwist": 36.724 }, { "index": 30, "nt1": "///A/43", "nt2": "///A/483", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.140, -0.156, 0.390, 1.923, -0.231, -1.181 ], "step_params": [ 2.881, -0.360, 3.447, 13.683, -3.353, 53.750 ], "heli_params": [ -0.158, -2.166, 4.029, -3.639, -14.849, 55.432 ], "bp2_params": [ 0.021, -0.117, -0.134, -5.418, 15.582, 1.470 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.447, "simple_Twist": 52.780, "simple_hRise": 4.038, "simple_hTwist": 54.497 }, { "index": 31, "nt1": "///A/44", "nt2": "///A/481", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.021, -0.117, -0.134, -5.418, 15.582, 1.470 ], "step_params": [ 0.811, -1.759, 2.967, 1.593, 24.947, 23.559 ], "heli_params": [ -5.728, -1.204, 0.832, 47.261, -3.018, 34.221 ], "bp2_params": [ -0.221, -0.098, -0.209, 4.492, -9.316, 2.487 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.967, "simple_Twist": 24.813, "simple_hRise": 0.921, "simple_hTwist": 35.082 }, { "index": 32, "nt1": "///A/45", "nt2": "///A/480", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 3, "num_stems": 1, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.272, "helical_rise_std": 0.006, "helical_radius": 9.612, "helical_radius_std": 0.618, "helical_axis": [ -0.086, 0.778, 0.623 ], "point1": [ 163.469, 229.853, 192.820 ], "point2": [ 163.189, 232.397, 194.857 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/46", "nt2": "///A/181", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.186, -0.198, -0.588, -5.270, -1.247, 0.500 ], "step_params": [ -0.204, -1.566, 3.235, -4.874, 0.251, 28.321 ], "heli_params": [ -3.212, -0.676, 3.211, 0.508, 9.869, 28.730 ], "bp2_params": [ 0.192, -0.172, 0.001, 3.225, 3.790, 2.518 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.235, "simple_Twist": 28.161, "simple_hRise": 3.210, "simple_hTwist": 28.573 }, { "index": 2, "nt1": "///A/47", "nt2": "///A/180", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 4, "num_stems": 3, "strand1": "AGAAGGACGGUGUA", "strand2": "UAAGCCUGCCACAA", "bp_type": "....|||||||||.", "helix_form": "x.x..AxA.xxA.", "helical_rise": 3.201, "helical_rise_std": 0.801, "helical_radius": 8.874, "helical_radius_std": 2.530, "helical_axis": [ -0.494, -0.736, 0.464 ], "point1": [ 165.339, 234.477, 205.070 ], "point2": [ 144.787, 203.858, 224.382 ], "num_pairs": 14, "pairs": [ { "index": 1, "nt1": "///A/49", "nt2": "///A/119", "bp": "A+U", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ 0.620, -3.840, 0.569, -19.035, -5.899, 64.854 ], "step_params": [ -0.071, 2.780, 2.892, -4.075, 18.109, 129.378 ], "heli_params": [ 1.411, 0.012, 3.091, 9.996, 2.249, 130.086 ], "bp2_params": [ 6.541, -3.774, 0.678, 11.653, 7.561, -3.392 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.892, "simple_Twist": -55.562, "simple_hRise": 1.966, "simple_hTwist": -58.345 }, { "index": 2, "nt1": "///A/51", "nt2": "///A/117", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.541, -3.774, 0.678, 11.653, 7.561, -3.392 ], "step_params": [ -2.424, -3.477, 3.534, -0.337, -11.443, -126.375 ], "heli_params": [ 2.042, -1.359, 3.351, 6.405, -0.189, -126.663 ], "bp2_params": [ 5.671, -5.779, -0.470, 8.882, -11.006, 164.772 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.534, "simple_Twist": 72.121, "simple_hRise": 3.983, "simple_hTwist": 72.902 }, { "index": 3, "nt1": "///A/52", "nt2": "///A/118", "bp": "A+A", "name": "--", "Saenger": "02-II", "LW": "tHH", "DSSR": "tM+M", "bp1_params": [ 5.671, -5.779, -0.470, 8.882, -11.006, 164.772 ], "step_params": [ -0.776, -1.088, 3.358, -7.414, -4.460, 124.201 ], "heli_params": [ -0.576, 0.373, 3.404, -2.522, 4.192, 124.374 ], "bp2_params": [ -6.439, -3.463, -1.266, -1.712, -6.643, -2.251 ], "groove_widths": [ 18.840, null, 16.223, null ], "simple_Rise": 3.358, "simple_Twist": 9.938, "simple_hRise": 3.340, "simple_hTwist": 13.170 }, { "index": 4, "nt1": "///A/53", "nt2": "///A/116", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.439, -3.463, -1.266, -1.712, -6.643, -2.251 ], "step_params": [ 0.587, -0.430, 4.306, -2.875, 1.961, 57.102 ], "heli_params": [ -0.590, -0.819, 4.259, 2.050, 3.004, 57.199 ], "bp2_params": [ -0.215, -0.141, -0.649, -7.220, -4.094, 2.813 ], "groove_widths": [ 18.721, 17.533, 12.178, 11.539 ], "simple_Rise": 4.306, "simple_Twist": 17.156, "simple_hRise": 4.078, "simple_hTwist": 17.503 }, { "index": 5, "nt1": "///A/54", "nt2": "///A/115", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.215, -0.141, -0.649, -7.220, -4.094, 2.813 ], "step_params": [ 0.757, -2.295, 3.233, -1.230, 5.458, 21.893 ], "heli_params": [ -7.648, -2.335, 2.546, 14.078, 3.172, 22.588 ], "bp2_params": [ -0.194, -0.137, -0.027, -4.817, -0.604, 1.895 ], "groove_widths": [ 18.874, 16.713, 14.221, 11.101 ], "simple_Rise": 3.233, "simple_Twist": 21.818, "simple_hRise": 2.543, "simple_hTwist": 22.515 }, { "index": 6, "nt1": "///A/55", "nt2": "///A/114", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.194, -0.137, -0.027, -4.817, -0.604, 1.895 ], "step_params": [ 0.055, -1.523, 3.229, -0.570, 1.528, 41.227 ], "heli_params": [ -2.322, -0.138, 3.172, 2.168, 0.809, 41.258 ], "bp2_params": [ 0.099, -0.125, 0.152, -4.928, -1.500, -1.338 ], "groove_widths": [ 16.260, 14.360, 15.554, 14.895 ], "simple_Rise": 3.229, "simple_Twist": 39.988, "simple_hRise": 3.170, "simple_hTwist": 40.020 }, { "index": 7, "nt1": "///A/56", "nt2": "///A/113", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.099, -0.125, 0.152, -4.928, -1.500, -1.338 ], "step_params": [ 1.605, -1.149, 3.215, 2.238, 3.260, 45.129 ], "heli_params": [ -1.776, -1.888, 3.201, 4.238, -2.910, 45.293 ], "bp2_params": [ 0.184, -0.180, 0.101, -2.248, -1.394, -1.835 ], "groove_widths": [ 16.404, 15.530, 14.829, 13.641 ], "simple_Rise": 3.215, "simple_Twist": 44.249, "simple_hRise": 3.200, "simple_hTwist": 44.417 }, { "index": 8, "nt1": "///A/57", "nt2": "///A/70", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.184, -0.180, 0.101, -2.248, -1.394, -1.835 ], "step_params": [ 0.657, -1.782, 3.304, 3.017, 17.377, 29.106 ], "heli_params": [ -5.504, -0.700, 2.009, 31.224, -5.421, 33.933 ], "bp2_params": [ -0.188, -0.132, -0.509, -6.862, -5.028, 1.879 ], "groove_widths": [ 16.418, 13.394, 14.245, 11.751 ], "simple_Rise": 3.304, "simple_Twist": 31.164, "simple_hRise": 2.104, "simple_hTwist": 35.700 }, { "index": 9, "nt1": "///A/58", "nt2": "///A/69", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.188, -0.132, -0.509, -6.862, -5.028, 1.879 ], "step_params": [ -0.790, -1.319, 3.347, -2.782, 0.328, 36.463 ], "heli_params": [ -2.149, 0.864, 3.385, 0.524, 4.439, 36.567 ], "bp2_params": [ -0.187, -0.148, -0.446, -7.066, -3.584, 1.458 ], "groove_widths": [ 17.831, 11.721, 14.306, 10.949 ], "simple_Rise": 3.347, "simple_Twist": 36.657, "simple_hRise": 3.384, "simple_hTwist": 36.760 }, { "index": 10, "nt1": "///A/59", "nt2": "///A/68", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.187, -0.148, -0.446, -7.066, -3.584, 1.458 ], "step_params": [ -0.939, -1.899, 3.652, -15.163, 3.582, 48.772 ], "heli_params": [ -2.488, -0.114, 3.636, 4.215, 17.841, 51.055 ], "bp2_params": [ -0.068, -0.351, 1.691, -21.219, 10.754, 4.716 ], "groove_widths": [ 18.545, 14.094, 12.557, 10.306 ], "simple_Rise": 3.652, "simple_Twist": 48.563, "simple_hRise": 3.635, "simple_hTwist": 50.856 }, { "index": 11, "nt1": "///A/74", "nt2": "///A/67", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.068, -0.351, 1.691, -21.219, 10.754, 4.716 ], "step_params": [ -1.779, -1.440, 2.544, 27.576, -5.952, 46.565 ], "heli_params": [ -1.337, 3.107, 1.506, -6.845, -31.715, 54.035 ], "bp2_params": [ -0.189, -0.152, -0.237, 15.552, -9.468, 2.204 ], "groove_widths": [ 17.043, null, 11.204, null ], "simple_Rise": 2.544, "simple_Twist": 47.149, "simple_hRise": 1.521, "simple_hTwist": 54.528 }, { "index": 12, "nt1": "///A/88", "nt2": "///A/66", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.189, -0.152, -0.237, 15.552, -9.468, 2.204 ], "step_params": [ 0.985, -1.468, 3.556, 10.876, -5.553, 32.580 ], "heli_params": [ -1.462, 0.304, 3.870, -9.492, -18.592, 34.735 ], "bp2_params": [ 0.024, -0.138, -0.543, 13.785, -21.508, 0.274 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.556, "simple_Twist": 31.743, "simple_hRise": 3.872, "simple_hTwist": 33.954 }, { "index": 13, "nt1": "///A/89", "nt2": "///A/65", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.024, -0.138, -0.543, 13.785, -21.508, 0.274 ], "step_params": [ 1.374, -0.499, 3.641, 2.393, 3.977, -51.348 ], "heli_params": [ 0.274, 1.760, 3.605, -4.579, 2.755, -51.543 ], "bp2_params": [ 1.110, 2.432, 0.557, -25.846, -11.205, -160.803 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.641, "simple_Twist": 5.884, "simple_hRise": 3.034, "simple_hTwist": 7.493 }, { "index": 14, "nt1": "///A/90", "nt2": "///A/64", "bp": "A+A", "name": "--", "Saenger": "01-I", "LW": "tWW", "DSSR": "tW+W" } ] }, { "index": 5, "num_stems": 1, "strand1": "GCUUCGGGGA", "strand2": "AGAGGCCUAG", "bp_type": ".||||||...", "helix_form": "..AA.A...", "helical_rise": 2.612, "helical_rise_std": 1.075, "helical_radius": 8.965, "helical_radius_std": 2.133, "helical_axis": [ -0.972, -0.033, 0.234 ], "point1": [ 142.340, 227.230, 212.651 ], "point2": [ 119.825, 226.461, 218.064 ], "num_pairs": 10, "pairs": [ { "index": 1, "nt1": "///A/75", "nt2": "///A/110", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.352, 2.814, -1.266, 40.267, 3.197, 13.790 ], "step_params": [ -1.332, -2.325, 3.630, -8.495, 20.743, 34.243 ], "heli_params": [ -5.576, 0.997, 2.191, 31.410, 12.863, 40.743 ], "bp2_params": [ 0.180, -0.253, -0.685, 4.074, -1.266, 0.227 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.630, "simple_Twist": 34.860, "simple_hRise": 2.220, "simple_hTwist": 41.256 }, { "index": 2, "nt1": "///A/76", "nt2": "///A/109", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.180, -0.253, -0.685, 4.074, -1.266, 0.227 ], "step_params": [ -1.181, -2.369, 3.829, -8.740, 1.658, 27.389 ], "heli_params": [ -5.215, 0.013, 3.866, 3.390, 17.869, 28.771 ], "bp2_params": [ -0.013, -0.113, -0.314, -3.463, 0.830, -0.894 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.829, "simple_Twist": 28.514, "simple_hRise": 3.872, "simple_hTwist": 29.842 }, { "index": 3, "nt1": "///A/77", "nt2": "///A/108", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.013, -0.113, -0.314, -3.463, 0.830, -0.894 ], "step_params": [ -0.334, -1.776, 3.375, -2.514, -0.322, 35.796 ], "heli_params": [ -2.834, 0.168, 3.405, -0.523, 4.084, 35.883 ], "bp2_params": [ 1.490, -0.494, -0.320, 0.490, 6.282, -4.105 ], "groove_widths": [ 16.883, null, 16.148, null ], "simple_Rise": 3.375, "simple_Twist": 27.477, "simple_hRise": 3.411, "simple_hTwist": 27.591 }, { "index": 4, "nt1": "///A/78", "nt2": "///A/107", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.490, -0.494, -0.320, 0.490, 6.282, -4.105 ], "step_params": [ 0.516, -1.805, 2.901, 4.232, 12.792, 30.045 ], "heli_params": [ -4.923, -0.338, 2.036, 23.260, -7.696, 32.864 ], "bp2_params": [ 0.188, -0.157, -0.137, -1.429, -7.912, 3.431 ], "groove_widths": [ 17.124, 15.459, 16.071, 10.781 ], "simple_Rise": 2.901, "simple_Twist": 36.959, "simple_hRise": 2.223, "simple_hTwist": 39.258 }, { "index": 5, "nt1": "///A/79", "nt2": "///A/106", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.188, -0.157, -0.137, -1.429, -7.912, 3.431 ], "step_params": [ 0.201, -2.030, 3.190, -0.910, 13.155, 26.512 ], "heli_params": [ -6.309, -0.554, 1.974, 26.688, 1.847, 29.558 ], "bp2_params": [ -0.203, -0.145, -0.306, -3.694, 2.986, 2.263 ], "groove_widths": [ 17.267, 15.374, 16.504, 10.488 ], "simple_Rise": 3.190, "simple_Twist": 29.025, "simple_hRise": 2.089, "simple_hTwist": 31.822 }, { "index": 6, "nt1": "///A/80", "nt2": "///A/105", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.203, -0.145, -0.306, -3.694, 2.986, 2.263 ], "step_params": [ -0.067, -1.584, 3.292, 2.751, 10.635, 38.167 ], "heli_params": [ -3.507, 0.403, 2.760, 15.867, -4.105, 39.660 ], "bp2_params": [ -0.180, -0.257, -0.953, -2.851, -9.393, 3.685 ], "groove_widths": [ 17.227, 15.466, 14.897, 11.699 ], "simple_Rise": 3.292, "simple_Twist": 38.193, "simple_hRise": 2.760, "simple_hTwist": 39.685 }, { "index": 7, "nt1": "///A/81", "nt2": "///A/104", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.180, -0.257, -0.953, -2.851, -9.393, 3.685 ], "step_params": [ -0.961, -1.011, 3.802, 3.428, -1.731, 57.088 ], "heli_params": [ -0.946, 1.221, 3.770, -1.809, -3.583, 57.206 ], "bp2_params": [ 7.131, -2.560, -0.790, -2.163, -15.061, -14.648 ], "groove_widths": [ 17.329, null, 13.620, null ], "simple_Rise": 3.802, "simple_Twist": 16.724, "simple_hRise": 3.617, "simple_hTwist": 17.156 }, { "index": 8, "nt1": "///A/82", "nt2": "///A/103", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "t.H", "DSSR": "t.-M", "bp1_params": [ 7.131, -2.560, -0.790, -2.163, -15.061, -14.648 ], "step_params": [ -0.693, -0.723, 3.302, 19.447, 11.381, 40.143 ], "heli_params": [ -1.865, 2.491, 2.458, 15.220, -26.007, 45.805 ], "bp2_params": [ 7.912, -5.444, 0.724, 24.212, -1.626, -47.067 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.302, "simple_Twist": 27.178, "simple_hRise": 1.962, "simple_hTwist": 35.168 }, { "index": 9, "nt1": "///A/83", "nt2": "///A/102", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 7.912, -5.444, 0.724, 24.212, -1.626, -47.067 ], "step_params": [ 2.078, -0.281, 3.916, -2.301, -11.885, -20.881 ], "heli_params": [ 5.283, 4.084, 3.458, 29.780, -5.766, -24.102 ], "bp2_params": [ -6.604, -4.223, 0.688, 4.064, 1.057, -6.575 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.916, "simple_Twist": 75.284, "simple_hRise": 3.864, "simple_hTwist": 76.108 }, { "index": 10, "nt1": "///A/84", "nt2": "///A/101", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m" } ] }, { "index": 6, "num_stems": 1, "strand1": "GCUAC", "strand2": "CGACG", "bp_type": "|||.|", "helix_form": "A.xA", "helical_rise": 3.284, "helical_rise_std": 1.120, "helical_radius": 10.155, "helical_radius_std": 1.308, "helical_axis": [ 0.894, -0.191, -0.406 ], "point1": [ 126.138, 210.348, 229.948 ], "point2": [ 137.586, 207.907, 224.750 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/85", "nt2": "///A/97", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.161, -0.201, -0.606, -5.377, 4.546, -0.018 ], "step_params": [ 0.973, -1.802, 2.941, 0.897, 2.834, 32.683 ], "heli_params": [ -3.618, -1.586, 2.804, 5.023, -1.590, 32.814 ], "bp2_params": [ 0.170, -0.155, -0.594, 4.368, 3.465, -0.638 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.941, "simple_Twist": 30.671, "simple_hRise": 2.794, "simple_hTwist": 30.811 }, { "index": 2, "nt1": "///A/86", "nt2": "///A/96", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.170, -0.155, -0.594, 4.368, 3.465, -0.638 ], "step_params": [ 0.152, -2.413, 3.995, -5.203, -6.896, 18.083 ], "heli_params": [ -2.610, -3.702, 4.396, -20.491, 15.461, 20.025 ], "bp2_params": [ -0.149, -0.170, 0.581, 11.358, 10.721, -2.295 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.995, "simple_Twist": 19.318, "simple_hRise": 4.396, "simple_hTwist": 21.144 }, { "index": 3, "nt1": "///A/87", "nt2": "///A/95", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.149, -0.170, 0.581, 11.358, 10.721, -2.295 ], "step_params": [ -1.450, -2.292, 6.768, -5.968, 7.062, 84.397 ], "heli_params": [ -2.037, 0.790, 6.669, 5.243, 4.431, 84.808 ], "bp2_params": [ -1.373, -0.266, -0.158, -8.152, 10.183, 6.522 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 6.768, "simple_Twist": 92.081, "simple_hRise": 6.685, "simple_hTwist": 92.440 }, { "index": 4, "nt1": "///A/61", "nt2": "///A/93", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.373, -0.266, -0.158, -8.152, 10.183, 6.522 ], "step_params": [ 0.319, -1.143, 3.296, -2.618, 1.891, 30.828 ], "heli_params": [ -2.500, -1.098, 3.184, 3.545, 4.907, 30.993 ], "bp2_params": [ 0.226, -0.178, 0.649, 6.860, 8.545, 6.530 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.296, "simple_Twist": 21.293, "simple_hRise": 3.122, "simple_hTwist": 21.534 }, { "index": 5, "nt1": "///A/62", "nt2": "///A/92", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 7, "num_stems": 2, "strand1": "CCCACCACUCG", "strand2": "GGGUGGUGAGG", "bp_type": "||||||||||.", "helix_form": "AAxAAAAAA.", "helical_rise": 2.612, "helical_rise_std": 0.398, "helical_radius": 9.479, "helical_radius_std": 2.095, "helical_axis": [ -0.085, 0.444, 0.892 ], "point1": [ 172.272, 230.148, 216.317 ], "point2": [ 170.066, 241.659, 239.466 ], "num_pairs": 11, "pairs": [ { "index": 1, "nt1": "///A/127", "nt2": "///A/122", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.249, -0.132, -0.211, 9.312, -5.619, 1.536 ], "step_params": [ -0.161, -2.033, 3.249, -4.989, 10.110, 28.737 ], "heli_params": [ -5.590, -0.568, 2.407, 19.450, 9.598, 30.826 ], "bp2_params": [ 0.193, -0.163, 0.379, 4.169, 3.814, 1.120 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.249, "simple_Twist": 28.731, "simple_hRise": 2.407, "simple_hTwist": 30.821 }, { "index": 2, "nt1": "///A/128", "nt2": "///A/121", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.193, -0.163, 0.379, 4.169, 3.814, 1.120 ], "step_params": [ 0.011, -1.739, 3.283, -0.350, 4.129, 38.369 ], "heli_params": [ -3.129, -0.059, 3.086, 6.260, 0.531, 38.584 ], "bp2_params": [ 0.182, -0.298, 0.804, 0.351, -3.909, -3.158 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.283, "simple_Twist": 38.686, "simple_hRise": 3.088, "simple_hTwist": 38.899 }, { "index": 3, "nt1": "///A/129", "nt2": "///A/120", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.182, -0.298, 0.804, 0.351, -3.909, -3.158 ], "step_params": [ -1.409, -4.040, 3.162, 1.371, -8.360, 4.273 ], "heli_params": [ 4.728, 13.302, 4.780, -62.448, -10.243, 9.487 ], "bp2_params": [ 0.002, -0.029, 0.307, 0.769, 3.103, -1.846 ], "groove_widths": [ 16.220, null, 21.599, null ], "simple_Rise": 3.162, "simple_Twist": 4.902, "simple_hRise": 4.837, "simple_hTwist": 9.786 }, { "index": 4, "nt1": "///A/130", "nt2": "///A/149", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.002, -0.029, 0.307, 0.769, 3.103, -1.846 ], "step_params": [ 0.109, -1.740, 3.151, -2.815, 0.816, 34.898 ], "heli_params": [ -3.009, -0.585, 3.093, 1.358, 4.684, 35.017 ], "bp2_params": [ 0.195, -0.223, 0.661, 4.031, 1.695, 1.801 ], "groove_widths": [ 17.652, 16.506, 20.507, 19.152 ], "simple_Rise": 3.151, "simple_Twist": 34.015, "simple_hRise": 3.091, "simple_hTwist": 34.137 }, { "index": 5, "nt1": "///A/131", "nt2": "///A/148", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.195, -0.223, 0.661, 4.031, 1.695, 1.801 ], "step_params": [ -0.236, -1.639, 3.069, 6.059, 12.279, 37.535 ], "heli_params": [ -3.623, 0.947, 2.374, 18.352, -9.056, 39.870 ], "bp2_params": [ 0.175, -0.178, 0.102, -0.612, -4.295, -0.636 ], "groove_widths": [ 18.420, 16.411, 17.788, 14.913 ], "simple_Rise": 3.069, "simple_Twist": 37.732, "simple_hRise": 2.379, "simple_hTwist": 40.054 }, { "index": 6, "nt1": "///A/132", "nt2": "///A/147", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.175, -0.178, 0.102, -0.612, -4.295, -0.636 ], "step_params": [ -0.682, -1.776, 2.923, -3.173, 10.269, 27.143 ], "heli_params": [ -5.342, 0.794, 2.185, 20.871, 6.449, 29.156 ], "bp2_params": [ 0.055, -0.100, 0.273, 1.510, 7.959, -3.381 ], "groove_widths": [ 17.724, 15.611, 14.513, 10.008 ], "simple_Rise": 2.923, "simple_Twist": 27.588, "simple_hRise": 2.198, "simple_hTwist": 29.570 }, { "index": 7, "nt1": "///A/133", "nt2": "///A/146", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.055, -0.100, 0.273, 1.510, 7.959, -3.381 ], "step_params": [ 0.548, -1.970, 3.100, 1.356, 4.384, 37.490 ], "heli_params": [ -3.563, -0.686, 2.877, 6.790, -2.099, 37.759 ], "bp2_params": [ 0.263, -0.187, 0.054, 6.664, 6.470, 0.678 ], "groove_widths": [ 17.308, 15.682, 15.529, 11.337 ], "simple_Rise": 3.100, "simple_Twist": 36.742, "simple_hRise": 2.871, "simple_hTwist": 37.018 }, { "index": 8, "nt1": "///A/134", "nt2": "///A/145", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.263, -0.187, 0.054, 6.664, 6.470, 0.678 ], "step_params": [ 0.662, -2.030, 3.191, 5.576, 2.656, 31.651 ], "heli_params": [ -4.114, -0.231, 3.084, 4.812, -10.104, 32.233 ], "bp2_params": [ 0.023, -0.191, -0.649, 5.831, 4.247, 3.551 ], "groove_widths": [ 16.748, null, 16.768, null ], "simple_Rise": 3.191, "simple_Twist": 32.789, "simple_hRise": 3.090, "simple_hTwist": 33.350 }, { "index": 9, "nt1": "///A/135", "nt2": "///A/144", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.023, -0.191, -0.649, 5.831, 4.247, 3.551 ], "step_params": [ -0.249, -2.534, 3.520, -4.615, 6.616, 32.267 ], "heli_params": [ -5.544, -0.342, 2.963, 11.678, 8.146, 33.234 ], "bp2_params": [ 0.272, -0.179, 0.213, -5.150, 14.748, 2.364 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.520, "simple_Twist": 30.973, "simple_hRise": 2.936, "simple_hTwist": 31.981 }, { "index": 10, "nt1": "///A/136", "nt2": "///A/143", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.272, -0.179, 0.213, -5.150, 14.748, 2.364 ], "step_params": [ -0.372, -1.744, 3.018, 3.190, 5.420, 52.611 ], "heli_params": [ -2.267, 0.601, 2.813, 6.090, -3.585, 52.959 ], "bp2_params": [ 6.463, -1.506, 0.108, -1.689, 26.911, 3.756 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.018, "simple_Twist": 18.792, "simple_hRise": 2.332, "simple_hTwist": 19.808 }, { "index": 11, "nt1": "///A/137", "nt2": "///A/142", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 8, "num_stems": 1, "strand1": "CCAUAUCUGAA", "strand2": "GGUAUAGGAUA", "bp_type": "|||||||....", "helix_form": "x.AAAA....", "helical_rise": 2.890, "helical_rise_std": 0.573, "helical_radius": 8.744, "helical_radius_std": 2.941, "helical_axis": [ 0.688, 0.686, -0.238 ], "point1": [ 174.428, 242.190, 207.210 ], "point2": [ 194.305, 262.018, 200.336 ], "num_pairs": 11, "pairs": [ { "index": 1, "nt1": "///A/152", "nt2": "///A/177", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.166, -0.270, -0.950, -10.421, 3.084, -1.723 ], "step_params": [ 1.429, -1.184, 2.865, -5.113, 7.622, 41.946 ], "heli_params": [ -2.241, -2.371, 2.441, 10.496, 7.041, 42.894 ], "bp2_params": [ 0.170, -0.177, -0.139, -0.202, -1.404, -1.759 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.865, "simple_Twist": 42.056, "simple_hRise": 2.442, "simple_hTwist": 43.001 }, { "index": 2, "nt1": "///A/153", "nt2": "///A/175", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.170, -0.177, -0.139, -0.202, -1.404, -1.759 ], "step_params": [ -0.634, -2.031, 2.760, -11.239, 17.680, 31.043 ], "heli_params": [ -4.874, -0.088, 1.557, 29.234, 18.583, 37.306 ], "bp2_params": [ 0.041, -0.231, 0.763, 0.220, -3.767, -0.954 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.760, "simple_Twist": 31.721, "simple_hRise": 1.584, "simple_hTwist": 37.866 }, { "index": 3, "nt1": "///A/154", "nt2": "///A/174", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.041, -0.231, 0.763, 0.220, -3.767, -0.954 ], "step_params": [ 0.038, -1.871, 3.294, 0.983, 0.872, 31.958 ], "heli_params": [ -3.553, 0.108, 3.242, 1.584, -1.784, 31.984 ], "bp2_params": [ -0.074, -0.123, 0.382, -0.145, -0.611, -1.349 ], "groove_widths": [ 17.306, null, 15.687, null ], "simple_Rise": 3.294, "simple_Twist": 32.534, "simple_hRise": 3.243, "simple_hTwist": 32.560 }, { "index": 4, "nt1": "///A/155", "nt2": "///A/173", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.074, -0.123, 0.382, -0.145, -0.611, -1.349 ], "step_params": [ 0.177, -1.809, 3.243, 0.887, 0.681, 29.579 ], "heli_params": [ -3.683, -0.162, 3.205, 1.332, -1.737, 29.599 ], "bp2_params": [ -0.001, -0.137, 0.167, -0.429, 4.715, 1.263 ], "groove_widths": [ 16.966, 15.680, 17.202, 13.025 ], "simple_Rise": 3.243, "simple_Twist": 29.158, "simple_hRise": 3.204, "simple_hTwist": 29.179 }, { "index": 5, "nt1": "///A/156", "nt2": "///A/172", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.001, -0.137, 0.167, -0.429, 4.715, 1.263 ], "step_params": [ 0.421, -2.057, 3.150, -0.669, 2.391, 32.229 ], "heli_params": [ -4.092, -0.867, 2.985, 4.299, 1.202, 32.322 ], "bp2_params": [ 0.063, -0.190, 0.263, 3.237, 5.556, 7.696 ], "groove_widths": [ 17.169, 15.596, 16.802, 14.221 ], "simple_Rise": 3.150, "simple_Twist": 31.971, "simple_hRise": 2.983, "simple_hTwist": 32.064 }, { "index": 6, "nt1": "///A/157", "nt2": "///A/171", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.063, -0.190, 0.263, 3.237, 5.556, 7.696 ], "step_params": [ -0.048, -1.681, 3.007, 9.686, 9.378, 30.941 ], "heli_params": [ -4.196, 1.420, 2.299, 16.624, -17.171, 33.685 ], "bp2_params": [ 0.167, -0.177, -0.492, 3.124, -3.216, 0.147 ], "groove_widths": [ 17.185, 15.620, 17.105, 15.895 ], "simple_Rise": 3.007, "simple_Twist": 30.110, "simple_hRise": 2.275, "simple_hTwist": 32.927 }, { "index": 7, "nt1": "///A/158", "nt2": "///A/170", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.167, -0.177, -0.492, 3.124, -3.216, 0.147 ], "step_params": [ 0.170, -2.484, 3.275, -2.233, 4.237, 29.593 ], "heli_params": [ -5.631, -0.764, 2.879, 8.228, 4.335, 29.970 ], "bp2_params": [ 0.555, -0.891, 0.051, -0.127, 2.734, -5.059 ], "groove_widths": [ 16.702, 15.054, 15.017, 14.374 ], "simple_Rise": 3.275, "simple_Twist": 27.495, "simple_hRise": 2.845, "simple_hTwist": 27.902 }, { "index": 8, "nt1": "///A/159", "nt2": "///A/169", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.555, -0.891, 0.051, -0.127, 2.734, -5.059 ], "step_params": [ -0.220, -1.073, 3.150, -2.315, 6.588, 57.852 ], "heli_params": [ -1.432, 0.110, 3.028, 6.783, 2.384, 58.236 ], "bp2_params": [ 6.604, -4.758, 1.000, 1.957, -2.443, -5.852 ], "groove_widths": [ 17.002, null, 13.070, null ], "simple_Rise": 3.150, "simple_Twist": 14.746, "simple_hRise": 2.450, "simple_hTwist": 16.308 }, { "index": 9, "nt1": "///A/160", "nt2": "///A/168", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.604, -4.758, 1.000, 1.957, -2.443, -5.852 ], "step_params": [ -6.184, 0.372, 3.174, 3.686, -2.969, 1.527 ], "heli_params": [ 0.836, 66.978, -3.830, -45.250, -56.167, 4.973 ], "bp2_params": [ -3.597, -1.632, -1.449, 6.654, -12.952, -98.953 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.174, "simple_Twist": 69.657, "simple_hRise": 2.869, "simple_hTwist": 69.798 }, { "index": 10, "nt1": "///A/161", "nt2": "///A/167", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -3.597, -1.632, -1.449, 6.654, -12.952, -98.953 ], "step_params": [ 0.241, -0.891, 3.269, 2.136, -7.891, 35.392 ], "heli_params": [ -0.291, -0.078, 3.391, -12.770, -3.457, 36.294 ], "bp2_params": [ -4.859, 0.321, -1.748, 5.617, -27.293, -98.378 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.269, "simple_Twist": 37.634, "simple_hRise": 3.388, "simple_hTwist": 38.480 }, { "index": 11, "nt1": "///A/162", "nt2": "///A/166", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W" } ] }, { "index": 9, "num_stems": 1, "strand1": "ACCCGGGGAACUG", "strand2": "GGGGCCCAUAAUC", "bp_type": ".||||||.....|", "helix_form": "AxAAAA..x...", "helical_rise": 3.016, "helical_rise_std": 0.776, "helical_radius": 9.301, "helical_radius_std": 3.829, "helical_axis": [ 0.452, -0.362, -0.816 ], "point1": [ 162.952, 221.538, 189.986 ], "point2": [ 179.214, 208.523, 160.633 ], "num_pairs": 13, "pairs": [ { "index": 1, "nt1": "///A/185", "nt2": "///A/218", "bp": "A-G", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.247, 1.442, 0.158, -7.362, 1.818, -18.865 ], "step_params": [ 1.061, -1.366, 3.388, -9.588, 1.748, 31.319 ], "heli_params": [ -2.716, -3.498, 2.869, 3.143, 17.245, 32.765 ], "bp2_params": [ 0.208, -0.324, 1.137, -5.043, 2.971, 2.548 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.388, "simple_Twist": 29.014, "simple_hRise": 2.817, "simple_hTwist": 30.574 }, { "index": 2, "nt1": "///A/186", "nt2": "///A/217", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.208, -0.324, 1.137, -5.043, 2.971, 2.548 ], "step_params": [ 2.031, -3.111, 5.236, -15.060, 6.584, 45.760 ], "heli_params": [ -4.529, -4.165, 3.962, 8.164, 18.671, 48.472 ], "bp2_params": [ 0.189, -0.239, 0.635, -0.329, -3.482, -0.980 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 5.236, "simple_Twist": 45.842, "simple_hRise": 3.965, "simple_hTwist": 48.549 }, { "index": 3, "nt1": "///A/187", "nt2": "///A/215", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.189, -0.239, 0.635, -0.329, -3.482, -0.980 ], "step_params": [ -0.404, -1.999, 2.944, -0.571, 8.678, 31.884 ], "heli_params": [ -4.727, 0.632, 2.340, 15.442, 1.017, 33.019 ], "bp2_params": [ 0.161, -0.226, 0.601, 1.674, -6.523, -1.899 ], "groove_widths": [ 20.295, null, 16.660, null ], "simple_Rise": 2.944, "simple_Twist": 31.687, "simple_hRise": 2.336, "simple_hTwist": 32.830 }, { "index": 4, "nt1": "///A/188", "nt2": "///A/214", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.161, -0.226, 0.601, 1.674, -6.523, -1.899 ], "step_params": [ 0.009, -2.059, 3.358, 2.593, 11.912, 28.521 ], "heli_params": [ -5.941, 0.436, 2.324, 22.902, -4.986, 30.968 ], "bp2_params": [ -0.195, -0.144, -0.528, -5.571, -6.899, 2.075 ], "groove_widths": [ 18.537, 15.433, 16.908, 12.412 ], "simple_Rise": 3.358, "simple_Twist": 30.880, "simple_hRise": 2.413, "simple_hTwist": 33.145 }, { "index": 5, "nt1": "///A/189", "nt2": "///A/213", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.195, -0.144, -0.528, -5.571, -6.899, 2.075 ], "step_params": [ -0.546, -1.718, 3.602, -1.873, 1.169, 34.226 ], "heli_params": [ -3.115, 0.603, 3.567, 1.983, 3.178, 34.295 ], "bp2_params": [ -0.179, -0.160, -0.656, -9.827, -1.489, 0.518 ], "groove_widths": [ 16.924, 15.191, 17.026, 13.518 ], "simple_Rise": 3.602, "simple_Twist": 33.928, "simple_hRise": 3.567, "simple_hTwist": 33.998 }, { "index": 6, "nt1": "///A/190", "nt2": "///A/212", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.179, -0.160, -0.656, -9.827, -1.489, 0.518 ], "step_params": [ 0.377, -1.819, 3.021, -1.943, 12.202, 29.196 ], "heli_params": [ -5.170, -0.983, 2.084, 22.953, 3.656, 31.650 ], "bp2_params": [ -0.175, -0.142, -0.113, -3.386, -0.459, 0.562 ], "groove_widths": [ 17.379, 15.679, 14.970, 12.193 ], "simple_Rise": 3.021, "simple_Twist": 29.233, "simple_hRise": 2.085, "simple_hTwist": 31.685 }, { "index": 7, "nt1": "///A/191", "nt2": "///A/211", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.175, -0.142, -0.113, -3.386, -0.459, 0.562 ], "step_params": [ -0.252, -0.930, 3.525, 2.073, 2.609, 61.322 ], "heli_params": [ -1.042, 0.352, 3.477, 2.556, -2.031, 61.404 ], "bp2_params": [ 6.840, -3.923, -0.167, -2.200, 1.875, -2.871 ], "groove_widths": [ 17.618, 15.695, 11.729, 11.401 ], "simple_Rise": 3.525, "simple_Twist": 15.686, "simple_hRise": 3.266, "simple_hTwist": 16.034 }, { "index": 8, "nt1": "///A/192", "nt2": "///A/210", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.840, -3.923, -0.167, -2.200, 1.875, -2.871 ], "step_params": [ -5.518, -1.123, 3.574, 7.673, 6.210, -7.656 ], "heli_params": [ -8.576, -8.395, 6.137, -32.896, 40.649, -12.486 ], "bp2_params": [ -4.034, -1.575, -0.828, -6.159, -0.188, -99.519 ], "groove_widths": [ 18.341, 16.442, 21.024, 17.997 ], "simple_Rise": 3.574, "simple_Twist": 60.876, "simple_hRise": 2.812, "simple_hTwist": 61.595 }, { "index": 9, "nt1": "///A/193", "nt2": "///A/209", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.034, -1.575, -0.828, -6.159, -0.188, -99.519 ], "step_params": [ 0.206, 1.023, 3.415, -7.405, 1.832, -97.049 ], "heli_params": [ -0.714, 0.008, 3.406, -1.221, -4.936, -97.273 ], "bp2_params": [ 5.643, -5.334, -1.812, 20.663, 7.269, 175.401 ], "groove_widths": [ 19.916, 18.884, 18.158, 17.362 ], "simple_Rise": 3.415, "simple_Twist": 32.935, "simple_hRise": 3.341, "simple_hTwist": 33.783 }, { "index": 10, "nt1": "///A/194", "nt2": "///A/207", "bp": "A+A", "name": "--", "Saenger": "02-II", "LW": "tHH", "DSSR": "tM+M", "bp1_params": [ 5.643, -5.334, -1.812, 20.663, 7.269, 175.401 ], "step_params": [ -0.493, -1.730, 3.345, 0.324, -2.692, 117.440 ], "heli_params": [ -0.984, 0.292, 3.369, -1.575, -0.189, 117.459 ], "bp2_params": [ -6.594, -4.949, -1.914, -6.022, -19.101, 4.688 ], "groove_widths": [ 22.196, null, 13.020, null ], "simple_Rise": 3.345, "simple_Twist": 12.867, "simple_hRise": 3.615, "simple_hTwist": 13.149 }, { "index": 11, "nt1": "///A/195", "nt2": "///A/206", "bp": "C-A", "name": "~Sheared", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.594, -4.949, -1.914, -6.022, -19.101, 4.688 ], "step_params": [ 1.024, 0.219, 4.281, -7.978, 1.016, 53.821 ], "heli_params": [ 0.160, -1.746, 4.105, 1.115, 8.758, 54.374 ], "bp2_params": [ -2.600, -1.186, -0.665, -9.455, -8.936, 15.419 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.281, "simple_Twist": 21.041, "simple_hRise": 3.656, "simple_hTwist": 22.510 }, { "index": 12, "nt1": "///A/196", "nt2": "///A/205", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.600, -1.186, -0.665, -9.455, -8.936, 15.419 ], "step_params": [ -0.550, -0.818, 3.275, -0.252, 3.885, 44.970 ], "heli_params": [ -1.411, 0.694, 3.200, 5.068, 0.329, 45.129 ], "bp2_params": [ -0.173, -0.280, -0.822, -2.185, -2.769, 0.711 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.275, "simple_Twist": 29.732, "simple_hRise": 3.149, "simple_hTwist": 29.980 }, { "index": 13, "nt1": "///A/197", "nt2": "///A/204", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 10, "num_stems": 1, "strand1": "AGC", "strand2": "GCG", "bp_type": ".||", "helix_form": "xA", "helical_rise": 4.276, "helical_rise_std": 0.589, "helical_radius": 8.833, "helical_radius_std": 2.584, "helical_axis": [ 0.199, -0.506, -0.839 ], "point1": [ 158.270, 245.145, 154.407 ], "point2": [ 160.047, 240.623, 146.916 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/225", "nt2": "///A/235", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": ".HS", "DSSR": ".M-m", "bp1_params": [ -6.167, -3.365, 2.187, -16.410, -15.008, 22.675 ], "step_params": [ -0.377, 0.869, 3.385, -4.901, 26.875, 54.585 ], "heli_params": [ -0.594, 0.108, 3.462, 27.470, 5.010, 60.567 ], "bp2_params": [ -0.251, -0.178, 0.024, -10.877, -8.155, -0.644 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.385, "simple_Twist": 10.693, "simple_hRise": 2.105, "simple_hTwist": 29.299 }, { "index": 2, "nt1": "///A/227", "nt2": "///A/234", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.251, -0.178, 0.024, -10.877, -8.155, -0.644 ], "step_params": [ -0.306, -1.623, 3.538, -2.444, -2.011, 23.311 ], "heli_params": [ -3.232, -0.159, 3.675, -4.948, 6.013, 23.522 ], "bp2_params": [ 0.105, -0.205, -0.267, -8.751, -7.565, 3.559 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.538, "simple_Twist": 20.904, "simple_hRise": 3.687, "simple_hTwist": 21.139 }, { "index": 3, "nt1": "///A/228", "nt2": "///A/233", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 11, "num_stems": 2, "strand1": "AUUCCCGAUAGCG", "strand2": "AAAGGGAAAGCGA", "bp_type": "..||||....||.", "helix_form": ".xA.Ax.x..A.", "helical_rise": 3.527, "helical_rise_std": 1.247, "helical_radius": 8.833, "helical_radius_std": 2.765, "helical_axis": [ 0.484, -0.769, -0.417 ], "point1": [ 146.967, 238.140, 163.518 ], "point2": [ 167.593, 205.323, 145.712 ], "num_pairs": 13, "pairs": [ { "index": 1, "nt1": "///A/236", "nt2": "///A/476", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "bp1_params": [ -1.714, -2.515, -0.238, -3.732, -9.629, 170.792 ], "step_params": [ -1.695, 1.414, 3.385, 7.428, 5.656, -148.562 ], "heli_params": [ -0.759, -0.848, 3.395, -2.937, 3.857, -148.669 ], "bp2_params": [ -0.207, -1.142, 0.618, 8.811, -4.238, -169.610 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.385, "simple_Twist": 19.985, "simple_hRise": 2.867, "simple_hTwist": 22.038 }, { "index": 2, "nt1": "///A/237", "nt2": "///A/477", "bp": "U+A", "name": "rWC", "Saenger": "21-XXI", "LW": "tWW", "DSSR": "tW+W", "bp1_params": [ -0.207, -1.142, 0.618, 8.811, -4.238, -169.610 ], "step_params": [ 0.783, -3.984, 2.832, 0.964, 1.417, -34.962 ], "heli_params": [ 6.434, 1.430, 2.964, -2.358, 1.603, -35.002 ], "bp2_params": [ -0.125, -0.332, 1.194, 5.661, 2.408, 0.548 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.832, "simple_Twist": 35.803, "simple_hRise": 2.697, "simple_hTwist": 35.843 }, { "index": 3, "nt1": "///A/238", "nt2": "///A/265", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.125, -0.332, 1.194, 5.661, 2.408, 0.548 ], "step_params": [ 0.246, -1.827, 2.892, 5.582, 6.341, 36.822 ], "heli_params": [ -3.515, 0.228, 2.563, 9.880, -8.697, 37.746 ], "bp2_params": [ 0.143, -0.222, 0.580, 7.465, -0.787, -0.196 ], "groove_widths": [ 18.021, null, 17.155, null ], "simple_Rise": 2.892, "simple_Twist": 35.134, "simple_hRise": 2.543, "simple_hTwist": 36.104 }, { "index": 4, "nt1": "///A/239", "nt2": "///A/264", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.143, -0.222, 0.580, 7.465, -0.787, -0.196 ], "step_params": [ -0.713, -2.736, 2.971, -5.748, 5.555, 29.283 ], "heli_params": [ -6.184, 0.375, 2.513, 10.739, 11.110, 30.331 ], "bp2_params": [ 0.172, -0.240, 0.665, 7.815, -0.969, 1.447 ], "groove_widths": [ 19.641, 14.088, 16.766, 11.631 ], "simple_Rise": 2.971, "simple_Twist": 29.188, "simple_hRise": 2.511, "simple_hTwist": 30.240 }, { "index": 5, "nt1": "///A/240", "nt2": "///A/263", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.172, -0.240, 0.665, 7.815, -0.969, 1.447 ], "step_params": [ -0.131, -2.105, 2.997, 2.392, 5.989, 33.899 ], "heli_params": [ -4.350, 0.541, 2.584, 10.158, -4.058, 34.490 ], "bp2_params": [ 0.170, -0.151, -0.148, 15.716, 13.199, 1.465 ], "groove_widths": [ 21.020, 12.572, 11.948, 11.172 ], "simple_Rise": 2.997, "simple_Twist": 33.769, "simple_hRise": 2.582, "simple_hTwist": 34.361 }, { "index": 6, "nt1": "///A/241", "nt2": "///A/262", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.170, -0.151, -0.148, 15.716, 13.199, 1.465 ], "step_params": [ -0.242, -1.962, 7.414, 31.682, 9.511, 91.304 ], "heli_params": [ -1.701, 1.426, 6.929, 6.484, -21.599, 95.852 ], "bp2_params": [ 6.293, -3.951, -1.728, 3.153, -4.646, -5.713 ], "groove_widths": [ 23.249, 13.470, 11.331, 11.267 ], "simple_Rise": 7.414, "simple_Twist": 50.765, "simple_hRise": 5.948, "simple_hTwist": 59.986 }, { "index": 7, "nt1": "///A/243", "nt2": "///A/260", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.293, -3.951, -1.728, 3.153, -4.646, -5.713 ], "step_params": [ 1.401, 0.769, 3.028, 0.311, -3.760, -58.287 ], "heli_params": [ -0.605, 1.451, 3.061, 3.856, 0.319, -58.399 ], "bp2_params": [ -6.205, 5.191, 1.913, -13.852, 7.125, -163.822 ], "groove_widths": [ 24.487, 20.375, 13.658, 12.334 ], "simple_Rise": 3.028, "simple_Twist": 6.769, "simple_hRise": 2.329, "simple_hTwist": 7.749 }, { "index": 8, "nt1": "///A/244", "nt2": "///A/259", "bp": "A+A", "name": "--", "Saenger": "02-II", "LW": "tHH", "DSSR": "tM+M", "bp1_params": [ -6.205, 5.191, 1.913, -13.852, 7.125, -163.822 ], "step_params": [ -0.069, -0.295, 3.886, -3.834, 4.754, 87.537 ], "heli_params": [ -0.334, -0.048, 3.870, 3.433, 2.769, 87.707 ], "bp2_params": [ 4.492, -2.500, -0.064, 8.928, -1.922, -96.568 ], "groove_widths": [ 20.735, 19.451, 17.741, 17.327 ], "simple_Rise": 3.886, "simple_Twist": 35.859, "simple_hRise": 3.804, "simple_hTwist": 36.359 }, { "index": 9, "nt1": "///A/246", "nt2": "///A/258", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 4.492, -2.500, -0.064, 8.928, -1.922, -96.568 ], "step_params": [ 4.923, -1.428, 3.289, -0.336, 0.257, -11.105 ], "heli_params": [ 6.972, 24.896, 3.468, -1.328, -1.736, -11.113 ], "bp2_params": [ -6.789, -4.050, 0.147, 1.474, 1.352, -10.790 ], "groove_widths": [ 17.544, 16.349, 18.831, 16.147 ], "simple_Rise": 3.289, "simple_Twist": 61.069, "simple_hRise": 3.259, "simple_hTwist": 61.070 }, { "index": 10, "nt1": "///A/247", "nt2": "///A/257", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.789, -4.050, 0.147, 1.474, 1.352, -10.790 ], "step_params": [ 1.215, -1.026, 3.272, -4.819, 4.196, 58.833 ], "heli_params": [ -1.248, -1.470, 3.100, 4.258, 4.890, 59.148 ], "bp2_params": [ -0.215, -0.171, 0.502, 1.989, 5.277, 2.891 ], "groove_widths": [ 17.258, null, 12.737, null ], "simple_Rise": 3.272, "simple_Twist": 16.345, "simple_hRise": 2.476, "simple_hTwist": 17.542 }, { "index": 11, "nt1": "///A/248", "nt2": "///A/256", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.215, -0.171, 0.502, 1.989, 5.277, 2.891 ], "step_params": [ 0.062, -1.729, 3.292, 0.779, 0.860, 36.299 ], "heli_params": [ -2.894, 0.009, 3.252, 1.380, -1.250, 36.316 ], "bp2_params": [ 0.217, -0.198, 0.565, 5.370, 4.589, 3.164 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.292, "simple_Twist": 33.759, "simple_hRise": 3.249, "simple_hTwist": 33.779 }, { "index": 12, "nt1": "///A/249", "nt2": "///A/255", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.217, -0.198, 0.565, 5.370, 4.589, 3.164 ], "step_params": [ -1.616, -1.246, 2.519, -1.191, 17.611, 50.141 ], "heli_params": [ -2.212, 1.757, 2.040, 20.078, 1.358, 52.967 ], "bp2_params": [ 5.409, -3.581, 1.654, 25.244, 25.534, 0.399 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.519, "simple_Twist": 12.036, "simple_hRise": 0.492, "simple_hTwist": 21.337 }, { "index": 13, "nt1": "///A/250", "nt2": "///A/254", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 12, "num_stems": 3, "strand1": "AGCCCAACCAAGAGG", "strand2": "ACGGGUGGGUUCUCC", "bp_type": ".||||..||||.|||", "helix_form": "x.AxxxxA.A....", "helical_rise": 3.225, "helical_rise_std": 1.756, "helical_radius": 9.552, "helical_radius_std": 2.813, "helical_axis": [ 0.541, 0.825, 0.161 ], "point1": [ 157.062, 242.409, 168.790 ], "point2": [ 181.237, 279.249, 175.986 ], "num_pairs": 15, "pairs": [ { "index": 1, "nt1": "///A/268", "nt2": "///A/224", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ 3.056, -6.766, 2.064, -53.402, 20.253, 92.139 ], "step_params": [ 5.557, 0.230, 5.352, -6.803, 9.282, 86.806 ], "heli_params": [ -0.153, -4.255, 4.995, 6.729, 4.932, 87.415 ], "bp2_params": [ -0.101, -0.430, -1.514, -14.086, -2.845, -0.214 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 5.352, "simple_Twist": -68.329, "simple_hRise": 5.747, "simple_hTwist": -69.175 }, { "index": 2, "nt1": "///A/269", "nt2": "///A/473", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.101, -0.430, -1.514, -14.086, -2.845, -0.214 ], "step_params": [ 1.196, -1.663, 3.081, -1.102, 2.074, 22.517 ], "heli_params": [ -4.923, -3.411, 2.857, 5.293, 2.813, 22.638 ], "bp2_params": [ 0.167, -0.279, -0.840, -3.157, 1.292, -1.101 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.081, "simple_Twist": 21.013, "simple_hRise": 2.839, "simple_hTwist": 21.142 }, { "index": 3, "nt1": "///A/270", "nt2": "///A/472", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.167, -0.279, -0.840, -3.157, 1.292, -1.101 ], "step_params": [ 0.317, -2.164, 3.506, -5.763, -2.124, 33.079 ], "heli_params": [ -3.363, -1.569, 3.530, -3.691, 10.015, 33.629 ], "bp2_params": [ 0.161, -0.183, 0.304, 0.415, 7.512, 0.671 ], "groove_widths": [ 17.281, null, 26.578, null ], "simple_Rise": 3.506, "simple_Twist": 32.800, "simple_hRise": 3.530, "simple_hTwist": 33.354 }, { "index": 4, "nt1": "///A/271", "nt2": "///A/471", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.161, -0.183, 0.304, 0.415, 7.512, 0.671 ], "step_params": [ 0.448, -3.711, 2.706, -6.621, 10.278, 25.699 ], "heli_params": [ -8.980, -1.826, 1.029, 21.618, 13.925, 28.415 ], "bp2_params": [ 0.132, -0.338, 0.870, 4.159, -6.257, -2.263 ], "groove_widths": [ 18.127, 13.603, 12.181, 10.376 ], "simple_Rise": 2.706, "simple_Twist": 25.885, "simple_hRise": 1.041, "simple_hTwist": 28.582 }, { "index": 5, "nt1": "///A/272", "nt2": "///A/417", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.132, -0.338, 0.870, 4.159, -6.257, -2.263 ], "step_params": [ -0.743, -0.046, 3.491, 14.206, -3.647, 81.418 ], "heli_params": [ 0.060, 0.934, 3.349, -2.776, -10.812, 82.501 ], "bp2_params": [ -4.259, -2.466, 0.110, -15.758, 20.412, -104.868 ], "groove_widths": [ 20.554, 8.821, 11.230, 10.618 ], "simple_Rise": 3.491, "simple_Twist": 111.548, "simple_hRise": 3.416, "simple_hTwist": 112.184 }, { "index": 6, "nt1": "///A/273", "nt2": "///A/298", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.259, -2.466, 0.110, -15.758, 20.412, -104.868 ], "step_params": [ 5.004, -1.746, 5.159, -19.570, 38.955, 37.375 ], "heli_params": [ -4.248, -6.471, 0.660, 45.839, 23.029, 56.823 ], "bp2_params": [ -5.956, -2.055, -2.416, 1.256, 39.488, 46.353 ], "groove_widths": [ 21.090, 7.547, 9.655, 8.214 ], "simple_Rise": 5.159, "simple_Twist": 53.441, "simple_hRise": 1.892, "simple_hTwist": 67.936 }, { "index": 7, "nt1": "///A/275", "nt2": "///A/297", "bp": "A-G", "name": "--", "Saenger": "--", "LW": ".WS", "DSSR": ".W-m", "bp1_params": [ -5.956, -2.055, -2.416, 1.256, 39.488, 46.353 ], "step_params": [ 0.589, 0.713, 7.088, -26.389, 4.940, 73.571 ], "heli_params": [ 0.263, -2.101, 6.636, 3.998, 21.360, 77.662 ], "bp2_params": [ 0.232, -0.239, 0.770, 2.175, 2.260, 1.480 ], "groove_widths": [ 21.050, 14.447, 9.885, 9.849 ], "simple_Rise": 7.088, "simple_Twist": 27.486, "simple_hRise": 4.832, "simple_hTwist": 38.240 }, { "index": 8, "nt1": "///A/276", "nt2": "///A/295", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.232, -0.239, 0.770, 2.175, 2.260, 1.480 ], "step_params": [ 0.184, -2.025, 2.880, 7.977, 9.187, 29.869 ], "heli_params": [ -4.964, 0.807, 2.156, 16.965, -14.731, 32.200 ], "bp2_params": [ 0.154, -0.152, 0.187, 0.320, -8.505, 0.160 ], "groove_widths": [ 20.730, 16.027, 14.994, 11.769 ], "simple_Rise": 2.880, "simple_Twist": 29.735, "simple_hRise": 2.152, "simple_hTwist": 32.076 }, { "index": 9, "nt1": "///A/277", "nt2": "///A/294", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.154, -0.152, 0.187, 0.320, -8.505, 0.160 ], "step_params": [ -0.089, -1.655, 3.127, 6.835, 18.372, 36.369 ], "heli_params": [ -4.036, 0.752, 2.048, 27.149, -10.100, 41.157 ], "bp2_params": [ 0.076, -0.216, -0.768, -6.595, 5.282, -3.019 ], "groove_widths": [ 19.122, 14.881, 19.189, 18.249 ], "simple_Rise": 3.127, "simple_Twist": 36.839, "simple_hRise": 2.064, "simple_hTwist": 41.569 }, { "index": 10, "nt1": "///A/278", "nt2": "///A/293", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.076, -0.216, -0.768, -6.595, 5.282, -3.019 ], "step_params": [ -0.011, -1.454, 2.856, -2.318, 5.112, 28.032 ], "heli_params": [ -3.914, -0.418, 2.548, 10.421, 4.726, 28.578 ], "bp2_params": [ 0.084, -0.251, -0.599, 4.173, 10.845, -1.551 ], "groove_widths": [ 17.497, 16.019, 18.289, 16.170 ], "simple_Rise": 2.856, "simple_Twist": 28.108, "simple_hRise": 2.549, "simple_hTwist": 28.652 }, { "index": 11, "nt1": "///A/279", "nt2": "///A/292", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.084, -0.251, -0.599, 4.173, 10.845, -1.551 ], "step_params": [ 0.151, 0.051, 4.105, 9.672, 17.780, 24.123 ], "heli_params": [ -4.181, 2.047, 3.245, 35.579, -19.356, 31.392 ], "bp2_params": [ -0.041, -2.569, -2.602, -6.680, -7.815, 11.132 ], "groove_widths": [ 16.573, 14.902, 19.094, 17.522 ], "simple_Rise": 4.105, "simple_Twist": 25.073, "simple_hRise": 3.293, "simple_hTwist": 32.121 }, { "index": 12, "nt1": "///A/280", "nt2": "///A/291", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.041, -2.569, -2.602, -6.680, -7.815, 11.132 ], "step_params": [ 0.685, -1.374, 4.234, 9.530, 4.024, 35.058 ], "heli_params": [ -2.917, 0.621, 4.098, 6.507, -15.411, 36.506 ], "bp2_params": [ 0.046, -0.329, -0.429, 0.471, 5.919, 7.064 ], "groove_widths": [ 14.825, null, 16.499, null ], "simple_Rise": 4.234, "simple_Twist": 34.545, "simple_hRise": 4.094, "simple_hTwist": 36.015 }, { "index": 13, "nt1": "///A/281", "nt2": "///A/290", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.046, -0.329, -0.429, 0.471, 5.919, 7.064 ], "step_params": [ -0.551, -0.752, 3.067, 0.819, 2.520, 27.706 ], "heli_params": [ -2.122, 1.326, 2.970, 5.246, -1.705, 27.830 ], "bp2_params": [ -0.052, -0.294, -0.641, 3.534, 2.338, -4.391 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.067, "simple_Twist": 28.358, "simple_hRise": 2.973, "simple_hTwist": 28.479 }, { "index": 14, "nt1": "///A/282", "nt2": "///A/289", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.052, -0.294, -0.641, 3.534, 2.338, -4.391 ], "step_params": [ 1.722, -0.088, 3.182, -1.623, 3.575, 31.393 ], "heli_params": [ -0.795, -3.447, 3.063, 6.575, 2.984, 31.632 ], "bp2_params": [ -0.084, -0.423, -1.048, 9.833, -3.333, 1.103 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.182, "simple_Twist": 31.571, "simple_hRise": 3.064, "simple_hTwist": 31.808 }, { "index": 15, "nt1": "///A/283", "nt2": "///A/288", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 13, "num_stems": 3, "strand1": "GGAGGGAACGAGGUA", "strand2": "CCUCUCUUGCUUCAA", "bp_type": "|||||||||||.||.", "helix_form": "AAAx.AA..A..Ax", "helical_rise": 2.989, "helical_rise_std": 0.707, "helical_radius": 9.223, "helical_radius_std": 2.281, "helical_axis": [ -0.494, -0.775, 0.394 ], "point1": [ 147.442, 266.184, 180.725 ], "point2": [ 126.799, 233.782, 197.199 ], "num_pairs": 15, "pairs": [ { "index": 1, "nt1": "///A/316", "nt2": "///A/404", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.143, -0.361, -1.148, -13.868, -1.889, -0.725 ], "step_params": [ 0.172, -1.278, 3.093, -2.968, 2.199, 28.678 ], "heli_params": [ -3.013, -0.955, 2.956, 4.416, 5.961, 28.910 ], "bp2_params": [ -0.111, -0.183, -0.685, -9.164, 4.334, -0.026 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.093, "simple_Twist": 28.717, "simple_hRise": 2.956, "simple_hTwist": 28.949 }, { "index": 2, "nt1": "///A/317", "nt2": "///A/403", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.111, -0.183, -0.685, -9.164, 4.334, -0.026 ], "step_params": [ 0.203, -1.320, 2.975, -2.988, 5.781, 33.586 ], "heli_params": [ -3.043, -0.757, 2.690, 9.889, 5.111, 34.193 ], "bp2_params": [ 0.063, -0.167, -0.345, -0.156, 6.229, 2.421 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.975, "simple_Twist": 32.385, "simple_hRise": 2.677, "simple_hTwist": 33.015 }, { "index": 3, "nt1": "///A/318", "nt2": "///A/402", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.063, -0.167, -0.345, -0.156, 6.229, 2.421 ], "step_params": [ 0.082, -1.359, 2.925, 1.312, 4.899, 31.615 ], "heli_params": [ -3.229, 0.055, 2.690, 8.920, -2.389, 32.009 ], "bp2_params": [ -0.144, -0.187, -0.351, 10.652, 3.265, -1.479 ], "groove_widths": [ 17.053, null, 13.057, null ], "simple_Rise": 2.925, "simple_Twist": 32.935, "simple_hRise": 2.701, "simple_hTwist": 33.312 }, { "index": 4, "nt1": "///A/319", "nt2": "///A/401", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.144, -0.187, -0.351, 10.652, 3.265, -1.479 ], "step_params": [ -3.239, -2.131, 4.173, 3.633, -0.372, 67.383 ], "heli_params": [ -1.901, 3.091, 4.025, -0.335, -3.272, 67.471 ], "bp2_params": [ -1.535, -0.534, 0.261, -3.892, -5.133, 13.807 ], "groove_widths": [ 15.998, 12.880, 12.364, 11.912 ], "simple_Rise": 4.173, "simple_Twist": 75.527, "simple_hRise": 4.046, "simple_hTwist": 75.602 }, { "index": 5, "nt1": "///A/327", "nt2": "///A/400", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.535, -0.534, 0.261, -3.892, -5.133, 13.807 ], "step_params": [ -0.776, -1.405, 3.163, 3.387, 0.289, 33.109 ], "heli_params": [ -2.499, 1.893, 3.059, 0.506, -5.924, 33.279 ], "bp2_params": [ -0.205, -0.168, -0.104, -3.033, -1.762, -0.037 ], "groove_widths": [ 15.668, 13.889, 11.952, 11.854 ], "simple_Rise": 3.163, "simple_Twist": 25.022, "simple_hRise": 3.017, "simple_hTwist": 25.248 }, { "index": 6, "nt1": "///A/328", "nt2": "///A/399", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.205, -0.168, -0.104, -3.033, -1.762, -0.037 ], "step_params": [ -0.097, -1.845, 3.218, 0.702, -0.499, 32.824 ], "heli_params": [ -3.179, 0.291, 3.242, -0.882, -1.242, 32.835 ], "bp2_params": [ -0.013, -0.169, -0.263, -4.224, 0.039, 1.620 ], "groove_widths": [ 15.664, 14.293, 20.396, 17.805 ], "simple_Rise": 3.218, "simple_Twist": 31.655, "simple_hRise": 3.243, "simple_hTwist": 31.667 }, { "index": 7, "nt1": "///A/329", "nt2": "///A/398", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.013, -0.169, -0.263, -4.224, 0.039, 1.620 ], "step_params": [ -0.350, -1.641, 3.389, -0.096, 1.252, 31.620 ], "heli_params": [ -3.247, 0.624, 3.324, 2.297, 0.176, 31.644 ], "bp2_params": [ -0.043, -0.149, 0.319, -1.258, 0.587, -1.550 ], "groove_widths": [ 16.333, 14.593, 18.322, 18.136 ], "simple_Rise": 3.389, "simple_Twist": 31.542, "simple_hRise": 3.324, "simple_hTwist": 31.567 }, { "index": 8, "nt1": "///A/330", "nt2": "///A/397", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.043, -0.149, 0.319, -1.258, 0.587, -1.550 ], "step_params": [ 0.425, -2.040, 3.131, 0.929, 1.881, 36.538 ], "heli_params": [ -3.492, -0.557, 3.035, 2.997, -1.480, 36.596 ], "bp2_params": [ 0.131, -0.215, 0.378, 1.814, 0.306, 0.638 ], "groove_widths": [ 17.256, 15.463, 16.961, 15.506 ], "simple_Rise": 3.131, "simple_Twist": 35.702, "simple_hRise": 3.033, "simple_hTwist": 35.761 }, { "index": 9, "nt1": "///A/331", "nt2": "///A/396", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.131, -0.215, 0.378, 1.814, 0.306, 0.638 ], "step_params": [ -0.317, -1.673, 3.050, 4.553, 22.728, 33.301 ], "heli_params": [ -4.428, 0.861, 1.582, 34.900, -6.992, 40.386 ], "bp2_params": [ -0.177, -0.154, -0.393, -7.198, -6.268, 0.770 ], "groove_widths": [ 17.386, 15.755, 16.981, 14.760 ], "simple_Rise": 3.050, "simple_Twist": 35.497, "simple_hRise": 1.678, "simple_hTwist": 42.190 }, { "index": 10, "nt1": "///A/332", "nt2": "///A/395", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.177, -0.154, -0.393, -7.198, -6.268, 0.770 ], "step_params": [ -0.435, -1.547, 3.686, -1.471, -0.779, 27.418 ], "heli_params": [ -3.040, 0.504, 3.745, -1.641, 3.101, 27.468 ], "bp2_params": [ 0.088, -0.289, -1.051, -9.759, -2.179, 3.146 ], "groove_widths": [ 17.114, 15.482, 19.708, 17.351 ], "simple_Rise": 3.686, "simple_Twist": 25.672, "simple_hRise": 3.749, "simple_hTwist": 25.725 }, { "index": 11, "nt1": "///A/333", "nt2": "///A/394", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.088, -0.289, -1.051, -9.759, -2.179, 3.146 ], "step_params": [ 1.336, -1.922, 3.267, -7.684, 11.382, 14.830 ], "heli_params": [ -9.252, -6.356, 0.823, 35.653, 24.070, 20.186 ], "bp2_params": [ -3.687, -1.100, -0.755, -7.016, -3.568, 5.625 ], "groove_widths": [ 16.868, 15.343, 17.956, 16.594 ], "simple_Rise": 3.267, "simple_Twist": 36.639, "simple_hRise": 2.278, "simple_hTwist": 39.045 }, { "index": 12, "nt1": "///A/334", "nt2": "///A/393", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -3.687, -1.100, -0.755, -7.016, -3.568, 5.625 ], "step_params": [ -0.648, -1.559, 3.238, -0.914, 2.132, 47.042 ], "heli_params": [ -2.123, 0.738, 3.180, 2.669, 1.144, 47.095 ], "bp2_params": [ -0.152, -0.195, -0.627, -5.992, 3.198, 0.316 ], "groove_widths": [ 18.268, null, 17.341, null ], "simple_Rise": 3.238, "simple_Twist": 26.984, "simple_hRise": 3.128, "simple_hTwist": 27.082 }, { "index": 13, "nt1": "///A/335", "nt2": "///A/392", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.152, -0.195, -0.627, -5.992, 3.198, 0.316 ], "step_params": [ 0.581, -1.410, 3.310, -1.189, 1.019, 30.122 ], "heli_params": [ -2.917, -1.359, 3.237, 1.959, 2.286, 30.161 ], "bp2_params": [ -0.013, -0.089, 0.020, 3.185, 4.181, 2.309 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.310, "simple_Twist": 29.189, "simple_hRise": 3.234, "simple_hTwist": 29.230 }, { "index": 14, "nt1": "///A/336", "nt2": "///A/391", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.013, -0.089, 0.020, 3.185, 4.181, 2.309 ], "step_params": [ -0.774, -0.236, 3.239, -9.942, 3.315, -123.213 ], "heli_params": [ 0.105, -0.525, 3.202, -1.883, -5.646, -123.472 ], "bp2_params": [ 6.652, -0.448, -0.956, 20.621, -8.403, -2.645 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.239, "simple_Twist": -30.488, "simple_hRise": 2.861, "simple_hTwist": -32.199 }, { "index": 15, "nt1": "///A/389", "nt2": "///A/390", "bp": "A+A", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M" } ] }, { "index": 14, "num_stems": 2, "strand1": "GAUGAGAGGU", "strand2": "CUGAUGUCCA", "bp_type": "|||...|||.", "helix_form": "....x.AAx", "helical_rise": 3.092, "helical_rise_std": 1.063, "helical_radius": 8.703, "helical_radius_std": 2.847, "helical_axis": [ -0.092, -0.985, 0.147 ], "point1": [ 116.695, 227.704, 192.911 ], "point2": [ 114.131, 200.255, 197.022 ], "num_pairs": 10, "pairs": [ { "index": 1, "nt1": "///A/338", "nt2": "///A/387", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.198, -0.180, -0.351, -1.703, -2.841, -1.353 ], "step_params": [ -1.046, -2.293, 3.803, -5.013, 1.323, 30.401 ], "heli_params": [ -4.616, 0.822, 3.821, 2.499, 9.472, 30.829 ], "bp2_params": [ 0.158, -0.145, -0.827, -8.991, -0.363, -6.187 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.803, "simple_Twist": 28.547, "simple_hRise": 3.819, "simple_hTwist": 29.004 }, { "index": 2, "nt1": "///A/339", "nt2": "///A/386", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.158, -0.145, -0.827, -8.991, -0.363, -6.187 ], "step_params": [ -0.399, -1.233, 3.109, -3.763, 2.470, 37.849 ], "heli_params": [ -2.184, 0.160, 3.049, 3.791, 5.776, 38.106 ], "bp2_params": [ 1.898, -0.540, -0.106, 0.417, 1.784, -2.840 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.109, "simple_Twist": 28.471, "simple_hRise": 3.019, "simple_hTwist": 28.817 }, { "index": 3, "nt1": "///A/340", "nt2": "///A/385", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.898, -0.540, -0.106, 0.417, 1.784, -2.840 ], "step_params": [ -0.388, -0.788, 3.286, 0.311, 3.212, 51.594 ], "heli_params": [ -1.120, 0.466, 3.233, 3.686, -0.357, 51.688 ], "bp2_params": [ 6.789, -4.278, 0.539, 4.829, -3.249, -2.720 ], "groove_widths": [ 18.049, null, 9.948, null ], "simple_Rise": 3.286, "simple_Twist": 16.137, "simple_hRise": 3.063, "simple_hTwist": 16.454 }, { "index": 4, "nt1": "///A/341", "nt2": "///A/384", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.789, -4.278, 0.539, 4.829, -3.249, -2.720 ], "step_params": [ -3.538, -0.153, 5.500, 15.393, 12.919, 11.699 ], "heli_params": [ -5.739, 15.176, 0.363, 38.633, -46.029, 23.223 ], "bp2_params": [ -1.529, 0.820, 0.684, -9.760, -24.017, -69.445 ], "groove_widths": [ 17.486, 9.767, 8.839, 8.618 ], "simple_Rise": 5.500, "simple_Twist": 64.364, "simple_hRise": 4.549, "simple_hTwist": 67.105 }, { "index": 5, "nt1": "///A/342", "nt2": "///A/383", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "..W", "DSSR": "..-W", "bp1_params": [ -1.529, 0.820, 0.684, -9.760, -24.017, -69.445 ], "step_params": [ -1.392, -6.597, 2.508, 6.304, -0.550, 73.765 ], "heli_params": [ -5.468, 1.307, 2.442, -0.458, -5.242, 73.997 ], "bp2_params": [ -6.915, -3.983, 0.242, -12.959, -3.769, -6.796 ], "groove_widths": [ 16.229, 11.457, 10.449, 10.448 ], "simple_Rise": 2.508, "simple_Twist": 111.221, "simple_hRise": 2.476, "simple_hTwist": 111.341 }, { "index": 6, "nt1": "///A/368", "nt2": "///A/382", "bp": "G-G", "name": "~Sheared", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.915, -3.983, 0.242, -12.959, -3.769, -6.796 ], "step_params": [ -0.724, -1.424, 3.001, -2.102, 7.797, 50.421 ], "heli_params": [ -2.137, 0.710, 2.793, 9.085, 2.449, 51.021 ], "bp2_params": [ -0.030, -0.048, 0.155, -7.623, -3.698, -2.535 ], "groove_widths": [ 16.909, 14.780, 10.789, 10.695 ], "simple_Rise": 3.001, "simple_Twist": 5.648, "simple_hRise": 0.750, "simple_hTwist": 9.851 }, { "index": 7, "nt1": "///A/369", "nt2": "///A/381", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.030, -0.048, 0.155, -7.623, -3.698, -2.535 ], "step_params": [ -0.620, -1.629, 3.677, -0.433, 1.721, 30.652 ], "heli_params": [ -3.453, 1.077, 3.590, 3.252, 0.818, 30.702 ], "bp2_params": [ -0.184, -0.208, -0.612, -7.651, 0.029, 0.721 ], "groove_widths": [ 17.269, null, 17.962, null ], "simple_Rise": 3.677, "simple_Twist": 32.033, "simple_hRise": 3.594, "simple_hTwist": 32.080 }, { "index": 8, "nt1": "///A/370", "nt2": "///A/380", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.184, -0.208, -0.612, -7.651, 0.029, 0.721 ], "step_params": [ 0.144, -1.710, 3.291, -1.153, 3.475, 30.583 ], "heli_params": [ -3.882, -0.490, 3.075, 6.558, 2.176, 30.796 ], "bp2_params": [ -0.139, -0.233, -0.807, -4.831, 1.556, -2.830 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.291, "simple_Twist": 30.169, "simple_hRise": 3.071, "simple_hTwist": 30.385 }, { "index": 9, "nt1": "///A/371", "nt2": "///A/379", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.139, -0.233, -0.807, -4.831, 1.556, -2.830 ], "step_params": [ -1.771, -2.054, 3.177, 7.433, 4.198, 90.087 ], "heli_params": [ -1.527, 1.388, 2.980, 2.961, -5.243, 90.404 ], "bp2_params": [ 3.516, -1.278, -0.998, -5.314, 0.337, -101.575 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.177, "simple_Twist": 68.672, "simple_hRise": 2.882, "simple_hTwist": 69.136 }, { "index": 10, "nt1": "///A/372", "nt2": "///A/376", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M" } ] }, { "index": 15, "num_stems": 2, "strand1": "GGCGGGUCUGG", "strand2": "CCGCCCGGAAA", "bp_type": "||||||||...", "helix_form": "xAxxA..xx.", "helical_rise": 2.967, "helical_rise_std": 0.822, "helical_radius": 9.406, "helical_radius_std": 3.142, "helical_axis": [ 0.188, -0.657, 0.730 ], "point1": [ 102.626, 204.554, 184.071 ], "point2": [ 108.186, 185.086, 205.687 ], "num_pairs": 11, "pairs": [ { "index": 1, "nt1": "///A/367", "nt2": "///A/363", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.172, -0.176, 0.497, 3.358, -3.911, -1.034 ], "step_params": [ 1.298, -2.410, 3.538, 8.111, 5.679, 25.835 ], "heli_params": [ -6.516, -0.616, 3.199, 12.148, -17.350, 27.638 ], "bp2_params": [ -0.210, -0.242, -0.740, -3.763, -0.977, -0.582 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.538, "simple_Twist": 25.835, "simple_hRise": 3.199, "simple_hTwist": 27.637 }, { "index": 2, "nt1": "///A/377", "nt2": "///A/362", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.210, -0.242, -0.740, -3.763, -0.977, -0.582 ], "step_params": [ -0.424, -1.473, 2.938, -1.440, 2.171, 41.653 ], "heli_params": [ -2.271, 0.461, 2.874, 3.050, 2.023, 41.731 ], "bp2_params": [ 0.199, -0.230, -0.589, 4.457, -0.476, -1.532 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.938, "simple_Twist": 39.851, "simple_hRise": 2.870, "simple_hTwist": 39.933 }, { "index": 3, "nt1": "///A/378", "nt2": "///A/361", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.199, -0.230, -0.589, 4.457, -0.476, -1.532 ], "step_params": [ -1.008, -2.728, 3.895, 3.556, 17.787, 24.866 ], "heli_params": [ -8.358, 2.545, 1.497, 35.845, -7.167, 30.694 ], "bp2_params": [ -0.206, -0.357, -1.049, -6.790, -3.589, -1.142 ], "groove_widths": [ 17.146, null, 18.744, null ], "simple_Rise": 3.895, "simple_Twist": 26.731, "simple_hRise": 1.657, "simple_hTwist": 32.211 }, { "index": 4, "nt1": "///A/344", "nt2": "///A/360", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.206, -0.357, -1.049, -6.790, -3.589, -1.142 ], "step_params": [ -0.698, -2.959, 3.450, -16.550, -7.569, 23.036 ], "heli_params": [ -3.792, -3.128, 3.869, -16.109, 35.225, 29.281 ], "bp2_params": [ -0.231, -0.365, 0.811, -4.570, 1.504, -0.190 ], "groove_widths": [ 16.773, 15.326, 19.640, 9.975 ], "simple_Rise": 3.450, "simple_Twist": 23.094, "simple_hRise": 3.870, "simple_hTwist": 29.327 }, { "index": 5, "nt1": "///A/346", "nt2": "///A/359", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.231, -0.365, 0.811, -4.570, 1.504, -0.190 ], "step_params": [ -0.107, -1.604, 3.026, 0.975, 4.555, 32.942 ], "heli_params": [ -3.482, 0.332, 2.782, 7.982, -1.709, 33.260 ], "bp2_params": [ -0.218, -0.245, 0.637, 0.155, 3.700, 0.420 ], "groove_widths": [ 17.322, 15.794, 21.311, 18.050 ], "simple_Rise": 3.026, "simple_Twist": 33.038, "simple_hRise": 2.782, "simple_hTwist": 33.355 }, { "index": 6, "nt1": "///A/347", "nt2": "///A/358", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.218, -0.245, 0.637, 0.155, 3.700, 0.420 ], "step_params": [ 0.662, -1.523, 3.087, 5.879, 1.880, 43.433 ], "heli_params": [ -2.209, -0.357, 3.081, 2.525, -7.897, 43.848 ], "bp2_params": [ 1.992, -0.519, 0.097, 4.447, 1.207, -3.875 ], "groove_widths": [ 17.497, 15.495, 11.299, 10.271 ], "simple_Rise": 3.087, "simple_Twist": 31.678, "simple_hRise": 3.064, "simple_hTwist": 32.259 }, { "index": 7, "nt1": "///A/348", "nt2": "///A/357", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.992, -0.519, 0.097, 4.447, 1.207, -3.875 ], "step_params": [ -0.395, -2.643, 3.612, 7.409, 24.423, 37.146 ], "heli_params": [ -5.412, 1.108, 1.566, 33.890, -10.280, 44.812 ], "bp2_params": [ 0.150, -0.342, 0.601, -28.595, 4.563, -12.334 ], "groove_widths": [ 17.891, 15.793, 12.786, 11.042 ], "simple_Rise": 3.612, "simple_Twist": 47.219, "simple_hRise": 2.031, "simple_hTwist": 53.325 }, { "index": 8, "nt1": "///A/349", "nt2": "///A/356", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.150, -0.342, 0.601, -28.595, 4.563, -12.334 ], "step_params": [ -3.067, -0.976, 2.412, 2.514, -3.206, 60.632 ], "heli_params": [ -0.853, 3.120, 2.340, -3.171, -2.488, 60.756 ], "bp2_params": [ 2.958, -0.800, 0.644, 2.428, 8.504, -98.612 ], "groove_widths": [ 18.874, null, 24.316, null ], "simple_Rise": 2.412, "simple_Twist": 44.493, "simple_hRise": 2.306, "simple_hTwist": 44.669 }, { "index": 9, "nt1": "///A/350", "nt2": "///A/354", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 2.958, -0.800, 0.644, 2.428, 8.504, -98.612 ], "step_params": [ 2.524, -1.047, 3.079, -5.488, -2.162, -7.552 ], "heli_params": [ 11.334, 2.255, 3.636, 13.940, -35.391, -9.580 ], "bp2_params": [ 7.001, -2.066, -0.207, 14.856, 30.050, 34.254 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.079, "simple_Twist": -37.987, "simple_hRise": 3.336, "simple_hTwist": -38.426 }, { "index": 10, "nt1": "///A/351", "nt2": "///A/374", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm-W", "bp1_params": [ 7.001, -2.066, -0.207, 14.856, 30.050, 34.254 ], "step_params": [ 2.275, -3.009, 8.628, 13.148, 0.540, -139.200 ], "heli_params": [ 1.596, 1.407, 8.528, -0.288, 7.009, -139.480 ], "bp2_params": [ -2.768, -8.157, -0.383, -36.571, -49.637, -166.254 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 8.628, "simple_Twist": 18.801, "simple_hRise": 8.318, "simple_hTwist": 22.914 }, { "index": 11, "nt1": "///A/352", "nt2": "///A/373", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tSS", "DSSR": "tm+m" } ] }, { "index": 16, "num_stems": 3, "strand1": "UGAGUGUCCUCGGGAGA", "strand2": "UCUCACAGGAGCCCUCU", "bp_type": ".||||||||||||||||", "helix_form": ".AAAAxA..xx..AAx", "helical_rise": 2.908, "helical_rise_std": 0.815, "helical_radius": 9.654, "helical_radius_std": 3.139, "helical_axis": [ 0.481, -0.731, -0.484 ], "point1": [ 156.244, 277.464, 164.988 ], "point2": [ 178.625, 243.488, 142.498 ], "num_pairs": 17, "pairs": [ { "index": 1, "nt1": "///A/405", "nt2": "///A/311", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.571, -1.397, 0.599, -12.940, -19.548, 23.995 ], "step_params": [ -0.112, -1.416, 2.796, 5.537, 7.649, 36.944 ], "heli_params": [ -2.956, 0.742, 2.424, 11.835, -8.567, 38.091 ], "bp2_params": [ -0.172, -0.188, -0.232, -6.906, 0.436, 0.704 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.796, "simple_Twist": 20.925, "simple_hRise": 2.060, "simple_hTwist": 22.936 }, { "index": 2, "nt1": "///A/406", "nt2": "///A/310", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.172, -0.188, -0.232, -6.906, 0.436, 0.704 ], "step_params": [ -0.187, -1.688, 2.841, 0.520, 12.697, 31.448 ], "heli_params": [ -4.480, 0.386, 2.024, 22.318, -0.914, 33.858 ], "bp2_params": [ -0.025, -0.270, -0.495, 0.040, -1.173, 1.219 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.841, "simple_Twist": 30.403, "simple_hRise": 1.992, "simple_hTwist": 32.894 }, { "index": 3, "nt1": "///A/407", "nt2": "///A/309", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.025, -0.270, -0.495, 0.040, -1.173, 1.219 ], "step_params": [ 0.041, -2.238, 3.463, 0.284, 4.786, 27.383 ], "heli_params": [ -5.810, -0.017, 3.035, 10.013, -0.594, 27.791 ], "bp2_params": [ -0.189, -0.228, -0.785, -3.489, 1.972, 0.001 ], "groove_widths": [ 16.763, null, 19.209, null ], "simple_Rise": 3.463, "simple_Twist": 27.975, "simple_hRise": 3.045, "simple_hTwist": 28.375 }, { "index": 4, "nt1": "///A/408", "nt2": "///A/308", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.189, -0.228, -0.785, -3.489, 1.972, 0.001 ], "step_params": [ -0.169, -1.845, 3.001, 1.900, 1.507, 34.093 ], "heli_params": [ -3.355, 0.559, 2.906, 2.566, -3.236, 34.177 ], "bp2_params": [ -0.023, -0.337, -0.964, 2.148, -1.679, 2.251 ], "groove_widths": [ 19.215, 14.986, 16.646, 13.467 ], "simple_Rise": 3.001, "simple_Twist": 33.390, "simple_hRise": 2.904, "simple_hTwist": 33.476 }, { "index": 5, "nt1": "///A/409", "nt2": "///A/307", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.023, -0.337, -0.964, 2.148, -1.679, 2.251 ], "step_params": [ 0.717, -1.875, 3.531, 1.633, 4.736, 23.492 ], "heli_params": [ -6.082, -1.180, 3.139, 11.464, -3.954, 24.013 ], "bp2_params": [ -0.223, -0.261, 0.455, -4.153, -13.530, -4.186 ], "groove_widths": [ 20.772, 15.505, 13.422, 10.802 ], "simple_Rise": 3.531, "simple_Twist": 24.081, "simple_hRise": 3.150, "simple_hTwist": 24.589 }, { "index": 6, "nt1": "///A/410", "nt2": "///A/306", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.223, -0.261, 0.455, -4.153, -13.530, -4.186 ], "step_params": [ -4.097, -1.502, 3.415, 29.105, 17.139, 78.312 ], "heli_params": [ -1.460, 3.633, 1.774, 13.030, -22.127, 84.198 ], "bp2_params": [ -0.132, -0.061, -0.399, 21.386, -6.049, 0.126 ], "groove_widths": [ 18.024, 14.889, 11.042, 9.900 ], "simple_Rise": 3.415, "simple_Twist": 78.454, "simple_hRise": 1.778, "simple_hTwist": 84.326 }, { "index": 7, "nt1": "///A/413", "nt2": "///A/305", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.132, -0.061, -0.399, 21.386, -6.049, 0.126 ], "step_params": [ -0.026, -1.564, 3.709, 6.257, 3.558, 37.575 ], "heli_params": [ -2.886, 0.915, 3.503, 5.463, -9.606, 38.234 ], "bp2_params": [ 0.191, -0.281, -0.832, 2.075, -4.364, -0.437 ], "groove_widths": [ 16.124, 13.364, 11.698, 10.907 ], "simple_Rise": 3.709, "simple_Twist": 35.810, "simple_hRise": 3.489, "simple_hTwist": 36.503 }, { "index": 8, "nt1": "///A/414", "nt2": "///A/304", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.191, -0.281, -0.832, 2.075, -4.364, -0.437 ], "step_params": [ -1.132, -1.616, 3.221, 2.049, 8.856, 32.193 ], "heli_params": [ -4.144, 2.277, 2.621, 15.586, -3.606, 33.419 ], "bp2_params": [ 0.132, -0.223, -0.634, 3.577, 4.975, -2.597 ], "groove_widths": [ 16.716, 14.634, 19.902, 19.496 ], "simple_Rise": 3.221, "simple_Twist": 32.320, "simple_hRise": 2.624, "simple_hTwist": 33.541 }, { "index": 9, "nt1": "///A/415", "nt2": "///A/303", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.132, -0.223, -0.634, 3.577, 4.975, -2.597 ], "step_params": [ 0.219, -0.563, 3.623, 7.440, 3.842, 24.257 ], "heli_params": [ -2.469, 1.833, 3.409, 8.813, -17.067, 25.641 ], "bp2_params": [ -0.535, -0.638, -1.865, 10.006, 1.565, -3.208 ], "groove_widths": [ 19.811, 16.327, 23.295, 21.274 ], "simple_Rise": 3.623, "simple_Twist": 27.497, "simple_hRise": 3.453, "simple_hTwist": 28.720 }, { "index": 10, "nt1": "///A/416", "nt2": "///A/302", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.535, -0.638, -1.865, 10.006, 1.565, -3.208 ], "step_params": [ -0.331, -1.959, 4.272, -12.368, 5.132, -67.951 ], "heli_params": [ 1.479, -0.890, 4.286, -4.546, -10.957, -69.102 ], "bp2_params": [ 0.148, -0.254, -0.874, 9.459, 2.705, -0.545 ], "groove_widths": [ 20.283, 15.053, 22.201, 13.248 ], "simple_Rise": 4.272, "simple_Twist": -69.552, "simple_hRise": 4.287, "simple_hTwist": -70.670 }, { "index": 11, "nt1": "///A/451", "nt2": "///A/300", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.148, -0.254, -0.874, 9.459, 2.705, -0.545 ], "step_params": [ 1.346, 0.061, 2.805, -0.103, 2.430, -16.219 ], "heli_params": [ -1.661, 4.658, 2.774, -8.549, -0.363, -16.399 ], "bp2_params": [ -0.191, -0.225, 0.784, 2.342, 2.579, 0.624 ], "groove_widths": [ 17.296, 14.285, 23.786, 15.445 ], "simple_Rise": 2.805, "simple_Twist": -16.130, "simple_hRise": 2.773, "simple_hTwist": -16.312 }, { "index": 12, "nt1": "///A/453", "nt2": "///A/468", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.191, -0.225, 0.784, 2.342, 2.579, 0.624 ], "step_params": [ 0.084, -2.385, 3.648, 8.300, 16.985, 34.486 ], "heli_params": [ -5.514, 0.831, 2.239, 26.344, -12.873, 39.189 ], "bp2_params": [ -0.209, -0.251, -0.964, -8.833, -7.738, 3.263 ], "groove_widths": [ 18.393, 17.649, 23.204, 21.998 ], "simple_Rise": 3.648, "simple_Twist": 34.661, "simple_hRise": 2.247, "simple_hTwist": 39.342 }, { "index": 13, "nt1": "///A/454", "nt2": "///A/467", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.209, -0.251, -0.964, -8.833, -7.738, 3.263 ], "step_params": [ -0.919, -1.506, 3.838, -2.237, 1.780, 28.133 ], "heli_params": [ -3.565, 1.274, 3.797, 3.651, 4.586, 28.275 ], "bp2_params": [ -0.125, -0.189, -0.871, -12.180, 0.498, -0.497 ], "groove_widths": [ 18.838, 16.701, 16.092, 16.032 ], "simple_Rise": 3.838, "simple_Twist": 27.749, "simple_hRise": 3.796, "simple_hTwist": 27.893 }, { "index": 14, "nt1": "///A/455", "nt2": "///A/466", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.125, -0.189, -0.871, -12.180, 0.498, -0.497 ], "step_params": [ 0.067, -0.984, 3.153, -2.760, 4.056, 31.509 ], "heli_params": [ -2.489, -0.597, 2.989, 7.413, 5.045, 31.879 ], "bp2_params": [ 0.106, -0.317, -1.003, -2.794, 3.242, 0.511 ], "groove_widths": [ 17.394, null, 16.709, null ], "simple_Rise": 3.153, "simple_Twist": 30.162, "simple_hRise": 2.980, "simple_hTwist": 30.549 }, { "index": 15, "nt1": "///A/456", "nt2": "///A/465", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.106, -0.317, -1.003, -2.794, 3.242, 0.511 ], "step_params": [ -0.034, -1.122, 3.275, -4.441, -1.476, 35.486 ], "heli_params": [ -1.612, -0.589, 3.298, -2.409, 7.248, 35.784 ], "bp2_params": [ -0.231, -0.202, 0.076, 10.512, 8.828, -2.225 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.275, "simple_Twist": 37.171, "simple_hRise": 3.298, "simple_hTwist": 37.454 }, { "index": 16, "nt1": "///A/457", "nt2": "///A/464", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.231, -0.202, 0.076, 10.512, 8.828, -2.225 ], "step_params": [ -1.506, -1.059, 3.326, 8.103, 3.970, 47.913 ], "heli_params": [ -1.579, 2.427, 2.959, 4.838, -9.875, 48.706 ], "bp2_params": [ 0.056, -0.373, -1.173, 13.894, 1.852, -9.010 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.326, "simple_Twist": 46.316, "simple_hRise": 2.943, "simple_hTwist": 47.140 }, { "index": 17, "nt1": "///A/2436", "nt2": "///A/463", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 17, "num_stems": 1, "strand1": "AUACGGCGGAAC", "strand2": "AAGGCUGCCUUA", "bp_type": "...||||||||.", "helix_form": "x......A..x", "helical_rise": 2.621, "helical_rise_std": 1.081, "helical_radius": 9.225, "helical_radius_std": 2.247, "helical_axis": [ -0.254, -0.936, -0.245 ], "point1": [ 189.653, 250.566, 163.371 ], "point2": [ 182.455, 224.063, 156.424 ], "num_pairs": 12, "pairs": [ { "index": 1, "nt1": "///A/418", "nt2": "///A/449", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "tHH", "DSSR": "tM+M", "bp1_params": [ 5.663, -4.252, 2.129, 30.379, 47.698, 161.524 ], "step_params": [ 0.039, 2.067, 2.697, 10.509, 13.821, -95.517 ], "heli_params": [ -1.570, 0.168, 2.445, -9.276, 7.053, -96.703 ], "bp2_params": [ 3.669, -1.287, -0.932, -8.425, -0.142, -105.193 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.697, "simple_Twist": 38.366, "simple_hRise": 3.138, "simple_hTwist": 41.977 }, { "index": 2, "nt1": "///A/420", "nt2": "///A/448", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 3.669, -1.287, -0.932, -8.425, -0.142, -105.193 ], "step_params": [ 5.545, -0.462, 3.396, -17.236, -4.982, -10.932 ], "heli_params": [ 5.365, 1.049, 6.207, 16.355, -56.578, -20.986 ], "bp2_params": [ -6.736, -4.187, 0.336, 0.409, 2.247, -7.197 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.396, "simple_Twist": 55.344, "simple_hRise": 1.773, "simple_hTwist": 57.960 }, { "index": 3, "nt1": "///A/421", "nt2": "///A/447", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.736, -4.187, 0.336, 0.409, 2.247, -7.197 ], "step_params": [ 0.252, -1.025, 3.107, 0.471, 1.586, 65.919 ], "heli_params": [ -1.002, -0.213, 3.086, 1.457, -0.433, 65.938 ], "bp2_params": [ 0.143, -0.145, 0.213, 4.218, -1.962, 1.170 ], "groove_widths": [ 16.924, null, 13.298, null ], "simple_Rise": 3.107, "simple_Twist": 20.705, "simple_hRise": 3.026, "simple_hTwist": 20.770 }, { "index": 4, "nt1": "///A/422", "nt2": "///A/446", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.143, -0.145, 0.213, 4.218, -1.962, 1.170 ], "step_params": [ -0.458, -2.605, 3.133, -2.438, 1.896, 31.415 ], "heli_params": [ -5.120, 0.416, 3.001, 3.492, 4.488, 31.563 ], "bp2_params": [ -0.121, -0.210, -0.030, -2.945, -3.508, -1.277 ], "groove_widths": [ 16.602, 15.042, 14.336, 11.722 ], "simple_Rise": 3.133, "simple_Twist": 33.688, "simple_hRise": 3.011, "simple_hTwist": 33.825 }, { "index": 5, "nt1": "///A/423", "nt2": "///A/445", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.121, -0.210, -0.030, -2.945, -3.508, -1.277 ], "step_params": [ -0.112, -1.550, 3.314, -8.061, 16.357, 19.851 ], "heli_params": [ -6.953, -1.544, 1.557, 38.531, 18.988, 26.893 ], "bp2_params": [ -2.627, -0.643, -0.007, -6.374, 12.008, -10.563 ], "groove_widths": [ 17.095, 15.047, 15.375, 10.234 ], "simple_Rise": 3.314, "simple_Twist": 32.202, "simple_hRise": 2.260, "simple_hTwist": 36.888 }, { "index": 6, "nt1": "///A/424", "nt2": "///A/444", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.627, -0.643, -0.007, -6.374, 12.008, -10.563 ], "step_params": [ 0.380, -1.820, 3.054, -0.491, 7.190, 47.126 ], "heli_params": [ -2.768, -0.506, 2.760, 8.931, 0.610, 47.643 ], "bp2_params": [ 0.227, -0.244, -0.084, 3.150, 14.661, 0.955 ], "groove_widths": [ 17.411, 15.551, 14.806, 9.016 ], "simple_Rise": 3.054, "simple_Twist": 32.047, "simple_hRise": 2.590, "simple_hTwist": 32.827 }, { "index": 7, "nt1": "///A/425", "nt2": "///A/443", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.227, -0.244, -0.084, 3.150, 14.661, 0.955 ], "step_params": [ 0.804, -1.771, 3.139, 0.401, 4.702, 27.545 ], "heli_params": [ -4.692, -1.578, 2.815, 9.784, -0.835, 27.939 ], "bp2_params": [ -0.147, -0.157, 0.204, 2.826, 9.415, 3.074 ], "groove_widths": [ 17.184, 15.657, 16.952, 12.095 ], "simple_Rise": 3.139, "simple_Twist": 30.506, "simple_hRise": 2.851, "simple_hTwist": 30.860 }, { "index": 8, "nt1": "///A/426", "nt2": "///A/442", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.147, -0.157, 0.204, 2.826, 9.415, 3.074 ], "step_params": [ 0.431, -1.700, 3.181, 1.860, 3.598, 32.146 ], "heli_params": [ -3.649, -0.461, 2.998, 6.465, -3.343, 32.393 ], "bp2_params": [ -0.165, -0.239, 0.110, 2.946, 1.747, -2.580 ], "groove_widths": [ 16.671, 14.857, 19.336, 12.007 ], "simple_Rise": 3.181, "simple_Twist": 31.704, "simple_hRise": 2.995, "simple_hTwist": 31.955 }, { "index": 9, "nt1": "///A/427", "nt2": "///A/441", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.165, -0.239, 0.110, 2.946, 1.747, -2.580 ], "step_params": [ 0.956, -3.093, 2.998, 1.903, 6.732, 26.527 ], "heli_params": [ -7.876, -1.636, 2.222, 14.356, -4.058, 27.418 ], "bp2_params": [ -0.051, -0.206, 0.246, -1.987, -3.250, 3.438 ], "groove_widths": [ 16.681, null, 20.892, null ], "simple_Rise": 2.998, "simple_Twist": 25.523, "simple_hRise": 2.188, "simple_hTwist": 26.449 }, { "index": 10, "nt1": "///A/428", "nt2": "///A/440", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.051, -0.206, 0.246, -1.987, -3.250, 3.438 ], "step_params": [ -0.005, -1.544, 3.632, 21.554, 11.690, 39.834 ], "heli_params": [ -3.002, 1.938, 2.759, 15.511, -28.599, 46.513 ], "bp2_params": [ 0.020, -0.117, -0.947, -7.796, -31.517, 1.923 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.632, "simple_Twist": 39.249, "simple_hRise": 2.742, "simple_hTwist": 46.021 }, { "index": 11, "nt1": "///A/429", "nt2": "///A/439", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.020, -0.117, -0.947, -7.796, -31.517, 1.923 ], "step_params": [ 3.466, -1.513, 4.903, 4.521, -34.191, 37.597 ], "heli_params": [ 2.523, -3.488, 4.981, -43.549, -5.758, 50.594 ], "bp2_params": [ -4.301, 1.149, -0.699, -12.007, 9.867, -15.485 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.903, "simple_Twist": 57.645, "simple_hRise": 5.244, "simple_hTwist": 66.406 }, { "index": 12, "nt1": "///A/430", "nt2": "///A/437", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 18, "num_stems": 1, "strand1": "AUACCG", "strand2": "AAGGGA", "bp_type": "...||.", "helix_form": "x..A.", "helical_rise": 3.466, "helical_rise_std": 0.383, "helical_radius": 7.931, "helical_radius_std": 2.480, "helical_axis": [ 0.915, -0.047, 0.401 ], "point1": [ 154.766, 199.113, 201.496 ], "point2": [ 170.668, 198.294, 208.456 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/504", "nt2": "///A/518", "bp": "A+A", "name": "--", "Saenger": "02-II", "LW": "tHH", "DSSR": "tM+M", "bp1_params": [ -5.529, 5.098, 0.889, -7.204, 11.718, -173.179 ], "step_params": [ -0.532, -0.602, 3.842, -2.227, 3.573, 88.416 ], "heli_params": [ -0.519, 0.326, 3.831, 2.561, 1.596, 88.495 ], "bp2_params": [ 4.050, -1.739, 0.185, 6.314, -2.769, -102.359 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.842, "simple_Twist": 37.033, "simple_hRise": 3.794, "simple_hTwist": 37.264 }, { "index": 2, "nt1": "///A/506", "nt2": "///A/517", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 4.050, -1.739, 0.185, 6.314, -2.769, -102.359 ], "step_params": [ 5.006, -1.386, 3.505, -0.107, 4.840, -8.799 ], "heli_params": [ -2.769, 28.365, 3.793, -28.853, -0.638, -10.041 ], "bp2_params": [ -6.770, -3.850, 0.041, -2.399, -1.883, -9.750 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.505, "simple_Twist": 58.695, "simple_hRise": 3.383, "simple_hTwist": 58.877 }, { "index": 3, "nt1": "///A/507", "nt2": "///A/516", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.770, -3.850, 0.041, -2.399, -1.883, -9.750 ], "step_params": [ 0.422, -1.056, 3.612, -0.739, 1.698, 58.908 ], "heli_params": [ -1.169, -0.471, 3.578, 1.726, 0.752, 58.935 ], "bp2_params": [ 0.185, -0.155, -0.282, -0.515, -2.055, 0.482 ], "groove_widths": [ 17.362, null, 12.631, null ], "simple_Rise": 3.612, "simple_Twist": 14.886, "simple_hRise": 3.445, "simple_hTwist": 15.001 }, { "index": 4, "nt1": "///A/508", "nt2": "///A/515", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.185, -0.155, -0.282, -0.515, -2.055, 0.482 ], "step_params": [ 0.172, -2.143, 3.205, -2.710, 3.088, 29.330 ], "heli_params": [ -4.810, -0.877, 2.941, 6.062, 5.320, 29.610 ], "bp2_params": [ 0.176, -0.168, 0.324, 2.697, 2.435, 0.996 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.205, "simple_Twist": 29.287, "simple_hRise": 2.941, "simple_hTwist": 29.568 }, { "index": 5, "nt1": "///A/509", "nt2": "///A/514", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.176, -0.168, 0.324, 2.697, 2.435, 0.996 ], "step_params": [ -3.987, -1.656, 3.393, 8.636, 20.087, 54.260 ], "heli_params": [ -2.634, 4.500, 2.107, 21.089, -9.067, 58.188 ], "bp2_params": [ 7.702, -5.196, 0.580, 7.154, -17.161, -41.966 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.393, "simple_Twist": 5.990, "simple_hRise": -2.082, "simple_hTwist": 22.661 }, { "index": 6, "nt1": "///A/510", "nt2": "///A/513", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 19, "num_stems": 0, "strand1": "AAG", "strand2": "GUC", "bp_type": "..|", "helix_form": ".x", "helical_rise": 4.209, "helical_rise_std": 0.298, "helical_radius": 7.294, "helical_radius_std": 1.626, "helical_axis": [ 0.902, -0.418, -0.111 ], "point1": [ 124.200, 188.994, 216.284 ], "point2": [ 131.871, 185.440, 215.341 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/527", "nt2": "///A/523", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.638, -3.270, -1.063, -10.775, 14.098, -13.271 ], "step_params": [ -1.319, -0.878, 3.740, -3.938, -2.812, -1.714 ], "heli_params": [ 25.834, -37.179, -0.244, 40.969, -57.375, -5.133 ], "bp2_params": [ -3.775, -1.665, -0.641, -5.959, 3.239, -96.191 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.740, "simple_Twist": -18.933, "simple_hRise": 3.237, "simple_hTwist": -19.536 }, { "index": 2, "nt1": "///A/526", "nt2": "///A/522", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -3.775, -1.665, -0.641, -5.959, 3.239, -96.191 ], "step_params": [ 3.040, -2.067, 3.332, 9.766, -22.022, 29.477 ], "heli_params": [ 0.683, -2.966, 4.550, -36.555, -16.210, 37.899 ], "bp2_params": [ -0.082, -0.336, -0.856, 9.191, 15.723, -11.225 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.332, "simple_Twist": 6.804, "simple_hRise": 3.915, "simple_hTwist": 25.019 }, { "index": 3, "nt1": "///A/528", "nt2": "///A/555", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 20, "num_stems": 1, "strand1": "GGGGAGUG", "strand2": "CCCCCGAA", "bp_type": "||||....", "helix_form": "AAAxxxx", "helical_rise": 3.162, "helical_rise_std": 0.630, "helical_radius": 9.089, "helical_radius_std": 1.713, "helical_axis": [ -0.711, 0.229, -0.665 ], "point1": [ 135.110, 174.449, 231.533 ], "point2": [ 119.283, 179.549, 216.725 ], "num_pairs": 8, "pairs": [ { "index": 1, "nt1": "///A/539", "nt2": "///A/534", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.260, -0.156, 0.438, -4.453, 16.439, 4.002 ], "step_params": [ 0.682, -2.350, 3.043, -0.430, 6.744, 24.757 ], "heli_params": [ -6.884, -1.638, 2.320, 15.367, 0.980, 25.649 ], "bp2_params": [ -0.254, -0.187, 0.427, 0.151, 10.402, 2.114 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.043, "simple_Twist": 24.470, "simple_hRise": 2.310, "simple_hTwist": 25.372 }, { "index": 2, "nt1": "///A/540", "nt2": "///A/533", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.254, -0.187, 0.427, 0.151, 10.402, 2.114 ], "step_params": [ 0.162, -2.241, 3.193, -0.406, 7.287, 33.909 ], "heli_params": [ -4.775, -0.328, 2.666, 12.318, 0.687, 34.663 ], "bp2_params": [ -0.191, -0.229, 0.589, -0.704, 8.937, 2.433 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.193, "simple_Twist": 33.998, "simple_hRise": 2.668, "simple_hTwist": 34.750 }, { "index": 3, "nt1": "///A/541", "nt2": "///A/532", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.191, -0.229, 0.589, -0.704, 8.937, 2.433 ], "step_params": [ 0.825, -2.337, 3.309, 4.266, 4.208, 30.325 ], "heli_params": [ -5.188, -0.737, 3.050, 7.946, -8.056, 30.898 ], "bp2_params": [ -0.169, -0.198, 0.416, -7.483, 0.556, 0.336 ], "groove_widths": [ 17.289, null, 15.256, null ], "simple_Rise": 3.309, "simple_Twist": 30.099, "simple_hRise": 3.047, "simple_hTwist": 30.676 }, { "index": 4, "nt1": "///A/542", "nt2": "///A/531", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.169, -0.198, 0.416, -7.483, 0.556, 0.336 ], "step_params": [ 5.825, 0.077, 2.817, -13.916, 9.055, 31.762 ], "heli_params": [ -0.542, -10.517, 0.321, 15.307, 23.525, 35.740 ], "bp2_params": [ -6.765, -1.066, 0.920, 3.607, -11.645, 46.215 ], "groove_widths": [ 17.452, 14.519, 12.015, 11.771 ], "simple_Rise": 2.817, "simple_Twist": 75.069, "simple_hRise": 1.874, "simple_hTwist": 76.618 }, { "index": 5, "nt1": "///A/543", "nt2": "///A/529", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "bp1_params": [ -6.765, -1.066, 0.920, 3.607, -11.645, 46.215 ], "step_params": [ -2.309, -1.254, 3.858, 5.371, -0.365, 97.599 ], "heli_params": [ -0.825, 1.637, 3.764, -0.242, -3.567, 97.709 ], "bp2_params": [ 3.914, 1.505, -0.165, -20.281, 9.611, -60.184 ], "groove_widths": [ 18.362, null, 12.629, null ], "simple_Rise": 3.858, "simple_Twist": 36.849, "simple_hRise": 3.511, "simple_hTwist": 37.226 }, { "index": 6, "nt1": "///A/544", "nt2": "///A/552", "bp": "G-G", "name": "--", "Saenger": "--", "LW": ".WH", "DSSR": ".W-M", "bp1_params": [ 3.914, 1.505, -0.165, -20.281, 9.611, -60.184 ], "step_params": [ -1.625, -1.554, 3.076, -2.775, 7.160, 52.601 ], "heli_params": [ -2.160, 1.653, 2.932, 8.031, 3.113, 53.119 ], "bp2_params": [ 4.221, -1.871, 0.490, 0.277, 1.179, -95.719 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.076, "simple_Twist": 43.788, "simple_hRise": 2.892, "simple_hTwist": 44.424 }, { "index": 7, "nt1": "///A/545", "nt2": "///A/549", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 4.221, -1.871, 0.490, 0.277, 1.179, -95.719 ], "step_params": [ 1.380, -0.881, 3.126, 2.723, -1.518, -6.308 ], "heli_params": [ 11.997, 19.893, 2.079, 12.812, 22.987, -7.036 ], "bp2_params": [ 6.777, -3.430, 0.484, 10.644, 9.691, -2.193 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.126, "simple_Twist": -24.040, "simple_hRise": 2.893, "simple_hTwist": -24.238 }, { "index": 8, "nt1": "///A/546", "nt2": "///A/551", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 21, "num_stems": 1, "strand1": "AACCUG", "strand2": "UUGGAC", "bp_type": ".|||||", "helix_form": "xAAAA", "helical_rise": 2.963, "helical_rise_std": 0.263, "helical_radius": 8.539, "helical_radius_std": 1.166, "helical_axis": [ 0.621, 0.608, -0.495 ], "point1": [ 161.673, 132.609, 184.723 ], "point2": [ 170.877, 141.617, 177.384 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/575", "nt2": "///A/2070", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.320, -2.345, 0.039, 0.560, 0.867, -91.976 ], "step_params": [ 2.204, -2.205, 3.339, -5.080, 1.343, 85.463 ], "heli_params": [ -1.653, -1.737, 3.201, 0.989, 3.740, 85.593 ], "bp2_params": [ 0.038, -0.083, 0.005, -1.893, 0.552, -0.428 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.339, "simple_Twist": 58.458, "simple_hRise": 3.108, "simple_hTwist": 58.673 }, { "index": 2, "nt1": "///A/2052", "nt2": "///A/2069", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.038, -0.083, 0.005, -1.893, 0.552, -0.428 ], "step_params": [ 0.082, -1.661, 3.145, -1.640, 0.619, 35.591 ], "heli_params": [ -2.801, -0.361, 3.110, 1.012, 2.681, 35.633 ], "bp2_params": [ 0.178, -0.128, 0.207, 1.720, 1.139, 1.926 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.145, "simple_Twist": 34.689, "simple_hRise": 3.109, "simple_hTwist": 34.732 }, { "index": 3, "nt1": "///A/2053", "nt2": "///A/2068", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.178, -0.128, 0.207, 1.720, 1.139, 1.926 ], "step_params": [ -0.437, -1.709, 3.331, -2.560, 3.611, 31.901 ], "heli_params": [ -3.723, 0.333, 3.148, 6.530, 4.630, 32.198 ], "bp2_params": [ 0.188, -0.280, 0.762, -0.383, 2.402, -0.224 ], "groove_widths": [ 17.193, null, 15.064, null ], "simple_Rise": 3.331, "simple_Twist": 32.015, "simple_hRise": 3.149, "simple_hTwist": 32.311 }, { "index": 4, "nt1": "///A/2054", "nt2": "///A/2067", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.188, -0.280, 0.762, -0.383, 2.402, -0.224 ], "step_params": [ 0.056, -1.407, 3.175, 2.320, 4.073, 31.320 ], "heli_params": [ -3.288, 0.301, 2.969, 7.491, -4.268, 31.660 ], "bp2_params": [ 0.019, -0.208, 0.838, 1.513, 1.955, -2.152 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.175, "simple_Twist": 32.636, "simple_hRise": 2.979, "simple_hTwist": 32.962 }, { "index": 5, "nt1": "///A/2055", "nt2": "///A/2066", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.019, -0.208, 0.838, 1.513, 1.955, -2.152 ], "step_params": [ 0.925, -1.947, 3.402, 10.399, 18.422, 35.427 ], "heli_params": [ -4.673, -0.247, 2.332, 27.465, -15.504, 41.088 ], "bp2_params": [ -0.203, -0.113, -0.586, -10.615, -7.086, -0.254 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.402, "simple_Twist": 35.952, "simple_hRise": 2.350, "simple_hTwist": 41.536 }, { "index": 6, "nt1": "///A/2056", "nt2": "///A/2065", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 22, "num_stems": 2, "strand1": "GUCAGAGCCC", "strand2": "CGGUAGUGGG", "bp_type": "||||..||||", "helix_form": "AAA....AA", "helical_rise": 2.938, "helical_rise_std": 0.327, "helical_radius": 9.032, "helical_radius_std": 1.508, "helical_axis": [ -0.977, -0.052, 0.205 ], "point1": [ 150.045, 139.959, 181.142 ], "point2": [ 124.182, 138.578, 186.575 ], "num_pairs": 10, "pairs": [ { "index": 1, "nt1": "///A/579", "nt2": "///A/604", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.191, -0.134, -0.195, -8.936, -0.090, -1.208 ], "step_params": [ -0.082, -1.013, 3.147, -3.264, 5.052, 40.839 ], "heli_params": [ -1.952, -0.216, 3.003, 7.193, 4.647, 41.261 ], "bp2_params": [ 1.499, -0.394, 0.046, 0.378, 5.784, -0.891 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.147, "simple_Twist": 31.959, "simple_hRise": 2.950, "simple_hTwist": 32.505 }, { "index": 2, "nt1": "///A/580", "nt2": "///A/603", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.499, -0.394, 0.046, 0.378, 5.784, -0.891 ], "step_params": [ 0.207, -1.692, 3.058, 1.351, 5.359, 30.240 ], "heli_params": [ -4.130, -0.154, 2.731, 10.166, -2.563, 30.729 ], "bp2_params": [ 0.221, -0.201, 0.255, 6.397, 5.215, 1.151 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.058, "simple_Twist": 37.136, "simple_hRise": 2.801, "simple_hTwist": 37.530 }, { "index": 3, "nt1": "///A/581", "nt2": "///A/602", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.221, -0.201, 0.255, 6.397, 5.215, 1.151 ], "step_params": [ 0.549, -1.821, 3.458, 6.355, 21.896, 34.195 ], "heli_params": [ -4.827, -0.141, 2.047, 33.078, -9.601, 40.909 ], "bp2_params": [ 0.042, -0.124, -0.651, -7.698, 0.106, 1.457 ], "groove_widths": [ 18.203, null, 13.451, null ], "simple_Rise": 3.458, "simple_Twist": 35.254, "simple_hRise": 2.094, "simple_hTwist": 41.786 }, { "index": 4, "nt1": "///A/582", "nt2": "///A/601", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.042, -0.124, -0.651, -7.698, 0.106, 1.457 ], "step_params": [ -0.824, -0.784, 3.977, 1.479, 3.096, 59.032 ], "heli_params": [ -0.985, 0.926, 3.915, 3.139, -1.500, 59.122 ], "bp2_params": [ 7.001, -4.053, -1.057, -2.771, 8.684, -8.360 ], "groove_widths": [ 18.493, 16.091, 14.950, 13.270 ], "simple_Rise": 3.977, "simple_Twist": 14.383, "simple_hRise": 3.624, "simple_hTwist": 14.784 }, { "index": 5, "nt1": "///A/583", "nt2": "///A/600", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 7.001, -4.053, -1.057, -2.771, 8.684, -8.360 ], "step_params": [ 0.957, -1.492, 3.199, 4.661, 14.789, -19.652 ], "heli_params": [ -1.413, 3.744, 3.222, -36.799, 11.597, -24.986 ], "bp2_params": [ -6.858, -3.971, -0.375, -5.905, -1.149, -12.007 ], "groove_widths": [ 18.417, 16.217, 16.046, 14.890 ], "simple_Rise": 3.199, "simple_Twist": 69.015, "simple_hRise": 2.921, "simple_hTwist": 70.524 }, { "index": 6, "nt1": "///A/584", "nt2": "///A/599", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.858, -3.971, -0.375, -5.905, -1.149, -12.007 ], "step_params": [ -0.301, -0.961, 3.896, -3.897, 2.001, 47.884 ], "heli_params": [ -1.366, 0.005, 3.867, 2.459, 4.790, 48.072 ], "bp2_params": [ -2.351, -0.492, -0.706, -7.367, 5.458, -4.895 ], "groove_widths": [ 17.904, 16.049, 15.996, 15.358 ], "simple_Rise": 3.896, "simple_Twist": 16.976, "simple_hRise": 3.732, "simple_hTwist": 17.528 }, { "index": 7, "nt1": "///A/585", "nt2": "///A/598", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.351, -0.492, -0.706, -7.367, 5.458, -4.895 ], "step_params": [ 0.490, -1.336, 3.263, -3.301, 2.686, 39.374 ], "heli_params": [ -2.280, -1.101, 3.120, 3.973, 4.882, 39.595 ], "bp2_params": [ 0.201, -0.156, -0.136, 1.879, 8.989, 1.395 ], "groove_widths": [ 17.577, null, 14.636, null ], "simple_Rise": 3.263, "simple_Twist": 25.327, "simple_hRise": 3.020, "simple_hTwist": 25.676 }, { "index": 8, "nt1": "///A/586", "nt2": "///A/597", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.201, -0.156, -0.136, 1.879, 8.989, 1.395 ], "step_params": [ 0.352, -1.796, 3.133, 3.790, 8.993, 32.687 ], "heli_params": [ -4.343, -0.062, 2.586, 15.552, -6.554, 34.075 ], "bp2_params": [ 0.206, -0.143, -0.357, 1.433, -0.321, 1.220 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.133, "simple_Twist": 32.673, "simple_hRise": 2.586, "simple_hTwist": 34.061 }, { "index": 9, "nt1": "///A/587", "nt2": "///A/596", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.206, -0.143, -0.357, 1.433, -0.321, 1.220 ], "step_params": [ 0.108, -2.075, 2.903, 3.963, 11.522, 32.067 ], "heli_params": [ -4.948, 0.306, 2.055, 19.979, -6.871, 34.247 ], "bp2_params": [ 0.165, -0.149, -0.492, 3.259, -3.355, 0.330 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.903, "simple_Twist": 32.244, "simple_hRise": 2.061, "simple_hTwist": 34.412 }, { "index": 10, "nt1": "///A/588", "nt2": "///A/595", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 23, "num_stems": 1, "strand1": "GCCCGG", "strand2": "UGGUCG", "bp_type": ".||.|.", "helix_form": "x...x", "helical_rise": 2.629, "helical_rise_std": 0.351, "helical_radius": 11.902, "helical_radius_std": 4.246, "helical_axis": [ 0.499, 0.746, 0.441 ], "point1": [ 165.980, 178.275, 163.274 ], "point2": [ 172.433, 187.906, 168.975 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/631", "nt2": "///A/857", "bp": "G+U", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ -4.458, -0.536, -0.118, -0.453, -4.770, 49.586 ], "step_params": [ -2.918, -0.316, 2.752, 9.662, 4.129, -108.335 ], "heli_params": [ 0.149, -1.690, 2.931, -2.543, 5.950, -108.682 ], "bp2_params": [ 0.086, -0.155, -0.503, 11.435, 9.848, -1.449 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.752, "simple_Twist": -3.166, "simple_hRise": 3.483, "simple_hTwist": -10.973 }, { "index": 2, "nt1": "///A/718", "nt2": "///A/856", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.086, -0.155, -0.503, 11.435, 9.848, -1.449 ], "step_params": [ -0.624, -1.889, 3.379, -6.042, 5.918, 35.240 ], "heli_params": [ -3.875, 0.151, 3.093, 9.605, 9.807, 36.209 ], "bp2_params": [ 0.085, -0.173, 0.097, 5.768, 7.233, -1.435 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.379, "simple_Twist": 35.066, "simple_hRise": 3.091, "simple_hTwist": 36.040 }, { "index": 3, "nt1": "///A/719", "nt2": "///A/855", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.085, -0.173, 0.097, 5.768, 7.233, -1.435 ], "step_params": [ -1.540, -1.325, 2.895, 8.345, 5.342, 41.504 ], "heli_params": [ -2.263, 2.806, 2.376, 7.411, -11.578, 42.619 ], "bp2_params": [ 1.869, -0.266, -0.716, 17.930, 4.689, -27.755 ], "groove_widths": [ 22.172, null, 19.108, null ], "simple_Rise": 2.895, "simple_Twist": 33.277, "simple_hRise": 2.223, "simple_hTwist": 34.681 }, { "index": 4, "nt1": "///A/720", "nt2": "///A/854", "bp": "C-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.869, -0.266, -0.716, 17.930, 4.689, -27.755 ], "step_params": [ 2.264, -1.701, 4.296, 7.458, 12.047, 6.912 ], "heli_params": [ -17.728, -1.125, 1.661, 54.523, -33.751, 15.757 ], "bp2_params": [ -0.751, 0.138, -0.834, 10.392, -14.485, 13.999 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.296, "simple_Twist": 20.872, "simple_hRise": 3.428, "simple_hTwist": 25.183 }, { "index": 5, "nt1": "///A/721", "nt2": "///A/853", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.751, 0.138, -0.834, 10.392, -14.485, 13.999 ], "step_params": [ -5.870, 3.375, 4.018, -11.732, 33.817, 113.722 ], "heli_params": [ 1.484, 3.266, 4.945, 19.925, 6.912, 117.306 ], "bp2_params": [ -0.728, 7.791, 0.031, 23.364, 25.328, 121.998 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.018, "simple_Twist": 113.240, "simple_hRise": 4.952, "simple_hTwist": 116.857 }, { "index": 6, "nt1": "///A/2096", "nt2": "///A/852", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m" } ] }, { "index": 24, "num_stems": 2, "strand1": "UUACGAUCUCGUGC", "strand2": "AAUGCUGGUGCAUG", "bp_type": ".|||||||.|||||", "helix_form": "xAAAA..AAAAAA", "helical_rise": 2.712, "helical_rise_std": 0.372, "helical_radius": 8.905, "helical_radius_std": 1.456, "helical_axis": [ -0.649, 0.222, -0.727 ], "point1": [ 157.190, 193.558, 165.880 ], "point2": [ 134.275, 201.387, 140.216 ], "num_pairs": 14, "pairs": [ { "index": 1, "nt1": "///A/632", "nt2": "///A/717", "bp": "U+A", "name": "--", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "bp1_params": [ -0.750, 3.156, 0.052, 15.448, -12.825, 95.927 ], "step_params": [ 0.944, 0.175, 2.899, 4.757, 5.917, 84.377 ], "heli_params": [ 0.007, -0.602, 2.944, 4.398, -3.535, 84.654 ], "bp2_params": [ -0.021, -0.134, -0.321, -5.872, -4.442, 0.114 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.899, "simple_Twist": -8.356, "simple_hRise": 1.659, "simple_hTwist": -11.286 }, { "index": 2, "nt1": "///A/633", "nt2": "///A/715", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.021, -0.134, -0.321, -5.872, -4.442, 0.114 ], "step_params": [ -0.869, -1.276, 3.448, -4.207, 7.073, 26.169 ], "heli_params": [ -4.485, 0.768, 3.102, 15.151, 9.012, 27.411 ], "bp2_params": [ 0.131, -0.050, -0.215, -4.205, 6.017, -4.523 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.448, "simple_Twist": 25.476, "simple_hRise": 3.089, "simple_hTwist": 26.751 }, { "index": 3, "nt1": "///A/634", "nt2": "///A/714", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.131, -0.050, -0.215, -4.205, 6.017, -4.523 ], "step_params": [ 0.890, -1.191, 3.220, -1.096, 7.123, 33.956 ], "heli_params": [ -3.029, -1.652, 2.889, 12.028, 1.851, 34.690 ], "bp2_params": [ 0.201, -0.148, 0.120, 1.608, 2.964, 0.312 ], "groove_widths": [ 19.499, null, 15.138, null ], "simple_Rise": 3.220, "simple_Twist": 33.668, "simple_hRise": 2.885, "simple_hTwist": 34.409 }, { "index": 4, "nt1": "///A/635", "nt2": "///A/713", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.201, -0.148, 0.120, 1.608, 2.964, 0.312 ], "step_params": [ 0.790, -2.239, 2.897, 1.106, 12.411, 28.700 ], "heli_params": [ -5.933, -1.310, 1.824, 23.677, -2.110, 31.236 ], "bp2_params": [ -0.178, -0.192, 0.508, 0.614, 7.326, -0.093 ], "groove_widths": [ 17.889, 15.054, 16.185, 12.419 ], "simple_Rise": 2.897, "simple_Twist": 30.673, "simple_hRise": 1.899, "simple_hTwist": 33.051 }, { "index": 5, "nt1": "///A/636", "nt2": "///A/712", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.178, -0.192, 0.508, 0.614, 7.326, -0.093 ], "step_params": [ 0.417, -2.236, 3.007, 3.337, 6.660, 37.152 ], "heli_params": [ -4.187, -0.272, 2.609, 10.325, -5.174, 37.866 ], "bp2_params": [ 0.045, -0.085, 0.241, 0.920, 9.297, 0.653 ], "groove_widths": [ 17.664, 15.424, 17.043, 11.786 ], "simple_Rise": 3.007, "simple_Twist": 36.022, "simple_hRise": 2.594, "simple_hTwist": 36.759 }, { "index": 6, "nt1": "///A/637", "nt2": "///A/711", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.045, -0.085, 0.241, 0.920, 9.297, 0.653 ], "step_params": [ 0.090, -1.737, 3.275, 2.646, 3.243, 39.153 ], "heli_params": [ -2.956, 0.175, 3.126, 4.822, -3.935, 39.368 ], "bp2_params": [ 2.206, -0.215, 0.227, 7.550, 10.906, 5.945 ], "groove_widths": [ 17.793, 15.885, 17.520, 13.787 ], "simple_Rise": 3.275, "simple_Twist": 26.853, "simple_hRise": 3.042, "simple_hTwist": 27.172 }, { "index": 7, "nt1": "///A/638", "nt2": "///A/710", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.206, -0.215, 0.227, 7.550, 10.906, 5.945 ], "step_params": [ 0.026, -2.150, 3.072, 10.397, 11.331, 24.701 ], "heli_params": [ -6.306, 1.799, 1.804, 23.770, -21.811, 29.033 ], "bp2_params": [ 0.219, -0.169, -0.350, 1.619, -2.745, 0.538 ], "groove_widths": [ 17.564, 15.884, 16.841, 14.129 ], "simple_Rise": 3.072, "simple_Twist": 35.960, "simple_hRise": 2.243, "simple_hTwist": 39.010 }, { "index": 8, "nt1": "///A/639", "nt2": "///A/709", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.219, -0.169, -0.350, 1.619, -2.745, 0.538 ], "step_params": [ -1.405, -1.710, 3.242, -3.114, 7.914, 33.150 ], "heli_params": [ -4.099, 1.921, 2.886, 13.594, 5.349, 34.194 ], "bp2_params": [ 0.466, -0.476, 0.277, -0.584, 8.331, -18.029 ], "groove_widths": [ 17.290, 15.760, 15.669, 13.462 ], "simple_Rise": 3.242, "simple_Twist": 31.719, "simple_hRise": 2.865, "simple_hTwist": 32.811 }, { "index": 9, "nt1": "///A/640", "nt2": "///A/708", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.466, -0.476, 0.277, -0.584, 8.331, -18.029 ], "step_params": [ 1.140, -1.867, 3.117, -0.090, 2.250, 32.091 ], "heli_params": [ -3.744, -2.073, 2.979, 4.064, 0.162, 32.168 ], "bp2_params": [ 0.230, -0.186, 0.207, 4.834, 5.983, 1.147 ], "groove_widths": [ 17.596, 16.047, 15.562, 13.540 ], "simple_Rise": 3.117, "simple_Twist": 33.439, "simple_hRise": 2.985, "simple_hTwist": 33.513 }, { "index": 10, "nt1": "///A/641", "nt2": "///A/707", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.230, -0.186, 0.207, 4.834, 5.983, 1.147 ], "step_params": [ 0.207, -1.917, 3.352, 8.093, 17.433, 33.784 ], "heli_params": [ -4.820, 0.584, 2.141, 27.420, -12.729, 38.730 ], "bp2_params": [ -0.136, -0.194, -0.490, -7.190, 0.927, -0.090 ], "groove_widths": [ 17.866, 16.112, 15.564, 11.671 ], "simple_Rise": 3.352, "simple_Twist": 35.966, "simple_hRise": 2.225, "simple_hTwist": 40.629 }, { "index": 11, "nt1": "///A/642", "nt2": "///A/706", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.136, -0.194, -0.490, -7.190, 0.927, -0.090 ], "step_params": [ -0.105, -1.294, 3.262, -1.563, 5.171, 27.807 ], "heli_params": [ -3.797, -0.134, 2.979, 10.633, 3.215, 28.317 ], "bp2_params": [ 0.040, -0.111, -0.403, -0.829, 1.884, 2.416 ], "groove_widths": [ 18.209, null, 15.731, null ], "simple_Rise": 3.262, "simple_Twist": 26.903, "simple_hRise": 2.967, "simple_hTwist": 27.430 }, { "index": 12, "nt1": "///A/643", "nt2": "///A/705", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.040, -0.111, -0.403, -0.829, 1.884, 2.416 ], "step_params": [ 0.274, -1.550, 3.094, -6.583, 12.480, 30.214 ], "heli_params": [ -4.478, -1.413, 2.195, 22.466, 11.851, 33.276 ], "bp2_params": [ -1.389, -0.593, 0.864, 1.194, 9.008, -2.212 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.094, "simple_Twist": 37.915, "simple_hRise": 2.408, "simple_hTwist": 40.364 }, { "index": 13, "nt1": "///A/644", "nt2": "///A/704", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.389, -0.593, 0.864, 1.194, 9.008, -2.212 ], "step_params": [ 0.482, -1.334, 3.132, 2.114, 5.345, 35.394 ], "heli_params": [ -2.882, -0.501, 2.929, 8.720, -3.449, 35.843 ], "bp2_params": [ 0.270, -0.206, 0.581, 6.816, 6.431, 2.076 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.132, "simple_Twist": 26.242, "simple_hRise": 2.838, "simple_hTwist": 26.854 }, { "index": 14, "nt1": "///A/645", "nt2": "///A/703", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 25, "num_stems": 2, "strand1": "AGGUUAGCAG", "strand2": "GCCGAGCGUA", "bp_type": ".|||..|||.", "helix_form": ".A..x.AA.", "helical_rise": 3.702, "helical_rise_std": 1.099, "helical_radius": 9.519, "helical_radius_std": 2.806, "helical_axis": [ -0.382, -0.045, 0.923 ], "point1": [ 144.781, 217.529, 136.606 ], "point2": [ 132.063, 216.047, 167.341 ], "num_pairs": 10, "pairs": [ { "index": 1, "nt1": "///A/647", "nt2": "///A/671", "bp": "A+G", "name": "Linker", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "bp1_params": [ 2.243, 7.942, -0.602, 25.327, 5.681, 139.879 ], "step_params": [ 1.784, -3.223, 3.684, 15.770, 15.823, -76.500 ], "heli_params": [ 2.023, 1.902, 3.822, -12.530, 12.488, -79.213 ], "bp2_params": [ -0.179, -0.310, -0.435, -3.332, 13.254, -3.673 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.684, "simple_Twist": -8.713, "simple_hRise": 2.300, "simple_hTwist": -23.959 }, { "index": 2, "nt1": "///A/648", "nt2": "///A/670", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.179, -0.310, -0.435, -3.332, 13.254, -3.673 ], "step_params": [ 0.758, -1.069, 3.048, -2.227, 5.166, 31.562 ], "heli_params": [ -2.772, -1.733, 2.783, 9.404, 4.053, 32.047 ], "bp2_params": [ -0.200, -0.162, -0.327, 5.591, 13.082, -3.648 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.048, "simple_Twist": 31.641, "simple_hRise": 2.784, "simple_hTwist": 32.125 }, { "index": 3, "nt1": "///A/649", "nt2": "///A/669", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.200, -0.162, -0.327, 5.591, 13.082, -3.648 ], "step_params": [ 1.061, -2.038, 3.418, 0.787, 3.278, 36.753 ], "heli_params": [ -3.673, -1.567, 3.251, 5.185, -1.244, 36.902 ], "bp2_params": [ 2.103, -0.443, -0.139, 7.360, 10.449, -3.020 ], "groove_widths": [ 18.782, null, 20.006, null ], "simple_Rise": 3.418, "simple_Twist": 24.246, "simple_hRise": 3.151, "simple_hTwist": 24.475 }, { "index": 4, "nt1": "///A/650", "nt2": "///A/668", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.103, -0.443, -0.139, 7.360, 10.449, -3.020 ], "step_params": [ -3.361, -3.135, 4.700, 5.361, -12.654, 36.997 ], "heli_params": [ -2.363, 5.956, 4.956, -19.150, -8.114, 39.383 ], "bp2_params": [ 4.696, -3.156, 0.134, -5.206, -10.147, -78.273 ], "groove_widths": [ 19.625, 15.591, 20.370, 19.051 ], "simple_Rise": 4.700, "simple_Twist": 18.134, "simple_hRise": 4.706, "simple_hTwist": 22.719 }, { "index": 5, "nt1": "///A/651", "nt2": "///A/667", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 4.696, -3.156, 0.134, -5.206, -10.147, -78.273 ], "step_params": [ 1.930, -0.748, 6.328, -5.204, 30.272, 28.755 ], "heli_params": [ -6.875, -3.705, 3.636, 47.192, 8.113, 41.837 ], "bp2_params": [ -6.352, -3.934, -1.322, -4.838, -10.168, -5.787 ], "groove_widths": [ 20.914, 18.154, 14.721, 14.528 ], "simple_Rise": 6.328, "simple_Twist": 101.142, "simple_hRise": 5.957, "simple_hTwist": 104.468 }, { "index": 6, "nt1": "///A/653", "nt2": "///A/665", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.352, -3.934, -1.322, -4.838, -10.168, -5.787 ], "step_params": [ -0.055, -0.297, 4.624, -0.268, -3.110, 61.141 ], "heli_params": [ -0.083, 0.036, 4.633, -3.055, 0.263, 61.213 ], "bp2_params": [ -0.057, -0.399, -1.433, -12.292, 1.760, -3.042 ], "groove_widths": [ 22.391, 18.564, 10.095, 9.936 ], "simple_Rise": 4.624, "simple_Twist": 19.625, "simple_hRise": 4.614, "simple_hTwist": 19.870 }, { "index": 7, "nt1": "///A/654", "nt2": "///A/664", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.057, -0.399, -1.433, -12.292, 1.760, -3.042 ], "step_params": [ -0.017, -1.009, 3.311, -4.600, 5.243, 31.151 ], "heli_params": [ -2.778, -0.796, 3.076, 9.612, 8.434, 31.903 ], "bp2_params": [ 0.193, -0.243, -0.666, 0.307, 2.354, -2.390 ], "groove_widths": [ 20.344, null, 13.984, null ], "simple_Rise": 3.311, "simple_Twist": 29.962, "simple_hRise": 3.063, "simple_hTwist": 30.745 }, { "index": 8, "nt1": "///A/655", "nt2": "///A/663", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.193, -0.243, -0.666, 0.307, 2.354, -2.390 ], "step_params": [ 1.042, -1.865, 3.212, -0.378, 10.495, 27.464 ], "heli_params": [ -5.661, -2.126, 2.341, 21.150, 0.761, 29.368 ], "bp2_params": [ 0.143, -0.099, 0.263, 2.269, 13.108, 0.576 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.212, "simple_Twist": 27.634, "simple_hRise": 2.347, "simple_hTwist": 29.526 }, { "index": 9, "nt1": "///A/656", "nt2": "///A/662", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.143, -0.099, 0.263, 2.269, 13.108, 0.576 ], "step_params": [ 0.185, -1.311, 2.885, 3.649, 5.077, 60.679 ], "heli_params": [ -1.503, -0.030, 2.784, 5.011, -3.601, 60.970 ], "bp2_params": [ 6.866, -4.423, 0.051, 13.054, 8.535, -5.192 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.885, "simple_Twist": 14.651, "simple_hRise": 2.283, "simple_hTwist": 15.923 }, { "index": 10, "nt1": "///A/657", "nt2": "///A/661", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 26, "num_stems": 1, "strand1": "GCG", "strand2": "CGA", "bp_type": "||.", "helix_form": "A.", "helical_rise": 2.588, "helical_rise_std": 0.184, "helical_radius": 8.457, "helical_radius_std": 2.056, "helical_axis": [ 0.691, -0.499, 0.523 ], "point1": [ 156.679, 218.097, 128.759 ], "point2": [ 160.238, 215.524, 131.453 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/674", "nt2": "///A/681", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.235, -0.156, 0.155, -3.873, 8.126, 1.727 ], "step_params": [ -0.131, -1.444, 3.124, 1.184, 4.185, 30.414 ], "heli_params": [ -3.486, 0.463, 2.897, 7.926, -2.242, 30.716 ], "bp2_params": [ 0.199, -0.154, -0.062, 5.357, 11.174, 0.590 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.124, "simple_Twist": 27.980, "simple_hRise": 2.873, "simple_hTwist": 28.309 }, { "index": 2, "nt1": "///A/675", "nt2": "///A/680", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.199, -0.154, -0.062, 5.357, 11.174, 0.590 ], "step_params": [ -3.790, -1.405, 3.140, 2.639, 2.299, 55.416 ], "heli_params": [ -1.632, 4.211, 2.915, 2.470, -2.835, 55.517 ], "bp2_params": [ 8.028, -5.418, -0.208, 23.480, 4.026, -46.174 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.140, "simple_Twist": 3.751, "simple_hRise": -0.283, "simple_hTwist": 5.130 }, { "index": 3, "nt1": "///A/676", "nt2": "///A/679", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 27, "num_stems": 1, "strand1": "AGUCUG", "strand2": "GCGGGA", "bp_type": ".||||.", "helix_form": ".....", "helical_rise": 3.400, "helical_rise_std": 0.542, "helical_radius": 8.955, "helical_radius_std": 1.605, "helical_axis": [ 0.732, 0.525, -0.435 ], "point1": [ 154.937, 200.378, 119.482 ], "point2": [ 167.396, 209.308, 112.084 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/683", "nt2": "///A/697", "bp": "A+G", "name": "Linker", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "bp1_params": [ 2.483, 7.779, -0.628, 17.655, -3.143, 150.023 ], "step_params": [ 1.414, -2.787, 4.131, 28.514, 22.981, -66.507 ], "heli_params": [ 1.338, 2.347, 4.005, -19.523, 24.224, -74.895 ], "bp2_params": [ -0.250, -0.194, -0.975, -12.771, -7.339, 2.073 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.131, "simple_Twist": 2.899, "simple_hRise": -0.314, "simple_hTwist": 36.733 }, { "index": 2, "nt1": "///A/684", "nt2": "///A/696", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.250, -0.194, -0.975, -12.771, -7.339, 2.073 ], "step_params": [ -0.216, -0.586, 2.753, -1.367, 3.867, 35.040 ], "heli_params": [ -1.446, 0.187, 2.682, 6.395, 2.261, 35.272 ], "bp2_params": [ 1.488, -0.589, -0.998, 3.518, -3.994, -3.778 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.753, "simple_Twist": 25.994, "simple_hRise": 2.647, "simple_hTwist": 26.310 }, { "index": 3, "nt1": "///A/685", "nt2": "///A/695", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.488, -0.589, -0.998, 3.518, -3.994, -3.778 ], "step_params": [ -0.302, -1.643, 2.969, -4.305, 19.598, 32.908 ], "heli_params": [ -4.422, 0.037, 1.775, 31.244, 6.864, 38.397 ], "bp2_params": [ 0.070, -0.180, -0.398, 6.756, 17.088, -0.963 ], "groove_widths": [ 18.252, null, 16.611, null ], "simple_Rise": 2.969, "simple_Twist": 40.071, "simple_hRise": 2.016, "simple_hTwist": 44.628 }, { "index": 4, "nt1": "///A/686", "nt2": "///A/694", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.070, -0.180, -0.398, 6.756, 17.088, -0.963 ], "step_params": [ -0.821, -1.466, 2.748, 5.539, 9.979, 30.460 ], "heli_params": [ -3.936, 2.197, 2.005, 18.210, -10.107, 32.480 ], "bp2_params": [ 1.277, -0.211, -0.967, 29.965, 26.318, -9.566 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.748, "simple_Twist": 23.023, "simple_hRise": 1.732, "simple_hTwist": 25.662 }, { "index": 5, "nt1": "///A/687", "nt2": "///A/693", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.277, -0.211, -0.967, 29.965, 26.318, -9.566 ], "step_params": [ 0.194, 1.045, 3.071, 6.096, 4.279, 54.775 ], "heli_params": [ 0.887, 0.133, 3.141, 4.627, -6.591, 55.240 ], "bp2_params": [ 7.413, -3.989, -0.077, 59.014, -15.311, -2.772 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.071, "simple_Twist": 11.530, "simple_hRise": 2.993, "simple_hTwist": 13.719 }, { "index": 6, "nt1": "///A/688", "nt2": "///A/692", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 28, "num_stems": 2, "strand1": "AAACCAGGUGGGUG", "strand2": "UAAGGUCCACCCGA", "bp_type": "...||||||||||.", "helix_form": ".x.AAAA.xxA.x", "helical_rise": 2.589, "helical_rise_std": 1.303, "helical_radius": 9.364, "helical_radius_std": 4.289, "helical_axis": [ 0.789, 0.325, 0.521 ], "point1": [ 170.449, 192.608, 180.588 ], "point2": [ 196.997, 203.522, 198.114 ], "num_pairs": 14, "pairs": [ { "index": 1, "nt1": "///A/722", "nt2": "///A/850", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.039, -1.634, -0.402, -0.141, -6.492, -100.528 ], "step_params": [ 0.351, -1.626, 3.037, 1.767, -4.813, 44.945 ], "heli_params": [ -1.705, -0.306, 3.196, -6.271, -2.302, 45.222 ], "bp2_params": [ -3.627, 1.864, -0.158, 4.763, -16.117, -103.444 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.037, "simple_Twist": 37.263, "simple_hRise": 3.227, "simple_hTwist": 37.601 }, { "index": 2, "nt1": "///A/723", "nt2": "///A/849", "bp": "A-A", "name": "--", "Saenger": "05-V", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -3.627, 1.864, -0.158, 4.763, -16.117, -103.444 ], "step_params": [ 4.525, -0.404, 4.376, -20.827, 15.092, -77.088 ], "heli_params": [ -0.287, 2.670, 5.264, -11.807, -16.294, -80.628 ], "bp2_params": [ -1.511, -2.164, -0.623, 13.760, -2.908, 167.706 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.376, "simple_Twist": 26.518, "simple_hRise": 0.502, "simple_hTwist": 36.781 }, { "index": 3, "nt1": "///A/724", "nt2": "///A/847", "bp": "A+A", "name": "--", "Saenger": "01-I", "LW": "tWW", "DSSR": "tW+W", "bp1_params": [ -1.511, -2.164, -0.623, 13.760, -2.908, 167.706 ], "step_params": [ 0.252, -1.662, 3.375, -2.618, -3.056, 122.506 ], "heli_params": [ -0.920, -0.168, 3.395, -1.742, 1.493, 122.545 ], "bp2_params": [ 0.190, -0.127, -0.271, -7.142, -5.095, 2.429 ], "groove_widths": [ 20.104, null, 16.566, null ], "simple_Rise": 3.375, "simple_Twist": 1.139, "simple_hRise": 1.977, "simple_hTwist": 4.182 }, { "index": 4, "nt1": "///A/725", "nt2": "///A/846", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.190, -0.127, -0.271, -7.142, -5.095, 2.429 ], "step_params": [ -0.359, -1.247, 3.590, -6.227, 2.734, 34.391 ], "heli_params": [ -2.521, -0.426, 3.493, 4.569, 10.405, 35.037 ], "bp2_params": [ 0.201, -0.183, -0.363, -2.371, -3.417, 0.040 ], "groove_widths": [ 19.153, 16.303, 16.873, 14.581 ], "simple_Rise": 3.590, "simple_Twist": 34.664, "simple_hRise": 3.495, "simple_hTwist": 35.304 }, { "index": 5, "nt1": "///A/726", "nt2": "///A/845", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.201, -0.183, -0.363, -2.371, -3.417, 0.040 ], "step_params": [ -0.685, -1.766, 3.077, -9.056, 7.291, 29.096 ], "heli_params": [ -4.529, -0.289, 2.658, 13.836, 17.186, 31.286 ], "bp2_params": [ -0.164, 0.166, 0.693, -4.703, 4.108, -5.061 ], "groove_widths": [ 17.445, 15.437, 15.587, 11.943 ], "simple_Rise": 3.077, "simple_Twist": 31.006, "simple_hRise": 2.694, "simple_hTwist": 33.064 }, { "index": 6, "nt1": "///A/727", "nt2": "///A/844", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.164, 0.166, 0.693, -4.703, 4.108, -5.061 ], "step_params": [ 0.295, -1.478, 3.122, -1.334, 3.609, 35.142 ], "heli_params": [ -2.930, -0.669, 2.948, 5.954, 2.201, 35.345 ], "bp2_params": [ -0.130, -0.221, 0.765, 0.370, 2.299, -0.676 ], "groove_widths": [ 17.138, 15.333, 14.341, 9.515 ], "simple_Rise": 3.122, "simple_Twist": 35.318, "simple_hRise": 2.949, "simple_hTwist": 35.520 }, { "index": 7, "nt1": "///A/728", "nt2": "///A/843", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.130, -0.221, 0.765, 0.370, 2.299, -0.676 ], "step_params": [ 0.449, -2.138, 3.152, 1.382, 8.375, 31.805 ], "heli_params": [ -5.044, -0.585, 2.539, 14.952, -2.468, 32.890 ], "bp2_params": [ -0.169, -0.235, 0.624, -3.402, -9.195, -1.445 ], "groove_widths": [ 18.919, 15.708, 13.606, 11.161 ], "simple_Rise": 3.152, "simple_Twist": 31.628, "simple_hRise": 2.535, "simple_hTwist": 32.719 }, { "index": 8, "nt1": "///A/729", "nt2": "///A/842", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.169, -0.235, 0.624, -3.402, -9.195, -1.445 ], "step_params": [ -0.993, -1.662, 3.312, 0.613, -0.530, 40.559 ], "heli_params": [ -2.338, 1.502, 3.318, -0.764, -0.883, 40.567 ], "bp2_params": [ -0.152, -0.094, 0.385, -8.863, -7.710, -5.116 ], "groove_widths": [ 21.353, 16.038, 26.294, 25.304 ], "simple_Rise": 3.312, "simple_Twist": 40.408, "simple_hRise": 3.318, "simple_hTwist": 40.416 }, { "index": 9, "nt1": "///A/730", "nt2": "///A/841", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.152, -0.094, 0.385, -8.863, -7.710, -5.116 ], "step_params": [ 1.336, -6.431, 3.596, 19.320, 8.394, -42.857 ], "heli_params": [ 7.166, 3.527, 3.825, -10.748, 24.738, -47.535 ], "bp2_params": [ -0.200, -0.185, 0.129, 15.547, 7.333, -1.336 ], "groove_widths": [ 20.575, 13.519, 24.972, 21.750 ], "simple_Rise": 3.596, "simple_Twist": -44.437, "simple_hRise": 3.829, "simple_hTwist": -48.948 }, { "index": 10, "nt1": "///A/822", "nt2": "///A/838", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.200, -0.185, 0.129, 15.547, 7.333, -1.336 ], "step_params": [ 0.647, 2.744, 3.203, 1.732, 16.641, -41.872 ], "heli_params": [ -4.832, 0.976, 2.000, -22.249, 2.316, -44.951 ], "bp2_params": [ -0.198, -0.125, -0.405, -12.037, -5.088, 0.440 ], "groove_widths": [ 18.873, 14.698, 25.803, 12.341 ], "simple_Rise": 3.203, "simple_Twist": -40.149, "simple_hRise": 1.942, "simple_hTwist": -43.362 }, { "index": 11, "nt1": "///A/824", "nt2": "///A/834", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.198, -0.125, -0.405, -12.037, -5.088, 0.440 ], "step_params": [ -0.563, -1.494, 3.840, -2.066, 1.831, 30.095 ], "heli_params": [ -3.299, 0.592, 3.774, 3.517, 3.968, 30.218 ], "bp2_params": [ 0.211, 0.295, -1.339, -12.980, 0.703, -0.401 ], "groove_widths": [ 20.911, null, 22.565, null ], "simple_Rise": 3.840, "simple_Twist": 28.082, "simple_hRise": 3.768, "simple_hTwist": 28.215 }, { "index": 12, "nt1": "///A/825", "nt2": "///A/833", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.211, 0.295, -1.339, -12.980, 0.703, -0.401 ], "step_params": [ -0.040, -1.094, 3.053, -2.604, 4.434, 41.132 ], "heli_params": [ -1.980, -0.198, 2.922, 6.282, 3.688, 41.438 ], "bp2_params": [ 2.487, -0.517, -0.436, 1.152, 6.784, -2.139 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.053, "simple_Twist": 28.818, "simple_hRise": 2.849, "simple_hTwist": 29.263 }, { "index": 13, "nt1": "///A/826", "nt2": "///A/832", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.487, -0.517, -0.436, 1.152, 6.784, -2.139 ], "step_params": [ -0.597, -1.355, 3.240, 3.742, 9.245, 37.390 ], "heli_params": [ -3.110, 1.333, 2.770, 14.116, -5.714, 38.651 ], "bp2_params": [ 7.254, -2.850, 0.007, 4.196, -6.642, 15.832 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.240, "simple_Twist": 5.144, "simple_hRise": 0.173, "simple_hTwist": 11.219 }, { "index": 14, "nt1": "///A/827", "nt2": "///A/830", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 29, "num_stems": 1, "strand1": "CUACCCAUGUCC", "strand2": "AAUGGGUGUGGG", "bp_type": "..||||||||||", "helix_form": "xxAA.A....x", "helical_rise": 2.360, "helical_rise_std": 0.883, "helical_radius": 10.394, "helical_radius_std": 3.670, "helical_axis": [ 0.743, 0.171, 0.647 ], "point1": [ 191.500, 197.546, 203.969 ], "point2": [ 210.437, 201.897, 220.455 ], "num_pairs": 12, "pairs": [ { "index": 1, "nt1": "///A/734", "nt2": "///A/1809", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "bp1_params": [ 6.372, -0.328, 0.688, -6.768, -24.374, 43.647 ], "step_params": [ 1.491, -7.333, 4.156, -7.086, 8.057, 157.100 ], "heli_params": [ -3.770, -0.787, 4.033, 4.110, 3.614, 157.201 ], "bp2_params": [ 5.261, -0.791, -0.483, -13.465, 2.990, -156.921 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.156, "simple_Twist": 156.328, "simple_hRise": 4.028, "simple_hTwist": 156.434 }, { "index": 2, "nt1": "///A/735", "nt2": "///A/732", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 5.261, -0.791, -0.483, -13.465, 2.990, -156.921 ], "step_params": [ -0.356, 0.239, 3.847, 2.209, 28.176, -51.578 ], "heli_params": [ -1.996, -0.228, 3.339, -29.966, 2.349, -58.346 ], "bp2_params": [ 0.043, -0.103, 0.543, -4.781, -2.082, -4.038 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.847, "simple_Twist": -11.960, "simple_hRise": 1.324, "simple_hTwist": -30.642 }, { "index": 3, "nt1": "///A/736", "nt2": "///A/820", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.043, -0.103, 0.543, -4.781, -2.082, -4.038 ], "step_params": [ 0.099, -1.254, 3.547, -3.013, 2.260, 29.531 ], "heli_params": [ -2.947, -0.867, 3.416, 4.411, 5.882, 29.765 ], "bp2_params": [ 0.202, -0.159, 0.385, 1.018, 4.440, 1.885 ], "groove_widths": [ 21.483, null, 17.615, null ], "simple_Rise": 3.547, "simple_Twist": 28.912, "simple_hRise": 3.413, "simple_hTwist": 29.152 }, { "index": 4, "nt1": "///A/737", "nt2": "///A/819", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.202, -0.159, 0.385, 1.018, 4.440, 1.885 ], "step_params": [ 0.435, -2.117, 3.186, -3.584, 0.096, 33.462 ], "heli_params": [ -3.672, -1.317, 3.118, 0.166, 6.202, 33.648 ], "bp2_params": [ 0.247, -0.235, 0.611, 6.736, 2.999, 0.662 ], "groove_widths": [ 19.136, 17.057, 18.009, 12.508 ], "simple_Rise": 3.186, "simple_Twist": 33.502, "simple_hRise": 3.118, "simple_hTwist": 33.688 }, { "index": 5, "nt1": "///A/738", "nt2": "///A/818", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.247, -0.235, 0.611, 6.736, 2.999, 0.662 ], "step_params": [ -0.705, -2.464, 3.229, 4.677, 3.627, 27.438 ], "heli_params": [ -5.871, 2.470, 2.732, 7.536, -9.717, 28.058 ], "bp2_params": [ 0.199, -0.109, -0.029, 3.607, 0.235, 0.900 ], "groove_widths": [ 17.248, 14.359, 17.464, 13.410 ], "simple_Rise": 3.229, "simple_Twist": 27.457, "simple_hRise": 2.732, "simple_hTwist": 28.075 }, { "index": 6, "nt1": "///A/739", "nt2": "///A/817", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.199, -0.109, -0.029, 3.607, 0.235, 0.900 ], "step_params": [ -0.164, -1.765, 3.099, -0.356, 16.415, 35.167 ], "heli_params": [ -4.349, 0.210, 2.102, 25.521, 0.554, 38.701 ], "bp2_params": [ 0.045, -0.073, 0.359, 1.888, -0.646, -0.788 ], "groove_widths": [ 17.423, 15.771, 15.471, 11.497 ], "simple_Rise": 3.099, "simple_Twist": 35.865, "simple_hRise": 2.125, "simple_hTwist": 39.331 }, { "index": 7, "nt1": "///A/740", "nt2": "///A/816", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.045, -0.073, 0.359, 1.888, -0.646, -0.788 ], "step_params": [ 0.359, -1.525, 3.584, 2.560, 1.190, 38.641 ], "heli_params": [ -2.458, -0.199, 3.553, 1.796, -3.862, 38.740 ], "bp2_params": [ 2.084, -0.380, 0.451, -0.807, -0.765, -3.372 ], "groove_widths": [ 17.394, 15.950, 16.448, 12.425 ], "simple_Rise": 3.584, "simple_Twist": 27.754, "simple_hRise": 3.534, "simple_hTwist": 27.895 }, { "index": 8, "nt1": "///A/741", "nt2": "///A/815", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.084, -0.380, 0.451, -0.807, -0.765, -3.372 ], "step_params": [ 0.750, -2.813, 3.160, 10.930, 7.568, 13.578 ], "heli_params": [ -11.851, 2.522, 1.579, 25.384, -36.661, 18.981 ], "bp2_params": [ -2.042, -0.368, -0.579, -1.967, -1.154, -1.791 ], "groove_widths": [ 16.952, 15.553, 17.191, 14.309 ], "simple_Rise": 3.160, "simple_Twist": 35.842, "simple_hRise": 2.643, "simple_hTwist": 38.153 }, { "index": 9, "nt1": "///A/742", "nt2": "///A/814", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.042, -0.368, -0.579, -1.967, -1.154, -1.791 ], "step_params": [ 0.170, -1.119, 3.319, -2.919, 2.823, 46.873 ], "heli_params": [ -1.635, -0.454, 3.235, 3.541, 3.661, 47.038 ], "bp2_params": [ 2.020, -0.361, 0.156, 0.094, -0.244, -1.390 ], "groove_widths": [ 16.679, null, 17.461, null ], "simple_Rise": 3.319, "simple_Twist": 24.855, "simple_hRise": 3.134, "simple_hTwist": 25.180 }, { "index": 10, "nt1": "///A/743", "nt2": "///A/813", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.020, -0.361, 0.156, 0.094, -0.244, -1.390 ], "step_params": [ -0.363, -1.802, 3.294, 2.706, 1.920, 29.507 ], "heli_params": [ -3.913, 1.268, 3.128, 3.754, -5.291, 29.689 ], "bp2_params": [ 0.154, -0.140, 0.219, -1.782, 6.426, -1.400 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.294, "simple_Twist": 39.549, "simple_hRise": 3.176, "simple_hTwist": 39.682 }, { "index": 11, "nt1": "///A/744", "nt2": "///A/812", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.154, -0.140, 0.219, -1.782, 6.426, -1.400 ], "step_params": [ -0.429, -1.278, 3.127, -0.439, 6.943, 19.879 ], "heli_params": [ -6.105, 1.009, 2.547, 19.360, 1.225, 21.050 ], "bp2_params": [ 0.214, -0.227, 0.670, 7.271, 5.953, 2.012 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.127, "simple_Twist": 19.456, "simple_hRise": 2.531, "simple_hTwist": 20.651 }, { "index": 12, "nt1": "///A/745", "nt2": "///A/810", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 30, "num_stems": 4, "strand1": "ACUGAAUGGAGCCCGCCCCGCACGU", "strand2": "GGACUUGAAGUGGGAGGGGCGUGAG", "bp_type": ".||||||...||||.||||||||..", "helix_form": "..AAAA....x.A.xAAx.AAAxx", "helical_rise": 3.182, "helical_rise_std": 1.179, "helical_radius": 9.233, "helical_radius_std": 3.118, "helical_axis": [ -0.861, -0.447, -0.244 ], "point1": [ 247.632, 201.116, 234.164 ], "point2": [ 181.902, 166.961, 215.520 ], "num_pairs": 25, "pairs": [ { "index": 1, "nt1": "///A/765", "nt2": "///A/760", "bp": "A+G", "name": "--", "Saenger": "10-X", "LW": "tWS", "DSSR": "tW+m", "bp1_params": [ -2.759, 3.430, 2.070, -17.472, 2.699, 75.198 ], "step_params": [ -0.644, 1.030, 2.781, 0.921, 2.291, -60.428 ], "heli_params": [ -1.117, -0.601, 2.753, -2.276, 0.915, -60.474 ], "bp2_params": [ 1.458, 0.345, -1.376, 6.960, 9.554, 26.481 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.781, "simple_Twist": 18.176, "simple_hRise": 2.852, "simple_hTwist": 18.342 }, { "index": 2, "nt1": "///A/766", "nt2": "///A/759", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.458, 0.345, -1.376, 6.960, 9.554, 26.481 ], "step_params": [ -1.219, -2.103, 3.452, -3.756, 10.442, 23.460 ], "heli_params": [ -7.438, 1.729, 2.468, 24.033, 8.643, 25.919 ], "bp2_params": [ 0.031, -0.219, -0.082, -1.994, 9.569, 4.795 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.452, "simple_Twist": 32.112, "simple_hRise": 2.773, "simple_hTwist": 33.928 }, { "index": 3, "nt1": "///A/767", "nt2": "///A/758", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.031, -0.219, -0.082, -1.994, 9.569, 4.795 ], "step_params": [ 0.013, -1.583, 3.004, 4.134, 11.704, 31.889 ], "heli_params": [ -4.246, 0.526, 2.282, 20.364, -7.193, 34.161 ], "bp2_params": [ -0.185, -0.168, -0.213, -3.441, -0.894, 0.971 ], "groove_widths": [ 17.326, null, 16.530, null ], "simple_Rise": 3.004, "simple_Twist": 33.036, "simple_hRise": 2.312, "simple_hTwist": 35.230 }, { "index": 4, "nt1": "///A/768", "nt2": "///A/757", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.185, -0.168, -0.213, -3.441, -0.894, 0.971 ], "step_params": [ -0.125, -1.395, 2.948, -0.390, 3.951, 32.873 ], "heli_params": [ -3.033, 0.162, 2.768, 6.950, 0.686, 33.105 ], "bp2_params": [ 0.007, -0.174, -0.322, 0.907, -1.210, 1.483 ], "groove_widths": [ 16.947, 15.486, 15.762, 12.852 ], "simple_Rise": 2.948, "simple_Twist": 31.751, "simple_hRise": 2.760, "simple_hTwist": 31.992 }, { "index": 5, "nt1": "///A/769", "nt2": "///A/756", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.007, -0.174, -0.322, 0.907, -1.210, 1.483 ], "step_params": [ -0.057, -1.646, 3.041, -4.421, 12.865, 32.001 ], "heli_params": [ -4.415, -0.473, 2.224, 22.128, 7.605, 34.703 ], "bp2_params": [ -0.013, -0.184, -0.058, -3.049, 1.942, 3.800 ], "groove_widths": [ 16.775, 15.188, 15.322, 12.411 ], "simple_Rise": 3.041, "simple_Twist": 32.082, "simple_hRise": 2.226, "simple_hTwist": 34.777 }, { "index": 6, "nt1": "///A/770", "nt2": "///A/755", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.013, -0.184, -0.058, -3.049, 1.942, 3.800 ], "step_params": [ -0.146, -1.759, 3.120, -0.417, 2.694, 36.310 ], "heli_params": [ -3.165, 0.180, 2.987, 4.316, 0.669, 36.409 ], "bp2_params": [ 0.953, -0.520, 0.031, 0.031, 4.476, 1.215 ], "groove_widths": [ 16.676, 15.110, 13.226, 11.356 ], "simple_Rise": 3.120, "simple_Twist": 30.735, "simple_hRise": 2.960, "simple_hTwist": 30.853 }, { "index": 7, "nt1": "///A/771", "nt2": "///A/754", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.953, -0.520, 0.031, 0.031, 4.476, 1.215 ], "step_params": [ -0.231, -0.624, 3.013, 5.115, 4.387, 60.242 ], "heli_params": [ -0.813, 0.455, 2.939, 4.356, -5.079, 60.583 ], "bp2_params": [ 6.745, -3.984, -0.105, 6.489, 1.693, 4.369 ], "groove_widths": [ 16.837, 15.414, 11.749, 11.087 ], "simple_Rise": 3.013, "simple_Twist": 19.709, "simple_hRise": 2.668, "simple_hTwist": 20.818 }, { "index": 8, "nt1": "///A/772", "nt2": "///A/753", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.745, -3.984, -0.105, 6.489, 1.693, 4.369 ], "step_params": [ -0.133, 0.447, 3.837, 16.303, 4.506, 32.315 ], "heli_params": [ -0.025, 2.894, 3.417, 7.491, -27.100, 36.370 ], "bp2_params": [ 6.670, -4.650, 0.102, 18.728, -1.211, -4.347 ], "groove_widths": [ 16.433, 14.681, 13.073, 13.054 ], "simple_Rise": 3.837, "simple_Twist": 31.310, "simple_hRise": 3.393, "simple_hTwist": 35.486 }, { "index": 9, "nt1": "///A/773", "nt2": "///A/752", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.670, -4.650, 0.102, 18.728, -1.211, -4.347 ], "step_params": [ 0.813, -1.256, 4.378, -3.909, -9.604, -8.636 ], "heli_params": [ 17.385, -1.437, 2.149, 46.602, -18.970, -13.487 ], "bp2_params": [ -6.642, -4.558, 0.665, -11.888, 26.606, 0.544 ], "groove_widths": [ 17.974, 15.210, 15.415, 15.379 ], "simple_Rise": 4.378, "simple_Twist": 86.234, "simple_hRise": 4.440, "simple_hTwist": 86.734 }, { "index": 10, "nt1": "///A/774", "nt2": "///A/751", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.642, -4.558, 0.665, -11.888, 26.606, 0.544 ], "step_params": [ -0.559, -0.104, 3.378, 1.976, 6.964, 45.697 ], "heli_params": [ -0.742, 0.885, 3.303, 8.901, -2.526, 46.237 ], "bp2_params": [ -2.656, -0.751, -0.159, 9.799, 12.795, -10.882 ], "groove_widths": [ 19.009, 16.938, 15.711, 15.646 ], "simple_Rise": 3.378, "simple_Twist": 12.201, "simple_hRise": 2.780, "simple_hTwist": 14.180 }, { "index": 11, "nt1": "///A/775", "nt2": "///A/750", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.656, -0.751, -0.159, 9.799, 12.795, -10.882 ], "step_params": [ 0.606, -1.040, 3.119, 2.344, 10.249, 46.047 ], "heli_params": [ -2.076, -0.580, 2.864, 12.905, -2.951, 47.169 ], "bp2_params": [ 0.031, -0.152, -0.976, 17.426, 4.746, -3.349 ], "groove_widths": [ 17.121, 16.041, 16.225, 15.973 ], "simple_Rise": 3.119, "simple_Twist": 31.329, "simple_hRise": 2.692, "simple_hTwist": 33.004 }, { "index": 12, "nt1": "///A/777", "nt2": "///A/749", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.031, -0.152, -0.976, 17.426, 4.746, -3.349 ], "step_params": [ -0.253, -2.165, 3.999, -0.869, -1.209, 30.874 ], "heli_params": [ -3.774, 0.266, 4.084, -2.268, 1.631, 30.909 ], "bp2_params": [ 0.106, -0.221, -0.882, 3.648, -2.427, 1.390 ], "groove_widths": [ 16.673, 14.977, 20.524, 20.268 ], "simple_Rise": 3.999, "simple_Twist": 30.281, "simple_hRise": 4.086, "simple_hTwist": 30.317 }, { "index": 13, "nt1": "///A/778", "nt2": "///A/748", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.106, -0.221, -0.882, 3.648, -2.427, 1.390 ], "step_params": [ -0.433, -1.903, 3.240, -1.292, 12.661, 30.707 ], "heli_params": [ -5.211, 0.567, 2.313, 22.722, 2.318, 33.181 ], "bp2_params": [ 0.142, -0.130, -0.379, 6.254, 7.636, -0.604 ], "groove_widths": [ 21.181, 15.229, 17.173, 14.218 ], "simple_Rise": 3.240, "simple_Twist": 30.870, "simple_hRise": 2.318, "simple_hTwist": 33.332 }, { "index": 14, "nt1": "///A/779", "nt2": "///A/747", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.142, -0.130, -0.379, 6.254, 7.636, -0.604 ], "step_params": [ -0.600, -1.234, 4.067, 3.631, 1.841, 51.670 ], "heli_params": [ -1.565, 0.988, 3.977, 2.109, -4.158, 51.819 ], "bp2_params": [ 6.713, -3.245, -1.232, 8.032, -1.517, -10.938 ], "groove_widths": [ 25.278, 12.945, 7.853, 6.288 ], "simple_Rise": 4.067, "simple_Twist": 12.136, "simple_hRise": 3.511, "simple_hTwist": 12.798 }, { "index": 15, "nt1": "///A/780", "nt2": "///A/746", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.713, -3.245, -1.232, 8.032, -1.517, -10.938 ], "step_params": [ 0.192, -4.632, 8.419, 18.512, 24.128, 121.467 ], "heli_params": [ -3.160, 0.300, 7.812, 13.730, -10.534, 123.703 ], "bp2_params": [ 0.160, -0.231, -0.692, -7.123, 5.062, -1.881 ], "groove_widths": [ 24.845, 8.044, 9.175, 7.103 ], "simple_Rise": 8.419, "simple_Twist": 160.912, "simple_hRise": 8.254, "simple_hTwist": 161.586 }, { "index": 16, "nt1": "///A/783", "nt2": "///A/807", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.160, -0.231, -0.692, -7.123, 5.062, -1.881 ], "step_params": [ 0.173, -1.486, 3.038, -3.192, 5.641, 32.401 ], "heli_params": [ -3.464, -0.786, 2.719, 9.984, 5.650, 33.026 ], "bp2_params": [ 0.189, -0.185, -0.367, 2.103, 11.513, -0.252 ], "groove_widths": [ 26.501, 9.500, 8.703, 6.966 ], "simple_Rise": 3.038, "simple_Twist": 32.174, "simple_hRise": 2.716, "simple_hTwist": 32.803 }, { "index": 17, "nt1": "///A/784", "nt2": "///A/806", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.189, -0.185, -0.367, 2.103, 11.513, -0.252 ], "step_params": [ 0.246, -2.040, 3.002, 4.879, 13.866, 34.228 ], "heli_params": [ -4.697, 0.140, 2.065, 22.327, -7.856, 37.164 ], "bp2_params": [ 0.107, -0.154, -0.770, 3.799, 2.598, -1.004 ], "groove_widths": [ 22.667, 12.815, 16.467, 14.481 ], "simple_Rise": 3.002, "simple_Twist": 34.582, "simple_hRise": 2.076, "simple_hTwist": 37.488 }, { "index": 18, "nt1": "///A/785", "nt2": "///A/805", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.107, -0.154, -0.770, 3.799, 2.598, -1.004 ], "step_params": [ -3.379, -2.549, 4.289, 8.575, -0.333, 54.057 ], "heli_params": [ -2.750, 4.317, 3.768, -0.364, -9.368, 54.683 ], "bp2_params": [ 0.153, -0.365, -1.117, -2.078, -1.508, 1.590 ], "groove_widths": [ 16.883, 13.285, 17.802, 16.177 ], "simple_Rise": 4.289, "simple_Twist": 53.869, "simple_hRise": 3.765, "simple_hTwist": 54.497 }, { "index": 19, "nt1": "///A/787", "nt2": "///A/804", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.153, -0.365, -1.117, -2.078, -1.508, 1.590 ], "step_params": [ -0.825, -1.861, 3.826, -4.013, 4.580, 23.559 ], "heli_params": [ -6.056, 0.522, 3.496, 10.983, 9.624, 24.322 ], "bp2_params": [ -0.197, -0.136, -0.147, -5.710, 5.959, 0.093 ], "groove_widths": [ 17.540, 15.543, 16.575, 15.492 ], "simple_Rise": 3.826, "simple_Twist": 25.547, "simple_hRise": 3.530, "simple_hTwist": 26.251 }, { "index": 20, "nt1": "///A/788", "nt2": "///A/803", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.197, -0.136, -0.147, -5.710, 5.959, 0.093 ], "step_params": [ 0.434, -1.024, 3.212, -1.516, 7.363, 30.181 ], "heli_params": [ -3.242, -1.084, 2.863, 13.872, 2.857, 31.082 ], "bp2_params": [ 0.230, -0.147, 0.152, 3.637, 7.703, 1.816 ], "groove_widths": [ 18.606, 17.228, 14.991, 11.134 ], "simple_Rise": 3.212, "simple_Twist": 27.985, "simple_hRise": 2.829, "simple_hTwist": 28.958 }, { "index": 21, "nt1": "///A/789", "nt2": "///A/802", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.230, -0.147, 0.152, 3.637, 7.703, 1.816 ], "step_params": [ 0.314, -1.549, 3.222, 0.965, 18.235, 36.219 ], "heli_params": [ -4.053, -0.359, 2.230, 27.303, -1.445, 40.423 ], "bp2_params": [ 0.076, -0.108, 0.370, -5.162, 1.514, -2.111 ], "groove_widths": [ 18.379, 16.681, 14.945, 14.862 ], "simple_Rise": 3.222, "simple_Twist": 37.048, "simple_hRise": 2.257, "simple_hTwist": 41.162 }, { "index": 22, "nt1": "///A/790", "nt2": "///A/801", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.076, -0.108, 0.370, -5.162, 1.514, -2.111 ], "step_params": [ 0.004, -1.717, 3.220, -1.228, 1.576, 32.302 ], "heli_params": [ -3.351, -0.219, 3.132, 2.829, 2.205, 32.362 ], "bp2_params": [ 0.205, -0.188, 0.494, -1.533, 7.980, 1.779 ], "groove_widths": [ 17.925, null, 25.823, null ], "simple_Rise": 3.220, "simple_Twist": 31.418, "simple_hRise": 3.130, "simple_hTwist": 31.480 }, { "index": 23, "nt1": "///A/791", "nt2": "///A/800", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.205, -0.188, 0.494, -1.533, 7.980, 1.779 ], "step_params": [ -0.884, -1.213, 3.315, 17.661, 6.099, 77.381 ], "heli_params": [ -1.113, 1.163, 3.004, 4.813, -13.937, 79.259 ], "bp2_params": [ 3.748, -3.274, 0.014, -9.574, 15.537, -69.589 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.315, "simple_Twist": -13.874, "simple_hRise": 2.973, "simple_hTwist": -23.236 }, { "index": 24, "nt1": "///A/792", "nt2": "///A/797", "bp": "G+A", "name": "--", "Saenger": "10-X", "LW": "tSW", "DSSR": "tm+W", "bp1_params": [ 3.748, -3.274, 0.014, -9.574, 15.537, -69.589 ], "step_params": [ 0.305, -0.648, 3.886, 3.584, 9.240, 96.632 ], "heli_params": [ -0.617, -0.132, 3.837, 6.174, -2.395, 97.013 ], "bp2_params": [ -4.501, -8.634, 1.766, 14.965, -7.083, -163.420 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.886, "simple_Twist": -55.317, "simple_hRise": 3.915, "simple_hTwist": -56.128 }, { "index": 25, "nt1": "///A/793", "nt2": "///A/795", "bp": "U-G", "name": "--", "Saenger": "--", "LW": ".SS", "DSSR": ".m-m" } ] }, { "index": 31, "num_stems": 1, "strand1": "GACAAA", "strand2": "CUGUUU", "bp_type": "|.||..", "helix_form": "xx.x.", "helical_rise": 3.491, "helical_rise_std": 0.651, "helical_radius": 8.357, "helical_radius_std": 3.049, "helical_axis": [ -0.852, -0.513, 0.103 ], "point1": [ 220.239, 190.053, 204.916 ], "point2": [ 205.446, 181.139, 206.708 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/776", "nt2": "///A/1803", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.218, -0.165, -0.953, -17.376, -4.471, 2.012 ], "step_params": [ -4.836, -2.390, 4.221, -0.727, 4.705, -96.592 ], "heli_params": [ 1.495, -3.253, 4.278, -3.150, -0.487, -96.680 ], "bp2_params": [ 0.567, -3.731, 0.576, -1.466, 11.756, 74.643 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.221, "simple_Twist": 42.998, "simple_hRise": 4.027, "simple_hTwist": 43.249 }, { "index": 2, "nt1": "///A/811", "nt2": "///A/1804", "bp": "A+U", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ 0.567, -3.731, 0.576, -1.466, 11.756, 74.643 ], "step_params": [ 1.784, 6.036, 3.728, 1.434, -16.494, -142.547 ], "heli_params": [ -3.084, 0.949, 4.009, 8.701, 0.756, -142.951 ], "bp2_params": [ 0.146, -0.244, 0.860, -7.549, -3.767, -0.582 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.728, "simple_Twist": 79.394, "simple_hRise": 2.672, "simple_hTwist": 80.822 }, { "index": 3, "nt1": "///A/1817", "nt2": "///A/1805", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.146, -0.244, 0.860, -7.549, -3.767, -0.582 ], "step_params": [ 0.193, 2.007, 3.288, -3.991, 0.551, 42.377 ], "heli_params": [ 2.709, -0.671, 3.283, 0.760, 5.506, 42.559 ], "bp2_params": [ 0.018, -0.158, 0.239, -0.943, -6.743, 0.296 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.288, "simple_Twist": 42.012, "simple_hRise": 3.282, "simple_hTwist": 42.196 }, { "index": 4, "nt1": "///A/1816", "nt2": "///A/1806", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.018, -0.158, 0.239, -0.943, -6.743, 0.296 ], "step_params": [ 3.384, 2.001, 3.542, 4.706, 2.728, 66.712 ], "heli_params": [ 1.695, -2.861, 3.815, 2.476, -4.272, 66.907 ], "bp2_params": [ -3.732, -1.215, 0.426, -6.853, -12.500, -90.758 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.542, "simple_Twist": 45.538, "simple_hRise": 3.961, "simple_hTwist": 45.845 }, { "index": 5, "nt1": "///A/1814", "nt2": "///A/1807", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -3.732, -1.215, 0.426, -6.853, -12.500, -90.758 ], "step_params": [ 1.346, -2.558, 3.488, -1.937, -21.018, -134.771 ], "heli_params": [ 1.521, 0.714, 3.294, 11.362, -1.047, -135.578 ], "bp2_params": [ 7.635, -4.925, 0.969, -5.975, 16.726, 177.259 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.488, "simple_Twist": 49.432, "simple_hRise": 4.137, "simple_hTwist": 53.488 }, { "index": 6, "nt1": "///A/1813", "nt2": "///A/1808", "bp": "A+U", "name": "--", "Saenger": "--", "LW": "tHH", "DSSR": "tM+M" } ] }, { "index": 32, "num_stems": 4, "strand1": "GCUAGCCUCAAGGAGAGUCUGGA", "strand2": "CGAUUGGGGUUCCUUUCAGACCG", "bp_type": "|||||||||||||.|||||....", "helix_form": ".A.x.x..AAA.xx.AAAxx..", "helical_rise": 1.658, "helical_rise_std": 3.245, "helical_radius": 11.343, "helical_radius_std": 5.910, "helical_axis": [ -0.335, -0.471, -0.816 ], "point1": [ 165.420, 183.358, 152.284 ], "point2": [ 153.298, 166.340, 122.779 ], "num_pairs": 23, "pairs": [ { "index": 1, "nt1": "///A/879", "nt2": "///A/872", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.130, -0.386, -1.273, -13.529, 11.625, -1.779 ], "step_params": [ -0.286, -2.021, 3.149, -2.798, 4.603, 34.897 ], "heli_params": [ -3.965, 0.087, 2.881, 7.619, 4.632, 35.298 ], "bp2_params": [ 0.154, -0.305, -0.777, -4.629, 15.961, -1.832 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.149, "simple_Twist": 33.258, "simple_hRise": 2.866, "simple_hTwist": 33.679 }, { "index": 2, "nt1": "///A/880", "nt2": "///A/871", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.154, -0.305, -0.777, -4.629, 15.961, -1.832 ], "step_params": [ -0.155, -1.689, 3.103, 1.309, 7.684, 27.128 ], "heli_params": [ -5.039, 0.585, 2.528, 15.967, -2.721, 28.205 ], "bp2_params": [ -0.050, -0.111, -0.445, 3.642, 7.534, -4.507 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.103, "simple_Twist": 28.473, "simple_hRise": 2.560, "simple_hTwist": 29.499 }, { "index": 3, "nt1": "///A/881", "nt2": "///A/870", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.050, -0.111, -0.445, 3.642, 7.534, -4.507 ], "step_params": [ 1.359, -1.711, 3.284, -1.335, 12.839, 35.776 ], "heli_params": [ -4.125, -2.244, 2.495, 20.110, 2.091, 37.962 ], "bp2_params": [ 0.040, -0.076, 0.349, -10.470, 5.331, 2.047 ], "groove_widths": [ 16.938, null, 11.424, null ], "simple_Rise": 3.284, "simple_Twist": 35.304, "simple_hRise": 2.483, "simple_hTwist": 37.519 }, { "index": 4, "nt1": "///A/882", "nt2": "///A/869", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.040, -0.076, 0.349, -10.470, 5.331, 2.047 ], "step_params": [ 2.930, -1.499, 2.650, -12.896, -4.848, 52.544 ], "heli_params": [ -1.428, -3.794, 2.052, -5.372, 14.290, 54.196 ], "bp2_params": [ -1.793, -0.635, 1.595, 13.402, 16.041, -7.890 ], "groove_widths": [ 17.660, 14.548, 11.825, 10.731 ], "simple_Rise": 2.650, "simple_Twist": 62.037, "simple_hRise": 2.165, "simple_hTwist": 63.400 }, { "index": 5, "nt1": "///A/883", "nt2": "///A/989", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.793, -0.635, 1.595, 13.402, 16.041, -7.890 ], "step_params": [ 0.665, -1.418, 3.335, 3.135, 7.847, 41.723 ], "heli_params": [ -2.740, -0.603, 3.072, 10.884, -4.348, 42.532 ], "bp2_params": [ 0.225, -0.402, 1.006, 15.055, 6.017, 2.100 ], "groove_widths": [ 19.620, 14.220, 13.727, 13.423 ], "simple_Rise": 3.335, "simple_Twist": 30.790, "simple_hRise": 2.946, "simple_hTwist": 31.901 }, { "index": 6, "nt1": "///A/884", "nt2": "///A/988", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.225, -0.402, 1.006, 15.055, 6.017, 2.100 ], "step_params": [ 1.843, -3.418, 6.049, -9.325, 3.601, 45.405 ], "heli_params": [ -4.871, -3.723, 5.320, 4.599, 11.911, 46.436 ], "bp2_params": [ 0.184, -0.173, 0.386, 2.013, 5.959, 1.366 ], "groove_widths": [ 20.607, 15.963, 14.738, 12.211 ], "simple_Rise": 6.049, "simple_Twist": 45.720, "simple_hRise": 5.326, "simple_hTwist": 46.743 }, { "index": 7, "nt1": "///A/885", "nt2": "///A/986", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.184, -0.173, 0.386, 2.013, 5.959, 1.366 ], "step_params": [ 0.166, -1.867, 3.161, 3.155, 2.338, 39.005 ], "heli_params": [ -3.050, 0.111, 3.052, 3.491, -4.710, 39.195 ], "bp2_params": [ 2.271, -0.376, 0.238, 3.167, 6.158, -0.194 ], "groove_widths": [ 20.055, 16.657, 16.250, 13.240 ], "simple_Rise": 3.161, "simple_Twist": 27.682, "simple_hRise": 2.996, "simple_hTwist": 27.953 }, { "index": 8, "nt1": "///A/886", "nt2": "///A/985", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.271, -0.376, 0.238, 3.167, 6.158, -0.194 ], "step_params": [ 0.134, -2.349, 3.036, 12.540, 11.506, 24.608 ], "heli_params": [ -6.462, 1.811, 1.676, 23.713, -25.842, 29.845 ], "bp2_params": [ 0.220, -0.207, -0.554, 0.284, -1.013, 1.051 ], "groove_widths": [ 18.906, 15.827, 16.694, 13.064 ], "simple_Rise": 3.036, "simple_Twist": 35.846, "simple_hRise": 2.141, "simple_hTwist": 39.561 }, { "index": 9, "nt1": "///A/887", "nt2": "///A/984", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.220, -0.207, -0.554, 0.284, -1.013, 1.051 ], "step_params": [ -0.044, -1.450, 3.228, -2.769, 14.694, 28.548 ], "heli_params": [ -4.949, -0.360, 2.228, 27.540, 5.190, 32.155 ], "bp2_params": [ 0.046, -0.113, -0.105, -5.358, 5.966, 0.855 ], "groove_widths": [ 17.709, 16.132, 16.272, 12.086 ], "simple_Rise": 3.228, "simple_Twist": 29.590, "simple_hRise": 2.269, "simple_hTwist": 33.078 }, { "index": 10, "nt1": "///A/888", "nt2": "///A/983", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.046, -0.113, -0.105, -5.358, 5.966, 0.855 ], "step_params": [ -0.078, -1.433, 3.036, -0.550, 5.831, 33.661 ], "heli_params": [ -3.263, 0.055, 2.757, 9.975, 0.940, 34.152 ], "bp2_params": [ 0.106, -0.169, -0.032, 2.459, 8.019, 0.034 ], "groove_widths": [ 17.663, 16.285, 16.582, 11.949 ], "simple_Rise": 3.036, "simple_Twist": 33.338, "simple_hRise": 2.754, "simple_hTwist": 33.835 }, { "index": 11, "nt1": "///A/889", "nt2": "///A/982", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.106, -0.169, -0.032, 2.459, 8.019, 0.034 ], "step_params": [ 0.629, -1.900, 3.325, 6.922, 8.604, 28.508 ], "heli_params": [ -5.246, 0.123, 2.725, 16.702, -13.436, 30.531 ], "bp2_params": [ -0.167, -0.270, -0.686, -3.194, -0.899, -0.031 ], "groove_widths": [ 19.458, 16.016, 15.938, 13.857 ], "simple_Rise": 3.325, "simple_Twist": 29.965, "simple_hRise": 2.761, "simple_hTwist": 31.892 }, { "index": 12, "nt1": "///A/890", "nt2": "///A/981", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.167, -0.270, -0.686, -3.194, -0.899, -0.031 ], "step_params": [ 0.404, -1.878, 4.362, 16.973, -5.484, 36.901 ], "heli_params": [ -1.842, 2.049, 4.361, -8.109, -25.096, 40.850 ], "bp2_params": [ -0.070, -0.349, -1.278, -13.675, 5.288, -2.824 ], "groove_widths": [ 17.544, 14.429, 18.080, 17.864 ], "simple_Rise": 4.362, "simple_Twist": 36.817, "simple_hRise": 4.360, "simple_hTwist": 40.775 }, { "index": 13, "nt1": "///A/891", "nt2": "///A/980", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.070, -0.349, -1.278, -13.675, 5.288, -2.824 ], "step_params": [ 0.215, -0.536, 2.486, -12.955, -13.481, -175.690 ], "heli_params": [ 0.274, 0.102, 2.484, 6.745, -6.482, -175.747 ], "bp2_params": [ 0.440, -3.338, 0.863, -25.078, -26.151, 87.550 ], "groove_widths": [ 11.346, 10.210, 27.908, 24.378 ], "simple_Rise": 2.486, "simple_Twist": 48.224, "simple_hRise": 2.418, "simple_hTwist": 51.519 }, { "index": 14, "nt1": "///A/894", "nt2": "///A/979", "bp": "A+U", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ 0.440, -3.338, 0.863, -25.078, -26.151, 87.550 ], "step_params": [ -6.313, 0.362, 7.352, -65.401, -1.273, -116.538 ], "heli_params": [ -0.180, -4.638, 4.975, 0.721, -37.046, -127.467 ], "bp2_params": [ -3.173, -0.982, -0.653, -6.564, -10.128, -3.982 ], "groove_widths": [ 10.643, 9.276, 28.337, 23.830 ], "simple_Rise": 7.352, "simple_Twist": 36.310, "simple_hRise": 9.204, "simple_hTwist": 73.824 }, { "index": 15, "nt1": "///A/895", "nt2": "///A/977", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -3.173, -0.982, -0.653, -6.564, -10.128, -3.982 ], "step_params": [ -0.943, -1.055, 3.730, -3.441, -0.074, 45.434 ], "heli_params": [ -1.355, 0.870, 3.790, -0.096, 4.448, 45.557 ], "bp2_params": [ 0.156, -0.129, -1.149, -12.341, -6.301, -2.346 ], "groove_widths": [ 15.082, 13.047, 13.157, 13.042 ], "simple_Rise": 3.730, "simple_Twist": 26.813, "simple_hRise": 3.821, "simple_hTwist": 27.029 }, { "index": 16, "nt1": "///A/896", "nt2": "///A/976", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.156, -0.129, -1.149, -12.341, -6.301, -2.346 ], "step_params": [ -0.491, -1.404, 2.694, -16.509, 10.416, 29.358 ], "heli_params": [ -3.572, -1.162, 2.080, 18.233, 28.897, 35.136 ], "bp2_params": [ -0.216, -0.166, 0.369, 0.572, 4.951, 2.450 ], "groove_widths": [ 18.173, 16.240, 14.566, 11.937 ], "simple_Rise": 2.694, "simple_Twist": 31.525, "simple_hRise": 2.137, "simple_hTwist": 36.948 }, { "index": 17, "nt1": "///A/897", "nt2": "///A/975", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.216, -0.166, 0.369, 0.572, 4.951, 2.450 ], "step_params": [ -0.372, -1.338, 3.160, 0.764, 4.704, 33.803 ], "heli_params": [ -2.979, 0.747, 2.944, 8.041, -1.306, 34.127 ], "bp2_params": [ -0.129, -0.069, 0.229, 5.466, 6.450, -1.902 ], "groove_widths": [ 19.243, 15.413, 17.026, 12.118 ], "simple_Rise": 3.160, "simple_Twist": 33.047, "simple_hRise": 2.938, "simple_hTwist": 33.380 }, { "index": 18, "nt1": "///A/898", "nt2": "///A/974", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.129, -0.069, 0.229, 5.466, 6.450, -1.902 ], "step_params": [ -0.898, -1.098, 2.827, 3.296, 7.779, 31.521 ], "heli_params": [ -3.053, 2.064, 2.391, 14.007, -5.934, 32.606 ], "bp2_params": [ 0.516, -0.209, -0.220, 14.016, -0.900, 5.047 ], "groove_widths": [ 20.907, 14.320, 14.697, 11.915 ], "simple_Rise": 2.827, "simple_Twist": 28.124, "simple_hRise": 2.328, "simple_hTwist": 29.341 }, { "index": 19, "nt1": "///A/899", "nt2": "///A/973", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.516, -0.209, -0.220, 14.016, -0.900, 5.047 ], "step_params": [ -2.054, -0.127, 7.406, -40.842, 32.926, -164.563 ], "heli_params": [ -0.075, -1.207, 7.302, -16.593, -20.582, -166.161 ], "bp2_params": [ -0.397, -3.837, -0.275, 62.225, -0.148, 76.186 ], "groove_widths": [ 21.807, 15.119, 12.475, 10.559 ], "simple_Rise": 7.406, "simple_Twist": 66.517, "simple_hRise": 6.991, "simple_hTwist": 82.803 }, { "index": 20, "nt1": "///A/901", "nt2": "///A/971", "bp": "U+A", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ -0.397, -3.837, -0.275, 62.225, -0.148, 76.186 ], "step_params": [ -3.044, -3.083, 3.627, 35.600, 53.041, -56.914 ], "heli_params": [ -0.019, -0.719, 5.568, -43.681, 29.318, -83.498 ], "bp2_params": [ -1.919, 4.948, 1.684, 8.992, -27.452, -105.872 ], "groove_widths": [ 22.350, null, 11.948, null ], "simple_Rise": 3.627, "simple_Twist": 38.550, "simple_hRise": -1.551, "simple_hTwist": 73.542 }, { "index": 21, "nt1": "///A/902", "nt2": "///A/969", "bp": "G+C", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "bp1_params": [ -1.919, 4.948, 1.684, 8.992, -27.452, -105.872 ], "step_params": [ 0.269, 0.239, 3.665, 37.891, -25.606, 126.321 ], "heli_params": [ 0.350, 0.175, 3.614, -14.164, -20.960, 130.833 ], "bp2_params": [ 0.227, -2.486, 1.776, 0.844, 25.264, 111.003 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.665, "simple_Twist": 35.188, "simple_hRise": 2.387, "simple_hTwist": 57.121 }, { "index": 22, "nt1": "///A/903", "nt2": "///A/968", "bp": "G+C", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ 0.227, -2.486, 1.776, 0.844, 25.264, 111.003 ], "step_params": [ -1.915, 1.823, 2.788, -3.295, 7.563, -91.826 ], "heli_params": [ -1.385, -1.382, 2.612, -5.256, -2.290, -92.113 ], "bp2_params": [ 0.693, 1.150, -1.267, -12.502, -7.227, -16.424 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.788, "simple_Twist": 32.301, "simple_hRise": 3.293, "simple_hTwist": 33.310 }, { "index": 23, "nt1": "///A/904", "nt2": "///A/967", "bp": "A-G", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 33, "num_stems": 2, "strand1": "CAGUCACUCCGAA", "strand2": "GUUAGUGAAGAUA", "bp_type": "||.||||..|...", "helix_form": "A...Axxx...x", "helical_rise": 2.700, "helical_rise_std": 1.028, "helical_radius": 8.773, "helical_radius_std": 3.103, "helical_axis": [ -0.890, 0.409, -0.202 ], "point1": [ 206.747, 141.208, 119.799 ], "point2": [ 177.585, 154.602, 113.171 ], "num_pairs": 13, "pairs": [ { "index": 1, "nt1": "///A/951", "nt2": "///A/920", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.119, -0.286, 0.950, -12.064, 2.525, 2.413 ], "step_params": [ -0.689, -1.394, 2.605, -1.785, 7.175, 33.479 ], "heli_params": [ -3.223, 0.957, 2.299, 12.269, 3.052, 34.263 ], "bp2_params": [ 0.111, -0.461, 1.155, -3.816, 6.549, 4.271 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.605, "simple_Twist": 33.752, "simple_hRise": 2.302, "simple_hTwist": 34.530 }, { "index": 2, "nt1": "///A/952", "nt2": "///A/919", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.111, -0.461, 1.155, -3.816, 6.549, 4.271 ], "step_params": [ 0.490, -0.903, 2.943, -3.512, 8.590, 43.327 ], "heli_params": [ -1.895, -0.936, 2.680, 11.478, 4.692, 44.263 ], "bp2_params": [ -0.554, -1.524, 1.563, -1.024, -2.277, 0.700 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.943, "simple_Twist": 47.602, "simple_hRise": 2.710, "simple_hTwist": 48.446 }, { "index": 3, "nt1": "///A/953", "nt2": "///A/918", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.554, -1.524, 1.563, -1.024, -2.277, 0.700 ], "step_params": [ -2.421, -1.801, 3.149, 9.738, 7.068, 6.126 ], "heli_params": [ -10.560, 14.295, -1.255, 37.073, -51.076, 13.497 ], "bp2_params": [ -0.106, -0.187, 0.499, 1.317, -2.972, 1.591 ], "groove_widths": [ 17.670, null, 16.272, null ], "simple_Rise": 3.149, "simple_Twist": 2.883, "simple_hRise": -2.198, "simple_hTwist": 12.372 }, { "index": 4, "nt1": "///A/954", "nt2": "///A/917", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.106, -0.187, 0.499, 1.317, -2.972, 1.591 ], "step_params": [ -0.544, -0.891, 2.935, 0.507, 5.172, 43.476 ], "heli_params": [ -1.630, 0.772, 2.810, 6.952, -0.681, 43.771 ], "bp2_params": [ 0.084, -0.178, 0.363, 4.258, 1.581, -3.109 ], "groove_widths": [ 15.171, null, 15.815, null ], "simple_Rise": 2.935, "simple_Twist": 42.492, "simple_hRise": 2.807, "simple_hTwist": 42.794 }, { "index": 5, "nt1": "///A/955", "nt2": "///A/916", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.084, -0.178, 0.363, 4.258, 1.581, -3.109 ], "step_params": [ -0.531, -0.976, 2.955, 3.662, 9.667, 23.114 ], "heli_params": [ -4.575, 2.101, 2.261, 22.725, -8.608, 25.291 ], "bp2_params": [ 0.072, -0.179, -0.832, 10.921, -1.487, 1.087 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.955, "simple_Twist": 23.338, "simple_hRise": 2.269, "simple_hTwist": 25.496 }, { "index": 6, "nt1": "///A/956", "nt2": "///A/915", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.072, -0.179, -0.832, 10.921, -1.487, 1.087 ], "step_params": [ 4.767, -1.669, 3.096, -0.306, 5.064, 103.077 ], "heli_params": [ -1.133, -3.046, 3.026, 3.232, 0.195, 103.166 ], "bp2_params": [ -0.026, -0.300, -1.236, 13.625, 6.005, -4.856 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.096, "simple_Twist": 103.183, "simple_hRise": 3.026, "simple_hTwist": 103.272 }, { "index": 7, "nt1": "///A/959", "nt2": "///A/911", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.026, -0.300, -1.236, 13.625, 6.005, -4.856 ], "step_params": [ -1.386, -1.227, 1.999, -2.497, 3.482, -18.044 ], "heli_params": [ 2.639, -5.141, 1.989, -10.903, -7.821, -18.541 ], "bp2_params": [ 4.335, 2.471, -0.079, 28.372, 37.532, 96.917 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 1.999, "simple_Twist": -55.253, "simple_hRise": 2.007, "simple_hTwist": -55.406 }, { "index": 8, "nt1": "///A/960", "nt2": "///A/913", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "bp1_params": [ 4.335, 2.471, -0.079, 28.372, 37.532, 96.917 ], "step_params": [ -0.321, -2.132, 2.747, -2.959, 17.088, 66.825 ], "heli_params": [ -2.376, 0.199, 2.222, 15.254, 2.642, 68.785 ], "bp2_params": [ -3.719, 0.884, -0.371, -21.861, -19.071, 2.121 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.747, "simple_Twist": 121.584, "simple_hRise": 2.566, "simple_hTwist": 122.315 }, { "index": 9, "nt1": "///A/961", "nt2": "///A/910", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -3.719, 0.884, -0.371, -21.861, -19.071, 2.121 ], "step_params": [ 0.311, -1.747, 3.261, -1.125, 4.638, 30.521 ], "heli_params": [ -4.142, -0.793, 2.957, 8.743, 2.120, 30.883 ], "bp2_params": [ 0.184, -0.146, -0.322, -6.040, 2.068, -1.417 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.261, "simple_Twist": 12.406, "simple_hRise": 2.412, "simple_hTwist": 13.289 }, { "index": 10, "nt1": "///A/962", "nt2": "///A/909", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.184, -0.146, -0.322, -6.040, 2.068, -1.417 ], "step_params": [ -0.396, -0.656, 2.916, 0.577, 4.064, 59.056 ], "heli_params": [ -0.847, 0.427, 2.866, 4.118, -0.584, 59.186 ], "bp2_params": [ 6.919, -3.836, -0.025, 0.781, 3.159, -3.985 ], "groove_widths": [ 20.145, null, 12.783, null ], "simple_Rise": 2.916, "simple_Twist": 15.779, "simple_hRise": 2.647, "simple_hTwist": 16.301 }, { "index": 11, "nt1": "///A/963", "nt2": "///A/908", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.919, -3.836, -0.025, 0.781, 3.159, -3.985 ], "step_params": [ -4.034, -0.059, 4.514, 15.684, -3.681, -6.968 ], "heli_params": [ 5.058, 7.502, 5.388, 15.252, 64.994, -17.543 ], "bp2_params": [ -4.654, -3.871, -0.567, -13.178, 6.090, -86.188 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.514, "simple_Twist": 69.975, "simple_hRise": 3.657, "simple_hTwist": 71.574 }, { "index": 12, "nt1": "///A/964", "nt2": "///A/907", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.654, -3.871, -0.567, -13.178, 6.090, -86.188 ], "step_params": [ -1.022, -3.960, 2.411, -27.565, 10.895, 54.459 ], "heli_params": [ -4.242, 0.072, 1.934, 11.041, 27.936, 61.456 ], "bp2_params": [ -1.787, 3.788, -0.790, 40.719, -35.096, -96.499 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.411, "simple_Twist": 31.225, "simple_hRise": 1.437, "simple_hTwist": 42.797 }, { "index": 13, "nt1": "///A/965", "nt2": "///A/2297", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM-W" } ] }, { "index": 34, "num_stems": 5, "strand1": "AAUCCGUAGUCGAAGGAGAGCGUUCUAAGGGC", "strand2": "GUGAGCGUCAGAGGCCUCUCGUAAGAUUCGCG", "bp_type": ".||.|||||||...|||||||.|||||...||", "helix_form": "xA.AA..AAAxxx...AA.x.x.AAA.....", "helical_rise": 2.799, "helical_rise_std": 1.498, "helical_radius": 10.365, "helical_radius_std": 3.626, "helical_axis": [ -0.654, 0.606, 0.454 ], "point1": [ 180.106, 143.458, 139.953 ], "point2": [ 123.643, 195.802, 179.159 ], "num_pairs": 32, "pairs": [ { "index": 1, "nt1": "///A/1006", "nt2": "///A/1002", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -7.062, -2.572, 1.467, -10.126, -12.409, -53.938 ], "step_params": [ 4.020, -2.637, 2.710, -6.308, 24.653, 58.034 ], "heli_params": [ -3.222, -4.030, 1.208, 24.182, 6.188, 62.920 ], "bp2_params": [ 0.015, -0.186, 0.467, -0.445, -0.956, 8.943 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.710, "simple_Twist": 20.809, "simple_hRise": -0.992, "simple_hTwist": 32.763 }, { "index": 2, "nt1": "///A/1008", "nt2": "///A/1001", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.015, -0.186, 0.467, -0.445, -0.956, 8.943 ], "step_params": [ -0.592, -1.349, 3.084, 2.038, 2.050, 37.673 ], "heli_params": [ -2.328, 1.158, 2.974, 3.168, -3.151, 37.780 ], "bp2_params": [ 0.768, -0.633, 0.156, 2.983, 0.570, -11.627 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.084, "simple_Twist": 33.712, "simple_hRise": 2.959, "simple_hTwist": 33.832 }, { "index": 3, "nt1": "///A/1009", "nt2": "///A/1000", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.768, -0.633, 0.156, 2.983, 0.570, -11.627 ], "step_params": [ 0.202, -2.369, 3.498, 3.679, 1.058, 32.900 ], "heli_params": [ -4.346, 0.304, 3.424, 1.860, -6.469, 33.116 ], "bp2_params": [ 1.110, -0.488, -0.335, -8.461, 9.910, -2.900 ], "groove_widths": [ 16.679, null, 19.217, null ], "simple_Rise": 3.498, "simple_Twist": 30.164, "simple_hRise": 3.415, "simple_hTwist": 30.401 }, { "index": 4, "nt1": "///A/1010", "nt2": "///A/999", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.110, -0.488, -0.335, -8.461, 9.910, -2.900 ], "step_params": [ 0.100, -2.017, 2.919, -2.767, 14.006, 24.413 ], "heli_params": [ -6.527, -0.678, 1.536, 30.058, 5.939, 28.226 ], "bp2_params": [ 0.150, -0.196, 0.454, -3.346, 3.264, 0.272 ], "groove_widths": [ 17.109, 15.384, 16.913, 13.286 ], "simple_Rise": 2.919, "simple_Twist": 29.726, "simple_hRise": 1.796, "simple_hTwist": 32.907 }, { "index": 5, "nt1": "///A/1011", "nt2": "///A/998", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.150, -0.196, 0.454, -3.346, 3.264, 0.272 ], "step_params": [ -0.657, -2.179, 2.791, -3.782, 9.671, 36.233 ], "heli_params": [ -4.358, 0.634, 2.213, 15.171, 5.932, 37.644 ], "bp2_params": [ -0.242, -0.185, 0.282, -4.857, 2.999, 1.664 ], "groove_widths": [ 17.307, 15.679, 17.334, 12.473 ], "simple_Rise": 2.791, "simple_Twist": 38.680, "simple_hRise": 2.256, "simple_hTwist": 39.998 }, { "index": 6, "nt1": "///A/1012", "nt2": "///A/997", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.242, -0.185, 0.282, -4.857, 2.999, 1.664 ], "step_params": [ -0.049, -1.520, 3.178, -0.493, 3.233, 41.486 ], "heli_params": [ -2.467, 0.019, 3.057, 4.555, 0.694, 41.609 ], "bp2_params": [ 2.336, -0.437, 0.356, -3.849, 4.205, 3.060 ], "groove_widths": [ 17.244, 15.505, 16.238, 12.997 ], "simple_Rise": 3.178, "simple_Twist": 27.226, "simple_hRise": 2.981, "simple_hTwist": 27.418 }, { "index": 7, "nt1": "///A/1013", "nt2": "///A/996", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.336, -0.437, 0.356, -3.849, 4.205, 3.060 ], "step_params": [ -0.388, -2.210, 2.802, 2.176, 10.481, 24.475 ], "heli_params": [ -6.751, 1.248, 1.688, 23.347, -4.846, 26.681 ], "bp2_params": [ -0.008, -0.181, 0.257, -5.823, 3.604, 2.534 ], "groove_widths": [ 17.390, 15.737, 16.198, 12.648 ], "simple_Rise": 2.802, "simple_Twist": 37.603, "simple_hRise": 2.109, "simple_hTwist": 39.044 }, { "index": 8, "nt1": "///A/1014", "nt2": "///A/995", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.008, -0.181, 0.257, -5.823, 3.604, 2.534 ], "step_params": [ -0.099, -1.780, 3.082, -0.244, 4.590, 29.864 ], "heli_params": [ -4.257, 0.146, 2.784, 8.840, 0.471, 30.207 ], "bp2_params": [ -0.185, -0.156, 0.476, -1.203, 2.436, 1.818 ], "groove_widths": [ 17.575, 16.127, 16.837, 15.121 ], "simple_Rise": 3.082, "simple_Twist": 30.959, "simple_hRise": 2.796, "simple_hTwist": 31.290 }, { "index": 9, "nt1": "///A/1015", "nt2": "///A/994", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.185, -0.156, 0.476, -1.203, 2.436, 1.818 ], "step_params": [ -0.454, -1.234, 3.376, 2.212, 3.035, 31.160 ], "heli_params": [ -2.858, 1.259, 3.206, 5.625, -4.100, 31.380 ], "bp2_params": [ -0.119, -0.079, -0.312, 4.752, 2.569, -0.381 ], "groove_widths": [ 17.570, 16.250, 18.923, 16.999 ], "simple_Rise": 3.376, "simple_Twist": 30.624, "simple_hRise": 3.202, "simple_hTwist": 30.848 }, { "index": 10, "nt1": "///A/1016", "nt2": "///A/993", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.119, -0.079, -0.312, 4.752, 2.569, -0.381 ], "step_params": [ 0.326, -1.191, 3.016, 2.633, 4.134, 35.208 ], "heli_params": [ -2.498, -0.186, 2.878, 6.794, -4.328, 35.537 ], "bp2_params": [ 0.140, -0.170, -0.910, 12.193, -1.448, 0.602 ], "groove_widths": [ 17.327, 14.837, 13.836, 13.497 ], "simple_Rise": 3.016, "simple_Twist": 33.896, "simple_hRise": 2.872, "simple_hTwist": 34.239 }, { "index": 11, "nt1": "///A/1017", "nt2": "///A/992", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.140, -0.170, -0.910, 12.193, -1.448, 0.602 ], "step_params": [ -0.189, -0.060, 4.704, 11.574, 11.918, 62.076 ], "heli_params": [ -0.796, 0.896, 4.533, 11.342, -11.014, 64.045 ], "bp2_params": [ 6.844, -4.091, -0.695, -6.908, -23.726, 2.124 ], "groove_widths": [ 20.428, 16.739, 19.076, 9.642 ], "simple_Rise": 4.704, "simple_Twist": 16.141, "simple_hRise": 3.170, "simple_hTwist": 23.123 }, { "index": 12, "nt1": "///A/1018", "nt2": "///A/868", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.844, -4.091, -0.695, -6.908, -23.726, 2.124 ], "step_params": [ 5.265, -6.544, 3.662, -12.751, -18.248, 96.748 ], "heli_params": [ -3.961, -3.717, 4.007, -12.088, 8.447, 98.649 ], "bp2_params": [ 0.561, 7.629, 2.040, -29.777, -6.258, 150.529 ], "groove_widths": [ 22.885, 19.678, 16.066, 8.190 ], "simple_Rise": 3.662, "simple_Twist": 149.773, "simple_hRise": 3.780, "simple_hTwist": 150.355 }, { "index": 13, "nt1": "///A/1019", "nt2": "///A/1228", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "bp1_params": [ 0.561, 7.629, 2.040, -29.777, -6.258, 150.529 ], "step_params": [ 0.807, 2.108, 6.381, 8.607, 26.224, -71.985 ], "heli_params": [ -3.147, 1.126, 5.359, -21.552, 7.073, -76.422 ], "bp2_params": [ -6.928, -3.679, -0.056, -7.366, 4.150, -8.169 ], "groove_widths": [ 21.056, 16.953, 19.841, 19.486 ], "simple_Rise": 6.381, "simple_Twist": -35.166, "simple_hRise": 3.742, "simple_hTwist": -44.433 }, { "index": 14, "nt1": "///A/1230", "nt2": "///A/865", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.928, -3.679, -0.056, -7.366, 4.150, -8.169 ], "step_params": [ 0.345, -1.565, 3.564, 1.205, 2.891, 58.213 ], "heli_params": [ -1.771, -0.285, 3.495, 2.969, -1.238, 58.290 ], "bp2_params": [ 0.697, 0.585, -0.876, -8.118, 14.905, -0.095 ], "groove_widths": [ 19.612, 16.876, 21.106, 20.278 ], "simple_Rise": 3.564, "simple_Twist": 11.604, "simple_hRise": 3.101, "simple_hTwist": 12.018 }, { "index": 15, "nt1": "///A/1231", "nt2": "///A/864", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.697, 0.585, -0.876, -8.118, 14.905, -0.095 ], "step_params": [ -0.781, -1.944, 3.173, -4.653, 6.102, 25.632 ], "heli_params": [ -5.668, 0.572, 2.742, 13.376, 10.200, 26.738 ], "bp2_params": [ -0.094, -0.129, -0.461, -3.258, 14.491, 0.164 ], "groove_widths": [ 18.557, 17.966, 15.241, 15.148 ], "simple_Rise": 3.173, "simple_Twist": 29.786, "simple_hRise": 2.816, "simple_hTwist": 30.737 }, { "index": 16, "nt1": "///A/1232", "nt2": "///A/863", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.094, -0.129, -0.461, -3.258, 14.491, 0.164 ], "step_params": [ -0.339, -1.977, 3.835, 3.346, 11.539, 35.202 ], "heli_params": [ -4.765, 1.013, 3.017, 18.428, -5.344, 37.134 ], "bp2_params": [ 0.297, 0.020, -1.189, -16.952, 8.053, -7.637 ], "groove_widths": [ 17.559, 16.198, 17.110, 15.354 ], "simple_Rise": 3.835, "simple_Twist": 33.022, "simple_hRise": 2.953, "simple_hTwist": 35.082 }, { "index": 17, "nt1": "///A/1233", "nt2": "///A/862", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.297, 0.020, -1.189, -16.952, 8.053, -7.637 ], "step_params": [ 0.368, -2.129, 3.100, -7.622, 1.109, 28.061 ], "heli_params": [ -4.465, -2.273, 2.820, 2.233, 15.356, 29.078 ], "bp2_params": [ -0.208, -0.173, 0.228, -8.847, 6.194, 0.714 ], "groove_widths": [ 16.883, 15.470, 17.484, 17.357 ], "simple_Rise": 3.100, "simple_Twist": 30.878, "simple_hRise": 2.854, "simple_hTwist": 31.801 }, { "index": 18, "nt1": "///A/1234", "nt2": "///A/861", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.208, -0.173, 0.228, -8.847, 6.194, 0.714 ], "step_params": [ -0.140, -1.842, 3.468, 2.085, -6.713, 32.151 ], "heli_params": [ -1.972, 0.644, 3.750, -11.944, -3.709, 32.891 ], "bp2_params": [ 0.048, -0.067, 0.075, -2.372, -1.087, -0.612 ], "groove_widths": [ 16.460, 15.225, 21.741, 21.633 ], "simple_Rise": 3.468, "simple_Twist": 30.484, "simple_hRise": 3.760, "simple_hTwist": 31.265 }, { "index": 19, "nt1": "///A/1235", "nt2": "///A/860", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.048, -0.067, 0.075, -2.372, -1.087, -0.612 ], "step_params": [ 1.183, -2.603, 3.243, -2.159, -2.818, 23.177 ], "heli_params": [ -5.432, -3.659, 3.408, -6.961, 5.332, 23.444 ], "bp2_params": [ -0.167, -0.209, 0.820, -0.062, -1.293, 2.059 ], "groove_widths": [ 16.113, 14.908, 22.333, 22.139 ], "simple_Rise": 3.243, "simple_Twist": 24.521, "simple_hRise": 3.401, "simple_hTwist": 24.773 }, { "index": 20, "nt1": "///A/1236", "nt2": "///A/859", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.167, -0.209, 0.820, -0.062, -1.293, 2.059 ], "step_params": [ -1.343, -2.857, 3.467, 2.386, 12.196, 30.946 ], "heli_params": [ -6.790, 2.698, 2.114, 21.788, -4.262, 33.291 ], "bp2_params": [ 0.671, 0.171, 0.226, -12.259, -24.616, 3.788 ], "groove_widths": [ 16.342, 15.091, 24.059, 23.440 ], "simple_Rise": 3.467, "simple_Twist": 25.676, "simple_hRise": 1.818, "simple_hTwist": 28.480 }, { "index": 21, "nt1": "///A/1237", "nt2": "///A/1290", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.671, 0.171, 0.226, -12.259, -24.616, 3.788 ], "step_params": [ 2.982, -1.492, 3.451, -11.634, -4.450, 13.850 ], "heli_params": [ -2.708, -14.211, 1.074, -15.059, 39.366, 18.607 ], "bp2_params": [ -3.007, 1.265, 0.174, 6.573, -5.699, 46.576 ], "groove_widths": [ 17.308, 14.670, 20.766, 20.449 ], "simple_Rise": 3.451, "simple_Twist": 36.338, "simple_hRise": 2.570, "simple_hTwist": 38.345 }, { "index": 22, "nt1": "///A/1238", "nt2": "///A/1289", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -3.007, 1.265, 0.174, 6.573, -5.699, 46.576 ], "step_params": [ -1.070, -1.448, 3.419, -4.874, -4.491, 53.672 ], "heli_params": [ -1.295, 0.854, 3.598, -4.952, 5.374, 54.050 ], "bp2_params": [ -0.089, -0.030, 0.160, 3.569, -2.115, 0.155 ], "groove_widths": [ 16.887, 13.506, 17.833, 14.735 ], "simple_Rise": 3.419, "simple_Twist": 35.770, "simple_hRise": 3.678, "simple_hTwist": 36.359 }, { "index": 23, "nt1": "///A/1239", "nt2": "///A/1287", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.089, -0.030, 0.160, 3.569, -2.115, 0.155 ], "step_params": [ -0.218, -1.690, 3.353, -3.337, 9.030, 31.250 ], "heli_params": [ -4.507, -0.168, 2.777, 16.286, 6.018, 32.664 ], "bp2_params": [ -0.079, -0.233, 0.914, 5.278, 5.959, 2.733 ], "groove_widths": [ 17.149, 14.068, 16.571, 12.512 ], "simple_Rise": 3.353, "simple_Twist": 31.204, "simple_hRise": 2.776, "simple_hTwist": 32.620 }, { "index": 24, "nt1": "///A/1240", "nt2": "///A/1286", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.079, -0.233, 0.914, 5.278, 5.959, 2.733 ], "step_params": [ 0.351, -1.922, 3.002, 2.358, 12.807, 36.172 ], "heli_params": [ -4.247, -0.291, 2.237, 19.852, -3.655, 38.371 ], "bp2_params": [ 0.183, -0.245, 0.835, 2.629, -1.829, 2.665 ], "groove_widths": [ 17.621, 15.276, 16.379, 12.435 ], "simple_Rise": 3.002, "simple_Twist": 34.724, "simple_hRise": 2.200, "simple_hTwist": 37.015 }, { "index": 25, "nt1": "///A/1241", "nt2": "///A/1285", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.183, -0.245, 0.835, 2.629, -1.829, 2.665 ], "step_params": [ -0.444, -2.074, 3.104, 2.742, 0.465, 31.592 ], "heli_params": [ -3.876, 1.286, 3.025, 0.852, -5.025, 31.711 ], "bp2_params": [ -0.036, -0.136, 0.431, 0.534, -4.398, -1.497 ], "groove_widths": [ 16.982, 15.472, 17.184, 13.198 ], "simple_Rise": 3.104, "simple_Twist": 33.082, "simple_hRise": 3.029, "simple_hTwist": 33.196 }, { "index": 26, "nt1": "///A/1242", "nt2": "///A/1284", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.036, -0.136, 0.431, 0.534, -4.398, -1.497 ], "step_params": [ -0.240, -1.839, 2.736, -4.176, 11.496, 30.923 ], "heli_params": [ -4.656, -0.102, 1.961, 20.580, 7.475, 33.199 ], "bp2_params": [ 0.048, -0.162, 0.519, 5.328, 13.211, 3.005 ], "groove_widths": [ 17.764, 16.338, 16.086, 10.630 ], "simple_Rise": 2.736, "simple_Twist": 30.246, "simple_hRise": 1.942, "simple_hTwist": 32.572 }, { "index": 27, "nt1": "///A/1243", "nt2": "///A/1283", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.048, -0.162, 0.519, 5.328, 13.211, 3.005 ], "step_params": [ 0.381, -0.530, 3.064, 4.955, 0.739, 167.641 ], "heli_params": [ -0.268, -0.185, 3.065, 0.372, -2.492, 167.653 ], "bp2_params": [ 0.531, -3.750, -0.360, 3.092, -19.691, 95.100 ], "groove_widths": [ 17.965, 16.689, 14.081, 6.985 ], "simple_Rise": 3.064, "simple_Twist": 32.949, "simple_hRise": 3.074, "simple_hTwist": 33.317 }, { "index": 28, "nt1": "///A/1244", "nt2": "///A/1282", "bp": "A+U", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ 0.531, -3.750, -0.360, 3.092, -19.691, 95.100 ], "step_params": [ -1.552, -1.677, 2.820, 35.926, -0.025, -107.843 ], "heli_params": [ 1.012, -0.541, 3.091, 0.015, 21.858, -111.862 ], "bp2_params": [ 1.467, 4.399, 1.640, -0.159, 3.782, -163.462 ], "groove_widths": [ 17.027, 15.593, 14.715, 11.632 ], "simple_Rise": 2.820, "simple_Twist": 34.522, "simple_hRise": 0.909, "simple_hTwist": 49.426 }, { "index": 29, "nt1": "///A/1245", "nt2": "///A/1281", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cHH", "DSSR": "cM-M", "bp1_params": [ 1.467, 4.399, 1.640, -0.159, 3.782, -163.462 ], "step_params": [ 1.014, 1.100, 3.479, -5.101, 6.058, 169.496 ], "heli_params": [ 0.544, -0.516, 3.480, 3.042, 2.561, 169.521 ], "bp2_params": [ -0.698, -3.739, 0.552, -2.119, -4.715, 91.099 ], "groove_widths": [ 15.863, null, 17.888, null ], "simple_Rise": 3.479, "simple_Twist": 31.886, "simple_hRise": 3.426, "simple_hTwist": 32.830 }, { "index": 30, "nt1": "///A/1246", "nt2": "///A/1280", "bp": "G+G", "name": "--", "Saenger": "06-VI", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ -0.698, -3.739, 0.552, -2.119, -4.715, 91.099 ], "step_params": [ -3.187, 0.078, 3.684, -6.635, -1.475, -109.016 ], "heli_params": [ -0.027, -2.047, 3.550, 0.905, -4.072, -109.159 ], "bp2_params": [ -0.182, -0.187, -0.360, 6.361, 15.807, -2.237 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.684, "simple_Twist": 22.109, "simple_hRise": 4.424, "simple_hTwist": 23.118 }, { "index": 31, "nt1": "///A/1247", "nt2": "///A/1279", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.182, -0.187, -0.360, 6.361, 15.807, -2.237 ], "step_params": [ -0.399, -2.153, 3.277, -1.971, 1.535, 29.353 ], "heli_params": [ -4.559, 0.368, 3.182, 3.022, 3.880, 29.456 ], "bp2_params": [ 0.062, -0.167, -0.664, 11.652, 13.809, -2.574 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.277, "simple_Twist": 27.528, "simple_hRise": 3.175, "simple_hTwist": 27.639 }, { "index": 32, "nt1": "///A/1248", "nt2": "///A/1278", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 35, "num_stems": 1, "strand1": "AAGGG", "strand2": "AACCC", "bp_type": "..|||", "helix_form": "x.AA", "helical_rise": 3.019, "helical_rise_std": 0.582, "helical_radius": 8.765, "helical_radius_std": 2.733, "helical_axis": [ 0.506, -0.556, 0.660 ], "point1": [ 152.744, 150.885, 153.201 ], "point2": [ 158.761, 144.272, 161.055 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/1020", "nt2": "///A/1036", "bp": "A-A", "name": "~Sheared", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.197, -3.952, -0.592, 38.218, 45.140, -9.008 ], "step_params": [ 2.286, -2.736, 6.079, -25.542, -24.498, 2.537 ], "heli_params": [ 2.655, -11.200, 0.685, -59.552, 62.088, 35.479 ], "bp2_params": [ -7.303, -1.913, -0.085, 8.916, 18.744, -9.863 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 6.079, "simple_Twist": 87.480, "simple_hRise": 5.868, "simple_hTwist": 93.008 }, { "index": 2, "nt1": "///A/1021", "nt2": "///A/1034", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "tH.", "DSSR": "tM-.", "bp1_params": [ -7.303, -1.913, -0.085, 8.916, 18.744, -9.863 ], "step_params": [ 0.236, -1.808, 3.628, -5.772, 8.580, 62.167 ], "heli_params": [ -2.144, -0.503, 3.347, 8.248, 5.549, 62.936 ], "bp2_params": [ -0.233, -0.110, -0.292, -4.650, 0.545, -0.070 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.628, "simple_Twist": 24.863, "simple_hRise": 2.740, "simple_hTwist": 26.897 }, { "index": 3, "nt1": "///A/1022", "nt2": "///A/1033", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.233, -0.110, -0.292, -4.650, 0.545, -0.070 ], "step_params": [ -0.513, -2.147, 3.111, -0.948, 5.719, 32.982 ], "heli_params": [ -4.575, 0.751, 2.724, 9.977, 1.654, 33.473 ], "bp2_params": [ -0.150, -0.190, -0.382, -0.949, 5.016, -0.150 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.111, "simple_Twist": 33.037, "simple_hRise": 2.725, "simple_hTwist": 33.528 }, { "index": 4, "nt1": "///A/1023", "nt2": "///A/1032", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.150, -0.190, -0.382, -0.949, 5.016, -0.150 ], "step_params": [ 0.690, -2.143, 3.213, -4.058, 10.635, 35.885 ], "heli_params": [ -4.547, -1.536, 2.414, 16.750, 6.390, 37.590 ], "bp2_params": [ -0.150, -0.132, 0.063, -8.027, 17.689, 1.261 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.213, "simple_Twist": 36.167, "simple_hRise": 2.421, "simple_hTwist": 37.859 }, { "index": 5, "nt1": "///A/1024", "nt2": "///A/1031", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 36, "num_stems": 1, "strand1": "GGCCC", "strand2": "CGGGG", "bp_type": "|.|||", "helix_form": ".xAA", "helical_rise": 3.356, "helical_rise_std": 0.336, "helical_radius": 9.614, "helical_radius_std": 2.377, "helical_axis": [ -0.558, 0.829, 0.042 ], "point1": [ 167.772, 116.809, 166.157 ], "point2": [ 160.326, 127.866, 166.721 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/1070", "nt2": "///A/1186", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.145, -0.106, 0.024, 9.885, -10.763, 0.211 ], "step_params": [ 1.421, -0.121, 3.444, 3.872, -0.921, -62.994 ], "heli_params": [ 0.158, 1.537, 3.359, 0.881, 3.702, -63.107 ], "bp2_params": [ 1.372, 1.775, 0.608, -23.775, 7.389, -174.806 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.444, "simple_Twist": -2.503, "simple_hRise": 0.640, "simple_hTwist": -4.702 }, { "index": 2, "nt1": "///A/1071", "nt2": "///A/1185", "bp": "G+G", "name": "--", "Saenger": "03-III", "LW": "tWW", "DSSR": "tW+W", "bp1_params": [ 1.372, 1.775, 0.608, -23.775, 7.389, -174.806 ], "step_params": [ -4.911, -5.772, 3.465, -15.410, -4.746, 155.602 ], "heli_params": [ -2.935, 2.458, 3.657, -2.427, 7.881, 155.847 ], "bp2_params": [ -1.003, 0.173, -0.104, -4.636, -11.579, -3.409 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.465, "simple_Twist": 98.917, "simple_hRise": 4.202, "simple_hTwist": 99.882 }, { "index": 3, "nt1": "///A/1051", "nt2": "///A/1184", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.003, 0.173, -0.104, -4.636, -11.579, -3.409 ], "step_params": [ -0.632, -1.484, 3.584, -1.772, 1.905, 38.334 ], "heli_params": [ -2.513, 0.721, 3.533, 2.897, 2.695, 38.418 ], "bp2_params": [ 0.178, -0.238, -0.618, -4.165, -0.718, 0.759 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.584, "simple_Twist": 32.505, "simple_hRise": 3.522, "simple_hTwist": 32.607 }, { "index": 4, "nt1": "///A/1052", "nt2": "///A/1183", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.178, -0.238, -0.618, -4.165, -0.718, 0.759 ], "step_params": [ 0.286, -1.516, 3.063, -3.173, -1.560, 29.140 ], "heli_params": [ -2.676, -1.209, 3.090, -3.086, 6.277, 29.349 ], "bp2_params": [ 0.127, -0.087, -0.439, 13.086, 4.980, -1.167 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.063, "simple_Twist": 29.206, "simple_hRise": 3.090, "simple_hTwist": 29.415 }, { "index": 5, "nt1": "///A/1053", "nt2": "///A/1182", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 37, "num_stems": 3, "strand1": "AGGAGUGGGUUGC", "strand2": "GCCGCGUCACAUG", "bp_type": ".||.|.||...||", "helix_form": ".A.x...xx.x.", "helical_rise": 3.120, "helical_rise_std": 1.227, "helical_radius": 9.277, "helical_radius_std": 2.348, "helical_axis": [ -0.003, -0.701, -0.713 ], "point1": [ 185.917, 122.686, 156.921 ], "point2": [ 185.808, 96.453, 130.264 ], "num_pairs": 13, "pairs": [ { "index": 1, "nt1": "///A/1075", "nt2": "///A/1171", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.556, -4.276, 0.636, 0.291, 3.585, -3.682 ], "step_params": [ 1.050, -0.920, 3.025, 2.815, 1.815, 57.821 ], "heli_params": [ -1.040, -0.946, 3.041, 1.876, -2.909, 57.910 ], "bp2_params": [ -0.212, -0.205, 0.270, 3.704, 4.198, 1.778 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.025, "simple_Twist": 14.421, "simple_hRise": 3.033, "simple_hTwist": 14.803 }, { "index": 2, "nt1": "///A/1076", "nt2": "///A/1170", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.212, -0.205, 0.270, 3.704, 4.198, 1.778 ], "step_params": [ 0.326, -2.022, 3.465, 8.603, 12.536, 36.136 ], "heli_params": [ -4.491, 0.522, 2.654, 19.198, -13.175, 39.105 ], "bp2_params": [ -0.225, -0.219, -0.857, -12.034, -9.330, 4.076 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.465, "simple_Twist": 36.213, "simple_hRise": 2.656, "simple_hTwist": 39.176 }, { "index": 3, "nt1": "///A/1077", "nt2": "///A/1169", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.225, -0.219, -0.857, -12.034, -9.330, 4.076 ], "step_params": [ -0.210, -2.040, 3.456, -2.274, 0.361, 43.632 ], "heli_params": [ -2.778, 0.053, 3.446, 0.486, 3.057, 43.690 ], "bp2_params": [ 2.238, 1.377, -0.019, -25.792, 1.965, -4.297 ], "groove_widths": [ 15.502, null, 18.924, null ], "simple_Rise": 3.456, "simple_Twist": 32.250, "simple_hRise": 3.440, "simple_hTwist": 32.330 }, { "index": 4, "nt1": "///A/1078", "nt2": "///A/1168", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.238, 1.377, -0.019, -25.792, 1.965, -4.297 ], "step_params": [ -2.310, -4.079, 3.646, 25.124, 2.894, 28.112 ], "heli_params": [ -6.626, 6.225, 0.927, 4.889, -42.450, 37.642 ], "bp2_params": [ -0.031, -0.560, -1.539, -13.177, 2.732, -6.918 ], "groove_widths": [ 16.584, 13.866, 18.548, 17.304 ], "simple_Rise": 3.646, "simple_Twist": 38.470, "simple_hRise": 1.621, "simple_hTwist": 45.774 }, { "index": 5, "nt1": "///A/1080", "nt2": "///A/1167", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.031, -0.560, -1.539, -13.177, 2.732, -6.918 ], "step_params": [ 0.301, -0.115, 3.220, -4.548, 5.757, 29.086 ], "heli_params": [ -1.380, -1.497, 3.060, 11.238, 8.879, 29.978 ], "bp2_params": [ 0.709, -0.798, -0.532, 2.736, 0.712, -0.543 ], "groove_widths": [ 17.863, 16.180, 18.041, 17.895 ], "simple_Rise": 3.220, "simple_Twist": 25.089, "simple_hRise": 3.018, "simple_hTwist": 26.123 }, { "index": 6, "nt1": "///A/1081", "nt2": "///A/1166", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.709, -0.798, -0.532, 2.736, 0.712, -0.543 ], "step_params": [ 0.795, -2.447, 4.109, 1.388, 22.167, 23.008 ], "heli_params": [ -8.399, -1.201, 1.340, 44.457, -2.783, 31.875 ], "bp2_params": [ -3.212, -1.179, -1.678, -20.542, -5.214, -18.544 ], "groove_widths": [ 19.067, 14.711, 15.900, 15.486 ], "simple_Rise": 4.109, "simple_Twist": 44.008, "simple_hRise": 2.680, "simple_hTwist": 49.046 }, { "index": 7, "nt1": "///A/1082", "nt2": "///A/1165", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -3.212, -1.179, -1.678, -20.542, -5.214, -18.544 ], "step_params": [ -0.065, -1.002, 3.167, -6.050, 5.160, 33.365 ], "heli_params": [ -2.470, -0.791, 2.950, 8.831, 10.355, 34.274 ], "bp2_params": [ -0.089, -0.431, -1.488, -10.962, 0.952, 0.083 ], "groove_widths": [ 20.104, 13.586, 17.207, 17.205 ], "simple_Rise": 3.167, "simple_Twist": 16.938, "simple_hRise": 2.617, "simple_hTwist": 18.699 }, { "index": 8, "nt1": "///A/1083", "nt2": "///A/1164", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.089, -0.431, -1.488, -10.962, 0.952, 0.083 ], "step_params": [ 1.767, -1.062, 2.898, 21.282, 27.276, 59.762 ], "heli_params": [ -1.902, -0.830, 2.688, 25.237, -19.691, 68.244 ], "bp2_params": [ -6.685, -0.343, -0.114, 61.918, 2.201, -27.788 ], "groove_widths": [ 20.648, 15.082, 17.474, 12.964 ], "simple_Rise": 2.898, "simple_Twist": 140.480, "simple_hRise": 2.908, "simple_hTwist": 142.336 }, { "index": 9, "nt1": "///A/1085", "nt2": "///A/1084", "bp": "G+A", "name": "Platform", "Saenger": "--", "LW": "cHS", "DSSR": "cM+m", "bp1_params": [ -6.685, -0.343, -0.114, 61.918, 2.201, -27.788 ], "step_params": [ -0.890, 1.363, 5.849, 34.061, 6.964, 6.323 ], "heli_params": [ 0.509, 9.963, 0.475, 16.028, -78.386, 35.319 ], "bp2_params": [ 1.240, -2.821, -1.872, 0.557, -1.537, 20.837 ], "groove_widths": [ 21.330, 13.082, 18.562, 17.981 ], "simple_Rise": 5.849, "simple_Twist": -85.703, "simple_hRise": 5.751, "simple_hTwist": -91.204 }, { "index": 10, "nt1": "///A/1086", "nt2": "///A/1162", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.240, -2.821, -1.872, 0.557, -1.537, 20.837 ], "step_params": [ 3.775, 2.587, 3.481, -21.106, 19.098, 31.285 ], "heli_params": [ 1.705, -7.360, 1.914, 29.017, 32.069, 42.055 ], "bp2_params": [ 4.577, 1.204, 0.170, -23.868, 19.150, 82.721 ], "groove_widths": [ 23.724, null, 19.392, null ], "simple_Rise": 3.481, "simple_Twist": 3.885, "simple_hRise": -0.578, "simple_hTwist": 28.722 }, { "index": 11, "nt1": "///A/1087", "nt2": "///A/1161", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W", "bp1_params": [ 4.577, 1.204, 0.170, -23.868, 19.150, 82.721 ], "step_params": [ -2.046, -1.717, 5.401, -2.676, 53.263, 29.345 ], "heli_params": [ -5.548, 1.842, 1.329, 63.154, 3.173, 60.348 ], "bp2_params": [ -0.859, -1.195, -1.819, -24.299, -13.864, -5.179 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 5.401, "simple_Twist": 71.463, "simple_hRise": 3.729, "simple_hTwist": 86.991 }, { "index": 12, "nt1": "///A/1088", "nt2": "///A/1159", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.859, -1.195, -1.819, -24.299, -13.864, -5.179 ], "step_params": [ -0.429, -0.975, 3.340, -9.539, 1.221, 29.021 ], "heli_params": [ -2.102, -1.152, 3.271, 2.357, 18.408, 30.540 ], "bp2_params": [ 0.137, -0.639, -1.515, -13.209, 0.538, 1.106 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.340, "simple_Twist": 23.920, "simple_hRise": 3.217, "simple_hTwist": 25.755 }, { "index": 13, "nt1": "///A/1089", "nt2": "///A/1158", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 38, "num_stems": 5, "strand1": "AACGUAUCACCGAGCUGCGGACUGUUC", "strand2": "UUGCAUAGUGGAUCGACGCCUGACAAG", "bp_type": ".||||||||||..||||||||||||||", "helix_form": "xAA...xxA..xxAAxAAAx.AAAA.", "helical_rise": 2.707, "helical_rise_std": 0.952, "helical_radius": 11.026, "helical_radius_std": 4.905, "helical_axis": [ -0.560, 0.754, -0.344 ], "point1": [ 163.995, 111.255, 162.444 ], "point2": [ 124.673, 164.219, 138.242 ], "num_pairs": 27, "pairs": [ { "index": 1, "nt1": "///A/1188", "nt2": "///A/1065", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -2.641, -0.343, -1.573, 13.210, -23.337, -74.569 ], "step_params": [ 1.723, -1.241, 4.152, -11.012, 2.191, 57.773 ], "heli_params": [ -1.403, -2.451, 3.751, 2.244, 11.280, 58.761 ], "bp2_params": [ 0.103, -0.238, -1.215, -9.959, -6.716, -0.474 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.152, "simple_Twist": 42.949, "simple_hRise": 3.563, "simple_hTwist": 44.325 }, { "index": 2, "nt1": "///A/1190", "nt2": "///A/1064", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.103, -0.238, -1.215, -9.959, -6.716, -0.474 ], "step_params": [ 0.040, -1.488, 2.927, -3.199, 2.496, 33.953 ], "heli_params": [ -2.878, -0.511, 2.798, 4.255, 5.454, 34.187 ], "bp2_params": [ 0.106, -0.255, -0.776, -2.648, -1.563, 1.600 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.927, "simple_Twist": 33.776, "simple_hRise": 2.798, "simple_hTwist": 34.012 }, { "index": 3, "nt1": "///A/1191", "nt2": "///A/1063", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.106, -0.255, -0.776, -2.648, -1.563, 1.600 ], "step_params": [ -0.080, -1.334, 3.677, 6.097, 11.866, 26.013 ], "heli_params": [ -5.334, 1.539, 2.735, 24.423, -12.548, 29.182 ], "bp2_params": [ -0.200, -0.387, -1.176, 0.385, -1.844, 4.288 ], "groove_widths": [ 17.773, null, 17.184, null ], "simple_Rise": 3.677, "simple_Twist": 28.166, "simple_hRise": 2.823, "simple_hTwist": 31.108 }, { "index": 4, "nt1": "///A/1192", "nt2": "///A/1062", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.200, -0.387, -1.176, 0.385, -1.844, 4.288 ], "step_params": [ 0.482, -1.333, 2.966, 5.718, 6.226, 25.262 ], "heli_params": [ -4.326, 0.267, 2.613, 13.753, -12.630, 26.617 ], "bp2_params": [ -0.238, -0.432, -1.599, 13.208, -2.205, -3.348 ], "groove_widths": [ 18.400, 16.354, 17.645, 8.279 ], "simple_Rise": 2.966, "simple_Twist": 25.622, "simple_hRise": 2.619, "simple_hTwist": 26.958 }, { "index": 5, "nt1": "///A/1193", "nt2": "///A/1061", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.238, -0.432, -1.599, 13.208, -2.205, -3.348 ], "step_params": [ 1.245, -1.893, 3.657, -15.505, 31.624, 27.558 ], "heli_params": [ -4.886, -2.814, 0.556, 47.693, 23.383, 44.450 ], "bp2_params": [ 0.011, -0.419, 1.173, -3.836, 0.986, -1.482 ], "groove_widths": [ 18.727, 16.392, 19.599, 18.893 ], "simple_Rise": 3.657, "simple_Twist": 25.669, "simple_hRise": 0.404, "simple_hTwist": 43.341 }, { "index": 6, "nt1": "///A/1194", "nt2": "///A/1060", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.011, -0.419, 1.173, -3.836, 0.986, -1.482 ], "step_params": [ 0.154, -2.380, 3.169, 1.532, 2.747, 37.421 ], "heli_params": [ -4.035, -0.050, 2.997, 4.272, -2.383, 37.548 ], "bp2_params": [ -0.072, -0.288, 1.250, -4.304, 2.802, -0.499 ], "groove_widths": [ 18.133, 15.909, 24.994, 23.615 ], "simple_Rise": 3.169, "simple_Twist": 38.477, "simple_hRise": 3.002, "simple_hTwist": 38.601 }, { "index": 7, "nt1": "///A/1195", "nt2": "///A/1059", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.072, -0.288, 1.250, -4.304, 2.802, -0.499 ], "step_params": [ -0.296, -1.415, 3.008, 15.077, 0.962, 23.324 ], "heli_params": [ -3.160, 3.856, 2.330, 2.119, -33.198, 27.733 ], "bp2_params": [ 0.236, -0.164, -0.350, 1.274, -2.700, 2.533 ], "groove_widths": [ 17.395, 16.035, 19.929, 15.944 ], "simple_Rise": 3.008, "simple_Twist": 21.516, "simple_hRise": 2.254, "simple_hTwist": 26.239 }, { "index": 8, "nt1": "///A/1196", "nt2": "///A/1057", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.236, -0.164, -0.350, 1.274, -2.700, 2.533 ], "step_params": [ -0.101, -2.687, 2.992, -7.497, 16.776, 30.943 ], "heli_params": [ -6.101, -0.613, 1.386, 28.512, 12.741, 35.873 ], "bp2_params": [ 0.069, -0.102, 0.440, 1.551, -0.949, -3.623 ], "groove_widths": [ 18.371, 15.842, 18.880, 18.126 ], "simple_Rise": 2.992, "simple_Twist": 31.604, "simple_hRise": 1.421, "simple_hTwist": 36.440 }, { "index": 9, "nt1": "///A/1197", "nt2": "///A/1050", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.069, -0.102, 0.440, 1.551, -0.949, -3.623 ], "step_params": [ 0.729, -1.528, 3.350, 0.218, 1.340, 37.676 ], "heli_params": [ -2.542, -1.099, 3.300, 2.074, -0.338, 37.699 ], "bp2_params": [ 0.205, -0.130, -0.007, 1.785, -1.681, 1.993 ], "groove_widths": [ 15.625, 10.929, 18.164, 16.976 ], "simple_Rise": 3.350, "simple_Twist": 37.056, "simple_hRise": 3.299, "simple_hTwist": 37.080 }, { "index": 10, "nt1": "///A/1198", "nt2": "///A/1049", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.205, -0.130, -0.007, 1.785, -1.681, 1.993 ], "step_params": [ -1.261, -2.229, 3.149, -2.418, 1.749, 27.790 ], "heli_params": [ -5.013, 2.061, 3.102, 3.627, 5.017, 27.947 ], "bp2_params": [ 0.168, -0.141, -0.082, 2.456, -3.521, -0.888 ], "groove_widths": [ 14.079, 11.106, 16.327, 15.029 ], "simple_Rise": 3.149, "simple_Twist": 27.946, "simple_hRise": 3.102, "simple_hTwist": 28.102 }, { "index": 11, "nt1": "///A/1199", "nt2": "///A/1048", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.168, -0.141, -0.082, 2.456, -3.521, -0.888 ], "step_params": [ -0.847, -0.344, 3.901, 4.356, 2.716, 58.304 ], "heli_params": [ -0.519, 1.135, 3.816, 2.782, -4.462, 58.510 ], "bp2_params": [ 6.636, -3.608, -1.075, 0.667, -5.397, -5.436 ], "groove_widths": [ 19.977, 17.504, 6.771, 6.702 ], "simple_Rise": 3.901, "simple_Twist": 17.562, "simple_hRise": 3.496, "simple_hTwist": 18.292 }, { "index": 12, "nt1": "///A/1200", "nt2": "///A/1047", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.636, -3.608, -1.075, 0.667, -5.397, -5.436 ], "step_params": [ -0.965, 0.088, 6.340, -2.001, 20.477, 25.147 ], "heli_params": [ -6.984, 1.033, 5.062, 39.631, 3.872, 32.386 ], "bp2_params": [ -4.067, -1.797, 0.134, -4.874, -4.792, -88.805 ], "groove_widths": [ 22.386, 18.424, 6.297, 6.181 ], "simple_Rise": 6.340, "simple_Twist": 91.130, "simple_hRise": 6.276, "simple_hTwist": 92.922 }, { "index": 13, "nt1": "///A/1201", "nt2": "///A/1045", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.067, -1.797, 0.134, -4.874, -4.792, -88.805 ], "step_params": [ 2.754, -2.765, 3.164, -1.422, 10.450, 67.346 ], "heli_params": [ -2.827, -2.509, 2.709, 9.365, 1.274, 68.070 ], "bp2_params": [ -0.209, -0.187, -0.131, 0.597, 10.976, -4.001 ], "groove_widths": [ 20.452, 16.087, 9.148, 9.024 ], "simple_Rise": 3.164, "simple_Twist": 43.665, "simple_hRise": 2.388, "simple_hTwist": 44.860 }, { "index": 14, "nt1": "///A/1203", "nt2": "///A/1044", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.209, -0.187, -0.131, 0.597, 10.976, -4.001 ], "step_params": [ 0.023, -1.719, 3.258, 0.594, 1.663, 38.141 ], "heli_params": [ -2.835, 0.039, 3.183, 2.544, -0.908, 38.180 ], "bp2_params": [ 0.147, -0.185, -0.636, 6.965, 5.588, -0.727 ], "groove_widths": [ 18.178, 15.037, 15.178, 15.049 ], "simple_Rise": 3.258, "simple_Twist": 36.513, "simple_hRise": 3.180, "simple_hTwist": 36.554 }, { "index": 15, "nt1": "///A/1204", "nt2": "///A/1043", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.147, -0.185, -0.636, 6.965, 5.588, -0.727 ], "step_params": [ 0.296, -1.795, 3.585, 1.149, 0.296, 30.563 ], "heli_params": [ -3.468, -0.313, 3.576, 0.560, -2.178, 30.585 ], "bp2_params": [ -0.094, -0.221, -0.890, 4.215, 0.322, 1.285 ], "groove_widths": [ 16.626, 14.839, 14.794, 13.826 ], "simple_Rise": 3.585, "simple_Twist": 32.095, "simple_hRise": 3.577, "simple_hTwist": 32.116 }, { "index": 16, "nt1": "///A/1205", "nt2": "///A/1042", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.094, -0.221, -0.890, 4.215, 0.322, 1.285 ], "step_params": [ 0.556, -2.474, 3.504, -20.388, 20.063, 40.754 ], "heli_params": [ -4.287, -2.015, 1.737, 25.397, 25.809, 49.439 ], "bp2_params": [ -0.230, -0.141, 0.211, -2.409, 5.914, 1.642 ], "groove_widths": [ 17.480, 14.928, 15.894, 11.842 ], "simple_Rise": 3.504, "simple_Twist": 41.417, "simple_hRise": 1.767, "simple_hTwist": 49.975 }, { "index": 17, "nt1": "///A/1206", "nt2": "///A/1040", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.230, -0.141, 0.211, -2.409, 5.914, 1.642 ], "step_params": [ -0.507, -1.750, 3.327, -0.185, 4.586, 34.699 ], "heli_params": [ -3.590, 0.816, 3.081, 7.647, 0.309, 34.992 ], "bp2_params": [ 0.216, -0.181, -0.395, 4.006, 1.562, -1.276 ], "groove_widths": [ 18.247, 15.065, 15.808, 9.387 ], "simple_Rise": 3.327, "simple_Twist": 32.597, "simple_hRise": 3.062, "simple_hTwist": 32.910 }, { "index": 18, "nt1": "///A/1207", "nt2": "///A/1039", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.216, -0.181, -0.395, 4.006, 1.562, -1.276 ], "step_params": [ 0.254, -2.254, 3.295, -7.497, 13.185, 28.609 ], "heli_params": [ -6.052, -1.595, 1.968, 24.618, 13.997, 32.307 ], "bp2_params": [ -0.238, -0.187, 0.310, -2.968, 4.674, 0.851 ], "groove_widths": [ 17.876, 15.293, 16.801, 10.581 ], "simple_Rise": 3.295, "simple_Twist": 30.570, "simple_hRise": 2.061, "simple_hTwist": 34.045 }, { "index": 19, "nt1": "///A/1208", "nt2": "///A/1038", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.238, -0.187, 0.310, -2.968, 4.674, 0.851 ], "step_params": [ -0.286, -1.871, 3.117, 0.549, 6.697, 30.718 ], "heli_params": [ -4.574, 0.620, 2.654, 12.455, -1.020, 31.427 ], "bp2_params": [ -0.194, -0.175, -0.069, -0.641, -1.308, -0.404 ], "groove_widths": [ 17.173, 15.517, 19.770, 17.509 ], "simple_Rise": 3.117, "simple_Twist": 30.614, "simple_hRise": 2.652, "simple_hTwist": 31.325 }, { "index": 20, "nt1": "///A/1209", "nt2": "///A/1037", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.194, -0.175, -0.069, -0.641, -1.308, -0.404 ], "step_params": [ -1.042, -2.602, 3.173, -6.503, 4.162, 33.651 ], "heli_params": [ -5.002, 0.795, 2.983, 7.073, 11.053, 34.501 ], "bp2_params": [ 1.134, 0.222, 0.216, -1.063, -0.042, 3.650 ], "groove_widths": [ 16.913, 15.557, 18.985, 15.593 ], "simple_Rise": 3.173, "simple_Twist": 26.608, "simple_hRise": 2.908, "simple_hTwist": 27.686 }, { "index": 21, "nt1": "///A/1210", "nt2": "///A/1226", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.134, 0.222, 0.216, -1.063, -0.042, 3.650 ], "step_params": [ 0.138, -1.860, 3.091, -1.346, 2.397, 26.898 ], "heli_params": [ -4.539, -0.610, 2.907, 5.135, 2.884, 27.035 ], "bp2_params": [ 0.189, -0.146, 0.432, 3.445, -0.137, 2.410 ], "groove_widths": [ 18.021, 16.527, 18.266, 16.213 ], "simple_Rise": 3.091, "simple_Twist": 31.894, "simple_hRise": 2.939, "simple_hTwist": 32.009 }, { "index": 22, "nt1": "///A/1211", "nt2": "///A/1225", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.189, -0.146, 0.432, 3.445, -0.137, 2.410 ], "step_params": [ -0.203, -1.598, 3.338, 1.662, 0.606, 31.645 ], "heli_params": [ -3.040, 0.682, 3.293, 1.111, -3.044, 31.693 ], "bp2_params": [ -0.092, -0.087, 0.497, 2.140, -3.875, 1.496 ], "groove_widths": [ 17.902, 16.003, 17.264, 14.411 ], "simple_Rise": 3.338, "simple_Twist": 33.251, "simple_hRise": 3.296, "simple_hTwist": 33.297 }, { "index": 23, "nt1": "///A/1212", "nt2": "///A/1224", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.092, -0.087, 0.497, 2.140, -3.875, 1.496 ], "step_params": [ -0.026, -1.671, 2.777, 1.556, 8.508, 27.901 ], "heli_params": [ -4.752, 0.314, 2.178, 17.131, -3.133, 29.185 ], "bp2_params": [ -0.205, -0.131, -0.116, 4.458, 6.456, 2.066 ], "groove_widths": [ 16.869, 15.133, 15.756, 13.372 ], "simple_Rise": 2.777, "simple_Twist": 28.627, "simple_hRise": 2.196, "simple_hTwist": 29.879 }, { "index": 24, "nt1": "///A/1213", "nt2": "///A/1223", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.205, -0.131, -0.116, 4.458, 6.456, 2.066 ], "step_params": [ -0.428, -1.875, 3.294, 3.359, 5.700, 40.763 ], "heli_params": [ -3.251, 0.956, 2.974, 8.119, -4.783, 41.274 ], "bp2_params": [ -0.052, -0.182, -0.589, 2.617, 11.171, -12.293 ], "groove_widths": [ 17.280, null, 14.760, null ], "simple_Rise": 3.294, "simple_Twist": 40.227, "simple_hRise": 2.969, "simple_hTwist": 40.745 }, { "index": 25, "nt1": "///A/1214", "nt2": "///A/1222", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.052, -0.182, -0.589, 2.617, 11.171, -12.293 ], "step_params": [ 0.060, -1.147, 2.820, 2.580, 8.595, 30.507 ], "heli_params": [ -3.382, 0.277, 2.413, 15.907, -4.775, 31.769 ], "bp2_params": [ -0.090, -0.307, -0.984, 15.714, 9.257, -5.466 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.820, "simple_Twist": 30.266, "simple_hRise": 2.409, "simple_hTwist": 31.539 }, { "index": 26, "nt1": "///A/1215", "nt2": "///A/1221", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.090, -0.307, -0.984, 15.714, 9.257, -5.466 ], "step_params": [ 1.369, -0.660, 2.940, 10.184, 14.849, 30.602 ], "heli_params": [ -3.107, -0.865, 2.666, 25.548, -17.523, 35.397 ], "bp2_params": [ -0.153, -0.329, -1.438, 22.501, -11.293, 10.070 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.940, "simple_Twist": 31.801, "simple_hRise": 2.687, "simple_hTwist": 36.430 }, { "index": 27, "nt1": "///A/1216", "nt2": "///A/1220", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 39, "num_stems": 2, "strand1": "GAAGCCAGUCC", "strand2": "AGGUGGUCAGG", "bp_type": "...||||||||", "helix_form": "...AAAAxxA", "helical_rise": 2.803, "helical_rise_std": 0.885, "helical_radius": 8.742, "helical_radius_std": 1.993, "helical_axis": [ 0.377, -0.659, -0.651 ], "point1": [ 119.200, 180.038, 197.103 ], "point2": [ 129.617, 161.814, 179.105 ], "num_pairs": 11, "pairs": [ { "index": 1, "nt1": "///A/1252", "nt2": "///A/1277", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.355, -4.322, 1.074, 19.055, 13.881, 6.426 ], "step_params": [ -1.543, -1.742, 4.914, 1.828, -7.690, -12.335 ], "heli_params": [ 16.120, -3.847, 3.424, 31.855, 7.572, -14.642 ], "bp2_params": [ -7.053, -5.204, 0.172, -40.372, 2.945, -12.208 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.914, "simple_Twist": 88.019, "simple_hRise": 4.997, "simple_hTwist": 88.301 }, { "index": 2, "nt1": "///A/1253", "nt2": "///A/1276", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -7.053, -5.204, 0.172, -40.372, 2.945, -12.208 ], "step_params": [ -0.133, 0.310, 3.564, -12.359, 1.739, 33.456 ], "heli_params": [ 0.228, -1.760, 3.411, 2.898, 20.599, 35.646 ], "bp2_params": [ -7.008, -3.942, -0.321, -15.286, 8.849, 4.976 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.564, "simple_Twist": 27.926, "simple_hRise": 3.336, "simple_hTwist": 30.537 }, { "index": 3, "nt1": "///A/1254", "nt2": "///A/1275", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -7.008, -3.942, -0.321, -15.286, 8.849, 4.976 ], "step_params": [ 0.155, -0.568, 2.943, -6.540, 4.107, 60.519 ], "heli_params": [ -0.736, -0.432, 2.874, 4.057, 6.460, 60.964 ], "bp2_params": [ -1.278, -0.568, 0.033, 2.149, 9.833, -3.984 ], "groove_widths": [ 17.693, null, 11.479, null ], "simple_Rise": 2.943, "simple_Twist": 20.151, "simple_hRise": 2.598, "simple_hTwist": 21.566 }, { "index": 4, "nt1": "///A/1255", "nt2": "///A/1274", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.278, -0.568, 0.033, 2.149, 9.833, -3.984 ], "step_params": [ 0.611, -1.955, 3.244, 2.366, 3.340, 37.388 ], "heli_params": [ -3.456, -0.648, 3.096, 5.191, -3.677, 37.603 ], "bp2_params": [ 0.201, -0.142, -0.107, 3.023, 4.119, 2.066 ], "groove_widths": [ 17.133, 15.207, 13.653, 11.779 ], "simple_Rise": 3.244, "simple_Twist": 29.137, "simple_hRise": 3.045, "simple_hTwist": 29.417 }, { "index": 5, "nt1": "///A/1256", "nt2": "///A/1273", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.201, -0.142, -0.107, 3.023, 4.119, 2.066 ], "step_params": [ 0.258, -1.884, 3.225, 3.011, 9.276, 33.648 ], "heli_params": [ -4.412, -0.013, 2.641, 15.621, -5.071, 34.993 ], "bp2_params": [ 0.187, -0.158, 0.188, 1.082, 4.456, 0.472 ], "groove_widths": [ 17.596, 16.304, 15.586, 12.218 ], "simple_Rise": 3.225, "simple_Twist": 33.746, "simple_hRise": 2.643, "simple_hTwist": 35.087 }, { "index": 6, "nt1": "///A/1257", "nt2": "///A/1272", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.187, -0.158, 0.188, 1.082, 4.456, 0.472 ], "step_params": [ 0.442, -2.143, 2.996, 2.465, 10.288, 28.384 ], "heli_params": [ -5.795, -0.441, 2.137, 20.118, -4.820, 30.253 ], "bp2_params": [ -0.011, -0.095, 0.458, 1.584, 8.850, -0.732 ], "groove_widths": [ 16.167, 14.193, 16.057, 11.960 ], "simple_Rise": 2.996, "simple_Twist": 29.320, "simple_hRise": 2.168, "simple_hTwist": 31.131 }, { "index": 7, "nt1": "///A/1258", "nt2": "///A/1271", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.011, -0.095, 0.458, 1.584, 8.850, -0.732 ], "step_params": [ 0.695, -1.616, 3.059, 3.462, 6.910, 30.180 ], "heli_params": [ -4.191, -0.704, 2.693, 13.005, -6.516, 31.132 ], "bp2_params": [ -0.162, -0.170, 0.211, 7.800, 4.419, -0.355 ], "groove_widths": [ 16.417, 13.097, 16.542, 14.121 ], "simple_Rise": 3.059, "simple_Twist": 31.468, "simple_hRise": 2.711, "simple_hTwist": 32.380 }, { "index": 8, "nt1": "///A/1259", "nt2": "///A/1270", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.162, -0.170, 0.211, 7.800, 4.419, -0.355 ], "step_params": [ -1.889, -1.538, 3.021, 4.701, 0.553, 52.643 ], "heli_params": [ -1.760, 2.395, 2.839, 0.622, -5.288, 52.840 ], "bp2_params": [ -0.857, -0.358, -0.502, 10.468, -7.860, -7.422 ], "groove_widths": [ 17.497, null, 17.663, null ], "simple_Rise": 3.021, "simple_Twist": 56.453, "simple_hRise": 2.854, "simple_hTwist": 56.635 }, { "index": 9, "nt1": "///A/591", "nt2": "///A/1269", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.857, -0.358, -0.502, 10.468, -7.860, -7.422 ], "step_params": [ 1.823, -2.993, 3.746, -0.926, 1.859, 12.848 ], "heli_params": [ -15.380, -9.125, 3.143, 8.239, 4.102, 13.014 ], "bp2_params": [ 0.220, -0.139, 0.095, 1.320, 1.259, -0.679 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.746, "simple_Twist": 6.736, "simple_hRise": 2.552, "simple_hTwist": 7.049 }, { "index": 10, "nt1": "///A/1261", "nt2": "///A/1268", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.220, -0.139, 0.095, 1.320, 1.259, -0.679 ], "step_params": [ -0.220, -2.193, 3.295, -1.058, 1.007, 33.444 ], "heli_params": [ -3.973, 0.208, 3.234, 1.749, 1.838, 33.475 ], "bp2_params": [ 0.165, -0.229, 0.521, 1.266, 0.980, -1.513 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.295, "simple_Twist": 33.736, "simple_hRise": 3.235, "simple_hTwist": 33.767 }, { "index": 11, "nt1": "///A/1262", "nt2": "///A/1267", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 40, "num_stems": 4, "strand1": "AGCCGGUAUGUUAGCCGAGACUCUCGUU", "strand2": "GCGGCCAUUAAAGUGGCUCAGAGAGCAA", "bp_type": ".|||||||.....||||||.||||||||", "helix_form": "xAAAAAx..xx..Ax.A.x.AAAAAAA", "helical_rise": 2.520, "helical_rise_std": 1.670, "helical_radius": 10.592, "helical_radius_std": 4.611, "helical_axis": [ 0.723, -0.345, 0.598 ], "point1": [ 145.952, 173.282, 189.789 ], "point2": [ 195.265, 149.744, 230.594 ], "num_pairs": 28, "pairs": [ { "index": 1, "nt1": "///A/1294", "nt2": "///A/629", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.455, -3.184, 1.561, 14.364, -15.821, -8.362 ], "step_params": [ 2.327, -1.248, 3.397, -5.783, 25.426, 55.183 ], "heli_params": [ -2.401, -2.571, 2.431, 25.901, 5.892, 60.593 ], "bp2_params": [ -0.218, -0.227, 0.750, 1.770, 9.088, 1.079 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.397, "simple_Twist": 15.935, "simple_hRise": 0.318, "simple_hTwist": 30.487 }, { "index": 2, "nt1": "///A/1296", "nt2": "///A/628", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.218, -0.227, 0.750, 1.770, 9.088, 1.079 ], "step_params": [ -0.628, -1.582, 3.251, 3.626, 5.755, 39.910 ], "heli_params": [ -2.902, 1.296, 2.939, 8.357, -5.266, 40.463 ], "bp2_params": [ 0.184, -0.152, 0.306, 3.331, 5.563, -0.123 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.251, "simple_Twist": 37.849, "simple_hRise": 2.918, "simple_hTwist": 38.433 }, { "index": 3, "nt1": "///A/1297", "nt2": "///A/627", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.184, -0.152, 0.306, 3.331, 5.563, -0.123 ], "step_params": [ 0.234, -1.602, 3.350, 3.249, 2.720, 33.463 ], "heli_params": [ -3.206, 0.129, 3.222, 4.701, -5.614, 33.722 ], "bp2_params": [ 0.168, -0.163, 0.386, 2.655, 2.615, -0.204 ], "groove_widths": [ 17.978, null, 15.281, null ], "simple_Rise": 3.350, "simple_Twist": 33.539, "simple_hRise": 3.222, "simple_hTwist": 33.798 }, { "index": 4, "nt1": "///A/1298", "nt2": "///A/626", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.168, -0.163, 0.386, 2.655, 2.615, -0.204 ], "step_params": [ 0.020, -1.651, 3.035, 1.869, 19.343, 30.470 ], "heli_params": [ -4.848, 0.177, 1.716, 32.936, -3.182, 36.016 ], "bp2_params": [ -0.167, -0.165, 0.290, -2.331, 0.723, -0.570 ], "groove_widths": [ 18.038, 16.578, 14.318, 8.345 ], "simple_Rise": 3.035, "simple_Twist": 32.581, "simple_hRise": 1.808, "simple_hTwist": 37.801 }, { "index": 5, "nt1": "///A/1299", "nt2": "///A/625", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.167, -0.165, 0.290, -2.331, 0.723, -0.570 ], "step_params": [ 0.203, -1.544, 3.111, -0.656, 2.794, 33.436 ], "heli_params": [ -3.100, -0.452, 2.972, 4.844, 1.137, 33.556 ], "bp2_params": [ -0.204, -0.151, 0.353, 1.921, 0.183, 1.124 ], "groove_widths": [ 17.597, 16.374, 14.214, 13.483 ], "simple_Rise": 3.111, "simple_Twist": 33.584, "simple_hRise": 2.972, "simple_hTwist": 33.703 }, { "index": 6, "nt1": "///A/1300", "nt2": "///A/624", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.204, -0.151, 0.353, 1.921, 0.183, 1.124 ], "step_params": [ 0.295, -1.457, 3.258, 4.990, 0.839, 33.671 ], "heli_params": [ -2.622, 0.290, 3.231, 1.439, -8.555, 34.038 ], "bp2_params": [ 0.028, -0.088, -0.192, 5.150, -2.036, -2.761 ], "groove_widths": [ 16.630, 15.500, 21.639, 21.628 ], "simple_Rise": 3.258, "simple_Twist": 32.685, "simple_hRise": 3.229, "simple_hTwist": 33.064 }, { "index": 7, "nt1": "///A/1301", "nt2": "///A/623", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.028, -0.088, -0.192, 5.150, -2.036, -2.761 ], "step_params": [ -1.307, -3.461, 3.114, -10.918, 6.336, 9.189 ], "heli_params": [ -16.937, -2.401, 1.348, 27.148, 46.780, 15.602 ], "bp2_params": [ 0.225, -0.071, 0.821, -1.800, 4.561, 0.539 ], "groove_widths": [ 16.581, 15.926, 19.970, 17.805 ], "simple_Rise": 3.114, "simple_Twist": 7.394, "simple_hRise": 1.055, "simple_hTwist": 14.621 }, { "index": 8, "nt1": "///A/1302", "nt2": "///A/2046", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.225, -0.071, 0.821, -1.800, 4.561, 0.539 ], "step_params": [ -0.399, -1.397, 3.232, -2.867, 3.435, 44.761 ], "heli_params": [ -2.129, 0.269, 3.141, 4.497, 3.753, 44.973 ], "bp2_params": [ 2.008, -1.129, 0.929, -1.073, 6.584, 10.061 ], "groove_widths": [ 20.259, 9.751, 15.662, 14.580 ], "simple_Rise": 3.232, "simple_Twist": 33.789, "simple_hRise": 3.102, "simple_hTwist": 34.076 }, { "index": 9, "nt1": "///A/1303", "nt2": "///A/2045", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.008, -1.129, 0.929, -1.073, 6.584, 10.061 ], "step_params": [ -2.282, -0.354, 4.176, 18.098, 27.532, 63.923 ], "heli_params": [ -1.446, 2.713, 3.160, 24.392, -16.034, 71.106 ], "bp2_params": [ 6.457, -3.928, 0.905, -25.274, -19.877, -9.876 ], "groove_widths": [ 24.097, 5.747, 11.066, 10.792 ], "simple_Rise": 4.176, "simple_Twist": 32.395, "simple_hRise": 1.905, "simple_hTwist": 45.889 }, { "index": 10, "nt1": "///A/1304", "nt2": "///A/2044", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.457, -3.928, 0.905, -25.274, -19.877, -9.876 ], "step_params": [ -2.671, 3.434, 2.578, -0.250, 12.966, 75.727 ], "heli_params": [ 2.440, 2.147, 3.052, 10.489, 0.202, 76.665 ], "bp2_params": [ -2.450, 1.542, -1.428, -1.694, 18.207, 91.928 ], "groove_widths": [ 23.226, 15.044, 11.289, 11.150 ], "simple_Rise": 2.578, "simple_Twist": 144.349, "simple_hRise": 2.702, "simple_hTwist": 144.585 }, { "index": 11, "nt1": "///A/794", "nt2": "///A/2043", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "bp1_params": [ -2.450, 1.542, -1.428, -1.694, 18.207, 91.928 ], "step_params": [ 1.142, -2.529, 4.245, -13.549, -5.755, -49.570 ], "heli_params": [ 3.417, 0.109, 4.107, 6.695, -15.762, -51.577 ], "bp2_params": [ 4.192, -1.975, 0.347, -0.678, -7.786, -93.338 ], "groove_widths": [ 20.095, 19.074, 17.177, 14.052 ], "simple_Rise": 4.245, "simple_Twist": -99.620, "simple_hRise": 4.227, "simple_hTwist": -100.415 }, { "index": 12, "nt1": "///A/1307", "nt2": "///A/2042", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 4.192, -1.975, 0.347, -0.678, -7.786, -93.338 ], "step_params": [ 4.540, -0.857, 3.453, -6.631, -15.434, -4.245 ], "heli_params": [ 15.366, 9.696, 1.823, 69.752, -29.969, -17.322 ], "bp2_params": [ -6.826, -3.757, 0.501, -2.916, 1.922, -7.783 ], "groove_widths": [ 18.024, 16.669, 28.341, 24.959 ], "simple_Rise": 3.453, "simple_Twist": 64.196, "simple_hRise": 3.135, "simple_hTwist": 66.130 }, { "index": 13, "nt1": "///A/1308", "nt2": "///A/2041", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.826, -3.757, 0.501, -2.916, 1.922, -7.783 ], "step_params": [ 0.504, -1.278, 3.377, -4.297, 2.952, 52.177 ], "heli_params": [ -1.644, -0.857, 3.257, 3.346, 4.871, 52.419 ], "bp2_params": [ -1.879, -0.367, 0.391, 1.389, 3.504, -2.880 ], "groove_widths": [ 17.589, 15.640, 11.364, 10.892 ], "simple_Rise": 3.377, "simple_Twist": 19.357, "simple_hRise": 2.969, "simple_hTwist": 20.041 }, { "index": 14, "nt1": "///A/1309", "nt2": "///A/2040", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.879, -0.367, 0.391, 1.389, 3.504, -2.880 ], "step_params": [ 0.277, -1.743, 3.358, 0.644, 3.706, 40.364 ], "heli_params": [ -2.932, -0.328, 3.196, 5.357, -0.931, 40.531 ], "bp2_params": [ 0.171, -0.102, 0.331, 2.278, 2.110, 0.807 ], "groove_widths": [ 17.946, 15.443, 14.474, 10.410 ], "simple_Rise": 3.358, "simple_Twist": 29.110, "simple_hRise": 3.122, "simple_hTwist": 29.347 }, { "index": 15, "nt1": "///A/1310", "nt2": "///A/2039", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.171, -0.102, 0.331, 2.278, 2.110, 0.807 ], "step_params": [ -0.080, -2.610, 3.285, 4.840, 8.587, 33.916 ], "heli_params": [ -5.462, 0.783, 2.535, 14.348, -8.086, 35.279 ], "bp2_params": [ 0.187, -0.201, 0.563, 5.846, 7.980, 2.211 ], "groove_widths": [ 18.285, 16.053, 16.194, 8.244 ], "simple_Rise": 3.285, "simple_Twist": 33.745, "simple_hRise": 2.531, "simple_hTwist": 35.115 }, { "index": 16, "nt1": "///A/1693", "nt2": "///A/2038", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.187, -0.201, 0.563, 5.846, 7.980, 2.211 ], "step_params": [ 1.151, -2.577, 3.047, 12.414, 27.770, 26.416 ], "heli_params": [ -5.949, -0.701, 0.629, 45.605, -20.387, 40.082 ], "bp2_params": [ -0.182, -0.123, -0.098, -6.109, -1.519, 1.000 ], "groove_widths": [ 17.848, 15.830, 16.818, 4.144 ], "simple_Rise": 3.047, "simple_Twist": 28.702, "simple_hRise": 0.780, "simple_hTwist": 41.588 }, { "index": 17, "nt1": "///A/1694", "nt2": "///A/2037", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.182, -0.123, -0.098, -6.109, -1.519, 1.000 ], "step_params": [ -0.131, -1.760, 2.956, -3.221, 5.978, 34.312 ], "heli_params": [ -3.707, -0.201, 2.623, 10.012, 5.394, 34.958 ], "bp2_params": [ 0.067, -0.108, 0.253, -4.420, -5.982, -2.439 ], "groove_widths": [ 21.319, 14.751, 19.684, 10.361 ], "simple_Rise": 2.956, "simple_Twist": 32.763, "simple_hRise": 2.604, "simple_hTwist": 33.440 }, { "index": 18, "nt1": "///A/1695", "nt2": "///A/2036", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.067, -0.108, 0.253, -4.420, -5.982, -2.439 ], "step_params": [ 0.714, -2.221, 2.820, 11.547, 8.110, 32.179 ], "heli_params": [ -4.687, 0.240, 2.324, 13.831, -19.693, 35.062 ], "bp2_params": [ -0.186, -0.168, -0.164, 16.904, -1.383, -1.113 ], "groove_widths": [ 24.620, 14.061, 14.330, 12.364 ], "simple_Rise": 2.820, "simple_Twist": 33.792, "simple_hRise": 2.355, "simple_hTwist": 36.540 }, { "index": 19, "nt1": "///A/1696", "nt2": "///A/2035", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.186, -0.168, -0.164, 16.904, -1.383, -1.113 ], "step_params": [ -5.337, -5.687, 6.390, 30.832, 36.683, 65.315 ], "heli_params": [ -5.776, 5.290, 1.230, 30.216, -25.397, 79.406 ], "bp2_params": [ -6.492, -4.176, 0.655, 2.441, 7.858, -18.983 ], "groove_widths": [ 22.104, 13.943, 11.186, 10.420 ], "simple_Rise": 6.390, "simple_Twist": 106.283, "simple_hRise": 3.845, "simple_hTwist": 113.519 }, { "index": 20, "nt1": "///A/1700", "nt2": "///A/2034", "bp": "A-A", "name": "~Sheared", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.492, -4.176, 0.655, 2.441, 7.858, -18.983 ], "step_params": [ 0.930, -1.270, 3.220, 0.267, 3.510, 65.432 ], "heli_params": [ -1.314, -0.849, 3.159, 3.245, -0.246, 65.516 ], "bp2_params": [ 0.163, -0.160, 0.339, 3.616, 1.360, -0.200 ], "groove_widths": [ 19.051, 14.209, 12.944, 12.253 ], "simple_Rise": 3.220, "simple_Twist": 22.412, "simple_hRise": 2.998, "simple_hTwist": 22.684 }, { "index": 21, "nt1": "///A/1701", "nt2": "///A/2033", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.163, -0.160, 0.339, 3.616, 1.360, -0.200 ], "step_params": [ -1.064, -2.407, 3.096, -4.734, 10.736, 24.965 ], "heli_params": [ -7.236, 1.273, 2.067, 23.264, 10.259, 27.545 ], "bp2_params": [ -0.637, -0.018, 0.546, 4.844, 11.462, -4.154 ], "groove_widths": [ 17.931, 15.443, 13.399, 10.605 ], "simple_Rise": 3.096, "simple_Twist": 29.137, "simple_hRise": 2.232, "simple_hTwist": 31.363 }, { "index": 22, "nt1": "///A/1702", "nt2": "///A/2032", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.637, -0.018, 0.546, 4.844, 11.462, -4.154 ], "step_params": [ 0.704, -1.881, 3.181, -1.320, 3.880, 36.185 ], "heli_params": [ -3.517, -1.300, 2.944, 6.222, 2.117, 36.408 ], "bp2_params": [ 0.224, -0.254, 0.744, 4.187, 5.856, 0.917 ], "groove_widths": [ 17.789, 16.084, 15.246, 9.764 ], "simple_Rise": 3.181, "simple_Twist": 31.885, "simple_hRise": 2.907, "simple_hTwist": 32.140 }, { "index": 23, "nt1": "///A/1703", "nt2": "///A/2031", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.224, -0.254, 0.744, 4.187, 5.856, 0.917 ], "step_params": [ 0.054, -2.013, 3.086, 1.120, 4.123, 35.244 ], "heli_params": [ -3.851, 0.060, 2.840, 6.779, -1.842, 35.494 ], "bp2_params": [ -0.035, -0.182, 0.467, 6.034, 7.289, 1.965 ], "groove_widths": [ 17.543, 15.526, 16.361, 11.389 ], "simple_Rise": 3.086, "simple_Twist": 36.431, "simple_hRise": 2.849, "simple_hTwist": 36.673 }, { "index": 24, "nt1": "///A/1704", "nt2": "///A/2030", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.035, -0.182, 0.467, 6.034, 7.289, 1.965 ], "step_params": [ 0.692, -2.344, 3.172, 13.886, 12.821, 30.590 ], "heli_params": [ -5.438, 0.640, 2.163, 21.877, -23.696, 35.839 ], "bp2_params": [ 0.154, -0.195, -0.708, -2.898, -5.280, 1.403 ], "groove_widths": [ 17.163, 15.001, 17.418, 13.632 ], "simple_Rise": 3.172, "simple_Twist": 29.220, "simple_hRise": 2.108, "simple_hTwist": 34.687 }, { "index": 25, "nt1": "///A/1705", "nt2": "///A/2029", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.154, -0.195, -0.708, -2.898, -5.280, 1.403 ], "step_params": [ -0.650, -2.031, 3.117, -7.515, 13.286, 32.201 ], "heli_params": [ -4.994, 0.122, 2.226, 22.448, 12.696, 35.549 ], "bp2_params": [ -0.165, -0.190, 0.501, -6.140, 3.975, -0.096 ], "groove_widths": [ 17.298, null, 19.332, null ], "simple_Rise": 3.117, "simple_Twist": 34.546, "simple_hRise": 2.298, "simple_hTwist": 37.673 }, { "index": 26, "nt1": "///A/1706", "nt2": "///A/2028", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.165, -0.190, 0.501, -6.140, 3.975, -0.096 ], "step_params": [ -0.240, -2.241, 3.370, -1.335, 1.686, 23.489 ], "heli_params": [ -6.052, 0.137, 3.212, 4.130, 3.271, 23.586 ], "bp2_params": [ -0.105, -0.069, 0.527, -3.683, 11.905, -0.571 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.370, "simple_Twist": 22.776, "simple_hRise": 3.207, "simple_hTwist": 22.876 }, { "index": 27, "nt1": "///A/1707", "nt2": "///A/2027", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.105, -0.069, 0.527, -3.683, 11.905, -0.571 ], "step_params": [ 0.146, -2.086, 3.013, -0.017, 13.534, 34.517 ], "heli_params": [ -4.756, -0.233, 2.077, 21.799, 0.027, 37.000 ], "bp2_params": [ 0.009, -0.068, 0.464, 4.750, 6.083, 0.562 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.013, "simple_Twist": 34.179, "simple_hRise": 2.067, "simple_hTwist": 36.687 }, { "index": 28, "nt1": "///A/1708", "nt2": "///A/2026", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 41, "num_stems": 1, "strand1": "GCC", "strand2": "CGG", "bp_type": "|||", "helix_form": "A.", "helical_rise": 2.349, "helical_rise_std": 0.084, "helical_radius": 9.473, "helical_radius_std": 1.113, "helical_axis": [ -0.940, 0.194, -0.281 ], "point1": [ 193.238, 189.201, 233.767 ], "point2": [ 188.803, 190.115, 232.443 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/1342", "nt2": "///A/1670", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.221, -0.179, 0.444, 5.063, 15.580, 0.101 ], "step_params": [ -0.505, -2.481, 3.026, 1.597, 9.859, 31.883 ], "heli_params": [ -5.648, 1.095, 2.157, 17.421, -2.821, 33.372 ], "bp2_params": [ 0.206, -0.168, -0.081, 12.972, 18.476, 4.003 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.026, "simple_Twist": 28.983, "simple_hRise": 2.060, "simple_hTwist": 30.621 }, { "index": 2, "nt1": "///A/1343", "nt2": "///A/1669", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.206, -0.168, -0.081, 12.972, 18.476, 4.003 ], "step_params": [ -0.417, -1.721, 2.922, 9.321, 8.367, 32.855 ], "heli_params": [ -3.877, 1.830, 2.234, 14.167, -15.784, 35.100 ], "bp2_params": [ -0.132, -0.244, -1.399, 27.174, 14.028, -7.931 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.922, "simple_Twist": 34.426, "simple_hRise": 2.272, "simple_hTwist": 36.569 }, { "index": 3, "nt1": "///A/1344", "nt2": "///A/1668", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 42, "num_stems": 1, "strand1": "AGGU", "strand2": "GCCA", "bp_type": ".|||", "helix_form": ".Ax", "helical_rise": 3.652, "helical_rise_std": 0.360, "helical_radius": 8.558, "helical_radius_std": 2.533, "helical_axis": [ -0.917, 0.386, -0.095 ], "point1": [ 181.708, 196.342, 233.126 ], "point2": [ 171.506, 200.637, 232.070 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/1347", "nt2": "///A/1651", "bp": "A+G", "name": "--", "Saenger": "--", "LW": "tHH", "DSSR": "tM+M", "bp1_params": [ -8.183, 5.237, -0.648, -22.948, 8.878, -127.079 ], "step_params": [ -0.195, 0.363, 3.870, -0.487, 3.251, 3.202 ], "heli_params": [ -31.155, -2.911, 2.979, 45.258, 6.781, 4.588 ], "bp2_params": [ -0.102, -0.221, -1.129, -11.120, 2.545, -0.852 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.870, "simple_Twist": 12.315, "simple_hRise": 3.840, "simple_hTwist": 12.745 }, { "index": 2, "nt1": "///A/1348", "nt2": "///A/1650", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.102, -0.221, -1.129, -11.120, 2.545, -0.852 ], "step_params": [ 0.720, -1.379, 3.615, -2.011, 9.614, 26.730 ], "heli_params": [ -5.071, -1.938, 2.893, 19.960, 4.175, 28.447 ], "bp2_params": [ -0.144, -0.198, -0.804, -3.978, -0.601, -0.528 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.615, "simple_Twist": 26.959, "simple_hRise": 2.901, "simple_hTwist": 28.661 }, { "index": 3, "nt1": "///A/1349", "nt2": "///A/1649", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.144, -0.198, -0.804, -3.978, -0.601, -0.528 ], "step_params": [ -2.805, -0.991, 3.128, -0.663, 3.884, 58.485 ], "heli_params": [ -1.205, 2.833, 3.092, 3.971, 0.678, 58.605 ], "bp2_params": [ -0.198, -0.097, -0.626, 1.076, 3.685, -1.556 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.128, "simple_Twist": 58.127, "simple_hRise": 3.091, "simple_hTwist": 58.249 }, { "index": 4, "nt1": "///A/1352", "nt2": "///A/1648", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 43, "num_stems": 2, "strand1": "CCUGAGGG", "strand2": "GGACUCCC", "bp_type": "||||||||", "helix_form": "AAAAAx.", "helical_rise": 2.828, "helical_rise_std": 0.662, "helical_radius": 9.473, "helical_radius_std": 2.818, "helical_axis": [ -0.053, -0.998, 0.015 ], "point1": [ 160.335, 197.209, 231.913 ], "point2": [ 159.285, 177.593, 232.213 ], "num_pairs": 8, "pairs": [ { "index": 1, "nt1": "///A/1353", "nt2": "///A/1377", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.092, -0.133, -0.219, 0.739, -5.108, 0.434 ], "step_params": [ -0.781, -2.311, 3.611, -7.264, 1.424, 34.475 ], "heli_params": [ -4.053, 0.086, 3.601, 2.370, 12.083, 35.237 ], "bp2_params": [ 0.145, -0.147, -0.086, -5.783, 1.646, -2.031 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.611, "simple_Twist": 34.821, "simple_hRise": 3.602, "simple_hTwist": 35.575 }, { "index": 2, "nt1": "///A/1354", "nt2": "///A/1376", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.145, -0.147, -0.086, -5.783, 1.646, -2.031 ], "step_params": [ -0.374, -1.358, 3.107, -3.480, 3.778, 33.204 ], "heli_params": [ -2.927, 0.115, 2.962, 6.562, 6.045, 33.588 ], "bp2_params": [ -0.071, -0.149, 0.339, 0.029, 1.078, -2.711 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.107, "simple_Twist": 34.493, "simple_hRise": 2.969, "simple_hTwist": 34.862 }, { "index": 3, "nt1": "///A/1355", "nt2": "///A/1375", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.071, -0.149, 0.339, 0.029, 1.078, -2.711 ], "step_params": [ -0.269, -1.603, 3.184, 2.956, 21.054, 30.724 ], "heli_params": [ -4.838, 0.747, 1.737, 34.974, -4.910, 37.217 ], "bp2_params": [ -0.154, -0.177, -0.494, -6.636, -3.997, -0.757 ], "groove_widths": [ 17.616, null, 14.690, null ], "simple_Rise": 3.184, "simple_Twist": 31.211, "simple_hRise": 1.761, "simple_hTwist": 37.615 }, { "index": 4, "nt1": "///A/1356", "nt2": "///A/1374", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.154, -0.177, -0.494, -6.636, -3.997, -0.757 ], "step_params": [ -0.321, -1.696, 3.119, -4.910, 1.593, 29.739 ], "heli_params": [ -3.565, -0.331, 3.038, 3.075, 9.476, 30.174 ], "bp2_params": [ 0.054, -0.091, -0.092, -3.351, -3.942, -4.463 ], "groove_widths": [ 19.816, 13.816, 14.382, 9.374 ], "simple_Rise": 3.119, "simple_Twist": 28.275, "simple_hRise": 3.031, "simple_hTwist": 28.733 }, { "index": 5, "nt1": "///A/1357", "nt2": "///A/1373", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.054, -0.091, -0.092, -3.351, -3.942, -4.463 ], "step_params": [ 0.299, -1.942, 3.011, 5.040, 6.313, 37.124 ], "heli_params": [ -3.694, 0.106, 2.674, 9.773, -7.803, 37.963 ], "bp2_params": [ -0.132, -0.223, -0.789, 5.410, 6.373, -1.152 ], "groove_widths": [ 20.428, null, 9.648, null ], "simple_Rise": 3.011, "simple_Twist": 38.732, "simple_hRise": 2.691, "simple_hTwist": 39.534 }, { "index": 6, "nt1": "///A/1358", "nt2": "///A/1372", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.132, -0.223, -0.789, 5.410, 6.373, -1.152 ], "step_params": [ -5.180, -0.562, 4.531, 4.155, 11.145, 114.957 ], "heli_params": [ -0.495, 3.126, 4.367, 6.599, -2.460, 115.350 ], "bp2_params": [ 1.129, 0.383, -0.192, -8.044, -12.654, -5.247 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.531, "simple_Twist": 107.562, "simple_hRise": 4.341, "simple_hTwist": 108.013 }, { "index": 7, "nt1": "///A/1362", "nt2": "///A/1370", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.129, 0.383, -0.192, -8.044, -12.654, -5.247 ], "step_params": [ 0.702, -1.682, 3.136, 1.522, 6.694, 21.699 ], "heli_params": [ -6.409, -1.291, 2.551, 17.235, -3.919, 22.747 ], "bp2_params": [ -0.165, -0.270, -0.793, 0.036, -1.528, 0.749 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.136, "simple_Twist": 28.858, "simple_hRise": 2.718, "simple_hTwist": 29.647 }, { "index": 8, "nt1": "///A/1363", "nt2": "///A/1369", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 44, "num_stems": 3, "strand1": "UACCCCUCCACCGAGGAG", "strand2": "GUGGGGAGGUGGAUCCUA", "bp_type": "..||||||||||.||||.", "helix_form": "xxAAAAAx..A.x.AA.", "helical_rise": 3.171, "helical_rise_std": 0.825, "helical_radius": 8.819, "helical_radius_std": 2.886, "helical_axis": [ 0.993, 0.115, -0.021 ], "point1": [ 154.434, 170.770, 246.711 ], "point2": [ 207.914, 176.961, 245.555 ], "num_pairs": 18, "pairs": [ { "index": 1, "nt1": "///A/1368", "nt2": "///A/1322", "bp": "U+G", "name": "--", "Saenger": "--", "LW": "cHS", "DSSR": "cM+m", "bp1_params": [ -7.858, -1.498, -0.019, -29.664, -3.576, -31.151 ], "step_params": [ 2.752, -1.510, 4.089, -19.309, 6.643, 172.819 ], "heli_params": [ -0.764, -1.400, 4.055, 3.328, 9.673, 172.933 ], "bp2_params": [ -3.865, -1.457, 0.349, -6.364, 16.429, -92.172 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.089, "simple_Twist": -72.560, "simple_hRise": 4.701, "simple_hTwist": -74.997 }, { "index": 2, "nt1": "///A/1325", "nt2": "///A/1321", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -3.865, -1.457, 0.349, -6.364, 16.429, -92.172 ], "step_params": [ 1.643, -1.149, 3.416, 4.455, -6.906, 77.912 ], "heli_params": [ -0.705, -1.169, 3.567, -5.478, -3.533, 78.276 ], "bp2_params": [ 0.181, -0.174, -0.770, 12.345, -6.294, 1.045 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.416, "simple_Twist": 54.532, "simple_hRise": 3.639, "simple_hTwist": 55.100 }, { "index": 3, "nt1": "///A/1328", "nt2": "///A/1320", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.181, -0.174, -0.770, 12.345, -6.294, 1.045 ], "step_params": [ -0.556, -1.758, 3.334, -4.982, 9.376, 36.485 ], "heli_params": [ -3.862, 0.240, 2.861, 14.599, 7.758, 37.948 ], "bp2_params": [ 0.201, -0.176, -0.279, 9.739, -6.342, -1.062 ], "groove_widths": [ 17.197, null, 15.228, null ], "simple_Rise": 3.334, "simple_Twist": 36.616, "simple_hRise": 2.863, "simple_hTwist": 38.074 }, { "index": 4, "nt1": "///A/1329", "nt2": "///A/1319", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.201, -0.176, -0.279, 9.739, -6.342, -1.062 ], "step_params": [ -0.079, -1.971, 3.535, -8.001, 8.230, 33.976 ], "heli_params": [ -4.410, -1.042, 2.937, 13.610, 13.232, 35.808 ], "bp2_params": [ 0.185, -0.253, 0.774, -2.773, 4.963, 0.910 ], "groove_widths": [ 17.044, 15.255, 14.771, 12.993 ], "simple_Rise": 3.535, "simple_Twist": 33.694, "simple_hRise": 2.931, "simple_hTwist": 35.541 }, { "index": 5, "nt1": "///A/1330", "nt2": "///A/1318", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.185, -0.253, 0.774, -2.773, 4.963, 0.910 ], "step_params": [ 0.151, -1.865, 3.076, -0.009, 3.028, 33.881 ], "heli_params": [ -3.631, -0.259, 2.904, 5.183, 0.015, 34.012 ], "bp2_params": [ 0.201, -0.284, 0.941, -1.953, 6.536, 2.693 ], "groove_widths": [ 17.483, 15.902, 15.512, 12.819 ], "simple_Rise": 3.076, "simple_Twist": 33.811, "simple_hRise": 2.903, "simple_hTwist": 33.942 }, { "index": 6, "nt1": "///A/1331", "nt2": "///A/1317", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.201, -0.284, 0.941, -1.953, 6.536, 2.693 ], "step_params": [ -0.313, -1.782, 3.114, 0.549, 5.627, 29.442 ], "heli_params": [ -4.492, 0.707, 2.728, 10.944, -1.067, 29.968 ], "bp2_params": [ -0.059, -0.206, 0.869, 2.965, 7.890, 1.879 ], "groove_widths": [ 17.932, 16.555, 17.321, 14.254 ], "simple_Rise": 3.114, "simple_Twist": 30.823, "simple_hRise": 2.748, "simple_hTwist": 31.324 }, { "index": 7, "nt1": "///A/1332", "nt2": "///A/1316", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.059, -0.206, 0.869, 2.965, 7.890, 1.879 ], "step_params": [ 0.223, -1.889, 3.195, 1.214, 2.784, 30.113 ], "heli_params": [ -4.155, -0.193, 3.019, 5.341, -2.329, 30.263 ], "bp2_params": [ 0.174, -0.178, 0.591, 4.468, 5.415, 1.079 ], "groove_widths": [ 17.611, 16.158, 15.300, 13.009 ], "simple_Rise": 3.195, "simple_Twist": 28.612, "simple_hRise": 3.009, "simple_hTwist": 28.770 }, { "index": 8, "nt1": "///A/1333", "nt2": "///A/1315", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.174, -0.178, 0.591, 4.468, 5.415, 1.079 ], "step_params": [ 1.453, -1.785, 3.212, -3.900, 14.112, 46.052 ], "heli_params": [ -3.169, -2.051, 2.472, 17.525, 4.844, 48.202 ], "bp2_params": [ 0.127, 0.079, 0.940, -3.146, -20.260, 9.089 ], "groove_widths": [ 16.843, 14.591, 16.394, 15.422 ], "simple_Rise": 3.212, "simple_Twist": 46.327, "simple_hRise": 2.477, "simple_hTwist": 48.464 }, { "index": 9, "nt1": "///A/1334", "nt2": "///A/1690", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.127, 0.079, 0.940, -3.146, -20.260, 9.089 ], "step_params": [ -1.023, -1.623, 3.899, -0.621, 2.729, 30.977 ], "heli_params": [ -3.640, 1.769, 3.765, 5.096, 1.160, 31.100 ], "bp2_params": [ 0.064, -0.154, -1.078, -12.301, -9.948, 1.757 ], "groove_widths": [ 15.810, 12.890, 17.269, 16.551 ], "simple_Rise": 3.899, "simple_Twist": 31.253, "simple_hRise": 3.766, "simple_hTwist": 31.375 }, { "index": 10, "nt1": "///A/1335", "nt2": "///A/1689", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.064, -0.154, -1.078, -12.301, -9.948, 1.757 ], "step_params": [ -0.977, -1.339, 3.629, -5.122, -0.426, 31.132 ], "heli_params": [ -2.374, 0.715, 3.756, -0.788, 9.462, 31.543 ], "bp2_params": [ 0.169, -0.335, -1.099, -7.564, -1.836, 2.007 ], "groove_widths": [ 16.224, 14.411, 17.877, 16.511 ], "simple_Rise": 3.629, "simple_Twist": 30.763, "simple_hRise": 3.757, "simple_hTwist": 31.179 }, { "index": 11, "nt1": "///A/1336", "nt2": "///A/1688", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.169, -0.335, -1.099, -7.564, -1.836, 2.007 ], "step_params": [ -0.527, -1.521, 3.523, -7.973, 5.324, 27.971 ], "heli_params": [ -4.182, -0.760, 3.211, 10.626, 15.915, 29.537 ], "bp2_params": [ 0.158, -0.126, -0.029, -3.432, 8.011, 0.521 ], "groove_widths": [ 20.176, 16.919, 15.372, 13.163 ], "simple_Rise": 3.523, "simple_Twist": 28.030, "simple_hRise": 3.212, "simple_hTwist": 29.593 }, { "index": 12, "nt1": "///A/1337", "nt2": "///A/1687", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.158, -0.126, -0.029, -3.432, 8.011, 0.521 ], "step_params": [ -0.711, -0.726, 3.136, 0.348, 5.380, 54.681 ], "heli_params": [ -1.091, 0.790, 3.053, 5.841, -0.378, 54.926 ], "bp2_params": [ 6.840, -3.871, -0.073, 10.525, 6.543, -9.508 ], "groove_widths": [ 22.280, 17.029, 6.129, 6.079 ], "simple_Rise": 3.136, "simple_Twist": 12.277, "simple_hRise": 2.565, "simple_hTwist": 13.404 }, { "index": 13, "nt1": "///A/1338", "nt2": "///A/1686", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.840, -3.871, -0.073, 10.525, 6.543, -9.508 ], "step_params": [ -0.722, -0.177, 6.288, 15.836, 32.677, 78.511 ], "heli_params": [ -1.599, 1.245, 5.707, 24.653, -11.948, 85.254 ], "bp2_params": [ 0.102, -0.262, -1.413, -13.367, -5.105, -6.941 ], "groove_widths": [ 21.002, 14.907, 5.753, 5.733 ], "simple_Rise": 6.288, "simple_Twist": 120.930, "simple_hRise": 6.110, "simple_hTwist": 124.138 }, { "index": 14, "nt1": "///A/1672", "nt2": "///A/1684", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.102, -0.262, -1.413, -13.367, -5.105, -6.941 ], "step_params": [ -0.742, -2.251, 3.151, -13.624, 11.160, 25.514 ], "heli_params": [ -6.146, -0.958, 2.133, 22.211, 27.116, 30.919 ], "bp2_params": [ -0.139, -0.092, -0.062, -12.099, 6.187, -1.040 ], "groove_widths": [ 20.303, 13.201, 7.767, 7.681 ], "simple_Rise": 3.151, "simple_Twist": 27.448, "simple_hRise": 2.217, "simple_hTwist": 32.521 }, { "index": 15, "nt1": "///A/1673", "nt2": "///A/1683", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.139, -0.092, -0.062, -12.099, 6.187, -1.040 ], "step_params": [ -0.494, -1.671, 3.485, -4.578, 6.159, 29.337 ], "heli_params": [ -4.473, -0.004, 3.117, 11.906, 8.849, 30.303 ], "bp2_params": [ -0.167, -0.134, -0.206, -9.912, 16.899, 0.710 ], "groove_widths": [ 20.146, null, 14.593, null ], "simple_Rise": 3.485, "simple_Twist": 29.708, "simple_hRise": 3.123, "simple_hTwist": 30.662 }, { "index": 16, "nt1": "///A/1674", "nt2": "///A/1682", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.167, -0.134, -0.206, -9.912, 16.899, 0.710 ], "step_params": [ -0.105, -0.875, 3.335, 0.553, 20.037, 33.001 ], "heli_params": [ -3.707, 0.225, 2.431, 31.878, -0.879, 38.466 ], "bp2_params": [ 0.251, -0.057, -0.417, -0.424, 14.160, -5.750 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.335, "simple_Twist": 30.751, "simple_hRise": 2.349, "simple_hTwist": 36.574 }, { "index": 17, "nt1": "///A/1675", "nt2": "///A/1681", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.251, -0.057, -0.417, -0.424, 14.160, -5.750 ], "step_params": [ 1.513, -0.733, 3.116, 0.301, 5.116, 57.544 ], "heli_params": [ -1.018, -1.551, 3.054, 5.303, -0.312, 57.752 ], "bp2_params": [ 7.433, -3.403, 0.352, 20.490, 10.705, 8.294 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.116, "simple_Twist": 10.802, "simple_hRise": 2.542, "simple_hTwist": 11.952 }, { "index": 18, "nt1": "///A/1676", "nt2": "///A/1680", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 45, "num_stems": 1, "strand1": "ACGGG", "strand2": "UGCCC", "bp_type": ".||||", "helix_form": "xAAA", "helical_rise": 2.663, "helical_rise_std": 0.617, "helical_radius": 7.977, "helical_radius_std": 1.486, "helical_axis": [ 0.708, 0.681, -0.190 ], "point1": [ 175.515, 211.671, 238.873 ], "point2": [ 183.079, 218.946, 236.842 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/1381", "nt2": "///A/1647", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.233, -2.534, 1.085, -14.236, 7.023, -84.806 ], "step_params": [ 0.819, -1.600, 3.426, -9.257, 25.481, 82.891 ], "heli_params": [ -1.731, -0.802, 2.853, 18.811, 6.834, 86.444 ], "bp2_params": [ 0.114, -0.133, -0.104, -0.036, -5.081, -1.130 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.426, "simple_Twist": 55.151, "simple_hRise": 2.395, "simple_hTwist": 60.982 }, { "index": 2, "nt1": "///A/1384", "nt2": "///A/1646", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.114, -0.133, -0.104, -0.036, -5.081, -1.130 ], "step_params": [ -0.728, -1.847, 2.797, -12.783, 7.652, 32.421 ], "heli_params": [ -3.955, -0.369, 2.422, 12.890, 21.534, 35.597 ], "bp2_params": [ -0.285, -0.219, 0.548, 6.630, 10.854, 4.172 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.797, "simple_Twist": 35.088, "simple_hRise": 2.465, "simple_hTwist": 38.029 }, { "index": 3, "nt1": "///A/1385", "nt2": "///A/1645", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.285, -0.219, 0.548, 6.630, 10.854, 4.172 ], "step_params": [ -0.012, -2.106, 3.477, 10.512, 12.328, 34.042 ], "heli_params": [ -4.810, 1.334, 2.485, 19.732, -16.825, 37.597 ], "bp2_params": [ -0.158, -0.256, -0.998, -4.779, -1.040, 0.772 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.477, "simple_Twist": 33.569, "simple_hRise": 2.468, "simple_hTwist": 37.173 }, { "index": 4, "nt1": "///A/1386", "nt2": "///A/1644", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.158, -0.256, -0.998, -4.779, -1.040, 0.772 ], "step_params": [ 0.124, -2.083, 3.254, -6.735, 11.279, 31.047 ], "heli_params": [ -5.229, -1.188, 2.304, 19.987, 11.935, 33.648 ], "bp2_params": [ -0.127, -0.154, -0.340, -9.033, 19.968, -1.046 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.254, "simple_Twist": 31.295, "simple_hRise": 2.312, "simple_hTwist": 33.877 }, { "index": 5, "nt1": "///A/1387", "nt2": "///A/1643", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 46, "num_stems": 7, "strand1": "CCUUAGCCGAGGGGCGGGGAGAGAAUGUUGGUACAGCUUGGGU", "strand2": "GGAAGCGGAUCCCCGCCCCCAUCUUCCAGUUAUGUCGGUCCCA", "bp_type": "||...|||...||||||||...|.|.||..||||||||.||||", "helix_form": "Axxx.AA..xxAAAAAx...xx....A..A...AAA...x..", "helical_rise": 2.733, "helical_rise_std": 1.529, "helical_radius": 14.134, "helical_radius_std": 6.096, "helical_axis": [ 0.062, 0.151, -0.987 ], "point1": [ 205.093, 231.504, 233.026 ], "point2": [ 212.166, 248.897, 119.711 ], "num_pairs": 43, "pairs": [ { "index": 1, "nt1": "///A/1389", "nt2": "///A/1420", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.235, -0.134, 0.024, 0.576, 17.508, 3.392 ], "step_params": [ -0.339, -2.754, 3.302, 5.102, 12.900, 35.181 ], "heli_params": [ -5.696, 1.093, 2.130, 20.391, -8.064, 37.736 ], "bp2_params": [ 0.270, -0.209, 0.124, -7.299, 12.367, -11.104 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.302, "simple_Twist": 35.533, "simple_hRise": 2.143, "simple_hTwist": 38.064 }, { "index": 2, "nt1": "///A/1390", "nt2": "///A/1419", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.270, -0.209, 0.124, -7.299, 12.367, -11.104 ], "step_params": [ -2.730, -1.910, 3.157, 1.582, 9.266, 71.911 ], "heli_params": [ -1.900, 2.358, 2.874, 7.858, -1.341, 72.440 ], "bp2_params": [ 4.295, -2.152, 0.317, 1.610, -4.585, -94.569 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.157, "simple_Twist": 46.295, "simple_hRise": 2.660, "simple_hTwist": 47.188 }, { "index": 3, "nt1": "///A/1391", "nt2": "///A/1417", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 4.295, -2.152, 0.317, 1.610, -4.585, -94.569 ], "step_params": [ -1.527, 2.586, 3.977, -11.678, -13.044, 159.174 ], "heli_params": [ 1.356, 0.738, 3.950, -6.629, 5.935, 159.420 ], "bp2_params": [ -1.762, 1.190, 0.437, 60.281, 43.601, -30.953 ], "groove_widths": [ 18.896, null, 9.654, null ], "simple_Rise": 3.977, "simple_Twist": -177.411, "simple_hRise": 3.980, "simple_hTwist": -177.441 }, { "index": 4, "nt1": "///A/1418", "nt2": "///A/1392", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.762, 1.190, 0.437, 60.281, 43.601, -30.953 ], "step_params": [ 2.186, -4.538, 3.120, 34.540, 26.528, -145.671 ], "heli_params": [ 2.245, 1.286, 3.217, -13.821, 17.995, -148.188 ], "bp2_params": [ -6.533, -3.684, -1.202, -1.057, -4.293, -7.340 ], "groove_widths": [ 18.115, 15.853, 7.048, 5.857 ], "simple_Rise": 3.120, "simple_Twist": -100.983, "simple_hRise": 3.285, "simple_hTwist": -107.573 }, { "index": 5, "nt1": "///A/1393", "nt2": "///A/1416", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.533, -3.684, -1.202, -1.057, -4.293, -7.340 ], "step_params": [ 0.528, -0.293, 4.101, -4.874, 1.881, 59.822 ], "heli_params": [ -0.409, -0.829, 4.041, 1.882, 4.877, 60.029 ], "bp2_params": [ -0.205, -0.201, -0.488, -2.318, -3.624, 0.421 ], "groove_widths": [ 16.117, 14.813, 23.007, 22.044 ], "simple_Rise": 4.101, "simple_Twist": 19.470, "simple_hRise": 3.810, "simple_hTwist": 20.153 }, { "index": 6, "nt1": "///A/1394", "nt2": "///A/1415", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.205, -0.201, -0.488, -2.318, -3.624, 0.421 ], "step_params": [ 0.128, -1.504, 3.384, -1.870, -0.330, 35.783 ], "heli_params": [ -2.396, -0.487, 3.387, -0.537, 3.041, 35.831 ], "bp2_params": [ 0.146, -0.154, 0.091, -3.128, -4.214, -0.119 ], "groove_widths": [ 16.412, 15.890, 14.897, 14.892 ], "simple_Rise": 3.384, "simple_Twist": 33.793, "simple_hRise": 3.386, "simple_hTwist": 33.845 }, { "index": 7, "nt1": "///A/1395", "nt2": "///A/1414", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.146, -0.154, 0.091, -3.128, -4.214, -0.119 ], "step_params": [ -0.220, -1.974, 3.031, -4.031, 7.047, 29.174 ], "heli_params": [ -5.011, -0.281, 2.503, 13.660, 7.814, 30.259 ], "bp2_params": [ 0.258, -0.121, 0.302, 3.404, 2.829, 0.272 ], "groove_widths": [ 16.983, 15.925, 14.770, 13.427 ], "simple_Rise": 3.031, "simple_Twist": 28.983, "simple_hRise": 2.499, "simple_hTwist": 30.075 }, { "index": 8, "nt1": "///A/1396", "nt2": "///A/1413", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.258, -0.121, 0.302, 3.404, 2.829, 0.272 ], "step_params": [ -0.752, -0.833, 3.744, 0.677, 1.207, 59.430 ], "heli_params": [ -0.910, 0.797, 3.720, 1.217, -0.683, 59.445 ], "bp2_params": [ 6.907, -3.828, 0.319, 3.663, -3.314, -8.069 ], "groove_widths": [ 17.481, 16.495, 11.490, 10.453 ], "simple_Rise": 3.744, "simple_Twist": 17.023, "simple_hRise": 3.644, "simple_hTwist": 17.078 }, { "index": 9, "nt1": "///A/1397", "nt2": "///A/1412", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.907, -3.828, 0.319, 3.663, -3.314, -8.069 ], "step_params": [ -5.913, -0.489, 3.680, -0.636, 2.722, 0.954 ], "heli_params": [ -86.410, 96.728, 2.011, 69.301, 16.197, 2.954 ], "bp2_params": [ -3.471, -1.364, 0.914, -2.914, 3.155, -98.436 ], "groove_widths": [ 17.132, 13.388, 21.725, 19.852 ], "simple_Rise": 3.680, "simple_Twist": 64.992, "simple_hRise": 3.711, "simple_hTwist": 65.046 }, { "index": 10, "nt1": "///A/1398", "nt2": "///A/1411", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -3.471, -1.364, 0.914, -2.914, 3.155, -98.436 ], "step_params": [ 3.007, -2.359, 4.024, 22.198, 17.617, -65.867 ], "heli_params": [ 1.299, 3.507, 3.450, -15.485, 19.512, -71.069 ], "bp2_params": [ 0.449, 3.539, -1.888, -9.652, -10.904, 138.647 ], "groove_widths": [ 16.357, 6.788, 29.202, 14.825 ], "simple_Rise": 4.024, "simple_Twist": 9.787, "simple_hRise": 2.168, "simple_hTwist": 29.949 }, { "index": 11, "nt1": "///A/1399", "nt2": "///A/2243", "bp": "G+C", "name": "rWC", "Saenger": "22-XXII", "LW": "tWW", "DSSR": "tW+W", "bp1_params": [ 0.449, 3.539, -1.888, -9.652, -10.904, 138.647 ], "step_params": [ 1.882, -4.359, 4.921, 13.280, 9.144, -16.763 ], "heli_params": [ 5.693, 12.139, 4.200, -25.054, 36.388, -23.218 ], "bp2_params": [ -0.155, -0.100, -0.808, -23.698, -2.812, -2.296 ], "groove_widths": [ 18.347, 5.855, 27.051, 13.402 ], "simple_Rise": 4.921, "simple_Twist": -112.294, "simple_hRise": 4.986, "simple_hTwist": -113.052 }, { "index": 12, "nt1": "///A/2244", "nt2": "///A/2238", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.155, -0.100, -0.808, -23.698, -2.812, -2.296 ], "step_params": [ 0.169, -1.715, 3.199, -6.991, 2.382, 28.482 ], "heli_params": [ -3.864, -1.760, 2.926, 4.741, 13.916, 29.404 ], "bp2_params": [ -0.143, -0.132, -0.403, -13.702, 5.398, 1.657 ], "groove_widths": [ 19.374, 10.160, 28.782, 21.349 ], "simple_Rise": 3.199, "simple_Twist": 29.012, "simple_hRise": 2.932, "simple_hTwist": 29.918 }, { "index": 13, "nt1": "///A/2245", "nt2": "///A/2237", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.143, -0.132, -0.403, -13.702, 5.398, 1.657 ], "step_params": [ -0.231, -1.722, 2.958, -2.110, 4.891, 34.108 ], "heli_params": [ -3.563, 0.104, 2.701, 8.276, 3.570, 34.509 ], "bp2_params": [ -0.207, -0.129, -0.102, -3.859, 7.435, 0.653 ], "groove_widths": [ 17.859, 15.043, 16.406, 16.184 ], "simple_Rise": 2.958, "simple_Twist": 34.175, "simple_hRise": 2.702, "simple_hTwist": 34.575 }, { "index": 14, "nt1": "///A/2246", "nt2": "///A/2236", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.207, -0.129, -0.102, -3.859, 7.435, 0.653 ], "step_params": [ 0.456, -1.804, 3.273, -0.873, 2.356, 35.095 ], "heli_params": [ -3.329, -0.881, 3.137, 3.901, 1.445, 35.182 ], "bp2_params": [ 0.158, -0.210, 0.354, -0.828, 4.905, -1.075 ], "groove_widths": [ 17.443, 16.397, 15.313, 12.580 ], "simple_Rise": 3.273, "simple_Twist": 32.967, "simple_hRise": 3.127, "simple_hTwist": 33.060 }, { "index": 15, "nt1": "///A/2247", "nt2": "///A/2235", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.158, -0.210, 0.354, -0.828, 4.905, -1.075 ], "step_params": [ 0.463, -2.537, 2.920, -0.748, 9.999, 30.657 ], "heli_params": [ -5.948, -0.936, 2.003, 18.307, 1.369, 32.218 ], "bp2_params": [ -0.163, -0.467, 1.027, -5.754, -5.953, -4.458 ], "groove_widths": [ 17.404, 15.542, 17.293, 13.961 ], "simple_Rise": 2.920, "simple_Twist": 32.108, "simple_hRise": 2.049, "simple_hTwist": 33.598 }, { "index": 16, "nt1": "///A/2248", "nt2": "///A/2234", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.163, -0.467, 1.027, -5.754, -5.953, -4.458 ], "step_params": [ 0.786, -1.872, 3.006, 4.713, 2.843, 33.344 ], "heli_params": [ -3.642, -0.656, 2.921, 4.914, -8.144, 33.783 ], "bp2_params": [ -0.147, -0.328, 0.846, -3.684, -1.454, -0.585 ], "groove_widths": [ 17.056, 15.198, 15.697, 12.865 ], "simple_Rise": 3.006, "simple_Twist": 33.597, "simple_hRise": 2.922, "simple_hTwist": 34.032 }, { "index": 17, "nt1": "///A/2249", "nt2": "///A/2233", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.147, -0.328, 0.846, -3.684, -1.454, -0.585 ], "step_params": [ 1.940, -1.810, 3.343, -0.321, 0.593, 45.916 ], "heli_params": [ -2.372, -2.514, 3.308, 0.760, 0.411, 45.921 ], "bp2_params": [ -0.153, -0.230, 0.713, -5.576, 3.405, 2.774 ], "groove_widths": [ 16.899, 14.742, 17.242, 14.886 ], "simple_Rise": 3.343, "simple_Twist": 46.390, "simple_hRise": 3.309, "simple_hTwist": 46.395 }, { "index": 18, "nt1": "///A/2250", "nt2": "///A/2231", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.153, -0.230, 0.713, -5.576, 3.405, 2.774 ], "step_params": [ 0.078, -1.733, 2.913, -0.562, 6.410, 32.457 ], "heli_params": [ -3.955, -0.216, 2.532, 11.330, 0.993, 33.072 ], "bp2_params": [ -0.123, -0.205, 0.761, 2.533, 2.318, 1.130 ], "groove_widths": [ 16.905, 14.828, 16.804, 13.803 ], "simple_Rise": 2.913, "simple_Twist": 32.221, "simple_hRise": 2.529, "simple_hTwist": 32.841 }, { "index": 19, "nt1": "///A/2251", "nt2": "///A/2230", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.123, -0.205, 0.761, 2.533, 2.318, 1.130 ], "step_params": [ 0.024, -1.652, 3.169, 2.909, 1.694, 34.822 ], "heli_params": [ -2.992, 0.380, 3.080, 2.823, -4.847, 34.980 ], "bp2_params": [ 2.357, 1.026, 0.487, 6.747, -2.068, 11.185 ], "groove_widths": [ 15.384, 14.518, 14.162, 11.843 ], "simple_Rise": 3.169, "simple_Twist": 22.135, "simple_hRise": 3.014, "simple_hTwist": 22.386 }, { "index": 20, "nt1": "///A/2252", "nt2": "///A/2229", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.357, 1.026, 0.487, 6.747, -2.068, 11.185 ], "step_params": [ -0.518, -2.033, 3.357, 0.939, 6.982, 45.870 ], "heli_params": [ -3.161, 0.736, 3.023, 8.897, -1.196, 46.379 ], "bp2_params": [ 6.792, -4.841, 0.862, 1.153, 4.796, -27.136 ], "groove_widths": [ 15.194, 11.848, 11.057, 10.924 ], "simple_Rise": 3.357, "simple_Twist": 12.574, "simple_hRise": 1.917, "simple_hTwist": 14.406 }, { "index": 21, "nt1": "///A/2253", "nt2": "///A/2228", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.792, -4.841, 0.862, 1.153, 4.796, -27.136 ], "step_params": [ -2.115, -1.140, 3.016, 5.482, -8.644, 20.841 ], "heli_params": [ -0.108, 6.992, 2.639, -22.245, -14.110, 23.194 ], "bp2_params": [ -4.495, -1.773, -0.063, 17.981, -14.368, -93.498 ], "groove_widths": [ 15.892, 10.888, 14.140, 13.700 ], "simple_Rise": 3.016, "simple_Twist": 92.996, "simple_hRise": 2.990, "simple_hTwist": 93.429 }, { "index": 22, "nt1": "///A/2254", "nt2": "///A/2226", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.495, -1.773, -0.063, 17.981, -14.368, -93.498 ], "step_params": [ 1.715, -2.021, 3.048, -12.628, 1.091, 83.881 ], "heli_params": [ -1.524, -1.538, 2.795, 0.812, 9.400, 84.658 ], "bp2_params": [ -0.030, -0.489, 1.400, 7.377, -6.638, -5.105 ], "groove_widths": [ 16.407, 12.712, 10.651, 10.651 ], "simple_Rise": 3.048, "simple_Twist": 56.976, "simple_hRise": 2.611, "simple_hTwist": 58.253 }, { "index": 23, "nt1": "///A/2122", "nt2": "///A/2225", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.030, -0.489, 1.400, 7.377, -6.638, -5.105 ], "step_params": [ 1.297, -1.328, 3.348, 15.366, 30.834, 22.141 ], "heli_params": [ -5.143, -0.249, 1.337, 52.116, -25.971, 40.770 ], "bp2_params": [ -4.561, -1.284, -0.644, -24.925, -67.371, 39.633 ], "groove_widths": [ 17.061, 14.028, 13.062, 13.024 ], "simple_Rise": 3.348, "simple_Twist": 52.124, "simple_hRise": 2.548, "simple_hTwist": 61.808 }, { "index": 24, "nt1": "///A/2123", "nt2": "///A/2224", "bp": "A-U", "name": "--", "Saenger": "--", "LW": ".WS", "DSSR": ".W-m", "bp1_params": [ -4.561, -1.284, -0.644, -24.925, -67.371, 39.633 ], "step_params": [ -4.644, -0.146, 3.283, -25.381, -1.998, 40.001 ], "heli_params": [ 0.050, 2.852, 5.211, -2.624, 33.340, 47.134 ], "bp2_params": [ 0.251, -0.473, -1.523, -5.242, 1.567, -7.475 ], "groove_widths": [ 15.398, 13.535, 18.471, 14.758 ], "simple_Rise": 3.283, "simple_Twist": 8.400, "simple_hRise": 5.441, "simple_hTwist": 26.787 }, { "index": 25, "nt1": "///A/2124", "nt2": "///A/2223", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.251, -0.473, -1.523, -5.242, 1.567, -7.475 ], "step_params": [ -0.639, -1.831, 3.831, -5.894, 0.406, 25.923 ], "heli_params": [ -4.111, -0.453, 3.850, 0.890, 12.925, 26.576 ], "bp2_params": [ -0.694, -1.954, -1.430, -5.567, 2.446, -0.014 ], "groove_widths": [ 15.751, 14.450, 14.955, 12.637 ], "simple_Rise": 3.831, "simple_Twist": 31.778, "simple_hRise": 3.861, "simple_hTwist": 32.308 }, { "index": 26, "nt1": "///A/2125", "nt2": "///A/2222", "bp": "U-C", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.694, -1.954, -1.430, -5.567, 2.446, -0.014 ], "step_params": [ 0.751, -0.885, 3.529, -1.259, 3.271, 35.701 ], "heli_params": [ -1.936, -1.411, 3.409, 5.320, 2.048, 35.867 ], "bp2_params": [ -0.145, -0.199, -0.552, -1.611, 3.483, 0.332 ], "groove_widths": [ 16.969, 15.914, 14.249, 12.995 ], "simple_Rise": 3.529, "simple_Twist": 32.280, "simple_hRise": 3.394, "simple_hTwist": 32.465 }, { "index": 27, "nt1": "///A/2126", "nt2": "///A/2221", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.145, -0.199, -0.552, -1.611, 3.483, 0.332 ], "step_params": [ 0.803, -1.640, 3.166, 2.002, 2.912, 39.234 ], "heli_params": [ -2.762, -0.965, 3.077, 4.326, -2.974, 39.386 ], "bp2_params": [ -0.001, -0.249, -0.631, -0.739, -0.137, 3.592 ], "groove_widths": [ 16.146, 14.772, 13.893, 12.651 ], "simple_Rise": 3.166, "simple_Twist": 38.135, "simple_hRise": 3.074, "simple_hTwist": 38.293 }, { "index": 28, "nt1": "///A/2127", "nt2": "///A/2220", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.001, -0.249, -0.631, -0.739, -0.137, 3.592 ], "step_params": [ 0.824, -1.963, 3.338, 1.963, 5.953, 20.885 ], "heli_params": [ -7.408, -1.448, 2.744, 15.964, -5.264, 21.795 ], "bp2_params": [ 0.375, -0.842, 0.158, -3.368, -5.840, -12.067 ], "groove_widths": [ 15.983, 14.272, 16.917, 16.518 ], "simple_Rise": 3.338, "simple_Twist": 18.507, "simple_hRise": 2.654, "simple_hTwist": 19.531 }, { "index": 29, "nt1": "///A/2128", "nt2": "///A/2219", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.375, -0.842, 0.158, -3.368, -5.840, -12.067 ], "step_params": [ 0.860, -2.128, 3.343, 9.196, 7.491, 33.085 ], "heli_params": [ -4.642, -0.063, 2.935, 12.659, -15.540, 35.090 ], "bp2_params": [ -0.415, -0.998, -0.600, -12.242, -3.456, -6.449 ], "groove_widths": [ 15.973, 14.553, 18.908, 17.404 ], "simple_Rise": 3.343, "simple_Twist": 37.514, "simple_hRise": 3.001, "simple_hTwist": 39.280 }, { "index": 30, "nt1": "///A/2129", "nt2": "///A/2218", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.415, -0.998, -0.600, -12.242, -3.456, -6.449 ], "step_params": [ 0.033, -1.187, 3.039, -2.397, 2.684, 27.965 ], "heli_params": [ -3.008, -0.577, 2.901, 5.526, 4.934, 28.191 ], "bp2_params": [ -0.845, -0.609, -0.496, -6.699, 1.235, 3.652 ], "groove_widths": [ 16.319, 15.005, 18.976, 17.742 ], "simple_Rise": 3.039, "simple_Twist": 30.810, "simple_hRise": 2.917, "simple_hTwist": 31.015 }, { "index": 31, "nt1": "///A/2130", "nt2": "///A/2217", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.845, -0.609, -0.496, -6.699, 1.235, 3.652 ], "step_params": [ 0.938, -1.265, 2.927, -2.857, 3.031, 40.881 ], "heli_params": [ -2.090, -1.606, 2.762, 4.326, 4.078, 41.084 ], "bp2_params": [ -0.007, -0.096, -0.173, 3.136, -0.718, 1.706 ], "groove_widths": [ 16.911, 15.292, 16.885, 15.442 ], "simple_Rise": 2.927, "simple_Twist": 35.875, "simple_hRise": 2.735, "simple_hTwist": 36.108 }, { "index": 32, "nt1": "///A/2131", "nt2": "///A/2216", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.007, -0.096, -0.173, 3.136, -0.718, 1.706 ], "step_params": [ -0.035, -1.050, 3.170, 2.429, 20.943, 28.403 ], "heli_params": [ -4.456, 0.374, 1.956, 36.934, -4.283, 35.243 ], "bp2_params": [ 0.015, -0.209, -0.515, -4.730, -8.526, 6.628 ], "groove_widths": [ 16.572, 14.719, 15.262, 13.277 ], "simple_Rise": 3.170, "simple_Twist": 28.388, "simple_hRise": 1.955, "simple_hTwist": 35.231 }, { "index": 33, "nt1": "///A/2132", "nt2": "///A/2215", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.015, -0.209, -0.515, -4.730, -8.526, 6.628 ], "step_params": [ -0.372, -1.553, 3.031, -0.458, -0.084, 38.321 ], "heli_params": [ -2.356, 0.513, 3.039, -0.127, 0.697, 38.323 ], "bp2_params": [ 0.156, -0.183, -0.434, -2.492, -3.608, 3.016 ], "groove_widths": [ 16.386, 14.774, 16.153, 12.724 ], "simple_Rise": 3.031, "simple_Twist": 37.222, "simple_hRise": 3.039, "simple_hTwist": 37.224 }, { "index": 34, "nt1": "///A/2133", "nt2": "///A/2214", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.156, -0.183, -0.434, -2.492, -3.608, 3.016 ], "step_params": [ -0.252, -1.070, 2.912, -4.849, 13.682, 26.196 ], "heli_params": [ -4.409, -0.339, 2.118, 27.649, 9.799, 29.888 ], "bp2_params": [ -0.057, -0.256, -0.029, 0.049, 0.222, 3.277 ], "groove_widths": [ 17.034, 15.676, 15.159, 13.181 ], "simple_Rise": 2.912, "simple_Twist": 27.473, "simple_hRise": 2.163, "simple_hTwist": 31.007 }, { "index": 35, "nt1": "///A/2134", "nt2": "///A/2213", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.057, -0.256, -0.029, 0.049, 0.222, 3.277 ], "step_params": [ -0.232, -1.575, 3.112, 0.722, 4.987, 31.683 ], "heli_params": [ -3.671, 0.539, 2.831, 9.062, -1.313, 32.071 ], "bp2_params": [ -0.134, -0.191, -0.418, -0.111, 2.578, 1.160 ], "groove_widths": [ 17.147, 15.888, 17.487, 15.660 ], "simple_Rise": 3.112, "simple_Twist": 32.799, "simple_hRise": 2.842, "simple_hTwist": 33.174 }, { "index": 36, "nt1": "///A/2135", "nt2": "///A/2212", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.134, -0.191, -0.418, -0.111, 2.578, 1.160 ], "step_params": [ 0.283, -1.670, 3.091, -0.116, 4.025, 36.153 ], "heli_params": [ -3.190, -0.469, 2.894, 6.461, 0.186, 36.370 ], "bp2_params": [ 0.225, -0.207, -0.347, 2.206, 2.478, 1.168 ], "groove_widths": [ 16.577, 15.257, 18.096, 15.159 ], "simple_Rise": 3.091, "simple_Twist": 33.829, "simple_hRise": 2.878, "simple_hTwist": 34.061 }, { "index": 37, "nt1": "///A/2136", "nt2": "///A/2211", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.225, -0.207, -0.347, 2.206, 2.478, 1.168 ], "step_params": [ 0.477, -1.879, 2.984, -1.338, 5.334, 27.664 ], "heli_params": [ -4.922, -1.247, 2.558, 11.018, 2.763, 28.195 ], "bp2_params": [ 1.279, -0.434, 0.062, 6.877, -3.547, 13.594 ], "groove_widths": [ 16.192, 13.909, 16.672, 11.295 ], "simple_Rise": 2.984, "simple_Twist": 21.115, "simple_hRise": 2.406, "simple_hTwist": 21.811 }, { "index": 38, "nt1": "///A/2137", "nt2": "///A/2210", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.279, -0.434, 0.062, 6.877, -3.547, 13.594 ], "step_params": [ 0.252, -1.370, 3.218, 8.131, 14.850, 32.889 ], "heli_params": [ -3.999, 0.605, 2.398, 24.324, -13.319, 36.883 ], "bp2_params": [ 0.649, -1.596, 0.149, -9.344, -31.968, 21.813 ], "groove_widths": [ 17.829, 14.541, 15.146, 12.535 ], "simple_Rise": 3.218, "simple_Twist": 35.066, "simple_hRise": 2.461, "simple_hTwist": 38.823 }, { "index": 39, "nt1": "///A/2138", "nt2": "///A/2209", "bp": "U-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.649, -1.596, 0.149, -9.344, -31.968, 21.813 ], "step_params": [ -1.395, -0.392, 3.427, 8.228, 13.141, 35.572 ], "heli_params": [ -2.183, 3.102, 2.743, 20.360, -12.748, 38.704 ], "bp2_params": [ -0.200, -0.166, -0.488, -6.332, -5.563, 1.625 ], "groove_widths": [ 18.233, 15.481, 18.047, 15.519 ], "simple_Rise": 3.427, "simple_Twist": 41.996, "simple_hRise": 2.878, "simple_hTwist": 44.645 }, { "index": 40, "nt1": "///A/2139", "nt2": "///A/2208", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.200, -0.166, -0.488, -6.332, -5.563, 1.625 ], "step_params": [ 0.062, -1.330, 3.048, -0.038, 7.562, 31.688 ], "heli_params": [ -3.542, -0.116, 2.668, 13.608, 0.068, 32.555 ], "bp2_params": [ -0.107, -0.226, -0.180, 2.833, 4.730, -0.626 ], "groove_widths": [ 16.986, null, 17.091, null ], "simple_Rise": 3.048, "simple_Twist": 31.296, "simple_hRise": 2.662, "simple_hTwist": 32.174 }, { "index": 41, "nt1": "///A/2149", "nt2": "///A/2207", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.107, -0.226, -0.180, 2.833, 4.730, -0.626 ], "step_params": [ -2.149, -1.943, 2.971, -2.970, 11.826, 33.104 ], "heli_params": [ -4.686, 3.181, 2.340, 19.933, 5.006, 35.219 ], "bp2_params": [ -0.090, -0.203, -0.455, 11.352, 10.659, -2.120 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.971, "simple_Twist": 33.178, "simple_hRise": 2.341, "simple_hTwist": 35.288 }, { "index": 42, "nt1": "///A/2150", "nt2": "///A/2206", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.090, -0.203, -0.455, 11.352, 10.659, -2.120 ], "step_params": [ 0.055, 0.092, 2.330, 28.112, 14.549, 32.940 ], "heli_params": [ -0.837, 1.776, 1.774, 20.682, -39.962, 45.378 ], "bp2_params": [ 0.882, 0.096, -3.100, 77.881, 15.956, 7.679 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.330, "simple_Twist": 23.001, "simple_hRise": 1.466, "simple_hTwist": 38.955 }, { "index": 43, "nt1": "///A/2151", "nt2": "///A/2205", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 47, "num_stems": 1, "strand1": "GCCG", "strand2": "CGGA", "bp_type": "|||.", "helix_form": "AA.", "helical_rise": 2.420, "helical_rise_std": 0.163, "helical_radius": 8.969, "helical_radius_std": 1.428, "helical_axis": [ -0.070, 0.428, -0.901 ], "point1": [ 185.756, 229.262, 198.401 ], "point2": [ 185.255, 232.317, 191.973 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/1400", "nt2": "///A/1409", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.126, -0.241, -0.964, -10.640, -0.903, -2.567 ], "step_params": [ -0.376, -1.631, 3.076, -6.671, 2.597, 32.166 ], "heli_params": [ -3.291, -0.398, 2.956, 4.617, 11.857, 32.933 ], "bp2_params": [ 0.166, -0.169, -0.304, -2.900, 6.282, -0.347 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.076, "simple_Twist": 30.432, "simple_hRise": 2.945, "simple_hTwist": 31.243 }, { "index": 2, "nt1": "///A/1401", "nt2": "///A/1408", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.166, -0.169, -0.304, -2.900, 6.282, -0.347 ], "step_params": [ 0.829, -1.909, 3.239, -0.202, 13.501, 35.120 ], "heli_params": [ -4.530, -1.311, 2.367, 21.421, 0.321, 37.550 ], "bp2_params": [ 0.143, -0.135, 0.332, -2.471, -6.720, 0.163 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.239, "simple_Twist": 35.041, "simple_hRise": 2.365, "simple_hTwist": 37.476 }, { "index": 3, "nt1": "///A/1402", "nt2": "///A/1407", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.143, -0.135, 0.332, -2.471, -6.720, 0.163 ], "step_params": [ -3.902, -1.161, 2.947, -0.653, -8.688, 57.230 ], "heli_params": [ -0.767, 4.002, 3.119, -9.013, 0.677, 57.834 ], "bp2_params": [ 8.180, -5.056, -0.602, 17.993, 0.129, -37.568 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.947, "simple_Twist": 7.008, "simple_hRise": 2.979, "simple_hTwist": 11.178 }, { "index": 4, "nt1": "///A/1403", "nt2": "///A/1406", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 48, "num_stems": 4, "strand1": "ACCUGUACCACCUCUCACC", "strand2": "UGGACAUGGUGGAGAGUGG", "bp_type": ".||||||||||||||||||", "helix_form": "xAAA.x.xAAAAxAAAAA", "helical_rise": 2.915, "helical_rise_std": 0.516, "helical_radius": 9.742, "helical_radius_std": 2.321, "helical_axis": [ 0.349, 0.919, 0.182 ], "point1": [ 174.395, 202.985, 249.855 ], "point2": [ 192.730, 251.245, 259.418 ], "num_pairs": 19, "pairs": [ { "index": 1, "nt1": "///A/1434", "nt2": "///A/1429", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -3.947, -1.880, 0.366, -3.789, -3.022, -93.480 ], "step_params": [ 2.802, -1.599, 3.251, 13.214, 0.270, 78.307 ], "heli_params": [ -1.262, -1.819, 3.607, 0.212, -10.395, 79.238 ], "bp2_params": [ 0.200, -0.151, -0.381, 13.013, -9.670, -1.234 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.251, "simple_Twist": 53.714, "simple_hRise": 3.784, "simple_hTwist": 55.199 }, { "index": 2, "nt1": "///A/1437", "nt2": "///A/1428", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.200, -0.151, -0.381, 13.013, -9.670, -1.234 ], "step_params": [ -0.075, -1.408, 3.197, 1.832, 10.940, 38.474 ], "heli_params": [ -3.217, 0.303, 2.707, 16.196, -2.712, 39.982 ], "bp2_params": [ 0.159, -0.166, -0.565, 10.146, -1.261, -0.605 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.197, "simple_Twist": 38.681, "simple_hRise": 2.710, "simple_hTwist": 40.181 }, { "index": 3, "nt1": "///A/1438", "nt2": "///A/1427", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.159, -0.166, -0.565, 10.146, -1.261, -0.605 ], "step_params": [ -0.660, -1.427, 3.275, -3.113, 18.538, 33.160 ], "heli_params": [ -4.336, 0.653, 2.247, 29.701, 4.987, 37.987 ], "bp2_params": [ -0.071, -0.085, -0.094, 6.595, 12.850, -0.418 ], "groove_widths": [ 17.987, null, 15.506, null ], "simple_Rise": 3.275, "simple_Twist": 34.017, "simple_hRise": 2.277, "simple_hTwist": 38.731 }, { "index": 4, "nt1": "///A/1439", "nt2": "///A/1426", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.071, -0.085, -0.094, 6.595, 12.850, -0.418 ], "step_params": [ 0.442, -1.330, 3.457, 5.913, 7.838, 27.777 ], "heli_params": [ -4.326, 0.419, 3.006, 15.717, -11.857, 29.429 ], "bp2_params": [ -0.181, -0.266, -0.990, 6.905, -2.411, 0.578 ], "groove_widths": [ 18.382, 16.814, 20.707, 12.263 ], "simple_Rise": 3.457, "simple_Twist": 28.564, "simple_hRise": 3.023, "simple_hTwist": 30.171 }, { "index": 5, "nt1": "///A/1440", "nt2": "///A/1425", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.181, -0.266, -0.990, 6.905, -2.411, 0.578 ], "step_params": [ 0.696, 0.198, 3.182, 13.121, 0.582, 28.987 ], "heli_params": [ 0.253, 1.188, 3.195, 1.095, -24.677, 31.766 ], "bp2_params": [ -0.341, -0.523, -1.944, 18.502, -5.808, -2.049 ], "groove_widths": [ 17.821, 16.139, 20.203, 11.120 ], "simple_Rise": 3.182, "simple_Twist": 30.108, "simple_hRise": 3.204, "simple_hTwist": 32.787 }, { "index": 6, "nt1": "///A/1441", "nt2": "///A/1424", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.341, -0.523, -1.944, 18.502, -5.808, -2.049 ], "step_params": [ 0.905, -3.801, 4.317, -8.886, 11.507, 20.466 ], "heli_params": [ -12.105, -4.669, 1.491, 28.239, 21.808, 25.059 ], "bp2_params": [ 0.185, 0.724, 0.299, -5.828, 11.816, -1.368 ], "groove_widths": [ 15.575, 13.102, 18.172, 17.204 ], "simple_Rise": 4.317, "simple_Twist": 17.467, "simple_hRise": 1.068, "simple_hTwist": 22.690 }, { "index": 7, "nt1": "///A/1442", "nt2": "///A/1383", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.185, 0.724, 0.299, -5.828, 11.816, -1.368 ], "step_params": [ 0.876, -1.444, 3.116, -1.692, 5.000, 39.793 ], "heli_params": [ -2.629, -1.454, 2.883, 7.307, 2.473, 40.128 ], "bp2_params": [ 0.227, -0.173, 0.463, 0.848, 7.336, 0.729 ], "groove_widths": [ 12.969, 9.874, 23.232, 23.174 ], "simple_Rise": 3.116, "simple_Twist": 39.841, "simple_hRise": 2.883, "simple_hTwist": 40.175 }, { "index": 8, "nt1": "///A/1443", "nt2": "///A/1382", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.227, -0.173, 0.463, 0.848, 7.336, 0.729 ], "step_params": [ -1.337, -2.531, 3.005, 0.930, 12.899, 23.909 ], "heli_params": [ -7.741, 3.019, 1.422, 28.611, -2.063, 27.137 ], "bp2_params": [ 0.180, -0.111, 0.120, -0.887, -7.300, 0.967 ], "groove_widths": [ 14.545, 12.978, 20.296, 19.599 ], "simple_Rise": 3.005, "simple_Twist": 23.565, "simple_hRise": 1.399, "simple_hTwist": 26.836 }, { "index": 9, "nt1": "///A/1444", "nt2": "///A/1642", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.180, -0.111, 0.120, -0.887, -7.300, 0.967 ], "step_params": [ -0.723, -1.510, 3.345, -10.253, 2.706, 29.608 ], "heli_params": [ -3.317, -0.667, 3.261, 5.095, 19.300, 31.409 ], "bp2_params": [ 0.038, -0.163, 0.384, 0.355, 0.136, 0.200 ], "groove_widths": [ 18.855, 17.718, 17.081, 15.768 ], "simple_Rise": 3.345, "simple_Twist": 30.548, "simple_hRise": 3.269, "simple_hTwist": 32.295 }, { "index": 10, "nt1": "///A/1445", "nt2": "///A/1641", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.038, -0.163, 0.384, 0.355, 0.136, 0.200 ], "step_params": [ 0.596, -1.776, 3.104, -2.140, 1.313, 35.818 ], "heli_params": [ -3.057, -1.252, 3.000, 2.132, 3.474, 35.903 ], "bp2_params": [ 0.190, -0.242, 0.668, 2.421, -1.410, 0.948 ], "groove_widths": [ 18.716, 16.717, 16.870, 13.816 ], "simple_Rise": 3.104, "simple_Twist": 35.127, "simple_hRise": 2.998, "simple_hTwist": 35.214 }, { "index": 11, "nt1": "///A/1446", "nt2": "///A/1640", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.190, -0.242, 0.668, 2.421, -1.410, 0.948 ], "step_params": [ -0.528, -2.177, 3.093, -0.599, 3.384, 30.897 ], "heli_params": [ -4.654, 0.881, 2.853, 6.326, 1.120, 31.083 ], "bp2_params": [ 0.189, -0.196, 0.615, 1.742, 6.326, 2.265 ], "groove_widths": [ 17.428, 15.013, 16.026, 12.484 ], "simple_Rise": 3.093, "simple_Twist": 30.599, "simple_hRise": 2.851, "simple_hTwist": 30.787 }, { "index": 12, "nt1": "///A/1447", "nt2": "///A/1639", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.189, -0.196, 0.615, 1.742, 6.326, 2.265 ], "step_params": [ -0.338, -1.890, 3.147, 1.029, 5.632, 29.073 ], "heli_params": [ -4.776, 0.858, 2.727, 11.084, -2.025, 29.619 ], "bp2_params": [ -0.007, -0.276, 0.820, 8.535, 8.061, -3.038 ], "groove_widths": [ 17.356, 14.839, 14.762, 12.348 ], "simple_Rise": 3.147, "simple_Twist": 30.305, "simple_hRise": 2.746, "simple_hTwist": 30.829 }, { "index": 13, "nt1": "///A/1448", "nt2": "///A/1638", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.007, -0.276, 0.820, 8.535, 8.061, -3.038 ], "step_params": [ -1.528, -1.235, 3.082, 1.414, -0.341, 53.951 ], "heli_params": [ -1.341, 1.765, 3.051, -0.376, -1.558, 53.969 ], "bp2_params": [ 0.098, -0.164, 0.304, 4.384, -3.344, 1.441 ], "groove_widths": [ 16.289, 14.388, 14.448, 12.625 ], "simple_Rise": 3.082, "simple_Twist": 52.905, "simple_hRise": 3.051, "simple_hTwist": 52.923 }, { "index": 14, "nt1": "///A/1450", "nt2": "///A/1637", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.098, -0.164, 0.304, 4.384, -3.344, 1.441 ], "step_params": [ -0.393, -2.220, 2.999, 1.601, 4.800, 33.442 ], "heli_params": [ -4.490, 0.899, 2.643, 8.282, -2.762, 33.812 ], "bp2_params": [ 0.011, -0.220, -0.179, 4.633, 3.304, 5.751 ], "groove_widths": [ 16.409, 14.559, 13.399, 11.191 ], "simple_Rise": 2.999, "simple_Twist": 34.546, "simple_hRise": 2.656, "simple_hTwist": 34.903 }, { "index": 15, "nt1": "///A/1451", "nt2": "///A/1636", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.011, -0.220, -0.179, 4.633, 3.304, 5.751 ], "step_params": [ -0.134, -1.866, 3.445, 3.090, 3.095, 28.149 ], "heli_params": [ -4.516, 0.993, 3.193, 6.315, -6.305, 28.480 ], "bp2_params": [ 0.183, -0.176, 0.074, 3.345, -1.226, -0.626 ], "groove_widths": [ 16.941, 15.318, 17.849, 12.887 ], "simple_Rise": 3.445, "simple_Twist": 26.984, "simple_hRise": 3.180, "simple_hTwist": 27.330 }, { "index": 16, "nt1": "///A/1452", "nt2": "///A/1635", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.183, -0.176, 0.074, 3.345, -1.226, -0.626 ], "step_params": [ 0.387, -1.737, 3.060, -0.010, 9.460, 32.769 ], "heli_params": [ -4.264, -0.661, 2.477, 16.347, 0.017, 34.072 ], "bp2_params": [ -0.010, -0.181, -0.121, -0.133, 2.679, 6.272 ], "groove_widths": [ 17.040, null, 17.291, null ], "simple_Rise": 3.060, "simple_Twist": 34.049, "simple_hRise": 2.503, "simple_hTwist": 35.302 }, { "index": 17, "nt1": "///A/1453", "nt2": "///A/1634", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.010, -0.181, -0.121, -0.133, 2.679, 6.272 ], "step_params": [ 0.661, -1.454, 3.243, 0.952, 2.785, 36.432 ], "heli_params": [ -2.694, -0.926, 3.143, 4.445, -1.519, 36.547 ], "bp2_params": [ 0.239, -0.147, 0.156, 2.361, 2.709, 0.868 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.243, "simple_Twist": 35.208, "simple_hRise": 3.139, "simple_hTwist": 35.327 }, { "index": 18, "nt1": "///A/1454", "nt2": "///A/1633", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.239, -0.147, 0.156, 2.361, 2.709, 0.868 ], "step_params": [ -0.277, -1.913, 2.797, 3.172, 4.329, 24.833 ], "heli_params": [ -5.349, 1.361, 2.381, 9.918, -7.268, 25.397 ], "bp2_params": [ 0.193, -0.143, -0.344, 12.025, 1.276, 1.572 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.797, "simple_Twist": 24.607, "simple_hRise": 2.377, "simple_hTwist": 25.177 }, { "index": 19, "nt1": "///A/1455", "nt2": "///A/1632", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 49, "num_stems": 2, "strand1": "GAGCAAGGGGGGAC", "strand2": "AGCGAUCUCCGAAA", "bp_type": "..||..||||....", "helix_form": "..A..x..A....", "helical_rise": 3.375, "helical_rise_std": 0.820, "helical_radius": 7.763, "helical_radius_std": 1.860, "helical_axis": [ 0.264, -0.926, -0.270 ], "point1": [ 196.883, 259.003, 241.414 ], "point2": [ 208.568, 218.004, 229.438 ], "num_pairs": 14, "pairs": [ { "index": 1, "nt1": "///A/1460", "nt2": "///A/1631", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 5.730, -4.894, -1.918, -4.151, -1.831, -4.127 ], "step_params": [ 0.582, -0.501, 3.371, -20.725, 22.960, -21.425 ], "heli_params": [ -2.769, -2.297, 2.572, -41.647, -37.593, -37.477 ], "bp2_params": [ -6.875, -3.729, -0.125, -0.122, -3.220, 0.409 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.371, "simple_Twist": 66.684, "simple_hRise": 2.839, "simple_hTwist": 72.749 }, { "index": 2, "nt1": "///A/1461", "nt2": "///A/1630", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.875, -3.729, -0.125, -0.122, -3.220, 0.409 ], "step_params": [ 0.685, -0.763, 3.623, 0.706, 2.254, 55.616 ], "heli_params": [ -0.962, -0.688, 3.600, 2.415, -0.756, 55.662 ], "bp2_params": [ -0.181, -0.251, -0.749, -3.843, -3.083, 1.530 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.623, "simple_Twist": 12.165, "simple_hRise": 3.458, "simple_hTwist": 12.392 }, { "index": 3, "nt1": "///A/1462", "nt2": "///A/1629", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.181, -0.251, -0.749, -3.843, -3.083, 1.530 ], "step_params": [ -0.448, -2.049, 3.098, -3.411, 2.305, 33.498 ], "heli_params": [ -3.879, 0.256, 2.984, 3.981, 5.891, 33.743 ], "bp2_params": [ 0.166, -0.175, -0.466, -4.008, -2.828, -0.323 ], "groove_widths": [ 15.954, null, 13.718, null ], "simple_Rise": 3.098, "simple_Twist": 31.314, "simple_hRise": 2.974, "simple_hTwist": 31.576 }, { "index": 4, "nt1": "///A/1463", "nt2": "///A/1628", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.166, -0.175, -0.466, -4.008, -2.828, -0.323 ], "step_params": [ -1.094, -1.087, 3.127, -4.127, 4.810, 59.082 ], "heli_params": [ -1.329, 0.905, 3.101, 4.863, 4.172, 59.390 ], "bp2_params": [ 6.611, -3.854, 0.223, -2.913, -2.388, -18.651 ], "groove_widths": [ 17.037, 15.251, 13.499, 13.491 ], "simple_Rise": 3.127, "simple_Twist": 18.587, "simple_hRise": 2.926, "simple_hTwist": 19.629 }, { "index": 5, "nt1": "///A/1464", "nt2": "///A/1627", "bp": "A-A", "name": "~Sheared", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.611, -3.854, 0.223, -2.913, -2.388, -18.651 ], "step_params": [ -5.254, -1.193, 3.026, 3.525, 5.785, -4.436 ], "heli_params": [ -17.115, -21.641, 4.797, -48.523, 29.563, -8.096 ], "bp2_params": [ -3.869, -1.620, -0.547, 0.137, -1.242, -99.552 ], "groove_widths": [ 17.600, 15.952, 11.159, 11.029 ], "simple_Rise": 3.026, "simple_Twist": 60.211, "simple_hRise": 2.630, "simple_hTwist": 60.556 }, { "index": 6, "nt1": "///A/1465", "nt2": "///A/1626", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -3.869, -1.620, -0.547, 0.137, -1.242, -99.552 ], "step_params": [ 1.923, -0.404, 3.772, -6.728, -0.082, 69.723 ], "heli_params": [ -0.349, -1.946, 3.598, -0.072, 5.871, 70.006 ], "bp2_params": [ -0.199, -0.309, -0.998, -3.319, -1.565, 0.665 ], "groove_widths": [ 17.667, 16.665, 10.457, 10.457 ], "simple_Rise": 3.772, "simple_Twist": 47.554, "simple_hRise": 3.486, "simple_hTwist": 48.000 }, { "index": 7, "nt1": "///A/1467", "nt2": "///A/1625", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.199, -0.309, -0.998, -3.319, -1.565, 0.665 ], "step_params": [ 0.039, -2.226, 3.389, -7.232, 6.363, 26.983 ], "heli_params": [ -5.886, -1.651, 2.703, 13.116, 14.908, 28.621 ], "bp2_params": [ -1.821, -0.342, -0.449, -10.406, 5.905, 1.408 ], "groove_widths": [ 17.513, 16.118, 8.901, 8.816 ], "simple_Rise": 3.389, "simple_Twist": 36.272, "simple_hRise": 2.910, "simple_hTwist": 37.488 }, { "index": 8, "nt1": "///A/1468", "nt2": "///A/1624", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.821, -0.342, -0.449, -10.406, 5.905, 1.408 ], "step_params": [ 0.185, -1.241, 2.941, -3.441, 3.714, 37.367 ], "heli_params": [ -2.344, -0.678, 2.782, 5.765, 5.341, 37.697 ], "bp2_params": [ -0.193, -0.130, 0.103, 0.117, 4.968, -0.242 ], "groove_widths": [ 17.115, 15.505, 14.317, 9.671 ], "simple_Rise": 2.941, "simple_Twist": 28.322, "simple_hRise": 2.718, "simple_hTwist": 28.762 }, { "index": 9, "nt1": "///A/1469", "nt2": "///A/1623", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.193, -0.130, 0.103, 0.117, 4.968, -0.242 ], "step_params": [ 0.124, -1.850, 2.906, 1.130, 5.987, 34.304 ], "heli_params": [ -3.857, -0.063, 2.559, 10.051, -1.897, 34.825 ], "bp2_params": [ -0.203, -0.145, -0.126, 7.759, 5.363, 0.032 ], "groove_widths": [ 17.158, 15.498, 12.985, 9.310 ], "simple_Rise": 2.906, "simple_Twist": 34.256, "simple_hRise": 2.559, "simple_hTwist": 34.778 }, { "index": 10, "nt1": "///A/1470", "nt2": "///A/1622", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.203, -0.145, -0.126, 7.759, 5.363, 0.032 ], "step_params": [ -0.322, -1.000, 3.718, 13.644, 2.553, 62.025 ], "heli_params": [ -1.078, 0.982, 3.547, 2.445, -13.066, 63.408 ], "bp2_params": [ 6.780, -1.596, -1.048, 8.283, -9.051, -3.677 ], "groove_widths": [ 16.912, 12.950, 11.749, 11.010 ], "simple_Rise": 3.718, "simple_Twist": 25.031, "simple_hRise": 3.026, "simple_hTwist": 28.568 }, { "index": 11, "nt1": "///A/1471", "nt2": "///A/1621", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.780, -1.596, -1.048, 8.283, -9.051, -3.677 ], "step_params": [ 0.476, -0.874, 3.285, 10.824, 0.854, 37.283 ], "heli_params": [ -1.423, 0.638, 3.272, 1.302, -16.506, 38.778 ], "bp2_params": [ 6.439, -4.173, -1.162, 8.553, -9.833, -6.409 ], "groove_widths": [ 18.996, null, 12.028, null ], "simple_Rise": 3.285, "simple_Twist": 29.877, "simple_hRise": 3.231, "simple_hTwist": 31.746 }, { "index": 12, "nt1": "///A/1472", "nt2": "///A/1620", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.439, -4.173, -1.162, 8.553, -9.833, -6.409 ], "step_params": [ 1.488, 0.229, 3.361, 5.790, -3.038, -64.898 ], "heli_params": [ -0.085, 1.624, 3.239, 2.823, 5.381, -65.191 ], "bp2_params": [ -5.495, 5.097, 1.877, -16.559, 0.279, -164.287 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.361, "simple_Twist": 5.472, "simple_hRise": 3.087, "simple_hTwist": 8.524 }, { "index": 13, "nt1": "///A/1473", "nt2": "///A/1619", "bp": "A+A", "name": "--", "Saenger": "02-II", "LW": "tHH", "DSSR": "tM+M", "bp1_params": [ -5.495, 5.097, 1.877, -16.559, 0.279, -164.287 ], "step_params": [ -1.716, 0.895, 3.605, 4.527, 13.608, 67.462 ], "heli_params": [ 0.232, 1.706, 3.600, 12.112, -4.030, 68.792 ], "bp2_params": [ 4.414, 1.932, -0.798, 30.333, 7.166, -133.048 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.605, "simple_Twist": 16.807, "simple_hRise": 2.952, "simple_hTwist": 22.060 }, { "index": 14, "nt1": "///A/1474", "nt2": "///A/1618", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M" } ] }, { "index": 50, "num_stems": 4, "strand1": "UUCCGCGUUCCUGAUCCAACUGCC", "strand2": "GGCGCGAAUGGGAUAGGAGGACGG", "bp_type": ".|.|||.|.|||..|||..|||||", "helix_form": "x..AA.x..A...xA..xAAAAx", "helical_rise": 3.125, "helical_rise_std": 0.538, "helical_radius": 9.274, "helical_radius_std": 2.461, "helical_axis": [ 0.518, 0.522, -0.677 ], "point1": [ 189.096, 175.635, 278.527 ], "point2": [ 226.419, 213.274, 229.737 ], "num_pairs": 24, "pairs": [ { "index": 1, "nt1": "///A/1505", "nt2": "///A/1497", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.295, -0.194, -0.702, -35.097, 17.247, -1.797 ], "step_params": [ 0.682, -1.040, 2.707, -6.256, 5.925, 40.474 ], "heli_params": [ -1.976, -1.497, 2.411, 8.448, 8.920, 41.344 ], "bp2_params": [ 1.557, -0.435, -0.550, -1.694, 12.901, -2.564 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.707, "simple_Twist": 23.436, "simple_hRise": 2.133, "simple_hTwist": 24.949 }, { "index": 2, "nt1": "///A/1507", "nt2": "///A/1496", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.557, -0.435, -0.550, -1.694, 12.901, -2.564 ], "step_params": [ -1.499, -1.407, 2.906, 0.948, 5.270, 34.548 ], "heli_params": [ -3.020, 2.618, 2.628, 8.808, -1.584, 34.948 ], "bp2_params": [ 2.223, -1.855, -0.212, 8.936, 6.795, -13.406 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.906, "simple_Twist": 29.761, "simple_hRise": 2.576, "simple_hTwist": 30.228 }, { "index": 3, "nt1": "///A/1508", "nt2": "///A/1495", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.223, -1.855, -0.212, 8.936, 6.795, -13.406 ], "step_params": [ 0.076, -2.601, 3.376, 4.889, 6.425, 17.674 ], "heli_params": [ -10.572, 1.953, 2.241, 19.635, -14.941, 19.417 ], "bp2_params": [ 0.111, -0.183, -0.569, 7.799, 1.490, 0.528 ], "groove_widths": [ 17.185, null, 19.736, null ], "simple_Rise": 3.376, "simple_Twist": 29.969, "simple_hRise": 2.751, "simple_hTwist": 31.013 }, { "index": 4, "nt1": "///A/1509", "nt2": "///A/1494", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.111, -0.183, -0.569, 7.799, 1.490, 0.528 ], "step_params": [ -0.145, -1.269, 3.271, -3.251, 25.611, 31.779 ], "heli_params": [ -4.324, -0.109, 1.807, 39.615, 5.028, 40.732 ], "bp2_params": [ -0.154, -0.177, -0.056, -3.679, 2.125, 1.639 ], "groove_widths": [ 18.069, 17.092, 16.185, 13.518 ], "simple_Rise": 3.271, "simple_Twist": 33.418, "simple_hRise": 1.883, "simple_hTwist": 42.002 }, { "index": 5, "nt1": "///A/1510", "nt2": "///A/1493", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.154, -0.177, -0.056, -3.679, 2.125, 1.639 ], "step_params": [ -0.425, -2.135, 2.916, 0.816, 2.783, 31.530 ], "heli_params": [ -4.356, 0.910, 2.711, 5.108, -1.499, 31.660 ], "bp2_params": [ 0.113, -0.161, -0.279, 8.383, 1.842, 1.080 ], "groove_widths": [ 17.213, 15.172, 15.691, 12.467 ], "simple_Rise": 2.916, "simple_Twist": 29.665, "simple_hRise": 2.696, "simple_hTwist": 29.804 }, { "index": 6, "nt1": "///A/1511", "nt2": "///A/1492", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.113, -0.161, -0.279, 8.383, 1.842, 1.080 ], "step_params": [ -1.041, -1.194, 3.671, 20.325, 12.915, 88.745 ], "heli_params": [ -1.110, 1.160, 3.274, 9.097, -14.316, 91.293 ], "bp2_params": [ 1.618, 0.125, -1.266, -36.193, -8.123, -115.164 ], "groove_widths": [ 16.469, 13.691, 14.663, 12.838 ], "simple_Rise": 3.671, "simple_Twist": 21.057, "simple_hRise": 1.308, "simple_hTwist": 31.886 }, { "index": 7, "nt1": "///A/1512", "nt2": "///A/1491", "bp": "G+A", "name": "--", "Saenger": "--", "LW": ".WW", "DSSR": ".W+W", "bp1_params": [ 1.618, 0.125, -1.266, -36.193, -8.123, -115.164 ], "step_params": [ -2.391, 1.898, 3.918, -13.200, 15.461, -11.341 ], "heli_params": [ -8.272, -8.974, -0.690, -46.500, -39.700, -23.250 ], "bp2_params": [ 0.045, -0.264, -0.720, -18.290, 1.975, -1.808 ], "groove_widths": [ 17.122, 15.233, 11.549, 11.130 ], "simple_Rise": 3.918, "simple_Twist": 57.220, "simple_hRise": 4.650, "simple_hTwist": 60.435 }, { "index": 8, "nt1": "///A/1595", "nt2": "///A/1490", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.045, -0.264, -0.720, -18.290, 1.975, -1.808 ], "step_params": [ -1.131, -1.231, 3.195, -5.947, 2.562, 48.673 ], "heli_params": [ -1.673, 0.919, 3.238, 3.093, 7.178, 49.076 ], "bp2_params": [ 2.416, -1.717, -0.124, -5.497, 6.511, -31.550 ], "groove_widths": [ 17.169, 15.586, 10.497, 10.036 ], "simple_Rise": 3.195, "simple_Twist": 35.265, "simple_hRise": 3.242, "simple_hTwist": 35.836 }, { "index": 9, "nt1": "///A/1596", "nt2": "///A/1489", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.416, -1.717, -0.124, -5.497, 6.511, -31.550 ], "step_params": [ 1.741, -2.925, 3.197, -4.882, 0.921, 26.579 ], "heli_params": [ -6.472, -4.859, 2.738, 1.981, 10.502, 27.031 ], "bp2_params": [ 0.170, -0.168, 0.024, -0.939, 5.592, 0.299 ], "groove_widths": [ 16.744, 14.860, 18.388, 15.474 ], "simple_Rise": 3.197, "simple_Twist": 38.967, "simple_hRise": 2.900, "simple_hTwist": 39.270 }, { "index": 10, "nt1": "///A/1597", "nt2": "///A/1488", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.170, -0.168, 0.024, -0.939, 5.592, 0.299 ], "step_params": [ 0.335, -2.250, 3.264, -3.812, 3.058, 33.008 ], "heli_params": [ -4.408, -1.193, 2.993, 5.345, 6.663, 33.358 ], "bp2_params": [ 0.205, -0.135, 0.197, 0.321, 5.290, 0.677 ], "groove_widths": [ 16.790, 14.750, 17.323, 16.221 ], "simple_Rise": 3.264, "simple_Twist": 33.081, "simple_hRise": 2.994, "simple_hTwist": 33.430 }, { "index": 11, "nt1": "///A/1598", "nt2": "///A/1487", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.205, -0.135, 0.197, 0.321, 5.290, 0.677 ], "step_params": [ -0.306, -1.881, 3.056, 0.675, 4.479, 44.349 ], "heli_params": [ -2.853, 0.459, 2.858, 5.915, -0.892, 44.568 ], "bp2_params": [ 2.677, -0.634, 0.302, 1.334, 3.765, -6.333 ], "groove_widths": [ 17.019, 15.618, 13.868, 12.699 ], "simple_Rise": 3.056, "simple_Twist": 31.266, "simple_hRise": 2.759, "simple_hTwist": 31.584 }, { "index": 12, "nt1": "///A/1599", "nt2": "///A/1486", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.677, -0.634, 0.302, 1.334, 3.765, -6.333 ], "step_params": [ 0.818, -0.418, 3.280, 4.198, 2.232, 45.973 ], "heli_params": [ -0.725, -0.680, 3.315, 2.849, -5.358, 46.205 ], "bp2_params": [ -6.496, 0.063, 0.021, -3.613, 4.712, -149.496 ], "groove_widths": [ 17.574, 15.808, 12.586, 12.243 ], "simple_Rise": 3.280, "simple_Twist": 20.001, "simple_hRise": 3.313, "simple_hTwist": 20.552 }, { "index": 13, "nt1": "///A/1600", "nt2": "///A/1485", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -6.496, 0.063, 0.021, -3.613, 4.712, -149.496 ], "step_params": [ -5.992, -1.158, 3.854, 1.515, -8.684, -12.619 ], "heli_params": [ 12.348, -20.987, 3.101, 34.523, 6.021, -15.382 ], "bp2_params": [ -4.432, -2.513, 0.413, -2.496, -2.925, -91.326 ], "groove_widths": [ 17.155, 15.405, 12.655, 12.655 ], "simple_Rise": 3.854, "simple_Twist": 55.061, "simple_hRise": 3.829, "simple_hTwist": 55.708 }, { "index": 14, "nt1": "///A/1601", "nt2": "///A/1484", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.432, -2.513, 0.413, -2.496, -2.925, -91.326 ], "step_params": [ 2.464, -2.127, 3.173, 7.327, 5.212, 80.507 ], "heli_params": [ -1.771, -1.713, 3.231, 4.022, -5.653, 80.922 ], "bp2_params": [ -0.133, -0.071, -0.579, 9.307, 0.696, 0.888 ], "groove_widths": [ 16.427, 15.400, 11.593, 11.560 ], "simple_Rise": 3.173, "simple_Twist": 53.316, "simple_hRise": 3.255, "simple_hTwist": 54.014 }, { "index": 15, "nt1": "///A/1603", "nt2": "///A/1483", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.133, -0.071, -0.579, 9.307, 0.696, 0.888 ], "step_params": [ -0.447, -1.278, 3.422, 2.874, 2.355, 31.146 ], "heli_params": [ -2.818, 1.382, 3.265, 4.367, -5.329, 31.362 ], "bp2_params": [ 0.166, -0.300, -1.174, 13.280, -2.669, 1.829 ], "groove_widths": [ 16.948, 14.616, 10.989, 10.949 ], "simple_Rise": 3.422, "simple_Twist": 29.813, "simple_hRise": 3.257, "simple_hTwist": 30.039 }, { "index": 16, "nt1": "///A/1604", "nt2": "///A/1482", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.166, -0.300, -1.174, 13.280, -2.669, 1.829 ], "step_params": [ 0.592, -1.185, 3.643, 4.838, 2.948, 33.169 ], "heli_params": [ -2.583, -0.145, 3.576, 5.117, -8.399, 33.636 ], "bp2_params": [ 0.300, -0.164, -0.540, 13.873, -11.763, 1.290 ], "groove_widths": [ 19.579, 16.971, 16.443, 12.899 ], "simple_Rise": 3.643, "simple_Twist": 33.206, "simple_hRise": 3.576, "simple_hTwist": 33.673 }, { "index": 17, "nt1": "///A/1605", "nt2": "///A/1481", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.300, -0.164, -0.540, 13.873, -11.763, 1.290 ], "step_params": [ 1.907, -0.146, 3.077, 0.982, 5.208, -7.042 ], "heli_params": [ -10.605, 14.594, 2.333, -36.364, 6.859, -8.811 ], "bp2_params": [ 1.514, 2.234, 0.083, -22.086, -10.947, -58.003 ], "groove_widths": [ 20.677, 19.764, 17.464, 15.789 ], "simple_Rise": 3.077, "simple_Twist": 0.691, "simple_hRise": 0.606, "simple_hTwist": 5.345 }, { "index": 18, "nt1": "///A/1606", "nt2": "///A/1480", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cW.", "DSSR": "cW-.", "bp1_params": [ 1.514, 2.234, 0.083, -22.086, -10.947, -58.003 ], "step_params": [ 0.847, -0.920, 3.465, -1.774, 12.674, 44.943 ], "heli_params": [ -2.245, -1.221, 3.078, 16.194, 2.267, 46.638 ], "bp2_params": [ 0.919, 1.233, 0.579, 5.027, -1.745, -29.179 ], "groove_widths": [ 18.629, 18.464, 18.887, 17.566 ], "simple_Rise": 3.465, "simple_Twist": 33.899, "simple_hRise": 2.901, "simple_hTwist": 36.167 }, { "index": 19, "nt1": "///A/1608", "nt2": "///A/1479", "bp": "A-G", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.919, 1.233, 0.579, 5.027, -1.745, -29.179 ], "step_params": [ 1.216, -1.544, 3.161, -1.608, 0.049, 30.885 ], "heli_params": [ -2.904, -2.577, 3.092, 0.092, 3.016, 30.926 ], "bp2_params": [ 0.196, -0.189, 0.653, 4.947, -4.417, -2.501 ], "groove_widths": [ 17.577, 17.174, 19.272, 19.270 ], "simple_Rise": 3.161, "simple_Twist": 34.181, "simple_hRise": 3.100, "simple_hTwist": 34.217 }, { "index": 20, "nt1": "///A/1609", "nt2": "///A/1478", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.196, -0.189, 0.653, 4.947, -4.417, -2.501 ], "step_params": [ 0.160, -1.347, 3.188, 0.450, 2.226, 36.044 ], "heli_params": [ -2.475, -0.197, 3.104, 3.594, -0.726, 36.113 ], "bp2_params": [ -0.041, -0.240, 0.779, 3.176, -7.359, -5.002 ], "groove_widths": [ 17.116, 16.318, 12.204, 11.818 ], "simple_Rise": 3.188, "simple_Twist": 37.438, "simple_hRise": 3.107, "simple_hTwist": 37.504 }, { "index": 21, "nt1": "///A/1610", "nt2": "///A/1477", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.041, -0.240, 0.779, 3.176, -7.359, -5.002 ], "step_params": [ 0.639, -1.580, 3.120, 0.770, 7.264, 33.470 ], "heli_params": [ -3.721, -0.975, 2.741, 12.430, -1.318, 34.236 ], "bp2_params": [ -0.170, -0.197, 0.728, -3.735, 0.078, 0.469 ], "groove_widths": [ 16.949, null, 12.519, null ], "simple_Rise": 3.120, "simple_Twist": 34.032, "simple_hRise": 2.748, "simple_hTwist": 34.785 }, { "index": 22, "nt1": "///A/1611", "nt2": "///A/1476", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.170, -0.197, 0.728, -3.735, 0.078, 0.469 ], "step_params": [ 0.073, -1.480, 3.252, 1.383, 4.365, 39.112 ], "heli_params": [ -2.699, 0.051, 3.077, 6.493, -2.057, 39.369 ], "bp2_params": [ 0.189, -0.169, 0.558, -2.090, 4.331, -0.380 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.252, "simple_Twist": 37.155, "simple_hRise": 3.066, "simple_hTwist": 37.426 }, { "index": 23, "nt1": "///A/1612", "nt2": "///A/1475", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.189, -0.169, 0.558, -2.090, 4.331, -0.380 ], "step_params": [ -1.358, -1.081, 3.355, 4.426, 5.849, 13.459 ], "heli_params": [ -8.228, 8.253, 2.148, 22.869, -17.305, 15.320 ], "bp2_params": [ 0.199, -0.207, 0.815, 1.479, 2.607, 3.019 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.355, "simple_Twist": 13.127, "simple_hRise": 2.116, "simple_hTwist": 15.030 }, { "index": 24, "nt1": "///A/1613", "nt2": "///A/1616", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 51, "num_stems": 1, "strand1": "AGGC", "strand2": "UCCG", "bp_type": "||||", "helix_form": "AAA", "helical_rise": 2.404, "helical_rise_std": 0.130, "helical_radius": 9.446, "helical_radius_std": 0.996, "helical_axis": [ 0.908, 0.076, -0.412 ], "point1": [ 216.796, 219.966, 254.061 ], "point2": [ 223.197, 220.501, 251.157 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/1524", "nt2": "///A/1560", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.166, -0.189, 0.145, 2.172, 2.770, -0.501 ], "step_params": [ -0.221, -1.767, 3.348, -0.884, 3.076, 25.429 ], "heli_params": [ -4.849, 0.249, 3.121, 6.953, 1.997, 25.626 ], "bp2_params": [ -0.184, -0.172, -0.302, 0.217, 3.319, 1.395 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.348, "simple_Twist": 26.012, "simple_hRise": 3.127, "simple_hTwist": 26.205 }, { "index": 2, "nt1": "///A/1525", "nt2": "///A/1559", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.184, -0.172, -0.302, 0.217, 3.319, 1.395 ], "step_params": [ -0.045, -1.732, 3.037, -1.181, 5.015, 30.678 ], "heli_params": [ -4.082, -0.117, 2.726, 9.395, 2.213, 31.097 ], "bp2_params": [ -0.165, -0.188, -0.285, 0.751, 0.906, 0.583 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.037, "simple_Twist": 30.652, "simple_hRise": 2.726, "simple_hTwist": 31.072 }, { "index": 3, "nt1": "///A/1526", "nt2": "///A/1558", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.165, -0.188, -0.285, 0.751, 0.906, 0.583 ], "step_params": [ 0.033, -1.954, 3.302, 0.222, 2.525, 32.733 ], "heli_params": [ -3.885, -0.021, 3.146, 4.472, -0.394, 32.828 ], "bp2_params": [ 0.190, -0.158, -0.005, 0.391, 3.392, -0.679 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.302, "simple_Twist": 30.451, "simple_hRise": 3.133, "simple_hTwist": 30.554 }, { "index": 4, "nt1": "///A/1527", "nt2": "///A/1557", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 52, "num_stems": 2, "strand1": "GGGAAAGG", "strand2": "CCCUUUCC", "bp_type": "||||||||", "helix_form": ".AAAAxA", "helical_rise": 2.972, "helical_rise_std": 0.916, "helical_radius": 9.548, "helical_radius_std": 2.650, "helical_axis": [ -0.608, 0.747, -0.267 ], "point1": [ 230.767, 230.353, 239.995 ], "point2": [ 218.199, 245.796, 234.482 ], "num_pairs": 8, "pairs": [ { "index": 1, "nt1": "///A/1529", "nt2": "///A/1552", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.109, -0.468, -1.442, -14.799, -0.067, 1.065 ], "step_params": [ 0.011, -0.546, 2.917, -4.781, 5.874, 24.394 ], "heli_params": [ -2.698, -1.216, 2.664, 13.490, 10.980, 25.526 ], "bp2_params": [ -0.172, -0.404, -1.127, -1.359, 1.904, -2.797 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.917, "simple_Twist": 24.490, "simple_hRise": 2.665, "simple_hTwist": 25.617 }, { "index": 2, "nt1": "///A/1530", "nt2": "///A/1551", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.172, -0.404, -1.127, -1.359, 1.904, -2.797 ], "step_params": [ 0.619, -1.816, 3.311, -4.963, 6.398, 35.055 ], "heli_params": [ -3.810, -1.677, 2.835, 10.450, 8.107, 35.949 ], "bp2_params": [ -0.109, -0.157, -0.345, -8.226, 3.253, 0.465 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.311, "simple_Twist": 35.270, "simple_hRise": 2.839, "simple_hTwist": 36.159 }, { "index": 3, "nt1": "///A/1531", "nt2": "///A/1550", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.109, -0.157, -0.345, -8.226, 3.253, 0.465 ], "step_params": [ 0.393, -1.567, 2.953, 1.564, 8.402, 34.128 ], "heli_params": [ -3.661, -0.452, 2.523, 14.044, -2.614, 35.151 ], "bp2_params": [ 0.091, -0.174, -0.337, -0.648, 11.827, -3.605 ], "groove_widths": [ 17.286, null, 15.316, null ], "simple_Rise": 2.953, "simple_Twist": 32.548, "simple_hRise": 2.498, "simple_hTwist": 33.622 }, { "index": 4, "nt1": "///A/1532", "nt2": "///A/1549", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.091, -0.174, -0.337, -0.648, 11.827, -3.605 ], "step_params": [ -0.037, -1.680, 3.225, 3.712, 14.241, 35.532 ], "heli_params": [ -4.146, 0.471, 2.388, 22.198, -5.786, 38.369 ], "bp2_params": [ 0.099, -0.159, -0.719, -5.098, -0.384, -1.053 ], "groove_widths": [ 20.699, 15.052, 15.599, 12.146 ], "simple_Rise": 3.225, "simple_Twist": 35.571, "simple_hRise": 2.389, "simple_hTwist": 38.404 }, { "index": 5, "nt1": "///A/1533", "nt2": "///A/1548", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.099, -0.159, -0.719, -5.098, -0.384, -1.053 ], "step_params": [ 0.314, -1.470, 2.987, -4.522, -0.920, 28.879 ], "heli_params": [ -2.731, -1.517, 2.949, -1.829, 8.995, 29.237 ], "bp2_params": [ 0.027, -0.181, -0.330, 3.998, 1.421, 1.418 ], "groove_widths": [ 23.077, null, 12.316, null ], "simple_Rise": 2.987, "simple_Twist": 29.216, "simple_hRise": 2.950, "simple_hTwist": 29.571 }, { "index": 6, "nt1": "///A/1534", "nt2": "///A/1547", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.027, -0.181, -0.330, 3.998, 1.421, 1.418 ], "step_params": [ -2.669, -3.408, 6.930, 6.471, 12.396, 90.468 ], "heli_params": [ -2.879, 2.125, 6.370, 8.687, -4.535, 91.310 ], "bp2_params": [ -0.132, -0.199, 0.670, 6.079, 2.304, 1.752 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 6.930, "simple_Twist": 91.759, "simple_hRise": 6.383, "simple_hTwist": 92.582 }, { "index": 7, "nt1": "///A/1537", "nt2": "///A/1545", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.132, -0.199, 0.670, 6.079, 2.304, 1.752 ], "step_params": [ -0.134, -2.287, 3.055, 1.321, 1.691, 31.984 ], "heli_params": [ -4.420, 0.461, 2.926, 3.064, -2.394, 32.054 ], "bp2_params": [ -0.136, -0.150, 0.297, 4.951, -1.100, 0.115 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.055, "simple_Twist": 31.989, "simple_hRise": 2.926, "simple_hTwist": 32.059 }, { "index": 8, "nt1": "///A/1538", "nt2": "///A/1544", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 53, "num_stems": 2, "strand1": "AGCGUGAGGCGAGCG", "strand2": "UGACAACCUGAGCGA", "bp_type": "...||..|||..||.", "helix_form": "..xx..xAx.x.A.", "helical_rise": 3.316, "helical_rise_std": 1.377, "helical_radius": 8.520, "helical_radius_std": 2.390, "helical_axis": [ -0.699, -0.621, 0.353 ], "point1": [ 207.684, 215.506, 256.228 ], "point2": [ 175.284, 186.712, 272.588 ], "num_pairs": 15, "pairs": [ { "index": 1, "nt1": "///A/1562", "nt2": "///A/1522", "bp": "A+U", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "bp1_params": [ 0.088, 5.085, -0.536, -1.749, -8.819, 148.474 ], "step_params": [ -1.325, -2.087, 3.472, 3.417, -1.825, -70.036 ], "heli_params": [ 1.885, -1.025, 3.477, 1.589, 2.975, -70.130 ], "bp2_params": [ -1.381, 1.054, -0.262, 6.070, -1.204, -20.218 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.472, "simple_Twist": 24.343, "simple_hRise": 3.401, "simple_hTwist": 24.645 }, { "index": 2, "nt1": "///A/1563", "nt2": "///A/1521", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.381, 1.054, -0.262, 6.070, -1.204, -20.218 ], "step_params": [ -0.460, -1.673, 3.122, -2.588, 2.034, 45.826 ], "heli_params": [ -2.310, 0.378, 3.069, 2.608, 3.318, 45.938 ], "bp2_params": [ 1.684, -0.728, -0.217, 6.960, -6.012, -12.321 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.122, "simple_Twist": 30.278, "simple_hRise": 3.033, "simple_hTwist": 30.452 }, { "index": 3, "nt1": "///A/1564", "nt2": "///A/1520", "bp": "C-A", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.684, -0.728, -0.217, 6.960, -6.012, -12.321 ], "step_params": [ -1.232, -0.209, 5.028, 46.524, 19.838, 33.584 ], "heli_params": [ -1.616, 4.531, 1.908, 22.967, -53.863, 60.094 ], "bp2_params": [ 0.608, -0.315, 0.044, 36.180, -47.782, 40.481 ], "groove_widths": [ 20.370, null, 10.867, null ], "simple_Rise": 5.028, "simple_Twist": 42.401, "simple_hRise": 2.480, "simple_hTwist": 65.089 }, { "index": 4, "nt1": "///A/1566", "nt2": "///A/1519", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.608, -0.315, 0.044, 36.180, -47.782, 40.481 ], "step_params": [ 1.550, 0.003, 5.892, -25.730, 30.245, 52.525 ], "heli_params": [ -2.240, -3.351, 4.285, 29.871, 25.412, 64.983 ], "bp2_params": [ 2.768, -0.556, -0.854, 5.150, -12.035, -15.680 ], "groove_widths": [ 20.542, 11.862, 9.552, 9.350 ], "simple_Rise": 5.892, "simple_Twist": 39.198, "simple_hRise": 3.572, "simple_hTwist": 55.235 }, { "index": 5, "nt1": "///A/1567", "nt2": "///A/1517", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.768, -0.556, -0.854, 5.150, -12.035, -15.680 ], "step_params": [ -0.644, 1.188, 3.566, -14.960, 9.375, -173.960 ], "heli_params": [ -0.603, -0.335, 3.556, -4.694, -7.490, -174.032 ], "bp2_params": [ 8.230, -5.151, 0.388, 15.958, -1.246, 113.700 ], "groove_widths": [ 23.391, 12.751, 10.971, 9.680 ], "simple_Rise": 3.566, "simple_Twist": 25.385, "simple_hRise": 3.609, "simple_hTwist": 30.837 }, { "index": 6, "nt1": "///A/1568", "nt2": "///A/1516", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "tHH", "DSSR": "tM+M", "bp1_params": [ 8.230, -5.151, 0.388, 15.958, -1.246, 113.700 ], "step_params": [ 0.107, -3.115, 2.893, 7.820, 0.467, -147.779 ], "heli_params": [ 1.619, 0.085, 2.894, -0.243, 4.069, -147.856 ], "bp2_params": [ -4.401, -1.423, 0.053, -13.493, 4.075, -81.608 ], "groove_widths": [ 24.752, 20.608, 14.090, 13.759 ], "simple_Rise": 2.893, "simple_Twist": 1.457, "simple_hRise": 0.452, "simple_hTwist": 7.968 }, { "index": 7, "nt1": "///A/1569", "nt2": "///A/1515", "bp": "A-C", "name": "~rHoogsteen", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.401, -1.423, 0.053, -13.493, 4.075, -81.608 ], "step_params": [ 2.890, 1.725, 4.030, 6.029, 27.223, 21.341 ], "heli_params": [ -3.726, -3.346, 4.302, 52.020, -11.522, 34.983 ], "bp2_params": [ -0.223, -0.199, -0.003, -6.785, 8.726, 0.153 ], "groove_widths": [ 20.809, 19.735, 21.240, 20.969 ], "simple_Rise": 4.030, "simple_Twist": 47.689, "simple_hRise": 4.644, "simple_hTwist": 54.828 }, { "index": 8, "nt1": "///A/1571", "nt2": "///A/1514", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.223, -0.199, -0.003, -6.785, 8.726, 0.153 ], "step_params": [ -0.504, -1.357, 3.046, 0.908, 5.558, 27.820 ], "heli_params": [ -3.908, 1.214, 2.711, 11.413, -1.865, 28.374 ], "bp2_params": [ -0.818, -0.571, -0.448, 4.720, 5.550, 0.366 ], "groove_widths": [ 17.436, 15.446, 21.049, 20.365 ], "simple_Rise": 3.046, "simple_Twist": 31.175, "simple_hRise": 2.754, "simple_hTwist": 31.667 }, { "index": 9, "nt1": "///A/1572", "nt2": "///A/1513", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.818, -0.571, -0.448, 4.720, 5.550, 0.366 ], "step_params": [ 1.005, -1.275, 3.660, -1.336, -1.636, 43.346 ], "heli_params": [ -1.547, -1.505, 3.672, -2.213, 1.808, 43.395 ], "bp2_params": [ 0.195, -0.292, -0.849, 0.261, -3.504, 2.761 ], "groove_widths": [ 16.621, 14.351, 13.886, 13.886 ], "simple_Rise": 3.660, "simple_Twist": 37.839, "simple_hRise": 3.673, "simple_hTwist": 37.896 }, { "index": 10, "nt1": "///A/1573", "nt2": "///A/1594", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.195, -0.292, -0.849, 0.261, -3.504, 2.761 ], "step_params": [ -0.776, 0.480, 3.992, -0.495, 3.458, 58.151 ], "heli_params": [ 0.270, 0.765, 4.018, 3.554, 0.509, 58.246 ], "bp2_params": [ 6.653, -3.550, -0.631, 2.898, -6.605, -4.131 ], "groove_widths": [ 16.736, 13.604, 10.349, 10.296 ], "simple_Rise": 3.992, "simple_Twist": 17.085, "simple_hRise": 4.029, "simple_hTwist": 17.436 }, { "index": 11, "nt1": "///A/1574", "nt2": "///A/1593", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.653, -3.550, -0.631, 2.898, -6.605, -4.131 ], "step_params": [ 1.909, 0.184, 5.667, -12.094, 28.078, 8.159 ], "heli_params": [ -8.153, -7.161, 0.914, 69.259, 29.831, 31.617 ], "bp2_params": [ -6.839, -4.364, -0.402, -8.901, -13.562, -13.333 ], "groove_widths": [ 19.380, 16.943, 11.491, 11.112 ], "simple_Rise": 5.667, "simple_Twist": 94.619, "simple_hRise": 5.368, "simple_hTwist": 98.305 }, { "index": 12, "nt1": "///A/1575", "nt2": "///A/1591", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.839, -4.364, -0.402, -8.901, -13.562, -13.333 ], "step_params": [ 1.400, -0.316, 4.019, 0.847, 4.392, 52.323 ], "heli_params": [ -0.710, -1.514, 4.003, 4.970, -0.959, 52.500 ], "bp2_params": [ -0.168, -0.214, -0.882, -6.086, -1.092, 1.482 ], "groove_widths": [ 21.316, null, 12.769, null ], "simple_Rise": 4.019, "simple_Twist": 8.934, "simple_hRise": 3.576, "simple_hTwist": 9.989 }, { "index": 13, "nt1": "///A/1576", "nt2": "///A/1590", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.168, -0.214, -0.882, -6.086, -1.092, 1.482 ], "step_params": [ 0.083, -1.476, 3.006, -2.327, 2.897, 30.070 ], "heli_params": [ -3.350, -0.580, 2.840, 5.556, 4.463, 30.293 ], "bp2_params": [ 0.167, -0.184, -0.545, 1.677, 0.219, 1.636 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.006, "simple_Twist": 27.813, "simple_hRise": 2.825, "simple_hTwist": 28.056 }, { "index": 14, "nt1": "///A/1577", "nt2": "///A/1589", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.167, -0.184, -0.545, 1.677, 0.219, 1.636 ], "step_params": [ -1.110, -1.568, 3.567, 4.358, 7.557, 64.611 ], "heli_params": [ -1.788, 1.222, 3.313, 7.037, -4.058, 65.134 ], "bp2_params": [ 7.083, -4.113, -0.073, -4.135, -6.755, -33.387 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.567, "simple_Twist": 23.097, "simple_hRise": 2.675, "simple_hTwist": 24.669 }, { "index": 15, "nt1": "///A/1578", "nt2": "///A/1588", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 54, "num_stems": 1, "strand1": "ACC", "strand2": "UGG", "bp_type": ".||", "helix_form": "x.", "helical_rise": 3.616, "helical_rise_std": 0.386, "helical_radius": 8.509, "helical_radius_std": 1.408, "helical_axis": [ -0.486, -0.318, -0.814 ], "point1": [ 183.714, 188.372, 225.339 ], "point2": [ 180.120, 186.021, 219.325 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/1653", "nt2": "///A/1666", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.051, -1.521, 0.545, -5.786, 6.332, -96.742 ], "step_params": [ 1.845, -2.278, 3.048, -1.495, 11.536, 83.263 ], "heli_params": [ -1.947, -1.411, 2.745, 8.645, 1.121, 83.925 ], "bp2_params": [ 0.126, -0.109, -0.271, 14.402, 13.064, 0.188 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.048, "simple_Twist": 58.351, "simple_hRise": 2.553, "simple_hTwist": 59.399 }, { "index": 2, "nt1": "///A/1656", "nt2": "///A/1665", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.126, -0.109, -0.271, 14.402, 13.064, 0.188 ], "step_params": [ -0.280, -2.075, 3.387, -2.444, 3.602, 36.019 ], "heli_params": [ -3.841, 0.105, 3.183, 5.799, 3.934, 36.273 ], "bp2_params": [ 0.141, -0.209, -0.216, 7.788, 7.791, -0.689 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.387, "simple_Twist": 36.574, "simple_hRise": 3.187, "simple_hTwist": 36.823 }, { "index": 3, "nt1": "///A/1657", "nt2": "///A/1664", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 55, "num_stems": 3, "strand1": "AAGAAGGCCCAGGCGCAA", "strand2": "CUCUUCCGGGUCUGCAAU", "bp_type": ".|||.||||||||||..|", "helix_form": "..xxxxAA....xAxxx", "helical_rise": 3.374, "helical_rise_std": 1.297, "helical_radius": 9.590, "helical_radius_std": 1.511, "helical_axis": [ 0.541, 0.798, -0.265 ], "point1": [ 202.627, 139.823, 217.873 ], "point2": [ 233.933, 186.022, 202.529 ], "num_pairs": 18, "pairs": [ { "index": 1, "nt1": "///A/1709", "nt2": "///A/2025", "bp": "A+C", "name": "--", "Saenger": "--", "LW": "..W", "DSSR": "..+W", "bp1_params": [ -0.201, -2.809, -0.686, 14.292, -22.032, 142.111 ], "step_params": [ 0.511, -0.057, 3.573, -1.353, -0.115, 128.975 ], "heli_params": [ -0.030, -0.294, 3.570, -0.063, 0.749, 128.978 ], "bp2_params": [ 0.189, -0.105, -1.043, -16.796, -1.589, -2.487 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.573, "simple_Twist": 2.183, "simple_hRise": 2.767, "simple_hTwist": 2.571 }, { "index": 2, "nt1": "///A/1710", "nt2": "///A/2024", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.189, -0.105, -1.043, -16.796, -1.589, -2.487 ], "step_params": [ 1.444, -1.742, 3.398, -4.608, -3.487, 25.075 ], "heli_params": [ -2.897, -4.584, 3.291, -7.899, 10.438, 25.722 ], "bp2_params": [ -0.077, -0.119, -0.285, -9.702, 22.733, 0.177 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.398, "simple_Twist": 27.611, "simple_hRise": 3.308, "simple_hTwist": 28.198 }, { "index": 3, "nt1": "///A/1711", "nt2": "///A/2023", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.077, -0.119, -0.285, -9.702, 22.733, 0.177 ], "step_params": [ -2.752, -1.686, 3.389, -0.400, -3.522, 59.674 ], "heli_params": [ -1.507, 2.741, 3.491, -3.536, 0.401, 59.770 ], "bp2_params": [ 0.104, -0.242, 0.877, 7.395, 8.922, 0.685 ], "groove_widths": [ 16.982, null, 11.225, null ], "simple_Rise": 3.389, "simple_Twist": 57.499, "simple_hRise": 3.495, "simple_hTwist": 57.599 }, { "index": 4, "nt1": "///A/1714", "nt2": "///A/2022", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.104, -0.242, 0.877, 7.395, 8.922, 0.685 ], "step_params": [ 0.345, -3.415, 4.091, 21.673, 7.384, 20.848 ], "heli_params": [ -8.082, 4.246, 2.213, 15.551, -45.645, 30.872 ], "bp2_params": [ -4.351, -2.217, -0.255, -10.419, -2.601, -90.058 ], "groove_widths": [ 20.493, 12.036, 12.324, 11.697 ], "simple_Rise": 4.091, "simple_Twist": 48.451, "simple_hRise": 3.430, "simple_hTwist": 53.292 }, { "index": 5, "nt1": "///A/1713", "nt2": "///A/2020", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.351, -2.217, -0.255, -10.419, -2.601, -90.058 ], "step_params": [ 2.124, -1.005, 3.226, -2.484, 7.640, 67.866 ], "heli_params": [ -1.171, -1.982, 3.042, 6.818, 2.217, 68.283 ], "bp2_params": [ 0.071, 0.252, -0.618, 10.581, 12.381, -4.001 ], "groove_widths": [ 23.675, 12.488, 12.322, 12.116 ], "simple_Rise": 3.226, "simple_Twist": 40.329, "simple_hRise": 2.867, "simple_hTwist": 41.088 }, { "index": 6, "nt1": "///A/1719", "nt2": "///A/2019", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.071, 0.252, -0.618, 10.581, 12.381, -4.001 ], "step_params": [ -2.377, -1.965, 7.012, -16.721, 13.193, 89.554 ], "heli_params": [ -1.931, 0.950, 7.013, 9.259, 11.735, 91.527 ], "bp2_params": [ -0.221, -0.235, 0.787, 3.217, 8.413, 4.503 ], "groove_widths": [ 22.084, 16.017, 10.276, 8.816 ], "simple_Rise": 7.012, "simple_Twist": 91.719, "simple_hRise": 7.017, "simple_hTwist": 93.619 }, { "index": 7, "nt1": "///A/1793", "nt2": "///A/2017", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.221, -0.235, 0.787, 3.217, 8.413, 4.503 ], "step_params": [ 0.728, -2.103, 3.214, 3.189, 2.093, 30.989 ], "heli_params": [ -4.295, -0.763, 3.126, 3.899, -5.939, 31.217 ], "bp2_params": [ 0.207, -0.160, 0.396, 6.343, 7.394, 3.341 ], "groove_widths": [ 20.886, 16.499, 8.459, 8.170 ], "simple_Rise": 3.214, "simple_Twist": 28.244, "simple_hRise": 3.115, "simple_hTwist": 28.496 }, { "index": 8, "nt1": "///A/1794", "nt2": "///A/2016", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.207, -0.160, 0.396, 6.343, 7.394, 3.341 ], "step_params": [ -0.038, -2.170, 3.250, 7.784, 9.237, 33.727 ], "heli_params": [ -4.744, 1.083, 2.518, 15.324, -12.913, 35.765 ], "bp2_params": [ 0.220, -0.189, -0.348, -2.798, -5.832, 2.003 ], "groove_widths": [ 18.535, 14.749, 23.382, 18.395 ], "simple_Rise": 3.250, "simple_Twist": 33.906, "simple_hRise": 2.522, "simple_hTwist": 35.934 }, { "index": 9, "nt1": "///A/1795", "nt2": "///A/2015", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.220, -0.189, -0.348, -2.798, -5.832, 2.003 ], "step_params": [ -0.152, -2.482, 3.264, -6.611, -0.556, 28.679 ], "heli_params": [ -4.766, -1.132, 3.263, -1.104, 13.125, 29.421 ], "bp2_params": [ 0.143, -0.244, 0.676, 1.865, -1.621, -1.423 ], "groove_widths": [ 16.765, 14.857, 19.727, 19.067 ], "simple_Rise": 3.264, "simple_Twist": 28.942, "simple_hRise": 3.264, "simple_hTwist": 29.677 }, { "index": 10, "nt1": "///A/1796", "nt2": "///A/2014", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.143, -0.244, 0.676, 1.865, -1.621, -1.423 ], "step_params": [ 0.420, -2.557, 3.172, -0.256, 10.449, 24.541 ], "heli_params": [ -7.775, -0.966, 1.935, 23.279, 0.571, 26.642 ], "bp2_params": [ 0.005, -0.210, 0.794, -3.645, -6.602, -4.434 ], "groove_widths": [ 17.316, 15.535, 18.843, 14.627 ], "simple_Rise": 3.172, "simple_Twist": 24.919, "simple_hRise": 1.955, "simple_hTwist": 26.990 }, { "index": 11, "nt1": "///A/1797", "nt2": "///A/2013", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.005, -0.210, 0.794, -3.645, -6.602, -4.434 ], "step_params": [ 0.570, -2.163, 2.929, 0.318, 6.636, 30.368 ], "heli_params": [ -5.091, -1.014, 2.419, 12.480, -0.598, 31.070 ], "bp2_params": [ -0.154, -0.301, 0.840, 0.665, -0.048, 1.541 ], "groove_widths": [ 17.289, 15.418, 19.047, 14.742 ], "simple_Rise": 2.929, "simple_Twist": 31.938, "simple_hRise": 2.447, "simple_hTwist": 32.604 }, { "index": 12, "nt1": "///A/1798", "nt2": "///A/2012", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.154, -0.301, 0.840, 0.665, -0.048, 1.541 ], "step_params": [ 0.576, -2.381, 3.129, 0.796, 3.439, 28.233 ], "heli_params": [ -5.567, -1.004, 2.839, 7.016, -1.624, 28.449 ], "bp2_params": [ -1.742, -0.314, 0.445, -1.907, 4.891, 5.777 ], "groove_widths": [ 17.024, 14.355, 18.413, 16.809 ], "simple_Rise": 3.129, "simple_Twist": 37.284, "simple_hRise": 2.916, "simple_hTwist": 37.445 }, { "index": 13, "nt1": "///A/1799", "nt2": "///A/2011", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.742, -0.314, 0.445, -1.907, 4.891, 5.777 ], "step_params": [ 0.568, -1.263, 3.284, 4.128, 5.296, 49.191 ], "heli_params": [ -1.891, -0.375, 3.175, 6.327, -4.933, 49.618 ], "bp2_params": [ 0.161, -0.113, 0.159, -2.077, 3.793, -0.033 ], "groove_widths": [ 20.066, 18.350, 17.466, 14.520 ], "simple_Rise": 3.284, "simple_Twist": 38.342, "simple_hRise": 3.131, "simple_hTwist": 38.904 }, { "index": 14, "nt1": "///A/1800", "nt2": "///A/2009", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.161, -0.113, 0.159, -2.077, 3.793, -0.033 ], "step_params": [ 0.213, -1.142, 2.572, 0.347, 18.862, 24.379 ], "heli_params": [ -4.650, -0.356, 1.361, 38.190, -0.703, 30.738 ], "bp2_params": [ -0.458, 0.296, 0.033, 19.666, -13.244, 4.633 ], "groove_widths": [ 20.631, 19.530, 15.069, 9.396 ], "simple_Rise": 2.572, "simple_Twist": 28.228, "simple_hRise": 1.534, "simple_hTwist": 33.845 }, { "index": 15, "nt1": "///A/1801", "nt2": "///A/2008", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.458, 0.296, 0.033, 19.666, -13.244, 4.633 ], "step_params": [ 1.190, 0.229, 2.881, -12.621, -24.615, -113.941 ], "heli_params": [ 0.102, 0.580, 2.962, 14.562, -7.467, -116.089 ], "bp2_params": [ 3.771, 0.077, 0.776, -33.659, -20.581, -57.160 ], "groove_widths": [ 19.720, null, 13.551, null ], "simple_Rise": 2.881, "simple_Twist": -42.807, "simple_hRise": 2.849, "simple_hTwist": -50.612 }, { "index": 16, "nt1": "///A/2005", "nt2": "///A/2007", "bp": "C+A", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "bp1_params": [ 3.771, 0.077, 0.776, -33.659, -20.581, -57.160 ], "step_params": [ 4.102, -4.671, 3.596, -22.671, 21.703, 76.346 ], "heli_params": [ -4.014, -3.598, 1.386, 16.904, 17.659, 81.626 ], "bp2_params": [ 3.557, -3.794, 0.284, 14.871, 22.692, -78.404 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.596, "simple_Twist": 96.178, "simple_hRise": 2.034, "simple_hTwist": 99.956 }, { "index": 17, "nt1": "///A/1802", "nt2": "///A/2006", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "bp1_params": [ 3.557, -3.794, 0.284, 14.871, 22.692, -78.404 ], "step_params": [ 1.879, 0.959, 3.900, -29.340, 0.578, 78.175 ], "heli_params": [ 0.710, -2.238, 3.170, 0.444, 22.548, 82.668 ], "bp2_params": [ -0.668, 0.106, 0.301, 21.704, -2.493, -9.068 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.900, "simple_Twist": -12.622, "simple_hRise": 3.265, "simple_hTwist": -31.890 }, { "index": 18, "nt1": "///A/1858", "nt2": "///A/1738", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 56, "num_stems": 1, "strand1": "ACCCCGAACU", "strand2": "UGGGGAAGGG", "bp_type": "|||||...|.", "helix_form": "AAA..x...", "helical_rise": 3.213, "helical_rise_std": 0.740, "helical_radius": 10.484, "helical_radius_std": 3.062, "helical_axis": [ 0.819, 0.523, -0.238 ], "point1": [ 217.839, 163.311, 230.782 ], "point2": [ 241.505, 178.416, 223.902 ], "num_pairs": 10, "pairs": [ { "index": 1, "nt1": "///A/1727", "nt2": "///A/1751", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.036, -0.073, -0.210, -8.422, 6.974, -1.785 ], "step_params": [ 0.502, -1.058, 3.115, -2.027, 6.474, 30.097 ], "heli_params": [ -3.142, -1.305, 2.793, 12.271, 3.842, 30.835 ], "bp2_params": [ 0.182, -0.157, 0.046, 4.033, 6.922, 0.928 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.115, "simple_Twist": 29.283, "simple_hRise": 2.782, "simple_hTwist": 30.041 }, { "index": 2, "nt1": "///A/1728", "nt2": "///A/1750", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.182, -0.157, 0.046, 4.033, 6.922, 0.928 ], "step_params": [ 0.568, -1.898, 3.073, -0.452, 3.606, 34.614 ], "heli_params": [ -3.674, -1.012, 2.860, 6.039, 0.757, 34.798 ], "bp2_params": [ 0.193, -0.156, 0.155, 5.734, 2.851, 2.167 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.073, "simple_Twist": 34.413, "simple_hRise": 2.858, "simple_hTwist": 34.598 }, { "index": 3, "nt1": "///A/1729", "nt2": "///A/1749", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.193, -0.156, 0.155, 5.734, 2.851, 2.167 ], "step_params": [ -0.413, -2.080, 3.067, 2.713, 16.171, 33.494 ], "heli_params": [ -4.978, 0.935, 1.864, 26.200, -4.395, 37.189 ], "bp2_params": [ 0.170, -0.175, 0.010, 1.941, 5.133, -0.324 ], "groove_widths": [ 17.318, null, 17.591, null ], "simple_Rise": 3.067, "simple_Twist": 33.585, "simple_hRise": 1.867, "simple_hTwist": 37.271 }, { "index": 4, "nt1": "///A/1730", "nt2": "///A/1748", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.170, -0.175, 0.010, 1.941, 5.133, -0.324 ], "step_params": [ -0.482, -2.413, 3.035, -1.592, 9.195, 40.823 ], "heli_params": [ -4.201, 0.533, 2.475, 12.979, 2.246, 41.832 ], "bp2_params": [ 2.431, -0.338, 0.235, 3.892, -4.227, 2.109 ], "groove_widths": [ 18.792, 15.095, 15.437, 15.149 ], "simple_Rise": 3.035, "simple_Twist": 28.658, "simple_hRise": 2.195, "simple_hTwist": 30.109 }, { "index": 5, "nt1": "///A/1731", "nt2": "///A/1747", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.431, -0.338, 0.235, 3.892, -4.227, 2.109 ], "step_params": [ -1.853, -0.812, 3.893, 5.093, 12.898, 50.173 ], "heli_params": [ -1.911, 2.505, 3.411, 14.885, -5.877, 51.934 ], "bp2_params": [ 6.542, -4.051, 0.648, -13.570, -21.972, -4.603 ], "groove_widths": [ 20.248, 14.420, 21.907, 21.232 ], "simple_Rise": 3.893, "simple_Twist": 19.080, "simple_hRise": 2.324, "simple_hTwist": 23.549 }, { "index": 6, "nt1": "///A/1732", "nt2": "///A/1746", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.542, -4.051, 0.648, -13.570, -21.972, -4.603 ], "step_params": [ -0.194, -5.477, 7.435, -6.891, -2.598, -106.256 ], "heli_params": [ 3.498, -0.329, 7.325, 1.622, -4.304, -106.433 ], "bp2_params": [ 5.993, -5.414, -0.769, 20.980, -18.151, 175.969 ], "groove_widths": [ 20.889, 16.024, 20.398, 20.378 ], "simple_Rise": 7.435, "simple_Twist": 94.237, "simple_hRise": 7.548, "simple_hTwist": 94.457 }, { "index": 7, "nt1": "///A/1734", "nt2": "///A/1743", "bp": "A+A", "name": "--", "Saenger": "02-II", "LW": "tHH", "DSSR": "tM+M", "bp1_params": [ 5.993, -5.414, -0.769, 20.980, -18.151, 175.969 ], "step_params": [ -0.370, -1.585, 2.999, -0.114, 1.330, 115.551 ], "heli_params": [ -0.950, 0.218, 2.988, 0.786, 0.067, 115.556 ], "bp2_params": [ -6.633, -3.462, -1.028, -9.038, -6.382, -4.051 ], "groove_widths": [ 22.170, null, 20.189, null ], "simple_Rise": 2.999, "simple_Twist": 1.348, "simple_hRise": 1.042, "simple_hTwist": 1.898 }, { "index": 8, "nt1": "///A/1735", "nt2": "///A/1742", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.633, -3.462, -1.028, -9.038, -6.382, -4.051 ], "step_params": [ 0.509, -0.218, 3.597, -5.632, 1.169, 58.665 ], "heli_params": [ -0.287, -0.834, 3.535, 1.190, 5.733, 58.921 ], "bp2_params": [ 0.202, -0.200, -0.719, 0.696, 0.236, 1.761 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.597, "simple_Twist": 15.577, "simple_hRise": 3.190, "simple_hTwist": 16.599 }, { "index": 9, "nt1": "///A/1736", "nt2": "///A/1741", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.202, -0.200, -0.719, 0.696, 0.236, 1.761 ], "step_params": [ -1.322, -1.241, 3.249, 6.983, 11.298, 90.029 ], "heli_params": [ -1.087, 1.062, 3.027, 7.952, -4.915, 90.795 ], "bp2_params": [ 1.439, -4.051, 0.118, -11.424, -14.572, -100.860 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.249, "simple_Twist": -0.653, "simple_hRise": 1.909, "simple_hTwist": -13.298 }, { "index": 10, "nt1": "///A/1737", "nt2": "///A/1740", "bp": "U+G", "name": "--", "Saenger": "--", "LW": "t.W", "DSSR": "t.+W" } ] }, { "index": 57, "num_stems": 2, "strand1": "AGCCCGAGAGAGCC", "strand2": "GUGGGAUGUCUCGG", "bp_type": ".||||...||||||", "helix_form": "..AA..x.AA..x", "helical_rise": 3.085, "helical_rise_std": 0.284, "helical_radius": 9.197, "helical_radius_std": 2.317, "helical_axis": [ -0.121, -0.896, -0.428 ], "point1": [ 226.933, 189.059, 267.472 ], "point2": [ 222.050, 153.035, 250.276 ], "num_pairs": 14, "pairs": [ { "index": 1, "nt1": "///A/1768", "nt2": "///A/1765", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.660, -4.582, 0.433, -16.615, 5.879, -1.081 ], "step_params": [ 1.044, -1.256, 2.614, 2.060, 5.628, 40.572 ], "heli_params": [ -2.274, -1.315, 2.474, 8.063, -2.951, 40.993 ], "bp2_params": [ -2.988, -0.549, -0.141, -2.417, 12.369, 5.390 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.614, "simple_Twist": 9.935, "simple_hRise": 1.817, "simple_hTwist": 11.598 }, { "index": 2, "nt1": "///A/1769", "nt2": "///A/1764", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.988, -0.549, -0.141, -2.417, 12.369, 5.390 ], "step_params": [ -0.594, -1.429, 3.107, -2.174, 3.403, 42.667 ], "heli_params": [ -2.274, 0.609, 3.014, 4.664, 2.979, 42.849 ], "bp2_params": [ 0.162, -0.152, 0.102, 2.491, 7.526, 0.963 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.107, "simple_Twist": 24.497, "simple_hRise": 2.925, "simple_hTwist": 24.822 }, { "index": 3, "nt1": "///A/1770", "nt2": "///A/1763", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.162, -0.152, 0.102, 2.491, 7.526, 0.963 ], "step_params": [ -0.140, -2.165, 3.184, 2.910, 6.134, 30.982 ], "heli_params": [ -4.989, 0.744, 2.692, 11.312, -5.367, 31.699 ], "bp2_params": [ 0.167, -0.188, -0.320, 1.477, 2.129, -0.979 ], "groove_widths": [ 16.974, null, 17.548, null ], "simple_Rise": 3.184, "simple_Twist": 31.038, "simple_hRise": 2.693, "simple_hTwist": 31.754 }, { "index": 4, "nt1": "///A/1771", "nt2": "///A/1762", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.167, -0.188, -0.320, 1.477, 2.129, -0.979 ], "step_params": [ -0.437, -2.174, 3.009, -2.552, 5.829, 33.593 ], "heli_params": [ -4.500, 0.394, 2.631, 9.974, 4.366, 34.173 ], "bp2_params": [ 0.239, -0.159, -0.219, 6.702, -3.132, -1.029 ], "groove_widths": [ 16.731, 15.153, 15.311, 13.540 ], "simple_Rise": 3.009, "simple_Twist": 33.466, "simple_hRise": 2.629, "simple_hTwist": 34.049 }, { "index": 5, "nt1": "///A/1772", "nt2": "///A/1761", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.239, -0.159, -0.219, 6.702, -3.132, -1.029 ], "step_params": [ -1.383, -0.901, 3.756, 1.883, -0.765, 53.107 ], "heli_params": [ -0.952, 1.684, 3.721, -0.855, -2.105, 53.143 ], "bp2_params": [ 6.660, -3.431, -0.810, 3.790, -5.019, -12.596 ], "groove_widths": [ 16.443, 15.172, 12.583, 12.207 ], "simple_Rise": 3.756, "simple_Twist": 14.081, "simple_hRise": 3.584, "simple_hTwist": 14.226 }, { "index": 6, "nt1": "///A/1773", "nt2": "///A/1760", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.660, -3.431, -0.810, 3.790, -5.019, -12.596 ], "step_params": [ -4.006, -1.516, 3.359, -8.925, 5.443, -9.281 ], "heli_params": [ 2.749, -22.182, 0.270, -25.259, -41.418, -13.971 ], "bp2_params": [ -4.747, -3.785, 0.556, -2.084, -4.834, -86.982 ], "groove_widths": [ 16.636, 15.662, 20.194, 18.344 ], "simple_Rise": 3.359, "simple_Twist": 63.462, "simple_hRise": 3.707, "simple_hTwist": 64.228 }, { "index": 7, "nt1": "///A/1774", "nt2": "///A/1759", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.747, -3.785, 0.556, -2.084, -4.834, -86.982 ], "step_params": [ -0.676, -4.791, 3.868, 11.836, 1.282, 78.218 ], "heli_params": [ -3.807, 0.907, 3.687, 1.011, -9.332, 78.975 ], "bp2_params": [ 3.153, 0.778, -0.632, -18.068, 8.498, -88.316 ], "groove_widths": [ 17.632, 16.831, 19.682, 19.651 ], "simple_Rise": 3.868, "simple_Twist": 31.283, "simple_hRise": 3.215, "simple_hTwist": 33.419 }, { "index": 8, "nt1": "///A/1775", "nt2": "///A/1757", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 3.153, 0.778, -0.632, -18.068, 8.498, -88.316 ], "step_params": [ 0.557, -0.479, 3.631, -5.922, 0.920, -21.483 ], "heli_params": [ 0.846, -1.083, 3.666, -2.409, -15.502, -22.294 ], "bp2_params": [ 0.120, -0.122, -0.401, -15.165, -0.118, 0.088 ], "groove_widths": [ 19.412, 17.661, 16.680, 15.953 ], "simple_Rise": 3.631, "simple_Twist": -7.739, "simple_hRise": 3.254, "simple_hTwist": -9.785 }, { "index": 9, "nt1": "///A/1776", "nt2": "///A/1756", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.120, -0.122, -0.401, -15.165, -0.118, 0.088 ], "step_params": [ -0.323, -1.527, 2.920, -4.687, 2.271, 28.635 ], "heli_params": [ -3.479, -0.264, 2.809, 4.544, 9.379, 29.095 ], "bp2_params": [ -0.180, -0.223, 0.366, -6.925, 3.469, -2.132 ], "groove_widths": [ 18.947, 16.135, 17.474, 15.589 ], "simple_Rise": 2.920, "simple_Twist": 30.112, "simple_hRise": 2.816, "simple_hTwist": 30.549 }, { "index": 10, "nt1": "///A/1777", "nt2": "///A/1755", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.180, -0.223, 0.366, -6.925, 3.469, -2.132 ], "step_params": [ 0.377, -1.777, 2.977, -0.287, 4.060, 35.572 ], "heli_params": [ -3.404, -0.650, 2.761, 6.618, 0.468, 35.796 ], "bp2_params": [ 0.063, -0.137, 0.340, -2.026, 6.194, -0.554 ], "groove_widths": [ 16.794, 14.625, 15.959, 13.597 ], "simple_Rise": 2.977, "simple_Twist": 34.356, "simple_hRise": 2.752, "simple_hTwist": 34.589 }, { "index": 11, "nt1": "///A/1778", "nt2": "///A/1754", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.063, -0.137, 0.340, -2.026, 6.194, -0.554 ], "step_params": [ 0.588, -2.070, 3.175, 6.531, 8.817, 30.818 ], "heli_params": [ -5.062, -0.021, 2.569, 15.969, -11.829, 32.668 ], "bp2_params": [ -0.205, -0.179, -0.273, -3.158, -1.323, 0.597 ], "groove_widths": [ 16.429, null, 14.534, null ], "simple_Rise": 3.175, "simple_Twist": 32.424, "simple_hRise": 2.606, "simple_hTwist": 34.183 }, { "index": 12, "nt1": "///A/1779", "nt2": "///A/1753", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.205, -0.179, -0.273, -3.158, -1.323, 0.597 ], "step_params": [ -0.094, -1.724, 3.272, -4.539, -1.184, 37.992 ], "heli_params": [ -2.480, -0.432, 3.312, -1.810, 6.939, 38.269 ], "bp2_params": [ 0.179, -0.212, 0.456, -4.327, 0.851, -2.002 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.272, "simple_Twist": 35.854, "simple_hRise": 3.313, "simple_hTwist": 36.149 }, { "index": 13, "nt1": "///A/1780", "nt2": "///A/1752", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.179, -0.212, 0.456, -4.327, 0.851, -2.002 ], "step_params": [ -0.810, -1.827, 3.120, -1.734, 3.216, 16.878 ], "heli_params": [ -7.928, 1.703, 2.793, 10.793, 5.820, 17.266 ], "bp2_params": [ 0.118, -0.389, 1.136, 1.969, -0.241, 0.101 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.120, "simple_Twist": 16.794, "simple_hRise": 2.791, "simple_hTwist": 17.184 }, { "index": 14, "nt1": "///A/1781", "nt2": "///A/1785", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 58, "num_stems": 2, "strand1": "CAGAACGUC", "strand2": "CGCUUGCAG", "bp_type": "..|||||||", "helix_form": "xxAA.xAA", "helical_rise": 2.971, "helical_rise_std": 1.174, "helical_radius": 10.192, "helical_radius_std": 2.442, "helical_axis": [ 0.572, 0.642, -0.511 ], "point1": [ 201.505, 168.909, 191.180 ], "point2": [ 214.965, 184.025, 179.141 ], "num_pairs": 9, "pairs": [ { "index": 1, "nt1": "///A/1811", "nt2": "///A/2615", "bp": "C+C", "name": "--", "Saenger": "--", "LW": "tWW", "DSSR": "tW+W", "bp1_params": [ 1.681, -1.915, 0.062, -26.009, 21.620, 171.206 ], "step_params": [ -0.311, 0.072, 7.594, 2.094, 11.126, 73.608 ], "heli_params": [ -0.748, 0.410, 7.530, 9.232, -1.738, 74.352 ], "bp2_params": [ 2.653, 8.314, -1.876, 13.217, -1.070, 168.000 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 7.594, "simple_Twist": -83.890, "simple_hRise": 7.547, "simple_hTwist": -84.510 }, { "index": 2, "nt1": "///A/1812", "nt2": "///A/2636", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "cSS", "DSSR": "cm-m", "bp1_params": [ 2.653, 8.314, -1.876, 13.217, -1.070, 168.000 ], "step_params": [ -1.275, -4.763, 3.807, -6.236, 18.761, -48.776 ], "heli_params": [ 3.658, -2.021, 5.018, -21.712, -7.218, -52.403 ], "bp2_params": [ -0.220, -0.149, -0.046, -3.354, 13.569, 2.388 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.807, "simple_Twist": -16.051, "simple_hRise": 5.598, "simple_hTwist": -25.415 }, { "index": 3, "nt1": "///A/2617", "nt2": "///A/2635", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.220, -0.149, -0.046, -3.354, 13.569, 2.388 ], "step_params": [ 0.538, -1.767, 3.120, 4.011, 15.043, 31.834 ], "heli_params": [ -4.799, -0.382, 2.145, 25.601, -6.826, 35.348 ], "bp2_params": [ 0.008, -0.115, -0.553, 0.022, 4.911, 3.744 ], "groove_widths": [ 18.767, null, 25.651, null ], "simple_Rise": 3.120, "simple_Twist": 30.437, "simple_hRise": 2.094, "simple_hTwist": 34.103 }, { "index": 4, "nt1": "///A/2618", "nt2": "///A/2634", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.008, -0.115, -0.553, 0.022, 4.911, 3.744 ], "step_params": [ -0.194, -1.574, 3.498, 0.092, 3.524, 26.600 ], "heli_params": [ -4.337, 0.442, 3.265, 7.616, -0.198, 26.829 ], "bp2_params": [ -0.055, -0.144, -0.506, 6.169, 4.530, 2.717 ], "groove_widths": [ 18.100, 16.739, 20.195, 20.184 ], "simple_Rise": 3.498, "simple_Twist": 26.811, "simple_hRise": 3.267, "simple_hTwist": 27.037 }, { "index": 5, "nt1": "///A/2619", "nt2": "///A/2633", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.055, -0.144, -0.506, 6.169, 4.530, 2.717 ], "step_params": [ 0.719, -1.415, 3.314, 2.993, 3.298, 36.501 ], "heli_params": [ -2.695, -0.730, 3.225, 5.242, -4.757, 36.763 ], "bp2_params": [ 0.866, 0.300, -0.506, 10.852, 0.101, 11.217 ], "groove_widths": [ 17.331, 15.386, 17.979, 15.795 ], "simple_Rise": 3.314, "simple_Twist": 31.720, "simple_hRise": 3.207, "simple_hTwist": 32.023 }, { "index": 6, "nt1": "///A/2620", "nt2": "///A/2632", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.866, 0.300, -0.506, 10.852, 0.101, 11.217 ], "step_params": [ 0.327, -2.352, 3.650, 0.019, 5.296, 27.920 ], "heli_params": [ -6.071, -0.662, 3.159, 10.853, -0.039, 28.408 ], "bp2_params": [ -0.200, -0.181, -0.059, -3.654, 11.709, 1.784 ], "groove_widths": [ 17.270, null, 17.832, null ], "simple_Rise": 3.650, "simple_Twist": 33.905, "simple_hRise": 3.256, "simple_hTwist": 34.304 }, { "index": 7, "nt1": "///A/2621", "nt2": "///A/2630", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.200, -0.181, -0.059, -3.654, 11.709, 1.784 ], "step_params": [ 0.521, -1.605, 3.302, -2.790, 7.442, 31.533 ], "heli_params": [ -4.104, -1.394, 2.805, 13.429, 5.033, 32.495 ], "bp2_params": [ 0.042, -0.142, 0.160, 4.348, 15.020, 5.882 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.302, "simple_Twist": 29.948, "simple_hRise": 2.773, "simple_hTwist": 30.961 }, { "index": 8, "nt1": "///A/2622", "nt2": "///A/2629", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.042, -0.142, 0.160, 4.348, 15.020, 5.882 ], "step_params": [ 0.430, -1.815, 2.961, 8.468, 15.824, 33.707 ], "heli_params": [ -4.406, 0.210, 1.993, 25.194, -13.483, 38.064 ], "bp2_params": [ 0.217, -0.127, -0.266, 0.985, -2.878, 1.077 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.961, "simple_Twist": 32.881, "simple_hRise": 1.964, "simple_hTwist": 37.341 }, { "index": 9, "nt1": "///A/2623", "nt2": "///A/2628", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 59, "num_stems": 1, "strand1": "AGGUCUCU", "strand2": "GUCGGGGA", "bp_type": ".|||||||", "helix_form": ".......", "helical_rise": 2.966, "helical_rise_std": 0.176, "helical_radius": 9.196, "helical_radius_std": 0.757, "helical_axis": [ 0.405, 0.892, -0.203 ], "point1": [ 218.697, 196.071, 197.121 ], "point2": [ 227.053, 214.488, 192.918 ], "num_pairs": 8, "pairs": [ { "index": 1, "nt1": "///A/1820", "nt2": "///A/1857", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.059, -3.140, -1.577, 16.446, -5.649, 6.342 ], "step_params": [ 0.263, -0.755, 4.789, -12.543, 7.673, 48.528 ], "heli_params": [ -1.669, -1.591, 4.438, 9.096, 14.869, 50.577 ], "bp2_params": [ -1.911, -0.398, 0.022, -5.118, 0.850, 0.833 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.789, "simple_Twist": 19.414, "simple_hRise": 3.464, "simple_hTwist": 24.312 }, { "index": 2, "nt1": "///A/1821", "nt2": "///A/1856", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.911, -0.398, 0.022, -5.118, 0.850, 0.833 ], "step_params": [ 0.246, -1.937, 3.408, 0.260, 2.341, 33.394 ], "heli_params": [ -3.758, -0.384, 3.271, 4.067, -0.451, 33.475 ], "bp2_params": [ -0.177, -0.133, -0.218, -3.324, 5.363, 0.814 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.408, "simple_Twist": 24.052, "simple_hRise": 3.210, "simple_hTwist": 24.166 }, { "index": 3, "nt1": "///A/1822", "nt2": "///A/1855", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.177, -0.133, -0.218, -3.324, 5.363, 0.814 ], "step_params": [ 0.627, -1.381, 3.151, 1.899, 2.313, 40.492 ], "heli_params": [ -2.236, -0.701, 3.095, 3.337, -2.739, 40.598 ], "bp2_params": [ 2.250, -0.194, -0.402, 2.512, 10.314, 8.835 ], "groove_widths": [ 17.091, null, 17.130, null ], "simple_Rise": 3.151, "simple_Twist": 26.527, "simple_hRise": 3.058, "simple_hTwist": 26.692 }, { "index": 4, "nt1": "///A/1823", "nt2": "///A/1854", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.250, -0.194, -0.402, 2.512, 10.314, 8.835 ], "step_params": [ -0.524, -2.136, 3.137, 5.263, 11.444, 24.342 ], "heli_params": [ -6.797, 2.156, 1.817, 25.104, -11.546, 27.364 ], "bp2_params": [ 0.198, -0.176, -0.254, -0.484, 3.224, 1.197 ], "groove_widths": [ 17.412, 15.897, 17.027, 15.050 ], "simple_Rise": 3.137, "simple_Twist": 35.859, "simple_hRise": 2.277, "simple_hTwist": 37.938 }, { "index": 5, "nt1": "///A/1824", "nt2": "///A/1853", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.198, -0.176, -0.254, -0.484, 3.224, 1.197 ], "step_params": [ 0.462, -1.464, 3.254, -0.207, 2.507, 36.141 ], "heli_params": [ -2.699, -0.772, 3.147, 4.035, 0.333, 36.226 ], "bp2_params": [ 1.852, -0.339, 0.284, 1.957, 3.368, 3.927 ], "groove_widths": [ 17.466, null, 17.311, null ], "simple_Rise": 3.254, "simple_Twist": 27.096, "simple_hRise": 3.105, "simple_hTwist": 27.211 }, { "index": 6, "nt1": "///A/1825", "nt2": "///A/1852", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.852, -0.339, 0.284, 1.957, 3.368, 3.927 ], "step_params": [ -0.119, -1.909, 2.675, 6.087, 9.344, 26.549 ], "heli_params": [ -5.351, 1.222, 1.840, 19.300, -12.572, 28.758 ], "bp2_params": [ 0.178, -0.089, -0.257, 14.369, 4.872, 2.947 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.675, "simple_Twist": 35.660, "simple_hRise": 2.080, "simple_hTwist": 37.309 }, { "index": 7, "nt1": "///A/1826", "nt2": "///A/1851", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.178, -0.089, -0.257, 14.369, 4.872, 2.947 ], "step_params": [ 0.875, -1.075, 2.943, 8.163, 5.090, 28.960 ], "heli_params": [ -2.967, -0.183, 2.853, 9.841, -15.783, 30.483 ], "bp2_params": [ -0.056, 0.511, -1.076, 27.206, -6.393, 9.565 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.943, "simple_Twist": 30.910, "simple_hRise": 2.867, "simple_hTwist": 32.337 }, { "index": 8, "nt1": "///A/1827", "nt2": "///A/1850", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 60, "num_stems": 1, "strand1": "CAAGCCG", "strand2": "GAGCGGA", "bp_type": "...|||.", "helix_form": "x...A.", "helical_rise": 3.457, "helical_rise_std": 0.513, "helical_radius": 8.468, "helical_radius_std": 1.909, "helical_axis": [ -0.785, -0.142, -0.603 ], "point1": [ 218.183, 223.009, 199.345 ], "point2": [ 201.784, 220.054, 186.764 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///A/1829", "nt2": "///A/1846", "bp": "C+G", "name": "rWC", "Saenger": "22-XXII", "LW": "tWW", "DSSR": "tW+W", "bp1_params": [ -0.284, -4.246, 0.589, 3.643, -2.974, -156.857 ], "step_params": [ -0.375, -0.563, 3.821, -17.861, -5.527, -45.484 ], "heli_params": [ 1.158, -2.002, 3.373, 6.819, -22.035, -48.988 ], "bp2_params": [ 5.839, -5.669, -1.362, 1.590, 3.784, 157.214 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.821, "simple_Twist": 23.831, "simple_hRise": 3.348, "simple_hTwist": 30.206 }, { "index": 2, "nt1": "///A/1831", "nt2": "///A/1844", "bp": "A+A", "name": "--", "Saenger": "--", "LW": "tHH", "DSSR": "tM+M", "bp1_params": [ 5.839, -5.669, -1.362, 1.590, 3.784, 157.214 ], "step_params": [ -0.160, -0.735, 3.526, -3.247, -6.261, 123.884 ], "heli_params": [ -0.358, 0.060, 3.548, -3.546, 1.839, 123.999 ], "bp2_params": [ -6.517, -4.160, -1.400, -2.728, -6.040, -3.385 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.526, "simple_Twist": 11.599, "simple_hRise": 3.392, "simple_hTwist": 13.569 }, { "index": 3, "nt1": "///A/1832", "nt2": "///A/1843", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.517, -4.160, -1.400, -2.728, -6.040, -3.385 ], "step_params": [ 0.327, -0.254, 4.431, -7.561, 3.669, 57.118 ], "heli_params": [ -0.529, -0.887, 4.338, 3.814, 7.860, 57.681 ], "bp2_params": [ -0.216, -0.162, -0.314, -7.288, -2.765, -1.080 ], "groove_widths": [ 21.186, null, 12.927, null ], "simple_Rise": 4.431, "simple_Twist": 13.979, "simple_hRise": 3.596, "simple_hTwist": 16.300 }, { "index": 4, "nt1": "///A/1833", "nt2": "///A/1842", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.216, -0.162, -0.314, -7.288, -2.765, -1.080 ], "step_params": [ 1.363, -1.852, 3.056, 2.071, 0.771, 27.852 ], "heli_params": [ -4.008, -2.359, 3.096, 1.598, -4.295, 27.937 ], "bp2_params": [ 0.119, -0.135, -0.176, -0.154, 0.197, 0.266 ], "groove_widths": [ 17.755, null, 17.374, null ], "simple_Rise": 3.056, "simple_Twist": 25.834, "simple_hRise": 3.099, "simple_hTwist": 25.926 }, { "index": 5, "nt1": "///A/1834", "nt2": "///A/1841", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.119, -0.135, -0.176, -0.154, 0.197, 0.266 ], "step_params": [ 0.092, -2.188, 3.278, -1.644, 13.298, 28.184 ], "heli_params": [ -6.253, -0.440, 2.053, 25.561, 3.159, 31.149 ], "bp2_params": [ 0.285, -0.133, 0.242, 2.762, 18.970, 3.844 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.278, "simple_Twist": 27.728, "simple_hRise": 2.031, "simple_hTwist": 30.739 }, { "index": 6, "nt1": "///A/1835", "nt2": "///A/1840", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.285, -0.133, 0.242, 2.762, 18.970, 3.844 ], "step_params": [ -1.688, -1.459, 2.968, 4.429, 7.414, 57.101 ], "heli_params": [ -1.856, 1.955, 2.650, 7.708, -4.604, 57.696 ], "bp2_params": [ 7.001, -5.008, 0.050, 17.107, 12.617, -25.681 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.968, "simple_Twist": 10.825, "simple_hRise": 1.006, "simple_hTwist": 13.840 }, { "index": 7, "nt1": "///A/1836", "nt2": "///A/1839", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 61, "num_stems": 2, "strand1": "GCUGAGU", "strand2": "CGACCCG", "bp_type": ".|||.||", "helix_form": "xAxxx.", "helical_rise": 2.930, "helical_rise_std": 1.407, "helical_radius": 9.455, "helical_radius_std": 3.757, "helical_axis": [ -0.458, 0.486, -0.745 ], "point1": [ 253.482, 200.966, 162.525 ], "point2": [ 245.479, 209.447, 149.520 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///A/1871", "nt2": "///A/1867", "bp": "G+C", "name": "--", "Saenger": "--", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ 1.568, -4.986, -0.660, 41.832, -24.735, 144.206 ], "step_params": [ -2.816, -3.386, 4.430, -7.783, -26.610, 110.459 ], "heli_params": [ -1.582, 1.559, 5.033, -16.049, 4.694, 112.760 ], "bp2_params": [ 0.201, -0.317, -0.932, -6.932, 0.760, 0.603 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.430, "simple_Twist": -27.305, "simple_hRise": 0.317, "simple_hTwist": -38.724 }, { "index": 2, "nt1": "///A/1872", "nt2": "///A/1926", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.201, -0.317, -0.932, -6.932, 0.760, 0.603 ], "step_params": [ -0.069, -1.196, 3.293, -0.722, 3.525, 30.335 ], "heli_params": [ -2.961, -0.010, 3.137, 6.706, 1.373, 30.543 ], "bp2_params": [ 0.021, -0.184, -0.266, -1.813, 4.300, 1.945 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.293, "simple_Twist": 31.657, "simple_hRise": 3.145, "simple_hTwist": 31.856 }, { "index": 3, "nt1": "///A/1873", "nt2": "///A/1925", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.021, -0.184, -0.266, -1.813, 4.300, 1.945 ], "step_params": [ -1.560, 1.741, 3.632, 29.868, 17.569, 27.125 ], "heli_params": [ 0.533, 5.161, 1.927, 26.906, -45.741, 43.748 ], "bp2_params": [ 0.094, 0.103, 1.222, 72.974, 10.071, 3.829 ], "groove_widths": [ 30.649, null, 14.579, null ], "simple_Rise": 3.632, "simple_Twist": 24.838, "simple_hRise": 1.788, "simple_hTwist": 42.411 }, { "index": 4, "nt1": "///A/1875", "nt2": "///A/1924", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.094, 0.103, 1.222, 72.974, 10.071, 3.829 ], "step_params": [ -1.230, 0.551, 5.978, 30.516, 17.881, 20.199 ], "heli_params": [ -2.683, 7.710, 2.349, 30.934, -52.794, 40.570 ], "bp2_params": [ -1.300, -0.353, 1.351, 49.119, -45.752, -34.742 ], "groove_widths": [ 23.562, null, 13.086, null ], "simple_Rise": 5.978, "simple_Twist": 35.108, "simple_hRise": 3.770, "simple_hTwist": 49.436 }, { "index": 5, "nt1": "///A/1877", "nt2": "///A/1922", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.300, -0.353, 1.351, 49.119, -45.752, -34.742 ], "step_params": [ -0.348, -2.069, 8.145, -2.187, 63.432, 52.533 ], "heli_params": [ -5.687, 0.128, 4.074, 54.381, 1.875, 80.599 ], "bp2_params": [ -0.350, -0.331, 1.194, 10.281, 12.467, 10.515 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 8.145, "simple_Twist": 41.827, "simple_hRise": 3.124, "simple_hTwist": 74.791 }, { "index": 6, "nt1": "///A/1879", "nt2": "///A/1921", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.350, -0.331, 1.194, 10.281, 12.467, 10.515 ], "step_params": [ -0.209, -0.847, 2.807, 4.652, 9.774, 33.691 ], "heli_params": [ -2.579, 0.908, 2.426, 16.347, -7.780, 35.339 ], "bp2_params": [ 0.782, -0.563, 0.434, 29.237, 9.526, 13.061 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.807, "simple_Twist": 26.103, "simple_hRise": 2.278, "simple_hTwist": 28.222 }, { "index": 7, "nt1": "///A/1880", "nt2": "///A/1920", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 62, "num_stems": 1, "strand1": "AGAGGAC", "strand2": "GUUAAGC", "bp_type": ".||....", "helix_form": ".....x", "helical_rise": 2.511, "helical_rise_std": 0.497, "helical_radius": 9.175, "helical_radius_std": 2.672, "helical_axis": [ -0.474, 0.070, -0.878 ], "point1": [ 247.917, 204.984, 133.064 ], "point2": [ 240.917, 206.012, 120.087 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///A/1883", "nt2": "///A/1917", "bp": "A-G", "name": "--", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.142, -2.651, 1.048, -7.463, -0.059, -8.042 ], "step_params": [ 1.608, -1.303, 2.607, -0.660, 10.984, 37.266 ], "heli_params": [ -2.953, -2.480, 2.126, 16.747, 1.006, 38.801 ], "bp2_params": [ -1.382, -0.524, 0.151, 3.420, 5.807, -17.059 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.607, "simple_Twist": 8.151, "simple_hRise": 0.434, "simple_hTwist": 13.687 }, { "index": 2, "nt1": "///A/1884", "nt2": "///A/1916", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.382, -0.524, 0.151, 3.420, 5.807, -17.059 ], "step_params": [ 0.865, -0.863, 3.106, 2.435, 5.763, 44.969 ], "heli_params": [ -1.598, -0.918, 3.019, 7.491, -3.165, 45.380 ], "bp2_params": [ 0.079, -0.204, -0.252, 2.978, -0.099, 2.222 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.106, "simple_Twist": 37.468, "simple_hRise": 2.994, "simple_hTwist": 37.968 }, { "index": 3, "nt1": "///A/1885", "nt2": "///A/1915", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.079, -0.204, -0.252, 2.978, -0.099, 2.222 ], "step_params": [ 1.663, -0.809, 3.069, 5.924, 5.998, 49.895 ], "heli_params": [ -1.352, -1.547, 3.124, 7.052, -6.965, 50.557 ], "bp2_params": [ 6.246, -2.303, -0.833, 3.221, 4.486, 9.547 ], "groove_widths": [ 15.667, null, 14.332, null ], "simple_Rise": 3.069, "simple_Twist": 11.866, "simple_hRise": 2.848, "simple_hTwist": 14.547 }, { "index": 4, "nt1": "///A/1886", "nt2": "///A/1914", "bp": "G-A", "name": "--", "Saenger": "--", "LW": ".SH", "DSSR": ".m-M", "bp1_params": [ 6.246, -2.303, -0.833, 3.221, 4.486, 9.547 ], "step_params": [ -1.071, -1.233, 2.554, 19.609, 0.238, 33.790 ], "heli_params": [ -1.871, 3.273, 1.697, 0.373, -30.737, 38.924 ], "bp2_params": [ 6.446, -8.083, -0.908, 31.316, -15.930, -34.688 ], "groove_widths": [ 18.244, null, 13.180, null ], "simple_Rise": 2.554, "simple_Twist": 10.192, "simple_hRise": 0.223, "simple_hTwist": 22.078 }, { "index": 5, "nt1": "///A/1887", "nt2": "///A/1913", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.446, -8.083, -0.908, 31.316, -15.930, -34.688 ], "step_params": [ 1.306, -2.049, 4.547, 13.320, 20.558, -8.958 ], "heli_params": [ -4.623, 8.835, 2.521, -58.927, 38.180, -26.059 ], "bp2_params": [ -6.258, -4.868, -1.292, -8.106, 23.648, -14.277 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.547, "simple_Twist": 97.535, "simple_hRise": 4.286, "simple_hTwist": 99.802 }, { "index": 6, "nt1": "///A/1888", "nt2": "///A/1912", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.258, -4.868, -1.292, -8.106, 23.648, -14.277 ], "step_params": [ 0.588, 0.316, 3.067, 8.630, 11.933, 86.250 ], "heli_params": [ -0.019, -0.247, 3.120, 8.674, -6.273, 87.255 ], "bp2_params": [ 1.129, -0.807, -0.089, 55.376, 8.919, 34.888 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.067, "simple_Twist": 31.645, "simple_hRise": 3.042, "simple_hTwist": 34.824 }, { "index": 7, "nt1": "///A/1890", "nt2": "///A/1911", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 63, "num_stems": 0, "strand1": "AAUGAAUA", "strand2": "UUCCGUGU", "bp_type": ".|.|.|.|", "helix_form": "x.A.xx.", "helical_rise": 3.091, "helical_rise_std": 1.076, "helical_radius": 10.332, "helical_radius_std": 2.790, "helical_axis": [ 0.135, -0.347, 0.928 ], "point1": [ 161.091, 161.308, 168.187 ], "point2": [ 163.972, 153.879, 188.053 ], "num_pairs": 8, "pairs": [ { "index": 1, "nt1": "///A/2059", "nt2": "///A/612", "bp": "A-U", "name": "--", "Saenger": "--", "LW": "cW.", "DSSR": "cW-.", "bp1_params": [ -6.250, -2.305, 1.868, -5.305, 12.750, 9.775 ], "step_params": [ 0.415, -2.178, 6.444, 5.217, 5.801, 71.552 ], "heli_params": [ -2.234, -0.012, 6.290, 4.947, -4.449, 71.919 ], "bp2_params": [ 0.099, -0.008, 0.312, 15.771, -4.427, -0.838 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 6.444, "simple_Twist": 32.816, "simple_hRise": 5.977, "simple_hTwist": 33.706 }, { "index": 2, "nt1": "///A/619", "nt2": "///A/610", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.099, -0.008, 0.312, 15.771, -4.427, -0.838 ], "step_params": [ -0.723, -2.034, 3.688, 5.195, 9.351, 28.264 ], "heli_params": [ -5.834, 2.460, 2.719, 18.340, -10.188, 30.182 ], "bp2_params": [ -1.406, -1.035, -0.497, 2.936, -24.625, -11.371 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.688, "simple_Twist": 36.851, "simple_hRise": 2.978, "simple_hTwist": 38.321 }, { "index": 3, "nt1": "///A/620", "nt2": "///A/609", "bp": "U-C", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.406, -1.035, -0.497, 2.936, -24.625, -11.371 ], "step_params": [ 0.534, -1.177, 3.620, 1.157, 17.267, 38.522 ], "heli_params": [ -3.499, -0.619, 2.875, 24.710, -1.655, 42.095 ], "bp2_params": [ -0.164, -0.149, -0.512, 2.304, 2.722, -0.173 ], "groove_widths": [ 20.231, null, 17.772, null ], "simple_Rise": 3.620, "simple_Twist": 31.179, "simple_hRise": 2.646, "simple_hTwist": 35.555 }, { "index": 4, "nt1": "///A/621", "nt2": "///A/608", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.164, -0.149, -0.512, 2.304, 2.722, -0.173 ], "step_params": [ -0.204, -0.646, 3.337, 6.421, 1.817, 30.182 ], "heli_params": [ -1.568, 1.640, 3.183, 3.437, -12.145, 30.894 ], "bp2_params": [ -0.378, 1.515, -0.745, 12.446, -4.254, -19.249 ], "groove_widths": [ 18.492, 17.142, 25.193, 24.973 ], "simple_Rise": 3.337, "simple_Twist": 31.060, "simple_hRise": 3.190, "simple_hTwist": 31.752 }, { "index": 5, "nt1": "///A/622", "nt2": "///A/607", "bp": "A-G", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.378, 1.515, -0.745, 12.446, -4.254, -19.249 ], "step_params": [ 1.547, -5.132, 3.780, -5.246, 21.602, -0.760 ], "heli_params": [ -9.232, -1.463, 5.479, -85.581, -20.782, -22.243 ], "bp2_params": [ -0.840, 0.459, -0.177, 2.240, -16.124, -2.069 ], "groove_widths": [ 17.496, null, 24.528, null ], "simple_Rise": 3.780, "simple_Twist": 1.693, "simple_hRise": -5.048, "simple_hTwist": 22.293 }, { "index": 6, "nt1": "///A/2047", "nt2": "///A/577", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.840, 0.459, -0.177, 2.240, -16.124, -2.069 ], "step_params": [ 0.080, -1.536, 3.383, 4.856, -3.381, 34.141 ], "heli_params": [ -2.029, 0.656, 3.493, -5.705, -8.195, 34.635 ], "bp2_params": [ -3.762, 1.045, -0.066, -8.237, -4.397, -25.523 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.383, "simple_Twist": 46.559, "simple_hRise": 3.472, "simple_hTwist": 46.913 }, { "index": 7, "nt1": "///A/2048", "nt2": "///A/2064", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -3.762, 1.045, -0.066, -8.237, -4.397, -25.523 ], "step_params": [ 1.995, -1.607, 3.570, -0.140, 4.685, 36.200 ], "heli_params": [ -3.253, -3.207, 3.336, 7.501, 0.225, 36.492 ], "bp2_params": [ 0.165, -0.070, -0.595, 0.574, 3.620, -8.524 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.570, "simple_Twist": 18.752, "simple_hRise": 3.065, "simple_hTwist": 19.324 }, { "index": 8, "nt1": "///A/2049", "nt2": "///A/2063", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 64, "num_stems": 2, "strand1": "GGAGCU", "strand2": "CCUCGA", "bp_type": "||||||", "helix_form": "Ax...", "helical_rise": 3.196, "helical_rise_std": 0.273, "helical_radius": 9.404, "helical_radius_std": 1.736, "helical_axis": [ 0.626, 0.757, -0.185 ], "point1": [ 188.258, 183.611, 173.409 ], "point2": [ 198.425, 195.902, 170.406 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/2098", "nt2": "///A/2471", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.213, -0.213, 0.668, 4.233, 2.497, 0.491 ], "step_params": [ -0.069, -1.858, 3.453, 5.297, 24.151, 37.789 ], "heli_params": [ -4.417, 0.526, 1.957, 33.300, -7.304, 44.911 ], "bp2_params": [ -0.216, -0.165, -0.494, -14.072, -12.175, 0.302 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.453, "simple_Twist": 37.697, "simple_hRise": 1.953, "simple_hTwist": 44.835 }, { "index": 2, "nt1": "///A/2099", "nt2": "///A/2470", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.216, -0.165, -0.494, -14.072, -12.175, 0.302 ], "step_params": [ 1.220, -1.259, 3.334, -12.703, -4.461, 22.595 ], "heli_params": [ -1.615, -5.980, 2.504, -10.295, 29.314, 26.257 ], "bp2_params": [ -2.570, 0.482, 0.561, -12.002, 0.516, 23.676 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.334, "simple_Twist": 36.148, "simple_hRise": 2.890, "simple_hTwist": 38.495 }, { "index": 3, "nt1": "///A/2100", "nt2": "///A/2467", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.570, 0.482, 0.561, -12.002, 0.516, 23.676 ], "step_params": [ -0.850, -1.019, 2.964, -4.806, 4.241, 39.151 ], "heli_params": [ -1.951, 0.744, 2.923, 6.277, 7.114, 39.652 ], "bp2_params": [ -0.141, -0.307, 0.985, -4.415, 3.235, 4.087 ], "groove_widths": [ 17.955, null, 17.288, null ], "simple_Rise": 2.964, "simple_Twist": 25.758, "simple_hRise": 2.871, "simple_hTwist": 26.530 }, { "index": 4, "nt1": "///A/2101", "nt2": "///A/2466", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.141, -0.307, 0.985, -4.415, 3.235, 4.087 ], "step_params": [ 0.735, -1.284, 2.710, -5.912, 3.942, 31.941 ], "heli_params": [ -2.815, -2.109, 2.369, 7.055, 10.580, 32.702 ], "bp2_params": [ 0.290, -0.222, 1.243, 15.532, -1.225, 16.043 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.710, "simple_Twist": 29.137, "simple_hRise": 2.329, "simple_hTwist": 29.973 }, { "index": 5, "nt1": "///A/2102", "nt2": "///A/2465", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.290, -0.222, 1.243, 15.532, -1.225, 16.043 ], "step_params": [ -0.281, 0.660, 2.076, 21.791, 6.534, 32.674 ], "heli_params": [ 0.489, 2.032, 1.678, 10.217, -34.074, 39.635 ], "bp2_params": [ 0.875, 0.280, -0.918, 58.636, -28.928, 21.128 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.076, "simple_Twist": 32.719, "simple_hRise": 1.679, "simple_hTwist": 39.672 }, { "index": 6, "nt1": "///A/2103", "nt2": "///A/2464", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 65, "num_stems": 3, "strand1": "ACUGCGCCGAUAU", "strand2": "UGACGGGGCUGUG", "bp_type": "|||||.|||||||", "helix_form": "....xx.x....", "helical_rise": 3.666, "helical_rise_std": 1.454, "helical_radius": 9.463, "helical_radius_std": 2.730, "helical_axis": [ 0.409, 0.865, 0.290 ], "point1": [ 192.534, 198.422, 162.706 ], "point2": [ 210.487, 236.413, 175.449 ], "num_pairs": 13, "pairs": [ { "index": 1, "nt1": "///A/2106", "nt2": "///A/2272", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.113, -0.219, 0.318, -15.654, -28.157, -16.901 ], "step_params": [ -1.314, -0.953, 3.464, -5.469, -4.873, 21.050 ], "heli_params": [ -0.378, 1.055, 3.801, -12.847, 14.418, 22.275 ], "bp2_params": [ 0.218, -0.021, -0.132, -18.427, -19.928, 9.994 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.464, "simple_Twist": 20.194, "simple_hRise": 3.806, "simple_hTwist": 21.468 }, { "index": 2, "nt1": "///A/2107", "nt2": "///A/2271", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.218, -0.021, -0.132, -18.427, -19.928, 9.994 ], "step_params": [ -1.455, 0.271, 3.409, -6.316, -1.010, 31.843 ], "heli_params": [ 0.676, 1.401, 3.613, -1.819, 11.368, 32.463 ], "bp2_params": [ 0.044, -0.174, -0.390, -6.419, -14.780, 2.569 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.409, "simple_Twist": 33.674, "simple_hRise": 3.605, "simple_hTwist": 34.258 }, { "index": 3, "nt1": "///A/2108", "nt2": "///A/2270", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.044, -0.174, -0.390, -6.419, -14.780, 2.569 ], "step_params": [ -0.675, -1.142, 3.772, -8.394, 9.816, 22.757 ], "heli_params": [ -5.528, -1.073, 3.084, 22.683, 19.395, 26.125 ], "bp2_params": [ -0.163, -0.281, -1.070, -11.300, -3.271, 1.697 ], "groove_widths": [ 19.181, null, 18.850, null ], "simple_Rise": 3.772, "simple_Twist": 23.631, "simple_hRise": 3.119, "simple_hTwist": 26.886 }, { "index": 4, "nt1": "///A/2109", "nt2": "///A/2269", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.163, -0.281, -1.070, -11.300, -3.271, 1.697 ], "step_params": [ 0.215, -1.301, 2.901, -6.786, 6.932, 30.250 ], "heli_params": [ -3.446, -1.438, 2.446, 12.874, 12.602, 31.733 ], "bp2_params": [ 0.171, -0.213, -0.604, 2.612, -8.459, 3.486 ], "groove_widths": [ 20.357, 14.546, 13.108, 12.895 ], "simple_Rise": 2.901, "simple_Twist": 28.348, "simple_hRise": 2.408, "simple_hTwist": 29.930 }, { "index": 5, "nt1": "///A/2110", "nt2": "///A/2268", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.171, -0.213, -0.604, 2.612, -8.459, 3.486 ], "step_params": [ -1.774, -0.130, 5.944, -10.776, 33.806, 56.854 ], "heli_params": [ -2.708, 0.798, 5.384, 32.302, 10.297, 66.225 ], "bp2_params": [ -5.808, -4.906, 1.478, -38.199, -36.430, 5.538 ], "groove_widths": [ 20.507, 13.504, 13.470, 13.292 ], "simple_Rise": 5.944, "simple_Twist": 103.370, "simple_hRise": 5.876, "simple_hTwist": 107.615 }, { "index": 6, "nt1": "///A/2112", "nt2": "///A/2266", "bp": "G-G", "name": "~Sheared", "Saenger": "--", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -5.808, -4.906, 1.478, -38.199, -36.430, 5.538 ], "step_params": [ -0.361, -0.588, 5.020, -32.846, -1.753, 66.539 ], "heli_params": [ -0.402, -1.387, 4.764, -1.507, 28.245, 73.378 ], "bp2_params": [ 0.097, -0.335, -0.859, -3.131, 3.970, -3.472 ], "groove_widths": [ 24.641, 12.195, 12.398, 12.372 ], "simple_Rise": 5.020, "simple_Twist": 20.749, "simple_hRise": 3.054, "simple_hTwist": 38.737 }, { "index": 7, "nt1": "///A/2113", "nt2": "///A/2264", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.097, -0.335, -0.859, -3.131, 3.970, -3.472 ], "step_params": [ 0.040, -1.802, 2.889, -8.224, 6.073, 30.572 ], "heli_params": [ -4.150, -1.292, 2.405, 11.133, 15.077, 32.197 ], "bp2_params": [ 0.235, -0.138, -0.036, 10.286, 2.578, 2.920 ], "groove_widths": [ 27.564, 12.067, 12.119, 12.083 ], "simple_Rise": 2.889, "simple_Twist": 29.585, "simple_hRise": 2.384, "simple_hTwist": 31.265 }, { "index": 8, "nt1": "///A/2114", "nt2": "///A/2263", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.235, -0.138, -0.036, 10.286, 2.578, 2.920 ], "step_params": [ -0.571, -5.034, 9.255, 7.209, 23.678, 76.262 ], "heli_params": [ -5.622, 0.960, 7.616, 18.715, -5.698, 79.593 ], "bp2_params": [ -0.118, -0.325, -1.116, -17.347, 0.123, -0.787 ], "groove_widths": [ 24.556, 12.688, 12.965, 12.089 ], "simple_Rise": 9.255, "simple_Twist": 78.701, "simple_hRise": 7.694, "simple_hTwist": 81.895 }, { "index": 9, "nt1": "///A/2116", "nt2": "///A/2261", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.118, -0.325, -1.116, -17.347, 0.123, -0.787 ], "step_params": [ -0.007, -1.499, 3.293, -3.126, 1.808, 32.429 ], "heli_params": [ -2.980, -0.528, 3.194, 3.224, 5.575, 32.624 ], "bp2_params": [ 0.112, -0.172, -0.952, -11.497, 12.406, -5.318 ], "groove_widths": [ 22.214, 12.542, 13.845, 12.507 ], "simple_Rise": 3.293, "simple_Twist": 30.867, "simple_hRise": 3.187, "simple_hTwist": 31.072 }, { "index": 10, "nt1": "///A/2117", "nt2": "///A/2260", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.112, -0.172, -0.952, -11.497, 12.406, -5.318 ], "step_params": [ 1.274, -1.430, 3.018, -2.315, 5.722, 40.237 ], "heli_params": [ -2.616, -2.059, 2.723, 8.259, 3.341, 40.688 ], "bp2_params": [ 2.013, 0.018, -0.357, 10.240, 15.880, 12.140 ], "groove_widths": [ 20.597, null, 16.485, null ], "simple_Rise": 3.018, "simple_Twist": 29.357, "simple_hRise": 2.593, "simple_hTwist": 29.985 }, { "index": 11, "nt1": "///A/2118", "nt2": "///A/2259", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.013, 0.018, -0.357, 10.240, 15.880, 12.140 ], "step_params": [ -0.342, -1.493, 3.752, 16.124, 39.749, 33.453 ], "heli_params": [ -4.046, 1.350, 1.214, 49.829, -20.213, 53.907 ], "bp2_params": [ 0.068, -0.351, -1.528, -12.403, -6.381, 3.330 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.752, "simple_Twist": 44.259, "simple_hRise": 1.779, "simple_hTwist": 60.873 }, { "index": 12, "nt1": "///A/2119", "nt2": "///A/2258", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.068, -0.351, -1.528, -12.403, -6.381, 3.330 ], "step_params": [ -0.988, -1.002, 3.101, -3.148, 0.595, 34.294 ], "heli_params": [ -1.782, 1.199, 3.159, 1.007, 5.325, 34.439 ], "bp2_params": [ 1.930, -0.608, -0.941, 0.115, -1.280, -13.064 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.101, "simple_Twist": 24.613, "simple_hRise": 3.176, "simple_hTwist": 24.817 }, { "index": 13, "nt1": "///A/2120", "nt2": "///A/2257", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 66, "num_stems": 1, "strand1": "GCCUU", "strand2": "CGGAG", "bp_type": "||...", "helix_form": "....", "helical_rise": 3.386, "helical_rise_std": 0.685, "helical_radius": 8.044, "helical_radius_std": 3.569, "helical_axis": [ 0.204, 0.581, 0.788 ], "point1": [ 230.069, 268.113, 106.865 ], "point2": [ 232.727, 275.678, 117.128 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/2156", "nt2": "///A/2190", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.041, -0.414, -1.296, -5.996, 4.403, -2.874 ], "step_params": [ 1.874, -0.470, 3.404, -4.081, 7.514, 25.145 ], "heli_params": [ -2.961, -5.134, 2.814, 16.656, 9.045, 26.537 ], "bp2_params": [ 0.185, -0.143, -0.309, 7.930, 6.521, 0.357 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.404, "simple_Twist": 23.614, "simple_hRise": 2.767, "simple_hTwist": 25.093 }, { "index": 2, "nt1": "///A/2157", "nt2": "///A/2189", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.185, -0.143, -0.309, 7.930, 6.521, 0.357 ], "step_params": [ 1.995, -2.241, 4.701, -2.519, -17.097, 37.682 ], "heli_params": [ -0.290, -3.252, 5.079, -24.930, 3.673, 41.325 ], "bp2_params": [ 5.921, -5.546, 1.076, -3.481, -42.730, -17.767 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.701, "simple_Twist": -5.819, "simple_hRise": -0.318, "simple_hTwist": -18.228 }, { "index": 3, "nt1": "///A/2158", "nt2": "///A/2188", "bp": "C-G", "name": "~Sheared", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 5.921, -5.546, 1.076, -3.481, -42.730, -17.767 ], "step_params": [ 4.168, 2.277, 4.407, 8.775, -25.360, 48.519 ], "heli_params": [ 4.437, -3.827, 3.557, -28.484, -9.855, 55.050 ], "bp2_params": [ 5.934, -2.841, -2.334, -25.000, 53.011, 44.712 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.407, "simple_Twist": 44.537, "simple_hRise": 3.445, "simple_hTwist": 51.643 }, { "index": 4, "nt1": "///A/2159", "nt2": "///A/2187", "bp": "U-A", "name": "--", "Saenger": "--", "LW": ".SH", "DSSR": ".m-M", "bp1_params": [ 5.934, -2.841, -2.334, -25.000, 53.011, 44.712 ], "step_params": [ -0.860, -0.942, 6.818, -59.799, -9.403, -35.055 ], "heli_params": [ 1.558, -5.382, 2.776, 9.740, -61.943, -69.109 ], "bp2_params": [ 3.899, 3.338, -0.935, -18.768, 69.529, 116.559 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 6.818, "simple_Twist": -25.835, "simple_hRise": 1.917, "simple_hTwist": -65.333 }, { "index": 5, "nt1": "///A/2160", "nt2": "///A/2186", "bp": "U-G", "name": "--", "Saenger": "--", "LW": ".SW", "DSSR": ".m-W" } ] }, { "index": 67, "num_stems": 0, "strand1": "GG", "strand2": "AA", "bp_type": "..", "helix_form": "x", "helical_rise": 1.870, "helical_rise_std": 0.126, "helical_radius": 5.693, "helical_radius_std": 4.311, "helical_axis": [ -0.399, 0.879, 0.261 ], "point1": [ 241.073, 265.553, 112.333 ], "point2": [ 240.314, 267.225, 112.829 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/2162", "nt2": "///A/2165", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cHH", "DSSR": "cM-M", "bp1_params": [ 4.913, -5.171, 0.328, 59.306, -1.591, 162.208 ], "step_params": [ -3.022, -0.398, 3.266, -16.629, -6.887, -39.521 ], "heli_params": [ 1.089, -5.425, 1.819, 9.604, -23.190, -43.277 ], "bp2_params": [ 6.438, -4.315, -1.014, 12.239, 2.474, -5.990 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.266, "simple_Twist": 64.762, "simple_hRise": 3.876, "simple_hTwist": 66.954 }, { "index": 2, "nt1": "///A/2185", "nt2": "///A/2164", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 68, "num_stems": 1, "strand1": "CGGGC", "strand2": "GCUCG", "bp_type": ".|.||", "helix_form": ".xx.", "helical_rise": 2.354, "helical_rise_std": 0.295, "helical_radius": 9.479, "helical_radius_std": 2.268, "helical_axis": [ 0.525, -0.659, 0.538 ], "point1": [ 236.702, 260.682, 122.741 ], "point2": [ 241.559, 254.583, 127.724 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/2167", "nt2": "///A/2182", "bp": "C-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.691, 5.485, -1.311, -31.113, 53.900, 90.969 ], "step_params": [ -2.321, -3.697, 3.610, 22.557, 5.986, -1.705 ], "heli_params": [ 4.968, 9.905, 3.448, -22.029, 83.006, -23.399 ], "bp2_params": [ -0.144, -0.172, -0.402, -12.102, -2.153, 2.079 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.610, "simple_Twist": 7.685, "simple_hRise": -1.891, "simple_hTwist": 24.553 }, { "index": 2, "nt1": "///A/2168", "nt2": "///A/2181", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.144, -0.172, -0.402, -12.102, -2.153, 2.079 ], "step_params": [ 3.369, -2.594, 2.799, 8.901, 39.760, 71.520 ], "heli_params": [ -2.779, -2.420, 1.739, 31.650, -7.085, 80.945 ], "bp2_params": [ 2.285, 0.015, -0.336, -5.129, -16.407, -25.744 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.799, "simple_Twist": 59.449, "simple_hRise": 1.456, "simple_hTwist": 71.003 }, { "index": 3, "nt1": "///A/2169", "nt2": "///A/2179", "bp": "G-U", "name": "sWobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.285, 0.015, -0.336, -5.129, -16.407, -25.744 ], "step_params": [ 0.104, -1.356, 4.074, 13.120, 13.664, 44.611 ], "heli_params": [ -2.939, 1.102, 3.444, 17.116, -16.435, 48.276 ], "bp2_params": [ -0.002, -0.535, 1.465, 6.284, -6.865, -2.848 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.074, "simple_Twist": 56.099, "simple_hRise": 3.625, "simple_hTwist": 58.964 }, { "index": 4, "nt1": "///A/2171", "nt2": "///A/2178", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.002, -0.535, 1.465, 6.284, -6.865, -2.848 ], "step_params": [ 2.831, -1.954, 3.028, 0.698, -7.398, 8.115 ], "heli_params": [ 3.421, -13.484, 3.727, -42.359, -3.994, 10.999 ], "bp2_params": [ 0.215, -0.316, 0.914, 16.166, 2.652, 5.180 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.028, "simple_Twist": 6.174, "simple_hRise": 3.636, "simple_hTwist": 9.659 }, { "index": 5, "nt1": "///A/2172", "nt2": "///A/2177", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 69, "num_stems": 1, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": ".", "helical_rise": 3.259, "helical_rise_std": 0.085, "helical_radius": 9.080, "helical_radius_std": 0.810, "helical_axis": [ -0.748, -0.632, -0.202 ], "point1": [ 199.524, 176.277, 131.238 ], "point2": [ 197.088, 174.221, 130.581 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/2289", "nt2": "///A/2309", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.145, -0.151, 0.030, 0.408, 0.364, 0.196 ], "step_params": [ -0.368, -1.105, 3.251, -6.927, -0.811, 34.433 ], "heli_params": [ -1.710, -0.436, 3.285, -1.353, 11.554, 35.111 ], "bp2_params": [ 0.118, -0.254, 0.709, -0.801, -5.995, -2.453 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.251, "simple_Twist": 34.745, "simple_hRise": 3.285, "simple_hTwist": 35.417 }, { "index": 2, "nt1": "///A/2290", "nt2": "///A/2308", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 70, "num_stems": 0, "strand1": "UUCCC", "strand2": "CGAGG", "bp_type": "....|", "helix_form": "...x", "helical_rise": 4.195, "helical_rise_std": 0.416, "helical_radius": 9.045, "helical_radius_std": 1.231, "helical_axis": [ 0.074, -0.764, -0.641 ], "point1": [ 195.515, 191.769, 98.394 ], "point2": [ 196.794, 178.585, 87.334 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/2320", "nt2": "///A/2371", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.157, -1.266, 1.762, -48.921, 35.793, -15.763 ], "step_params": [ 2.218, -1.704, 2.932, 1.787, 9.836, 63.568 ], "heli_params": [ -1.968, -2.018, 2.725, 9.276, -1.685, 64.268 ], "bp2_params": [ -0.580, 3.129, 0.897, 2.652, 46.133, -61.618 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.932, "simple_Twist": 6.536, "simple_hRise": 0.536, "simple_hTwist": 11.940 }, { "index": 2, "nt1": "///A/2321", "nt2": "///A/2370", "bp": "U+G", "name": "~Hoogsteen", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "bp1_params": [ -0.580, 3.129, 0.897, 2.652, 46.133, -61.618 ], "step_params": [ -0.236, 0.966, 3.075, 4.492, 15.057, -17.080 ], "heli_params": [ -6.812, 0.728, 1.696, -41.108, 12.263, -23.168 ], "bp2_params": [ -0.433, -0.554, 1.143, -4.310, 53.492, 20.937 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.075, "simple_Twist": 25.626, "simple_hRise": 3.078, "simple_hTwist": 29.990 }, { "index": 3, "nt1": "///A/2322", "nt2": "///A/2369", "bp": "C-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.433, -0.554, 1.143, -4.310, 53.492, 20.937 ], "step_params": [ 1.294, -0.305, 2.164, 17.195, -4.580, 97.888 ], "heli_params": [ -0.150, -0.659, 2.322, -3.019, -11.333, 99.084 ], "bp2_params": [ 2.036, -1.987, -1.748, 67.108, -31.922, -101.918 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.164, "simple_Twist": 7.736, "simple_hRise": 2.085, "simple_hTwist": 19.391 }, { "index": 4, "nt1": "///A/2323", "nt2": "///A/2368", "bp": "C+G", "name": "--", "Saenger": "--", "LW": ".WW", "DSSR": ".W+W", "bp1_params": [ 2.036, -1.987, -1.748, 67.108, -31.922, -101.918 ], "step_params": [ 2.624, -2.138, 5.785, 16.770, 15.137, -24.468 ], "heli_params": [ -0.649, 9.463, 3.948, -29.017, 32.148, -33.185 ], "bp2_params": [ -0.130, -0.436, -1.237, 17.140, 11.430, -13.550 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 5.785, "simple_Twist": 63.126, "simple_hRise": 5.668, "simple_hTwist": 66.651 }, { "index": 5, "nt1": "///A/2324", "nt2": "///A/2366", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 71, "num_stems": 0, "strand1": "CAAU", "strand2": "GCUA", "bp_type": "|.||", "helix_form": "xxx", "helical_rise": 5.450, "helical_rise_std": 2.605, "helical_radius": 8.283, "helical_radius_std": 2.821, "helical_axis": [ 0.840, -0.472, -0.267 ], "point1": [ 200.697, 163.816, 94.594 ], "point2": [ 214.683, 155.967, 90.149 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/2326", "nt2": "///A/2350", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.052, -0.348, 0.165, 25.252, 23.676, -1.252 ], "step_params": [ 3.366, -1.806, 5.407, 12.352, -23.195, 57.241 ], "heli_params": [ 0.236, -2.191, 6.213, -22.933, -12.213, 62.518 ], "bp2_params": [ -4.839, -4.618, -2.384, -20.055, -48.776, -63.947 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 5.407, "simple_Twist": 101.307, "simple_hRise": 5.898, "simple_hTwist": 103.745 }, { "index": 2, "nt1": "///A/2327", "nt2": "///A/2346", "bp": "A-C", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.839, -4.618, -2.384, -20.055, -48.776, -63.947 ], "step_params": [ 2.064, -1.901, 5.956, -15.132, -4.772, 91.188 ], "heli_params": [ -1.155, -1.951, 5.716, -3.320, 10.527, 92.257 ], "bp2_params": [ 0.011, -0.146, 0.458, -4.681, -2.224, -8.176 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 5.956, "simple_Twist": 58.946, "simple_hRise": 5.455, "simple_hTwist": 60.859 }, { "index": 3, "nt1": "///A/2329", "nt2": "///A/2344", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.011, -0.146, 0.458, -4.681, -2.224, -8.176 ], "step_params": [ -1.042, -2.068, 3.664, 3.720, 12.375, 60.313 ], "heli_params": [ -2.633, 1.202, 3.164, 12.166, -3.657, 61.554 ], "bp2_params": [ 0.050, -1.072, 1.901, 16.565, 19.683, 19.315 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.664, "simple_Twist": 59.368, "simple_hRise": 3.153, "simple_hTwist": 60.633 }, { "index": 4, "nt1": "///A/2331", "nt2": "///A/2343", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 72, "num_stems": 1, "strand1": "CUGC", "strand2": "GAAG", "bp_type": "||.|", "helix_form": ".xx", "helical_rise": 3.360, "helical_rise_std": 0.660, "helical_radius": 9.668, "helical_radius_std": 3.597, "helical_axis": [ -0.546, -0.162, 0.822 ], "point1": [ 180.488, 200.078, 104.714 ], "point2": [ 174.763, 198.384, 113.333 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/2376", "nt2": "///A/2399", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.174, -0.286, -0.512, -1.318, 4.676, -1.984 ], "step_params": [ 0.335, -1.165, 2.945, 0.492, 5.353, 28.947 ], "heli_params": [ -3.288, -0.567, 2.695, 10.594, -0.974, 29.432 ], "bp2_params": [ -0.022, -0.186, -0.496, 1.668, -0.296, -1.989 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.945, "simple_Twist": 30.703, "simple_hRise": 2.712, "simple_hTwist": 31.159 }, { "index": 2, "nt1": "///A/2377", "nt2": "///A/2398", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.022, -0.186, -0.496, 1.668, -0.296, -1.989 ], "step_params": [ -2.404, -2.765, 3.129, 0.310, 29.596, 48.679 ], "heli_params": [ -4.165, 2.553, 1.353, 32.658, -0.342, 56.499 ], "bp2_params": [ 2.325, -3.542, 1.983, -4.377, 10.305, -74.262 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.129, "simple_Twist": -45.733, "simple_hRise": 4.122, "simple_hTwist": -54.040 }, { "index": 3, "nt1": "///A/2378", "nt2": "///A/690", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "tSW", "DSSR": "tm+W", "bp1_params": [ 2.325, -3.542, 1.983, -4.377, 10.305, -74.262 ], "step_params": [ 4.880, -3.763, 5.020, 1.837, 11.637, 9.831 ], "heli_params": [ -24.434, -16.659, 0.959, 49.673, -7.843, 15.333 ], "bp2_params": [ 0.290, -0.465, -1.337, 1.803, -4.165, 4.868 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 5.020, "simple_Twist": 102.330, "simple_hRise": 4.760, "simple_hTwist": 102.816 }, { "index": 4, "nt1": "///A/2379", "nt2": "///A/2396", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 73, "num_stems": 1, "strand1": "ACC", "strand2": "UGA", "bp_type": "||.", "helix_form": "..", "helical_rise": 0.730, "helical_rise_std": 0.479, "helical_axis": [ -0.687, -0.681, 0.252 ], "point1": [ null, null, null ], "point2": [ null, null, null ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/2383", "nt2": "///A/2392", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.534, -0.311, -2.468, -40.854, -3.582, -8.377 ], "step_params": [ 1.181, -1.251, 3.475, -14.215, 4.530, 15.554 ], "heli_params": [ -4.959, -8.215, 1.481, 13.378, 41.977, 21.521 ], "bp2_params": [ 0.189, -0.194, -0.656, -30.560, 9.858, -3.872 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.475, "simple_Twist": 18.226, "simple_hRise": 1.754, "simple_hTwist": 23.514 }, { "index": 2, "nt1": "///A/2384", "nt2": "///A/2391", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.189, -0.194, -0.656, -30.560, 9.858, -3.872 ], "step_params": [ 0.234, -0.878, 2.930, -6.296, 12.681, 53.257 ], "heli_params": [ -1.604, -0.578, 2.633, 13.871, 6.886, 54.974 ], "bp2_params": [ 5.169, -1.111, 1.295, -19.717, 49.609, 1.388 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.930, "simple_Twist": 27.497, "simple_hRise": 2.216, "simple_hTwist": 30.865 }, { "index": 3, "nt1": "///A/2385", "nt2": "///A/2390", "bp": "C-A", "name": "--", "Saenger": "--", "LW": ".WW", "DSSR": ".W-W" } ] }, { "index": 74, "num_stems": 0, "strand1": "GG", "strand2": "GC", "bp_type": "..", "helix_form": ".", "helical_rise": 0.294, "helical_rise_std": 0.138, "helical_axis": [ 0.932, -0.362, -0.032 ], "point1": [ null, null, null ], "point2": [ null, null, null ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/2425", "nt2": "///A/2450", "bp": "G+G", "name": "--", "Saenger": "06-VI", "LW": "cWH", "DSSR": "cW+M", "bp1_params": [ -0.792, 4.422, 1.504, -45.115, 0.682, -81.635 ], "step_params": [ -0.960, 4.174, 1.866, -2.310, -20.923, -52.712 ], "heli_params": [ -3.471, -1.118, 3.150, 22.572, -2.492, -56.479 ], "bp2_params": [ 7.524, -1.562, 0.468, -48.170, -33.186, -79.406 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 1.866, "simple_Twist": 30.565, "simple_hRise": -0.696, "simple_hTwist": 36.969 }, { "index": 2, "nt1": "///A/2426", "nt2": "///A/2449", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M" } ] }, { "index": 75, "num_stems": 0, "strand1": "UGU", "strand2": "UAC", "bp_type": "...", "helix_form": "x.", "helical_rise": 0.775, "helical_rise_std": 0.464, "helical_axis": [ -0.475, -0.876, 0.081 ], "point1": [ null, null, null ], "point2": [ null, null, null ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/2427", "nt2": "///A/2448", "bp": "U-U", "name": "--", "Saenger": "16-XVI", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.101, -1.196, -1.513, 24.361, 36.222, 36.452 ], "step_params": [ -1.540, 3.030, 7.090, 28.213, 24.145, 30.350 ], "heli_params": [ -0.820, 7.251, 5.207, 33.857, -39.561, 47.618 ], "bp2_params": [ -1.955, 3.149, 0.245, 20.334, 39.839, 70.918 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 7.090, "simple_Twist": 27.747, "simple_hRise": 4.978, "simple_hTwist": 46.061 }, { "index": 2, "nt1": "///A/2429", "nt2": "///A/2447", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.955, 3.149, 0.245, 20.334, 39.839, 70.918 ], "step_params": [ -0.732, 4.070, 3.457, 6.114, 38.243, 11.388 ], "heli_params": [ -2.821, 2.458, 4.733, 73.304, -11.720, 40.306 ], "bp2_params": [ 0.544, -1.981, -0.396, -25.703, 14.230, 0.590 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.457, "simple_Twist": -2.810, "simple_hRise": -3.637, "simple_hTwist": -38.826 }, { "index": 3, "nt1": "///A/2430", "nt2": "///A/2446", "bp": "U-C", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 76, "num_stems": 1, "strand1": "CCG", "strand2": "GGA", "bp_type": "||.", "helix_form": "A.", "helical_rise": 2.773, "helical_rise_std": 0.204, "helical_radius": 9.449, "helical_radius_std": 1.377, "helical_axis": [ -0.502, 0.865, 0.026 ], "point1": [ 180.532, 223.654, 126.606 ], "point2": [ 177.692, 228.545, 126.751 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/2432", "nt2": "///A/2443", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.028, -0.268, -0.907, -10.439, -2.692, -3.174 ], "step_params": [ 0.567, -2.069, 2.982, -1.425, 13.034, 28.658 ], "heli_params": [ -5.709, -1.253, 1.858, 24.761, 2.707, 31.458 ], "bp2_params": [ 0.160, -0.190, -0.185, -4.834, 14.180, -0.327 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.982, "simple_Twist": 27.657, "simple_hRise": 1.813, "simple_hTwist": 30.553 }, { "index": 2, "nt1": "///A/2433", "nt2": "///A/2442", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.160, -0.190, -0.185, -4.834, 14.180, -0.327 ], "step_params": [ -0.117, -1.387, 2.717, 2.481, 11.281, 55.478 ], "heli_params": [ -1.965, 0.234, 2.410, 11.974, -2.634, 56.574 ], "bp2_params": [ 6.531, -3.070, 0.522, 9.233, 14.700, -2.020 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.717, "simple_Twist": 15.890, "simple_hRise": 1.397, "simple_hTwist": 19.623 }, { "index": 3, "nt1": "///A/2434", "nt2": "///A/2441", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 77, "num_stems": 0, "strand1": "CU", "strand2": "GG", "bp_type": "|.", "helix_form": ".", "helical_rise": 4.208, "helical_rise_std": 0.002, "helical_radius": 9.082, "helical_radius_std": 0.827, "helical_axis": [ 0.547, -0.808, -0.220 ], "point1": [ 220.535, 161.529, 148.280 ], "point2": [ 222.837, 158.131, 147.353 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/2490", "nt2": "///A/2519", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.217, -0.341, -0.957, -29.887, -5.005, 6.504 ], "step_params": [ -0.294, -0.573, 4.460, -12.951, 2.277, 34.560 ], "heli_params": [ -1.330, -1.951, 4.251, 3.672, 20.887, 36.906 ], "bp2_params": [ -1.036, -0.139, 0.307, -39.468, 13.572, 0.194 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.460, "simple_Twist": 42.950, "simple_hRise": 4.336, "simple_hTwist": 44.827 }, { "index": 2, "nt1": "///A/2491", "nt2": "///A/2518", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 78, "num_stems": 0, "strand1": "CC", "strand2": "AG", "bp_type": ".|", "helix_form": ".", "helical_rise": 0.196, "helical_rise_std": 0.070, "helical_axis": [ -0.420, -0.859, -0.293 ], "point1": [ null, null, null ], "point2": [ null, null, null ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/2493", "nt2": "///A/2517", "bp": "C-A", "name": "~Wobble", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.840, -0.942, -0.872, -30.702, -3.841, -9.895 ], "step_params": [ -0.999, -0.040, 2.791, -0.778, 9.476, 1.801 ], "heli_params": [ -16.639, 4.575, 0.561, 79.033, 6.486, 9.677 ], "bp2_params": [ 0.171, -0.378, -1.045, -2.683, 6.199, 0.446 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.791, "simple_Twist": 11.523, "simple_hRise": 2.183, "simple_hTwist": 14.929 }, { "index": 2, "nt1": "///A/2494", "nt2": "///A/2516", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 79, "num_stems": 1, "strand1": "AUCGC", "strand2": "UGGCG", "bp_type": "|||||", "helix_form": "....", "helical_rise": 3.472, "helical_rise_std": 0.275, "helical_radius": 10.095, "helical_radius_std": 1.378, "helical_axis": [ 0.310, -0.930, -0.198 ], "point1": [ 192.844, 141.346, 186.818 ], "point2": [ 197.207, 128.266, 184.026 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/2542", "nt2": "///A/2600", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.257, -0.383, -1.741, -15.964, -9.679, -3.032 ], "step_params": [ -0.653, -1.353, 3.550, -7.285, -0.298, 21.978 ], "heli_params": [ -3.255, -1.210, 3.594, -0.757, 18.466, 23.142 ], "bp2_params": [ 1.071, -0.580, -1.107, -4.831, -1.766, -8.376 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.550, "simple_Twist": 17.711, "simple_hRise": 3.554, "simple_hTwist": 19.142 }, { "index": 2, "nt1": "///A/2543", "nt2": "///A/2599", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.071, -0.580, -1.107, -4.831, -1.766, -8.376 ], "step_params": [ 0.078, -1.059, 3.262, -3.909, 5.943, 34.840 ], "heli_params": [ -2.578, -0.682, 3.020, 9.800, 6.446, 35.536 ], "bp2_params": [ 0.172, -0.188, 0.031, -2.491, -7.398, 0.560 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.262, "simple_Twist": 39.981, "simple_hRise": 3.059, "simple_hTwist": 40.584 }, { "index": 3, "nt1": "///A/2544", "nt2": "///A/2598", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.172, -0.188, 0.031, -2.491, -7.398, 0.560 ], "step_params": [ -1.142, -1.839, 2.907, -9.546, 8.748, 29.771 ], "heli_params": [ -4.630, 0.588, 2.519, 16.102, 17.571, 32.406 ], "bp2_params": [ -0.164, -0.216, 0.661, -4.083, -7.932, -3.258 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.907, "simple_Twist": 31.618, "simple_hRise": 2.552, "simple_hTwist": 34.104 }, { "index": 4, "nt1": "///A/2545", "nt2": "///A/2597", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.164, -0.216, 0.661, -4.083, -7.932, -3.258 ], "step_params": [ 0.401, -1.709, 3.382, -2.310, 1.569, 22.898 ], "heli_params": [ -4.828, -1.819, 3.203, 3.933, 5.790, 23.066 ], "bp2_params": [ 0.087, -0.248, 0.780, 1.306, -4.579, -4.112 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.382, "simple_Twist": 21.348, "simple_hRise": 3.188, "simple_hTwist": 21.528 }, { "index": 5, "nt1": "///A/2546", "nt2": "///A/2596", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 80, "num_stems": 3, "strand1": "UCGGGGAUCCAAUGGGCU", "strand2": "GGUCCCAGGGUUACCCGC", "bp_type": ".|||||.|||..|||||.", "helix_form": ".....xx..xxx.....", "helical_rise": 2.224, "helical_rise_std": 1.487, "helical_radius": 12.537, "helical_radius_std": 5.222, "helical_axis": [ -0.281, 0.924, 0.260 ], "point1": [ 213.638, 111.144, 184.780 ], "point2": [ 203.124, 145.683, 194.519 ], "num_pairs": 18, "pairs": [ { "index": 1, "nt1": "///A/2557", "nt2": "///A/2564", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 4.035, -1.417, -0.133, 3.879, 2.904, 8.613 ], "step_params": [ 0.731, 1.288, 3.226, 1.592, -2.661, 54.547 ], "heli_params": [ 1.560, -0.702, 3.184, -2.901, -1.736, 54.629 ], "bp2_params": [ 0.171, -0.162, -0.352, 3.595, 4.917, 0.451 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.226, "simple_Twist": 31.734, "simple_hRise": 3.143, "simple_hTwist": 31.882 }, { "index": 2, "nt1": "///A/2556", "nt2": "///A/2565", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.171, -0.162, -0.352, 3.595, 4.917, 0.451 ], "step_params": [ 0.924, 1.483, 2.943, 0.044, -3.829, 35.197 ], "heli_params": [ 2.933, -1.515, 2.773, -6.309, -0.072, 35.398 ], "bp2_params": [ -0.933, -0.585, -0.386, -5.804, 1.123, -13.284 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.943, "simple_Twist": 29.347, "simple_hRise": 2.733, "simple_hTwist": 29.591 }, { "index": 3, "nt1": "///A/2555", "nt2": "///A/2566", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.933, -0.585, -0.386, -5.804, 1.123, -13.284 ], "step_params": [ -0.950, 1.669, 3.285, -3.121, -3.341, 31.506 ], "heli_params": [ 3.649, 1.167, 3.172, -6.112, 5.711, 31.828 ], "bp2_params": [ -0.175, -0.207, -0.600, -2.738, -3.769, -0.801 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.285, "simple_Twist": 35.442, "simple_hRise": 3.189, "simple_hTwist": 35.727 }, { "index": 4, "nt1": "///A/2554", "nt2": "///A/2567", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.175, -0.207, -0.600, -2.738, -3.769, -0.801 ], "step_params": [ 0.443, 3.499, 3.218, 7.075, -6.407, 18.863 ], "heli_params": [ 11.794, 1.273, 1.973, -18.122, -20.013, 21.121 ], "bp2_params": [ -0.093, -0.185, 0.453, -1.189, -2.183, -3.007 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.218, "simple_Twist": 18.896, "simple_hRise": 1.975, "simple_hTwist": 21.150 }, { "index": 5, "nt1": "///A/2553", "nt2": "///A/2568", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.093, -0.185, 0.453, -1.189, -2.183, -3.007 ], "step_params": [ -0.499, 1.685, 2.931, -8.156, -6.516, 33.734 ], "heli_params": [ 3.619, -0.227, 2.617, -10.908, 13.654, 35.267 ], "bp2_params": [ -0.168, -0.190, -0.277, -3.468, -6.181, 1.012 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.931, "simple_Twist": 33.594, "simple_hRise": 2.615, "simple_hTwist": 35.134 }, { "index": 6, "nt1": "///A/2552", "nt2": "///A/2569", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.168, -0.190, -0.277, -3.468, -6.181, 1.012 ], "step_params": [ -0.303, 0.397, 3.105, 0.967, -13.020, 31.989 ], "heli_params": [ 2.545, 0.651, 2.732, -22.490, -1.671, 34.486 ], "bp2_params": [ -6.195, -1.834, 0.961, -4.528, 1.369, 37.124 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.105, "simple_Twist": -9.402, "simple_hRise": 2.158, "simple_hTwist": -16.077 }, { "index": 7, "nt1": "///A/2794", "nt2": "///A/2570", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cWS", "DSSR": "cW-m", "bp1_params": [ -6.195, -1.834, 0.961, -4.528, 1.369, 37.124 ], "step_params": [ 4.064, 3.093, 2.645, -36.221, -15.239, 22.469 ], "heli_params": [ 3.960, -5.121, -2.913, -23.803, 56.576, 45.044 ], "bp2_params": [ 2.692, -0.648, 0.056, 1.331, 0.707, 1.182 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.645, "simple_Twist": 79.547, "simple_hRise": 0.600, "simple_hTwist": 87.256 }, { "index": 8, "nt1": "///A/2551", "nt2": "///A/2572", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.692, -0.648, 0.056, 1.331, 0.707, 1.182 ], "step_params": [ -0.001, 1.040, 3.613, 3.678, -1.505, 37.864 ], "heli_params": [ 1.805, 0.514, 3.555, -2.312, -5.648, 38.064 ], "bp2_params": [ 0.161, -0.115, 0.404, 1.669, 1.639, 1.322 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.613, "simple_Twist": 24.114, "simple_hRise": 3.503, "simple_hTwist": 24.435 }, { "index": 9, "nt1": "///A/2550", "nt2": "///A/2573", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.161, -0.115, 0.404, 1.669, 1.639, 1.322 ], "step_params": [ -0.608, 1.820, 2.978, -2.808, -0.765, 32.744 ], "heli_params": [ 3.336, 0.637, 2.976, -1.353, 4.969, 32.869 ], "bp2_params": [ 0.179, -0.122, 0.069, -3.387, -2.615, 1.736 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.978, "simple_Twist": 32.981, "simple_hRise": 2.976, "simple_hTwist": 33.106 }, { "index": 10, "nt1": "///A/2549", "nt2": "///A/2574", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.179, -0.122, 0.069, -3.387, -2.615, 1.736 ], "step_params": [ 2.316, 0.335, 2.699, -30.759, -15.366, -101.131 ], "heli_params": [ -0.014, 1.063, 3.148, 9.756, -19.529, -105.281 ], "bp2_params": [ 2.549, 8.074, -0.280, 2.281, 16.640, 121.309 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.699, "simple_Twist": -41.225, "simple_hRise": 3.495, "simple_hTwist": -53.198 }, { "index": 11, "nt1": "///A/2594", "nt2": "///A/2575", "bp": "A+U", "name": "--", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "bp1_params": [ 2.549, 8.074, -0.280, 2.281, 16.640, 121.309 ], "step_params": [ 8.463, 3.613, 3.962, 49.615, -5.752, 159.869 ], "heli_params": [ 1.848, -4.125, 4.548, -2.915, -25.147, 161.768 ], "bp2_params": [ -3.007, -0.857, -0.633, -7.888, -15.515, -98.261 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.962, "simple_Twist": 115.753, "simple_hRise": 5.878, "simple_hTwist": 122.364 }, { "index": 12, "nt1": "///A/2595", "nt2": "///A/2591", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -3.007, -0.857, -0.633, -7.888, -15.515, -98.261 ], "step_params": [ 3.623, -3.130, 3.406, 2.182, 11.113, 51.633 ], "heli_params": [ -4.220, -3.938, 2.863, 12.587, -2.471, 52.777 ], "bp2_params": [ -1.004, 0.287, -0.112, -1.523, 12.509, -3.031 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.406, "simple_Twist": 39.759, "simple_hRise": 2.661, "simple_hTwist": 41.278 }, { "index": 13, "nt1": "///A/2576", "nt2": "///A/2590", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.004, 0.287, -0.112, -1.523, 12.509, -3.031 ], "step_params": [ -0.048, -0.861, 3.724, 0.935, 9.406, 36.110 ], "heli_params": [ -2.726, 0.212, 3.400, 14.863, -1.477, 37.287 ], "bp2_params": [ -0.205, -0.093, -0.383, -2.447, -6.573, 1.070 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.724, "simple_Twist": 31.985, "simple_hRise": 3.341, "simple_hTwist": 33.318 }, { "index": 14, "nt1": "///A/2577", "nt2": "///A/2589", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.205, -0.093, -0.383, -2.447, -6.573, 1.070 ], "step_params": [ 0.632, -1.855, 3.078, 0.400, 8.291, 27.424 ], "heli_params": [ -5.368, -1.201, 2.432, 17.001, -0.819, 28.630 ], "bp2_params": [ -0.195, -0.148, -0.421, 1.222, 3.083, -1.182 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.078, "simple_Twist": 27.362, "simple_hRise": 2.431, "simple_hTwist": 28.571 }, { "index": 15, "nt1": "///A/2578", "nt2": "///A/2588", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.195, -0.148, -0.421, 1.222, 3.083, -1.182 ], "step_params": [ -0.074, -1.769, 3.092, -1.956, 6.166, 34.262 ], "heli_params": [ -3.796, -0.143, 2.742, 10.352, 3.283, 34.850 ], "bp2_params": [ -0.204, -0.174, -0.411, 1.759, 4.532, -0.307 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.092, "simple_Twist": 34.322, "simple_hRise": 2.742, "simple_hTwist": 34.909 }, { "index": 16, "nt1": "///A/2579", "nt2": "///A/2587", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.204, -0.174, -0.411, 1.759, 4.532, -0.307 ], "step_params": [ 1.178, -2.551, 3.781, -0.063, 1.789, 29.141 ], "heli_params": [ -5.502, -2.352, 3.619, 3.552, 0.125, 29.195 ], "bp2_params": [ 0.205, -0.225, 0.623, 5.335, 4.827, 3.523 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.781, "simple_Twist": 26.794, "simple_hRise": 3.603, "simple_hTwist": 26.853 }, { "index": 17, "nt1": "///A/2580", "nt2": "///A/2586", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.205, -0.225, 0.623, 5.335, 4.827, 3.523 ], "step_params": [ -2.180, -2.793, 4.745, 24.153, 37.264, 50.018 ], "heli_params": [ -4.263, 3.103, 1.465, 36.917, -23.928, 65.922 ], "bp2_params": [ 4.478, -1.894, -0.833, -15.398, 5.442, -43.972 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.745, "simple_Twist": 27.298, "simple_hRise": -0.405, "simple_hTwist": 51.762 }, { "index": 18, "nt1": "///A/2581", "nt2": "///A/2585", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M" } ] }, { "index": 81, "num_stems": 3, "strand1": "CCUCCGUCGCGGGCG", "strand2": "GGAGGCAGCGCCCGA", "bp_type": "||||||||||||||.", "helix_form": ".xAAx..AA.AAxx", "helical_rise": 3.068, "helical_rise_std": 1.441, "helical_radius": 10.572, "helical_radius_std": 4.053, "helical_axis": [ -0.222, -0.874, 0.433 ], "point1": [ 174.567, 161.666, 190.118 ], "point2": [ 164.998, 124.032, 208.750 ], "num_pairs": 15, "pairs": [ { "index": 1, "nt1": "///A/2640", "nt2": "///A/2086", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.173, -0.463, -1.415, 4.964, -1.260, 3.934 ], "step_params": [ 0.672, -0.984, 3.650, 3.048, 1.154, 30.958 ], "heli_params": [ -2.081, -0.600, 3.659, 2.154, -5.690, 31.125 ], "bp2_params": [ 0.233, -0.180, -0.565, 6.647, -3.088, 0.261 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.650, "simple_Twist": 31.323, "simple_hRise": 3.659, "simple_hTwist": 31.488 }, { "index": 2, "nt1": "///A/2641", "nt2": "///A/2085", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.233, -0.180, -0.565, 6.647, -3.088, 0.261 ], "step_params": [ -7.290, -3.238, 5.389, 21.904, 18.123, 43.799 ], "heli_params": [ -4.931, 9.823, 0.595, 21.791, -26.337, 51.833 ], "bp2_params": [ -0.167, -0.122, 0.759, -1.491, -0.629, -3.044 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 5.389, "simple_Twist": 45.259, "simple_hRise": 0.745, "simple_hTwist": 53.047 }, { "index": 3, "nt1": "///A/2644", "nt2": "///A/2083", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.167, -0.122, 0.759, -1.491, -0.629, -3.044 ], "step_params": [ 0.270, -1.653, 3.753, -0.704, 2.785, 36.499 ], "heli_params": [ -3.063, -0.540, 3.616, 4.437, 1.122, 36.608 ], "bp2_params": [ 0.158, -0.177, -0.315, 0.308, 2.057, -0.883 ], "groove_widths": [ 20.150, null, 15.610, null ], "simple_Rise": 3.753, "simple_Twist": 34.872, "simple_hRise": 3.608, "simple_hTwist": 34.987 }, { "index": 4, "nt1": "///A/2645", "nt2": "///A/2082", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.158, -0.177, -0.315, 0.308, 2.057, -0.883 ], "step_params": [ 0.445, -1.626, 2.966, 1.668, 4.031, 30.008 ], "heli_params": [ -3.822, -0.556, 2.749, 7.733, -3.200, 30.316 ], "bp2_params": [ 0.191, -0.184, -0.643, 9.484, -0.827, 0.912 ], "groove_widths": [ 19.106, 15.539, 12.209, 11.086 ], "simple_Rise": 2.966, "simple_Twist": 29.961, "simple_hRise": 2.749, "simple_hTwist": 30.269 }, { "index": 5, "nt1": "///A/2646", "nt2": "///A/2081", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.191, -0.184, -0.643, 9.484, -0.827, 0.912 ], "step_params": [ 2.900, -1.905, 2.967, -6.810, 10.871, 51.323 ], "heli_params": [ -2.705, -3.614, 2.175, 12.332, 7.726, 52.796 ], "bp2_params": [ -0.177, -0.067, -0.096, 18.692, 0.843, -0.325 ], "groove_widths": [ 17.403, 13.496, 14.473, 11.572 ], "simple_Rise": 2.967, "simple_Twist": 53.336, "simple_hRise": 2.211, "simple_hTwist": 54.747 }, { "index": 6, "nt1": "///A/2647", "nt2": "///A/2079", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.177, -0.067, -0.096, 18.692, 0.843, -0.325 ], "step_params": [ 0.553, -1.367, 3.459, 9.509, 0.683, 34.870 ], "heli_params": [ -2.309, 0.557, 3.460, 1.114, -15.512, 36.111 ], "bp2_params": [ -0.060, -0.086, -0.972, 18.622, -12.110, -2.396 ], "groove_widths": [ 18.391, 14.499, 15.050, 9.842 ], "simple_Rise": 3.459, "simple_Twist": 34.948, "simple_hRise": 3.460, "simple_hTwist": 36.186 }, { "index": 7, "nt1": "///A/2648", "nt2": "///A/2078", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.060, -0.086, -0.972, 18.622, -12.110, -2.396 ], "step_params": [ 0.270, -2.045, 3.751, -2.621, 18.006, 32.900 ], "heli_params": [ -5.535, -0.763, 2.333, 29.180, 4.248, 37.475 ], "bp2_params": [ 0.260, -0.151, 0.171, 5.713, 3.505, 2.763 ], "groove_widths": [ 18.372, 15.347, 15.406, 9.414 ], "simple_Rise": 3.751, "simple_Twist": 30.485, "simple_hRise": 2.209, "simple_hTwist": 35.392 }, { "index": 8, "nt1": "///A/2649", "nt2": "///A/2077", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.260, -0.151, 0.171, 5.713, 3.505, 2.763 ], "step_params": [ 0.428, -1.893, 3.112, 1.355, 16.585, 29.643 ], "heli_params": [ -5.410, -0.557, 1.842, 29.658, -2.423, 33.902 ], "bp2_params": [ -0.165, -0.187, 0.371, -4.777, -1.850, -0.522 ], "groove_widths": [ 17.309, 15.886, 17.150, 13.976 ], "simple_Rise": 3.112, "simple_Twist": 31.881, "simple_hRise": 1.939, "simple_hTwist": 35.862 }, { "index": 9, "nt1": "///A/2650", "nt2": "///A/2076", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.165, -0.187, 0.371, -4.777, -1.850, -0.522 ], "step_params": [ 0.235, -1.981, 3.301, -1.804, 1.983, 37.211 ], "heli_params": [ -3.357, -0.604, 3.180, 3.102, 2.822, 37.304 ], "bp2_params": [ 0.240, -0.291, 0.992, -7.716, 3.330, 0.449 ], "groove_widths": [ 16.816, 15.526, 19.694, 17.690 ], "simple_Rise": 3.301, "simple_Twist": 35.250, "simple_hRise": 3.173, "simple_hTwist": 35.348 }, { "index": 10, "nt1": "///A/2651", "nt2": "///A/2075", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.240, -0.291, 0.992, -7.716, 3.330, 0.449 ], "step_params": [ -0.389, -2.799, 3.262, 4.909, -4.621, 19.074 ], "heli_params": [ -5.691, 3.534, 3.619, -13.413, -14.250, 20.220 ], "bp2_params": [ -0.200, -0.154, 0.003, -3.393, 3.571, -1.427 ], "groove_widths": [ 16.474, 15.139, 19.850, 18.429 ], "simple_Rise": 3.262, "simple_Twist": 21.050, "simple_hRise": 3.603, "simple_hTwist": 22.092 }, { "index": 11, "nt1": "///A/2652", "nt2": "///A/2074", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.200, -0.154, 0.003, -3.393, 3.571, -1.427 ], "step_params": [ -0.214, -1.947, 3.281, -3.528, 2.105, 34.583 ], "heli_params": [ -3.571, -0.173, 3.167, 3.525, 5.909, 34.819 ], "bp2_params": [ -0.167, -0.191, 0.061, -2.621, 2.218, -0.396 ], "groove_widths": [ 16.618, 15.184, 18.443, 17.702 ], "simple_Rise": 3.281, "simple_Twist": 34.668, "simple_hRise": 3.167, "simple_hTwist": 34.903 }, { "index": 12, "nt1": "///A/2653", "nt2": "///A/2073", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.167, -0.191, 0.061, -2.621, 2.218, -0.396 ], "step_params": [ 0.711, -2.147, 3.255, 7.511, 6.190, 38.051 ], "heli_params": [ -3.912, -0.193, 2.966, 9.310, -11.296, 39.231 ], "bp2_params": [ -0.156, -0.119, -0.434, -7.230, 0.057, -1.325 ], "groove_widths": [ 16.989, null, 16.654, null ], "simple_Rise": 3.255, "simple_Twist": 37.831, "simple_hRise": 2.963, "simple_hTwist": 39.019 }, { "index": 13, "nt1": "///A/2654", "nt2": "///A/2072", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.156, -0.119, -0.434, -7.230, 0.057, -1.325 ], "step_params": [ 1.100, -0.060, 2.914, 4.475, 4.205, 38.289 ], "heli_params": [ -0.558, -1.160, 2.996, 6.361, -6.769, 38.760 ], "bp2_params": [ 0.179, -0.180, -0.568, 6.114, 0.968, 0.594 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.914, "simple_Twist": 36.312, "simple_hRise": 2.999, "simple_hTwist": 36.810 }, { "index": 14, "nt1": "///A/2655", "nt2": "///A/2806", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.179, -0.180, -0.568, 6.114, 0.968, 0.594 ], "step_params": [ -4.074, 1.522, 3.452, 0.601, 38.350, 105.640 ], "heli_params": [ 0.392, 2.489, 3.702, 23.579, -0.370, 110.390 ], "bp2_params": [ -2.336, -7.383, 2.017, -36.686, -16.048, -145.806 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.452, "simple_Twist": -1.471, "simple_hRise": -1.322, "simple_hTwist": -38.382 }, { "index": 15, "nt1": "///A/2656", "nt2": "///A/2810", "bp": "G+A", "name": "Linker", "Saenger": "--", "LW": "tS.", "DSSR": "tm+." } ] }, { "index": 82, "num_stems": 5, "strand1": "GGGCGGGAUGGACGCACUGGUGAGCCAGUUGUUCUUGG", "strand2": "CAUAUCCUGUCGGCGUGAUCGAUGGGUCGACGGGACCG", "bp_type": "|....||||||.|||||||||...|||||||||||.|.", "helix_form": ".xxxA.AA..x.AAAAx....x.xAAA.xA....x..", "helical_rise": 2.885, "helical_rise_std": 1.368, "helical_radius": 10.493, "helical_radius_std": 4.364, "helical_axis": [ -0.241, 0.617, 0.749 ], "point1": [ 213.942, 99.558, 187.320 ], "point2": [ 188.184, 165.343, 267.239 ], "num_pairs": 38, "pairs": [ { "index": 1, "nt1": "///A/2692", "nt2": "///A/2687", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.224, -0.168, 0.290, -2.378, 13.688, 6.797 ], "step_params": [ -0.918, -0.580, 2.744, 2.419, 1.187, 61.433 ], "heli_params": [ -0.613, 0.993, 2.699, 1.161, -2.367, 61.486 ], "bp2_params": [ 6.329, -4.276, 0.051, 11.283, 8.895, 0.280 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.744, "simple_Twist": 15.015, "simple_hRise": 2.512, "simple_hTwist": 15.254 }, { "index": 2, "nt1": "///A/2693", "nt2": "///A/2686", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.329, -4.276, 0.051, 11.283, 8.895, 0.280 ], "step_params": [ -1.430, -0.239, 3.300, -2.965, 0.520, -142.704 ], "heli_params": [ 0.123, -0.770, 3.287, -0.274, -1.565, -142.718 ], "bp2_params": [ 6.998, 1.504, -1.463, 24.826, -9.262, 3.165 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.300, "simple_Twist": -19.845, "simple_hRise": 3.060, "simple_hTwist": -20.070 }, { "index": 3, "nt1": "///A/2684", "nt2": "///A/2685", "bp": "G+U", "name": "Platform", "Saenger": "--", "LW": "cSH", "DSSR": "cm+M", "bp1_params": [ 6.998, 1.504, -1.463, 24.826, -9.262, 3.165 ], "step_params": [ 3.425, 2.367, 4.857, 2.785, -18.467, -110.476 ], "heli_params": [ -1.100, 2.122, 5.031, 11.192, 1.688, -111.527 ], "bp2_params": [ -0.123, 3.563, 0.915, -31.959, -11.834, -140.632 ], "groove_widths": [ 23.065, null, 14.232, null ], "simple_Rise": 4.857, "simple_Twist": 120.673, "simple_hRise": 4.668, "simple_hTwist": 121.536 }, { "index": 4, "nt1": "///A/2696", "nt2": "///A/2683", "bp": "C+A", "name": "--", "Saenger": "--", "LW": "cWH", "DSSR": "cW+M", "bp1_params": [ -0.123, 3.563, 0.915, -31.959, -11.834, -140.632 ], "step_params": [ -1.919, 1.191, 6.733, -5.715, 19.718, -36.600 ], "heli_params": [ -5.699, -3.858, 5.131, -28.789, -8.344, -41.791 ], "bp2_params": [ -0.407, -0.818, -0.887, -13.336, -2.995, -14.244 ], "groove_widths": [ 24.110, 20.376, 12.099, 10.002 ], "simple_Rise": 6.733, "simple_Twist": 16.362, "simple_hRise": 5.533, "simple_hTwist": 26.197 }, { "index": 5, "nt1": "///A/2697", "nt2": "///A/2681", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.407, -0.818, -0.887, -13.336, -2.995, -14.244 ], "step_params": [ 0.599, -1.319, 2.866, -4.268, 2.520, 28.568 ], "heli_params": [ -3.107, -1.994, 2.627, 5.059, 8.567, 28.986 ], "bp2_params": [ -0.184, -0.182, -0.228, -5.613, -0.143, -1.684 ], "groove_widths": [ 21.972, 13.781, 15.742, 13.505 ], "simple_Rise": 2.866, "simple_Twist": 27.290, "simple_hRise": 2.613, "simple_hTwist": 27.728 }, { "index": 6, "nt1": "///A/2698", "nt2": "///A/2680", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.184, -0.182, -0.228, -5.613, -0.143, -1.684 ], "step_params": [ 1.069, -2.077, 2.920, 4.346, 17.798, 36.067 ], "heli_params": [ -4.569, -1.171, 1.848, 26.730, -6.528, 40.315 ], "bp2_params": [ -0.165, -0.190, -0.292, -3.838, -1.390, 3.633 ], "groove_widths": [ 18.284, 12.628, 15.130, 13.044 ], "simple_Rise": 2.920, "simple_Twist": 36.515, "simple_hRise": 1.863, "simple_hTwist": 40.713 }, { "index": 7, "nt1": "///A/2699", "nt2": "///A/2679", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.165, -0.190, -0.292, -3.838, -1.390, 3.633 ], "step_params": [ -0.434, -1.364, 3.011, 0.652, 3.346, 31.909 ], "heli_params": [ -3.007, 0.890, 2.848, 6.065, -1.182, 32.086 ], "bp2_params": [ 0.116, -0.097, -0.508, -0.243, 0.432, -5.559 ], "groove_widths": [ 16.886, 15.519, 16.137, 14.251 ], "simple_Rise": 3.011, "simple_Twist": 30.089, "simple_hRise": 2.836, "simple_hTwist": 30.277 }, { "index": 8, "nt1": "///A/2700", "nt2": "///A/2678", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.116, -0.097, -0.508, -0.243, 0.432, -5.559 ], "step_params": [ 0.132, -1.208, 3.294, 2.541, 0.464, 37.356 ], "heli_params": [ -1.944, 0.130, 3.281, 0.724, -3.961, 37.442 ], "bp2_params": [ 1.422, -0.404, -0.199, 7.802, -2.792, -7.324 ], "groove_widths": [ 16.668, 15.365, 20.261, 19.628 ], "simple_Rise": 3.294, "simple_Twist": 30.110, "simple_hRise": 3.275, "simple_hTwist": 30.218 }, { "index": 9, "nt1": "///A/2701", "nt2": "///A/2677", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.422, -0.404, -0.199, 7.802, -2.792, -7.324 ], "step_params": [ -0.154, -2.773, 3.563, -0.245, 5.854, 24.574 ], "heli_params": [ -8.037, 0.282, 2.838, 13.509, 0.565, 25.252 ], "bp2_params": [ -0.768, -0.889, -0.575, -1.170, -0.782, -14.575 ], "groove_widths": [ 16.315, 14.969, 19.496, 17.680 ], "simple_Rise": 3.563, "simple_Twist": 36.310, "simple_hRise": 3.095, "simple_hTwist": 36.764 }, { "index": 10, "nt1": "///A/2702", "nt2": "///A/2676", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.768, -0.889, -0.575, -1.170, -0.782, -14.575 ], "step_params": [ -0.436, -2.546, 3.232, -8.864, 5.891, 25.831 ], "heli_params": [ -6.584, -1.056, 2.604, 12.523, 18.841, 27.903 ], "bp2_params": [ -0.151, -0.145, 0.169, -7.632, 5.972, 1.698 ], "groove_widths": [ 16.574, 15.215, 14.798, 13.390 ], "simple_Rise": 3.232, "simple_Twist": 22.875, "simple_hRise": 2.502, "simple_hTwist": 25.200 }, { "index": 11, "nt1": "///A/2703", "nt2": "///A/2675", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.151, -0.145, 0.169, -7.632, 5.972, 1.698 ], "step_params": [ 0.363, -2.067, 3.177, -2.198, 20.095, 49.487 ], "heli_params": [ -3.410, -0.526, 2.224, 22.932, 2.508, 53.215 ], "bp2_params": [ -0.126, 1.601, -0.274, -9.197, -12.781, -22.282 ], "groove_widths": [ 17.459, 16.122, 13.694, 11.555 ], "simple_Rise": 3.177, "simple_Twist": 48.782, "simple_hRise": 2.207, "simple_hTwist": 52.567 }, { "index": 12, "nt1": "///A/2704", "nt2": "///A/2761", "bp": "A-G", "name": "Imino", "Saenger": "08-VIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.126, 1.601, -0.274, -9.197, -12.781, -22.282 ], "step_params": [ 0.589, -0.468, 3.589, -5.705, 0.974, 31.480 ], "heli_params": [ -1.040, -2.181, 3.417, 1.776, 10.404, 31.994 ], "bp2_params": [ 0.247, -0.186, -0.462, -6.606, -9.601, 2.423 ], "groove_widths": [ 17.880, 15.975, 13.894, 11.509 ], "simple_Rise": 3.589, "simple_Twist": 29.690, "simple_hRise": 3.402, "simple_hTwist": 30.236 }, { "index": 13, "nt1": "///A/2705", "nt2": "///A/2760", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.247, -0.186, -0.462, -6.606, -9.601, 2.423 ], "step_params": [ -0.326, -1.382, 4.118, -1.307, 1.690, 30.360 ], "heli_params": [ -3.055, 0.294, 4.047, 3.222, 2.491, 30.434 ], "bp2_params": [ -0.155, -0.292, -1.111, -11.436, 0.948, -0.548 ], "groove_widths": [ 17.770, 16.179, 15.679, 13.056 ], "simple_Rise": 4.118, "simple_Twist": 32.656, "simple_hRise": 4.053, "simple_hTwist": 32.724 }, { "index": 14, "nt1": "///A/2706", "nt2": "///A/2759", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.155, -0.292, -1.111, -11.436, 0.948, -0.548 ], "step_params": [ -0.264, -1.216, 3.083, -2.314, 5.893, 31.406 ], "heli_params": [ -3.175, 0.097, 2.826, 10.750, 4.221, 32.022 ], "bp2_params": [ 0.116, -0.194, -0.680, -0.999, 4.167, -1.987 ], "groove_widths": [ 17.563, 17.031, 16.074, 12.839 ], "simple_Rise": 3.083, "simple_Twist": 29.922, "simple_hRise": 2.810, "simple_hTwist": 30.570 }, { "index": 15, "nt1": "///A/2707", "nt2": "///A/2758", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.116, -0.194, -0.680, -0.999, 4.167, -1.987 ], "step_params": [ 0.459, -1.545, 3.042, -4.921, 7.292, 31.013 ], "heli_params": [ -3.914, -1.589, 2.523, 13.306, 8.979, 32.207 ], "bp2_params": [ 0.022, -0.089, 0.324, 0.353, 6.757, -2.663 ], "groove_widths": [ 18.791, 13.394, 15.234, 12.340 ], "simple_Rise": 3.042, "simple_Twist": 31.227, "simple_hRise": 2.527, "simple_hTwist": 32.413 }, { "index": 16, "nt1": "///A/2708", "nt2": "///A/2757", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.022, -0.089, 0.324, 0.353, 6.757, -2.663 ], "step_params": [ 0.552, -1.886, 3.287, 2.329, 4.219, 36.064 ], "heli_params": [ -3.596, -0.568, 3.083, 6.777, -3.741, 36.374 ], "bp2_params": [ 0.222, -0.141, 0.515, 5.143, 7.041, 1.262 ], "groove_widths": [ 18.619, 9.611, 11.335, 11.335 ], "simple_Rise": 3.287, "simple_Twist": 35.346, "simple_hRise": 3.078, "simple_hTwist": 35.663 }, { "index": 17, "nt1": "///A/2709", "nt2": "///A/2756", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.222, -0.141, 0.515, 5.143, 7.041, 1.262 ], "step_params": [ -5.456, -0.236, 3.945, 17.957, -8.478, 113.568 ], "heli_params": [ -0.036, 3.462, 3.378, -5.046, -10.687, 114.688 ], "bp2_params": [ -0.020, -0.067, -0.418, -8.668, -7.648, 0.286 ], "groove_widths": [ 16.736, 10.428, 10.680, 9.972 ], "simple_Rise": 3.945, "simple_Twist": 114.794, "simple_hRise": 3.392, "simple_hTwist": 115.888 }, { "index": 18, "nt1": "///A/2713", "nt2": "///A/2754", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.020, -0.067, -0.418, -8.668, -7.648, 0.286 ], "step_params": [ 1.036, -1.629, 3.557, -4.547, 31.628, 16.365 ], "heli_params": [ -6.205, -2.196, 0.087, 62.920, 9.046, 35.803 ], "bp2_params": [ -2.347, -0.634, -1.022, -12.956, -11.850, -9.623 ], "groove_widths": [ 16.827, 12.481, 9.464, 8.103 ], "simple_Rise": 3.557, "simple_Twist": 28.496, "simple_hRise": 1.118, "simple_hTwist": 42.565 }, { "index": 19, "nt1": "///A/2714", "nt2": "///A/2753", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.347, -0.634, -1.022, -12.956, -11.850, -9.623 ], "step_params": [ -1.015, -1.575, 3.700, -4.558, 0.517, 39.398 ], "heli_params": [ -2.391, 0.886, 3.769, 0.764, 6.733, 39.654 ], "bp2_params": [ -0.134, -0.247, -1.314, -16.584, 0.333, -1.565 ], "groove_widths": [ 17.046, 15.039, 16.305, 11.718 ], "simple_Rise": 3.700, "simple_Twist": 27.781, "simple_hRise": 3.785, "simple_hTwist": 28.150 }, { "index": 20, "nt1": "///A/2715", "nt2": "///A/2752", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.134, -0.247, -1.314, -16.584, 0.333, -1.565 ], "step_params": [ -0.234, -0.846, 3.069, -6.895, 4.454, 38.964 ], "heli_params": [ -1.724, -0.401, 2.956, 6.588, 10.199, 39.786 ], "bp2_params": [ 2.062, -0.419, -0.161, -0.277, 5.182, -10.080 ], "groove_widths": [ 19.510, 13.878, 14.984, 13.505 ], "simple_Rise": 3.069, "simple_Twist": 27.735, "simple_hRise": 2.875, "simple_hTwist": 28.901 }, { "index": 21, "nt1": "///A/2716", "nt2": "///A/2751", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.062, -0.419, -0.161, -0.277, 5.182, -10.080 ], "step_params": [ 0.847, -0.934, 3.123, 0.351, 1.813, 53.382 ], "heli_params": [ -1.148, -0.921, 3.097, 2.018, -0.391, 53.412 ], "bp2_params": [ 6.800, -4.208, 0.134, 9.921, 3.795, -3.002 ], "groove_widths": [ 21.675, 10.189, 10.019, 8.775 ], "simple_Rise": 3.123, "simple_Twist": 18.182, "simple_hRise": 3.032, "simple_hTwist": 18.275 }, { "index": 22, "nt1": "///A/2717", "nt2": "///A/2750", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.800, -4.208, 0.134, 9.921, 3.795, -3.002 ], "step_params": [ -2.202, -5.096, 3.001, -16.143, 13.048, -162.771 ], "heli_params": [ 2.550, -1.146, 3.040, -6.597, -8.162, -163.055 ], "bp2_params": [ 0.475, -2.953, 0.893, 15.819, -12.295, 77.484 ], "groove_widths": [ 20.189, 12.043, 8.323, 7.345 ], "simple_Rise": 3.001, "simple_Twist": 108.495, "simple_hRise": 2.784, "simple_hTwist": 109.839 }, { "index": 23, "nt1": "///A/2898", "nt2": "///A/2749", "bp": "A+U", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ 0.475, -2.953, 0.893, 15.819, -12.295, 77.484 ], "step_params": [ -5.105, -0.312, 4.033, 2.070, -9.452, -26.017 ], "heli_params": [ 3.567, -10.014, 4.058, 20.129, 4.409, -27.729 ], "bp2_params": [ -4.829, 2.421, 0.218, 11.324, 5.007, 93.557 ], "groove_widths": [ 18.190, 15.204, 13.609, 13.296 ], "simple_Rise": 4.033, "simple_Twist": 13.074, "simple_hRise": 2.781, "simple_hTwist": 16.252 }, { "index": 24, "nt1": "///A/2897", "nt2": "///A/2748", "bp": "G+G", "name": "--", "Saenger": "--", "LW": "tW.", "DSSR": "tW+.", "bp1_params": [ -4.829, 2.421, 0.218, 11.324, 5.007, 93.557 ], "step_params": [ -3.043, -1.551, 3.755, 5.510, 9.010, -88.907 ], "heli_params": [ 0.882, -2.029, 4.011, -6.414, 3.922, -89.402 ], "bp2_params": [ 0.191, -0.205, -0.528, -6.303, 5.203, -1.983 ], "groove_widths": [ 17.028, 15.178, 27.261, 24.343 ], "simple_Rise": 3.755, "simple_Twist": 5.799, "simple_hRise": -0.740, "simple_hTwist": 12.044 }, { "index": 25, "nt1": "///A/2720", "nt2": "///A/2747", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.191, -0.205, -0.528, -6.303, 5.203, -1.983 ], "step_params": [ -0.757, -2.078, 3.335, -2.257, 6.821, 26.879 ], "heli_params": [ -5.883, 1.060, 2.786, 14.350, 4.748, 27.805 ], "bp2_params": [ 0.181, -0.195, -0.486, -1.091, 8.922, -2.801 ], "groove_widths": [ 17.540, 15.876, 25.950, 22.717 ], "simple_Rise": 3.335, "simple_Twist": 26.835, "simple_hRise": 2.784, "simple_hTwist": 27.763 }, { "index": 26, "nt1": "///A/2721", "nt2": "///A/2746", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.181, -0.195, -0.486, -1.091, 8.922, -2.801 ], "step_params": [ 0.756, -1.890, 3.307, -1.669, 11.508, 32.099 ], "heli_params": [ -4.889, -1.531, 2.462, 20.009, 2.902, 34.089 ], "bp2_params": [ 0.022, -0.089, 0.004, -2.103, -1.571, 2.181 ], "groove_widths": [ 17.750, 16.226, 16.390, 15.487 ], "simple_Rise": 3.307, "simple_Twist": 32.791, "simple_hRise": 2.482, "simple_hTwist": 34.738 }, { "index": 27, "nt1": "///A/2722", "nt2": "///A/2745", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.022, -0.089, 0.004, -2.103, -1.571, 2.181 ], "step_params": [ -0.423, -1.759, 3.314, -1.670, 2.217, 31.835 ], "heli_params": [ -3.596, 0.467, 3.204, 4.032, 3.037, 31.952 ], "bp2_params": [ -0.214, -0.208, 0.536, -1.335, -1.842, -0.523 ], "groove_widths": [ 17.206, 15.498, 15.274, 15.186 ], "simple_Rise": 3.314, "simple_Twist": 33.145, "simple_hRise": 3.209, "simple_hTwist": 33.258 }, { "index": 28, "nt1": "///A/2723", "nt2": "///A/2744", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.214, -0.208, 0.536, -1.335, -1.842, -0.523 ], "step_params": [ 0.309, -1.615, 3.199, 1.957, 0.213, 41.016 ], "heli_params": [ -2.325, -0.233, 3.202, 0.304, -2.791, 41.062 ], "bp2_params": [ 1.875, -0.479, 0.563, 0.784, -0.124, -4.238 ], "groove_widths": [ 17.427, 15.653, 20.924, 20.923 ], "simple_Rise": 3.199, "simple_Twist": 29.792, "simple_hRise": 3.201, "simple_hTwist": 29.856 }, { "index": 29, "nt1": "///A/2724", "nt2": "///A/2743", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.875, -0.479, 0.563, 0.784, -0.124, -4.238 ], "step_params": [ -3.076, -2.337, 3.366, 11.041, 22.860, 5.709 ], "heli_params": [ -6.396, 7.416, -2.612, 69.815, -33.720, 26.011 ], "bp2_params": [ -0.126, -0.127, -0.786, -7.939, -9.996, -1.080 ], "groove_widths": [ 18.540, 17.153, 19.309, 15.062 ], "simple_Rise": 3.366, "simple_Twist": 16.148, "simple_hRise": -1.066, "simple_hTwist": 30.016 }, { "index": 30, "nt1": "///A/2725", "nt2": "///A/2740", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.126, -0.127, -0.786, -7.939, -9.996, -1.080 ], "step_params": [ -0.006, -1.230, 3.121, -13.668, 5.746, 27.694 ], "heli_params": [ -3.277, -2.367, 2.547, 11.057, 26.301, 31.344 ], "bp2_params": [ -0.152, -0.171, 0.779, 1.154, 5.380, 3.014 ], "groove_widths": [ 19.247, 18.177, 17.691, 12.352 ], "simple_Rise": 3.121, "simple_Twist": 28.340, "simple_hRise": 2.565, "simple_hTwist": 31.914 }, { "index": 31, "nt1": "///A/2726", "nt2": "///A/2739", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.152, -0.171, 0.779, 1.154, 5.380, 3.014 ], "step_params": [ 0.419, -1.386, 3.249, 2.791, 4.390, 38.372 ], "heli_params": [ -2.616, -0.298, 3.099, 6.642, -4.222, 38.710 ], "bp2_params": [ 1.806, -0.404, 0.563, 5.814, 6.850, 2.272 ], "groove_widths": [ 18.533, 16.594, 14.940, 11.604 ], "simple_Rise": 3.249, "simple_Twist": 27.290, "simple_hRise": 3.020, "simple_hTwist": 27.772 }, { "index": 32, "nt1": "///A/2727", "nt2": "///A/2738", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.806, -0.404, 0.563, 5.814, 6.850, 2.272 ], "step_params": [ -0.003, -1.881, 3.067, 8.076, 10.724, 34.910 ], "heli_params": [ -4.155, 0.921, 2.350, 17.114, -12.888, 37.327 ], "bp2_params": [ 1.827, -0.467, 0.271, -0.141, -5.890, -1.284 ], "groove_widths": [ 17.143, 15.127, 17.754, 16.033 ], "simple_Rise": 3.067, "simple_Twist": 34.967, "simple_hRise": 2.352, "simple_hTwist": 37.381 }, { "index": 33, "nt1": "///A/2728", "nt2": "///A/2737", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.827, -0.467, 0.271, -0.141, -5.890, -1.284 ], "step_params": [ -0.149, -1.894, 3.143, -0.507, 3.104, 28.115 ], "heli_params": [ -4.545, 0.195, 2.924, 6.365, 1.040, 28.287 ], "bp2_params": [ 0.187, -0.201, 0.457, -4.072, 1.406, -0.466 ], "groove_widths": [ 20.462, 14.102, 18.088, 16.408 ], "simple_Rise": 3.143, "simple_Twist": 37.001, "simple_hRise": 2.982, "simple_hTwist": 37.129 }, { "index": 34, "nt1": "///A/2729", "nt2": "///A/2736", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.187, -0.201, 0.457, -4.072, 1.406, -0.466 ], "step_params": [ -1.147, -2.668, 2.803, -7.284, 4.750, 25.545 ], "heli_params": [ -6.734, 0.909, 2.501, 10.367, 15.898, 26.961 ], "bp2_params": [ -0.109, -0.260, 0.999, 6.756, 1.628, -7.047 ], "groove_widths": [ 23.460, 13.888, 13.472, 13.449 ], "simple_Rise": 2.803, "simple_Twist": 27.019, "simple_hRise": 2.524, "simple_hTwist": 28.360 }, { "index": 35, "nt1": "///A/2730", "nt2": "///A/2735", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.109, -0.260, 0.999, 6.756, 1.628, -7.047 ], "step_params": [ -5.312, -2.903, 7.231, -11.743, 1.657, 104.871 ], "heli_params": [ -1.877, 2.974, 7.593, 1.043, 7.392, 105.342 ], "bp2_params": [ -1.503, -1.594, 0.742, -8.837, 8.271, -14.756 ], "groove_widths": [ 21.949, null, 9.234, null ], "simple_Rise": 7.231, "simple_Twist": 113.585, "simple_hRise": 7.542, "simple_hTwist": 113.986 }, { "index": 36, "nt1": "///A/1501", "nt2": "///A/2733", "bp": "U-C", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.503, -1.594, 0.742, -8.837, 8.271, -14.756 ], "step_params": [ 1.487, -1.526, 3.072, 12.552, 8.334, 41.659 ], "heli_params": [ -2.780, -0.844, 3.033, 11.285, -16.995, 44.185 ], "bp2_params": [ -0.272, -0.184, -0.385, -2.498, -16.269, 1.099 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.072, "simple_Twist": 33.802, "simple_hRise": 2.977, "simple_hTwist": 36.918 }, { "index": 37, "nt1": "///A/1502", "nt2": "///A/2732", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.272, -0.184, -0.385, -2.498, -16.269, 1.099 ], "step_params": [ -0.655, -0.696, 3.974, -1.515, -3.033, 163.375 ], "heli_params": [ -0.344, 0.327, 3.978, -1.532, 0.765, 163.383 ], "bp2_params": [ -0.718, -2.628, -0.967, 8.632, 28.246, 134.944 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.974, "simple_Twist": 37.919, "simple_hRise": 4.038, "simple_hTwist": 38.065 }, { "index": 38, "nt1": "///A/1503", "nt2": "///A/2731", "bp": "G+G", "name": "--", "Saenger": "06-VI", "LW": ".HW", "DSSR": ".M+W" } ] }, { "index": 83, "num_stems": 4, "strand1": "CAUAAGCAUGAGCCCCCCUCAAAGAUUUCCC", "strand2": "AAAGUCGUGAUAGGGCGGAGAGUUUAAAGGG", "bp_type": ".....||||...|||.||||...||||||||", "helix_form": "..xxxA...xx..A.xAAA.xxx.AAA.Ax", "helical_rise": 2.793, "helical_rise_std": 1.850, "helical_radius": 12.106, "helical_radius_std": 5.145, "helical_axis": [ -0.583, 0.059, 0.810 ], "point1": [ 201.988, 104.099, 157.372 ], "point2": [ 152.718, 109.080, 225.847 ], "num_pairs": 31, "pairs": [ { "index": 1, "nt1": "///A/2781", "nt2": "///A/2779", "bp": "C+A", "name": "--", "Saenger": "--", "LW": "tWS", "DSSR": "tW+m", "bp1_params": [ -3.253, 1.926, 0.396, 24.207, 17.522, 50.782 ], "step_params": [ 1.256, -1.647, 3.025, 10.136, -4.701, 127.365 ], "heli_params": [ -0.883, -0.625, 3.109, -2.620, -5.650, 127.634 ], "bp2_params": [ 4.116, 0.477, -1.468, -4.404, -42.977, -102.978 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.025, "simple_Twist": 15.828, "simple_hRise": 3.528, "simple_hTwist": 19.353 }, { "index": 2, "nt1": "///A/2782", "nt2": "///A/2778", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 4.116, 0.477, -1.468, -4.404, -42.977, -102.978 ], "step_params": [ 0.416, 0.013, 3.204, -0.405, -10.349, 25.429 ], "heli_params": [ 2.531, -0.976, 2.964, -22.364, 0.875, 27.425 ], "bp2_params": [ 2.381, -0.573, -0.609, -5.508, -26.983, -101.508 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.204, "simple_Twist": 32.406, "simple_hRise": 3.051, "simple_hTwist": 33.979 }, { "index": 3, "nt1": "///A/2783", "nt2": "///A/2777", "bp": "U-A", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 2.381, -0.573, -0.609, -5.508, -26.983, -101.508 ], "step_params": [ 1.520, -1.616, 3.386, -3.774, -15.996, 43.796 ], "heli_params": [ -0.560, -2.270, 3.600, -20.601, 4.861, 46.636 ], "bp2_params": [ -6.315, -3.916, 1.673, -1.434, -1.997, -19.847 ], "groove_widths": [ 16.677, null, 12.397, null ], "simple_Rise": 3.386, "simple_Twist": 96.657, "simple_hRise": 3.513, "simple_hTwist": 97.700 }, { "index": 4, "nt1": "///A/2786", "nt2": "///A/2776", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.315, -3.916, 1.673, -1.434, -1.997, -19.847 ], "step_params": [ -1.245, -2.649, 3.717, -15.169, 26.982, 1.434 ], "heli_params": [ -8.375, 0.410, -1.523, 76.196, 42.836, 30.986 ], "bp2_params": [ 0.265, -3.239, -0.511, -5.975, -4.796, 62.275 ], "groove_widths": [ 18.400, 16.830, 7.822, 2.847 ], "simple_Rise": 3.717, "simple_Twist": 99.868, "simple_hRise": 3.255, "simple_hTwist": 103.320 }, { "index": 5, "nt1": "///A/2787", "nt2": "///A/2785", "bp": "A+U", "name": "Hoogsteen", "Saenger": "23-XXIII", "LW": "cHW", "DSSR": "cM+W", "bp1_params": [ 0.265, -3.239, -0.511, -5.975, -4.796, 62.275 ], "step_params": [ 3.721, -0.939, 3.171, -5.894, -4.974, 89.838 ], "heli_params": [ -0.568, -2.741, 3.013, -3.517, 4.167, 90.098 ], "bp2_params": [ -0.131, -0.196, -0.395, 10.944, 5.256, -1.015 ], "groove_widths": [ 17.611, 15.275, 16.462, 13.795 ], "simple_Rise": 3.171, "simple_Twist": -46.698, "simple_hRise": 3.478, "simple_hTwist": -47.295 }, { "index": 6, "nt1": "///A/2788", "nt2": "///A/2774", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.131, -0.196, -0.395, 10.944, 5.256, -1.015 ], "step_params": [ 0.504, -1.785, 3.208, 7.541, 3.156, 38.173 ], "heli_params": [ -3.044, 0.133, 3.097, 4.758, -11.371, 39.006 ], "bp2_params": [ 0.211, -0.351, -1.197, 10.393, -4.825, 1.588 ], "groove_widths": [ 18.169, 15.940, 21.293, 16.369 ], "simple_Rise": 3.208, "simple_Twist": 36.109, "simple_hRise": 3.086, "simple_hTwist": 36.993 }, { "index": 7, "nt1": "///A/2789", "nt2": "///A/2773", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.211, -0.351, -1.197, 10.393, -4.825, 1.588 ], "step_params": [ -0.679, -3.032, 3.845, -1.915, 13.890, 19.415 ], "heli_params": [ -11.364, 1.081, 1.439, 35.765, 4.931, 23.909 ], "bp2_params": [ -0.110, -0.166, -0.113, -3.402, -4.134, 9.344 ], "groove_widths": [ 17.829, 16.014, 19.950, 18.861 ], "simple_Rise": 3.845, "simple_Twist": 20.996, "simple_hRise": 1.610, "simple_hTwist": 25.204 }, { "index": 8, "nt1": "///A/2790", "nt2": "///A/2772", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.110, -0.166, -0.113, -3.402, -4.134, 9.344 ], "step_params": [ 0.471, -1.821, 3.077, 0.902, 0.444, 37.145 ], "heli_params": [ -2.913, -0.626, 3.066, 0.697, -1.415, 37.158 ], "bp2_params": [ 0.994, -0.441, 0.035, -2.618, -2.584, 8.156 ], "groove_widths": [ 16.164, 13.623, 17.436, 14.787 ], "simple_Rise": 3.077, "simple_Twist": 30.941, "simple_hRise": 3.064, "simple_hTwist": 30.957 }, { "index": 9, "nt1": "///A/2791", "nt2": "///A/2771", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.994, -0.441, 0.035, -2.618, -2.584, 8.156 ], "step_params": [ -1.265, -0.883, 3.009, -0.213, 3.089, 54.012 ], "heli_params": [ -1.144, 1.379, 2.963, 3.398, 0.234, 54.094 ], "bp2_params": [ 6.574, -4.245, 0.191, 0.309, 0.554, -1.267 ], "groove_widths": [ 19.725, 15.723, 9.311, 9.187 ], "simple_Rise": 3.009, "simple_Twist": 14.677, "simple_hRise": 2.782, "simple_hTwist": 14.998 }, { "index": 10, "nt1": "///A/2792", "nt2": "///A/2770", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.574, -4.245, 0.191, 0.309, 0.554, -1.267 ], "step_params": [ -2.961, -1.020, 6.014, -0.698, 31.367, 28.750 ], "heli_params": [ -7.047, 3.977, 3.445, 48.511, 1.079, 42.310 ], "bp2_params": [ -3.647, -1.497, -0.556, 0.134, -2.141, -96.059 ], "groove_widths": [ 22.232, 18.221, 7.191, 7.191 ], "simple_Rise": 6.014, "simple_Twist": 95.151, "simple_hRise": 5.610, "simple_hTwist": 98.994 }, { "index": 11, "nt1": "///A/2793", "nt2": "///A/2768", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -3.647, -1.497, -0.556, 0.134, -2.141, -96.059 ], "step_params": [ 0.974, 2.725, 3.662, -0.053, -2.964, -175.208 ], "heli_params": [ -1.362, 0.487, 3.665, 1.483, -0.027, -175.210 ], "bp2_params": [ -1.637, -2.042, 1.408, -3.176, 3.413, 123.817 ], "groove_widths": [ 20.083, 16.578, 9.707, 9.572 ], "simple_Rise": 3.662, "simple_Twist": 43.750, "simple_hRise": 3.478, "simple_hTwist": 43.845 }, { "index": 12, "nt1": "///A/2795", "nt2": "///A/2767", "bp": "G+A", "name": "--", "Saenger": "--", "LW": "..W", "DSSR": "..+W", "bp1_params": [ -1.637, -2.042, 1.408, -3.176, 3.413, 123.817 ], "step_params": [ -1.774, -0.047, 3.308, 0.814, 11.266, -90.556 ], "heli_params": [ -0.192, -1.226, 3.309, -7.903, 0.571, -91.105 ], "bp2_params": [ 0.164, -0.203, -0.694, -1.947, 7.558, -0.484 ], "groove_widths": [ 18.437, 15.612, 11.833, 11.830 ], "simple_Rise": 3.308, "simple_Twist": 28.112, "simple_hRise": 3.014, "simple_hTwist": 30.254 }, { "index": 13, "nt1": "///A/2796", "nt2": "///A/2766", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.164, -0.203, -0.694, -1.947, 7.558, -0.484 ], "step_params": [ -0.041, -1.898, 2.969, -5.495, 10.445, 37.861 ], "heli_params": [ -3.825, -0.477, 2.367, 15.640, 8.228, 39.594 ], "bp2_params": [ 0.211, -0.209, -0.411, 4.992, 2.844, 1.075 ], "groove_widths": [ 17.523, 15.914, 16.402, 13.762 ], "simple_Rise": 2.969, "simple_Twist": 37.759, "simple_hRise": 2.366, "simple_hTwist": 39.496 }, { "index": 14, "nt1": "///A/2797", "nt2": "///A/2765", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.211, -0.209, -0.411, 4.992, 2.844, 1.075 ], "step_params": [ -0.336, -1.643, 2.932, 2.814, 7.631, 29.811 ], "heli_params": [ -4.318, 1.086, 2.406, 14.497, -5.347, 30.876 ], "bp2_params": [ 0.141, -0.273, -1.013, 12.685, 1.533, -1.728 ], "groove_widths": [ 17.310, 14.250, 16.958, 11.037 ], "simple_Rise": 2.932, "simple_Twist": 30.262, "simple_hRise": 2.415, "simple_hTwist": 31.312 }, { "index": 15, "nt1": "///A/2798", "nt2": "///A/2764", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.141, -0.273, -1.013, 12.685, 1.533, -1.728 ], "step_params": [ -0.746, -1.498, 3.535, -3.111, -1.613, 37.572 ], "heli_params": [ -2.087, 0.712, 3.642, -2.498, 4.817, 37.729 ], "bp2_params": [ 4.335, -1.168, -0.521, 26.261, -2.836, 4.824 ], "groove_widths": [ 18.468, 13.323, 12.584, 12.399 ], "simple_Rise": 3.535, "simple_Twist": 13.082, "simple_hRise": 3.764, "simple_hTwist": 13.541 }, { "index": 16, "nt1": "///A/2799", "nt2": "///A/2763", "bp": "C-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 4.335, -1.168, -0.521, 26.261, -2.836, 4.824 ], "step_params": [ 6.790, -5.955, 5.473, -50.961, 31.676, 90.646 ], "heli_params": [ -4.253, -5.084, 0.957, 20.629, 33.187, 104.980 ], "bp2_params": [ 0.186, -0.170, 0.114, 8.209, 10.994, 2.296 ], "groove_widths": [ 21.903, 14.547, 11.014, 9.731 ], "simple_Rise": 5.473, "simple_Twist": 114.446, "simple_hRise": 2.479, "simple_hTwist": 124.083 }, { "index": 17, "nt1": "///A/2800", "nt2": "///A/2672", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.186, -0.170, 0.114, 8.209, 10.994, 2.296 ], "step_params": [ -0.149, -1.957, 3.172, 5.526, 8.783, 34.703 ], "heli_params": [ -4.260, 0.937, 2.565, 14.333, -9.017, 36.175 ], "bp2_params": [ 0.166, -0.206, -0.539, 1.569, -0.056, 1.833 ], "groove_widths": [ 25.454, 14.518, 14.019, 9.979 ], "simple_Rise": 3.172, "simple_Twist": 34.865, "simple_hRise": 2.568, "simple_hTwist": 36.330 }, { "index": 18, "nt1": "///A/2801", "nt2": "///A/2671", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.166, -0.206, -0.539, 1.569, -0.056, 1.833 ], "step_params": [ -0.391, -1.838, 3.539, -1.182, 2.484, 26.629 ], "heli_params": [ -4.652, 0.520, 3.370, 5.375, 2.558, 26.768 ], "bp2_params": [ -0.103, -0.196, -0.821, 2.050, 2.849, 0.907 ], "groove_widths": [ 21.865, 15.006, 17.907, 12.727 ], "simple_Rise": 3.539, "simple_Twist": 28.217, "simple_hRise": 3.381, "simple_hTwist": 28.348 }, { "index": 19, "nt1": "///A/2802", "nt2": "///A/2670", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.103, -0.196, -0.821, 2.050, 2.849, 0.907 ], "step_params": [ 0.003, -2.077, 3.311, -4.856, 6.206, 33.227 ], "heli_params": [ -4.481, -0.741, 2.860, 10.667, 8.346, 34.123 ], "bp2_params": [ 0.165, -0.127, 0.113, 1.126, 4.470, 1.943 ], "groove_widths": [ 16.435, 14.584, 16.224, 14.565 ], "simple_Rise": 3.311, "simple_Twist": 31.575, "simple_hRise": 2.831, "simple_hTwist": 32.519 }, { "index": 20, "nt1": "///A/2803", "nt2": "///A/2669", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.165, -0.127, 0.113, 1.126, 4.470, 1.943 ], "step_params": [ -1.386, -1.317, 3.452, 1.945, 3.990, 53.579 ], "heli_params": [ -1.714, 1.659, 3.304, 4.418, -2.154, 53.749 ], "bp2_params": [ 6.926, -3.692, -0.169, 3.052, -4.219, -12.263 ], "groove_widths": [ 15.589, 13.129, 12.841, 12.321 ], "simple_Rise": 3.452, "simple_Twist": 12.024, "simple_hRise": 2.621, "simple_hTwist": 12.815 }, { "index": 21, "nt1": "///A/2804", "nt2": "///A/2668", "bp": "A-A", "name": "~Sheared", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.926, -3.692, -0.169, 3.052, -4.219, -12.263 ], "step_params": [ -0.566, -0.684, 3.649, 2.971, 3.114, 11.490 ], "heli_params": [ -7.330, 6.591, 3.109, 14.888, -14.205, 12.267 ], "bp2_params": [ -6.780, -4.199, -0.012, -14.159, 12.347, -2.308 ], "groove_widths": [ 17.300, 14.936, 11.157, 11.058 ], "simple_Rise": 3.649, "simple_Twist": 100.491, "simple_hRise": 3.619, "simple_hTwist": 100.558 }, { "index": 22, "nt1": "///A/2807", "nt2": "///A/2667", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.780, -4.199, -0.012, -14.159, 12.347, -2.308 ], "step_params": [ -1.823, -0.555, 3.409, -5.663, -13.022, 4.557 ], "heli_params": [ 12.358, 0.723, 2.221, -66.300, 28.833, 14.910 ], "bp2_params": [ -3.597, -1.540, 0.910, -3.970, -7.363, -100.176 ], "groove_widths": [ 17.988, 16.051, 12.394, 12.250 ], "simple_Rise": 3.409, "simple_Twist": -19.800, "simple_hRise": 2.067, "simple_hTwist": -24.325 }, { "index": 23, "nt1": "///A/2805", "nt2": "///A/2666", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -3.597, -1.540, 0.910, -3.970, -7.363, -100.176 ], "step_params": [ 4.674, -2.476, 3.393, 9.514, 13.781, 62.413 ], "heli_params": [ -2.949, -3.953, 3.443, 13.051, -9.009, 64.401 ], "bp2_params": [ -2.861, -0.791, -0.003, -2.511, -0.771, -8.951 ], "groove_widths": [ 16.077, 15.402, 20.945, 20.689 ], "simple_Rise": 3.393, "simple_Twist": 56.034, "simple_hRise": 3.435, "simple_hTwist": 58.288 }, { "index": 24, "nt1": "///A/2811", "nt2": "///A/2665", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.861, -0.791, -0.003, -2.511, -0.771, -8.951 ], "step_params": [ -0.297, -1.912, 3.534, 1.150, -0.911, 41.644 ], "heli_params": [ -2.584, 0.549, 3.564, -1.281, -1.617, 41.669 ], "bp2_params": [ 0.102, -0.181, -0.832, 1.980, -2.463, -2.704 ], "groove_widths": [ 15.952, 14.956, 16.385, 13.615 ], "simple_Rise": 3.534, "simple_Twist": 25.681, "simple_hRise": 3.582, "simple_hTwist": 25.722 }, { "index": 25, "nt1": "///A/2812", "nt2": "///A/2664", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.102, -0.181, -0.832, 1.980, -2.463, -2.704 ], "step_params": [ 0.057, -1.584, 3.458, -2.175, -3.742, 31.189 ], "heli_params": [ -2.162, -0.546, 3.606, -6.917, 4.022, 31.480 ], "bp2_params": [ -0.123, -0.022, -0.261, 4.315, -5.575, -5.374 ], "groove_widths": [ 16.700, 15.437, 15.818, 15.247 ], "simple_Rise": 3.458, "simple_Twist": 32.283, "simple_hRise": 3.602, "simple_hTwist": 32.564 }, { "index": 26, "nt1": "///A/2813", "nt2": "///A/2663", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.123, -0.022, -0.261, 4.315, -5.575, -5.374 ], "step_params": [ -0.080, -1.715, 3.374, -8.460, 13.766, 31.894 ], "heli_params": [ -4.669, -1.018, 2.401, 23.279, 14.305, 35.658 ], "bp2_params": [ -0.009, -0.150, 0.711, -3.576, 10.602, 1.436 ], "groove_widths": [ 17.396, 16.213, 17.554, 14.928 ], "simple_Rise": 3.374, "simple_Twist": 31.530, "simple_hRise": 2.388, "simple_hTwist": 35.335 }, { "index": 27, "nt1": "///A/2814", "nt2": "///A/2662", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.009, -0.150, 0.711, -3.576, 10.602, 1.436 ], "step_params": [ 0.505, -1.848, 3.178, -0.827, 4.575, 34.145 ], "heli_params": [ -3.785, -0.972, 2.901, 7.746, 1.401, 34.451 ], "bp2_params": [ -0.029, -0.111, 0.423, 2.867, 6.787, 3.161 ], "groove_widths": [ 17.647, 16.000, 18.334, 13.978 ], "simple_Rise": 3.178, "simple_Twist": 34.033, "simple_hRise": 2.900, "simple_hTwist": 34.340 }, { "index": 28, "nt1": "///A/2815", "nt2": "///A/2661", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.029, -0.111, 0.423, 2.867, 6.787, 3.161 ], "step_params": [ -0.917, -2.337, 3.060, -1.427, 3.304, 27.829 ], "heli_params": [ -5.522, 1.588, 2.812, 6.834, 2.951, 28.056 ], "bp2_params": [ 0.128, -0.178, 0.426, 4.627, 3.262, -0.615 ], "groove_widths": [ 17.303, null, 17.563, null ], "simple_Rise": 3.060, "simple_Twist": 26.624, "simple_hRise": 2.799, "simple_hTwist": 26.862 }, { "index": 29, "nt1": "///A/2816", "nt2": "///A/2660", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.128, -0.178, 0.426, 4.627, 3.262, -0.615 ], "step_params": [ -0.123, -1.987, 3.185, 2.288, 3.457, 36.266 ], "heli_params": [ -3.624, 0.495, 2.977, 5.531, -3.660, 36.494 ], "bp2_params": [ 0.209, -0.149, 0.214, 3.931, 3.928, 1.084 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.185, "simple_Twist": 36.172, "simple_hRise": 2.976, "simple_hTwist": 36.401 }, { "index": 30, "nt1": "///A/2817", "nt2": "///A/2659", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.209, -0.149, 0.214, 3.931, 3.928, 1.084 ], "step_params": [ 0.129, -2.355, 3.515, -0.345, 0.469, -0.744 ], "heli_params": [ 16.582, -85.158, 3.984, -30.635, -22.547, -0.944 ], "bp2_params": [ 0.247, -0.346, 0.966, 6.880, 5.303, 4.245 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.515, "simple_Twist": -1.104, "simple_hRise": 4.030, "simple_hTwist": -1.248 }, { "index": 31, "nt1": "///A/2818", "nt2": "///A/2918", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 84, "num_stems": 3, "strand1": "AGGAAGUAGAUCCCUGAA", "strand2": "GCCUUGAGCUAGGGACUA", "bp_type": ".||||...|||||||||.", "helix_form": ".AAAx.x.AA.xA..Ax", "helical_rise": 2.371, "helical_rise_std": 1.625, "helical_radius": 12.092, "helical_radius_std": 5.370, "helical_axis": [ 0.779, 0.627, -0.033 ], "point1": [ 133.683, 115.739, 223.441 ], "point2": [ 164.538, 140.577, 222.134 ], "num_pairs": 18, "pairs": [ { "index": 1, "nt1": "///A/2827", "nt2": "///A/2824", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.788, -4.130, -0.041, -7.272, -2.009, -7.927 ], "step_params": [ 1.111, -1.086, 3.063, 1.388, 1.272, 54.683 ], "heli_params": [ -1.253, -1.131, 3.064, 1.384, -1.510, 54.712 ], "bp2_params": [ -0.151, -0.205, -0.016, -4.078, 3.660, -1.900 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.063, "simple_Twist": 11.755, "simple_hRise": 3.038, "simple_hTwist": 11.904 }, { "index": 2, "nt1": "///A/2828", "nt2": "///A/2823", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.151, -0.205, -0.016, -4.078, 3.660, -1.900 ], "step_params": [ -0.504, -2.290, 3.240, -1.545, -5.647, 26.548 ], "heli_params": [ -3.358, 0.657, 3.662, -12.110, 3.312, 27.175 ], "bp2_params": [ -0.128, -0.231, 0.476, -3.122, -8.322, -3.869 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.240, "simple_Twist": 26.232, "simple_hRise": 3.666, "simple_hTwist": 26.866 }, { "index": 3, "nt1": "///A/2829", "nt2": "///A/2822", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.128, -0.231, 0.476, -3.122, -8.322, -3.869 ], "step_params": [ -0.393, -2.292, 3.000, -3.646, -2.548, 31.284 ], "heli_params": [ -3.760, 0.079, 3.197, -4.695, 6.718, 31.591 ], "bp2_params": [ 0.161, -0.447, 1.078, -1.827, -5.640, -5.771 ], "groove_widths": [ 16.119, null, 17.539, null ], "simple_Rise": 3.000, "simple_Twist": 29.373, "simple_hRise": 3.208, "simple_hTwist": 29.701 }, { "index": 4, "nt1": "///A/2830", "nt2": "///A/2821", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.161, -0.447, 1.078, -1.827, -5.640, -5.771 ], "step_params": [ -0.070, -1.937, 2.971, 5.335, 4.118, 42.833 ], "heli_params": [ -2.976, 0.552, 2.755, 5.597, -7.252, 43.335 ], "bp2_params": [ 0.268, -0.194, 0.799, 0.723, -2.339, -8.055 ], "groove_widths": [ 16.660, 15.652, 10.081, 10.025 ], "simple_Rise": 2.971, "simple_Twist": 42.934, "simple_hRise": 2.755, "simple_hTwist": 43.435 }, { "index": 5, "nt1": "///A/2831", "nt2": "///A/2820", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.268, -0.194, 0.799, 0.723, -2.339, -8.055 ], "step_params": [ -2.220, -2.290, 3.741, 15.630, 6.113, 54.648 ], "heli_params": [ -2.747, 3.213, 2.811, 6.489, -16.592, 56.977 ], "bp2_params": [ 2.513, 1.663, -0.844, -27.086, 3.871, -78.725 ], "groove_widths": [ 18.124, 15.960, 12.637, 12.611 ], "simple_Rise": 3.741, "simple_Twist": 44.667, "simple_hRise": 2.554, "simple_hTwist": 47.565 }, { "index": 6, "nt1": "///A/2832", "nt2": "///A/2917", "bp": "G-G", "name": "--", "Saenger": "--", "LW": ".WH", "DSSR": ".W-M", "bp1_params": [ 2.513, 1.663, -0.844, -27.086, 3.871, -78.725 ], "step_params": [ -1.054, -1.983, 3.058, -10.299, 6.793, 43.656 ], "heli_params": [ -3.137, 0.518, 2.898, 8.924, 13.530, 45.283 ], "bp2_params": [ 4.591, -2.969, 0.285, 3.986, -1.715, -82.572 ], "groove_widths": [ 20.465, 16.379, 9.930, 9.907 ], "simple_Rise": 3.058, "simple_Twist": 25.281, "simple_hRise": 2.666, "simple_hTwist": 28.087 }, { "index": 7, "nt1": "///A/2833", "nt2": "///A/2916", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 4.591, -2.969, 0.285, 3.986, -1.715, -82.572 ], "step_params": [ 1.645, -0.718, 6.294, -3.960, 24.685, 21.204 ], "heli_params": [ -9.044, -4.170, 3.384, 49.676, 7.969, 32.672 ], "bp2_params": [ -6.622, -3.558, -0.649, 1.038, -3.415, -2.725 ], "groove_widths": [ 21.157, 17.973, 7.110, 7.067 ], "simple_Rise": 6.294, "simple_Twist": 92.828, "simple_hRise": 5.969, "simple_hTwist": 95.387 }, { "index": 8, "nt1": "///A/2835", "nt2": "///A/2915", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.622, -3.558, -0.649, 1.038, -3.415, -2.725 ], "step_params": [ 1.014, -0.775, 4.060, -1.140, 0.622, 55.585 ], "heli_params": [ -0.875, -1.168, 4.032, 0.667, 1.222, 55.599 ], "bp2_params": [ -0.175, -0.123, 0.282, -3.693, -4.733, 1.612 ], "groove_widths": [ 18.568, 16.584, 8.180, 8.159 ], "simple_Rise": 4.060, "simple_Twist": 14.396, "simple_hRise": 3.931, "simple_hTwist": 14.454 }, { "index": 9, "nt1": "///A/2836", "nt2": "///A/2914", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.175, -0.123, 0.282, -3.693, -4.733, 1.612 ], "step_params": [ 0.198, -1.829, 3.367, 1.678, -0.693, 30.056 ], "heli_params": [ -3.375, -0.025, 3.413, -1.336, -3.231, 30.109 ], "bp2_params": [ 0.025, -0.090, -0.021, -4.109, -2.787, 1.235 ], "groove_widths": [ 16.205, 14.499, 16.352, 15.360 ], "simple_Rise": 3.367, "simple_Twist": 28.887, "simple_hRise": 3.415, "simple_hTwist": 28.943 }, { "index": 10, "nt1": "///A/2837", "nt2": "///A/2913", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.025, -0.090, -0.021, -4.109, -2.787, 1.235 ], "step_params": [ 0.490, -1.755, 3.591, -2.246, -0.969, 32.067 ], "heli_params": [ -2.978, -1.327, 3.599, -1.751, 4.058, 32.158 ], "bp2_params": [ 0.004, -0.095, 0.237, -8.145, -3.635, 2.782 ], "groove_widths": [ 15.982, 14.527, 20.594, 19.173 ], "simple_Rise": 3.591, "simple_Twist": 32.012, "simple_hRise": 3.599, "simple_hTwist": 32.103 }, { "index": 11, "nt1": "///A/2838", "nt2": "///A/2912", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.004, -0.095, 0.237, -8.145, -3.635, 2.782 ], "step_params": [ -0.374, -1.849, 3.416, -7.100, -2.027, 34.583 ], "heli_params": [ -2.724, -0.509, 3.521, -3.363, 11.777, 35.339 ], "bp2_params": [ 0.403, -0.642, 1.532, -16.547, 5.304, 0.524 ], "groove_widths": [ 17.261, 15.167, 13.291, 13.131 ], "simple_Rise": 3.416, "simple_Twist": 32.454, "simple_hRise": 3.523, "simple_hTwist": 33.262 }, { "index": 12, "nt1": "///A/2839", "nt2": "///A/2911", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.403, -0.642, 1.532, -16.547, 5.304, 0.524 ], "step_params": [ 3.470, -2.005, 4.572, -24.645, 20.970, 68.148 ], "heli_params": [ -2.427, -3.771, 2.726, 17.742, 20.851, 74.593 ], "bp2_params": [ 0.170, -0.196, 0.558, 2.700, -8.489, -2.702 ], "groove_widths": [ 19.811, 16.604, 14.580, 14.003 ], "simple_Rise": 4.572, "simple_Twist": 69.398, "simple_hRise": 2.769, "simple_hTwist": 75.705 }, { "index": 13, "nt1": "///A/2840", "nt2": "///A/2856", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.170, -0.196, 0.558, 2.700, -8.489, -2.702 ], "step_params": [ -0.101, -2.122, 3.238, -6.347, -9.277, 30.377 ], "heli_params": [ -2.022, -1.041, 3.659, -16.990, 11.624, 32.344 ], "bp2_params": [ 0.231, -0.197, 0.537, 7.809, -0.250, 1.601 ], "groove_widths": [ 22.418, 15.719, 14.880, 9.518 ], "simple_Rise": 3.238, "simple_Twist": 30.046, "simple_hRise": 3.661, "simple_hTwist": 32.035 }, { "index": 14, "nt1": "///A/2841", "nt2": "///A/2855", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.231, -0.197, 0.537, 7.809, -0.250, 1.601 ], "step_params": [ -1.583, -2.612, 3.244, 0.596, 30.492, 31.436 ], "heli_params": [ -5.548, 2.174, 0.566, 45.171, -0.883, 43.529 ], "bp2_params": [ -0.164, -0.051, -0.299, -11.064, -13.662, -2.591 ], "groove_widths": [ 20.674, 15.514, 16.565, 9.725 ], "simple_Rise": 3.244, "simple_Twist": 32.973, "simple_hRise": 0.670, "simple_hTwist": 44.625 }, { "index": 15, "nt1": "///A/2842", "nt2": "///A/2854", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.164, -0.051, -0.299, -11.064, -13.662, -2.591 ], "step_params": [ 0.757, -2.247, 3.215, -6.252, -2.840, 24.374 ], "heli_params": [ -4.309, -3.532, 3.162, -6.563, 14.446, 25.309 ], "bp2_params": [ -0.180, -0.242, 0.702, -0.624, 0.465, 0.089 ], "groove_widths": [ 17.045, null, 16.700, null ], "simple_Rise": 3.215, "simple_Twist": 25.083, "simple_hRise": 3.167, "simple_hTwist": 25.992 }, { "index": 16, "nt1": "///A/2843", "nt2": "///A/2853", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.180, -0.242, 0.702, -0.624, 0.465, 0.089 ], "step_params": [ -0.446, -1.714, 3.244, 1.722, 1.242, 34.697 ], "heli_params": [ -3.055, 1.003, 3.158, 2.080, -2.884, 34.760 ], "bp2_params": [ 0.058, -0.159, 0.744, 1.542, -1.180, -3.388 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.244, "simple_Twist": 33.342, "simple_hRise": 3.154, "simple_hTwist": 33.407 }, { "index": 17, "nt1": "///A/2844", "nt2": "///A/2852", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.058, -0.159, 0.744, 1.542, -1.180, -3.388 ], "step_params": [ 0.628, 0.177, 3.454, 2.823, -3.433, 79.540 ], "heli_params": [ 0.235, -0.411, 3.462, -2.681, -2.205, 79.643 ], "bp2_params": [ 6.228, -0.581, 0.558, -5.607, -5.052, 52.583 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.454, "simple_Twist": 37.460, "simple_hRise": 3.461, "simple_hTwist": 37.714 }, { "index": 18, "nt1": "///A/2846", "nt2": "///A/2851", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cSW", "DSSR": "cm-W" } ] }, { "index": 85, "num_stems": 4, "strand1": "GUAGGUCUGGGUGGGUGUGG", "strand2": "AAUCUAGACUCGAGUACACA", "bp_type": ".|||||||||||..|||||.", "helix_form": "xAAx.AA.x...xx.AAA.", "helical_rise": 3.236, "helical_rise_std": 1.426, "helical_radius": 9.923, "helical_radius_std": 4.068, "helical_axis": [ 0.927, 0.201, 0.318 ], "point1": [ 162.261, 131.234, 243.957 ], "point2": [ 219.415, 143.624, 263.573 ], "num_pairs": 20, "pairs": [ { "index": 1, "nt1": "///A/2859", "nt2": "///A/2908", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.457, -3.038, -0.898, -8.850, -4.640, -9.181 ], "step_params": [ -2.963, -0.798, 3.858, -7.077, 8.607, 18.510 ], "heli_params": [ -6.572, 4.262, 3.962, 24.128, 19.840, 21.580 ], "bp2_params": [ -0.199, -0.085, -0.603, -7.990, 5.004, -4.372 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.858, "simple_Twist": 58.368, "simple_hRise": 4.017, "simple_hTwist": 59.330 }, { "index": 2, "nt1": "///A/2861", "nt2": "///A/2907", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.199, -0.085, -0.603, -7.990, 5.004, -4.372 ], "step_params": [ 0.351, -1.535, 3.247, -3.684, 5.783, 28.888 ], "heli_params": [ -4.144, -1.416, 2.828, 11.391, 7.256, 29.674 ], "bp2_params": [ 0.151, -0.054, -0.011, -1.882, 6.959, -1.924 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.247, "simple_Twist": 27.417, "simple_hRise": 2.801, "simple_hTwist": 28.245 }, { "index": 3, "nt1": "///A/2862", "nt2": "///A/2906", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.151, -0.054, -0.011, -1.882, 6.959, -1.924 ], "step_params": [ 0.898, -1.990, 3.072, 0.024, 3.232, 33.792 ], "heli_params": [ -3.880, -1.535, 2.876, 5.545, -0.040, 33.942 ], "bp2_params": [ -0.125, -0.153, 0.036, -0.682, 7.287, -0.420 ], "groove_widths": [ 17.167, null, 12.120, null ], "simple_Rise": 3.072, "simple_Twist": 35.439, "simple_hRise": 2.886, "simple_hTwist": 35.581 }, { "index": 4, "nt1": "///A/2863", "nt2": "///A/2905", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.125, -0.153, 0.036, -0.682, 7.287, -0.420 ], "step_params": [ 3.087, -1.259, 2.786, -5.662, 6.806, 41.506 ], "heli_params": [ -2.269, -4.708, 2.143, 9.474, 7.881, 42.398 ], "bp2_params": [ -3.491, -1.113, 0.494, 2.160, -0.154, -3.809 ], "groove_widths": [ 16.665, 14.539, 12.236, 10.546 ], "simple_Rise": 2.786, "simple_Twist": 60.108, "simple_hRise": 2.373, "simple_hTwist": 60.696 }, { "index": 5, "nt1": "///A/2864", "nt2": "///A/2903", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -3.491, -1.113, 0.494, 2.160, -0.154, -3.809 ], "step_params": [ -0.064, -1.270, 3.150, -4.306, 2.727, 52.908 ], "heli_params": [ -1.586, -0.191, 3.082, 3.053, 4.821, 53.136 ], "bp2_params": [ -0.159, -0.171, 0.735, 1.396, -2.244, -3.461 ], "groove_widths": [ 18.120, 14.903, 12.455, 9.927 ], "simple_Rise": 3.150, "simple_Twist": 33.974, "simple_hRise": 3.027, "simple_hTwist": 34.343 }, { "index": 6, "nt1": "///A/2865", "nt2": "///A/2902", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.159, -0.171, 0.735, 1.396, -2.244, -3.461 ], "step_params": [ 0.005, -1.479, 3.008, 2.183, 3.353, 35.482 ], "heli_params": [ -2.849, 0.275, 2.856, 5.480, -3.568, 35.699 ], "bp2_params": [ 0.185, -0.159, 0.477, 2.676, 1.623, -0.118 ], "groove_widths": [ 18.191, 15.533, 12.829, 8.458 ], "simple_Rise": 3.008, "simple_Twist": 33.456, "simple_hRise": 2.845, "simple_hTwist": 33.688 }, { "index": 7, "nt1": "///A/2866", "nt2": "///A/2901", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.185, -0.159, 0.477, 2.676, 1.623, -0.118 ], "step_params": [ 0.302, -1.930, 3.082, 0.474, 2.766, 33.441 ], "heli_params": [ -3.760, -0.451, 2.921, 4.796, -0.822, 33.555 ], "bp2_params": [ 0.071, -0.156, 0.434, 3.869, 1.369, 0.824 ], "groove_widths": [ 18.329, 15.009, 15.219, 8.979 ], "simple_Rise": 3.082, "simple_Twist": 34.511, "simple_hRise": 2.927, "simple_hTwist": 34.621 }, { "index": 8, "nt1": "///A/2867", "nt2": "///A/2900", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.071, -0.156, 0.434, 3.869, 1.369, 0.824 ], "step_params": [ 0.712, -2.349, 3.499, 13.454, 9.777, 28.234 ], "heli_params": [ -5.885, 1.089, 2.632, 18.184, -25.023, 32.682 ], "bp2_params": [ -0.224, -0.225, -0.808, -2.920, -2.517, 1.004 ], "groove_widths": [ 20.179, 14.550, 11.582, 11.561 ], "simple_Rise": 3.499, "simple_Twist": 29.503, "simple_hRise": 2.679, "simple_hTwist": 33.777 }, { "index": 9, "nt1": "///A/2868", "nt2": "///A/2899", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.224, -0.225, -0.808, -2.920, -2.517, 1.004 ], "step_params": [ 1.513, -1.254, 7.215, -14.021, 25.945, 82.813 ], "heli_params": [ -2.144, -1.765, 6.427, 19.090, 10.317, 87.007 ], "bp2_params": [ -1.703, -0.501, -1.172, -11.927, -5.779, -5.480 ], "groove_widths": [ 20.957, 15.646, 11.730, 11.534 ], "simple_Rise": 7.215, "simple_Twist": 90.763, "simple_hRise": 6.554, "simple_hTwist": 94.430 }, { "index": 10, "nt1": "///A/2870", "nt2": "///A/2896", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.703, -0.501, -1.172, -11.927, -5.779, -5.480 ], "step_params": [ -0.562, -1.398, 3.770, -2.654, 0.372, 35.955 ], "heli_params": [ -2.320, 0.473, 3.786, 0.601, 4.292, 36.052 ], "bp2_params": [ -0.128, -0.242, -1.010, -9.266, 0.413, -1.686 ], "groove_widths": [ 22.897, 16.336, 11.957, 11.895 ], "simple_Rise": 3.770, "simple_Twist": 27.648, "simple_hRise": 3.787, "simple_hTwist": 27.775 }, { "index": 11, "nt1": "///A/2871", "nt2": "///A/2895", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.128, -0.242, -1.010, -9.266, 0.413, -1.686 ], "step_params": [ 0.220, -0.946, 3.264, -3.914, 2.760, 38.339 ], "heli_params": [ -1.765, -0.807, 3.154, 4.182, 5.931, 38.626 ], "bp2_params": [ 2.173, -0.296, 0.232, 2.941, 4.428, -6.169 ], "groove_widths": [ 20.954, 16.695, 13.035, 12.636 ], "simple_Rise": 3.264, "simple_Twist": 25.987, "simple_hRise": 3.083, "simple_hTwist": 26.417 }, { "index": 12, "nt1": "///A/2872", "nt2": "///A/2894", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.173, -0.296, 0.232, 2.941, 4.428, -6.169 ], "step_params": [ 1.432, -1.046, 2.922, 0.863, 2.444, 45.424 ], "heli_params": [ -1.543, -1.784, 2.890, 3.162, -1.117, 45.494 ], "bp2_params": [ 6.839, -4.149, 0.124, 13.251, -1.018, -4.810 ], "groove_widths": [ 16.316, 15.149, 23.869, 22.082 ], "simple_Rise": 2.922, "simple_Twist": 11.912, "simple_hRise": 2.747, "simple_hTwist": 12.190 }, { "index": 13, "nt1": "///A/2873", "nt2": "///A/2893", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.839, -4.149, 0.124, 13.251, -1.018, -4.810 ], "step_params": [ -1.351, -5.626, 5.062, 8.101, -1.883, -86.150 ], "heli_params": [ 4.171, -0.708, 5.050, 1.376, 5.919, -86.472 ], "bp2_params": [ 3.506, 8.197, -0.078, 10.225, -11.058, 177.894 ], "groove_widths": [ 16.862, 15.694, 22.977, 22.871 ], "simple_Rise": 5.062, "simple_Twist": 24.274, "simple_hRise": 4.783, "simple_hTwist": 25.639 }, { "index": 14, "nt1": "///A/2874", "nt2": "///A/2891", "bp": "G+G", "name": "--", "Saenger": "04-IV", "LW": "tSS", "DSSR": "tm+m", "bp1_params": [ 3.506, 8.197, -0.078, 10.225, -11.058, 177.894 ], "step_params": [ -7.298, -3.184, 2.882, -1.800, -7.165, 125.210 ], "heli_params": [ -1.738, 4.094, 3.043, -4.033, 1.013, 125.333 ], "bp2_params": [ -1.499, -0.653, -1.695, -22.221, -6.645, -4.127 ], "groove_widths": [ 21.302, 20.177, 18.880, 17.966 ], "simple_Rise": 2.882, "simple_Twist": 67.861, "simple_hRise": 3.333, "simple_hTwist": 68.214 }, { "index": 15, "nt1": "///A/2877", "nt2": "///A/2890", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.499, -0.653, -1.695, -22.221, -6.645, -4.127 ], "step_params": [ -0.072, -0.456, 2.796, -5.379, 5.246, 33.226 ], "heli_params": [ -1.487, -0.603, 2.674, 9.030, 9.260, 34.041 ], "bp2_params": [ -0.253, -0.359, -1.391, -0.601, -0.215, -2.918 ], "groove_widths": [ 21.114, 17.869, 10.532, 10.003 ], "simple_Rise": 2.796, "simple_Twist": 26.584, "simple_hRise": 2.623, "simple_hTwist": 27.607 }, { "index": 16, "nt1": "///A/2878", "nt2": "///A/2889", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.253, -0.359, -1.391, -0.601, -0.215, -2.918 ], "step_params": [ 0.376, -1.079, 3.790, -9.663, 18.977, 30.119 ], "heli_params": [ -4.463, -1.998, 2.483, 31.982, 16.285, 36.744 ], "bp2_params": [ -0.192, -0.221, -0.662, -6.533, -4.746, 0.441 ], "groove_widths": [ 18.051, 14.858, 15.188, 12.564 ], "simple_Rise": 3.790, "simple_Twist": 29.955, "simple_hRise": 2.475, "simple_hTwist": 36.612 }, { "index": 17, "nt1": "///A/2879", "nt2": "///A/2888", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.192, -0.221, -0.662, -6.533, -4.746, 0.441 ], "step_params": [ -0.042, -1.373, 3.092, -2.540, 1.526, 33.136 ], "heli_params": [ -2.637, -0.324, 3.023, 2.669, 4.443, 33.265 ], "bp2_params": [ 0.026, -0.186, -0.551, -0.219, -3.363, 3.114 ], "groove_widths": [ 17.774, null, 16.851, null ], "simple_Rise": 3.092, "simple_Twist": 31.907, "simple_hRise": 3.019, "simple_hTwist": 32.041 }, { "index": 18, "nt1": "///A/2880", "nt2": "///A/2887", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.026, -0.186, -0.551, -0.219, -3.363, 3.114 ], "step_params": [ -0.137, -1.639, 3.684, -0.369, 17.142, 33.657 ], "heli_params": [ -4.801, 0.164, 2.582, 27.501, 0.592, 37.660 ], "bp2_params": [ -0.091, -0.234, -0.781, -6.624, 8.539, -1.418 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.684, "simple_Twist": 34.725, "simple_hRise": 2.622, "simple_hTwist": 38.610 }, { "index": 19, "nt1": "///A/2881", "nt2": "///A/2886", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.091, -0.234, -0.781, -6.624, 8.539, -1.418 ], "step_params": [ -4.125, -1.149, 2.884, -3.370, 14.581, 56.997 ], "heli_params": [ -1.833, 4.050, 2.760, 14.996, 3.466, 58.769 ], "bp2_params": [ 8.375, -5.286, 0.554, 14.893, -6.732, -44.791 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.884, "simple_Twist": 3.808, "simple_hRise": 0.529, "simple_hTwist": 15.440 }, { "index": 20, "nt1": "///A/2882", "nt2": "///A/2885", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "tSH", "DSSR": "tm-M" } ] }, { "index": 86, "num_stems": 1, "strand1": "UGGUGGC", "strand2": "ACCGCCG", "bp_type": "|||||||", "helix_form": "....AA", "helical_rise": 2.656, "helical_rise_std": 0.248, "helical_radius": 10.286, "helical_radius_std": 1.069, "helical_axis": [ 0.572, 0.008, 0.820 ], "point1": [ 169.413, 158.690, 70.833 ], "point2": [ 178.361, 158.813, 83.658 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///B/3", "nt2": "///B/113", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.028, -0.106, -0.442, 5.801, 0.214, -7.818 ], "step_params": [ -1.702, -1.569, 3.225, -12.458, -0.878, 26.889 ], "heli_params": [ -2.865, 0.408, 3.684, -1.772, 25.141, 29.599 ], "bp2_params": [ -0.179, -0.265, 0.284, -0.429, -12.630, -1.237 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.225, "simple_Twist": 27.442, "simple_hRise": 3.682, "simple_hTwist": 30.101 }, { "index": 2, "nt1": "///B/4", "nt2": "///B/112", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.179, -0.265, 0.284, -0.429, -12.630, -1.237 ], "step_params": [ -1.272, -2.119, 3.846, -1.558, -0.512, 28.747 ], "heli_params": [ -4.124, 2.143, 3.944, -1.030, 3.135, 28.793 ], "bp2_params": [ -0.184, -0.385, -1.281, -7.316, -5.320, 1.686 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.846, "simple_Twist": 28.688, "simple_hRise": 3.944, "simple_hTwist": 28.734 }, { "index": 3, "nt1": "///B/5", "nt2": "///B/111", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.184, -0.385, -1.281, -7.316, -5.320, 1.686 ], "step_params": [ 0.321, -1.006, 3.178, -4.052, 1.973, 42.075 ], "heli_params": [ -1.587, -0.842, 3.087, 2.738, 5.625, 42.305 ], "bp2_params": [ 1.743, -0.880, -1.209, 2.187, -3.254, -2.527 ], "groove_widths": [ 16.524, null, 19.802, null ], "simple_Rise": 3.178, "simple_Twist": 31.455, "simple_hRise": 3.046, "simple_hTwist": 31.768 }, { "index": 4, "nt1": "///B/6", "nt2": "///B/110", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.743, -0.880, -1.209, 2.187, -3.254, -2.527 ], "step_params": [ 0.147, -3.131, 3.910, 1.291, 8.886, 10.840 ], "heli_params": [ -19.997, 0.448, 1.058, 39.323, -5.715, 14.068 ], "bp2_params": [ -0.258, -0.250, -0.629, -2.713, -3.351, 2.294 ], "groove_widths": [ 16.624, null, 18.423, null ], "simple_Rise": 3.910, "simple_Twist": 21.836, "simple_hRise": 2.466, "simple_hTwist": 23.590 }, { "index": 5, "nt1": "///B/7", "nt2": "///B/109", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.258, -0.250, -0.629, -2.713, -3.351, 2.294 ], "step_params": [ -0.295, -1.474, 3.151, -0.974, 7.516, 32.861 ], "heli_params": [ -3.662, 0.364, 2.764, 13.070, 1.693, 33.700 ], "bp2_params": [ -0.105, -0.287, -0.777, -2.260, 2.336, -2.119 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.151, "simple_Twist": 32.389, "simple_hRise": 2.757, "simple_hTwist": 33.241 }, { "index": 6, "nt1": "///B/8", "nt2": "///B/108", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.105, -0.287, -0.777, -2.260, 2.336, -2.119 ], "step_params": [ 0.420, -1.277, 2.985, 0.840, 3.095, 29.801 ], "heli_params": [ -3.041, -0.657, 2.852, 5.997, -1.627, 29.969 ], "bp2_params": [ 0.128, -0.224, -0.719, 6.935, -1.497, -0.915 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.985, "simple_Twist": 27.934, "simple_hRise": 2.841, "simple_hTwist": 28.114 }, { "index": 7, "nt1": "///B/9", "nt2": "///B/107", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 87, "num_stems": 5, "strand1": "CUGGGUUGCUCUUCGCCCGAUGGUAGUCGGGGG", "strand2": "GGCCCACGGAGAAGCGGGAUGAGAGUGUCCCCC", "bp_type": "|.||.|..||||||||||........|.|||||", "helix_form": "xx.x..x...AA.xAxA...........AAAA", "helical_rise": 2.696, "helical_rise_std": 2.721, "helical_radius": 12.683, "helical_radius_std": 6.748, "helical_axis": [ -0.043, -0.440, 0.897 ], "point1": [ 182.242, 163.881, 61.375 ], "point2": [ 178.523, 126.050, 138.526 ], "num_pairs": 33, "pairs": [ { "index": 1, "nt1": "///B/36", "nt2": "///B/42", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.051, -0.538, -1.368, -1.891, 1.198, -3.829 ], "step_params": [ 0.857, 1.587, 8.870, 22.487, -38.447, 172.880 ], "heli_params": [ 0.885, -0.376, 8.846, -19.257, -11.263, 173.412 ], "bp2_params": [ -8.305, -2.864, 1.188, 41.142, 14.330, -27.152 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 8.870, "simple_Twist": 66.014, "simple_hRise": 7.189, "simple_hTwist": 78.199 }, { "index": 2, "nt1": "///B/33", "nt2": "///B/31", "bp": "U+G", "name": "--", "Saenger": "--", "LW": "cHS", "DSSR": "cM+m", "bp1_params": [ -8.305, -2.864, 1.188, 41.142, 14.330, -27.152 ], "step_params": [ -3.365, -3.068, 3.862, 14.854, 23.542, -169.884 ], "heli_params": [ 1.504, -1.667, 3.955, -11.815, 7.455, -170.182 ], "bp2_params": [ -0.182, -0.225, 0.106, 3.429, -1.663, 1.708 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.862, "simple_Twist": -62.069, "simple_hRise": 5.216, "simple_hTwist": -67.452 }, { "index": 3, "nt1": "///B/48", "nt2": "///B/30", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.182, -0.225, 0.106, 3.429, -1.663, 1.708 ], "step_params": [ 0.007, -1.431, 3.369, 0.438, 0.993, 38.079 ], "heli_params": [ -2.322, 0.047, 3.332, 1.522, -0.671, 38.093 ], "bp2_params": [ -0.280, -0.255, -0.855, 2.529, 1.639, 0.097 ], "groove_widths": [ 22.120, null, 18.959, null ], "simple_Rise": 3.369, "simple_Twist": 38.085, "simple_hRise": 3.332, "simple_hTwist": 38.100 }, { "index": 4, "nt1": "///B/49", "nt2": "///B/29", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.280, -0.255, -0.855, 2.529, 1.639, 0.097 ], "step_params": [ -5.187, -2.098, 5.301, 20.084, 12.894, 80.061 ], "heli_params": [ -2.035, 4.619, 3.833, 9.827, -15.306, 82.965 ], "bp2_params": [ 0.563, -2.905, -2.936, -8.306, 0.248, -10.403 ], "groove_widths": [ 16.734, 9.635, 15.985, 15.828 ], "simple_Rise": 5.301, "simple_Twist": 75.682, "simple_hRise": 3.708, "simple_hTwist": 78.815 }, { "index": 5, "nt1": "///B/52", "nt2": "///B/28", "bp": "G-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.563, -2.905, -2.936, -8.306, 0.248, -10.403 ], "step_params": [ 0.838, -0.697, 3.712, -0.815, 1.479, 27.475 ], "heli_params": [ -1.873, -1.985, 3.644, 3.110, 1.714, 27.526 ], "bp2_params": [ 0.929, -1.039, -1.578, -2.988, 1.969, -3.102 ], "groove_widths": [ 14.586, 12.274, 17.481, 16.072 ], "simple_Rise": 3.712, "simple_Twist": 25.132, "simple_hRise": 3.637, "simple_hTwist": 25.188 }, { "index": 6, "nt1": "///B/53", "nt2": "///B/27", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.929, -1.039, -1.578, -2.988, 1.969, -3.102 ], "step_params": [ -1.513, -0.663, 3.400, -4.564, 10.113, 5.546 ], "heli_params": [ -15.941, 1.198, 1.539, 57.900, 26.127, 12.400 ], "bp2_params": [ -4.342, -1.016, 0.130, 11.350, -16.119, -14.944 ], "groove_widths": [ 13.335, 12.033, 14.898, 11.667 ], "simple_Rise": 3.400, "simple_Twist": 34.537, "simple_hRise": 3.252, "simple_hTwist": 36.224 }, { "index": 7, "nt1": "///B/54", "nt2": "///B/26", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -4.342, -1.016, 0.130, 11.350, -16.119, -14.944 ], "step_params": [ -2.037, 2.680, 3.535, -22.822, -21.076, 107.864 ], "heli_params": [ 1.904, 0.938, 3.408, -12.874, 13.940, 110.883 ], "bp2_params": [ -2.383, 0.662, -2.298, -19.672, -37.350, -50.410 ], "groove_widths": [ 12.766, 12.280, 15.262, 7.754 ], "simple_Rise": 3.535, "simple_Twist": 93.747, "simple_hRise": 3.350, "simple_hTwist": 97.607 }, { "index": 8, "nt1": "///B/57", "nt2": "///B/22", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "c.W", "DSSR": "c.-W", "bp1_params": [ -2.383, 0.662, -2.298, -19.672, -37.350, -50.410 ], "step_params": [ 2.574, 0.409, 3.656, -11.047, -4.755, 46.089 ], "heli_params": [ 0.900, -4.105, 2.946, -5.955, 13.835, 47.549 ], "bp2_params": [ 0.163, -0.255, -0.619, -16.397, -6.831, 2.687 ], "groove_widths": [ 15.115, 12.410, 13.860, 10.080 ], "simple_Rise": 3.656, "simple_Twist": 35.177, "simple_hRise": 2.679, "simple_hTwist": 37.115 }, { "index": 9, "nt1": "///B/58", "nt2": "///B/21", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.163, -0.255, -0.619, -16.397, -6.831, 2.687 ], "step_params": [ 0.374, -1.124, 3.246, -3.583, 0.192, 30.827 ], "heli_params": [ -2.138, -1.377, 3.176, 0.360, 6.711, 31.030 ], "bp2_params": [ -0.077, -0.091, 0.344, -6.269, -1.674, 4.132 ], "groove_widths": [ 17.473, 14.638, 13.313, 12.768 ], "simple_Rise": 3.246, "simple_Twist": 32.382, "simple_hRise": 3.181, "simple_hTwist": 32.574 }, { "index": 10, "nt1": "///B/59", "nt2": "///B/20", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.077, -0.091, 0.344, -6.269, -1.674, 4.132 ], "step_params": [ 1.010, -2.679, 2.781, 11.182, 5.798, 32.836 ], "heli_params": [ -5.165, -0.277, 2.489, 9.818, -18.936, 35.107 ], "bp2_params": [ 0.152, -0.239, -0.718, 2.699, -0.014, 0.213 ], "groove_widths": [ 17.101, 15.189, 15.571, 12.321 ], "simple_Rise": 2.781, "simple_Twist": 31.823, "simple_hRise": 2.475, "simple_hTwist": 34.165 }, { "index": 11, "nt1": "///B/60", "nt2": "///B/19", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.152, -0.239, -0.718, 2.699, -0.014, 0.213 ], "step_params": [ -0.022, -1.828, 3.085, -1.916, 27.483, 35.542 ], "heli_params": [ -4.346, -0.106, 1.390, 38.679, 2.696, 44.695 ], "bp2_params": [ -0.044, -0.222, -0.312, -1.817, 1.180, 5.631 ], "groove_widths": [ 17.522, 14.745, 19.156, 14.812 ], "simple_Rise": 3.085, "simple_Twist": 36.582, "simple_hRise": 1.439, "simple_hTwist": 45.510 }, { "index": 12, "nt1": "///B/61", "nt2": "///B/18", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.044, -0.222, -0.312, -1.817, 1.180, 5.631 ], "step_params": [ -0.303, -1.320, 2.965, 0.906, 11.148, 31.138 ], "heli_params": [ -3.905, 0.661, 2.356, 19.977, -1.623, 33.040 ], "bp2_params": [ -0.102, -0.223, -0.402, 6.917, 9.873, -0.315 ], "groove_widths": [ 18.915, 16.062, 17.911, 12.404 ], "simple_Rise": 2.965, "simple_Twist": 31.464, "simple_hRise": 2.364, "simple_hTwist": 33.345 }, { "index": 13, "nt1": "///B/62", "nt2": "///B/17", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.102, -0.223, -0.402, 6.917, 9.873, -0.315 ], "step_params": [ -0.486, -2.160, 3.206, 0.984, 7.096, 29.930 ], "heli_params": [ -5.327, 1.091, 2.619, 13.497, -1.872, 30.756 ], "bp2_params": [ 0.229, -0.222, -0.892, 9.086, -3.066, 2.878 ], "groove_widths": [ 18.504, 15.719, 15.865, 13.435 ], "simple_Rise": 3.206, "simple_Twist": 28.403, "simple_hRise": 2.584, "simple_hTwist": 29.274 }, { "index": 14, "nt1": "///B/63", "nt2": "///B/16", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.229, -0.222, -0.892, 9.086, -3.066, 2.878 ], "step_params": [ -1.477, -1.216, 3.869, -1.095, 4.855, 40.206 ], "heli_params": [ -2.390, 1.991, 3.741, 7.030, 1.585, 40.501 ], "bp2_params": [ -0.169, -0.246, -0.606, -3.309, -2.137, 2.824 ], "groove_widths": [ 17.935, 13.301, 14.780, 13.963 ], "simple_Rise": 3.869, "simple_Twist": 42.459, "simple_hRise": 3.749, "simple_hTwist": 42.736 }, { "index": 15, "nt1": "///B/65", "nt2": "///B/15", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.169, -0.246, -0.606, -3.309, -2.137, 2.824 ], "step_params": [ -0.281, -1.841, 3.199, 0.266, 0.408, 37.906 ], "heli_params": [ -2.885, 0.466, 3.178, 0.628, -0.409, 37.909 ], "bp2_params": [ 0.187, -0.280, -0.649, -4.223, 0.805, 0.640 ], "groove_widths": [ 19.082, 13.185, 12.630, 9.846 ], "simple_Rise": 3.199, "simple_Twist": 35.724, "simple_hRise": 3.177, "simple_hTwist": 35.727 }, { "index": 16, "nt1": "///B/66", "nt2": "///B/14", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.187, -0.280, -0.649, -4.223, 0.805, 0.640 ], "step_params": [ 4.688, -2.793, 7.356, -6.244, 0.759, 96.281 ], "heli_params": [ -1.902, -3.380, 7.102, 0.509, 4.189, 96.435 ], "bp2_params": [ 0.165, -0.223, -0.829, -1.904, -1.585, 1.344 ], "groove_widths": [ 20.293, 13.449, 12.556, 12.553 ], "simple_Rise": 7.356, "simple_Twist": 96.224, "simple_hRise": 7.102, "simple_hTwist": 96.378 }, { "index": 17, "nt1": "///B/68", "nt2": "///B/104", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.165, -0.223, -0.829, -1.904, -1.585, 1.344 ], "step_params": [ 0.577, -2.025, 3.504, -3.057, -2.136, 31.423 ], "heli_params": [ -3.287, -1.670, 3.560, -3.927, 5.619, 31.638 ], "bp2_params": [ 0.161, -0.158, -0.079, -1.330, 1.450, 0.837 ], "groove_widths": [ 21.555, 12.159, 13.125, 13.051 ], "simple_Rise": 3.504, "simple_Twist": 31.365, "simple_hRise": 3.560, "simple_hTwist": 31.580 }, { "index": 18, "nt1": "///B/69", "nt2": "///B/103", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.161, -0.158, -0.079, -1.330, 1.450, 0.837 ], "step_params": [ -0.615, -1.006, 3.096, 0.253, 1.590, 59.603 ], "heli_params": [ -1.087, 0.630, 3.069, 1.600, -0.254, 59.623 ], "bp2_params": [ 6.723, -3.873, 0.020, 0.129, -0.501, -4.486 ], "groove_widths": [ 18.884, 13.271, 12.964, 11.791 ], "simple_Rise": 3.096, "simple_Twist": 17.112, "simple_hRise": 2.981, "simple_hTwist": 17.187 }, { "index": 19, "nt1": "///B/70", "nt2": "///B/102", "bp": "G-A", "name": "Sheared", "Saenger": "11-XI", "LW": "tSH", "DSSR": "tm-M", "bp1_params": [ 6.723, -3.873, 0.020, 0.129, -0.501, -4.486 ], "step_params": [ -3.709, -2.320, 4.290, 12.983, 10.097, -13.223 ], "heli_params": [ -1.958, 0.532, 6.083, -31.589, 40.618, -21.075 ], "bp2_params": [ -4.302, -3.273, -2.099, -26.817, -14.258, -75.347 ], "groove_widths": [ 16.451, 15.282, 11.667, 11.231 ], "simple_Rise": 4.290, "simple_Twist": 57.465, "simple_hRise": 3.053, "simple_hTwist": 59.579 }, { "index": 20, "nt1": "///B/71", "nt2": "///B/101", "bp": "A-U", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tHW", "DSSR": "tM-W", "bp1_params": [ -4.302, -3.273, -2.099, -26.817, -14.258, -75.347 ], "step_params": [ 0.531, -2.091, 3.328, -5.653, 2.508, 47.938 ], "heli_params": [ -2.749, -1.085, 3.143, 3.072, 6.924, 48.311 ], "bp2_params": [ -3.574, 0.871, -0.549, -24.420, 14.201, -54.909 ], "groove_widths": [ 17.964, 17.061, 11.327, 11.236 ], "simple_Rise": 3.328, "simple_Twist": 37.758, "simple_hRise": 3.080, "simple_hTwist": 38.242 }, { "index": 21, "nt1": "///B/72", "nt2": "///B/100", "bp": "U-G", "name": "--", "Saenger": "--", "LW": "c.W", "DSSR": "c.-W", "bp1_params": [ -3.574, 0.871, -0.549, -24.420, 14.201, -54.909 ], "step_params": [ -0.447, -2.047, 2.954, -1.784, 2.690, 45.293 ], "heli_params": [ -2.864, 0.439, 2.849, 3.488, 2.313, 45.402 ], "bp2_params": [ 0.947, 2.597, 0.566, -6.341, 27.368, -68.773 ], "groove_widths": [ 19.457, 19.009, 9.024, 9.021 ], "simple_Rise": 2.954, "simple_Twist": 24.922, "simple_hRise": 2.746, "simple_hTwist": 25.127 }, { "index": 22, "nt1": "///B/73", "nt2": "///B/99", "bp": "G-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.947, 2.597, 0.566, -6.341, 27.368, -68.773 ], "step_params": [ 0.177, -2.154, 3.063, 1.099, 0.534, 43.475 ], "heli_params": [ -2.955, -0.139, 3.041, 0.720, -1.483, 43.491 ], "bp2_params": [ 4.502, 0.692, 0.325, 8.820, 17.313, -67.963 ], "groove_widths": [ 19.656, 19.177, 8.687, 8.672 ], "simple_Rise": 3.063, "simple_Twist": 26.896, "simple_hRise": 3.025, "simple_hTwist": 26.923 }, { "index": 23, "nt1": "///B/74", "nt2": "///B/98", "bp": "G-G", "name": "--", "Saenger": "--", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 4.502, 0.692, 0.325, 8.820, 17.313, -67.963 ], "step_params": [ -0.468, -2.534, 3.541, 3.249, 4.344, 52.613 ], "heli_params": [ -3.140, 0.745, 3.305, 4.887, -3.655, 52.872 ], "bp2_params": [ 4.639, -3.313, 0.127, 5.467, -1.003, -89.792 ], "groove_widths": [ 18.281, 17.300, 10.913, 10.817 ], "simple_Rise": 3.541, "simple_Twist": 41.904, "simple_hRise": 3.231, "simple_hTwist": 42.238 }, { "index": 24, "nt1": "///B/75", "nt2": "///B/97", "bp": "U-A", "name": "rHoogsteen", "Saenger": "24-XXIV", "LW": "tWH", "DSSR": "tW-M", "bp1_params": [ 4.639, -3.313, 0.127, 5.467, -1.003, -89.792 ], "step_params": [ 4.221, -1.746, 3.237, -1.967, -1.171, -15.560 ], "heli_params": [ 7.309, 13.866, 3.598, 4.294, -7.215, -15.727 ], "bp2_params": [ -6.669, -3.647, 0.317, -0.895, -0.087, -4.922 ], "groove_widths": [ 16.999, 15.705, 12.548, 12.546 ], "simple_Rise": 3.237, "simple_Twist": 57.691, "simple_hRise": 3.135, "simple_hTwist": 57.733 }, { "index": 25, "nt1": "///B/76", "nt2": "///B/96", "bp": "A-G", "name": "Sheared", "Saenger": "11-XI", "LW": "tHS", "DSSR": "tM-m", "bp1_params": [ -6.669, -3.647, 0.317, -0.895, -0.087, -4.922 ], "step_params": [ -0.576, -1.111, 3.333, -3.853, 1.933, 61.924 ], "heli_params": [ -1.168, 0.378, 3.327, 1.876, 3.740, 62.059 ], "bp2_params": [ -0.462, -0.725, 0.608, -1.722, 0.908, -15.481 ], "groove_widths": [ 16.776, 15.366, 15.098, 14.585 ], "simple_Rise": 3.333, "simple_Twist": 22.167, "simple_hRise": 3.276, "simple_hTwist": 22.577 }, { "index": 26, "nt1": "///B/77", "nt2": "///B/95", "bp": "G-U", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.462, -0.725, 0.608, -1.722, 0.908, -15.481 ], "step_params": [ -0.498, -2.260, 3.225, -3.685, 1.735, 39.666 ], "heli_params": [ -3.511, 0.313, 3.159, 2.548, 5.414, 39.866 ], "bp2_params": [ 2.892, -0.983, 1.027, -0.083, -2.329, -3.380 ], "groove_widths": [ 16.820, 15.266, 14.570, 12.638 ], "simple_Rise": 3.225, "simple_Twist": 20.729, "simple_hRise": 3.068, "simple_hTwist": 21.121 }, { "index": 27, "nt1": "///B/78", "nt2": "///B/94", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.892, -0.983, 1.027, -0.083, -2.329, -3.380 ], "step_params": [ -3.203, -2.306, 3.001, 3.529, -4.193, 18.790 ], "heli_params": [ -4.935, 10.980, 2.800, -12.503, -10.522, 19.566 ], "bp2_params": [ -0.154, -0.680, -0.599, 6.938, -12.611, -31.186 ], "groove_widths": [ 17.131, 15.790, 14.958, 12.656 ], "simple_Rise": 3.001, "simple_Twist": 35.933, "simple_hRise": 2.925, "simple_hTwist": 36.335 }, { "index": 28, "nt1": "///B/79", "nt2": "///B/93", "bp": "C-U", "name": "--", "Saenger": "18-XVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.154, -0.680, -0.599, 6.938, -12.611, -31.186 ], "step_params": [ 2.234, -1.715, 3.599, -2.372, 11.700, 34.549 ], "heli_params": [ -4.353, -3.894, 2.739, 19.010, 3.853, 36.494 ], "bp2_params": [ -0.232, -0.195, -0.033, -0.711, 8.983, 1.750 ], "groove_widths": [ 17.529, 16.167, 14.183, 11.542 ], "simple_Rise": 3.599, "simple_Twist": 34.975, "simple_hRise": 2.751, "simple_hTwist": 36.896 }, { "index": 29, "nt1": "///B/80", "nt2": "///B/92", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.232, -0.195, -0.033, -0.711, 8.983, 1.750 ], "step_params": [ 0.567, -2.004, 3.323, 6.800, 8.892, 30.665 ], "heli_params": [ -5.044, 0.117, 2.713, 16.154, -12.353, 32.598 ], "bp2_params": [ -0.208, -0.275, -0.858, -3.792, 0.029, 0.043 ], "groove_widths": [ 17.162, 15.585, 14.901, 12.208 ], "simple_Rise": 3.323, "simple_Twist": 30.288, "simple_hRise": 2.703, "simple_hTwist": 32.245 }, { "index": 30, "nt1": "///B/81", "nt2": "///B/91", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.208, -0.275, -0.858, -3.792, 0.029, 0.043 ], "step_params": [ 0.147, -2.006, 3.283, -0.437, 3.924, 32.847 ], "heli_params": [ -4.165, -0.329, 3.027, 6.909, 0.769, 33.077 ], "bp2_params": [ -0.161, -0.202, -0.433, -4.391, 5.698, -0.709 ], "groove_widths": [ 16.585, null, 17.851, null ], "simple_Rise": 3.283, "simple_Twist": 33.048, "simple_hRise": 3.029, "simple_hTwist": 33.276 }, { "index": 31, "nt1": "///B/82", "nt2": "///B/90", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.161, -0.202, -0.433, -4.391, 5.698, -0.709 ], "step_params": [ 0.639, -1.888, 3.151, 0.094, 0.665, 29.962 ], "heli_params": [ -3.782, -1.218, 3.111, 1.286, -0.182, 29.969 ], "bp2_params": [ -0.232, -0.204, -0.451, 0.277, 5.965, -0.861 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.151, "simple_Twist": 29.817, "simple_hRise": 3.111, "simple_hTwist": 29.824 }, { "index": 32, "nt1": "///B/83", "nt2": "///B/89", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.232, -0.204, -0.451, 0.277, 5.965, -0.861 ], "step_params": [ 0.300, -1.700, 3.017, -0.500, 1.699, 25.949 ], "heli_params": [ -4.199, -0.791, 2.895, 3.778, 1.111, 26.008 ], "bp2_params": [ -0.145, -0.249, -0.668, 7.558, 6.982, -0.401 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.017, "simple_Twist": 25.562, "simple_hRise": 2.893, "simple_hTwist": 25.622 }, { "index": 33, "nt1": "///B/84", "nt2": "///B/88", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 88, "num_stems": 0, "strand1": "AU", "strand2": "AC", "bp_type": "..", "helix_form": "x", "helical_rise": 0.141, "helical_rise_std": 0.184, "helical_axis": [ -0.267, 0.606, 0.749 ], "point1": [ null, null, null ], "point2": [ null, null, null ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///B/37", "nt2": "///B/39", "bp": "A-A", "name": "--", "Saenger": "--", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.589, 1.264, -0.869, -57.074, 0.116, -21.829 ], "step_params": [ 8.110, -1.310, 6.002, -20.886, -42.495, 131.251 ], "heli_params": [ -0.206, -4.627, 5.475, -23.068, 11.338, 135.585 ], "bp2_params": [ -7.040, -4.137, 0.109, -40.322, -12.487, -27.888 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 6.002, "simple_Twist": 168.536, "simple_hRise": 5.901, "simple_hTwist": 169.504 }, { "index": 2, "nt1": "///B/38", "nt2": "///B/45", "bp": "U-C", "name": "--", "Saenger": "--", "LW": "tHW", "DSSR": "tM-W" } ] } ], "num_stems": 165, "stems": [ { "index": 1, "helix_index": 1, "strand1": "UUAAGU", "strand2": "AAUUCA", "bp_type": "||||||", "helix_form": ".AAAA", "helical_rise": 3.053, "helical_rise_std": 0.137, "helical_radius": 8.920, "helical_radius_std": 0.428, "helical_axis": [ 0.481, 0.863, -0.152 ], "point1": [ 136.298, 101.279, 202.387 ], "point2": [ 143.589, 114.366, 200.081 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/3", "nt2": "///A/2924", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.065, -0.275, -0.985, -6.624, -9.239, 4.109 ], "step_params": [ -1.020, -0.721, 3.746, -5.634, -1.905, 38.329 ], "heli_params": [ -0.813, 0.728, 3.881, -2.881, 8.519, 38.771 ], "bp2_params": [ -0.116, -0.192, -0.559, -7.555, -6.263, 0.706 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.746, "simple_Twist": 38.408, "simple_hRise": 3.881, "simple_hTwist": 38.849 }, { "index": 2, "nt1": "///A/4", "nt2": "///A/2923", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.116, -0.192, -0.559, -7.555, -6.263, 0.706 ], "step_params": [ 0.202, -1.502, 3.356, -4.141, 4.262, 31.801 ], "heli_params": [ -3.446, -1.089, 3.084, 7.694, 7.475, 32.337 ], "bp2_params": [ -0.029, -0.121, 0.065, -8.995, 2.910, 3.224 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.356, "simple_Twist": 31.915, "simple_hRise": 3.085, "simple_hTwist": 32.449 }, { "index": 3, "nt1": "///A/5", "nt2": "///A/2922", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.029, -0.121, 0.065, -8.995, 2.910, 3.224 ], "step_params": [ -0.101, -1.326, 3.097, -2.442, 4.796, 32.523 ], "heli_params": [ -3.088, -0.204, 2.878, 8.490, 4.323, 32.954 ], "bp2_params": [ 0.138, -0.118, 0.460, -4.301, 3.587, -0.693 ], "groove_widths": [ 17.418, null, 15.140, null ], "simple_Rise": 3.097, "simple_Twist": 31.841, "simple_hRise": 2.872, "simple_hTwist": 32.281 }, { "index": 4, "nt1": "///A/6", "nt2": "///A/2921", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.138, -0.118, 0.460, -4.301, 3.587, -0.693 ], "step_params": [ 0.828, -1.898, 2.994, 0.575, 2.983, 28.036 ], "heli_params": [ -4.514, -1.580, 2.797, 6.135, -1.182, 28.197 ], "bp2_params": [ -0.167, -0.185, 0.580, 1.146, 3.457, 1.176 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.994, "simple_Twist": 29.638, "simple_hRise": 2.809, "simple_hTwist": 29.790 }, { "index": 5, "nt1": "///A/7", "nt2": "///A/2920", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.167, -0.185, 0.580, 1.146, 3.457, 1.176 ], "step_params": [ -0.135, -1.859, 3.258, 0.010, 0.271, 36.131 ], "heli_params": [ -3.035, 0.219, 3.244, 0.437, -0.016, 36.132 ], "bp2_params": [ -0.101, -0.177, 0.698, -0.454, 1.571, -5.410 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.258, "simple_Twist": 35.572, "simple_hRise": 3.244, "simple_hTwist": 35.573 }, { "index": 6, "nt1": "///A/8", "nt2": "///A/2919", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 2, "helix_index": 2, "strand1": "GGGCGCACGG", "strand2": "UCCGUGUGCC", "bp_type": "||||||||||", "helix_form": ".AA..AA.A", "helical_rise": 2.739, "helical_rise_std": 0.272, "helical_radius": 9.316, "helical_radius_std": 1.245, "helical_axis": [ -0.164, 0.980, -0.114 ], "point1": [ 141.674, 139.748, 201.909 ], "point2": [ 137.646, 163.806, 199.098 ], "num_pairs": 10, "pairs": [ { "index": 1, "nt1": "///A/15", "nt2": "///A/571", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.048, -0.467, -0.800, -11.402, 1.729, -11.173 ], "step_params": [ 0.392, -1.967, 3.500, -3.011, 2.529, 31.251 ], "heli_params": [ -4.115, -1.307, 3.284, 4.671, 5.562, 31.491 ], "bp2_params": [ -0.088, -0.243, -0.885, -7.930, 5.155, -3.104 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.500, "simple_Twist": 26.256, "simple_hRise": 3.235, "simple_hTwist": 26.544 }, { "index": 2, "nt1": "///A/16", "nt2": "///A/570", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.088, -0.243, -0.885, -7.930, 5.155, -3.104 ], "step_params": [ -0.395, -1.847, 3.628, -2.611, 1.242, 31.821 ], "heli_params": [ -3.605, 0.196, 3.575, 2.260, 4.751, 31.949 ], "bp2_params": [ -0.173, -0.193, -0.513, -4.645, 7.124, -1.509 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.628, "simple_Twist": 32.096, "simple_hRise": 3.576, "simple_hTwist": 32.222 }, { "index": 3, "nt1": "///A/17", "nt2": "///A/569", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.173, -0.193, -0.513, -4.645, 7.124, -1.509 ], "step_params": [ 0.554, -1.528, 3.221, -0.790, 5.191, 31.399 ], "heli_params": [ -3.683, -1.146, 2.923, 9.509, 1.447, 31.824 ], "bp2_params": [ 0.252, -0.166, -0.061, 3.967, 8.753, -0.857 ], "groove_widths": [ 18.164, null, 13.264, null ], "simple_Rise": 3.221, "simple_Twist": 29.444, "simple_hRise": 2.900, "simple_hTwist": 29.898 }, { "index": 4, "nt1": "///A/18", "nt2": "///A/568", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.252, -0.166, -0.061, 3.967, 8.753, -0.857 ], "step_params": [ 1.660, -1.044, 2.871, 5.072, 32.228, 35.671 ], "heli_params": [ -3.346, -1.717, 1.655, 43.165, -6.794, 47.979 ], "bp2_params": [ -2.396, -0.364, -0.377, -10.619, -11.662, 2.005 ], "groove_widths": [ 18.072, 16.199, 13.696, 10.004 ], "simple_Rise": 2.871, "simple_Twist": 49.553, "simple_hRise": 2.051, "simple_hTwist": 58.757 }, { "index": 5, "nt1": "///A/19", "nt2": "///A/567", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.396, -0.364, -0.377, -10.619, -11.662, 2.005 ], "step_params": [ -0.899, -0.993, 3.521, -4.412, 0.676, 38.018 ], "heli_params": [ -1.607, 0.768, 3.582, 1.033, 6.744, 38.269 ], "bp2_params": [ 0.165, -0.282, -0.796, -4.448, -3.344, -0.647 ], "groove_widths": [ 17.321, 15.384, 15.044, 12.442 ], "simple_Rise": 3.521, "simple_Twist": 24.046, "simple_hRise": 3.597, "simple_hTwist": 24.451 }, { "index": 6, "nt1": "///A/20", "nt2": "///A/566", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.165, -0.282, -0.796, -4.448, -3.344, -0.647 ], "step_params": [ 0.114, -1.602, 3.456, -2.839, 3.904, 29.529 ], "heli_params": [ -3.932, -0.823, 3.198, 7.596, 5.524, 29.912 ], "bp2_params": [ 0.068, -0.132, -0.225, -4.540, 2.434, 0.970 ], "groove_widths": [ 17.220, 15.804, 17.517, 15.602 ], "simple_Rise": 3.456, "simple_Twist": 30.371, "simple_hRise": 3.206, "simple_hTwist": 30.743 }, { "index": 7, "nt1": "///A/21", "nt2": "///A/565", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.068, -0.132, -0.225, -4.540, 2.434, 0.970 ], "step_params": [ 0.830, -1.396, 3.233, -0.701, 3.199, 34.956 ], "heli_params": [ -2.778, -1.478, 3.080, 5.311, 1.164, 35.104 ], "bp2_params": [ 0.182, -0.106, 0.455, 1.176, 2.552, 0.533 ], "groove_widths": [ 17.720, null, 18.160, null ], "simple_Rise": 3.233, "simple_Twist": 34.249, "simple_hRise": 3.076, "simple_hTwist": 34.400 }, { "index": 8, "nt1": "///A/22", "nt2": "///A/564", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.182, -0.106, 0.455, 1.176, 2.552, 0.533 ], "step_params": [ -0.006, -2.699, 3.146, 4.326, 20.781, 20.280 ], "heli_params": [ -8.158, 0.598, 0.295, 45.804, -9.536, 29.277 ], "bp2_params": [ -0.209, -0.131, -0.139, -6.442, -5.402, 0.289 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.146, "simple_Twist": 22.274, "simple_hRise": 0.491, "simple_hTwist": 30.676 }, { "index": 9, "nt1": "///A/23", "nt2": "///A/563", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.209, -0.131, -0.139, -6.442, -5.402, 0.289 ], "step_params": [ -0.627, -1.745, 3.486, -3.857, 2.611, 33.041 ], "heli_params": [ -3.497, 0.416, 3.392, 4.563, 6.739, 33.359 ], "bp2_params": [ -0.182, -0.148, -0.586, -8.506, -0.178, 1.972 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.486, "simple_Twist": 32.912, "simple_hRise": 3.391, "simple_hTwist": 33.231 }, { "index": 10, "nt1": "///A/24", "nt2": "///A/562", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 3, "helix_index": 2, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": "A", "helical_rise": 2.600, "helical_rise_std": 0.030, "helical_radius": 9.651, "helical_radius_std": 1.169, "helical_axis": [ -0.052, 0.839, -0.542 ], "point1": [ 138.555, 185.587, 194.460 ], "point2": [ 138.419, 187.767, 193.050 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/31", "nt2": "///A/521", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.156, -0.115, -0.047, -5.176, 9.509, -1.892 ], "step_params": [ 0.645, -2.345, 3.109, -3.461, 7.674, 34.562 ], "heli_params": [ -4.812, -1.493, 2.474, 12.684, 5.721, 35.542 ], "bp2_params": [ 0.242, -0.178, 0.438, -0.605, 11.498, -0.305 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.109, "simple_Twist": 34.468, "simple_hRise": 2.472, "simple_hTwist": 35.451 }, { "index": 2, "nt1": "///A/32", "nt2": "///A/520", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 4, "helix_index": 2, "strand1": "GG", "strand2": "CC", "bp_type": "||", "helix_form": ".", "helical_rise": 1.414, "helical_rise_std": 0.016, "helical_radius": 11.124, "helical_radius_std": 2.345, "helical_axis": [ 0.511, 0.842, 0.176 ], "point1": [ 133.408, 203.215, 190.501 ], "point2": [ 134.130, 204.405, 190.750 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/35", "nt2": "///A/492", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.293, -0.227, 1.003, 13.868, 18.888, 3.479 ], "step_params": [ 0.889, -2.640, 3.503, 13.102, 23.370, 30.398 ], "heli_params": [ -6.143, 0.006, 1.454, 36.856, -20.663, 40.310 ], "bp2_params": [ -0.198, -0.119, -0.613, -5.117, -4.950, 0.891 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.503, "simple_Twist": 30.186, "simple_hRise": 1.440, "simple_hTwist": 40.153 }, { "index": 2, "nt1": "///A/36", "nt2": "///A/491", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 5, "helix_index": 2, "strand1": "CACUAGG", "strand2": "GUGAUCC", "bp_type": "|||||||", "helix_form": "A..AA.", "helical_rise": 2.707, "helical_rise_std": 0.411, "helical_radius": 9.764, "helical_radius_std": 0.724, "helical_axis": [ 0.522, 0.814, -0.253 ], "point1": [ 136.606, 207.386, 188.857 ], "point2": [ 145.082, 220.607, 184.751 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///A/37", "nt2": "///A/489", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.212, -0.122, -0.173, -2.318, -2.065, 0.364 ], "step_params": [ 0.217, -1.179, 3.014, -7.222, 11.664, 32.312 ], "heli_params": [ -3.462, -1.291, 2.361, 19.878, 12.308, 35.032 ], "bp2_params": [ 0.091, -0.295, 1.151, 2.651, -1.714, -0.357 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.014, "simple_Twist": 32.778, "simple_hRise": 2.372, "simple_hTwist": 35.460 }, { "index": 2, "nt1": "///A/38", "nt2": "///A/488", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.091, -0.295, 1.151, 2.651, -1.714, -0.357 ], "step_params": [ 0.773, -2.471, 3.202, 2.804, 0.771, 30.866 ], "heli_params": [ -4.769, -0.917, 3.197, 1.444, -5.254, 31.000 ], "bp2_params": [ 0.148, -0.298, 0.916, 2.427, -3.466, -2.767 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.202, "simple_Twist": 30.707, "simple_hRise": 3.197, "simple_hTwist": 30.842 }, { "index": 3, "nt1": "///A/39", "nt2": "///A/487", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.148, -0.298, 0.916, 2.427, -3.466, -2.767 ], "step_params": [ -1.083, -2.059, 3.288, -2.421, 1.028, 25.356 ], "heli_params": [ -4.962, 1.756, 3.290, 2.333, 5.497, 25.490 ], "bp2_params": [ -0.098, -0.171, 0.643, 0.884, -3.979, -0.114 ], "groove_widths": [ 16.662, null, 18.904, null ], "simple_Rise": 3.288, "simple_Twist": 26.422, "simple_hRise": 3.291, "simple_hTwist": 26.550 }, { "index": 4, "nt1": "///A/40", "nt2": "///A/486", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.098, -0.171, 0.643, 0.884, -3.979, -0.114 ], "step_params": [ -0.316, -1.839, 2.980, -0.687, 8.481, 34.593 ], "heli_params": [ -4.054, 0.432, 2.480, 14.002, 1.133, 35.593 ], "bp2_params": [ 0.064, -0.130, 0.584, 0.188, 4.377, -1.282 ], "groove_widths": [ 17.442, null, 17.944, null ], "simple_Rise": 2.980, "simple_Twist": 33.931, "simple_hRise": 2.469, "simple_hTwist": 34.951 }, { "index": 5, "nt1": "///A/41", "nt2": "///A/485", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.064, -0.130, 0.584, 0.188, 4.377, -1.282 ], "step_params": [ 0.706, -1.879, 3.112, -0.873, 4.825, 28.022 ], "heli_params": [ -4.822, -1.617, 2.734, 9.868, 1.785, 28.439 ], "bp2_params": [ -0.190, -0.294, 0.801, 3.456, 1.839, 1.003 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.112, "simple_Twist": 29.357, "simple_hRise": 2.753, "simple_hTwist": 29.755 }, { "index": 6, "nt1": "///A/42", "nt2": "///A/484", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.190, -0.294, 0.801, 3.456, 1.839, 1.003 ], "step_params": [ 0.621, -2.637, 2.957, 6.439, 3.499, 36.040 ], "heli_params": [ -4.604, -0.210, 2.765, 5.584, -10.276, 36.753 ], "bp2_params": [ -0.140, -0.156, 0.390, 1.923, -0.231, -1.181 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.957, "simple_Twist": 36.010, "simple_hRise": 2.764, "simple_hTwist": 36.724 }, { "index": 7, "nt1": "///A/43", "nt2": "///A/483", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 6, "helix_index": 2, "strand1": "AG", "strand2": "UC", "bp_type": "||", "helix_form": ".", "helical_rise": 0.631, "helical_rise_std": 0.068, "helical_axis": [ 0.209, 0.906, 0.368 ], "point1": [ null, null, null ], "point2": [ null, null, null ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/44", "nt2": "///A/481", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.021, -0.117, -0.134, -5.418, 15.582, 1.470 ], "step_params": [ 0.811, -1.759, 2.967, 1.593, 24.947, 23.559 ], "heli_params": [ -5.728, -1.204, 0.832, 47.261, -3.018, 34.221 ], "bp2_params": [ -0.221, -0.098, -0.209, 4.492, -9.316, 2.487 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.967, "simple_Twist": 24.813, "simple_hRise": 0.921, "simple_hTwist": 35.082 }, { "index": 2, "nt1": "///A/45", "nt2": "///A/480", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 7, "helix_index": 3, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.272, "helical_rise_std": 0.006, "helical_radius": 9.612, "helical_radius_std": 0.618, "helical_axis": [ -0.086, 0.778, 0.623 ], "point1": [ 163.469, 229.853, 192.820 ], "point2": [ 163.189, 232.397, 194.857 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/46", "nt2": "///A/181", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.186, -0.198, -0.588, -5.270, -1.247, 0.500 ], "step_params": [ -0.204, -1.566, 3.235, -4.874, 0.251, 28.321 ], "heli_params": [ -3.212, -0.676, 3.211, 0.508, 9.869, 28.730 ], "bp2_params": [ 0.192, -0.172, 0.001, 3.225, 3.790, 2.518 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.235, "simple_Twist": 28.161, "simple_hRise": 3.210, "simple_hTwist": 28.573 }, { "index": 2, "nt1": "///A/47", "nt2": "///A/180", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 8, "helix_index": 4, "strand1": "GGA", "strand2": "CCU", "bp_type": "|||", "helix_form": ".A", "helical_rise": 3.613, "helical_rise_std": 0.138, "helical_radius": 9.532, "helical_radius_std": 0.938, "helical_axis": [ -0.549, -0.543, 0.635 ], "point1": [ 160.426, 224.303, 211.655 ], "point2": [ 156.389, 220.310, 216.320 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/54", "nt2": "///A/115", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.215, -0.141, -0.649, -7.220, -4.094, 2.813 ], "step_params": [ 0.757, -2.295, 3.233, -1.230, 5.458, 21.893 ], "heli_params": [ -7.648, -2.335, 2.546, 14.078, 3.172, 22.588 ], "bp2_params": [ -0.194, -0.137, -0.027, -4.817, -0.604, 1.895 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.233, "simple_Twist": 21.818, "simple_hRise": 2.543, "simple_hTwist": 22.515 }, { "index": 2, "nt1": "///A/55", "nt2": "///A/114", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.194, -0.137, -0.027, -4.817, -0.604, 1.895 ], "step_params": [ 0.055, -1.523, 3.229, -0.570, 1.528, 41.227 ], "heli_params": [ -2.322, -0.138, 3.172, 2.168, 0.809, 41.258 ], "bp2_params": [ 0.099, -0.125, 0.152, -4.928, -1.500, -1.338 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.229, "simple_Twist": 39.988, "simple_hRise": 3.170, "simple_hTwist": 40.020 }, { "index": 3, "nt1": "///A/56", "nt2": "///A/113", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 9, "helix_index": 4, "strand1": "CGG", "strand2": "GCC", "bp_type": "|||", "helix_form": "A.", "helical_rise": 2.935, "helical_rise_std": 0.265, "helical_radius": 9.450, "helical_radius_std": 0.683, "helical_axis": [ -0.483, -0.732, 0.479 ], "point1": [ 154.119, 216.930, 214.948 ], "point2": [ 151.273, 212.619, 217.770 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/57", "nt2": "///A/70", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.184, -0.180, 0.101, -2.248, -1.394, -1.835 ], "step_params": [ 0.657, -1.782, 3.304, 3.017, 17.377, 29.106 ], "heli_params": [ -5.504, -0.700, 2.009, 31.224, -5.421, 33.933 ], "bp2_params": [ -0.188, -0.132, -0.509, -6.862, -5.028, 1.879 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.304, "simple_Twist": 31.164, "simple_hRise": 2.104, "simple_hTwist": 35.700 }, { "index": 2, "nt1": "///A/58", "nt2": "///A/69", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.188, -0.132, -0.509, -6.862, -5.028, 1.879 ], "step_params": [ -0.790, -1.319, 3.347, -2.782, 0.328, 36.463 ], "heli_params": [ -2.149, 0.864, 3.385, 0.524, 4.439, 36.567 ], "bp2_params": [ -0.187, -0.148, -0.446, -7.066, -3.584, 1.458 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.347, "simple_Twist": 36.657, "simple_hRise": 3.384, "simple_hTwist": 36.760 }, { "index": 3, "nt1": "///A/59", "nt2": "///A/68", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 10, "helix_index": 4, "strand1": "AC", "strand2": "UG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.838, "helical_rise_std": 0.033, "helical_radius": 9.110, "helical_radius_std": 0.329, "helical_axis": [ 0.028, 0.956, -0.293 ], "point1": [ 143.807, 206.035, 220.719 ], "point2": [ 143.915, 209.703, 219.593 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/65", "nt2": "///A/89", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.024, -0.138, -0.543, -13.785, -21.508, 0.274 ], "step_params": [ -0.985, -1.468, 3.556, -10.876, -5.553, 32.580 ], "heli_params": [ -1.462, -0.304, 3.870, -9.492, 18.592, 34.735 ], "bp2_params": [ 0.189, -0.152, -0.237, -15.552, -9.468, 2.204 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.556, "simple_Twist": 31.743, "simple_hRise": 3.872, "simple_hTwist": 33.954 }, { "index": 2, "nt1": "///A/66", "nt2": "///A/88", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 11, "helix_index": 5, "strand1": "CUUCGG", "strand2": "GAGGCC", "bp_type": "||||||", "helix_form": ".AA.A", "helical_rise": 2.463, "helical_rise_std": 0.148, "helical_radius": 9.236, "helical_radius_std": 0.492, "helical_axis": [ -0.969, 0.048, 0.241 ], "point1": [ 140.489, 228.270, 212.650 ], "point2": [ 128.718, 228.850, 215.576 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/76", "nt2": "///A/109", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.180, -0.253, -0.685, 4.074, -1.266, 0.227 ], "step_params": [ -1.181, -2.369, 3.829, -8.740, 1.658, 27.389 ], "heli_params": [ -5.215, 0.013, 3.866, 3.390, 17.869, 28.771 ], "bp2_params": [ -0.013, -0.113, -0.314, -3.463, 0.830, -0.894 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.829, "simple_Twist": 28.514, "simple_hRise": 3.872, "simple_hTwist": 29.842 }, { "index": 2, "nt1": "///A/77", "nt2": "///A/108", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.013, -0.113, -0.314, -3.463, 0.830, -0.894 ], "step_params": [ -0.334, -1.776, 3.375, -2.514, -0.322, 35.796 ], "heli_params": [ -2.834, 0.168, 3.405, -0.523, 4.084, 35.883 ], "bp2_params": [ 1.490, -0.494, -0.320, 0.490, 6.282, -4.105 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.375, "simple_Twist": 27.477, "simple_hRise": 3.411, "simple_hTwist": 27.591 }, { "index": 3, "nt1": "///A/78", "nt2": "///A/107", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.490, -0.494, -0.320, 0.490, 6.282, -4.105 ], "step_params": [ 0.516, -1.805, 2.901, 4.232, 12.792, 30.045 ], "heli_params": [ -4.923, -0.338, 2.036, 23.260, -7.696, 32.864 ], "bp2_params": [ 0.188, -0.157, -0.137, -1.429, -7.912, 3.431 ], "groove_widths": [ 17.124, null, 16.071, null ], "simple_Rise": 2.901, "simple_Twist": 36.959, "simple_hRise": 2.223, "simple_hTwist": 39.258 }, { "index": 4, "nt1": "///A/79", "nt2": "///A/106", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.188, -0.157, -0.137, -1.429, -7.912, 3.431 ], "step_params": [ 0.201, -2.030, 3.190, -0.910, 13.155, 26.512 ], "heli_params": [ -6.309, -0.554, 1.974, 26.688, 1.847, 29.558 ], "bp2_params": [ -0.203, -0.145, -0.306, -3.694, 2.986, 2.263 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.190, "simple_Twist": 29.025, "simple_hRise": 2.089, "simple_hTwist": 31.822 }, { "index": 5, "nt1": "///A/80", "nt2": "///A/105", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.203, -0.145, -0.306, -3.694, 2.986, 2.263 ], "step_params": [ -0.067, -1.584, 3.292, 2.751, 10.635, 38.167 ], "heli_params": [ -3.507, 0.403, 2.760, 15.867, -4.105, 39.660 ], "bp2_params": [ -0.180, -0.257, -0.953, -2.851, -9.393, 3.685 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.292, "simple_Twist": 38.193, "simple_hRise": 2.760, "simple_hTwist": 39.685 }, { "index": 6, "nt1": "///A/81", "nt2": "///A/104", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 12, "helix_index": 6, "strand1": "GCU", "strand2": "CGA", "bp_type": "|||", "helix_form": "A.", "helical_rise": 3.854, "helical_rise_std": 0.406, "helical_radius": 10.422, "helical_radius_std": 0.703, "helical_axis": [ 0.760, -0.634, -0.142 ], "point1": [ 122.057, 212.960, 228.760 ], "point2": [ 127.938, 208.053, 227.661 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/85", "nt2": "///A/97", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.161, -0.201, -0.606, -5.377, 4.546, -0.018 ], "step_params": [ 0.973, -1.802, 2.941, 0.897, 2.834, 32.683 ], "heli_params": [ -3.618, -1.586, 2.804, 5.023, -1.590, 32.814 ], "bp2_params": [ 0.170, -0.155, -0.594, 4.368, 3.465, -0.638 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.941, "simple_Twist": 30.671, "simple_hRise": 2.794, "simple_hTwist": 30.811 }, { "index": 2, "nt1": "///A/86", "nt2": "///A/96", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.170, -0.155, -0.594, 4.368, 3.465, -0.638 ], "step_params": [ 0.152, -2.413, 3.995, -5.203, -6.896, 18.083 ], "heli_params": [ -2.610, -3.702, 4.396, -20.491, 15.461, 20.025 ], "bp2_params": [ -0.149, -0.170, 0.581, 11.358, 10.721, -2.295 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.995, "simple_Twist": 19.318, "simple_hRise": 4.396, "simple_hTwist": 21.144 }, { "index": 3, "nt1": "///A/87", "nt2": "///A/95", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 13, "helix_index": 7, "strand1": "GGG", "strand2": "CCC", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.589, "helical_rise_std": 0.057, "helical_radius": 9.266, "helical_radius_std": 1.465, "helical_axis": [ 0.263, -0.383, -0.886 ], "point1": [ 171.258, 229.025, 221.912 ], "point2": [ 172.607, 227.061, 217.366 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/120", "nt2": "///A/129", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.182, -0.298, 0.804, -0.351, -3.909, -3.158 ], "step_params": [ -0.011, -1.739, 3.283, 0.350, 4.129, 38.369 ], "heli_params": [ -3.129, 0.059, 3.086, 6.260, -0.531, 38.584 ], "bp2_params": [ -0.193, -0.163, 0.379, -4.169, 3.814, 1.120 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.283, "simple_Twist": 38.686, "simple_hRise": 3.088, "simple_hTwist": 38.899 }, { "index": 2, "nt1": "///A/121", "nt2": "///A/128", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.193, -0.163, 0.379, -4.169, 3.814, 1.120 ], "step_params": [ 0.161, -2.033, 3.249, 4.989, 10.110, 28.737 ], "heli_params": [ -5.590, 0.568, 2.407, 19.450, -9.598, 30.826 ], "bp2_params": [ -0.249, -0.132, -0.211, -9.312, -5.619, 1.536 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.249, "simple_Twist": 28.731, "simple_hRise": 2.407, "simple_hTwist": 30.821 }, { "index": 3, "nt1": "///A/122", "nt2": "///A/127", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 14, "helix_index": 7, "strand1": "ACCACUC", "strand2": "UGGUGAG", "bp_type": "|||||||", "helix_form": "AAAAAA", "helical_rise": 2.515, "helical_rise_std": 0.177, "helical_radius": 9.237, "helical_radius_std": 0.660, "helical_axis": [ -0.009, 0.435, 0.901 ], "point1": [ 170.666, 234.561, 223.021 ], "point2": [ 170.530, 241.058, 236.480 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///A/130", "nt2": "///A/149", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.002, -0.029, 0.307, 0.769, 3.103, -1.846 ], "step_params": [ 0.109, -1.740, 3.151, -2.815, 0.816, 34.898 ], "heli_params": [ -3.009, -0.585, 3.093, 1.358, 4.684, 35.017 ], "bp2_params": [ 0.195, -0.223, 0.661, 4.031, 1.695, 1.801 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.151, "simple_Twist": 34.015, "simple_hRise": 3.091, "simple_hTwist": 34.137 }, { "index": 2, "nt1": "///A/131", "nt2": "///A/148", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.195, -0.223, 0.661, 4.031, 1.695, 1.801 ], "step_params": [ -0.236, -1.639, 3.069, 6.059, 12.279, 37.535 ], "heli_params": [ -3.623, 0.947, 2.374, 18.352, -9.056, 39.870 ], "bp2_params": [ 0.175, -0.178, 0.102, -0.612, -4.295, -0.636 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.069, "simple_Twist": 37.732, "simple_hRise": 2.379, "simple_hTwist": 40.054 }, { "index": 3, "nt1": "///A/132", "nt2": "///A/147", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.175, -0.178, 0.102, -0.612, -4.295, -0.636 ], "step_params": [ -0.682, -1.776, 2.923, -3.173, 10.269, 27.143 ], "heli_params": [ -5.342, 0.794, 2.185, 20.871, 6.449, 29.156 ], "bp2_params": [ 0.055, -0.100, 0.273, 1.510, 7.959, -3.381 ], "groove_widths": [ 17.724, null, 14.513, null ], "simple_Rise": 2.923, "simple_Twist": 27.588, "simple_hRise": 2.198, "simple_hTwist": 29.570 }, { "index": 4, "nt1": "///A/133", "nt2": "///A/146", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.055, -0.100, 0.273, 1.510, 7.959, -3.381 ], "step_params": [ 0.548, -1.970, 3.100, 1.356, 4.384, 37.490 ], "heli_params": [ -3.563, -0.686, 2.877, 6.790, -2.099, 37.759 ], "bp2_params": [ 0.263, -0.187, 0.054, 6.664, 6.470, 0.678 ], "groove_widths": [ 17.308, null, 15.529, null ], "simple_Rise": 3.100, "simple_Twist": 36.742, "simple_hRise": 2.871, "simple_hTwist": 37.018 }, { "index": 5, "nt1": "///A/134", "nt2": "///A/145", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.263, -0.187, 0.054, 6.664, 6.470, 0.678 ], "step_params": [ 0.662, -2.030, 3.191, 5.576, 2.656, 31.651 ], "heli_params": [ -4.114, -0.231, 3.084, 4.812, -10.104, 32.233 ], "bp2_params": [ 0.023, -0.191, -0.649, 5.831, 4.247, 3.551 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.191, "simple_Twist": 32.789, "simple_hRise": 3.090, "simple_hTwist": 33.350 }, { "index": 6, "nt1": "///A/135", "nt2": "///A/144", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.023, -0.191, -0.649, 5.831, 4.247, 3.551 ], "step_params": [ -0.249, -2.534, 3.520, -4.615, 6.616, 32.267 ], "heli_params": [ -5.544, -0.342, 2.963, 11.678, 8.146, 33.234 ], "bp2_params": [ 0.272, -0.179, 0.213, -5.150, 14.748, 2.364 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.520, "simple_Twist": 30.973, "simple_hRise": 2.936, "simple_hTwist": 31.981 }, { "index": 7, "nt1": "///A/136", "nt2": "///A/143", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 15, "helix_index": 8, "strand1": "CAUAUC", "strand2": "GUAUAG", "bp_type": "||||||", "helix_form": ".AAAA", "helical_rise": 2.601, "helical_rise_std": 0.288, "helical_radius": 9.352, "helical_radius_std": 0.668, "helical_axis": [ 0.611, 0.730, -0.308 ], "point1": [ 175.252, 245.364, 206.830 ], "point2": [ 183.178, 254.833, 202.836 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/153", "nt2": "///A/175", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.170, -0.177, -0.139, -0.202, -1.404, -1.759 ], "step_params": [ -0.634, -2.031, 2.760, -11.239, 17.680, 31.043 ], "heli_params": [ -4.874, -0.088, 1.557, 29.234, 18.583, 37.306 ], "bp2_params": [ 0.041, -0.231, 0.763, 0.220, -3.767, -0.954 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.760, "simple_Twist": 31.721, "simple_hRise": 1.584, "simple_hTwist": 37.866 }, { "index": 2, "nt1": "///A/154", "nt2": "///A/174", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.041, -0.231, 0.763, 0.220, -3.767, -0.954 ], "step_params": [ 0.038, -1.871, 3.294, 0.983, 0.872, 31.958 ], "heli_params": [ -3.553, 0.108, 3.242, 1.584, -1.784, 31.984 ], "bp2_params": [ -0.074, -0.123, 0.382, -0.145, -0.611, -1.349 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.294, "simple_Twist": 32.534, "simple_hRise": 3.243, "simple_hTwist": 32.560 }, { "index": 3, "nt1": "///A/155", "nt2": "///A/173", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.074, -0.123, 0.382, -0.145, -0.611, -1.349 ], "step_params": [ 0.177, -1.809, 3.243, 0.887, 0.681, 29.579 ], "heli_params": [ -3.683, -0.162, 3.205, 1.332, -1.737, 29.599 ], "bp2_params": [ -0.001, -0.137, 0.167, -0.429, 4.715, 1.263 ], "groove_widths": [ 16.966, null, 17.202, null ], "simple_Rise": 3.243, "simple_Twist": 29.158, "simple_hRise": 3.204, "simple_hTwist": 29.179 }, { "index": 4, "nt1": "///A/156", "nt2": "///A/172", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.001, -0.137, 0.167, -0.429, 4.715, 1.263 ], "step_params": [ 0.421, -2.057, 3.150, -0.669, 2.391, 32.229 ], "heli_params": [ -4.092, -0.867, 2.985, 4.299, 1.202, 32.322 ], "bp2_params": [ 0.063, -0.190, 0.263, 3.237, 5.556, 7.696 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.150, "simple_Twist": 31.971, "simple_hRise": 2.983, "simple_hTwist": 32.064 }, { "index": 5, "nt1": "///A/157", "nt2": "///A/171", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.063, -0.190, 0.263, 3.237, 5.556, 7.696 ], "step_params": [ -0.048, -1.681, 3.007, 9.686, 9.378, 30.941 ], "heli_params": [ -4.196, 1.420, 2.299, 16.624, -17.171, 33.685 ], "bp2_params": [ 0.167, -0.177, -0.492, 3.124, -3.216, 0.147 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.007, "simple_Twist": 30.110, "simple_hRise": 2.275, "simple_hTwist": 32.927 }, { "index": 6, "nt1": "///A/158", "nt2": "///A/170", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 16, "helix_index": 9, "strand1": "CCGGG", "strand2": "GGCCC", "bp_type": "|||||", "helix_form": "AAAA", "helical_rise": 2.635, "helical_rise_std": 0.180, "helical_radius": 9.568, "helical_radius_std": 0.411, "helical_axis": [ 0.501, -0.297, -0.813 ], "point1": [ 166.510, 222.353, 184.820 ], "point2": [ 171.787, 219.224, 176.256 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/187", "nt2": "///A/215", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.189, -0.239, 0.635, -0.329, -3.482, -0.980 ], "step_params": [ -0.404, -1.999, 2.944, -0.571, 8.678, 31.884 ], "heli_params": [ -4.727, 0.632, 2.340, 15.442, 1.017, 33.019 ], "bp2_params": [ 0.161, -0.226, 0.601, 1.674, -6.523, -1.899 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.944, "simple_Twist": 31.687, "simple_hRise": 2.336, "simple_hTwist": 32.830 }, { "index": 2, "nt1": "///A/188", "nt2": "///A/214", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.161, -0.226, 0.601, 1.674, -6.523, -1.899 ], "step_params": [ 0.009, -2.059, 3.358, 2.593, 11.912, 28.521 ], "heli_params": [ -5.941, 0.436, 2.324, 22.902, -4.986, 30.968 ], "bp2_params": [ -0.195, -0.144, -0.528, -5.571, -6.899, 2.075 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.358, "simple_Twist": 30.880, "simple_hRise": 2.413, "simple_hTwist": 33.145 }, { "index": 3, "nt1": "///A/189", "nt2": "///A/213", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.195, -0.144, -0.528, -5.571, -6.899, 2.075 ], "step_params": [ -0.546, -1.718, 3.602, -1.873, 1.169, 34.226 ], "heli_params": [ -3.115, 0.603, 3.567, 1.983, 3.178, 34.295 ], "bp2_params": [ -0.179, -0.160, -0.656, -9.827, -1.489, 0.518 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.602, "simple_Twist": 33.928, "simple_hRise": 3.567, "simple_hTwist": 33.998 }, { "index": 4, "nt1": "///A/190", "nt2": "///A/212", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.179, -0.160, -0.656, -9.827, -1.489, 0.518 ], "step_params": [ 0.377, -1.819, 3.021, -1.943, 12.202, 29.196 ], "heli_params": [ -5.170, -0.983, 2.084, 22.953, 3.656, 31.650 ], "bp2_params": [ -0.175, -0.142, -0.113, -3.386, -0.459, 0.562 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.021, "simple_Twist": 29.233, "simple_hRise": 2.085, "simple_hTwist": 31.685 }, { "index": 5, "nt1": "///A/191", "nt2": "///A/211", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 17, "helix_index": 10, "strand1": "GC", "strand2": "CG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.707, "helical_rise_std": 0.022, "helical_radius": 10.909, "helical_radius_std": 2.021, "helical_axis": [ 0.279, -0.608, -0.744 ], "point1": [ 161.075, 244.909, 148.673 ], "point2": [ 162.108, 242.658, 145.919 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/227", "nt2": "///A/234", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.251, -0.178, 0.024, -10.877, -8.155, -0.644 ], "step_params": [ -0.306, -1.623, 3.538, -2.444, -2.011, 23.311 ], "heli_params": [ -3.232, -0.159, 3.675, -4.948, 6.013, 23.522 ], "bp2_params": [ 0.105, -0.205, -0.267, -8.751, -7.565, 3.559 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.538, "simple_Twist": 20.904, "simple_hRise": 3.687, "simple_hTwist": 21.139 }, { "index": 2, "nt1": "///A/228", "nt2": "///A/233", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 18, "helix_index": 11, "strand1": "UCCC", "strand2": "AGGG", "bp_type": "||||", "helix_form": "A.A", "helical_rise": 2.904, "helical_rise_std": 0.329, "helical_radius": 9.649, "helical_radius_std": 0.642, "helical_axis": [ 0.449, -0.840, -0.305 ], "point1": [ 150.129, 233.595, 158.811 ], "point2": [ 154.081, 226.204, 156.130 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/238", "nt2": "///A/265", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.125, -0.332, 1.194, 5.661, 2.408, 0.548 ], "step_params": [ 0.246, -1.827, 2.892, 5.582, 6.341, 36.822 ], "heli_params": [ -3.515, 0.228, 2.563, 9.880, -8.697, 37.746 ], "bp2_params": [ 0.143, -0.222, 0.580, 7.465, -0.787, -0.196 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.892, "simple_Twist": 35.134, "simple_hRise": 2.543, "simple_hTwist": 36.104 }, { "index": 2, "nt1": "///A/239", "nt2": "///A/264", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.143, -0.222, 0.580, 7.465, -0.787, -0.196 ], "step_params": [ -0.713, -2.736, 2.971, -5.748, 5.555, 29.283 ], "heli_params": [ -6.184, 0.375, 2.513, 10.739, 11.110, 30.331 ], "bp2_params": [ 0.172, -0.240, 0.665, 7.815, -0.969, 1.447 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.971, "simple_Twist": 29.188, "simple_hRise": 2.511, "simple_hTwist": 30.240 }, { "index": 3, "nt1": "///A/240", "nt2": "///A/263", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.172, -0.240, 0.665, 7.815, -0.969, 1.447 ], "step_params": [ -0.131, -2.105, 2.997, 2.392, 5.989, 33.899 ], "heli_params": [ -4.350, 0.541, 2.584, 10.158, -4.058, 34.490 ], "bp2_params": [ 0.170, -0.151, -0.148, 15.716, 13.199, 1.465 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.997, "simple_Twist": 33.769, "simple_hRise": 2.582, "simple_hTwist": 34.361 }, { "index": 4, "nt1": "///A/241", "nt2": "///A/262", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 19, "helix_index": 11, "strand1": "GC", "strand2": "CG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.334, "helical_rise_std": 0.007, "helical_radius": 9.284, "helical_radius_std": 0.598, "helical_axis": [ 0.800, -0.376, -0.467 ], "point1": [ 165.999, 210.880, 150.025 ], "point2": [ 168.666, 209.625, 148.467 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/248", "nt2": "///A/256", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.215, -0.171, 0.502, 1.989, 5.277, 2.891 ], "step_params": [ 0.062, -1.729, 3.292, 0.779, 0.860, 36.299 ], "heli_params": [ -2.894, 0.009, 3.252, 1.380, -1.250, 36.316 ], "bp2_params": [ 0.217, -0.198, 0.565, 5.370, 4.589, 3.164 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.292, "simple_Twist": 33.759, "simple_hRise": 3.249, "simple_hTwist": 33.779 }, { "index": 2, "nt1": "///A/249", "nt2": "///A/255", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 20, "helix_index": 12, "strand1": "GCC", "strand2": "CGG", "bp_type": "|||", "helix_form": ".A", "helical_rise": 4.035, "helical_rise_std": 0.135, "helical_radius": 10.042, "helical_radius_std": 0.926, "helical_axis": [ 0.496, 0.867, -0.041 ], "point1": [ 159.943, 245.244, 166.930 ], "point2": [ 164.007, 252.349, 166.597 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/269", "nt2": "///A/473", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.101, -0.430, -1.514, -14.086, -2.845, -0.214 ], "step_params": [ 1.196, -1.663, 3.081, -1.102, 2.074, 22.517 ], "heli_params": [ -4.923, -3.411, 2.857, 5.293, 2.813, 22.638 ], "bp2_params": [ 0.167, -0.279, -0.840, -3.157, 1.292, -1.101 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.081, "simple_Twist": 21.013, "simple_hRise": 2.839, "simple_hTwist": 21.142 }, { "index": 2, "nt1": "///A/270", "nt2": "///A/472", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.167, -0.279, -0.840, -3.157, 1.292, -1.101 ], "step_params": [ 0.317, -2.164, 3.506, -5.763, -2.124, 33.079 ], "heli_params": [ -3.363, -1.569, 3.530, -3.691, 10.015, 33.629 ], "bp2_params": [ 0.161, -0.183, 0.304, 0.415, 7.512, 0.671 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.506, "simple_Twist": 32.800, "simple_hRise": 3.530, "simple_hTwist": 33.354 }, { "index": 3, "nt1": "///A/271", "nt2": "///A/471", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 21, "helix_index": 12, "strand1": "CCAA", "strand2": "GGUU", "bp_type": "||||", "helix_form": "A.A", "helical_rise": 2.442, "helical_rise_std": 0.168, "helical_radius": 9.339, "helical_radius_std": 1.354, "helical_axis": [ 0.631, 0.728, 0.270 ], "point1": [ 169.948, 265.966, 174.671 ], "point2": [ 174.597, 271.330, 176.661 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/276", "nt2": "///A/295", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.232, -0.239, 0.770, 2.175, 2.260, 1.480 ], "step_params": [ 0.184, -2.025, 2.880, 7.977, 9.187, 29.869 ], "heli_params": [ -4.964, 0.807, 2.156, 16.965, -14.731, 32.200 ], "bp2_params": [ 0.154, -0.152, 0.187, 0.320, -8.505, 0.160 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.880, "simple_Twist": 29.735, "simple_hRise": 2.152, "simple_hTwist": 32.076 }, { "index": 2, "nt1": "///A/277", "nt2": "///A/294", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.154, -0.152, 0.187, 0.320, -8.505, 0.160 ], "step_params": [ -0.089, -1.655, 3.127, 6.835, 18.372, 36.369 ], "heli_params": [ -4.036, 0.752, 2.048, 27.149, -10.100, 41.157 ], "bp2_params": [ 0.076, -0.216, -0.768, -6.595, 5.282, -3.019 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.127, "simple_Twist": 36.839, "simple_hRise": 2.064, "simple_hTwist": 41.569 }, { "index": 3, "nt1": "///A/278", "nt2": "///A/293", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.076, -0.216, -0.768, -6.595, 5.282, -3.019 ], "step_params": [ -0.011, -1.454, 2.856, -2.318, 5.112, 28.032 ], "heli_params": [ -3.914, -0.418, 2.548, 10.421, 4.726, 28.578 ], "bp2_params": [ 0.084, -0.251, -0.599, 4.173, 10.845, -1.551 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.856, "simple_Twist": 28.108, "simple_hRise": 2.549, "simple_hTwist": 28.652 }, { "index": 4, "nt1": "///A/279", "nt2": "///A/292", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 22, "helix_index": 12, "strand1": "AGG", "strand2": "UCC", "bp_type": "|||", "helix_form": "..", "helical_rise": 3.350, "helical_rise_std": 0.085, "helical_radius": 9.127, "helical_radius_std": 0.795, "helical_axis": [ 0.978, 0.198, -0.067 ], "point1": [ 180.672, 274.056, 179.997 ], "point2": [ 187.344, 275.404, 179.540 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/281", "nt2": "///A/290", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.046, -0.329, -0.429, 0.471, 5.919, 7.064 ], "step_params": [ -0.551, -0.752, 3.067, 0.819, 2.520, 27.706 ], "heli_params": [ -2.122, 1.326, 2.970, 5.246, -1.705, 27.830 ], "bp2_params": [ -0.052, -0.294, -0.641, 3.534, 2.338, -4.391 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.067, "simple_Twist": 28.358, "simple_hRise": 2.973, "simple_hTwist": 28.479 }, { "index": 2, "nt1": "///A/282", "nt2": "///A/289", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.052, -0.294, -0.641, 3.534, 2.338, -4.391 ], "step_params": [ 1.722, -0.088, 3.182, -1.623, 3.575, 31.393 ], "heli_params": [ -0.795, -3.447, 3.063, 6.575, 2.984, 31.632 ], "bp2_params": [ -0.084, -0.423, -1.048, 9.833, -3.333, 1.103 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.182, "simple_Twist": 31.571, "simple_hRise": 3.064, "simple_hTwist": 31.808 }, { "index": 3, "nt1": "///A/283", "nt2": "///A/288", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 23, "helix_index": 16, "strand1": "AGGA", "strand2": "UCCU", "bp_type": "||||", "helix_form": "..A", "helical_rise": 3.485, "helical_rise_std": 0.416, "helical_radius": 9.147, "helical_radius_std": 0.980, "helical_axis": [ -0.363, 0.908, 0.210 ], "point1": [ 171.000, 260.194, 153.855 ], "point2": [ 167.170, 269.786, 156.070 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/302", "nt2": "///A/416", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.535, -0.638, -1.865, -10.006, 1.565, -3.208 ], "step_params": [ -0.219, -0.563, 3.623, -7.440, 3.842, 24.257 ], "heli_params": [ -2.469, -1.833, 3.409, 8.813, 17.067, 25.641 ], "bp2_params": [ -0.132, -0.223, -0.634, -3.577, 4.975, -2.597 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.623, "simple_Twist": 27.497, "simple_hRise": 3.453, "simple_hTwist": 28.720 }, { "index": 2, "nt1": "///A/303", "nt2": "///A/415", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.132, -0.223, -0.634, -3.577, 4.975, -2.597 ], "step_params": [ 1.132, -1.616, 3.221, -2.049, 8.856, 32.193 ], "heli_params": [ -4.144, -2.277, 2.621, 15.586, 3.606, 33.419 ], "bp2_params": [ -0.191, -0.281, -0.832, -2.075, -4.364, -0.437 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.221, "simple_Twist": 32.320, "simple_hRise": 2.624, "simple_hTwist": 33.541 }, { "index": 3, "nt1": "///A/304", "nt2": "///A/414", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.191, -0.281, -0.832, -2.075, -4.364, -0.437 ], "step_params": [ 0.026, -1.564, 3.709, -6.257, 3.558, 37.575 ], "heli_params": [ -2.886, -0.915, 3.503, 5.463, 9.606, 38.234 ], "bp2_params": [ 0.132, -0.061, -0.399, -21.386, -6.049, 0.126 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.709, "simple_Twist": 35.810, "simple_hRise": 3.489, "simple_hTwist": 36.503 }, { "index": 4, "nt1": "///A/305", "nt2": "///A/413", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 24, "helix_index": 16, "strand1": "CACUC", "strand2": "GUGAG", "bp_type": "|||||", "helix_form": "AAAA", "helical_rise": 2.636, "helical_rise_std": 0.333, "helical_radius": 9.579, "helical_radius_std": 0.882, "helical_axis": [ -0.479, 0.622, 0.620 ], "point1": [ 160.844, 268.181, 157.827 ], "point2": [ 155.821, 274.711, 164.330 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/306", "nt2": "///A/410", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.223, -0.261, 0.455, 4.153, -13.530, -4.186 ], "step_params": [ -0.717, -1.875, 3.531, -1.633, 4.736, 23.492 ], "heli_params": [ -6.082, 1.180, 3.139, 11.464, 3.954, 24.013 ], "bp2_params": [ 0.023, -0.337, -0.964, -2.148, -1.679, 2.251 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.531, "simple_Twist": 24.081, "simple_hRise": 3.150, "simple_hTwist": 24.589 }, { "index": 2, "nt1": "///A/307", "nt2": "///A/409", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.023, -0.337, -0.964, -2.148, -1.679, 2.251 ], "step_params": [ 0.169, -1.845, 3.001, -1.900, 1.507, 34.093 ], "heli_params": [ -3.355, -0.559, 2.906, 2.566, 3.236, 34.177 ], "bp2_params": [ 0.189, -0.228, -0.785, 3.489, 1.972, 0.001 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.001, "simple_Twist": 33.390, "simple_hRise": 2.904, "simple_hTwist": 33.476 }, { "index": 3, "nt1": "///A/308", "nt2": "///A/408", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.189, -0.228, -0.785, 3.489, 1.972, 0.001 ], "step_params": [ -0.041, -2.238, 3.463, -0.284, 4.786, 27.383 ], "heli_params": [ -5.810, 0.017, 3.035, 10.013, 0.594, 27.791 ], "bp2_params": [ 0.025, -0.270, -0.495, -0.040, -1.173, 1.219 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.463, "simple_Twist": 27.975, "simple_hRise": 3.045, "simple_hTwist": 28.375 }, { "index": 4, "nt1": "///A/309", "nt2": "///A/407", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.025, -0.270, -0.495, -0.040, -1.173, 1.219 ], "step_params": [ 0.187, -1.688, 2.841, -0.520, 12.697, 31.448 ], "heli_params": [ -4.480, -0.386, 2.024, 22.318, 0.914, 33.858 ], "bp2_params": [ 0.172, -0.188, -0.232, 6.906, 0.436, 0.704 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.841, "simple_Twist": 30.403, "simple_hRise": 1.992, "simple_hTwist": 32.894 }, { "index": 5, "nt1": "///A/310", "nt2": "///A/406", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 25, "helix_index": 13, "strand1": "GGAG", "strand2": "CCUC", "bp_type": "||||", "helix_form": "AAA", "helical_rise": 3.069, "helical_rise_std": 0.198, "helical_radius": 8.914, "helical_radius_std": 0.252, "helical_axis": [ -0.327, -0.920, 0.217 ], "point1": [ 142.262, 266.832, 179.389 ], "point2": [ 139.234, 258.302, 181.406 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/316", "nt2": "///A/404", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.143, -0.361, -1.148, -13.868, -1.889, -0.725 ], "step_params": [ 0.172, -1.278, 3.093, -2.968, 2.199, 28.678 ], "heli_params": [ -3.013, -0.955, 2.956, 4.416, 5.961, 28.910 ], "bp2_params": [ -0.111, -0.183, -0.685, -9.164, 4.334, -0.026 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.093, "simple_Twist": 28.717, "simple_hRise": 2.956, "simple_hTwist": 28.949 }, { "index": 2, "nt1": "///A/317", "nt2": "///A/403", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.111, -0.183, -0.685, -9.164, 4.334, -0.026 ], "step_params": [ 0.203, -1.320, 2.975, -2.988, 5.781, 33.586 ], "heli_params": [ -3.043, -0.757, 2.690, 9.889, 5.111, 34.193 ], "bp2_params": [ 0.063, -0.167, -0.345, -0.156, 6.229, 2.421 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.975, "simple_Twist": 32.385, "simple_hRise": 2.677, "simple_hTwist": 33.015 }, { "index": 3, "nt1": "///A/318", "nt2": "///A/402", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.063, -0.167, -0.345, -0.156, 6.229, 2.421 ], "step_params": [ 0.082, -1.359, 2.925, 1.312, 4.899, 31.615 ], "heli_params": [ -3.229, 0.055, 2.690, 8.920, -2.389, 32.009 ], "bp2_params": [ -0.144, -0.187, -0.351, 10.652, 3.265, -1.479 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.925, "simple_Twist": 32.935, "simple_hRise": 2.701, "simple_hTwist": 33.312 }, { "index": 4, "nt1": "///A/319", "nt2": "///A/401", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 26, "helix_index": 13, "strand1": "GGAACGA", "strand2": "UCUUGCU", "bp_type": "|||||||", "helix_form": ".AA..A", "helical_rise": 3.057, "helical_rise_std": 0.252, "helical_radius": 9.587, "helical_radius_std": 1.129, "helical_axis": [ -0.438, -0.787, 0.434 ], "point1": [ 139.975, 254.976, 185.302 ], "point2": [ 131.936, 240.519, 193.272 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///A/327", "nt2": "///A/400", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.535, -0.534, 0.261, -3.892, -5.133, 13.807 ], "step_params": [ -0.776, -1.405, 3.163, 3.387, 0.289, 33.109 ], "heli_params": [ -2.499, 1.893, 3.059, 0.506, -5.924, 33.279 ], "bp2_params": [ -0.205, -0.168, -0.104, -3.033, -1.762, -0.037 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.163, "simple_Twist": 25.022, "simple_hRise": 3.017, "simple_hTwist": 25.248 }, { "index": 2, "nt1": "///A/328", "nt2": "///A/399", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.205, -0.168, -0.104, -3.033, -1.762, -0.037 ], "step_params": [ -0.097, -1.845, 3.218, 0.702, -0.499, 32.824 ], "heli_params": [ -3.179, 0.291, 3.242, -0.882, -1.242, 32.835 ], "bp2_params": [ -0.013, -0.169, -0.263, -4.224, 0.039, 1.620 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.218, "simple_Twist": 31.655, "simple_hRise": 3.243, "simple_hTwist": 31.667 }, { "index": 3, "nt1": "///A/329", "nt2": "///A/398", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.013, -0.169, -0.263, -4.224, 0.039, 1.620 ], "step_params": [ -0.350, -1.641, 3.389, -0.096, 1.252, 31.620 ], "heli_params": [ -3.247, 0.624, 3.324, 2.297, 0.176, 31.644 ], "bp2_params": [ -0.043, -0.149, 0.319, -1.258, 0.587, -1.550 ], "groove_widths": [ 16.333, null, 18.322, null ], "simple_Rise": 3.389, "simple_Twist": 31.542, "simple_hRise": 3.324, "simple_hTwist": 31.567 }, { "index": 4, "nt1": "///A/330", "nt2": "///A/397", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.043, -0.149, 0.319, -1.258, 0.587, -1.550 ], "step_params": [ 0.425, -2.040, 3.131, 0.929, 1.881, 36.538 ], "heli_params": [ -3.492, -0.557, 3.035, 2.997, -1.480, 36.596 ], "bp2_params": [ 0.131, -0.215, 0.378, 1.814, 0.306, 0.638 ], "groove_widths": [ 17.256, null, 16.961, null ], "simple_Rise": 3.131, "simple_Twist": 35.702, "simple_hRise": 3.033, "simple_hTwist": 35.761 }, { "index": 5, "nt1": "///A/331", "nt2": "///A/396", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.131, -0.215, 0.378, 1.814, 0.306, 0.638 ], "step_params": [ -0.317, -1.673, 3.050, 4.553, 22.728, 33.301 ], "heli_params": [ -4.428, 0.861, 1.582, 34.900, -6.992, 40.386 ], "bp2_params": [ -0.177, -0.154, -0.393, -7.198, -6.268, 0.770 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.050, "simple_Twist": 35.497, "simple_hRise": 1.678, "simple_hTwist": 42.190 }, { "index": 6, "nt1": "///A/332", "nt2": "///A/395", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.177, -0.154, -0.393, -7.198, -6.268, 0.770 ], "step_params": [ -0.435, -1.547, 3.686, -1.471, -0.779, 27.418 ], "heli_params": [ -3.040, 0.504, 3.745, -1.641, 3.101, 27.468 ], "bp2_params": [ 0.088, -0.289, -1.051, -9.759, -2.179, 3.146 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.686, "simple_Twist": 25.672, "simple_hRise": 3.749, "simple_hTwist": 25.725 }, { "index": 7, "nt1": "///A/333", "nt2": "///A/394", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 27, "helix_index": 13, "strand1": "GU", "strand2": "CA", "bp_type": "||", "helix_form": "A", "helical_rise": 3.376, "helical_rise_std": 0.022, "helical_radius": 9.401, "helical_radius_std": 0.046, "helical_axis": [ -0.529, -0.643, 0.554 ], "point1": [ 130.690, 237.677, 197.001 ], "point2": [ 128.905, 235.505, 198.871 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/335", "nt2": "///A/392", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.152, -0.195, -0.627, -5.992, 3.198, 0.316 ], "step_params": [ 0.581, -1.410, 3.310, -1.189, 1.019, 30.122 ], "heli_params": [ -2.917, -1.359, 3.237, 1.959, 2.286, 30.161 ], "bp2_params": [ -0.013, -0.089, 0.020, 3.185, 4.181, 2.309 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.310, "simple_Twist": 29.189, "simple_hRise": 3.234, "simple_hTwist": 29.230 }, { "index": 2, "nt1": "///A/336", "nt2": "///A/391", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 28, "helix_index": 14, "strand1": "GAU", "strand2": "CUG", "bp_type": "|||", "helix_form": "..", "helical_rise": 2.402, "helical_rise_std": 0.228, "helical_radius": 10.197, "helical_radius_std": 0.821, "helical_axis": [ -0.487, -0.785, 0.383 ], "point1": [ 122.867, 223.704, 192.989 ], "point2": [ 120.621, 220.085, 194.757 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/338", "nt2": "///A/387", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.198, -0.180, -0.351, -1.703, -2.841, -1.353 ], "step_params": [ -1.046, -2.293, 3.803, -5.013, 1.323, 30.401 ], "heli_params": [ -4.616, 0.822, 3.821, 2.499, 9.472, 30.829 ], "bp2_params": [ 0.158, -0.145, -0.827, -8.991, -0.363, -6.187 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.803, "simple_Twist": 28.547, "simple_hRise": 3.819, "simple_hTwist": 29.004 }, { "index": 2, "nt1": "///A/339", "nt2": "///A/386", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.158, -0.145, -0.827, -8.991, -0.363, -6.187 ], "step_params": [ -0.399, -1.233, 3.109, -3.763, 2.470, 37.849 ], "heli_params": [ -2.184, 0.160, 3.049, 3.791, 5.776, 38.106 ], "bp2_params": [ 1.898, -0.540, -0.106, 0.417, 1.784, -2.840 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.109, "simple_Twist": 28.471, "simple_hRise": 3.019, "simple_hTwist": 28.817 }, { "index": 3, "nt1": "///A/340", "nt2": "///A/385", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 29, "helix_index": 15, "strand1": "GGUC", "strand2": "CCGG", "bp_type": "||||", "helix_form": "A..", "helical_rise": 2.090, "helical_rise_std": 0.292, "helical_radius": 7.796, "helical_radius_std": 1.046, "helical_axis": [ 0.131, -0.331, 0.934 ], "point1": [ 102.748, 195.363, 192.271 ], "point2": [ 103.546, 193.342, 197.970 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/346", "nt2": "///A/359", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.231, -0.365, 0.811, -4.570, 1.504, -0.190 ], "step_params": [ -0.107, -1.604, 3.026, 0.975, 4.555, 32.942 ], "heli_params": [ -3.482, 0.332, 2.782, 7.982, -1.709, 33.260 ], "bp2_params": [ -0.218, -0.245, 0.637, 0.155, 3.700, 0.420 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.026, "simple_Twist": 33.038, "simple_hRise": 2.782, "simple_hTwist": 33.355 }, { "index": 2, "nt1": "///A/347", "nt2": "///A/358", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.218, -0.245, 0.637, 0.155, 3.700, 0.420 ], "step_params": [ 0.662, -1.523, 3.087, 5.879, 1.880, 43.433 ], "heli_params": [ -2.209, -0.357, 3.081, 2.525, -7.897, 43.848 ], "bp2_params": [ 1.992, -0.519, 0.097, 4.447, 1.207, -3.875 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.087, "simple_Twist": 31.678, "simple_hRise": 3.064, "simple_hTwist": 32.259 }, { "index": 3, "nt1": "///A/348", "nt2": "///A/357", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.992, -0.519, 0.097, 4.447, 1.207, -3.875 ], "step_params": [ -0.395, -2.643, 3.612, 7.409, 24.423, 37.146 ], "heli_params": [ -5.412, 1.108, 1.566, 33.890, -10.280, 44.812 ], "bp2_params": [ 0.150, -0.342, 0.601, -28.595, 4.563, -12.334 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.612, "simple_Twist": 47.219, "simple_hRise": 2.031, "simple_hTwist": 53.325 }, { "index": 4, "nt1": "///A/349", "nt2": "///A/356", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 30, "helix_index": 15, "strand1": "GC", "strand2": "CG", "bp_type": "||", "helix_form": "A", "helical_rise": 2.965, "helical_rise_std": 0.007, "helical_radius": 9.197, "helical_radius_std": 1.009, "helical_axis": [ -0.074, 0.643, -0.763 ], "point1": [ 103.509, 201.962, 189.248 ], "point2": [ 103.291, 203.867, 186.987 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/361", "nt2": "///A/378", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.199, -0.230, -0.589, -4.457, -0.476, -1.532 ], "step_params": [ 0.424, -1.473, 2.938, 1.440, 2.171, 41.653 ], "heli_params": [ -2.271, -0.461, 2.874, 3.050, -2.023, 41.731 ], "bp2_params": [ 0.210, -0.242, -0.740, 3.763, -0.977, -0.582 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.938, "simple_Twist": 39.851, "simple_hRise": 2.870, "simple_hTwist": 39.933 }, { "index": 2, "nt1": "///A/362", "nt2": "///A/377", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 31, "helix_index": 14, "strand1": "AGG", "strand2": "UCC", "bp_type": "|||", "helix_form": "AA", "helical_rise": 3.030, "helical_rise_std": 0.223, "helical_radius": 9.527, "helical_radius_std": 0.228, "helical_axis": [ 0.023, -0.991, 0.130 ], "point1": [ 114.994, 209.054, 194.516 ], "point2": [ 115.134, 203.111, 195.295 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/369", "nt2": "///A/381", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.030, -0.048, 0.155, -7.623, -3.698, -2.535 ], "step_params": [ -0.620, -1.629, 3.677, -0.433, 1.721, 30.652 ], "heli_params": [ -3.453, 1.077, 3.590, 3.252, 0.818, 30.702 ], "bp2_params": [ -0.184, -0.208, -0.612, -7.651, 0.029, 0.721 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.677, "simple_Twist": 32.033, "simple_hRise": 3.594, "simple_hTwist": 32.080 }, { "index": 2, "nt1": "///A/370", "nt2": "///A/380", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.184, -0.208, -0.612, -7.651, 0.029, 0.721 ], "step_params": [ 0.144, -1.710, 3.291, -1.153, 3.475, 30.583 ], "heli_params": [ -3.882, -0.490, 3.075, 6.558, 2.176, 30.796 ], "bp2_params": [ -0.139, -0.233, -0.807, -4.831, 1.556, -2.830 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.291, "simple_Twist": 30.169, "simple_hRise": 3.071, "simple_hTwist": 30.385 }, { "index": 3, "nt1": "///A/371", "nt2": "///A/379", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 32, "helix_index": 17, "strand1": "CGGCGGAA", "strand2": "GCUGCCUU", "bp_type": "||||||||", "helix_form": "....A..", "helical_rise": 2.159, "helical_rise_std": 0.504, "helical_radius": 9.795, "helical_radius_std": 1.229, "helical_axis": [ -0.121, -0.890, -0.441 ], "point1": [ 186.687, 241.305, 163.444 ], "point2": [ 184.897, 228.159, 156.934 ], "num_pairs": 8, "pairs": [ { "index": 1, "nt1": "///A/422", "nt2": "///A/446", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.143, -0.145, 0.213, 4.218, -1.962, 1.170 ], "step_params": [ -0.458, -2.605, 3.133, -2.438, 1.896, 31.415 ], "heli_params": [ -5.120, 0.416, 3.001, 3.492, 4.488, 31.563 ], "bp2_params": [ -0.121, -0.210, -0.030, -2.945, -3.508, -1.277 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.133, "simple_Twist": 33.688, "simple_hRise": 3.011, "simple_hTwist": 33.825 }, { "index": 2, "nt1": "///A/423", "nt2": "///A/445", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.121, -0.210, -0.030, -2.945, -3.508, -1.277 ], "step_params": [ -0.112, -1.550, 3.314, -8.061, 16.357, 19.851 ], "heli_params": [ -6.953, -1.544, 1.557, 38.531, 18.988, 26.893 ], "bp2_params": [ -2.627, -0.643, -0.007, -6.374, 12.008, -10.563 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.314, "simple_Twist": 32.202, "simple_hRise": 2.260, "simple_hTwist": 36.888 }, { "index": 3, "nt1": "///A/424", "nt2": "///A/444", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.627, -0.643, -0.007, -6.374, 12.008, -10.563 ], "step_params": [ 0.380, -1.820, 3.054, -0.491, 7.190, 47.126 ], "heli_params": [ -2.768, -0.506, 2.760, 8.931, 0.610, 47.643 ], "bp2_params": [ 0.227, -0.244, -0.084, 3.150, 14.661, 0.955 ], "groove_widths": [ 17.411, null, 14.806, null ], "simple_Rise": 3.054, "simple_Twist": 32.047, "simple_hRise": 2.590, "simple_hTwist": 32.827 }, { "index": 4, "nt1": "///A/425", "nt2": "///A/443", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.227, -0.244, -0.084, 3.150, 14.661, 0.955 ], "step_params": [ 0.804, -1.771, 3.139, 0.401, 4.702, 27.545 ], "heli_params": [ -4.692, -1.578, 2.815, 9.784, -0.835, 27.939 ], "bp2_params": [ -0.147, -0.157, 0.204, 2.826, 9.415, 3.074 ], "groove_widths": [ 17.184, 15.657, 16.952, 12.095 ], "simple_Rise": 3.139, "simple_Twist": 30.506, "simple_hRise": 2.851, "simple_hTwist": 30.860 }, { "index": 5, "nt1": "///A/426", "nt2": "///A/442", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.147, -0.157, 0.204, 2.826, 9.415, 3.074 ], "step_params": [ 0.431, -1.700, 3.181, 1.860, 3.598, 32.146 ], "heli_params": [ -3.649, -0.461, 2.998, 6.465, -3.343, 32.393 ], "bp2_params": [ -0.165, -0.239, 0.110, 2.946, 1.747, -2.580 ], "groove_widths": [ 16.671, null, 19.336, null ], "simple_Rise": 3.181, "simple_Twist": 31.704, "simple_hRise": 2.995, "simple_hTwist": 31.955 }, { "index": 6, "nt1": "///A/427", "nt2": "///A/441", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.165, -0.239, 0.110, 2.946, 1.747, -2.580 ], "step_params": [ 0.956, -3.093, 2.998, 1.903, 6.732, 26.527 ], "heli_params": [ -7.876, -1.636, 2.222, 14.356, -4.058, 27.418 ], "bp2_params": [ -0.051, -0.206, 0.246, -1.987, -3.250, 3.438 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.998, "simple_Twist": 25.523, "simple_hRise": 2.188, "simple_hTwist": 26.449 }, { "index": 7, "nt1": "///A/428", "nt2": "///A/440", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.051, -0.206, 0.246, -1.987, -3.250, 3.438 ], "step_params": [ -0.005, -1.544, 3.632, 21.554, 11.690, 39.834 ], "heli_params": [ -3.002, 1.938, 2.759, 15.511, -28.599, 46.513 ], "bp2_params": [ 0.020, -0.117, -0.947, -7.796, -31.517, 1.923 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.632, "simple_Twist": 39.249, "simple_hRise": 2.742, "simple_hTwist": 46.021 }, { "index": 8, "nt1": "///A/429", "nt2": "///A/439", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 33, "helix_index": 16, "strand1": "GGGAG", "strand2": "CCCUC", "bp_type": "|||||", "helix_form": "..AA", "helical_rise": 3.220, "helical_rise_std": 0.234, "helical_radius": 9.275, "helical_radius_std": 0.605, "helical_axis": [ 0.477, -0.715, -0.511 ], "point1": [ 167.424, 254.151, 148.008 ], "point2": [ 173.568, 244.946, 141.420 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/453", "nt2": "///A/468", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.191, -0.225, 0.784, 2.342, 2.579, 0.624 ], "step_params": [ 0.084, -2.385, 3.648, 8.300, 16.985, 34.486 ], "heli_params": [ -5.514, 0.831, 2.239, 26.344, -12.873, 39.189 ], "bp2_params": [ -0.209, -0.251, -0.964, -8.833, -7.738, 3.263 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.648, "simple_Twist": 34.661, "simple_hRise": 2.247, "simple_hTwist": 39.342 }, { "index": 2, "nt1": "///A/454", "nt2": "///A/467", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.209, -0.251, -0.964, -8.833, -7.738, 3.263 ], "step_params": [ -0.919, -1.506, 3.838, -2.237, 1.780, 28.133 ], "heli_params": [ -3.565, 1.274, 3.797, 3.651, 4.586, 28.275 ], "bp2_params": [ -0.125, -0.189, -0.871, -12.180, 0.498, -0.497 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.838, "simple_Twist": 27.749, "simple_hRise": 3.796, "simple_hTwist": 27.893 }, { "index": 3, "nt1": "///A/455", "nt2": "///A/466", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.125, -0.189, -0.871, -12.180, 0.498, -0.497 ], "step_params": [ 0.067, -0.984, 3.153, -2.760, 4.056, 31.509 ], "heli_params": [ -2.489, -0.597, 2.989, 7.413, 5.045, 31.879 ], "bp2_params": [ 0.106, -0.317, -1.003, -2.794, 3.242, 0.511 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.153, "simple_Twist": 30.162, "simple_hRise": 2.980, "simple_hTwist": 30.549 }, { "index": 4, "nt1": "///A/456", "nt2": "///A/465", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.106, -0.317, -1.003, -2.794, 3.242, 0.511 ], "step_params": [ -0.034, -1.122, 3.275, -4.441, -1.476, 35.486 ], "heli_params": [ -1.612, -0.589, 3.298, -2.409, 7.248, 35.784 ], "bp2_params": [ -0.231, -0.202, 0.076, 10.512, 8.828, -2.225 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.275, "simple_Twist": 37.171, "simple_hRise": 3.298, "simple_hTwist": 37.454 }, { "index": 5, "nt1": "///A/457", "nt2": "///A/464", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 34, "helix_index": 18, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.050, "helical_rise_std": 0.011, "helical_radius": 9.829, "helical_radius_std": 0.214, "helical_axis": [ 0.856, 0.011, 0.518 ], "point1": [ 163.803, 201.686, 204.425 ], "point2": [ 166.413, 201.721, 206.003 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/508", "nt2": "///A/515", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.185, -0.155, -0.282, -0.515, -2.055, 0.482 ], "step_params": [ 0.172, -2.143, 3.205, -2.710, 3.088, 29.330 ], "heli_params": [ -4.810, -0.877, 2.941, 6.062, 5.320, 29.610 ], "bp2_params": [ 0.176, -0.168, 0.324, 2.697, 2.435, 0.996 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.205, "simple_Twist": 29.287, "simple_hRise": 2.941, "simple_hTwist": 29.568 }, { "index": 2, "nt1": "///A/509", "nt2": "///A/514", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 35, "helix_index": 20, "strand1": "CCCC", "strand2": "GGGG", "bp_type": "||||", "helix_form": "AAA", "helical_rise": 2.149, "helical_rise_std": 0.155, "helical_radius": 9.589, "helical_radius_std": 0.526, "helical_axis": [ 0.544, -0.132, 0.829 ], "point1": [ 130.248, 177.132, 225.842 ], "point2": [ 133.685, 176.295, 231.080 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/531", "nt2": "///A/542", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.169, -0.198, 0.416, 7.483, 0.556, 0.336 ], "step_params": [ -0.825, -2.337, 3.309, -4.266, 4.208, 30.325 ], "heli_params": [ -5.188, 0.737, 3.050, 7.946, 8.056, 30.898 ], "bp2_params": [ 0.191, -0.229, 0.589, 0.704, 8.937, 2.433 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.309, "simple_Twist": 30.099, "simple_hRise": 3.047, "simple_hTwist": 30.676 }, { "index": 2, "nt1": "///A/532", "nt2": "///A/541", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.191, -0.229, 0.589, 0.704, 8.937, 2.433 ], "step_params": [ -0.162, -2.241, 3.193, 0.406, 7.287, 33.909 ], "heli_params": [ -4.775, 0.328, 2.666, 12.318, -0.687, 34.663 ], "bp2_params": [ 0.254, -0.187, 0.427, -0.151, 10.402, 2.114 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.193, "simple_Twist": 33.998, "simple_hRise": 2.668, "simple_hTwist": 34.750 }, { "index": 3, "nt1": "///A/533", "nt2": "///A/540", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.254, -0.187, 0.427, -0.151, 10.402, 2.114 ], "step_params": [ -0.682, -2.350, 3.043, 0.430, 6.744, 24.757 ], "heli_params": [ -6.884, 1.638, 2.320, 15.367, -0.980, 25.649 ], "bp2_params": [ 0.260, -0.156, 0.438, 4.453, 16.439, 4.002 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.043, "simple_Twist": 24.470, "simple_hRise": 2.310, "simple_hTwist": 25.372 }, { "index": 4, "nt1": "///A/534", "nt2": "///A/539", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 36, "helix_index": 22, "strand1": "GUCA", "strand2": "CGGU", "bp_type": "||||", "helix_form": "AAA", "helical_rise": 2.707, "helical_rise_std": 0.095, "helical_radius": 8.784, "helical_radius_std": 0.421, "helical_axis": [ -0.986, -0.039, 0.162 ], "point1": [ 149.569, 140.695, 180.260 ], "point2": [ 141.547, 140.382, 181.577 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/579", "nt2": "///A/604", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.191, -0.134, -0.195, -8.936, -0.090, -1.208 ], "step_params": [ -0.082, -1.013, 3.147, -3.264, 5.052, 40.839 ], "heli_params": [ -1.952, -0.216, 3.003, 7.193, 4.647, 41.261 ], "bp2_params": [ 1.499, -0.394, 0.046, 0.378, 5.784, -0.891 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.147, "simple_Twist": 31.959, "simple_hRise": 2.950, "simple_hTwist": 32.505 }, { "index": 2, "nt1": "///A/580", "nt2": "///A/603", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.499, -0.394, 0.046, 0.378, 5.784, -0.891 ], "step_params": [ 0.207, -1.692, 3.058, 1.351, 5.359, 30.240 ], "heli_params": [ -4.130, -0.154, 2.731, 10.166, -2.563, 30.729 ], "bp2_params": [ 0.221, -0.201, 0.255, 6.397, 5.215, 1.151 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.058, "simple_Twist": 37.136, "simple_hRise": 2.801, "simple_hTwist": 37.530 }, { "index": 3, "nt1": "///A/581", "nt2": "///A/602", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.221, -0.201, 0.255, 6.397, 5.215, 1.151 ], "step_params": [ 0.549, -1.821, 3.458, 6.355, 21.896, 34.195 ], "heli_params": [ -4.827, -0.141, 2.047, 33.078, -9.601, 40.909 ], "bp2_params": [ 0.042, -0.124, -0.651, -7.698, 0.106, 1.457 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.458, "simple_Twist": 35.254, "simple_hRise": 2.094, "simple_hTwist": 41.786 }, { "index": 4, "nt1": "///A/582", "nt2": "///A/601", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 37, "helix_index": 22, "strand1": "GCCC", "strand2": "UGGG", "bp_type": "||||", "helix_form": ".AA", "helical_rise": 2.597, "helical_rise_std": 0.215, "helical_radius": 9.633, "helical_radius_std": 0.912, "helical_axis": [ -0.931, -0.141, 0.336 ], "point1": [ 131.803, 139.980, 183.785 ], "point2": [ 124.586, 138.885, 186.385 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/585", "nt2": "///A/598", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.351, -0.492, -0.706, -7.367, 5.458, -4.895 ], "step_params": [ 0.490, -1.336, 3.263, -3.301, 2.686, 39.374 ], "heli_params": [ -2.280, -1.101, 3.120, 3.973, 4.882, 39.595 ], "bp2_params": [ 0.201, -0.156, -0.136, 1.879, 8.989, 1.395 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.263, "simple_Twist": 25.327, "simple_hRise": 3.020, "simple_hTwist": 25.676 }, { "index": 2, "nt1": "///A/586", "nt2": "///A/597", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.201, -0.156, -0.136, 1.879, 8.989, 1.395 ], "step_params": [ 0.352, -1.796, 3.133, 3.790, 8.993, 32.687 ], "heli_params": [ -4.343, -0.062, 2.586, 15.552, -6.554, 34.075 ], "bp2_params": [ 0.206, -0.143, -0.357, 1.433, -0.321, 1.220 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.133, "simple_Twist": 32.673, "simple_hRise": 2.586, "simple_hTwist": 34.061 }, { "index": 3, "nt1": "///A/587", "nt2": "///A/596", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.206, -0.143, -0.357, 1.433, -0.321, 1.220 ], "step_params": [ 0.108, -2.075, 2.903, 3.963, 11.522, 32.067 ], "heli_params": [ -4.948, 0.306, 2.055, 19.979, -6.871, 34.247 ], "bp2_params": [ 0.165, -0.149, -0.492, 3.259, -3.355, 0.330 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.903, "simple_Twist": 32.244, "simple_hRise": 2.061, "simple_hTwist": 34.412 }, { "index": 4, "nt1": "///A/588", "nt2": "///A/595", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 38, "helix_index": 40, "strand1": "ACCGGC", "strand2": "UGGCCG", "bp_type": "||||||", "helix_form": "AAAAA", "helical_rise": 2.739, "helical_rise_std": 0.121, "helical_radius": 8.713, "helical_radius_std": 0.409, "helical_axis": [ -0.420, 0.251, -0.872 ], "point1": [ 158.165, 172.648, 196.717 ], "point2": [ 152.447, 176.066, 184.838 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/623", "nt2": "///A/1301", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.028, -0.088, -0.192, -5.150, -2.036, -2.761 ], "step_params": [ -0.295, -1.457, 3.258, -4.990, 0.839, 33.671 ], "heli_params": [ -2.622, -0.290, 3.231, 1.439, 8.555, 34.038 ], "bp2_params": [ 0.204, -0.151, 0.353, -1.921, 0.183, 1.124 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.258, "simple_Twist": 32.685, "simple_hRise": 3.229, "simple_hTwist": 33.064 }, { "index": 2, "nt1": "///A/624", "nt2": "///A/1300", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.204, -0.151, 0.353, -1.921, 0.183, 1.124 ], "step_params": [ -0.203, -1.544, 3.111, 0.656, 2.794, 33.436 ], "heli_params": [ -3.100, 0.452, 2.972, 4.844, -1.137, 33.556 ], "bp2_params": [ 0.167, -0.165, 0.290, 2.331, 0.723, -0.570 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.111, "simple_Twist": 33.584, "simple_hRise": 2.972, "simple_hTwist": 33.703 }, { "index": 3, "nt1": "///A/625", "nt2": "///A/1299", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.167, -0.165, 0.290, 2.331, 0.723, -0.570 ], "step_params": [ -0.020, -1.651, 3.035, -1.869, 19.343, 30.470 ], "heli_params": [ -4.848, -0.177, 1.716, 32.936, 3.182, 36.016 ], "bp2_params": [ -0.168, -0.163, 0.386, -2.655, 2.615, -0.204 ], "groove_widths": [ 18.038, null, 14.318, null ], "simple_Rise": 3.035, "simple_Twist": 32.581, "simple_hRise": 1.808, "simple_hTwist": 37.801 }, { "index": 4, "nt1": "///A/626", "nt2": "///A/1298", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.168, -0.163, 0.386, -2.655, 2.615, -0.204 ], "step_params": [ -0.234, -1.602, 3.350, -3.249, 2.720, 33.463 ], "heli_params": [ -3.206, -0.129, 3.222, 4.701, 5.614, 33.722 ], "bp2_params": [ -0.184, -0.152, 0.306, -3.331, 5.563, -0.123 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.350, "simple_Twist": 33.539, "simple_hRise": 3.222, "simple_hTwist": 33.798 }, { "index": 5, "nt1": "///A/627", "nt2": "///A/1297", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.184, -0.152, 0.306, -3.331, 5.563, -0.123 ], "step_params": [ 0.628, -1.582, 3.251, -3.626, 5.755, 39.910 ], "heli_params": [ -2.902, -1.296, 2.939, 8.357, 5.266, 40.463 ], "bp2_params": [ 0.218, -0.227, 0.750, -1.770, 9.088, 1.079 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.251, "simple_Twist": 37.849, "simple_hRise": 2.918, "simple_hTwist": 38.433 }, { "index": 6, "nt1": "///A/628", "nt2": "///A/1296", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 39, "helix_index": 24, "strand1": "UACGAUC", "strand2": "AUGCUGG", "bp_type": "|||||||", "helix_form": "AAAA..", "helical_rise": 2.570, "helical_rise_std": 0.265, "helical_radius": 9.301, "helical_radius_std": 0.516, "helical_axis": [ -0.650, 0.263, -0.713 ], "point1": [ 155.857, 193.877, 164.093 ], "point2": [ 145.864, 197.929, 153.122 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///A/633", "nt2": "///A/715", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.021, -0.134, -0.321, -5.872, -4.442, 0.114 ], "step_params": [ -0.869, -1.276, 3.448, -4.207, 7.073, 26.169 ], "heli_params": [ -4.485, 0.768, 3.102, 15.151, 9.012, 27.411 ], "bp2_params": [ 0.131, -0.050, -0.215, -4.205, 6.017, -4.523 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.448, "simple_Twist": 25.476, "simple_hRise": 3.089, "simple_hTwist": 26.751 }, { "index": 2, "nt1": "///A/634", "nt2": "///A/714", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.131, -0.050, -0.215, -4.205, 6.017, -4.523 ], "step_params": [ 0.890, -1.191, 3.220, -1.096, 7.123, 33.956 ], "heli_params": [ -3.029, -1.652, 2.889, 12.028, 1.851, 34.690 ], "bp2_params": [ 0.201, -0.148, 0.120, 1.608, 2.964, 0.312 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.220, "simple_Twist": 33.668, "simple_hRise": 2.885, "simple_hTwist": 34.409 }, { "index": 3, "nt1": "///A/635", "nt2": "///A/713", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.201, -0.148, 0.120, 1.608, 2.964, 0.312 ], "step_params": [ 0.790, -2.239, 2.897, 1.106, 12.411, 28.700 ], "heli_params": [ -5.933, -1.310, 1.824, 23.677, -2.110, 31.236 ], "bp2_params": [ -0.178, -0.192, 0.508, 0.614, 7.326, -0.093 ], "groove_widths": [ 17.889, null, 16.185, null ], "simple_Rise": 2.897, "simple_Twist": 30.673, "simple_hRise": 1.899, "simple_hTwist": 33.051 }, { "index": 4, "nt1": "///A/636", "nt2": "///A/712", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.178, -0.192, 0.508, 0.614, 7.326, -0.093 ], "step_params": [ 0.417, -2.236, 3.007, 3.337, 6.660, 37.152 ], "heli_params": [ -4.187, -0.272, 2.609, 10.325, -5.174, 37.866 ], "bp2_params": [ 0.045, -0.085, 0.241, 0.920, 9.297, 0.653 ], "groove_widths": [ 17.664, null, 17.043, null ], "simple_Rise": 3.007, "simple_Twist": 36.022, "simple_hRise": 2.594, "simple_hTwist": 36.759 }, { "index": 5, "nt1": "///A/637", "nt2": "///A/711", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.045, -0.085, 0.241, 0.920, 9.297, 0.653 ], "step_params": [ 0.090, -1.737, 3.275, 2.646, 3.243, 39.153 ], "heli_params": [ -2.956, 0.175, 3.126, 4.822, -3.935, 39.368 ], "bp2_params": [ 2.206, -0.215, 0.227, 7.550, 10.906, 5.945 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.275, "simple_Twist": 26.853, "simple_hRise": 3.042, "simple_hTwist": 27.172 }, { "index": 6, "nt1": "///A/638", "nt2": "///A/710", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.206, -0.215, 0.227, 7.550, 10.906, 5.945 ], "step_params": [ 0.026, -2.150, 3.072, 10.397, 11.331, 24.701 ], "heli_params": [ -6.306, 1.799, 1.804, 23.770, -21.811, 29.033 ], "bp2_params": [ 0.219, -0.169, -0.350, 1.619, -2.745, 0.538 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.072, "simple_Twist": 35.960, "simple_hRise": 2.243, "simple_hTwist": 39.010 }, { "index": 7, "nt1": "///A/639", "nt2": "///A/709", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 40, "helix_index": 24, "strand1": "CGUGC", "strand2": "GCAUG", "bp_type": "|||||", "helix_form": "AAAA", "helical_rise": 2.776, "helical_rise_std": 0.206, "helical_radius": 8.979, "helical_radius_std": 0.514, "helical_axis": [ -0.655, 0.140, -0.743 ], "point1": [ 141.420, 197.268, 148.574 ], "point2": [ 134.104, 198.827, 140.276 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/641", "nt2": "///A/707", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.230, -0.186, 0.207, 4.834, 5.983, 1.147 ], "step_params": [ 0.207, -1.917, 3.352, 8.093, 17.433, 33.784 ], "heli_params": [ -4.820, 0.584, 2.141, 27.420, -12.729, 38.730 ], "bp2_params": [ -0.136, -0.194, -0.490, -7.190, 0.927, -0.090 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.352, "simple_Twist": 35.966, "simple_hRise": 2.225, "simple_hTwist": 40.629 }, { "index": 2, "nt1": "///A/642", "nt2": "///A/706", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.136, -0.194, -0.490, -7.190, 0.927, -0.090 ], "step_params": [ -0.105, -1.294, 3.262, -1.563, 5.171, 27.807 ], "heli_params": [ -3.797, -0.134, 2.979, 10.633, 3.215, 28.317 ], "bp2_params": [ 0.040, -0.111, -0.403, -0.829, 1.884, 2.416 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.262, "simple_Twist": 26.903, "simple_hRise": 2.967, "simple_hTwist": 27.430 }, { "index": 3, "nt1": "///A/643", "nt2": "///A/705", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.040, -0.111, -0.403, -0.829, 1.884, 2.416 ], "step_params": [ 0.274, -1.550, 3.094, -6.583, 12.480, 30.214 ], "heli_params": [ -4.478, -1.413, 2.195, 22.466, 11.851, 33.276 ], "bp2_params": [ -1.389, -0.593, 0.864, 1.194, 9.008, -2.212 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.094, "simple_Twist": 37.915, "simple_hRise": 2.408, "simple_hTwist": 40.364 }, { "index": 4, "nt1": "///A/644", "nt2": "///A/704", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.389, -0.593, 0.864, 1.194, 9.008, -2.212 ], "step_params": [ 0.482, -1.334, 3.132, 2.114, 5.345, 35.394 ], "heli_params": [ -2.882, -0.501, 2.929, 8.720, -3.449, 35.843 ], "bp2_params": [ 0.270, -0.206, 0.581, 6.816, 6.431, 2.076 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.132, "simple_Twist": 26.242, "simple_hRise": 2.838, "simple_hTwist": 26.854 }, { "index": 5, "nt1": "///A/645", "nt2": "///A/703", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 41, "helix_index": 25, "strand1": "GGU", "strand2": "CCG", "bp_type": "|||", "helix_form": "A.", "helical_rise": 2.856, "helical_rise_std": 0.116, "helical_radius": 10.238, "helical_radius_std": 0.696, "helical_axis": [ -0.672, 0.106, 0.733 ], "point1": [ 140.939, 217.374, 138.164 ], "point2": [ 137.141, 217.975, 142.305 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/648", "nt2": "///A/670", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.179, -0.310, -0.435, -3.332, 13.254, -3.673 ], "step_params": [ 0.758, -1.069, 3.048, -2.227, 5.166, 31.562 ], "heli_params": [ -2.772, -1.733, 2.783, 9.404, 4.053, 32.047 ], "bp2_params": [ -0.200, -0.162, -0.327, 5.591, 13.082, -3.648 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.048, "simple_Twist": 31.641, "simple_hRise": 2.784, "simple_hTwist": 32.125 }, { "index": 2, "nt1": "///A/649", "nt2": "///A/669", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.200, -0.162, -0.327, 5.591, 13.082, -3.648 ], "step_params": [ 1.061, -2.038, 3.418, 0.787, 3.278, 36.753 ], "heli_params": [ -3.673, -1.567, 3.251, 5.185, -1.244, 36.902 ], "bp2_params": [ 2.103, -0.443, -0.139, 7.360, 10.449, -3.020 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.418, "simple_Twist": 24.246, "simple_hRise": 3.151, "simple_hTwist": 24.475 }, { "index": 3, "nt1": "///A/650", "nt2": "///A/668", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 42, "helix_index": 25, "strand1": "GCA", "strand2": "CGU", "bp_type": "|||", "helix_form": "AA", "helical_rise": 1.908, "helical_rise_std": 0.110, "helical_radius": 8.403, "helical_radius_std": 0.589, "helical_axis": [ -0.035, 0.213, 0.976 ], "point1": [ 134.745, 216.473, 159.450 ], "point2": [ 134.615, 217.257, 163.032 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/654", "nt2": "///A/664", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.057, -0.399, -1.433, -12.292, 1.760, -3.042 ], "step_params": [ -0.017, -1.009, 3.311, -4.600, 5.243, 31.151 ], "heli_params": [ -2.778, -0.796, 3.076, 9.612, 8.434, 31.903 ], "bp2_params": [ 0.193, -0.243, -0.666, 0.307, 2.354, -2.390 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.311, "simple_Twist": 29.962, "simple_hRise": 3.063, "simple_hTwist": 30.745 }, { "index": 2, "nt1": "///A/655", "nt2": "///A/663", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.193, -0.243, -0.666, 0.307, 2.354, -2.390 ], "step_params": [ 1.042, -1.865, 3.212, -0.378, 10.495, 27.464 ], "heli_params": [ -5.661, -2.126, 2.341, 21.150, 0.761, 29.368 ], "bp2_params": [ 0.143, -0.099, 0.263, 2.269, 13.108, 0.576 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.212, "simple_Twist": 27.634, "simple_hRise": 2.347, "simple_hTwist": 29.526 }, { "index": 3, "nt1": "///A/656", "nt2": "///A/662", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 43, "helix_index": 26, "strand1": "GC", "strand2": "CG", "bp_type": "||", "helix_form": "A", "helical_rise": 2.978, "helical_rise_std": 0.025, "helical_radius": 9.202, "helical_radius_std": 0.287, "helical_axis": [ 0.767, -0.393, 0.507 ], "point1": [ 155.250, 216.835, 128.854 ], "point2": [ 157.534, 215.664, 130.365 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/674", "nt2": "///A/681", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.235, -0.156, 0.155, -3.873, 8.126, 1.727 ], "step_params": [ -0.131, -1.444, 3.124, 1.184, 4.185, 30.414 ], "heli_params": [ -3.486, 0.463, 2.897, 7.926, -2.242, 30.716 ], "bp2_params": [ 0.199, -0.154, -0.062, 5.357, 11.174, 0.590 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.124, "simple_Twist": 27.980, "simple_hRise": 2.873, "simple_hTwist": 28.309 }, { "index": 2, "nt1": "///A/675", "nt2": "///A/680", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 44, "helix_index": 27, "strand1": "GUCU", "strand2": "CGGG", "bp_type": "||||", "helix_form": "...", "helical_rise": 2.294, "helical_rise_std": 0.224, "helical_radius": 8.553, "helical_radius_std": 0.434, "helical_axis": [ 0.572, 0.737, -0.359 ], "point1": [ 158.557, 201.780, 115.629 ], "point2": [ 162.474, 206.825, 113.173 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/684", "nt2": "///A/696", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.250, -0.194, -0.975, -12.771, -7.339, 2.073 ], "step_params": [ -0.216, -0.586, 2.753, -1.367, 3.867, 35.040 ], "heli_params": [ -1.446, 0.187, 2.682, 6.395, 2.261, 35.272 ], "bp2_params": [ 1.488, -0.589, -0.998, 3.518, -3.994, -3.778 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.753, "simple_Twist": 25.994, "simple_hRise": 2.647, "simple_hTwist": 26.310 }, { "index": 2, "nt1": "///A/685", "nt2": "///A/695", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.488, -0.589, -0.998, 3.518, -3.994, -3.778 ], "step_params": [ -0.302, -1.643, 2.969, -4.305, 19.598, 32.908 ], "heli_params": [ -4.422, 0.037, 1.775, 31.244, 6.864, 38.397 ], "bp2_params": [ 0.070, -0.180, -0.398, 6.756, 17.088, -0.963 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.969, "simple_Twist": 40.071, "simple_hRise": 2.016, "simple_hTwist": 44.628 }, { "index": 3, "nt1": "///A/686", "nt2": "///A/694", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.070, -0.180, -0.398, 6.756, 17.088, -0.963 ], "step_params": [ -0.821, -1.466, 2.748, 5.539, 9.979, 30.460 ], "heli_params": [ -3.936, 2.197, 2.005, 18.210, -10.107, 32.480 ], "bp2_params": [ 1.277, -0.211, -0.967, 29.965, 26.318, -9.566 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.748, "simple_Twist": 23.023, "simple_hRise": 1.732, "simple_hTwist": 25.662 }, { "index": 4, "nt1": "///A/687", "nt2": "///A/693", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 45, "helix_index": 23, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": ".", "helical_rise": 3.332, "helical_rise_std": 0.075, "helical_radius": 10.065, "helical_radius_std": 1.269, "helical_axis": [ 0.691, 0.520, 0.502 ], "point1": [ 162.407, 179.906, 168.632 ], "point2": [ 164.707, 181.635, 170.301 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/718", "nt2": "///A/856", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.086, -0.155, -0.503, 11.435, 9.848, -1.449 ], "step_params": [ -0.624, -1.889, 3.379, -6.042, 5.918, 35.240 ], "heli_params": [ -3.875, 0.151, 3.093, 9.605, 9.807, 36.209 ], "bp2_params": [ 0.085, -0.173, 0.097, 5.768, 7.233, -1.435 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.379, "simple_Twist": 35.066, "simple_hRise": 3.091, "simple_hTwist": 36.040 }, { "index": 2, "nt1": "///A/719", "nt2": "///A/855", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 46, "helix_index": 28, "strand1": "CCAGGU", "strand2": "GGUCCA", "bp_type": "||||||", "helix_form": "AAAA.", "helical_rise": 2.663, "helical_rise_std": 0.263, "helical_radius": 9.088, "helical_radius_std": 0.581, "helical_axis": [ 0.661, 0.498, 0.562 ], "point1": [ 175.595, 198.174, 183.425 ], "point2": [ 184.265, 204.700, 190.794 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/725", "nt2": "///A/846", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.190, -0.127, -0.271, -7.142, -5.095, 2.429 ], "step_params": [ -0.359, -1.247, 3.590, -6.227, 2.734, 34.391 ], "heli_params": [ -2.521, -0.426, 3.493, 4.569, 10.405, 35.037 ], "bp2_params": [ 0.201, -0.183, -0.363, -2.371, -3.417, 0.040 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.590, "simple_Twist": 34.664, "simple_hRise": 3.495, "simple_hTwist": 35.304 }, { "index": 2, "nt1": "///A/726", "nt2": "///A/845", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.201, -0.183, -0.363, -2.371, -3.417, 0.040 ], "step_params": [ -0.685, -1.766, 3.077, -9.056, 7.291, 29.096 ], "heli_params": [ -4.529, -0.289, 2.658, 13.836, 17.186, 31.286 ], "bp2_params": [ -0.164, 0.166, 0.693, -4.703, 4.108, -5.061 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.077, "simple_Twist": 31.006, "simple_hRise": 2.694, "simple_hTwist": 33.064 }, { "index": 3, "nt1": "///A/727", "nt2": "///A/844", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.164, 0.166, 0.693, -4.703, 4.108, -5.061 ], "step_params": [ 0.295, -1.478, 3.122, -1.334, 3.609, 35.142 ], "heli_params": [ -2.930, -0.669, 2.948, 5.954, 2.201, 35.345 ], "bp2_params": [ -0.130, -0.221, 0.765, 0.370, 2.299, -0.676 ], "groove_widths": [ 17.138, null, 14.341, null ], "simple_Rise": 3.122, "simple_Twist": 35.318, "simple_hRise": 2.949, "simple_hTwist": 35.520 }, { "index": 4, "nt1": "///A/728", "nt2": "///A/843", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.130, -0.221, 0.765, 0.370, 2.299, -0.676 ], "step_params": [ 0.449, -2.138, 3.152, 1.382, 8.375, 31.805 ], "heli_params": [ -5.044, -0.585, 2.539, 14.952, -2.468, 32.890 ], "bp2_params": [ -0.169, -0.235, 0.624, -3.402, -9.195, -1.445 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.152, "simple_Twist": 31.628, "simple_hRise": 2.535, "simple_hTwist": 32.719 }, { "index": 5, "nt1": "///A/729", "nt2": "///A/842", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.169, -0.235, 0.624, -3.402, -9.195, -1.445 ], "step_params": [ -0.993, -1.662, 3.312, 0.613, -0.530, 40.559 ], "heli_params": [ -2.338, 1.502, 3.318, -0.764, -0.883, 40.567 ], "bp2_params": [ -0.152, -0.094, 0.385, -8.863, -7.710, -5.116 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.312, "simple_Twist": 40.408, "simple_hRise": 3.318, "simple_hTwist": 40.416 }, { "index": 6, "nt1": "///A/730", "nt2": "///A/841", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 47, "helix_index": 29, "strand1": "ACCCAUGUC", "strand2": "UGGGUGUGG", "bp_type": "|||||||||", "helix_form": "AA.A....", "helical_rise": 2.655, "helical_rise_std": 0.378, "helical_radius": 9.498, "helical_radius_std": 0.763, "helical_axis": [ 0.745, -0.050, 0.666 ], "point1": [ 191.500, 203.210, 207.765 ], "point2": [ 207.138, 202.161, 221.742 ], "num_pairs": 9, "pairs": [ { "index": 1, "nt1": "///A/736", "nt2": "///A/820", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.043, -0.103, 0.543, -4.781, -2.082, -4.038 ], "step_params": [ 0.099, -1.254, 3.547, -3.013, 2.260, 29.531 ], "heli_params": [ -2.947, -0.867, 3.416, 4.411, 5.882, 29.765 ], "bp2_params": [ 0.202, -0.159, 0.385, 1.018, 4.440, 1.885 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.547, "simple_Twist": 28.912, "simple_hRise": 3.413, "simple_hTwist": 29.152 }, { "index": 2, "nt1": "///A/737", "nt2": "///A/819", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.202, -0.159, 0.385, 1.018, 4.440, 1.885 ], "step_params": [ 0.435, -2.117, 3.186, -3.584, 0.096, 33.462 ], "heli_params": [ -3.672, -1.317, 3.118, 0.166, 6.202, 33.648 ], "bp2_params": [ 0.247, -0.235, 0.611, 6.736, 2.999, 0.662 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.186, "simple_Twist": 33.502, "simple_hRise": 3.118, "simple_hTwist": 33.688 }, { "index": 3, "nt1": "///A/738", "nt2": "///A/818", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.247, -0.235, 0.611, 6.736, 2.999, 0.662 ], "step_params": [ -0.705, -2.464, 3.229, 4.677, 3.627, 27.438 ], "heli_params": [ -5.871, 2.470, 2.732, 7.536, -9.717, 28.058 ], "bp2_params": [ 0.199, -0.109, -0.029, 3.607, 0.235, 0.900 ], "groove_widths": [ 17.248, null, 17.464, null ], "simple_Rise": 3.229, "simple_Twist": 27.457, "simple_hRise": 2.732, "simple_hTwist": 28.075 }, { "index": 4, "nt1": "///A/739", "nt2": "///A/817", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.199, -0.109, -0.029, 3.607, 0.235, 0.900 ], "step_params": [ -0.164, -1.765, 3.099, -0.356, 16.415, 35.167 ], "heli_params": [ -4.349, 0.210, 2.102, 25.521, 0.554, 38.701 ], "bp2_params": [ 0.045, -0.073, 0.359, 1.888, -0.646, -0.788 ], "groove_widths": [ 17.423, 15.771, 15.471, 11.497 ], "simple_Rise": 3.099, "simple_Twist": 35.865, "simple_hRise": 2.125, "simple_hTwist": 39.331 }, { "index": 5, "nt1": "///A/740", "nt2": "///A/816", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.045, -0.073, 0.359, 1.888, -0.646, -0.788 ], "step_params": [ 0.359, -1.525, 3.584, 2.560, 1.190, 38.641 ], "heli_params": [ -2.458, -0.199, 3.553, 1.796, -3.862, 38.740 ], "bp2_params": [ 2.084, -0.380, 0.451, -0.807, -0.765, -3.372 ], "groove_widths": [ 17.394, 15.950, 16.448, 12.425 ], "simple_Rise": 3.584, "simple_Twist": 27.754, "simple_hRise": 3.534, "simple_hTwist": 27.895 }, { "index": 6, "nt1": "///A/741", "nt2": "///A/815", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.084, -0.380, 0.451, -0.807, -0.765, -3.372 ], "step_params": [ 0.750, -2.813, 3.160, 10.930, 7.568, 13.578 ], "heli_params": [ -11.851, 2.522, 1.579, 25.384, -36.661, 18.981 ], "bp2_params": [ -2.042, -0.368, -0.579, -1.967, -1.154, -1.791 ], "groove_widths": [ 16.952, null, 17.191, null ], "simple_Rise": 3.160, "simple_Twist": 35.842, "simple_hRise": 2.643, "simple_hTwist": 38.153 }, { "index": 7, "nt1": "///A/742", "nt2": "///A/814", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.042, -0.368, -0.579, -1.967, -1.154, -1.791 ], "step_params": [ 0.170, -1.119, 3.319, -2.919, 2.823, 46.873 ], "heli_params": [ -1.635, -0.454, 3.235, 3.541, 3.661, 47.038 ], "bp2_params": [ 2.020, -0.361, 0.156, 0.094, -0.244, -1.390 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.319, "simple_Twist": 24.855, "simple_hRise": 3.134, "simple_hTwist": 25.180 }, { "index": 8, "nt1": "///A/743", "nt2": "///A/813", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.020, -0.361, 0.156, 0.094, -0.244, -1.390 ], "step_params": [ -0.363, -1.802, 3.294, 2.706, 1.920, 29.507 ], "heli_params": [ -3.913, 1.268, 3.128, 3.754, -5.291, 29.689 ], "bp2_params": [ 0.154, -0.140, 0.219, -1.782, 6.426, -1.400 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.294, "simple_Twist": 39.549, "simple_hRise": 3.176, "simple_hTwist": 39.682 }, { "index": 9, "nt1": "///A/744", "nt2": "///A/812", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 48, "helix_index": 30, "strand1": "GGG", "strand2": "CCC", "bp_type": "|||", "helix_form": "A.", "helical_rise": 1.613, "helical_rise_std": 0.358, "helical_radius": 9.478, "helical_radius_std": 0.545, "helical_axis": [ 0.619, 0.364, 0.696 ], "point1": [ 214.711, 189.128, 226.932 ], "point2": [ 216.556, 190.212, 229.007 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/747", "nt2": "///A/779", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.142, -0.130, -0.379, -6.254, 7.636, -0.604 ], "step_params": [ 0.433, -1.903, 3.240, 1.292, 12.661, 30.707 ], "heli_params": [ -5.211, -0.567, 2.313, 22.722, -2.318, 33.181 ], "bp2_params": [ -0.106, -0.221, -0.882, -3.648, -2.427, 1.390 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.240, "simple_Twist": 30.870, "simple_hRise": 2.318, "simple_hTwist": 33.332 }, { "index": 2, "nt1": "///A/748", "nt2": "///A/778", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.106, -0.221, -0.882, -3.648, -2.427, 1.390 ], "step_params": [ 0.253, -2.165, 3.999, 0.869, -1.209, 30.874 ], "heli_params": [ -3.774, -0.266, 4.084, -2.268, -1.631, 30.909 ], "bp2_params": [ -0.031, -0.152, -0.976, -17.426, 4.746, -3.349 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.999, "simple_Twist": 30.281, "simple_hRise": 4.086, "simple_hTwist": 30.317 }, { "index": 3, "nt1": "///A/749", "nt2": "///A/777", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 49, "helix_index": 30, "strand1": "GUUCAG", "strand2": "UAAGUC", "bp_type": "||||||", "helix_form": "AAAA.", "helical_rise": 2.727, "helical_rise_std": 0.144, "helical_radius": 8.938, "helical_radius_std": 0.482, "helical_axis": [ 0.952, 0.307, 0.013 ], "point1": [ 237.157, 192.916, 231.709 ], "point2": [ 250.195, 197.126, 231.887 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/754", "nt2": "///A/771", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.953, -0.520, 0.031, -0.031, 4.476, 1.215 ], "step_params": [ 0.146, -1.759, 3.120, 0.417, 2.694, 36.310 ], "heli_params": [ -3.165, -0.180, 2.987, 4.316, -0.669, 36.409 ], "bp2_params": [ 0.013, -0.184, -0.058, 3.049, 1.942, 3.800 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.120, "simple_Twist": 30.735, "simple_hRise": 2.960, "simple_hTwist": 30.853 }, { "index": 2, "nt1": "///A/755", "nt2": "///A/770", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.013, -0.184, -0.058, 3.049, 1.942, 3.800 ], "step_params": [ 0.057, -1.646, 3.041, 4.421, 12.865, 32.001 ], "heli_params": [ -4.415, 0.473, 2.224, 22.128, -7.605, 34.703 ], "bp2_params": [ -0.007, -0.174, -0.322, -0.907, -1.210, 1.483 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.041, "simple_Twist": 32.082, "simple_hRise": 2.226, "simple_hTwist": 34.777 }, { "index": 3, "nt1": "///A/756", "nt2": "///A/769", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.007, -0.174, -0.322, -0.907, -1.210, 1.483 ], "step_params": [ 0.125, -1.395, 2.948, 0.390, 3.951, 32.873 ], "heli_params": [ -3.033, -0.162, 2.768, 6.950, -0.686, 33.105 ], "bp2_params": [ 0.185, -0.168, -0.213, 3.441, -0.894, 0.971 ], "groove_widths": [ 16.947, null, 15.762, null ], "simple_Rise": 2.948, "simple_Twist": 31.751, "simple_hRise": 2.760, "simple_hTwist": 31.992 }, { "index": 4, "nt1": "///A/757", "nt2": "///A/768", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.185, -0.168, -0.213, 3.441, -0.894, 0.971 ], "step_params": [ -0.013, -1.583, 3.004, -4.134, 11.704, 31.889 ], "heli_params": [ -4.246, -0.526, 2.282, 20.364, 7.193, 34.161 ], "bp2_params": [ -0.031, -0.219, -0.082, 1.994, 9.569, 4.795 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.004, "simple_Twist": 33.036, "simple_hRise": 2.312, "simple_hTwist": 35.230 }, { "index": 5, "nt1": "///A/758", "nt2": "///A/767", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.031, -0.219, -0.082, 1.994, 9.569, 4.795 ], "step_params": [ 1.219, -2.103, 3.452, 3.756, 10.442, 23.460 ], "heli_params": [ -7.438, -1.729, 2.468, 24.033, -8.643, 25.919 ], "bp2_params": [ -1.458, 0.345, -1.376, -6.960, 9.554, 26.481 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.452, "simple_Twist": 32.112, "simple_hRise": 2.773, "simple_hTwist": 33.928 }, { "index": 6, "nt1": "///A/759", "nt2": "///A/766", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 50, "helix_index": 30, "strand1": "CCC", "strand2": "GGG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.515, "helical_rise_std": 0.126, "helical_radius": 9.015, "helical_radius_std": 0.367, "helical_axis": [ -0.850, -0.155, -0.503 ], "point1": [ 205.368, 180.201, 223.193 ], "point2": [ 201.084, 179.419, 220.659 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/783", "nt2": "///A/807", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.160, -0.231, -0.692, -7.123, 5.062, -1.881 ], "step_params": [ 0.173, -1.486, 3.038, -3.192, 5.641, 32.401 ], "heli_params": [ -3.464, -0.786, 2.719, 9.984, 5.650, 33.026 ], "bp2_params": [ 0.189, -0.185, -0.367, 2.103, 11.513, -0.252 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.038, "simple_Twist": 32.174, "simple_hRise": 2.716, "simple_hTwist": 32.803 }, { "index": 2, "nt1": "///A/784", "nt2": "///A/806", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.189, -0.185, -0.367, 2.103, 11.513, -0.252 ], "step_params": [ 0.246, -2.040, 3.002, 4.879, 13.866, 34.228 ], "heli_params": [ -4.697, 0.140, 2.065, 22.327, -7.856, 37.164 ], "bp2_params": [ 0.107, -0.154, -0.770, 3.799, 2.598, -1.004 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.002, "simple_Twist": 34.582, "simple_hRise": 2.076, "simple_hTwist": 37.488 }, { "index": 3, "nt1": "///A/785", "nt2": "///A/805", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 51, "helix_index": 30, "strand1": "CGCAC", "strand2": "GCGUG", "bp_type": "|||||", "helix_form": ".AAA", "helical_rise": 2.704, "helical_rise_std": 0.279, "helical_radius": 8.809, "helical_radius_std": 0.397, "helical_axis": [ -0.593, -0.378, -0.711 ], "point1": [ 199.956, 174.960, 216.601 ], "point2": [ 193.575, 170.893, 208.958 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/787", "nt2": "///A/804", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.153, -0.365, -1.117, -2.078, -1.508, 1.590 ], "step_params": [ -0.825, -1.861, 3.826, -4.013, 4.580, 23.559 ], "heli_params": [ -6.056, 0.522, 3.496, 10.983, 9.624, 24.322 ], "bp2_params": [ -0.197, -0.136, -0.147, -5.710, 5.959, 0.093 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.826, "simple_Twist": 25.547, "simple_hRise": 3.530, "simple_hTwist": 26.251 }, { "index": 2, "nt1": "///A/788", "nt2": "///A/803", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.197, -0.136, -0.147, -5.710, 5.959, 0.093 ], "step_params": [ 0.434, -1.024, 3.212, -1.516, 7.363, 30.181 ], "heli_params": [ -3.242, -1.084, 2.863, 13.872, 2.857, 31.082 ], "bp2_params": [ 0.230, -0.147, 0.152, 3.637, 7.703, 1.816 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.212, "simple_Twist": 27.985, "simple_hRise": 2.829, "simple_hTwist": 28.958 }, { "index": 3, "nt1": "///A/789", "nt2": "///A/802", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.230, -0.147, 0.152, 3.637, 7.703, 1.816 ], "step_params": [ 0.314, -1.549, 3.222, 0.965, 18.235, 36.219 ], "heli_params": [ -4.053, -0.359, 2.230, 27.303, -1.445, 40.423 ], "bp2_params": [ 0.076, -0.108, 0.370, -5.162, 1.514, -2.111 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.222, "simple_Twist": 37.048, "simple_hRise": 2.257, "simple_hTwist": 41.162 }, { "index": 4, "nt1": "///A/790", "nt2": "///A/801", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.076, -0.108, 0.370, -5.162, 1.514, -2.111 ], "step_params": [ 0.004, -1.717, 3.220, -1.228, 1.576, 32.302 ], "heli_params": [ -3.351, -0.219, 3.132, 2.829, 2.205, 32.362 ], "bp2_params": [ 0.205, -0.188, 0.494, -1.533, 7.980, 1.779 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.220, "simple_Twist": 31.418, "simple_hRise": 3.130, "simple_hTwist": 31.480 }, { "index": 5, "nt1": "///A/791", "nt2": "///A/800", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 52, "helix_index": 28, "strand1": "GGU", "strand2": "CCG", "bp_type": "|||", "helix_form": "A.", "helical_rise": 2.296, "helical_rise_std": 0.137, "helical_radius": 9.403, "helical_radius_std": 0.507, "helical_axis": [ 0.930, 0.368, 0.022 ], "point1": [ 194.276, 196.073, 190.231 ], "point2": [ 198.338, 197.681, 190.327 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/824", "nt2": "///A/834", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.198, -0.125, -0.405, -12.037, -5.088, 0.440 ], "step_params": [ -0.563, -1.494, 3.840, -2.066, 1.831, 30.095 ], "heli_params": [ -3.299, 0.592, 3.774, 3.517, 3.968, 30.218 ], "bp2_params": [ 0.211, 0.295, -1.339, -12.980, 0.703, -0.401 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.840, "simple_Twist": 28.082, "simple_hRise": 3.768, "simple_hTwist": 28.215 }, { "index": 2, "nt1": "///A/825", "nt2": "///A/833", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.211, 0.295, -1.339, -12.980, 0.703, -0.401 ], "step_params": [ -0.040, -1.094, 3.053, -2.604, 4.434, 41.132 ], "heli_params": [ -1.980, -0.198, 2.922, 6.282, 3.688, 41.438 ], "bp2_params": [ 2.487, -0.517, -0.436, 1.152, 6.784, -2.139 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.053, "simple_Twist": 28.818, "simple_hRise": 2.849, "simple_hTwist": 29.263 }, { "index": 3, "nt1": "///A/826", "nt2": "///A/832", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 53, "helix_index": 34, "strand1": "CUCUCC", "strand2": "GAGAGG", "bp_type": "||||||", "helix_form": ".AA..", "helical_rise": 3.079, "helical_rise_std": 0.233, "helical_radius": 9.854, "helical_radius_std": 1.275, "helical_axis": [ 0.531, -0.741, -0.411 ], "point1": [ 140.769, 179.013, 162.610 ], "point2": [ 148.903, 167.658, 156.312 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/859", "nt2": "///A/1236", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.167, -0.209, 0.820, 0.062, -1.293, 2.059 ], "step_params": [ -1.183, -2.603, 3.243, 2.159, -2.818, 23.177 ], "heli_params": [ -5.432, 3.659, 3.408, -6.961, -5.332, 23.444 ], "bp2_params": [ -0.048, -0.067, 0.075, 2.372, -1.087, -0.612 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.243, "simple_Twist": 24.521, "simple_hRise": 3.401, "simple_hTwist": 24.773 }, { "index": 2, "nt1": "///A/860", "nt2": "///A/1235", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.048, -0.067, 0.075, 2.372, -1.087, -0.612 ], "step_params": [ 0.140, -1.842, 3.468, -2.085, -6.713, 32.151 ], "heli_params": [ -1.972, -0.644, 3.750, -11.944, 3.709, 32.891 ], "bp2_params": [ 0.208, -0.173, 0.228, 8.847, 6.194, 0.714 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.468, "simple_Twist": 30.484, "simple_hRise": 3.760, "simple_hTwist": 31.265 }, { "index": 3, "nt1": "///A/861", "nt2": "///A/1234", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.208, -0.173, 0.228, 8.847, 6.194, 0.714 ], "step_params": [ -0.368, -2.129, 3.100, 7.622, 1.109, 28.061 ], "heli_params": [ -4.465, 2.273, 2.820, 2.233, -15.356, 29.078 ], "bp2_params": [ -0.297, 0.020, -1.189, 16.952, 8.053, -7.637 ], "groove_widths": [ 16.883, null, 17.484, null ], "simple_Rise": 3.100, "simple_Twist": 30.878, "simple_hRise": 2.854, "simple_hTwist": 31.801 }, { "index": 4, "nt1": "///A/862", "nt2": "///A/1233", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.297, 0.020, -1.189, 16.952, 8.053, -7.637 ], "step_params": [ 0.339, -1.977, 3.835, -3.346, 11.539, 35.202 ], "heli_params": [ -4.765, -1.013, 3.017, 18.428, 5.344, 37.134 ], "bp2_params": [ 0.094, -0.129, -0.461, 3.258, 14.491, 0.164 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.835, "simple_Twist": 33.022, "simple_hRise": 2.953, "simple_hTwist": 35.082 }, { "index": 5, "nt1": "///A/863", "nt2": "///A/1232", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.094, -0.129, -0.461, 3.258, 14.491, 0.164 ], "step_params": [ 0.781, -1.944, 3.173, 4.653, 6.102, 25.632 ], "heli_params": [ -5.668, -0.572, 2.742, 13.376, -10.200, 26.738 ], "bp2_params": [ -0.697, 0.585, -0.876, 8.118, 14.905, -0.095 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.173, "simple_Twist": 29.786, "simple_hRise": 2.816, "simple_hTwist": 30.737 }, { "index": 6, "nt1": "///A/864", "nt2": "///A/1231", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 54, "helix_index": 32, "strand1": "UAGC", "strand2": "AUCG", "bp_type": "||||", "helix_form": ".A.", "helical_rise": 2.431, "helical_rise_std": 0.209, "helical_radius": 9.603, "helical_radius_std": 0.851, "helical_axis": [ 0.986, 0.115, 0.119 ], "point1": [ 167.938, 176.485, 147.921 ], "point2": [ 175.069, 177.315, 148.783 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/869", "nt2": "///A/882", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.040, -0.076, 0.349, 10.470, 5.331, 2.047 ], "step_params": [ -1.359, -1.711, 3.284, 1.335, 12.839, 35.776 ], "heli_params": [ -4.125, 2.244, 2.495, 20.110, -2.091, 37.962 ], "bp2_params": [ 0.050, -0.111, -0.445, -3.642, 7.534, -4.507 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.284, "simple_Twist": 35.304, "simple_hRise": 2.483, "simple_hTwist": 37.519 }, { "index": 2, "nt1": "///A/870", "nt2": "///A/881", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.050, -0.111, -0.445, -3.642, 7.534, -4.507 ], "step_params": [ 0.155, -1.689, 3.103, -1.309, 7.684, 27.128 ], "heli_params": [ -5.039, -0.585, 2.528, 15.967, 2.721, 28.205 ], "bp2_params": [ -0.154, -0.305, -0.777, 4.629, 15.961, -1.832 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.103, "simple_Twist": 28.473, "simple_hRise": 2.560, "simple_hTwist": 29.499 }, { "index": 3, "nt1": "///A/871", "nt2": "///A/880", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.154, -0.305, -0.777, 4.629, 15.961, -1.832 ], "step_params": [ 0.286, -2.021, 3.149, 2.798, 4.603, 34.897 ], "heli_params": [ -3.965, -0.087, 2.881, 7.619, -4.632, 35.298 ], "bp2_params": [ 0.130, -0.386, -1.273, 13.529, 11.625, -1.779 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.149, "simple_Twist": 33.258, "simple_hRise": 2.866, "simple_hTwist": 33.679 }, { "index": 4, "nt1": "///A/872", "nt2": "///A/879", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 55, "helix_index": 32, "strand1": "GC", "strand2": "UG", "bp_type": "||", "helix_form": ".", "helical_rise": 3.049, "helical_rise_std": 0.002, "helical_radius": 8.540, "helical_radius_std": 1.746, "helical_axis": [ -0.862, -0.276, -0.425 ], "point1": [ 162.709, 179.675, 146.095 ], "point2": [ 160.080, 178.832, 144.800 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/883", "nt2": "///A/989", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.793, -0.635, 1.595, 13.402, 16.041, -7.890 ], "step_params": [ 0.665, -1.418, 3.335, 3.135, 7.847, 41.723 ], "heli_params": [ -2.740, -0.603, 3.072, 10.884, -4.348, 42.532 ], "bp2_params": [ 0.225, -0.402, 1.006, 15.055, 6.017, 2.100 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.335, "simple_Twist": 30.790, "simple_hRise": 2.946, "simple_hTwist": 31.901 }, { "index": 2, "nt1": "///A/884", "nt2": "///A/988", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 56, "helix_index": 32, "strand1": "CUCAAGG", "strand2": "GGGUUCC", "bp_type": "|||||||", "helix_form": "..AAA.", "helical_rise": 2.338, "helical_rise_std": 0.254, "helical_radius": 9.201, "helical_radius_std": 0.459, "helical_axis": [ -0.795, -0.413, -0.445 ], "point1": [ 155.656, 179.892, 141.820 ], "point2": [ 144.772, 174.239, 135.722 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///A/885", "nt2": "///A/986", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.184, -0.173, 0.386, 2.013, 5.959, 1.366 ], "step_params": [ 0.166, -1.867, 3.161, 3.155, 2.338, 39.005 ], "heli_params": [ -3.050, 0.111, 3.052, 3.491, -4.710, 39.195 ], "bp2_params": [ 2.271, -0.376, 0.238, 3.167, 6.158, -0.194 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.161, "simple_Twist": 27.682, "simple_hRise": 2.996, "simple_hTwist": 27.953 }, { "index": 2, "nt1": "///A/886", "nt2": "///A/985", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.271, -0.376, 0.238, 3.167, 6.158, -0.194 ], "step_params": [ 0.134, -2.349, 3.036, 12.540, 11.506, 24.608 ], "heli_params": [ -6.462, 1.811, 1.676, 23.713, -25.842, 29.845 ], "bp2_params": [ 0.220, -0.207, -0.554, 0.284, -1.013, 1.051 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.036, "simple_Twist": 35.846, "simple_hRise": 2.141, "simple_hTwist": 39.561 }, { "index": 3, "nt1": "///A/887", "nt2": "///A/984", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.220, -0.207, -0.554, 0.284, -1.013, 1.051 ], "step_params": [ -0.044, -1.450, 3.228, -2.769, 14.694, 28.548 ], "heli_params": [ -4.949, -0.360, 2.228, 27.540, 5.190, 32.155 ], "bp2_params": [ 0.046, -0.113, -0.105, -5.358, 5.966, 0.855 ], "groove_widths": [ 17.709, null, 16.272, null ], "simple_Rise": 3.228, "simple_Twist": 29.590, "simple_hRise": 2.269, "simple_hTwist": 33.078 }, { "index": 4, "nt1": "///A/888", "nt2": "///A/983", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.046, -0.113, -0.105, -5.358, 5.966, 0.855 ], "step_params": [ -0.078, -1.433, 3.036, -0.550, 5.831, 33.661 ], "heli_params": [ -3.263, 0.055, 2.757, 9.975, 0.940, 34.152 ], "bp2_params": [ 0.106, -0.169, -0.032, 2.459, 8.019, 0.034 ], "groove_widths": [ 17.663, null, 16.582, null ], "simple_Rise": 3.036, "simple_Twist": 33.338, "simple_hRise": 2.754, "simple_hTwist": 33.835 }, { "index": 5, "nt1": "///A/889", "nt2": "///A/982", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.106, -0.169, -0.032, 2.459, 8.019, 0.034 ], "step_params": [ 0.629, -1.900, 3.325, 6.922, 8.604, 28.508 ], "heli_params": [ -5.246, 0.123, 2.725, 16.702, -13.436, 30.531 ], "bp2_params": [ -0.167, -0.270, -0.686, -3.194, -0.899, -0.031 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.325, "simple_Twist": 29.965, "simple_hRise": 2.761, "simple_hTwist": 31.892 }, { "index": 6, "nt1": "///A/890", "nt2": "///A/981", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.167, -0.270, -0.686, -3.194, -0.899, -0.031 ], "step_params": [ 0.404, -1.878, 4.362, 16.973, -5.484, 36.901 ], "heli_params": [ -1.842, 2.049, 4.361, -8.109, -25.096, 40.850 ], "bp2_params": [ -0.070, -0.349, -1.278, -13.675, 5.288, -2.824 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.362, "simple_Twist": 36.817, "simple_hRise": 4.360, "simple_hTwist": 40.775 }, { "index": 7, "nt1": "///A/891", "nt2": "///A/980", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 57, "helix_index": 32, "strand1": "GAGUC", "strand2": "UUCAG", "bp_type": "|||||", "helix_form": ".AAA", "helical_rise": 2.505, "helical_rise_std": 0.242, "helical_radius": 9.102, "helical_radius_std": 0.608, "helical_axis": [ 0.906, -0.271, -0.326 ], "point1": [ 145.394, 161.935, 122.505 ], "point2": [ 154.282, 159.279, 119.307 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/895", "nt2": "///A/977", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -3.173, -0.982, -0.653, -6.564, -10.128, -3.982 ], "step_params": [ -0.943, -1.055, 3.730, -3.441, -0.074, 45.434 ], "heli_params": [ -1.355, 0.870, 3.790, -0.096, 4.448, 45.557 ], "bp2_params": [ 0.156, -0.129, -1.149, -12.341, -6.301, -2.346 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.730, "simple_Twist": 26.813, "simple_hRise": 3.821, "simple_hTwist": 27.029 }, { "index": 2, "nt1": "///A/896", "nt2": "///A/976", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.156, -0.129, -1.149, -12.341, -6.301, -2.346 ], "step_params": [ -0.491, -1.404, 2.694, -16.509, 10.416, 29.358 ], "heli_params": [ -3.572, -1.162, 2.080, 18.233, 28.897, 35.136 ], "bp2_params": [ -0.216, -0.166, 0.369, 0.572, 4.951, 2.450 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.694, "simple_Twist": 31.525, "simple_hRise": 2.137, "simple_hTwist": 36.948 }, { "index": 3, "nt1": "///A/897", "nt2": "///A/975", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.216, -0.166, 0.369, 0.572, 4.951, 2.450 ], "step_params": [ -0.372, -1.338, 3.160, 0.764, 4.704, 33.803 ], "heli_params": [ -2.979, 0.747, 2.944, 8.041, -1.306, 34.127 ], "bp2_params": [ -0.129, -0.069, 0.229, 5.466, 6.450, -1.902 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.160, "simple_Twist": 33.047, "simple_hRise": 2.938, "simple_hTwist": 33.380 }, { "index": 4, "nt1": "///A/898", "nt2": "///A/974", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.129, -0.069, 0.229, 5.466, 6.450, -1.902 ], "step_params": [ -0.898, -1.098, 2.827, 3.296, 7.779, 31.521 ], "heli_params": [ -3.053, 2.064, 2.391, 14.007, -5.934, 32.606 ], "bp2_params": [ 0.516, -0.209, -0.220, 14.016, -0.900, 5.047 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.827, "simple_Twist": 28.124, "simple_hRise": 2.328, "simple_hTwist": 29.341 }, { "index": 5, "nt1": "///A/899", "nt2": "///A/973", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 58, "helix_index": 33, "strand1": "UGA", "strand2": "ACU", "bp_type": "|||", "helix_form": "A.", "helical_rise": 3.501, "helical_rise_std": 0.187, "helical_radius": 8.894, "helical_radius_std": 0.520, "helical_axis": [ 0.796, -0.596, 0.105 ], "point1": [ 194.521, 149.290, 116.718 ], "point2": [ 200.287, 144.975, 117.476 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/915", "nt2": "///A/956", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.072, -0.179, -0.832, -10.921, -1.487, 1.087 ], "step_params": [ 0.531, -0.976, 2.955, -3.662, 9.667, 23.114 ], "heli_params": [ -4.575, -2.101, 2.261, 22.725, 8.608, 25.291 ], "bp2_params": [ -0.084, -0.178, 0.363, -4.258, 1.581, -3.109 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.955, "simple_Twist": 23.338, "simple_hRise": 2.269, "simple_hTwist": 25.496 }, { "index": 2, "nt1": "///A/916", "nt2": "///A/955", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.084, -0.178, 0.363, -4.258, 1.581, -3.109 ], "step_params": [ 0.544, -0.891, 2.935, -0.507, 5.172, 43.476 ], "heli_params": [ -1.630, -0.772, 2.810, 6.952, 0.681, 43.771 ], "bp2_params": [ 0.106, -0.187, 0.499, -1.317, -2.972, 1.591 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.935, "simple_Twist": 42.492, "simple_hRise": 2.807, "simple_hTwist": 42.794 }, { "index": 3, "nt1": "///A/917", "nt2": "///A/954", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 59, "helix_index": 33, "strand1": "UG", "strand2": "AC", "bp_type": "||", "helix_form": "A", "helical_rise": 2.373, "helical_rise_std": 0.014, "helical_radius": 8.682, "helical_radius_std": 1.662, "helical_axis": [ 0.974, -0.224, 0.022 ], "point1": [ 205.597, 143.861, 114.178 ], "point2": [ 207.910, 143.329, 114.231 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/919", "nt2": "///A/952", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.111, -0.461, 1.155, 3.816, 6.549, 4.271 ], "step_params": [ 0.689, -1.394, 2.605, 1.785, 7.175, 33.479 ], "heli_params": [ -3.223, -0.957, 2.299, 12.269, -3.052, 34.263 ], "bp2_params": [ -0.119, -0.286, 0.950, 12.064, 2.525, 2.413 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.605, "simple_Twist": 33.752, "simple_hRise": 2.302, "simple_hTwist": 34.530 }, { "index": 2, "nt1": "///A/920", "nt2": "///A/951", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 60, "helix_index": 34, "strand1": "GACUGCG", "strand2": "CUGAUGC", "bp_type": "|||||||", "helix_form": "AAA..A", "helical_rise": 2.694, "helical_rise_std": 0.340, "helical_radius": 9.396, "helical_radius_std": 0.844, "helical_axis": [ 0.820, -0.522, -0.232 ], "point1": [ 165.468, 159.720, 147.910 ], "point2": [ 178.707, 151.289, 144.159 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///A/992", "nt2": "///A/1017", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.140, -0.170, -0.910, -12.193, -1.448, 0.602 ], "step_params": [ -0.326, -1.191, 3.016, -2.633, 4.134, 35.208 ], "heli_params": [ -2.498, 0.186, 2.878, 6.794, 4.328, 35.537 ], "bp2_params": [ 0.119, -0.079, -0.312, -4.752, 2.569, -0.381 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.016, "simple_Twist": 33.896, "simple_hRise": 2.872, "simple_hTwist": 34.239 }, { "index": 2, "nt1": "///A/993", "nt2": "///A/1016", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.119, -0.079, -0.312, -4.752, 2.569, -0.381 ], "step_params": [ 0.454, -1.234, 3.376, -2.212, 3.035, 31.160 ], "heli_params": [ -2.858, -1.259, 3.206, 5.625, 4.100, 31.380 ], "bp2_params": [ 0.185, -0.156, 0.476, 1.203, 2.436, 1.818 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.376, "simple_Twist": 30.624, "simple_hRise": 3.202, "simple_hTwist": 30.848 }, { "index": 3, "nt1": "///A/994", "nt2": "///A/1015", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.185, -0.156, 0.476, 1.203, 2.436, 1.818 ], "step_params": [ 0.099, -1.780, 3.082, 0.244, 4.590, 29.864 ], "heli_params": [ -4.257, -0.146, 2.784, 8.840, -0.471, 30.207 ], "bp2_params": [ 0.008, -0.181, 0.257, 5.823, 3.604, 2.534 ], "groove_widths": [ 17.575, null, 16.837, null ], "simple_Rise": 3.082, "simple_Twist": 30.959, "simple_hRise": 2.796, "simple_hTwist": 31.290 }, { "index": 4, "nt1": "///A/995", "nt2": "///A/1014", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.008, -0.181, 0.257, 5.823, 3.604, 2.534 ], "step_params": [ 0.388, -2.210, 2.802, -2.176, 10.481, 24.475 ], "heli_params": [ -6.751, -1.248, 1.688, 23.347, 4.846, 26.681 ], "bp2_params": [ -2.336, -0.437, 0.356, 3.849, 4.205, 3.060 ], "groove_widths": [ 17.390, null, 16.198, null ], "simple_Rise": 2.802, "simple_Twist": 37.603, "simple_hRise": 2.109, "simple_hTwist": 39.044 }, { "index": 5, "nt1": "///A/996", "nt2": "///A/1013", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.336, -0.437, 0.356, 3.849, 4.205, 3.060 ], "step_params": [ 0.049, -1.520, 3.178, 0.493, 3.233, 41.486 ], "heli_params": [ -2.467, -0.019, 3.057, 4.555, -0.694, 41.609 ], "bp2_params": [ 0.242, -0.185, 0.282, 4.857, 2.999, 1.664 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.178, "simple_Twist": 27.226, "simple_hRise": 2.981, "simple_hTwist": 27.418 }, { "index": 6, "nt1": "///A/997", "nt2": "///A/1012", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.242, -0.185, 0.282, 4.857, 2.999, 1.664 ], "step_params": [ 0.657, -2.179, 2.791, 3.782, 9.671, 36.233 ], "heli_params": [ -4.358, -0.634, 2.213, 15.171, -5.932, 37.644 ], "bp2_params": [ -0.150, -0.196, 0.454, 3.346, 3.264, 0.272 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.791, "simple_Twist": 38.680, "simple_hRise": 2.256, "simple_hTwist": 39.998 }, { "index": 7, "nt1": "///A/998", "nt2": "///A/1011", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 61, "helix_index": 34, "strand1": "GU", "strand2": "UA", "bp_type": "||", "helix_form": "A", "helical_rise": 3.057, "helical_rise_std": 0.031, "helical_radius": 9.388, "helical_radius_std": 0.628, "helical_axis": [ 0.874, -0.479, -0.083 ], "point1": [ 183.927, 149.850, 144.412 ], "point2": [ 186.604, 148.381, 144.156 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1000", "nt2": "///A/1009", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.768, -0.633, 0.156, -2.983, 0.570, -11.627 ], "step_params": [ 0.592, -1.349, 3.084, -2.038, 2.050, 37.673 ], "heli_params": [ -2.328, -1.158, 2.974, 3.168, 3.151, 37.780 ], "bp2_params": [ -0.015, -0.186, 0.467, 0.445, -0.956, 8.943 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.084, "simple_Twist": 33.712, "simple_hRise": 2.959, "simple_hTwist": 33.832 }, { "index": 2, "nt1": "///A/1001", "nt2": "///A/1008", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 62, "helix_index": 35, "strand1": "GGG", "strand2": "CCC", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.245, "helical_rise_std": 0.052, "helical_radius": 8.506, "helical_radius_std": 0.567, "helical_axis": [ 0.307, -0.437, 0.845 ], "point1": [ 158.236, 147.333, 155.053 ], "point2": [ 159.592, 145.400, 158.789 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/1022", "nt2": "///A/1033", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.233, -0.110, -0.292, -4.650, 0.545, -0.070 ], "step_params": [ -0.513, -2.147, 3.111, -0.948, 5.719, 32.982 ], "heli_params": [ -4.575, 0.751, 2.724, 9.977, 1.654, 33.473 ], "bp2_params": [ -0.150, -0.190, -0.382, -0.949, 5.016, -0.150 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.111, "simple_Twist": 33.037, "simple_hRise": 2.725, "simple_hTwist": 33.528 }, { "index": 2, "nt1": "///A/1023", "nt2": "///A/1032", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.150, -0.190, -0.382, -0.949, 5.016, -0.150 ], "step_params": [ 0.690, -2.143, 3.213, -4.058, 10.635, 35.885 ], "heli_params": [ -4.547, -1.536, 2.414, 16.750, 6.390, 37.590 ], "bp2_params": [ -0.150, -0.132, 0.063, -8.027, 17.689, 1.261 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.213, "simple_Twist": 36.167, "simple_hRise": 2.421, "simple_hTwist": 37.859 }, { "index": 3, "nt1": "///A/1024", "nt2": "///A/1031", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 63, "helix_index": 38, "strand1": "CCGC", "strand2": "GGCG", "bp_type": "||||", "helix_form": "AAA", "helical_rise": 2.459, "helical_rise_std": 0.138, "helical_radius": 9.478, "helical_radius_std": 0.622, "helical_axis": [ 0.599, -0.630, 0.494 ], "point1": [ 132.691, 150.413, 151.043 ], "point2": [ 137.079, 145.797, 154.659 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/1037", "nt2": "///A/1209", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.194, -0.175, -0.069, 0.641, -1.308, -0.404 ], "step_params": [ 0.286, -1.871, 3.117, -0.549, 6.697, 30.718 ], "heli_params": [ -4.574, -0.620, 2.654, 12.455, 1.020, 31.427 ], "bp2_params": [ 0.238, -0.187, 0.310, 2.968, 4.674, 0.851 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.117, "simple_Twist": 30.614, "simple_hRise": 2.652, "simple_hTwist": 31.325 }, { "index": 2, "nt1": "///A/1038", "nt2": "///A/1208", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.238, -0.187, 0.310, 2.968, 4.674, 0.851 ], "step_params": [ -0.254, -2.254, 3.295, 7.497, 13.185, 28.609 ], "heli_params": [ -6.052, 1.595, 1.968, 24.618, -13.997, 32.307 ], "bp2_params": [ -0.216, -0.181, -0.395, -4.006, 1.562, -1.276 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.295, "simple_Twist": 30.570, "simple_hRise": 2.061, "simple_hTwist": 34.045 }, { "index": 3, "nt1": "///A/1039", "nt2": "///A/1207", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.216, -0.181, -0.395, -4.006, 1.562, -1.276 ], "step_params": [ 0.507, -1.750, 3.327, 0.185, 4.586, 34.699 ], "heli_params": [ -3.590, -0.816, 3.081, 7.647, -0.309, 34.992 ], "bp2_params": [ 0.230, -0.141, 0.211, 2.409, 5.914, 1.642 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.327, "simple_Twist": 32.597, "simple_hRise": 3.062, "simple_hTwist": 32.910 }, { "index": 4, "nt1": "///A/1040", "nt2": "///A/1206", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 64, "helix_index": 38, "strand1": "AGC", "strand2": "UCG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 3.209, "helical_rise_std": 0.162, "helical_radius": 9.019, "helical_radius_std": 1.685, "helical_axis": [ 0.756, -0.649, 0.081 ], "point1": [ 137.784, 142.651, 154.915 ], "point2": [ 142.614, 138.507, 155.434 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/1042", "nt2": "///A/1205", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.094, -0.221, -0.890, -4.215, 0.322, 1.285 ], "step_params": [ -0.296, -1.795, 3.585, -1.149, 0.296, 30.563 ], "heli_params": [ -3.468, 0.313, 3.576, 0.560, 2.178, 30.585 ], "bp2_params": [ -0.147, -0.185, -0.636, -6.965, 5.588, -0.727 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.585, "simple_Twist": 32.095, "simple_hRise": 3.577, "simple_hTwist": 32.116 }, { "index": 2, "nt1": "///A/1043", "nt2": "///A/1204", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.147, -0.185, -0.636, -6.965, 5.588, -0.727 ], "step_params": [ -0.023, -1.719, 3.258, -0.594, 1.663, 38.141 ], "heli_params": [ -2.835, -0.039, 3.183, 2.544, 0.908, 38.180 ], "bp2_params": [ 0.209, -0.187, -0.131, -0.597, 10.976, -4.001 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.258, "simple_Twist": 36.513, "simple_hRise": 3.180, "simple_hTwist": 36.554 }, { "index": 3, "nt1": "///A/1044", "nt2": "///A/1203", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 65, "helix_index": 38, "strand1": "GGU", "strand2": "CCA", "bp_type": "|||", "helix_form": ".A", "helical_rise": 3.479, "helical_rise_std": 0.061, "helical_radius": 9.671, "helical_radius_std": 0.561, "helical_axis": [ 0.406, -0.913, -0.032 ], "point1": [ 150.251, 129.491, 150.024 ], "point2": [ 153.100, 123.084, 149.799 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/1048", "nt2": "///A/1199", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.168, -0.141, -0.082, -2.456, -3.521, -0.888 ], "step_params": [ 1.261, -2.229, 3.149, 2.418, 1.749, 27.790 ], "heli_params": [ -5.013, -2.061, 3.102, 3.627, -5.017, 27.947 ], "bp2_params": [ -0.205, -0.130, -0.007, -1.785, -1.681, 1.993 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.149, "simple_Twist": 27.946, "simple_hRise": 3.102, "simple_hTwist": 28.102 }, { "index": 2, "nt1": "///A/1049", "nt2": "///A/1198", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.205, -0.130, -0.007, -1.785, -1.681, 1.993 ], "step_params": [ -0.729, -1.528, 3.350, -0.218, 1.340, 37.676 ], "heli_params": [ -2.542, 1.099, 3.300, 2.074, 0.338, 37.699 ], "bp2_params": [ -0.069, -0.102, 0.440, -1.551, -0.949, -3.623 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.350, "simple_Twist": 37.056, "simple_hRise": 3.299, "simple_hTwist": 37.080 }, { "index": 3, "nt1": "///A/1050", "nt2": "///A/1197", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 66, "helix_index": 36, "strand1": "CCC", "strand2": "GGG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 3.370, "helical_rise_std": 0.060, "helical_radius": 9.586, "helical_radius_std": 0.587, "helical_axis": [ -0.576, 0.817, -0.037 ], "point1": [ 162.948, 121.055, 165.020 ], "point2": [ 159.072, 126.549, 164.774 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/1051", "nt2": "///A/1184", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.003, 0.173, -0.104, -4.636, -11.579, -3.409 ], "step_params": [ -0.632, -1.484, 3.584, -1.772, 1.905, 38.334 ], "heli_params": [ -2.513, 0.721, 3.533, 2.897, 2.695, 38.418 ], "bp2_params": [ 0.178, -0.238, -0.618, -4.165, -0.718, 0.759 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.584, "simple_Twist": 32.505, "simple_hRise": 3.522, "simple_hTwist": 32.607 }, { "index": 2, "nt1": "///A/1052", "nt2": "///A/1183", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.178, -0.238, -0.618, -4.165, -0.718, 0.759 ], "step_params": [ 0.286, -1.516, 3.063, -3.173, -1.560, 29.140 ], "heli_params": [ -2.676, -1.209, 3.090, -3.086, 6.277, 29.349 ], "bp2_params": [ 0.127, -0.087, -0.439, 13.086, 4.980, -1.167 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.063, "simple_Twist": 29.206, "simple_hRise": 3.090, "simple_hTwist": 29.415 }, { "index": 3, "nt1": "///A/1053", "nt2": "///A/1182", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 67, "helix_index": 38, "strand1": "AUACGU", "strand2": "UAUGCA", "bp_type": "||||||", "helix_form": "...AA", "helical_rise": 2.125, "helical_rise_std": 0.453, "helical_radius": 9.395, "helical_radius_std": 0.637, "helical_axis": [ 0.439, -0.822, 0.363 ], "point1": [ 158.589, 119.468, 149.088 ], "point2": [ 163.178, 110.887, 152.884 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/1059", "nt2": "///A/1195", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.072, -0.288, 1.250, 4.304, 2.802, -0.499 ], "step_params": [ -0.154, -2.380, 3.169, -1.532, 2.747, 37.421 ], "heli_params": [ -4.035, 0.050, 2.997, 4.272, 2.383, 37.548 ], "bp2_params": [ -0.011, -0.419, 1.173, 3.836, 0.986, -1.482 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.169, "simple_Twist": 38.477, "simple_hRise": 3.002, "simple_hTwist": 38.601 }, { "index": 2, "nt1": "///A/1060", "nt2": "///A/1194", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.011, -0.419, 1.173, 3.836, 0.986, -1.482 ], "step_params": [ -1.245, -1.893, 3.657, 15.505, 31.624, 27.558 ], "heli_params": [ -4.886, 2.814, 0.556, 47.693, -23.383, 44.450 ], "bp2_params": [ 0.238, -0.432, -1.599, -13.208, -2.205, -3.348 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.657, "simple_Twist": 25.669, "simple_hRise": 0.404, "simple_hTwist": 43.341 }, { "index": 3, "nt1": "///A/1061", "nt2": "///A/1193", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.238, -0.432, -1.599, -13.208, -2.205, -3.348 ], "step_params": [ -0.482, -1.333, 2.966, -5.718, 6.226, 25.262 ], "heli_params": [ -4.326, -0.267, 2.613, 13.753, 12.630, 26.617 ], "bp2_params": [ 0.200, -0.387, -1.176, -0.385, -1.844, 4.288 ], "groove_widths": [ 18.400, null, 17.645, null ], "simple_Rise": 2.966, "simple_Twist": 25.622, "simple_hRise": 2.619, "simple_hTwist": 26.958 }, { "index": 4, "nt1": "///A/1062", "nt2": "///A/1192", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.200, -0.387, -1.176, -0.385, -1.844, 4.288 ], "step_params": [ 0.080, -1.334, 3.677, -6.097, 11.866, 26.013 ], "heli_params": [ -5.334, -1.539, 2.735, 24.423, 12.548, 29.182 ], "bp2_params": [ -0.106, -0.255, -0.776, 2.648, -1.563, 1.600 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.677, "simple_Twist": 28.166, "simple_hRise": 2.823, "simple_hTwist": 31.108 }, { "index": 5, "nt1": "///A/1063", "nt2": "///A/1191", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.106, -0.255, -0.776, 2.648, -1.563, 1.600 ], "step_params": [ -0.040, -1.488, 2.927, 3.199, 2.496, 33.953 ], "heli_params": [ -2.878, 0.511, 2.798, 4.255, -5.454, 34.187 ], "bp2_params": [ -0.103, -0.238, -1.215, 9.959, -6.716, -0.474 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.927, "simple_Twist": 33.776, "simple_hRise": 2.798, "simple_hTwist": 34.012 }, { "index": 6, "nt1": "///A/1064", "nt2": "///A/1190", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 68, "helix_index": 37, "strand1": "GG", "strand2": "CC", "bp_type": "||", "helix_form": "A", "helical_rise": 2.586, "helical_rise_std": 0.008, "helical_radius": 9.225, "helical_radius_std": 0.406, "helical_axis": [ 0.183, -0.647, -0.740 ], "point1": [ 187.437, 122.113, 151.761 ], "point2": [ 187.911, 120.439, 149.847 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1076", "nt2": "///A/1170", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.212, -0.205, 0.270, 3.704, 4.198, 1.778 ], "step_params": [ 0.326, -2.022, 3.465, 8.603, 12.536, 36.136 ], "heli_params": [ -4.491, 0.522, 2.654, 19.198, -13.175, 39.105 ], "bp2_params": [ -0.225, -0.219, -0.857, -12.034, -9.330, 4.076 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.465, "simple_Twist": 36.213, "simple_hRise": 2.656, "simple_hTwist": 39.176 }, { "index": 2, "nt1": "///A/1077", "nt2": "///A/1169", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 69, "helix_index": 37, "strand1": "GG", "strand2": "UC", "bp_type": "||", "helix_form": ".", "helical_rise": 2.965, "helical_rise_std": 0.032, "helical_radius": 12.083, "helical_radius_std": 1.225, "helical_axis": [ -0.281, -0.683, -0.675 ], "point1": [ 190.119, 108.152, 141.383 ], "point2": [ 189.286, 106.129, 139.385 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1082", "nt2": "///A/1165", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -3.212, -1.179, -1.678, -20.542, -5.214, -18.544 ], "step_params": [ -0.065, -1.002, 3.167, -6.050, 5.160, 33.365 ], "heli_params": [ -2.470, -0.791, 2.950, 8.831, 10.355, 34.274 ], "bp2_params": [ -0.089, -0.431, -1.488, -10.962, 0.952, 0.083 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.167, "simple_Twist": 16.938, "simple_hRise": 2.617, "simple_hTwist": 18.699 }, { "index": 2, "nt1": "///A/1083", "nt2": "///A/1164", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 70, "helix_index": 37, "strand1": "GC", "strand2": "UG", "bp_type": "||", "helix_form": ".", "helical_rise": 3.447, "helical_rise_std": 0.045, "helical_radius": 9.742, "helical_radius_std": 0.554, "helical_axis": [ -0.038, -0.940, -0.339 ], "point1": [ 186.029, 95.009, 133.616 ], "point2": [ 185.899, 91.773, 132.450 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1088", "nt2": "///A/1159", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.859, -1.195, -1.819, -24.299, -13.864, -5.179 ], "step_params": [ -0.429, -0.975, 3.340, -9.539, 1.221, 29.021 ], "heli_params": [ -2.102, -1.152, 3.271, 2.357, 18.408, 30.540 ], "bp2_params": [ 0.137, -0.639, -1.515, -13.209, 0.538, 1.106 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.340, "simple_Twist": 23.920, "simple_hRise": 3.217, "simple_hTwist": 25.755 }, { "index": 2, "nt1": "///A/1089", "nt2": "///A/1158", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 71, "helix_index": 38, "strand1": "ACUGUUC", "strand2": "UGACAAG", "bp_type": "|||||||", "helix_form": ".AAAA.", "helical_rise": 2.844, "helical_rise_std": 0.183, "helical_radius": 9.001, "helical_radius_std": 0.683, "helical_axis": [ -0.523, 0.690, -0.500 ], "point1": [ 133.176, 153.963, 149.859 ], "point2": [ 124.211, 165.791, 141.299 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///A/1210", "nt2": "///A/1226", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.134, 0.222, 0.216, -1.063, -0.042, 3.650 ], "step_params": [ 0.138, -1.860, 3.091, -1.346, 2.397, 26.898 ], "heli_params": [ -4.539, -0.610, 2.907, 5.135, 2.884, 27.035 ], "bp2_params": [ 0.189, -0.146, 0.432, 3.445, -0.137, 2.410 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.091, "simple_Twist": 31.894, "simple_hRise": 2.939, "simple_hTwist": 32.009 }, { "index": 2, "nt1": "///A/1211", "nt2": "///A/1225", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.189, -0.146, 0.432, 3.445, -0.137, 2.410 ], "step_params": [ -0.203, -1.598, 3.338, 1.662, 0.606, 31.645 ], "heli_params": [ -3.040, 0.682, 3.293, 1.111, -3.044, 31.693 ], "bp2_params": [ -0.092, -0.087, 0.497, 2.140, -3.875, 1.496 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.338, "simple_Twist": 33.251, "simple_hRise": 3.296, "simple_hTwist": 33.297 }, { "index": 3, "nt1": "///A/1212", "nt2": "///A/1224", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.092, -0.087, 0.497, 2.140, -3.875, 1.496 ], "step_params": [ -0.026, -1.671, 2.777, 1.556, 8.508, 27.901 ], "heli_params": [ -4.752, 0.314, 2.178, 17.131, -3.133, 29.185 ], "bp2_params": [ -0.205, -0.131, -0.116, 4.458, 6.456, 2.066 ], "groove_widths": [ 16.869, null, 15.756, null ], "simple_Rise": 2.777, "simple_Twist": 28.627, "simple_hRise": 2.196, "simple_hTwist": 29.879 }, { "index": 4, "nt1": "///A/1213", "nt2": "///A/1223", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.205, -0.131, -0.116, 4.458, 6.456, 2.066 ], "step_params": [ -0.428, -1.875, 3.294, 3.359, 5.700, 40.763 ], "heli_params": [ -3.251, 0.956, 2.974, 8.119, -4.783, 41.274 ], "bp2_params": [ -0.052, -0.182, -0.589, 2.617, 11.171, -12.293 ], "groove_widths": [ 17.280, null, 14.760, null ], "simple_Rise": 3.294, "simple_Twist": 40.227, "simple_hRise": 2.969, "simple_hTwist": 40.745 }, { "index": 5, "nt1": "///A/1214", "nt2": "///A/1222", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.052, -0.182, -0.589, 2.617, 11.171, -12.293 ], "step_params": [ 0.060, -1.147, 2.820, 2.580, 8.595, 30.507 ], "heli_params": [ -3.382, 0.277, 2.413, 15.907, -4.775, 31.769 ], "bp2_params": [ -0.090, -0.307, -0.984, 15.714, 9.257, -5.466 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.820, "simple_Twist": 30.266, "simple_hRise": 2.409, "simple_hTwist": 31.539 }, { "index": 6, "nt1": "///A/1215", "nt2": "///A/1221", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.090, -0.307, -0.984, 15.714, 9.257, -5.466 ], "step_params": [ 1.369, -0.660, 2.940, 10.184, 14.849, 30.602 ], "heli_params": [ -3.107, -0.865, 2.666, 25.548, -17.523, 35.397 ], "bp2_params": [ -0.153, -0.329, -1.438, 22.501, -11.293, 10.070 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.940, "simple_Twist": 31.801, "simple_hRise": 2.687, "simple_hTwist": 36.430 }, { "index": 7, "nt1": "///A/1216", "nt2": "///A/1220", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 72, "helix_index": 34, "strand1": "UUCUA", "strand2": "AAGAU", "bp_type": "|||||", "helix_form": ".AAA", "helical_rise": 2.867, "helical_rise_std": 0.277, "helical_radius": 9.439, "helical_radius_std": 0.386, "helical_axis": [ -0.874, 0.237, 0.425 ], "point1": [ 134.925, 185.311, 168.828 ], "point2": [ 124.781, 188.068, 173.761 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/1239", "nt2": "///A/1287", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.089, -0.030, 0.160, 3.569, -2.115, 0.155 ], "step_params": [ -0.218, -1.690, 3.353, -3.337, 9.030, 31.250 ], "heli_params": [ -4.507, -0.168, 2.777, 16.286, 6.018, 32.664 ], "bp2_params": [ -0.079, -0.233, 0.914, 5.278, 5.959, 2.733 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.353, "simple_Twist": 31.204, "simple_hRise": 2.776, "simple_hTwist": 32.620 }, { "index": 2, "nt1": "///A/1240", "nt2": "///A/1286", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.079, -0.233, 0.914, 5.278, 5.959, 2.733 ], "step_params": [ 0.351, -1.922, 3.002, 2.358, 12.807, 36.172 ], "heli_params": [ -4.247, -0.291, 2.237, 19.852, -3.655, 38.371 ], "bp2_params": [ 0.183, -0.245, 0.835, 2.629, -1.829, 2.665 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.002, "simple_Twist": 34.724, "simple_hRise": 2.200, "simple_hTwist": 37.015 }, { "index": 3, "nt1": "///A/1241", "nt2": "///A/1285", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.183, -0.245, 0.835, 2.629, -1.829, 2.665 ], "step_params": [ -0.444, -2.074, 3.104, 2.742, 0.465, 31.592 ], "heli_params": [ -3.876, 1.286, 3.025, 0.852, -5.025, 31.711 ], "bp2_params": [ -0.036, -0.136, 0.431, 0.534, -4.398, -1.497 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.104, "simple_Twist": 33.082, "simple_hRise": 3.029, "simple_hTwist": 33.196 }, { "index": 4, "nt1": "///A/1242", "nt2": "///A/1284", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.036, -0.136, 0.431, 0.534, -4.398, -1.497 ], "step_params": [ -0.240, -1.839, 2.736, -4.176, 11.496, 30.923 ], "heli_params": [ -4.656, -0.102, 1.961, 20.580, 7.475, 33.199 ], "bp2_params": [ 0.048, -0.162, 0.519, 5.328, 13.211, 3.005 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.736, "simple_Twist": 30.246, "simple_hRise": 1.942, "simple_hTwist": 32.572 }, { "index": 5, "nt1": "///A/1243", "nt2": "///A/1283", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 73, "helix_index": 34, "strand1": "GC", "strand2": "CG", "bp_type": "||", "helix_form": ".", "helical_rise": 3.508, "helical_rise_std": 0.025, "helical_radius": 11.184, "helical_radius_std": 0.684, "helical_axis": [ -0.560, -0.243, 0.792 ], "point1": [ 117.131, 191.300, 183.588 ], "point2": [ 115.167, 190.449, 186.365 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1247", "nt2": "///A/1279", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.182, -0.187, -0.360, 6.361, 15.807, -2.237 ], "step_params": [ -0.399, -2.153, 3.277, -1.971, 1.535, 29.353 ], "heli_params": [ -4.559, 0.368, 3.182, 3.022, 3.880, 29.456 ], "bp2_params": [ 0.062, -0.167, -0.664, 11.652, 13.809, -2.574 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.277, "simple_Twist": 27.528, "simple_hRise": 3.175, "simple_hTwist": 27.639 }, { "index": 2, "nt1": "///A/1248", "nt2": "///A/1278", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 74, "helix_index": 39, "strand1": "GCCAG", "strand2": "UGGUC", "bp_type": "|||||", "helix_form": "AAAA", "helical_rise": 2.608, "helical_rise_std": 0.184, "helical_radius": 9.043, "helical_radius_std": 0.399, "helical_axis": [ 0.520, -0.584, -0.623 ], "point1": [ 122.003, 173.466, 191.448 ], "point2": [ 127.411, 167.386, 184.967 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/1255", "nt2": "///A/1274", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.278, -0.568, 0.033, 2.149, 9.833, -3.984 ], "step_params": [ 0.611, -1.955, 3.244, 2.366, 3.340, 37.388 ], "heli_params": [ -3.456, -0.648, 3.096, 5.191, -3.677, 37.603 ], "bp2_params": [ 0.201, -0.142, -0.107, 3.023, 4.119, 2.066 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.244, "simple_Twist": 29.137, "simple_hRise": 3.045, "simple_hTwist": 29.417 }, { "index": 2, "nt1": "///A/1256", "nt2": "///A/1273", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.201, -0.142, -0.107, 3.023, 4.119, 2.066 ], "step_params": [ 0.258, -1.884, 3.225, 3.011, 9.276, 33.648 ], "heli_params": [ -4.412, -0.013, 2.641, 15.621, -5.071, 34.993 ], "bp2_params": [ 0.187, -0.158, 0.188, 1.082, 4.456, 0.472 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.225, "simple_Twist": 33.746, "simple_hRise": 2.643, "simple_hTwist": 35.087 }, { "index": 3, "nt1": "///A/1257", "nt2": "///A/1272", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.187, -0.158, 0.188, 1.082, 4.456, 0.472 ], "step_params": [ 0.442, -2.143, 2.996, 2.465, 10.288, 28.384 ], "heli_params": [ -5.795, -0.441, 2.137, 20.118, -4.820, 30.253 ], "bp2_params": [ -0.011, -0.095, 0.458, 1.584, 8.850, -0.732 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.996, "simple_Twist": 29.320, "simple_hRise": 2.168, "simple_hTwist": 31.131 }, { "index": 4, "nt1": "///A/1258", "nt2": "///A/1271", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.011, -0.095, 0.458, 1.584, 8.850, -0.732 ], "step_params": [ 0.695, -1.616, 3.059, 3.462, 6.910, 30.180 ], "heli_params": [ -4.191, -0.704, 2.693, 13.005, -6.516, 31.132 ], "bp2_params": [ -0.162, -0.170, 0.211, 7.800, 4.419, -0.355 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.059, "simple_Twist": 31.468, "simple_hRise": 2.711, "simple_hTwist": 32.380 }, { "index": 5, "nt1": "///A/1259", "nt2": "///A/1270", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 75, "helix_index": 39, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.249, "helical_rise_std": 0.018, "helical_radius": 9.550, "helical_radius_std": 0.525, "helical_axis": [ 0.339, -0.491, -0.803 ], "point1": [ 129.963, 164.364, 179.581 ], "point2": [ 131.063, 162.769, 176.975 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1261", "nt2": "///A/1268", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.220, -0.139, 0.095, 1.320, 1.259, -0.679 ], "step_params": [ -0.220, -2.193, 3.295, -1.058, 1.007, 33.444 ], "heli_params": [ -3.973, 0.208, 3.234, 1.749, 1.838, 33.475 ], "bp2_params": [ 0.165, -0.229, 0.521, 1.266, 0.980, -1.513 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.295, "simple_Twist": 33.736, "simple_hRise": 3.235, "simple_hTwist": 33.767 }, { "index": 2, "nt1": "///A/1262", "nt2": "///A/1267", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 76, "helix_index": 40, "strand1": "GC", "strand2": "UG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.228, "helical_rise_std": 0.007, "helical_radius": 9.776, "helical_radius_std": 0.551, "helical_axis": [ 0.607, -0.088, 0.790 ], "point1": [ 165.673, 158.083, 217.298 ], "point2": [ 167.631, 157.799, 219.848 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1309", "nt2": "///A/2040", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.879, -0.367, 0.391, 1.389, 3.504, -2.880 ], "step_params": [ 0.277, -1.743, 3.358, 0.644, 3.706, 40.364 ], "heli_params": [ -2.932, -0.328, 3.196, 5.357, -0.931, 40.531 ], "bp2_params": [ 0.171, -0.102, 0.331, 2.278, 2.110, 0.807 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.358, "simple_Twist": 29.110, "simple_hRise": 3.122, "simple_hTwist": 29.347 }, { "index": 2, "nt1": "///A/1310", "nt2": "///A/2039", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 77, "helix_index": 44, "strand1": "GAGGGG", "strand2": "CUCCCC", "bp_type": "||||||", "helix_form": "AAAAA", "helical_rise": 2.709, "helical_rise_std": 0.195, "helical_radius": 9.161, "helical_radius_std": 0.657, "helical_axis": [ -0.932, -0.322, -0.165 ], "point1": [ 175.291, 170.916, 245.755 ], "point2": [ 162.749, 166.587, 243.533 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/1315", "nt2": "///A/1333", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.174, -0.178, 0.591, -4.468, 5.415, 1.079 ], "step_params": [ -0.223, -1.889, 3.195, -1.214, 2.784, 30.113 ], "heli_params": [ -4.155, 0.193, 3.019, 5.341, 2.329, 30.263 ], "bp2_params": [ 0.059, -0.206, 0.869, -2.965, 7.890, 1.879 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.195, "simple_Twist": 28.612, "simple_hRise": 3.009, "simple_hTwist": 28.770 }, { "index": 2, "nt1": "///A/1316", "nt2": "///A/1332", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.059, -0.206, 0.869, -2.965, 7.890, 1.879 ], "step_params": [ 0.313, -1.782, 3.114, -0.549, 5.627, 29.442 ], "heli_params": [ -4.492, -0.707, 2.728, 10.944, 1.067, 29.968 ], "bp2_params": [ -0.201, -0.284, 0.941, 1.953, 6.536, 2.693 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.114, "simple_Twist": 30.823, "simple_hRise": 2.748, "simple_hTwist": 31.324 }, { "index": 3, "nt1": "///A/1317", "nt2": "///A/1331", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.201, -0.284, 0.941, 1.953, 6.536, 2.693 ], "step_params": [ -0.151, -1.865, 3.076, 0.009, 3.028, 33.881 ], "heli_params": [ -3.631, 0.259, 2.904, 5.183, -0.015, 34.012 ], "bp2_params": [ -0.185, -0.253, 0.774, 2.773, 4.963, 0.910 ], "groove_widths": [ 17.483, null, 15.512, null ], "simple_Rise": 3.076, "simple_Twist": 33.811, "simple_hRise": 2.903, "simple_hTwist": 33.942 }, { "index": 4, "nt1": "///A/1318", "nt2": "///A/1330", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.185, -0.253, 0.774, 2.773, 4.963, 0.910 ], "step_params": [ 0.079, -1.971, 3.535, 8.001, 8.230, 33.976 ], "heli_params": [ -4.410, 1.042, 2.937, 13.610, -13.232, 35.808 ], "bp2_params": [ -0.201, -0.176, -0.279, -9.739, -6.342, -1.062 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.535, "simple_Twist": 33.694, "simple_hRise": 2.931, "simple_hTwist": 35.541 }, { "index": 5, "nt1": "///A/1319", "nt2": "///A/1329", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.201, -0.176, -0.279, -9.739, -6.342, -1.062 ], "step_params": [ 0.556, -1.758, 3.334, 4.982, 9.376, 36.485 ], "heli_params": [ -3.862, -0.240, 2.861, 14.599, -7.758, 37.948 ], "bp2_params": [ -0.181, -0.174, -0.770, -12.345, -6.294, 1.045 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.334, "simple_Twist": 36.616, "simple_hRise": 2.863, "simple_hTwist": 38.074 }, { "index": 6, "nt1": "///A/1320", "nt2": "///A/1328", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 78, "helix_index": 44, "strand1": "CACC", "strand2": "GUGG", "bp_type": "||||", "helix_form": "..A", "helical_rise": 2.909, "helical_rise_std": 0.186, "helical_radius": 9.754, "helical_radius_std": 0.367, "helical_axis": [ 0.994, 0.111, -0.004 ], "point1": [ 179.307, 173.777, 247.588 ], "point2": [ 187.772, 174.721, 247.555 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/1334", "nt2": "///A/1690", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.127, 0.079, 0.940, -3.146, -20.260, 9.089 ], "step_params": [ -1.023, -1.623, 3.899, -0.621, 2.729, 30.977 ], "heli_params": [ -3.640, 1.769, 3.765, 5.096, 1.160, 31.100 ], "bp2_params": [ 0.064, -0.154, -1.078, -12.301, -9.948, 1.757 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.899, "simple_Twist": 31.253, "simple_hRise": 3.766, "simple_hTwist": 31.375 }, { "index": 2, "nt1": "///A/1335", "nt2": "///A/1689", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.064, -0.154, -1.078, -12.301, -9.948, 1.757 ], "step_params": [ -0.977, -1.339, 3.629, -5.122, -0.426, 31.132 ], "heli_params": [ -2.374, 0.715, 3.756, -0.788, 9.462, 31.543 ], "bp2_params": [ 0.169, -0.335, -1.099, -7.564, -1.836, 2.007 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.629, "simple_Twist": 30.763, "simple_hRise": 3.757, "simple_hTwist": 31.179 }, { "index": 3, "nt1": "///A/1336", "nt2": "///A/1688", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.169, -0.335, -1.099, -7.564, -1.836, 2.007 ], "step_params": [ -0.527, -1.521, 3.523, -7.973, 5.324, 27.971 ], "heli_params": [ -4.182, -0.760, 3.211, 10.626, 15.915, 29.537 ], "bp2_params": [ 0.158, -0.126, -0.029, -3.432, 8.011, 0.521 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.523, "simple_Twist": 28.030, "simple_hRise": 3.212, "simple_hTwist": 29.593 }, { "index": 4, "nt1": "///A/1337", "nt2": "///A/1687", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 79, "helix_index": 41, "strand1": "GCC", "strand2": "CGG", "bp_type": "|||", "helix_form": "A.", "helical_rise": 2.349, "helical_rise_std": 0.084, "helical_radius": 9.473, "helical_radius_std": 1.113, "helical_axis": [ -0.940, 0.194, -0.281 ], "point1": [ 193.238, 189.201, 233.767 ], "point2": [ 188.803, 190.115, 232.443 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/1342", "nt2": "///A/1670", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.221, -0.179, 0.444, 5.063, 15.580, 0.101 ], "step_params": [ -0.505, -2.481, 3.026, 1.597, 9.859, 31.883 ], "heli_params": [ -5.648, 1.095, 2.157, 17.421, -2.821, 33.372 ], "bp2_params": [ 0.206, -0.168, -0.081, 12.972, 18.476, 4.003 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.026, "simple_Twist": 28.983, "simple_hRise": 2.060, "simple_hTwist": 30.621 }, { "index": 2, "nt1": "///A/1343", "nt2": "///A/1669", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.206, -0.168, -0.081, 12.972, 18.476, 4.003 ], "step_params": [ -0.417, -1.721, 2.922, 9.321, 8.367, 32.855 ], "heli_params": [ -3.877, 1.830, 2.234, 14.167, -15.784, 35.100 ], "bp2_params": [ -0.132, -0.244, -1.399, 27.174, 14.028, -7.931 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.922, "simple_Twist": 34.426, "simple_hRise": 2.272, "simple_hTwist": 36.569 }, { "index": 3, "nt1": "///A/1344", "nt2": "///A/1668", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 80, "helix_index": 42, "strand1": "GG", "strand2": "CC", "bp_type": "||", "helix_form": "A", "helical_rise": 3.025, "helical_rise_std": 0.021, "helical_radius": 9.810, "helical_radius_std": 1.031, "helical_axis": [ -0.822, 0.416, -0.390 ], "point1": [ 179.605, 202.222, 230.882 ], "point2": [ 177.120, 203.479, 229.703 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1348", "nt2": "///A/1650", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.102, -0.221, -1.129, -11.120, 2.545, -0.852 ], "step_params": [ 0.720, -1.379, 3.615, -2.011, 9.614, 26.730 ], "heli_params": [ -5.071, -1.938, 2.893, 19.960, 4.175, 28.447 ], "bp2_params": [ -0.144, -0.198, -0.804, -3.978, -0.601, -0.528 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.615, "simple_Twist": 26.959, "simple_hRise": 2.901, "simple_hTwist": 28.661 }, { "index": 2, "nt1": "///A/1349", "nt2": "///A/1649", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 81, "helix_index": 43, "strand1": "CCUGAG", "strand2": "GGACUC", "bp_type": "||||||", "helix_form": "AAAAA", "helical_rise": 2.317, "helical_rise_std": 0.269, "helical_radius": 8.794, "helical_radius_std": 0.855, "helical_axis": [ -0.038, -0.974, 0.225 ], "point1": [ 160.171, 195.988, 233.544 ], "point2": [ 159.746, 184.960, 236.095 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/1353", "nt2": "///A/1377", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.092, -0.133, -0.219, 0.739, -5.108, 0.434 ], "step_params": [ -0.781, -2.311, 3.611, -7.264, 1.424, 34.475 ], "heli_params": [ -4.053, 0.086, 3.601, 2.370, 12.083, 35.237 ], "bp2_params": [ 0.145, -0.147, -0.086, -5.783, 1.646, -2.031 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.611, "simple_Twist": 34.821, "simple_hRise": 3.602, "simple_hTwist": 35.575 }, { "index": 2, "nt1": "///A/1354", "nt2": "///A/1376", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.145, -0.147, -0.086, -5.783, 1.646, -2.031 ], "step_params": [ -0.374, -1.358, 3.107, -3.480, 3.778, 33.204 ], "heli_params": [ -2.927, 0.115, 2.962, 6.562, 6.045, 33.588 ], "bp2_params": [ -0.071, -0.149, 0.339, 0.029, 1.078, -2.711 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.107, "simple_Twist": 34.493, "simple_hRise": 2.969, "simple_hTwist": 34.862 }, { "index": 3, "nt1": "///A/1355", "nt2": "///A/1375", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.071, -0.149, 0.339, 0.029, 1.078, -2.711 ], "step_params": [ -0.269, -1.603, 3.184, 2.956, 21.054, 30.724 ], "heli_params": [ -4.838, 0.747, 1.737, 34.974, -4.910, 37.217 ], "bp2_params": [ -0.154, -0.177, -0.494, -6.636, -3.997, -0.757 ], "groove_widths": [ 17.616, null, 14.690, null ], "simple_Rise": 3.184, "simple_Twist": 31.211, "simple_hRise": 1.761, "simple_hTwist": 37.615 }, { "index": 4, "nt1": "///A/1356", "nt2": "///A/1374", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.154, -0.177, -0.494, -6.636, -3.997, -0.757 ], "step_params": [ -0.321, -1.696, 3.119, -4.910, 1.593, 29.739 ], "heli_params": [ -3.565, -0.331, 3.038, 3.075, 9.476, 30.174 ], "bp2_params": [ 0.054, -0.091, -0.092, -3.351, -3.942, -4.463 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.119, "simple_Twist": 28.275, "simple_hRise": 3.031, "simple_hTwist": 28.733 }, { "index": 5, "nt1": "///A/1357", "nt2": "///A/1373", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.054, -0.091, -0.092, -3.351, -3.942, -4.463 ], "step_params": [ 0.299, -1.942, 3.011, 5.040, 6.313, 37.124 ], "heli_params": [ -3.694, 0.106, 2.674, 9.773, -7.803, 37.963 ], "bp2_params": [ -0.132, -0.223, -0.789, 5.410, 6.373, -1.152 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.011, "simple_Twist": 38.732, "simple_hRise": 2.691, "simple_hTwist": 39.534 }, { "index": 6, "nt1": "///A/1358", "nt2": "///A/1372", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 82, "helix_index": 43, "strand1": "GG", "strand2": "CC", "bp_type": "||", "helix_form": ".", "helical_rise": 2.023, "helical_rise_std": 0.076, "helical_radius": 9.289, "helical_radius_std": 1.908, "helical_axis": [ 0.196, -0.900, -0.390 ], "point1": [ 155.726, 179.298, 227.808 ], "point2": [ 156.120, 177.488, 227.024 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1362", "nt2": "///A/1370", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.129, 0.383, -0.192, -8.044, -12.654, -5.247 ], "step_params": [ 0.702, -1.682, 3.136, 1.522, 6.694, 21.699 ], "heli_params": [ -6.409, -1.291, 2.551, 17.235, -3.919, 22.747 ], "bp2_params": [ -0.165, -0.270, -0.793, 0.036, -1.528, 0.749 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.136, "simple_Twist": 28.858, "simple_hRise": 2.718, "simple_hTwist": 29.647 }, { "index": 2, "nt1": "///A/1363", "nt2": "///A/1369", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 83, "helix_index": 48, "strand1": "GU", "strand2": "CA", "bp_type": "||", "helix_form": ".", "helical_rise": 2.946, "helical_rise_std": 0.027, "helical_radius": 8.885, "helical_radius_std": 1.790, "helical_axis": [ -0.395, -0.912, -0.108 ], "point1": [ 183.712, 221.584, 253.825 ], "point2": [ 182.549, 218.900, 253.506 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1382", "nt2": "///A/1443", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.227, -0.173, 0.463, -0.848, 7.336, 0.729 ], "step_params": [ -0.876, -1.444, 3.116, 1.692, 5.000, 39.793 ], "heli_params": [ -2.629, 1.454, 2.883, 7.307, -2.473, 40.128 ], "bp2_params": [ -0.185, 0.724, 0.299, 5.828, 11.816, -1.368 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.116, "simple_Twist": 39.841, "simple_hRise": 2.883, "simple_hTwist": 40.175 }, { "index": 2, "nt1": "///A/1383", "nt2": "///A/1442", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 84, "helix_index": 45, "strand1": "CGGG", "strand2": "GCCC", "bp_type": "||||", "helix_form": "AAA", "helical_rise": 1.687, "helical_rise_std": 0.181, "helical_radius": 8.283, "helical_radius_std": 0.508, "helical_axis": [ 0.842, 0.501, -0.202 ], "point1": [ 178.064, 216.231, 239.376 ], "point2": [ 182.153, 218.664, 238.394 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/1384", "nt2": "///A/1646", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.114, -0.133, -0.104, -0.036, -5.081, -1.130 ], "step_params": [ -0.728, -1.847, 2.797, -12.783, 7.652, 32.421 ], "heli_params": [ -3.955, -0.369, 2.422, 12.890, 21.534, 35.597 ], "bp2_params": [ -0.285, -0.219, 0.548, 6.630, 10.854, 4.172 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.797, "simple_Twist": 35.088, "simple_hRise": 2.465, "simple_hTwist": 38.029 }, { "index": 2, "nt1": "///A/1385", "nt2": "///A/1645", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.285, -0.219, 0.548, 6.630, 10.854, 4.172 ], "step_params": [ -0.012, -2.106, 3.477, 10.512, 12.328, 34.042 ], "heli_params": [ -4.810, 1.334, 2.485, 19.732, -16.825, 37.597 ], "bp2_params": [ -0.158, -0.256, -0.998, -4.779, -1.040, 0.772 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.477, "simple_Twist": 33.569, "simple_hRise": 2.468, "simple_hTwist": 37.173 }, { "index": 3, "nt1": "///A/1386", "nt2": "///A/1644", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.158, -0.256, -0.998, -4.779, -1.040, 0.772 ], "step_params": [ 0.124, -2.083, 3.254, -6.735, 11.279, 31.047 ], "heli_params": [ -5.229, -1.188, 2.304, 19.987, 11.935, 33.648 ], "bp2_params": [ -0.127, -0.154, -0.340, -9.033, 19.968, -1.046 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.254, "simple_Twist": 31.295, "simple_hRise": 2.312, "simple_hTwist": 33.877 }, { "index": 4, "nt1": "///A/1387", "nt2": "///A/1643", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 85, "helix_index": 46, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": "A", "helical_rise": 2.398, "helical_rise_std": 0.011, "helical_radius": 9.603, "helical_radius_std": 2.328, "helical_axis": [ -0.269, 0.323, -0.907 ], "point1": [ 190.178, 215.755, 230.135 ], "point2": [ 189.533, 216.528, 227.960 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1389", "nt2": "///A/1420", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.235, -0.134, 0.024, 0.576, 17.508, 3.392 ], "step_params": [ -0.339, -2.754, 3.302, 5.102, 12.900, 35.181 ], "heli_params": [ -5.696, 1.093, 2.130, 20.391, -8.064, 37.736 ], "bp2_params": [ 0.270, -0.209, 0.124, -7.299, 12.367, -11.104 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.302, "simple_Twist": 35.533, "simple_hRise": 2.143, "simple_hTwist": 38.064 }, { "index": 2, "nt1": "///A/1390", "nt2": "///A/1419", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 86, "helix_index": 46, "strand1": "GCC", "strand2": "CGG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 3.597, "helical_rise_std": 0.235, "helical_radius": 9.515, "helical_radius_std": 0.601, "helical_axis": [ -0.162, 0.587, -0.793 ], "point1": [ 195.137, 222.878, 215.042 ], "point2": [ 193.949, 227.173, 209.238 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/1394", "nt2": "///A/1415", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.205, -0.201, -0.488, -2.318, -3.624, 0.421 ], "step_params": [ 0.128, -1.504, 3.384, -1.870, -0.330, 35.783 ], "heli_params": [ -2.396, -0.487, 3.387, -0.537, 3.041, 35.831 ], "bp2_params": [ 0.146, -0.154, 0.091, -3.128, -4.214, -0.119 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.384, "simple_Twist": 33.793, "simple_hRise": 3.386, "simple_hTwist": 33.845 }, { "index": 2, "nt1": "///A/1395", "nt2": "///A/1414", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.146, -0.154, 0.091, -3.128, -4.214, -0.119 ], "step_params": [ -0.220, -1.974, 3.031, -4.031, 7.047, 29.174 ], "heli_params": [ -5.011, -0.281, 2.503, 13.660, 7.814, 30.259 ], "bp2_params": [ 0.258, -0.121, 0.302, 3.404, 2.829, 0.272 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.031, "simple_Twist": 28.983, "simple_hRise": 2.499, "simple_hTwist": 30.075 }, { "index": 3, "nt1": "///A/1396", "nt2": "///A/1413", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 87, "helix_index": 47, "strand1": "GCC", "strand2": "CGG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.299, "helical_rise_std": 0.179, "helical_radius": 9.031, "helical_radius_std": 0.816, "helical_axis": [ -0.046, 0.459, -0.887 ], "point1": [ 187.098, 230.439, 198.663 ], "point2": [ 186.891, 232.517, 194.644 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/1400", "nt2": "///A/1409", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.126, -0.241, -0.964, -10.640, -0.903, -2.567 ], "step_params": [ -0.376, -1.631, 3.076, -6.671, 2.597, 32.166 ], "heli_params": [ -3.291, -0.398, 2.956, 4.617, 11.857, 32.933 ], "bp2_params": [ 0.166, -0.169, -0.304, -2.900, 6.282, -0.347 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.076, "simple_Twist": 30.432, "simple_hRise": 2.945, "simple_hTwist": 31.243 }, { "index": 2, "nt1": "///A/1401", "nt2": "///A/1408", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.166, -0.169, -0.304, -2.900, 6.282, -0.347 ], "step_params": [ 0.829, -1.909, 3.239, -0.202, 13.501, 35.120 ], "heli_params": [ -4.530, -1.311, 2.367, 21.421, 0.321, 37.550 ], "bp2_params": [ 0.143, -0.135, 0.332, -2.471, -6.720, 0.163 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.239, "simple_Twist": 35.041, "simple_hRise": 2.365, "simple_hTwist": 37.476 }, { "index": 3, "nt1": "///A/1402", "nt2": "///A/1407", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 88, "helix_index": 48, "strand1": "ACAGG", "strand2": "UGUCC", "bp_type": "|||||", "helix_form": ".AAA", "helical_rise": 2.619, "helical_rise_std": 0.266, "helical_radius": 9.249, "helical_radius_std": 1.730, "helical_axis": [ -0.125, -0.928, -0.352 ], "point1": [ 180.989, 215.073, 255.405 ], "point2": [ 179.694, 205.482, 251.763 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/1424", "nt2": "///A/1441", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.341, -0.523, -1.944, -18.502, -5.808, -2.049 ], "step_params": [ -0.696, 0.198, 3.182, -13.121, 0.582, 28.987 ], "heli_params": [ 0.253, -1.188, 3.195, 1.095, 24.677, 31.766 ], "bp2_params": [ 0.181, -0.266, -0.990, -6.905, -2.411, 0.578 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.182, "simple_Twist": 30.108, "simple_hRise": 3.204, "simple_hTwist": 32.787 }, { "index": 2, "nt1": "///A/1425", "nt2": "///A/1440", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.181, -0.266, -0.990, -6.905, -2.411, 0.578 ], "step_params": [ -0.442, -1.330, 3.457, -5.913, 7.838, 27.777 ], "heli_params": [ -4.326, -0.419, 3.006, 15.717, 11.857, 29.429 ], "bp2_params": [ 0.071, -0.085, -0.094, -6.595, 12.850, -0.418 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.457, "simple_Twist": 28.564, "simple_hRise": 3.023, "simple_hTwist": 30.171 }, { "index": 3, "nt1": "///A/1426", "nt2": "///A/1439", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.071, -0.085, -0.094, -6.595, 12.850, -0.418 ], "step_params": [ 0.660, -1.427, 3.275, 3.113, 18.538, 33.160 ], "heli_params": [ -4.336, -0.653, 2.247, 29.701, -4.987, 37.987 ], "bp2_params": [ -0.159, -0.166, -0.565, -10.146, -1.261, -0.605 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.275, "simple_Twist": 34.017, "simple_hRise": 2.277, "simple_hTwist": 38.731 }, { "index": 4, "nt1": "///A/1427", "nt2": "///A/1438", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.159, -0.166, -0.565, -10.146, -1.261, -0.605 ], "step_params": [ 0.075, -1.408, 3.197, -1.832, 10.940, 38.474 ], "heli_params": [ -3.217, -0.303, 2.707, 16.196, 2.712, 39.982 ], "bp2_params": [ -0.200, -0.151, -0.381, -13.013, -9.670, -1.234 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.197, "simple_Twist": 38.681, "simple_hRise": 2.710, "simple_hTwist": 40.181 }, { "index": 5, "nt1": "///A/1428", "nt2": "///A/1437", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 89, "helix_index": 48, "strand1": "CACCU", "strand2": "GUGGA", "bp_type": "|||||", "helix_form": "AAAA", "helical_rise": 2.747, "helical_rise_std": 0.280, "helical_radius": 9.401, "helical_radius_std": 0.520, "helical_axis": [ 0.432, 0.898, 0.088 ], "point1": [ 182.407, 225.573, 252.651 ], "point2": [ 187.118, 235.361, 253.613 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/1444", "nt2": "///A/1642", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.180, -0.111, 0.120, -0.887, -7.300, 0.967 ], "step_params": [ -0.723, -1.510, 3.345, -10.253, 2.706, 29.608 ], "heli_params": [ -3.317, -0.667, 3.261, 5.095, 19.300, 31.409 ], "bp2_params": [ 0.038, -0.163, 0.384, 0.355, 0.136, 0.200 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.345, "simple_Twist": 30.548, "simple_hRise": 3.269, "simple_hTwist": 32.295 }, { "index": 2, "nt1": "///A/1445", "nt2": "///A/1641", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.038, -0.163, 0.384, 0.355, 0.136, 0.200 ], "step_params": [ 0.596, -1.776, 3.104, -2.140, 1.313, 35.818 ], "heli_params": [ -3.057, -1.252, 3.000, 2.132, 3.474, 35.903 ], "bp2_params": [ 0.190, -0.242, 0.668, 2.421, -1.410, 0.948 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.104, "simple_Twist": 35.127, "simple_hRise": 2.998, "simple_hTwist": 35.214 }, { "index": 3, "nt1": "///A/1446", "nt2": "///A/1640", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.190, -0.242, 0.668, 2.421, -1.410, 0.948 ], "step_params": [ -0.528, -2.177, 3.093, -0.599, 3.384, 30.897 ], "heli_params": [ -4.654, 0.881, 2.853, 6.326, 1.120, 31.083 ], "bp2_params": [ 0.189, -0.196, 0.615, 1.742, 6.326, 2.265 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.093, "simple_Twist": 30.599, "simple_hRise": 2.851, "simple_hTwist": 30.787 }, { "index": 4, "nt1": "///A/1447", "nt2": "///A/1639", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.189, -0.196, 0.615, 1.742, 6.326, 2.265 ], "step_params": [ -0.338, -1.890, 3.147, 1.029, 5.632, 29.073 ], "heli_params": [ -4.776, 0.858, 2.727, 11.084, -2.025, 29.619 ], "bp2_params": [ -0.007, -0.276, 0.820, 8.535, 8.061, -3.038 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.147, "simple_Twist": 30.305, "simple_hRise": 2.746, "simple_hTwist": 30.829 }, { "index": 5, "nt1": "///A/1448", "nt2": "///A/1638", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 90, "helix_index": 48, "strand1": "CUCACC", "strand2": "GAGUGG", "bp_type": "||||||", "helix_form": "AAAAA", "helical_rise": 2.802, "helical_rise_std": 0.218, "helical_radius": 9.747, "helical_radius_std": 1.057, "helical_axis": [ 0.374, 0.897, 0.238 ], "point1": [ 185.782, 239.224, 255.326 ], "point2": [ 191.022, 251.792, 258.658 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/1450", "nt2": "///A/1637", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.098, -0.164, 0.304, 4.384, -3.344, 1.441 ], "step_params": [ -0.393, -2.220, 2.999, 1.601, 4.800, 33.442 ], "heli_params": [ -4.490, 0.899, 2.643, 8.282, -2.762, 33.812 ], "bp2_params": [ 0.011, -0.220, -0.179, 4.633, 3.304, 5.751 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.999, "simple_Twist": 34.546, "simple_hRise": 2.656, "simple_hTwist": 34.903 }, { "index": 2, "nt1": "///A/1451", "nt2": "///A/1636", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.011, -0.220, -0.179, 4.633, 3.304, 5.751 ], "step_params": [ -0.134, -1.866, 3.445, 3.090, 3.095, 28.149 ], "heli_params": [ -4.516, 0.993, 3.193, 6.315, -6.305, 28.480 ], "bp2_params": [ 0.183, -0.176, 0.074, 3.345, -1.226, -0.626 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.445, "simple_Twist": 26.984, "simple_hRise": 3.180, "simple_hTwist": 27.330 }, { "index": 3, "nt1": "///A/1452", "nt2": "///A/1635", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.183, -0.176, 0.074, 3.345, -1.226, -0.626 ], "step_params": [ 0.387, -1.737, 3.060, -0.010, 9.460, 32.769 ], "heli_params": [ -4.264, -0.661, 2.477, 16.347, 0.017, 34.072 ], "bp2_params": [ -0.010, -0.181, -0.121, -0.133, 2.679, 6.272 ], "groove_widths": [ 17.040, null, 17.291, null ], "simple_Rise": 3.060, "simple_Twist": 34.049, "simple_hRise": 2.503, "simple_hTwist": 35.302 }, { "index": 4, "nt1": "///A/1453", "nt2": "///A/1634", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.010, -0.181, -0.121, -0.133, 2.679, 6.272 ], "step_params": [ 0.661, -1.454, 3.243, 0.952, 2.785, 36.432 ], "heli_params": [ -2.694, -0.926, 3.143, 4.445, -1.519, 36.547 ], "bp2_params": [ 0.239, -0.147, 0.156, 2.361, 2.709, 0.868 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.243, "simple_Twist": 35.208, "simple_hRise": 3.139, "simple_hTwist": 35.327 }, { "index": 5, "nt1": "///A/1454", "nt2": "///A/1633", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.239, -0.147, 0.156, 2.361, 2.709, 0.868 ], "step_params": [ -0.277, -1.913, 2.797, 3.172, 4.329, 24.833 ], "heli_params": [ -5.349, 1.361, 2.381, 9.918, -7.268, 25.397 ], "bp2_params": [ 0.193, -0.143, -0.344, 12.025, 1.276, 1.572 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.797, "simple_Twist": 24.607, "simple_hRise": 2.377, "simple_hTwist": 25.177 }, { "index": 6, "nt1": "///A/1455", "nt2": "///A/1632", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 91, "helix_index": 49, "strand1": "GC", "strand2": "CG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.033, "helical_rise_std": 0.023, "helical_radius": 9.490, "helical_radius_std": 0.610, "helical_axis": [ 0.375, -0.886, -0.273 ], "point1": [ 202.128, 252.869, 240.634 ], "point2": [ 203.265, 250.183, 239.805 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1462", "nt2": "///A/1629", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.181, -0.251, -0.749, -3.843, -3.083, 1.530 ], "step_params": [ -0.448, -2.049, 3.098, -3.411, 2.305, 33.498 ], "heli_params": [ -3.879, 0.256, 2.984, 3.981, 5.891, 33.743 ], "bp2_params": [ 0.166, -0.175, -0.466, -4.008, -2.828, -0.323 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.098, "simple_Twist": 31.314, "simple_hRise": 2.974, "simple_hTwist": 31.576 }, { "index": 2, "nt1": "///A/1463", "nt2": "///A/1628", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 92, "helix_index": 49, "strand1": "GGGG", "strand2": "CUCC", "bp_type": "||||", "helix_form": "..A", "helical_rise": 2.741, "helical_rise_std": 0.230, "helical_radius": 8.962, "helical_radius_std": 0.707, "helical_axis": [ 0.340, -0.848, -0.407 ], "point1": [ 201.175, 239.041, 233.953 ], "point2": [ 203.961, 232.085, 230.617 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/1467", "nt2": "///A/1625", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.199, -0.309, -0.998, -3.319, -1.565, 0.665 ], "step_params": [ 0.039, -2.226, 3.389, -7.232, 6.363, 26.983 ], "heli_params": [ -5.886, -1.651, 2.703, 13.116, 14.908, 28.621 ], "bp2_params": [ -1.821, -0.342, -0.449, -10.406, 5.905, 1.408 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.389, "simple_Twist": 36.272, "simple_hRise": 2.910, "simple_hTwist": 37.488 }, { "index": 2, "nt1": "///A/1468", "nt2": "///A/1624", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.821, -0.342, -0.449, -10.406, 5.905, 1.408 ], "step_params": [ 0.185, -1.241, 2.941, -3.441, 3.714, 37.367 ], "heli_params": [ -2.344, -0.678, 2.782, 5.765, 5.341, 37.697 ], "bp2_params": [ -0.193, -0.130, 0.103, 0.117, 4.968, -0.242 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.941, "simple_Twist": 28.322, "simple_hRise": 2.718, "simple_hTwist": 28.762 }, { "index": 3, "nt1": "///A/1469", "nt2": "///A/1623", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.193, -0.130, 0.103, 0.117, 4.968, -0.242 ], "step_params": [ 0.124, -1.850, 2.906, 1.130, 5.987, 34.304 ], "heli_params": [ -3.857, -0.063, 2.559, 10.051, -1.897, 34.825 ], "bp2_params": [ -0.203, -0.145, -0.126, 7.759, 5.363, 0.032 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.906, "simple_Twist": 34.256, "simple_hRise": 2.559, "simple_hTwist": 34.778 }, { "index": 4, "nt1": "///A/1470", "nt2": "///A/1622", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 93, "helix_index": 50, "strand1": "GCAG", "strand2": "CGUC", "bp_type": "||||", "helix_form": "AAA", "helical_rise": 2.808, "helical_rise_std": 0.165, "helical_radius": 8.689, "helical_radius_std": 0.499, "helical_axis": [ -0.517, -0.575, 0.635 ], "point1": [ 221.539, 210.561, 229.483 ], "point2": [ 217.219, 205.759, 234.788 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/1475", "nt2": "///A/1612", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.189, -0.169, 0.558, 2.090, 4.331, -0.380 ], "step_params": [ -0.073, -1.480, 3.252, -1.383, 4.365, 39.112 ], "heli_params": [ -2.699, -0.051, 3.077, 6.493, 2.057, 39.369 ], "bp2_params": [ 0.170, -0.197, 0.728, 3.735, 0.078, 0.469 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.252, "simple_Twist": 37.155, "simple_hRise": 3.066, "simple_hTwist": 37.426 }, { "index": 2, "nt1": "///A/1476", "nt2": "///A/1611", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.170, -0.197, 0.728, 3.735, 0.078, 0.469 ], "step_params": [ -0.639, -1.580, 3.120, -0.770, 7.264, 33.470 ], "heli_params": [ -3.721, 0.975, 2.741, 12.430, 1.318, 34.236 ], "bp2_params": [ 0.041, -0.240, 0.779, -3.176, -7.359, -5.002 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.120, "simple_Twist": 34.032, "simple_hRise": 2.748, "simple_hTwist": 34.785 }, { "index": 3, "nt1": "///A/1477", "nt2": "///A/1610", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.041, -0.240, 0.779, -3.176, -7.359, -5.002 ], "step_params": [ -0.160, -1.347, 3.188, -0.450, 2.226, 36.044 ], "heli_params": [ -2.475, 0.197, 3.104, 3.594, 0.726, 36.113 ], "bp2_params": [ -0.196, -0.189, 0.653, -4.947, -4.417, -2.501 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.188, "simple_Twist": 37.438, "simple_hRise": 3.107, "simple_hTwist": 37.504 }, { "index": 4, "nt1": "///A/1478", "nt2": "///A/1609", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 94, "helix_index": 50, "strand1": "GGA", "strand2": "CCU", "bp_type": "|||", "helix_form": ".A", "helical_rise": 2.205, "helical_rise_std": 0.154, "helical_radius": 9.006, "helical_radius_std": 0.395, "helical_axis": [ -0.154, -0.595, 0.789 ], "point1": [ 213.719, 199.798, 243.047 ], "point2": [ 213.080, 197.323, 246.327 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/1481", "nt2": "///A/1605", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.300, -0.164, -0.540, -13.873, -11.763, 1.290 ], "step_params": [ -0.592, -1.185, 3.643, -4.838, 2.948, 33.169 ], "heli_params": [ -2.583, 0.145, 3.576, 5.117, 8.399, 33.636 ], "bp2_params": [ -0.166, -0.300, -1.174, -13.280, -2.669, 1.829 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.643, "simple_Twist": 33.206, "simple_hRise": 3.576, "simple_hTwist": 33.673 }, { "index": 2, "nt1": "///A/1482", "nt2": "///A/1604", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.166, -0.300, -1.174, -13.280, -2.669, 1.829 ], "step_params": [ 0.447, -1.278, 3.422, -2.874, 2.355, 31.146 ], "heli_params": [ -2.818, -1.382, 3.265, 4.367, 5.329, 31.362 ], "bp2_params": [ 0.133, -0.071, -0.579, -9.307, 0.696, 0.888 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.422, "simple_Twist": 29.813, "simple_hRise": 3.257, "simple_hTwist": 30.039 }, { "index": 3, "nt1": "///A/1483", "nt2": "///A/1603", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 95, "helix_index": 50, "strand1": "GGG", "strand2": "UCC", "bp_type": "|||", "helix_form": ".A", "helical_rise": 2.356, "helical_rise_std": 0.075, "helical_radius": 9.490, "helical_radius_std": 1.054, "helical_axis": [ -0.770, -0.441, 0.461 ], "point1": [ 206.722, 195.063, 259.043 ], "point2": [ 203.184, 193.038, 261.159 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/1486", "nt2": "///A/1599", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.677, -0.634, 0.302, -1.334, 3.765, -6.333 ], "step_params": [ 0.306, -1.881, 3.056, -0.675, 4.479, 44.349 ], "heli_params": [ -2.853, -0.459, 2.858, 5.915, 0.892, 44.568 ], "bp2_params": [ -0.205, -0.135, 0.197, -0.321, 5.290, 0.677 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.056, "simple_Twist": 31.266, "simple_hRise": 2.759, "simple_hTwist": 31.584 }, { "index": 2, "nt1": "///A/1487", "nt2": "///A/1598", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.205, -0.135, 0.197, -0.321, 5.290, 0.677 ], "step_params": [ -0.335, -2.250, 3.264, 3.812, 3.058, 33.008 ], "heli_params": [ -4.408, 1.193, 2.993, 5.345, -6.663, 33.358 ], "bp2_params": [ -0.170, -0.168, 0.024, 0.939, 5.592, 0.299 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.264, "simple_Twist": 33.081, "simple_hRise": 2.994, "simple_hTwist": 33.430 }, { "index": 3, "nt1": "///A/1488", "nt2": "///A/1597", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 96, "helix_index": 50, "strand1": "GCG", "strand2": "CGC", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.636, "helical_rise_std": 0.252, "helical_radius": 9.196, "helical_radius_std": 0.252, "helical_axis": [ -0.472, -0.380, 0.796 ], "point1": [ 197.669, 180.473, 268.837 ], "point2": [ 195.141, 178.438, 273.098 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/1492", "nt2": "///A/1511", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.113, -0.161, -0.279, -8.383, 1.842, 1.080 ], "step_params": [ 0.425, -2.135, 2.916, -0.816, 2.783, 31.530 ], "heli_params": [ -4.356, -0.910, 2.711, 5.108, 1.499, 31.660 ], "bp2_params": [ 0.154, -0.177, -0.056, 3.679, 2.125, 1.639 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.916, "simple_Twist": 29.665, "simple_hRise": 2.696, "simple_hTwist": 29.804 }, { "index": 2, "nt1": "///A/1493", "nt2": "///A/1510", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.154, -0.177, -0.056, 3.679, 2.125, 1.639 ], "step_params": [ 0.145, -1.269, 3.271, 3.251, 25.611, 31.779 ], "heli_params": [ -4.324, 0.109, 1.807, 39.615, -5.028, 40.732 ], "bp2_params": [ -0.111, -0.183, -0.569, -7.799, 1.490, 0.528 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.271, "simple_Twist": 33.418, "simple_hRise": 1.883, "simple_hTwist": 42.002 }, { "index": 3, "nt1": "///A/1494", "nt2": "///A/1509", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 97, "helix_index": 53, "strand1": "UC", "strand2": "GG", "bp_type": "||", "helix_form": "A", "helical_rise": 2.529, "helical_rise_std": 0.019, "helical_radius": 9.416, "helical_radius_std": 2.004, "helical_axis": [ 0.774, 0.566, -0.284 ], "point1": [ 190.317, 200.557, 270.768 ], "point2": [ 192.274, 201.989, 270.048 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1513", "nt2": "///A/1572", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.818, -0.571, -0.448, -4.720, 5.550, 0.366 ], "step_params": [ 0.504, -1.357, 3.046, -0.908, 5.558, 27.820 ], "heli_params": [ -3.908, -1.214, 2.711, 11.413, 1.865, 28.374 ], "bp2_params": [ 0.223, -0.199, -0.003, 6.785, 8.726, 0.153 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.046, "simple_Twist": 31.175, "simple_hRise": 2.754, "simple_hTwist": 31.667 }, { "index": 2, "nt1": "///A/1514", "nt2": "///A/1571", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 98, "helix_index": 51, "strand1": "AGGC", "strand2": "UCCG", "bp_type": "||||", "helix_form": "AAA", "helical_rise": 2.404, "helical_rise_std": 0.130, "helical_radius": 9.446, "helical_radius_std": 0.996, "helical_axis": [ 0.908, 0.076, -0.412 ], "point1": [ 216.796, 219.966, 254.061 ], "point2": [ 223.197, 220.501, 251.157 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/1524", "nt2": "///A/1560", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.166, -0.189, 0.145, 2.172, 2.770, -0.501 ], "step_params": [ -0.221, -1.767, 3.348, -0.884, 3.076, 25.429 ], "heli_params": [ -4.849, 0.249, 3.121, 6.953, 1.997, 25.626 ], "bp2_params": [ -0.184, -0.172, -0.302, 0.217, 3.319, 1.395 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.348, "simple_Twist": 26.012, "simple_hRise": 3.127, "simple_hTwist": 26.205 }, { "index": 2, "nt1": "///A/1525", "nt2": "///A/1559", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.184, -0.172, -0.302, 0.217, 3.319, 1.395 ], "step_params": [ -0.045, -1.732, 3.037, -1.181, 5.015, 30.678 ], "heli_params": [ -4.082, -0.117, 2.726, 9.395, 2.213, 31.097 ], "bp2_params": [ -0.165, -0.188, -0.285, 0.751, 0.906, 0.583 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.037, "simple_Twist": 30.652, "simple_hRise": 2.726, "simple_hTwist": 31.072 }, { "index": 3, "nt1": "///A/1526", "nt2": "///A/1558", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.165, -0.188, -0.285, 0.751, 0.906, 0.583 ], "step_params": [ 0.033, -1.954, 3.302, 0.222, 2.525, 32.733 ], "heli_params": [ -3.885, -0.021, 3.146, 4.472, -0.394, 32.828 ], "bp2_params": [ 0.190, -0.158, -0.005, 0.391, 3.392, -0.679 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.302, "simple_Twist": 30.451, "simple_hRise": 3.133, "simple_hTwist": 30.554 }, { "index": 4, "nt1": "///A/1527", "nt2": "///A/1557", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 99, "helix_index": 52, "strand1": "GGGAAA", "strand2": "CCCUUU", "bp_type": "||||||", "helix_form": ".AAAA", "helical_rise": 2.773, "helical_rise_std": 0.280, "helical_radius": 8.925, "helical_radius_std": 0.289, "helical_axis": [ -0.737, 0.599, -0.313 ], "point1": [ 233.440, 233.376, 241.716 ], "point2": [ 223.214, 241.689, 237.380 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/1529", "nt2": "///A/1552", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.109, -0.468, -1.442, -14.799, -0.067, 1.065 ], "step_params": [ 0.011, -0.546, 2.917, -4.781, 5.874, 24.394 ], "heli_params": [ -2.698, -1.216, 2.664, 13.490, 10.980, 25.526 ], "bp2_params": [ -0.172, -0.404, -1.127, -1.359, 1.904, -2.797 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.917, "simple_Twist": 24.490, "simple_hRise": 2.665, "simple_hTwist": 25.617 }, { "index": 2, "nt1": "///A/1530", "nt2": "///A/1551", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.172, -0.404, -1.127, -1.359, 1.904, -2.797 ], "step_params": [ 0.619, -1.816, 3.311, -4.963, 6.398, 35.055 ], "heli_params": [ -3.810, -1.677, 2.835, 10.450, 8.107, 35.949 ], "bp2_params": [ -0.109, -0.157, -0.345, -8.226, 3.253, 0.465 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.311, "simple_Twist": 35.270, "simple_hRise": 2.839, "simple_hTwist": 36.159 }, { "index": 3, "nt1": "///A/1531", "nt2": "///A/1550", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.109, -0.157, -0.345, -8.226, 3.253, 0.465 ], "step_params": [ 0.393, -1.567, 2.953, 1.564, 8.402, 34.128 ], "heli_params": [ -3.661, -0.452, 2.523, 14.044, -2.614, 35.151 ], "bp2_params": [ 0.091, -0.174, -0.337, -0.648, 11.827, -3.605 ], "groove_widths": [ 17.286, null, 15.316, null ], "simple_Rise": 2.953, "simple_Twist": 32.548, "simple_hRise": 2.498, "simple_hTwist": 33.622 }, { "index": 4, "nt1": "///A/1532", "nt2": "///A/1549", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.091, -0.174, -0.337, -0.648, 11.827, -3.605 ], "step_params": [ -0.037, -1.680, 3.225, 3.712, 14.241, 35.532 ], "heli_params": [ -4.146, 0.471, 2.388, 22.198, -5.786, 38.369 ], "bp2_params": [ 0.099, -0.159, -0.719, -5.098, -0.384, -1.053 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.225, "simple_Twist": 35.571, "simple_hRise": 2.389, "simple_hTwist": 38.404 }, { "index": 5, "nt1": "///A/1533", "nt2": "///A/1548", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.099, -0.159, -0.719, -5.098, -0.384, -1.053 ], "step_params": [ 0.314, -1.470, 2.987, -4.522, -0.920, 28.879 ], "heli_params": [ -2.731, -1.517, 2.949, -1.829, 8.995, 29.237 ], "bp2_params": [ 0.027, -0.181, -0.330, 3.998, 1.421, 1.418 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.987, "simple_Twist": 29.216, "simple_hRise": 2.950, "simple_hTwist": 29.571 }, { "index": 6, "nt1": "///A/1534", "nt2": "///A/1547", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 100, "helix_index": 52, "strand1": "GG", "strand2": "CC", "bp_type": "||", "helix_form": "A", "helical_rise": 2.907, "helical_rise_std": 0.003, "helical_radius": 9.670, "helical_radius_std": 0.507, "helical_axis": [ -0.859, 0.409, -0.309 ], "point1": [ 219.163, 245.956, 231.986 ], "point2": [ 216.667, 247.145, 231.089 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1537", "nt2": "///A/1545", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.132, -0.199, 0.670, 6.079, 2.304, 1.752 ], "step_params": [ -0.134, -2.287, 3.055, 1.321, 1.691, 31.984 ], "heli_params": [ -4.420, 0.461, 2.926, 3.064, -2.394, 32.054 ], "bp2_params": [ -0.136, -0.150, 0.297, 4.951, -1.100, 0.115 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.055, "simple_Twist": 31.989, "simple_hRise": 2.926, "simple_hTwist": 32.059 }, { "index": 2, "nt1": "///A/1538", "nt2": "///A/1544", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 101, "helix_index": 53, "strand1": "GC", "strand2": "CG", "bp_type": "||", "helix_form": "A", "helical_rise": 2.881, "helical_rise_std": 0.012, "helical_radius": 9.883, "helical_radius_std": 0.210, "helical_axis": [ -0.744, -0.661, -0.098 ], "point1": [ 177.757, 190.621, 264.498 ], "point2": [ 175.613, 188.719, 264.216 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1576", "nt2": "///A/1590", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.168, -0.214, -0.882, -6.086, -1.092, 1.482 ], "step_params": [ 0.083, -1.476, 3.006, -2.327, 2.897, 30.070 ], "heli_params": [ -3.350, -0.580, 2.840, 5.556, 4.463, 30.293 ], "bp2_params": [ 0.167, -0.184, -0.545, 1.677, 0.219, 1.636 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.006, "simple_Twist": 27.813, "simple_hRise": 2.825, "simple_hTwist": 28.056 }, { "index": 2, "nt1": "///A/1577", "nt2": "///A/1589", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 102, "helix_index": 54, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": ".", "helical_rise": 3.414, "helical_rise_std": 0.050, "helical_radius": 9.296, "helical_radius_std": 0.732, "helical_axis": [ -0.474, -0.336, -0.814 ], "point1": [ 181.247, 185.643, 222.968 ], "point2": [ 179.630, 184.495, 220.192 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1656", "nt2": "///A/1665", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.126, -0.109, -0.271, 14.402, 13.064, 0.188 ], "step_params": [ -0.280, -2.075, 3.387, -2.444, 3.602, 36.019 ], "heli_params": [ -3.841, 0.105, 3.183, 5.799, 3.934, 36.273 ], "bp2_params": [ 0.141, -0.209, -0.216, 7.788, 7.791, -0.689 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.387, "simple_Twist": 36.574, "simple_hRise": 3.187, "simple_hTwist": 36.823 }, { "index": 2, "nt1": "///A/1657", "nt2": "///A/1664", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 103, "helix_index": 44, "strand1": "AGGA", "strand2": "UCCU", "bp_type": "||||", "helix_form": ".AA", "helical_rise": 2.742, "helical_rise_std": 0.506, "helical_radius": 8.789, "helical_radius_std": 0.601, "helical_axis": [ 0.988, 0.026, 0.150 ], "point1": [ 197.104, 178.418, 241.255 ], "point2": [ 205.297, 178.633, 242.498 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/1672", "nt2": "///A/1684", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.102, -0.262, -1.413, -13.367, -5.105, -6.941 ], "step_params": [ -0.742, -2.251, 3.151, -13.624, 11.160, 25.514 ], "heli_params": [ -6.146, -0.958, 2.133, 22.211, 27.116, 30.919 ], "bp2_params": [ -0.139, -0.092, -0.062, -12.099, 6.187, -1.040 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.151, "simple_Twist": 27.448, "simple_hRise": 2.217, "simple_hTwist": 32.521 }, { "index": 2, "nt1": "///A/1673", "nt2": "///A/1683", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.139, -0.092, -0.062, -12.099, 6.187, -1.040 ], "step_params": [ -0.494, -1.671, 3.485, -4.578, 6.159, 29.337 ], "heli_params": [ -4.473, -0.004, 3.117, 11.906, 8.849, 30.303 ], "bp2_params": [ -0.167, -0.134, -0.206, -9.912, 16.899, 0.710 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.485, "simple_Twist": 29.708, "simple_hRise": 3.123, "simple_hTwist": 30.662 }, { "index": 3, "nt1": "///A/1674", "nt2": "///A/1682", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.167, -0.134, -0.206, -9.912, 16.899, 0.710 ], "step_params": [ -0.105, -0.875, 3.335, 0.553, 20.037, 33.001 ], "heli_params": [ -3.707, 0.225, 2.431, 31.878, -0.879, 38.466 ], "bp2_params": [ 0.251, -0.057, -0.417, -0.424, 14.160, -5.750 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.335, "simple_Twist": 30.751, "simple_hRise": 2.349, "simple_hTwist": 36.574 }, { "index": 4, "nt1": "///A/1675", "nt2": "///A/1681", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 104, "helix_index": 40, "strand1": "CGAG", "strand2": "GCUC", "bp_type": "||||", "helix_form": ".A.", "helical_rise": 1.905, "helical_rise_std": 0.413, "helical_radius": 9.872, "helical_radius_std": 1.536, "helical_axis": [ 0.813, -0.106, 0.572 ], "point1": [ 169.180, 157.958, 219.791 ], "point2": [ 173.847, 157.347, 223.072 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/1693", "nt2": "///A/2038", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.187, -0.201, 0.563, 5.846, 7.980, 2.211 ], "step_params": [ 1.151, -2.577, 3.047, 12.414, 27.770, 26.416 ], "heli_params": [ -5.949, -0.701, 0.629, 45.605, -20.387, 40.082 ], "bp2_params": [ -0.182, -0.123, -0.098, -6.109, -1.519, 1.000 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.047, "simple_Twist": 28.702, "simple_hRise": 0.780, "simple_hTwist": 41.588 }, { "index": 2, "nt1": "///A/1694", "nt2": "///A/2037", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.182, -0.123, -0.098, -6.109, -1.519, 1.000 ], "step_params": [ -0.131, -1.760, 2.956, -3.221, 5.978, 34.312 ], "heli_params": [ -3.707, -0.201, 2.623, 10.012, 5.394, 34.958 ], "bp2_params": [ 0.067, -0.108, 0.253, -4.420, -5.982, -2.439 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.956, "simple_Twist": 32.763, "simple_hRise": 2.604, "simple_hTwist": 33.440 }, { "index": 3, "nt1": "///A/1695", "nt2": "///A/2036", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.067, -0.108, 0.253, -4.420, -5.982, -2.439 ], "step_params": [ 0.714, -2.221, 2.820, 11.547, 8.110, 32.179 ], "heli_params": [ -4.687, 0.240, 2.324, 13.831, -19.693, 35.062 ], "bp2_params": [ -0.186, -0.168, -0.164, 16.904, -1.383, -1.113 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.820, "simple_Twist": 33.792, "simple_hRise": 2.355, "simple_hTwist": 36.540 }, { "index": 4, "nt1": "///A/1696", "nt2": "///A/2035", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 105, "helix_index": 40, "strand1": "CUCUCGUU", "strand2": "GAGAGCAA", "bp_type": "||||||||", "helix_form": "AAAAAAA", "helical_rise": 2.609, "helical_rise_std": 0.307, "helical_radius": 9.754, "helical_radius_std": 1.039, "helical_axis": [ 0.992, 0.060, -0.108 ], "point1": [ 182.214, 149.739, 220.456 ], "point2": [ 200.422, 150.845, 218.483 ], "num_pairs": 8, "pairs": [ { "index": 1, "nt1": "///A/1701", "nt2": "///A/2033", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.163, -0.160, 0.339, 3.616, 1.360, -0.200 ], "step_params": [ -1.064, -2.407, 3.096, -4.734, 10.736, 24.965 ], "heli_params": [ -7.236, 1.273, 2.067, 23.264, 10.259, 27.545 ], "bp2_params": [ -0.637, -0.018, 0.546, 4.844, 11.462, -4.154 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.096, "simple_Twist": 29.137, "simple_hRise": 2.232, "simple_hTwist": 31.363 }, { "index": 2, "nt1": "///A/1702", "nt2": "///A/2032", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.637, -0.018, 0.546, 4.844, 11.462, -4.154 ], "step_params": [ 0.704, -1.881, 3.181, -1.320, 3.880, 36.185 ], "heli_params": [ -3.517, -1.300, 2.944, 6.222, 2.117, 36.408 ], "bp2_params": [ 0.224, -0.254, 0.744, 4.187, 5.856, 0.917 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.181, "simple_Twist": 31.885, "simple_hRise": 2.907, "simple_hTwist": 32.140 }, { "index": 3, "nt1": "///A/1703", "nt2": "///A/2031", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.224, -0.254, 0.744, 4.187, 5.856, 0.917 ], "step_params": [ 0.054, -2.013, 3.086, 1.120, 4.123, 35.244 ], "heli_params": [ -3.851, 0.060, 2.840, 6.779, -1.842, 35.494 ], "bp2_params": [ -0.035, -0.182, 0.467, 6.034, 7.289, 1.965 ], "groove_widths": [ 17.543, null, 16.361, null ], "simple_Rise": 3.086, "simple_Twist": 36.431, "simple_hRise": 2.849, "simple_hTwist": 36.673 }, { "index": 4, "nt1": "///A/1704", "nt2": "///A/2030", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.035, -0.182, 0.467, 6.034, 7.289, 1.965 ], "step_params": [ 0.692, -2.344, 3.172, 13.886, 12.821, 30.590 ], "heli_params": [ -5.438, 0.640, 2.163, 21.877, -23.696, 35.839 ], "bp2_params": [ 0.154, -0.195, -0.708, -2.898, -5.280, 1.403 ], "groove_widths": [ 17.163, 15.001, 17.418, 13.632 ], "simple_Rise": 3.172, "simple_Twist": 29.220, "simple_hRise": 2.108, "simple_hTwist": 34.687 }, { "index": 5, "nt1": "///A/1705", "nt2": "///A/2029", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.154, -0.195, -0.708, -2.898, -5.280, 1.403 ], "step_params": [ -0.650, -2.031, 3.117, -7.515, 13.286, 32.201 ], "heli_params": [ -4.994, 0.122, 2.226, 22.448, 12.696, 35.549 ], "bp2_params": [ -0.165, -0.190, 0.501, -6.140, 3.975, -0.096 ], "groove_widths": [ 17.298, null, 19.332, null ], "simple_Rise": 3.117, "simple_Twist": 34.546, "simple_hRise": 2.298, "simple_hTwist": 37.673 }, { "index": 6, "nt1": "///A/1706", "nt2": "///A/2028", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.165, -0.190, 0.501, -6.140, 3.975, -0.096 ], "step_params": [ -0.240, -2.241, 3.370, -1.335, 1.686, 23.489 ], "heli_params": [ -6.052, 0.137, 3.212, 4.130, 3.271, 23.586 ], "bp2_params": [ -0.105, -0.069, 0.527, -3.683, 11.905, -0.571 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.370, "simple_Twist": 22.776, "simple_hRise": 3.207, "simple_hTwist": 22.876 }, { "index": 7, "nt1": "///A/1707", "nt2": "///A/2027", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.105, -0.069, 0.527, -3.683, 11.905, -0.571 ], "step_params": [ 0.146, -2.086, 3.013, -0.017, 13.534, 34.517 ], "heli_params": [ -4.756, -0.233, 2.077, 21.799, 0.027, 37.000 ], "bp2_params": [ 0.009, -0.068, 0.464, 4.750, 6.083, 0.562 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.013, "simple_Twist": 34.179, "simple_hRise": 2.067, "simple_hTwist": 36.687 }, { "index": 8, "nt1": "///A/1708", "nt2": "///A/2026", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 106, "helix_index": 55, "strand1": "AG", "strand2": "UC", "bp_type": "||", "helix_form": ".", "helical_rise": 3.804, "helical_rise_std": 0.100, "helical_radius": 10.121, "helical_radius_std": 1.627, "helical_axis": [ 0.619, 0.778, -0.109 ], "point1": [ 205.828, 141.940, 218.906 ], "point2": [ 208.181, 144.900, 218.492 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1710", "nt2": "///A/2024", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.189, -0.105, -1.043, -16.796, -1.589, -2.487 ], "step_params": [ 1.444, -1.742, 3.398, -4.608, -3.487, 25.075 ], "heli_params": [ -2.897, -4.584, 3.291, -7.899, 10.438, 25.722 ], "bp2_params": [ -0.077, -0.119, -0.285, -9.702, 22.733, 0.177 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.398, "simple_Twist": 27.611, "simple_hRise": 3.308, "simple_hTwist": 28.198 }, { "index": 2, "nt1": "///A/1711", "nt2": "///A/2023", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 107, "helix_index": 56, "strand1": "ACCCC", "strand2": "UGGGG", "bp_type": "|||||", "helix_form": "AAA.", "helical_rise": 2.782, "helical_rise_std": 0.325, "helical_radius": 9.639, "helical_radius_std": 0.957, "helical_axis": [ 0.666, 0.673, -0.320 ], "point1": [ 220.526, 161.641, 234.517 ], "point2": [ 227.996, 169.190, 230.931 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/1727", "nt2": "///A/1751", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.036, -0.073, -0.210, -8.422, 6.974, -1.785 ], "step_params": [ 0.502, -1.058, 3.115, -2.027, 6.474, 30.097 ], "heli_params": [ -3.142, -1.305, 2.793, 12.271, 3.842, 30.835 ], "bp2_params": [ 0.182, -0.157, 0.046, 4.033, 6.922, 0.928 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.115, "simple_Twist": 29.283, "simple_hRise": 2.782, "simple_hTwist": 30.041 }, { "index": 2, "nt1": "///A/1728", "nt2": "///A/1750", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.182, -0.157, 0.046, 4.033, 6.922, 0.928 ], "step_params": [ 0.568, -1.898, 3.073, -0.452, 3.606, 34.614 ], "heli_params": [ -3.674, -1.012, 2.860, 6.039, 0.757, 34.798 ], "bp2_params": [ 0.193, -0.156, 0.155, 5.734, 2.851, 2.167 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.073, "simple_Twist": 34.413, "simple_hRise": 2.858, "simple_hTwist": 34.598 }, { "index": 3, "nt1": "///A/1729", "nt2": "///A/1749", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.193, -0.156, 0.155, 5.734, 2.851, 2.167 ], "step_params": [ -0.413, -2.080, 3.067, 2.713, 16.171, 33.494 ], "heli_params": [ -4.978, 0.935, 1.864, 26.200, -4.395, 37.189 ], "bp2_params": [ 0.170, -0.175, 0.010, 1.941, 5.133, -0.324 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.067, "simple_Twist": 33.585, "simple_hRise": 1.867, "simple_hTwist": 37.271 }, { "index": 4, "nt1": "///A/1730", "nt2": "///A/1748", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.170, -0.175, 0.010, 1.941, 5.133, -0.324 ], "step_params": [ -0.482, -2.413, 3.035, -1.592, 9.195, 40.823 ], "heli_params": [ -4.201, 0.533, 2.475, 12.979, 2.246, 41.832 ], "bp2_params": [ 2.431, -0.338, 0.235, 3.892, -4.227, 2.109 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.035, "simple_Twist": 28.658, "simple_hRise": 2.195, "simple_hTwist": 30.109 }, { "index": 5, "nt1": "///A/1731", "nt2": "///A/1747", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 108, "helix_index": 57, "strand1": "GCUCU", "strand2": "CGAGA", "bp_type": "|||||", "helix_form": "..AA", "helical_rise": 2.811, "helical_rise_std": 0.194, "helical_radius": 9.238, "helical_radius_std": 0.698, "helical_axis": [ 0.015, 0.881, 0.473 ], "point1": [ 223.923, 156.614, 251.685 ], "point2": [ 224.087, 166.478, 256.982 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/1752", "nt2": "///A/1780", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.179, -0.212, 0.456, 4.327, 0.851, -2.002 ], "step_params": [ 0.094, -1.724, 3.272, 4.539, -1.184, 37.992 ], "heli_params": [ -2.480, 0.432, 3.312, -1.810, -6.939, 38.269 ], "bp2_params": [ 0.205, -0.179, -0.273, 3.158, -1.323, 0.597 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.272, "simple_Twist": 35.854, "simple_hRise": 3.313, "simple_hTwist": 36.149 }, { "index": 2, "nt1": "///A/1753", "nt2": "///A/1779", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.205, -0.179, -0.273, 3.158, -1.323, 0.597 ], "step_params": [ -0.588, -2.070, 3.175, -6.531, 8.817, 30.818 ], "heli_params": [ -5.062, 0.021, 2.569, 15.969, 11.829, 32.668 ], "bp2_params": [ -0.063, -0.137, 0.340, 2.026, 6.194, -0.554 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.175, "simple_Twist": 32.424, "simple_hRise": 2.606, "simple_hTwist": 34.183 }, { "index": 3, "nt1": "///A/1754", "nt2": "///A/1778", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.063, -0.137, 0.340, 2.026, 6.194, -0.554 ], "step_params": [ -0.377, -1.777, 2.977, 0.287, 4.060, 35.572 ], "heli_params": [ -3.404, 0.650, 2.761, 6.618, -0.468, 35.796 ], "bp2_params": [ 0.180, -0.223, 0.366, 6.925, 3.469, -2.132 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.977, "simple_Twist": 34.356, "simple_hRise": 2.752, "simple_hTwist": 34.589 }, { "index": 4, "nt1": "///A/1755", "nt2": "///A/1777", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.180, -0.223, 0.366, 6.925, 3.469, -2.132 ], "step_params": [ 0.323, -1.527, 2.920, 4.687, 2.271, 28.635 ], "heli_params": [ -3.479, 0.264, 2.809, 4.544, -9.379, 29.095 ], "bp2_params": [ -0.120, -0.122, -0.401, 15.165, -0.118, 0.088 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.920, "simple_Twist": 30.112, "simple_hRise": 2.816, "simple_hTwist": 30.549 }, { "index": 5, "nt1": "///A/1756", "nt2": "///A/1776", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 109, "helix_index": 57, "strand1": "GGGU", "strand2": "CCCG", "bp_type": "||||", "helix_form": "AA.", "helical_rise": 3.091, "helical_rise_std": 0.131, "helical_radius": 9.645, "helical_radius_std": 0.370, "helical_axis": [ 0.114, 0.902, 0.416 ], "point1": [ 222.710, 178.187, 261.901 ], "point2": [ 223.775, 186.623, 265.790 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/1761", "nt2": "///A/1772", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.239, -0.159, -0.219, -6.702, -3.132, -1.029 ], "step_params": [ 0.437, -2.174, 3.009, 2.552, 5.829, 33.593 ], "heli_params": [ -4.500, -0.394, 2.631, 9.974, -4.366, 34.173 ], "bp2_params": [ -0.167, -0.188, -0.320, -1.477, 2.129, -0.979 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.009, "simple_Twist": 33.466, "simple_hRise": 2.629, "simple_hTwist": 34.049 }, { "index": 2, "nt1": "///A/1762", "nt2": "///A/1771", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.167, -0.188, -0.320, -1.477, 2.129, -0.979 ], "step_params": [ 0.140, -2.165, 3.184, -2.910, 6.134, 30.982 ], "heli_params": [ -4.989, -0.744, 2.692, 11.312, 5.367, 31.699 ], "bp2_params": [ -0.162, -0.152, 0.102, -2.491, 7.526, 0.963 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.184, "simple_Twist": 31.038, "simple_hRise": 2.693, "simple_hTwist": 31.754 }, { "index": 3, "nt1": "///A/1763", "nt2": "///A/1770", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.162, -0.152, 0.102, -2.491, 7.526, 0.963 ], "step_params": [ 0.594, -1.429, 3.107, 2.174, 3.403, 42.667 ], "heli_params": [ -2.274, -0.609, 3.014, 4.664, -2.979, 42.849 ], "bp2_params": [ 2.988, -0.549, -0.141, 2.417, 12.369, 5.390 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.107, "simple_Twist": 24.497, "simple_hRise": 2.925, "simple_hTwist": 24.822 }, { "index": 4, "nt1": "///A/1764", "nt2": "///A/1769", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 110, "helix_index": 55, "strand1": "GCCCAGG", "strand2": "CGGGUCU", "bp_type": "|||||||", "helix_form": "AA....", "helical_rise": 2.674, "helical_rise_std": 0.261, "helical_radius": 10.507, "helical_radius_std": 0.898, "helical_axis": [ 0.470, 0.850, -0.239 ], "point1": [ 216.952, 159.313, 210.983 ], "point2": [ 224.480, 172.925, 207.161 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///A/1793", "nt2": "///A/2017", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.221, -0.235, 0.787, 3.217, 8.413, 4.503 ], "step_params": [ 0.728, -2.103, 3.214, 3.189, 2.093, 30.989 ], "heli_params": [ -4.295, -0.763, 3.126, 3.899, -5.939, 31.217 ], "bp2_params": [ 0.207, -0.160, 0.396, 6.343, 7.394, 3.341 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.214, "simple_Twist": 28.244, "simple_hRise": 3.115, "simple_hTwist": 28.496 }, { "index": 2, "nt1": "///A/1794", "nt2": "///A/2016", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.207, -0.160, 0.396, 6.343, 7.394, 3.341 ], "step_params": [ -0.038, -2.170, 3.250, 7.784, 9.237, 33.727 ], "heli_params": [ -4.744, 1.083, 2.518, 15.324, -12.913, 35.765 ], "bp2_params": [ 0.220, -0.189, -0.348, -2.798, -5.832, 2.003 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.250, "simple_Twist": 33.906, "simple_hRise": 2.522, "simple_hTwist": 35.934 }, { "index": 3, "nt1": "///A/1795", "nt2": "///A/2015", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.220, -0.189, -0.348, -2.798, -5.832, 2.003 ], "step_params": [ -0.152, -2.482, 3.264, -6.611, -0.556, 28.679 ], "heli_params": [ -4.766, -1.132, 3.263, -1.104, 13.125, 29.421 ], "bp2_params": [ 0.143, -0.244, 0.676, 1.865, -1.621, -1.423 ], "groove_widths": [ 16.765, null, 19.727, null ], "simple_Rise": 3.264, "simple_Twist": 28.942, "simple_hRise": 3.264, "simple_hTwist": 29.677 }, { "index": 4, "nt1": "///A/1796", "nt2": "///A/2014", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.143, -0.244, 0.676, 1.865, -1.621, -1.423 ], "step_params": [ 0.420, -2.557, 3.172, -0.256, 10.449, 24.541 ], "heli_params": [ -7.775, -0.966, 1.935, 23.279, 0.571, 26.642 ], "bp2_params": [ 0.005, -0.210, 0.794, -3.645, -6.602, -4.434 ], "groove_widths": [ 17.316, null, 18.843, null ], "simple_Rise": 3.172, "simple_Twist": 24.919, "simple_hRise": 1.955, "simple_hTwist": 26.990 }, { "index": 5, "nt1": "///A/1797", "nt2": "///A/2013", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.005, -0.210, 0.794, -3.645, -6.602, -4.434 ], "step_params": [ 0.570, -2.163, 2.929, 0.318, 6.636, 30.368 ], "heli_params": [ -5.091, -1.014, 2.419, 12.480, -0.598, 31.070 ], "bp2_params": [ -0.154, -0.301, 0.840, 0.665, -0.048, 1.541 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.929, "simple_Twist": 31.938, "simple_hRise": 2.447, "simple_hTwist": 32.604 }, { "index": 6, "nt1": "///A/1798", "nt2": "///A/2012", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.154, -0.301, 0.840, 0.665, -0.048, 1.541 ], "step_params": [ 0.576, -2.381, 3.129, 0.796, 3.439, 28.233 ], "heli_params": [ -5.567, -1.004, 2.839, 7.016, -1.624, 28.449 ], "bp2_params": [ -1.742, -0.314, 0.445, -1.907, 4.891, 5.777 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.129, "simple_Twist": 37.284, "simple_hRise": 2.916, "simple_hTwist": 37.445 }, { "index": 7, "nt1": "///A/1799", "nt2": "///A/2011", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 111, "helix_index": 55, "strand1": "CG", "strand2": "GC", "bp_type": "||", "helix_form": "A", "helical_rise": 1.364, "helical_rise_std": 0.086, "helical_radius": 7.148, "helical_radius_std": 1.158, "helical_axis": [ 0.313, 0.596, -0.739 ], "point1": [ 226.673, 175.838, 204.866 ], "point2": [ 227.099, 176.649, 203.860 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1800", "nt2": "///A/2009", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.161, -0.113, 0.159, -2.077, 3.793, -0.033 ], "step_params": [ 0.213, -1.142, 2.572, 0.347, 18.862, 24.379 ], "heli_params": [ -4.650, -0.356, 1.361, 38.190, -0.703, 30.738 ], "bp2_params": [ -0.458, 0.296, 0.033, 19.666, -13.244, 4.633 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.572, "simple_Twist": 28.228, "simple_hRise": 1.534, "simple_hTwist": 33.845 }, { "index": 2, "nt1": "///A/1801", "nt2": "///A/2008", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 112, "helix_index": 31, "strand1": "GU", "strand2": "CA", "bp_type": "||", "helix_form": ".", "helical_rise": 3.263, "helical_rise_std": 0.021, "helical_radius": 8.623, "helical_radius_std": 0.921, "helical_axis": [ -0.806, -0.582, 0.109 ], "point1": [ 215.779, 185.749, 202.901 ], "point2": [ 213.150, 183.850, 203.257 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1805", "nt2": "///A/1817", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.146, -0.244, 0.860, 7.549, -3.767, -0.582 ], "step_params": [ -0.193, -2.007, 3.288, 3.991, -0.551, 42.377 ], "heli_params": [ -2.709, 0.671, 3.283, -0.760, -5.506, 42.559 ], "bp2_params": [ -0.018, -0.158, 0.239, 0.943, -6.743, 0.296 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.288, "simple_Twist": 42.012, "simple_hRise": 3.282, "simple_hTwist": 42.196 }, { "index": 2, "nt1": "///A/1806", "nt2": "///A/1816", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 113, "helix_index": 59, "strand1": "GGUCUCU", "strand2": "UCGGGGA", "bp_type": "|||||||", "helix_form": "......", "helical_rise": 2.863, "helical_rise_std": 0.092, "helical_radius": 9.391, "helical_radius_std": 0.305, "helical_axis": [ 0.433, 0.874, -0.220 ], "point1": [ 220.005, 199.055, 196.780 ], "point2": [ 227.441, 214.084, 193.004 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///A/1821", "nt2": "///A/1856", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.911, -0.398, 0.022, -5.118, 0.850, 0.833 ], "step_params": [ 0.246, -1.937, 3.408, 0.260, 2.341, 33.394 ], "heli_params": [ -3.758, -0.384, 3.271, 4.067, -0.451, 33.475 ], "bp2_params": [ -0.177, -0.133, -0.218, -3.324, 5.363, 0.814 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.408, "simple_Twist": 24.052, "simple_hRise": 3.210, "simple_hTwist": 24.166 }, { "index": 2, "nt1": "///A/1822", "nt2": "///A/1855", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.177, -0.133, -0.218, -3.324, 5.363, 0.814 ], "step_params": [ 0.627, -1.381, 3.151, 1.899, 2.313, 40.492 ], "heli_params": [ -2.236, -0.701, 3.095, 3.337, -2.739, 40.598 ], "bp2_params": [ 2.250, -0.194, -0.402, 2.512, 10.314, 8.835 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.151, "simple_Twist": 26.527, "simple_hRise": 3.058, "simple_hTwist": 26.692 }, { "index": 3, "nt1": "///A/1823", "nt2": "///A/1854", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.250, -0.194, -0.402, 2.512, 10.314, 8.835 ], "step_params": [ -0.524, -2.136, 3.137, 5.263, 11.444, 24.342 ], "heli_params": [ -6.797, 2.156, 1.817, 25.104, -11.546, 27.364 ], "bp2_params": [ 0.198, -0.176, -0.254, -0.484, 3.224, 1.197 ], "groove_widths": [ 17.412, null, 17.027, null ], "simple_Rise": 3.137, "simple_Twist": 35.859, "simple_hRise": 2.277, "simple_hTwist": 37.938 }, { "index": 4, "nt1": "///A/1824", "nt2": "///A/1853", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.198, -0.176, -0.254, -0.484, 3.224, 1.197 ], "step_params": [ 0.462, -1.464, 3.254, -0.207, 2.507, 36.141 ], "heli_params": [ -2.699, -0.772, 3.147, 4.035, 0.333, 36.226 ], "bp2_params": [ 1.852, -0.339, 0.284, 1.957, 3.368, 3.927 ], "groove_widths": [ 17.466, null, 17.311, null ], "simple_Rise": 3.254, "simple_Twist": 27.096, "simple_hRise": 3.105, "simple_hTwist": 27.211 }, { "index": 5, "nt1": "///A/1825", "nt2": "///A/1852", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.852, -0.339, 0.284, 1.957, 3.368, 3.927 ], "step_params": [ -0.119, -1.909, 2.675, 6.087, 9.344, 26.549 ], "heli_params": [ -5.351, 1.222, 1.840, 19.300, -12.572, 28.758 ], "bp2_params": [ 0.178, -0.089, -0.257, 14.369, 4.872, 2.947 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.675, "simple_Twist": 35.660, "simple_hRise": 2.080, "simple_hTwist": 37.309 }, { "index": 6, "nt1": "///A/1826", "nt2": "///A/1851", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.178, -0.089, -0.257, 14.369, 4.872, 2.947 ], "step_params": [ 0.875, -1.075, 2.943, 8.163, 5.090, 28.960 ], "heli_params": [ -2.967, -0.183, 2.853, 9.841, -15.783, 30.483 ], "bp2_params": [ -0.056, 0.511, -1.076, 27.206, -6.393, 9.565 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.943, "simple_Twist": 30.910, "simple_hRise": 2.867, "simple_hTwist": 32.337 }, { "index": 7, "nt1": "///A/1827", "nt2": "///A/1850", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 114, "helix_index": 60, "strand1": "GCC", "strand2": "CGG", "bp_type": "|||", "helix_form": ".A", "helical_rise": 2.348, "helical_rise_std": 0.269, "helical_radius": 10.501, "helical_radius_std": 0.638, "helical_axis": [ -0.612, -0.269, -0.744 ], "point1": [ 209.676, 224.708, 191.254 ], "point2": [ 206.829, 223.455, 187.790 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/1833", "nt2": "///A/1842", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.216, -0.162, -0.314, -7.288, -2.765, -1.080 ], "step_params": [ 1.363, -1.852, 3.056, 2.071, 0.771, 27.852 ], "heli_params": [ -4.008, -2.359, 3.096, 1.598, -4.295, 27.937 ], "bp2_params": [ 0.119, -0.135, -0.176, -0.154, 0.197, 0.266 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.056, "simple_Twist": 25.834, "simple_hRise": 3.099, "simple_hTwist": 25.926 }, { "index": 2, "nt1": "///A/1834", "nt2": "///A/1841", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.119, -0.135, -0.176, -0.154, 0.197, 0.266 ], "step_params": [ 0.092, -2.188, 3.278, -1.644, 13.298, 28.184 ], "heli_params": [ -6.253, -0.440, 2.053, 25.561, 3.159, 31.149 ], "bp2_params": [ 0.285, -0.133, 0.242, 2.762, 18.970, 3.844 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.278, "simple_Twist": 27.728, "simple_hRise": 2.031, "simple_hTwist": 30.739 }, { "index": 3, "nt1": "///A/1835", "nt2": "///A/1840", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 115, "helix_index": 61, "strand1": "CU", "strand2": "GA", "bp_type": "||", "helix_form": "A", "helical_rise": 3.092, "helical_rise_std": 0.021, "helical_radius": 8.719, "helical_radius_std": 1.056, "helical_axis": [ 0.043, 0.635, -0.772 ], "point1": [ 249.015, 202.300, 163.307 ], "point2": [ 249.148, 204.263, 160.921 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1872", "nt2": "///A/1926", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.201, -0.317, -0.932, -6.932, 0.760, 0.603 ], "step_params": [ -0.069, -1.196, 3.293, -0.722, 3.525, 30.335 ], "heli_params": [ -2.961, -0.010, 3.137, 6.706, 1.373, 30.543 ], "bp2_params": [ 0.021, -0.184, -0.266, -1.813, 4.300, 1.945 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.293, "simple_Twist": 31.657, "simple_hRise": 3.145, "simple_hTwist": 31.856 }, { "index": 2, "nt1": "///A/1873", "nt2": "///A/1925", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 116, "helix_index": 61, "strand1": "GU", "strand2": "CG", "bp_type": "||", "helix_form": ".", "helical_rise": 2.638, "helical_rise_std": 0.012, "helical_radius": 9.144, "helical_radius_std": 1.444, "helical_axis": [ -0.263, 0.166, -0.950 ], "point1": [ 249.962, 212.225, 148.562 ], "point2": [ 249.268, 212.662, 146.055 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1879", "nt2": "///A/1921", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.350, -0.331, 1.194, 10.281, 12.467, 10.515 ], "step_params": [ -0.209, -0.847, 2.807, 4.652, 9.774, 33.691 ], "heli_params": [ -2.579, 0.908, 2.426, 16.347, -7.780, 35.339 ], "bp2_params": [ 0.782, -0.563, 0.434, 29.237, 9.526, 13.061 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.807, "simple_Twist": 26.103, "simple_hRise": 2.278, "simple_hTwist": 28.222 }, { "index": 2, "nt1": "///A/1880", "nt2": "///A/1920", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 117, "helix_index": 62, "strand1": "GA", "strand2": "UU", "bp_type": "||", "helix_form": ".", "helical_rise": 2.979, "helical_rise_std": 0.003, "helical_radius": 9.978, "helical_radius_std": 0.968, "helical_axis": [ -0.349, 0.202, -0.915 ], "point1": [ 244.980, 207.632, 131.815 ], "point2": [ 243.940, 208.235, 129.090 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/1884", "nt2": "///A/1916", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.382, -0.524, 0.151, 3.420, 5.807, -17.059 ], "step_params": [ 0.865, -0.863, 3.106, 2.435, 5.763, 44.969 ], "heli_params": [ -1.598, -0.918, 3.019, 7.491, -3.165, 45.380 ], "bp2_params": [ 0.079, -0.204, -0.252, 2.978, -0.099, 2.222 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.106, "simple_Twist": 37.468, "simple_hRise": 2.994, "simple_hTwist": 37.968 }, { "index": 2, "nt1": "///A/1885", "nt2": "///A/1915", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 118, "helix_index": 21, "strand1": "ACCUG", "strand2": "UGGAC", "bp_type": "|||||", "helix_form": "AAAA", "helical_rise": 2.696, "helical_rise_std": 0.184, "helical_radius": 8.855, "helical_radius_std": 0.392, "helical_axis": [ 0.684, 0.600, -0.415 ], "point1": [ 162.741, 135.396, 182.116 ], "point2": [ 170.064, 141.818, 177.677 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/2052", "nt2": "///A/2069", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.038, -0.083, 0.005, -1.893, 0.552, -0.428 ], "step_params": [ 0.082, -1.661, 3.145, -1.640, 0.619, 35.591 ], "heli_params": [ -2.801, -0.361, 3.110, 1.012, 2.681, 35.633 ], "bp2_params": [ 0.178, -0.128, 0.207, 1.720, 1.139, 1.926 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.145, "simple_Twist": 34.689, "simple_hRise": 3.109, "simple_hTwist": 34.732 }, { "index": 2, "nt1": "///A/2053", "nt2": "///A/2068", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.178, -0.128, 0.207, 1.720, 1.139, 1.926 ], "step_params": [ -0.437, -1.709, 3.331, -2.560, 3.611, 31.901 ], "heli_params": [ -3.723, 0.333, 3.148, 6.530, 4.630, 32.198 ], "bp2_params": [ 0.188, -0.280, 0.762, -0.383, 2.402, -0.224 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.331, "simple_Twist": 32.015, "simple_hRise": 3.149, "simple_hTwist": 32.311 }, { "index": 3, "nt1": "///A/2054", "nt2": "///A/2067", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.188, -0.280, 0.762, -0.383, 2.402, -0.224 ], "step_params": [ 0.056, -1.407, 3.175, 2.320, 4.073, 31.320 ], "heli_params": [ -3.288, 0.301, 2.969, 7.491, -4.268, 31.660 ], "bp2_params": [ 0.019, -0.208, 0.838, 1.513, 1.955, -2.152 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.175, "simple_Twist": 32.636, "simple_hRise": 2.979, "simple_hTwist": 32.962 }, { "index": 4, "nt1": "///A/2055", "nt2": "///A/2066", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.019, -0.208, 0.838, 1.513, 1.955, -2.152 ], "step_params": [ 0.925, -1.947, 3.402, 10.399, 18.422, 35.427 ], "heli_params": [ -4.673, -0.247, 2.332, 27.465, -15.504, 41.088 ], "bp2_params": [ -0.203, -0.113, -0.586, -10.615, -7.086, -0.254 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.402, "simple_Twist": 35.952, "simple_hRise": 2.350, "simple_hTwist": 41.536 }, { "index": 5, "nt1": "///A/2056", "nt2": "///A/2065", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 119, "helix_index": 81, "strand1": "CCCGCGAC", "strand2": "GGGCGCUG", "bp_type": "||||||||", "helix_form": "AA.AA..", "helical_rise": 2.845, "helical_rise_std": 0.437, "helical_radius": 9.877, "helical_radius_std": 0.836, "helical_axis": [ 0.467, 0.841, -0.275 ], "point1": [ 161.726, 130.552, 206.439 ], "point2": [ 170.994, 147.231, 200.990 ], "num_pairs": 8, "pairs": [ { "index": 1, "nt1": "///A/2072", "nt2": "///A/2654", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.156, -0.119, -0.434, 7.230, 0.057, -1.325 ], "step_params": [ -0.711, -2.147, 3.255, -7.511, 6.190, 38.051 ], "heli_params": [ -3.912, 0.193, 2.966, 9.310, 11.296, 39.231 ], "bp2_params": [ 0.167, -0.191, 0.061, 2.621, 2.218, -0.396 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.255, "simple_Twist": 37.831, "simple_hRise": 2.963, "simple_hTwist": 39.019 }, { "index": 2, "nt1": "///A/2073", "nt2": "///A/2653", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.167, -0.191, 0.061, 2.621, 2.218, -0.396 ], "step_params": [ 0.214, -1.947, 3.281, 3.528, 2.105, 34.583 ], "heli_params": [ -3.571, 0.173, 3.167, 3.525, -5.909, 34.819 ], "bp2_params": [ 0.200, -0.154, 0.003, 3.393, 3.571, -1.427 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.281, "simple_Twist": 34.668, "simple_hRise": 3.167, "simple_hTwist": 34.903 }, { "index": 3, "nt1": "///A/2074", "nt2": "///A/2652", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.200, -0.154, 0.003, 3.393, 3.571, -1.427 ], "step_params": [ 0.389, -2.799, 3.262, -4.909, -4.621, 19.074 ], "heli_params": [ -5.691, -3.534, 3.619, -13.413, 14.250, 20.220 ], "bp2_params": [ -0.240, -0.291, 0.992, 7.716, 3.330, 0.449 ], "groove_widths": [ 16.474, null, 19.850, null ], "simple_Rise": 3.262, "simple_Twist": 21.050, "simple_hRise": 3.603, "simple_hTwist": 22.092 }, { "index": 4, "nt1": "///A/2075", "nt2": "///A/2651", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.240, -0.291, 0.992, 7.716, 3.330, 0.449 ], "step_params": [ -0.235, -1.981, 3.301, 1.804, 1.983, 37.211 ], "heli_params": [ -3.357, 0.604, 3.180, 3.102, -2.822, 37.304 ], "bp2_params": [ 0.165, -0.187, 0.371, 4.777, -1.850, -0.522 ], "groove_widths": [ 16.816, 15.526, 19.694, 17.690 ], "simple_Rise": 3.301, "simple_Twist": 35.250, "simple_hRise": 3.173, "simple_hTwist": 35.348 }, { "index": 5, "nt1": "///A/2076", "nt2": "///A/2650", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.165, -0.187, 0.371, 4.777, -1.850, -0.522 ], "step_params": [ -0.428, -1.893, 3.112, -1.355, 16.585, 29.643 ], "heli_params": [ -5.410, 0.557, 1.842, 29.658, 2.423, 33.902 ], "bp2_params": [ -0.260, -0.151, 0.171, -5.713, 3.505, 2.763 ], "groove_widths": [ 17.309, null, 17.150, null ], "simple_Rise": 3.112, "simple_Twist": 31.881, "simple_hRise": 1.939, "simple_hTwist": 35.862 }, { "index": 6, "nt1": "///A/2077", "nt2": "///A/2649", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.260, -0.151, 0.171, -5.713, 3.505, 2.763 ], "step_params": [ -0.270, -2.045, 3.751, 2.621, 18.006, 32.900 ], "heli_params": [ -5.535, 0.763, 2.333, 29.180, -4.248, 37.475 ], "bp2_params": [ 0.060, -0.086, -0.972, -18.622, -12.110, -2.396 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.751, "simple_Twist": 30.485, "simple_hRise": 2.209, "simple_hTwist": 35.392 }, { "index": 7, "nt1": "///A/2078", "nt2": "///A/2648", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.060, -0.086, -0.972, -18.622, -12.110, -2.396 ], "step_params": [ -0.553, -1.367, 3.459, -9.509, 0.683, 34.870 ], "heli_params": [ -2.309, -0.557, 3.460, 1.114, 15.512, 36.111 ], "bp2_params": [ 0.177, -0.067, -0.096, -18.692, 0.843, -0.325 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.459, "simple_Twist": 34.948, "simple_hRise": 3.460, "simple_hTwist": 36.186 }, { "index": 8, "nt1": "///A/2079", "nt2": "///A/2647", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 120, "helix_index": 81, "strand1": "GGA", "strand2": "CCU", "bp_type": "|||", "helix_form": "AA", "helical_rise": 2.277, "helical_rise_std": 0.271, "helical_radius": 8.597, "helical_radius_std": 1.383, "helical_axis": [ 0.411, 0.820, -0.399 ], "point1": [ 173.360, 149.025, 199.216 ], "point2": [ 175.163, 152.623, 197.466 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/2081", "nt2": "///A/2646", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.191, -0.184, -0.643, -9.484, -0.827, 0.912 ], "step_params": [ -0.445, -1.626, 2.966, -1.668, 4.031, 30.008 ], "heli_params": [ -3.822, 0.556, 2.749, 7.733, 3.200, 30.316 ], "bp2_params": [ -0.158, -0.177, -0.315, -0.308, 2.057, -0.883 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.966, "simple_Twist": 29.961, "simple_hRise": 2.749, "simple_hTwist": 30.269 }, { "index": 2, "nt1": "///A/2082", "nt2": "///A/2645", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.158, -0.177, -0.315, -0.308, 2.057, -0.883 ], "step_params": [ -0.270, -1.653, 3.753, 0.704, 2.785, 36.499 ], "heli_params": [ -3.063, 0.540, 3.616, 4.437, -1.122, 36.608 ], "bp2_params": [ 0.167, -0.122, 0.759, 1.491, -0.629, -3.044 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.753, "simple_Twist": 34.872, "simple_hRise": 3.608, "simple_hTwist": 34.987 }, { "index": 3, "nt1": "///A/2083", "nt2": "///A/2644", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 121, "helix_index": 81, "strand1": "GG", "strand2": "CC", "bp_type": "||", "helix_form": ".", "helical_rise": 3.553, "helical_rise_std": 0.058, "helical_radius": 9.224, "helical_radius_std": 1.672, "helical_axis": [ 0.083, 0.821, -0.564 ], "point1": [ 181.964, 157.455, 194.126 ], "point2": [ 182.259, 160.368, 192.123 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/2085", "nt2": "///A/2641", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.233, -0.180, -0.565, -6.647, -3.088, 0.261 ], "step_params": [ -0.672, -0.984, 3.650, -3.048, 1.154, 30.958 ], "heli_params": [ -2.081, 0.600, 3.659, 2.154, 5.690, 31.125 ], "bp2_params": [ -0.173, -0.463, -1.415, -4.964, -1.260, 3.934 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.650, "simple_Twist": 31.323, "simple_hRise": 3.659, "simple_hTwist": 31.488 }, { "index": 2, "nt1": "///A/2086", "nt2": "///A/2640", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 122, "helix_index": 64, "strand1": "GG", "strand2": "CC", "bp_type": "||", "helix_form": "A", "helical_rise": 2.068, "helical_rise_std": 0.005, "helical_radius": 8.656, "helical_radius_std": 1.787, "helical_axis": [ 0.423, 0.810, -0.407 ], "point1": [ 189.437, 183.359, 173.004 ], "point2": [ 190.310, 185.034, 172.162 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/2098", "nt2": "///A/2471", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.213, -0.213, 0.668, 4.233, 2.497, 0.491 ], "step_params": [ -0.069, -1.858, 3.453, 5.297, 24.151, 37.789 ], "heli_params": [ -4.417, 0.526, 1.957, 33.300, -7.304, 44.911 ], "bp2_params": [ -0.216, -0.165, -0.494, -14.072, -12.175, 0.302 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.453, "simple_Twist": 37.697, "simple_hRise": 1.953, "simple_hTwist": 44.835 }, { "index": 2, "nt1": "///A/2099", "nt2": "///A/2470", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 123, "helix_index": 64, "strand1": "AGCU", "strand2": "UCGA", "bp_type": "||||", "helix_form": "...", "helical_rise": 3.148, "helical_rise_std": 0.204, "helical_radius": 9.463, "helical_radius_std": 1.615, "helical_axis": [ 0.583, 0.799, -0.149 ], "point1": [ 192.279, 188.226, 171.648 ], "point2": [ 197.833, 195.837, 170.225 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/2100", "nt2": "///A/2467", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.570, 0.482, 0.561, -12.002, 0.516, 23.676 ], "step_params": [ -0.850, -1.019, 2.964, -4.806, 4.241, 39.151 ], "heli_params": [ -1.951, 0.744, 2.923, 6.277, 7.114, 39.652 ], "bp2_params": [ -0.141, -0.307, 0.985, -4.415, 3.235, 4.087 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.964, "simple_Twist": 25.758, "simple_hRise": 2.871, "simple_hTwist": 26.530 }, { "index": 2, "nt1": "///A/2101", "nt2": "///A/2466", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.141, -0.307, 0.985, -4.415, 3.235, 4.087 ], "step_params": [ 0.735, -1.284, 2.710, -5.912, 3.942, 31.941 ], "heli_params": [ -2.815, -2.109, 2.369, 7.055, 10.580, 32.702 ], "bp2_params": [ 0.290, -0.222, 1.243, 15.532, -1.225, 16.043 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.710, "simple_Twist": 29.137, "simple_hRise": 2.329, "simple_hTwist": 29.973 }, { "index": 3, "nt1": "///A/2102", "nt2": "///A/2465", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.290, -0.222, 1.243, 15.532, -1.225, 16.043 ], "step_params": [ -0.281, 0.660, 2.076, 21.791, 6.534, 32.674 ], "heli_params": [ 0.489, 2.032, 1.678, 10.217, -34.074, 39.635 ], "bp2_params": [ 0.875, 0.280, -0.918, 58.636, -28.928, 21.128 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.076, "simple_Twist": 32.719, "simple_hRise": 1.679, "simple_hTwist": 39.672 }, { "index": 4, "nt1": "///A/2103", "nt2": "///A/2464", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 124, "helix_index": 65, "strand1": "ACUGC", "strand2": "UGACG", "bp_type": "|||||", "helix_form": "....", "helical_rise": 3.377, "helical_rise_std": 0.334, "helical_radius": 9.493, "helical_radius_std": 0.825, "helical_axis": [ 0.439, 0.892, 0.111 ], "point1": [ 195.401, 196.307, 167.588 ], "point2": [ 201.326, 208.336, 169.082 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/2106", "nt2": "///A/2272", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.113, -0.219, 0.318, -15.654, -28.157, -16.901 ], "step_params": [ -1.314, -0.953, 3.464, -5.469, -4.873, 21.050 ], "heli_params": [ -0.378, 1.055, 3.801, -12.847, 14.418, 22.275 ], "bp2_params": [ 0.218, -0.021, -0.132, -18.427, -19.928, 9.994 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.464, "simple_Twist": 20.194, "simple_hRise": 3.806, "simple_hTwist": 21.468 }, { "index": 2, "nt1": "///A/2107", "nt2": "///A/2271", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.218, -0.021, -0.132, -18.427, -19.928, 9.994 ], "step_params": [ -1.455, 0.271, 3.409, -6.316, -1.010, 31.843 ], "heli_params": [ 0.676, 1.401, 3.613, -1.819, 11.368, 32.463 ], "bp2_params": [ 0.044, -0.174, -0.390, -6.419, -14.780, 2.569 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.409, "simple_Twist": 33.674, "simple_hRise": 3.605, "simple_hTwist": 34.258 }, { "index": 3, "nt1": "///A/2108", "nt2": "///A/2270", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.044, -0.174, -0.390, -6.419, -14.780, 2.569 ], "step_params": [ -0.675, -1.142, 3.772, -8.394, 9.816, 22.757 ], "heli_params": [ -5.528, -1.073, 3.084, 22.683, 19.395, 26.125 ], "bp2_params": [ -0.163, -0.281, -1.070, -11.300, -3.271, 1.697 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.772, "simple_Twist": 23.631, "simple_hRise": 3.119, "simple_hTwist": 26.886 }, { "index": 4, "nt1": "///A/2109", "nt2": "///A/2269", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.163, -0.281, -1.070, -11.300, -3.271, 1.697 ], "step_params": [ 0.215, -1.301, 2.901, -6.786, 6.932, 30.250 ], "heli_params": [ -3.446, -1.438, 2.446, 12.874, 12.602, 31.733 ], "bp2_params": [ 0.171, -0.213, -0.604, 2.612, -8.459, 3.486 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.901, "simple_Twist": 28.348, "simple_hRise": 2.408, "simple_hTwist": 29.930 }, { "index": 5, "nt1": "///A/2110", "nt2": "///A/2268", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 125, "helix_index": 65, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": ".", "helical_rise": 2.418, "helical_rise_std": 0.050, "helical_radius": 9.398, "helical_radius_std": 1.921, "helical_axis": [ 0.383, 0.850, 0.361 ], "point1": [ 202.380, 219.494, 168.790 ], "point2": [ 203.308, 221.554, 169.665 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/2113", "nt2": "///A/2264", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.097, -0.335, -0.859, -3.131, 3.970, -3.472 ], "step_params": [ 0.040, -1.802, 2.889, -8.224, 6.073, 30.572 ], "heli_params": [ -4.150, -1.292, 2.405, 11.133, 15.077, 32.197 ], "bp2_params": [ 0.235, -0.138, -0.036, 10.286, 2.578, 2.920 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.889, "simple_Twist": 29.585, "simple_hRise": 2.384, "simple_hTwist": 31.265 }, { "index": 2, "nt1": "///A/2114", "nt2": "///A/2263", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 126, "helix_index": 65, "strand1": "GAUAU", "strand2": "CUGUG", "bp_type": "|||||", "helix_form": "....", "helical_rise": 1.924, "helical_rise_std": 0.502, "helical_radius": 8.720, "helical_radius_std": 0.861, "helical_axis": [ 0.455, 0.890, -0.031 ], "point1": [ 206.032, 229.373, 171.457 ], "point2": [ 209.407, 235.969, 171.225 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/2116", "nt2": "///A/2261", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.118, -0.325, -1.116, -17.347, 0.123, -0.787 ], "step_params": [ -0.007, -1.499, 3.293, -3.126, 1.808, 32.429 ], "heli_params": [ -2.980, -0.528, 3.194, 3.224, 5.575, 32.624 ], "bp2_params": [ 0.112, -0.172, -0.952, -11.497, 12.406, -5.318 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.293, "simple_Twist": 30.867, "simple_hRise": 3.187, "simple_hTwist": 31.072 }, { "index": 2, "nt1": "///A/2117", "nt2": "///A/2260", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.112, -0.172, -0.952, -11.497, 12.406, -5.318 ], "step_params": [ 1.274, -1.430, 3.018, -2.315, 5.722, 40.237 ], "heli_params": [ -2.616, -2.059, 2.723, 8.259, 3.341, 40.688 ], "bp2_params": [ 2.013, 0.018, -0.357, 10.240, 15.880, 12.140 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.018, "simple_Twist": 29.357, "simple_hRise": 2.593, "simple_hTwist": 29.985 }, { "index": 3, "nt1": "///A/2118", "nt2": "///A/2259", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 2.013, 0.018, -0.357, 10.240, 15.880, 12.140 ], "step_params": [ -0.342, -1.493, 3.752, 16.124, 39.749, 33.453 ], "heli_params": [ -4.046, 1.350, 1.214, 49.829, -20.213, 53.907 ], "bp2_params": [ 0.068, -0.351, -1.528, -12.403, -6.381, 3.330 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.752, "simple_Twist": 44.259, "simple_hRise": 1.779, "simple_hTwist": 60.873 }, { "index": 4, "nt1": "///A/2119", "nt2": "///A/2258", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.068, -0.351, -1.528, -12.403, -6.381, 3.330 ], "step_params": [ -0.988, -1.002, 3.101, -3.148, 0.595, 34.294 ], "heli_params": [ -1.782, 1.199, 3.159, 1.007, 5.325, 34.439 ], "bp2_params": [ 1.930, -0.608, -0.941, 0.115, -1.280, -13.064 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.101, "simple_Twist": 24.613, "simple_hRise": 3.176, "simple_hTwist": 24.817 }, { "index": 5, "nt1": "///A/2120", "nt2": "///A/2257", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 127, "helix_index": 46, "strand1": "GU", "strand2": "CA", "bp_type": "||", "helix_form": "A", "helical_rise": 3.119, "helical_rise_std": 0.009, "helical_radius": 8.629, "helical_radius_std": 1.175, "helical_axis": [ 0.048, 0.087, -0.995 ], "point1": [ 220.875, 250.900, 164.128 ], "point2": [ 221.025, 251.171, 161.025 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/2126", "nt2": "///A/2221", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.145, -0.199, -0.552, -1.611, 3.483, 0.332 ], "step_params": [ 0.803, -1.640, 3.166, 2.002, 2.912, 39.234 ], "heli_params": [ -2.762, -0.965, 3.077, 4.326, -2.974, 39.386 ], "bp2_params": [ -0.001, -0.249, -0.631, -0.739, -0.137, 3.592 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.166, "simple_Twist": 38.135, "simple_hRise": 3.074, "simple_hTwist": 38.293 }, { "index": 2, "nt1": "///A/2127", "nt2": "///A/2220", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 128, "helix_index": 46, "strand1": "GUACAGCU", "strand2": "UAUGUCGG", "bp_type": "||||||||", "helix_form": "...AAA.", "helical_rise": 2.702, "helical_rise_std": 0.331, "helical_radius": 9.087, "helical_radius_std": 0.646, "helical_axis": [ 0.024, 0.012, -1.000 ], "point1": [ 218.665, 254.117, 152.635 ], "point2": [ 219.115, 254.337, 133.711 ], "num_pairs": 8, "pairs": [ { "index": 1, "nt1": "///A/2130", "nt2": "///A/2217", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.845, -0.609, -0.496, -6.699, 1.235, 3.652 ], "step_params": [ 0.938, -1.265, 2.927, -2.857, 3.031, 40.881 ], "heli_params": [ -2.090, -1.606, 2.762, 4.326, 4.078, 41.084 ], "bp2_params": [ -0.007, -0.096, -0.173, 3.136, -0.718, 1.706 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.927, "simple_Twist": 35.875, "simple_hRise": 2.735, "simple_hTwist": 36.108 }, { "index": 2, "nt1": "///A/2131", "nt2": "///A/2216", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.007, -0.096, -0.173, 3.136, -0.718, 1.706 ], "step_params": [ -0.035, -1.050, 3.170, 2.429, 20.943, 28.403 ], "heli_params": [ -4.456, 0.374, 1.956, 36.934, -4.283, 35.243 ], "bp2_params": [ 0.015, -0.209, -0.515, -4.730, -8.526, 6.628 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.170, "simple_Twist": 28.388, "simple_hRise": 1.955, "simple_hTwist": 35.231 }, { "index": 3, "nt1": "///A/2132", "nt2": "///A/2215", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.015, -0.209, -0.515, -4.730, -8.526, 6.628 ], "step_params": [ -0.372, -1.553, 3.031, -0.458, -0.084, 38.321 ], "heli_params": [ -2.356, 0.513, 3.039, -0.127, 0.697, 38.323 ], "bp2_params": [ 0.156, -0.183, -0.434, -2.492, -3.608, 3.016 ], "groove_widths": [ 16.386, null, 16.153, null ], "simple_Rise": 3.031, "simple_Twist": 37.222, "simple_hRise": 3.039, "simple_hTwist": 37.224 }, { "index": 4, "nt1": "///A/2133", "nt2": "///A/2214", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.156, -0.183, -0.434, -2.492, -3.608, 3.016 ], "step_params": [ -0.252, -1.070, 2.912, -4.849, 13.682, 26.196 ], "heli_params": [ -4.409, -0.339, 2.118, 27.649, 9.799, 29.888 ], "bp2_params": [ -0.057, -0.256, -0.029, 0.049, 0.222, 3.277 ], "groove_widths": [ 17.034, 15.676, 15.159, 13.181 ], "simple_Rise": 2.912, "simple_Twist": 27.473, "simple_hRise": 2.163, "simple_hTwist": 31.007 }, { "index": 5, "nt1": "///A/2134", "nt2": "///A/2213", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.057, -0.256, -0.029, 0.049, 0.222, 3.277 ], "step_params": [ -0.232, -1.575, 3.112, 0.722, 4.987, 31.683 ], "heli_params": [ -3.671, 0.539, 2.831, 9.062, -1.313, 32.071 ], "bp2_params": [ -0.134, -0.191, -0.418, -0.111, 2.578, 1.160 ], "groove_widths": [ 17.147, null, 17.487, null ], "simple_Rise": 3.112, "simple_Twist": 32.799, "simple_hRise": 2.842, "simple_hTwist": 33.174 }, { "index": 6, "nt1": "///A/2135", "nt2": "///A/2212", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.134, -0.191, -0.418, -0.111, 2.578, 1.160 ], "step_params": [ 0.283, -1.670, 3.091, -0.116, 4.025, 36.153 ], "heli_params": [ -3.190, -0.469, 2.894, 6.461, 0.186, 36.370 ], "bp2_params": [ 0.225, -0.207, -0.347, 2.206, 2.478, 1.168 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.091, "simple_Twist": 33.829, "simple_hRise": 2.878, "simple_hTwist": 34.061 }, { "index": 7, "nt1": "///A/2136", "nt2": "///A/2211", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.225, -0.207, -0.347, 2.206, 2.478, 1.168 ], "step_params": [ 0.477, -1.879, 2.984, -1.338, 5.334, 27.664 ], "heli_params": [ -4.922, -1.247, 2.558, 11.018, 2.763, 28.195 ], "bp2_params": [ 1.279, -0.434, 0.062, 6.877, -3.547, 13.594 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.984, "simple_Twist": 21.115, "simple_hRise": 2.406, "simple_hTwist": 21.811 }, { "index": 8, "nt1": "///A/2137", "nt2": "///A/2210", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 129, "helix_index": 46, "strand1": "GGU", "strand2": "CCA", "bp_type": "|||", "helix_form": "..", "helical_rise": 1.855, "helical_rise_std": 0.212, "helical_radius": 8.670, "helical_radius_std": 2.127, "helical_axis": [ -0.117, -0.309, -0.944 ], "point1": [ 216.875, 253.588, 124.183 ], "point2": [ 216.460, 252.494, 120.843 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/2149", "nt2": "///A/2207", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.107, -0.226, -0.180, 2.833, 4.730, -0.626 ], "step_params": [ -2.149, -1.943, 2.971, -2.970, 11.826, 33.104 ], "heli_params": [ -4.686, 3.181, 2.340, 19.933, 5.006, 35.219 ], "bp2_params": [ -0.090, -0.203, -0.455, 11.352, 10.659, -2.120 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.971, "simple_Twist": 33.178, "simple_hRise": 2.341, "simple_hTwist": 35.288 }, { "index": 2, "nt1": "///A/2150", "nt2": "///A/2206", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.090, -0.203, -0.455, 11.352, 10.659, -2.120 ], "step_params": [ 0.055, 0.092, 2.330, 28.112, 14.549, 32.940 ], "heli_params": [ -0.837, 1.776, 1.774, 20.682, -39.962, 45.378 ], "bp2_params": [ 0.882, 0.096, -3.100, 77.881, 15.956, 7.679 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.330, "simple_Twist": 23.001, "simple_hRise": 1.466, "simple_hTwist": 38.955 }, { "index": 3, "nt1": "///A/2151", "nt2": "///A/2205", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 130, "helix_index": 66, "strand1": "GC", "strand2": "CG", "bp_type": "||", "helix_form": ".", "helical_rise": 3.189, "helical_rise_std": 0.045, "helical_radius": 10.620, "helical_radius_std": 1.781, "helical_axis": [ -0.168, 0.775, 0.609 ], "point1": [ 226.636, 271.247, 102.556 ], "point2": [ 226.101, 273.718, 104.499 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/2156", "nt2": "///A/2190", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.041, -0.414, -1.296, -5.996, 4.403, -2.874 ], "step_params": [ 1.874, -0.470, 3.404, -4.081, 7.514, 25.145 ], "heli_params": [ -2.961, -5.134, 2.814, 16.656, 9.045, 26.537 ], "bp2_params": [ 0.185, -0.143, -0.309, 7.930, 6.521, 0.357 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.404, "simple_Twist": 23.614, "simple_hRise": 2.767, "simple_hTwist": 25.093 }, { "index": 2, "nt1": "///A/2157", "nt2": "///A/2189", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 131, "helix_index": 68, "strand1": "GC", "strand2": "CG", "bp_type": "||", "helix_form": ".", "helical_rise": 0.345, "helical_rise_std": 0.074, "helical_axis": [ -0.104, -0.694, 0.712 ], "point1": [ null, null, null ], "point2": [ null, null, null ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/2171", "nt2": "///A/2178", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.002, -0.535, 1.465, 6.284, -6.865, -2.848 ], "step_params": [ 2.831, -1.954, 3.028, 0.698, -7.398, 8.115 ], "heli_params": [ 3.421, -13.484, 3.727, -42.359, -3.994, 10.999 ], "bp2_params": [ 0.215, -0.316, 0.914, 16.166, 2.652, 5.180 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.028, "simple_Twist": 6.174, "simple_hRise": 3.636, "simple_hTwist": 9.659 }, { "index": 2, "nt1": "///A/2172", "nt2": "///A/2177", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 132, "helix_index": 46, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": ".", "helical_rise": 2.556, "helical_rise_std": 0.023, "helical_radius": 9.560, "helical_radius_std": 0.889, "helical_axis": [ -0.688, -0.245, 0.683 ], "point1": [ 212.384, 248.154, 189.162 ], "point2": [ 210.625, 247.530, 190.907 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/2230", "nt2": "///A/2251", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.123, -0.205, 0.761, -2.533, 2.318, 1.130 ], "step_params": [ -0.078, -1.733, 2.913, 0.562, 6.410, 32.457 ], "heli_params": [ -3.955, 0.216, 2.532, 11.330, -0.993, 33.072 ], "bp2_params": [ 0.153, -0.230, 0.713, 5.576, 3.405, 2.774 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.913, "simple_Twist": 32.221, "simple_hRise": 2.529, "simple_hTwist": 32.841 }, { "index": 2, "nt1": "///A/2231", "nt2": "///A/2250", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 133, "helix_index": 46, "strand1": "CCGCCC", "strand2": "GGCGGG", "bp_type": "||||||", "helix_form": "AAAAA", "helical_rise": 2.618, "helical_rise_std": 0.162, "helical_radius": 9.315, "helical_radius_std": 0.537, "helical_axis": [ -0.432, -0.254, 0.865 ], "point1": [ 209.589, 245.274, 194.931 ], "point2": [ 203.966, 241.970, 206.180 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/2233", "nt2": "///A/2249", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.147, -0.328, 0.846, 3.684, -1.454, -0.585 ], "step_params": [ -0.786, -1.872, 3.006, -4.713, 2.843, 33.344 ], "heli_params": [ -3.642, 0.656, 2.921, 4.914, 8.144, 33.783 ], "bp2_params": [ 0.163, -0.467, 1.027, 5.754, -5.953, -4.458 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.006, "simple_Twist": 33.597, "simple_hRise": 2.922, "simple_hTwist": 34.032 }, { "index": 2, "nt1": "///A/2234", "nt2": "///A/2248", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.163, -0.467, 1.027, 5.754, -5.953, -4.458 ], "step_params": [ -0.463, -2.537, 2.920, 0.748, 9.999, 30.657 ], "heli_params": [ -5.948, 0.936, 2.003, 18.307, -1.369, 32.218 ], "bp2_params": [ -0.158, -0.210, 0.354, 0.828, 4.905, -1.075 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.920, "simple_Twist": 32.108, "simple_hRise": 2.049, "simple_hTwist": 33.598 }, { "index": 3, "nt1": "///A/2235", "nt2": "///A/2247", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.158, -0.210, 0.354, 0.828, 4.905, -1.075 ], "step_params": [ -0.456, -1.804, 3.273, 0.873, 2.356, 35.095 ], "heli_params": [ -3.329, 0.881, 3.137, 3.901, -1.445, 35.182 ], "bp2_params": [ 0.207, -0.129, -0.102, 3.859, 7.435, 0.653 ], "groove_widths": [ 17.443, null, 15.313, null ], "simple_Rise": 3.273, "simple_Twist": 32.967, "simple_hRise": 3.127, "simple_hTwist": 33.060 }, { "index": 4, "nt1": "///A/2236", "nt2": "///A/2246", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.207, -0.129, -0.102, 3.859, 7.435, 0.653 ], "step_params": [ 0.231, -1.722, 2.958, 2.110, 4.891, 34.108 ], "heli_params": [ -3.563, -0.104, 2.701, 8.276, -3.570, 34.509 ], "bp2_params": [ 0.143, -0.132, -0.403, 13.702, 5.398, 1.657 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.958, "simple_Twist": 34.175, "simple_hRise": 2.702, "simple_hTwist": 34.575 }, { "index": 5, "nt1": "///A/2237", "nt2": "///A/2245", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.143, -0.132, -0.403, 13.702, 5.398, 1.657 ], "step_params": [ -0.169, -1.715, 3.199, 6.991, 2.382, 28.482 ], "heli_params": [ -3.864, 1.760, 2.926, 4.741, -13.916, 29.404 ], "bp2_params": [ 0.155, -0.100, -0.808, 23.698, -2.812, -2.296 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.199, "simple_Twist": 29.012, "simple_hRise": 2.932, "simple_hTwist": 29.918 }, { "index": 6, "nt1": "///A/2238", "nt2": "///A/2244", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 134, "helix_index": 69, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": ".", "helical_rise": 3.259, "helical_rise_std": 0.085, "helical_radius": 9.080, "helical_radius_std": 0.810, "helical_axis": [ -0.748, -0.632, -0.202 ], "point1": [ 199.524, 176.277, 131.238 ], "point2": [ 197.088, 174.221, 130.581 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/2289", "nt2": "///A/2309", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.145, -0.151, 0.030, 0.408, 0.364, 0.196 ], "step_params": [ -0.368, -1.105, 3.251, -6.927, -0.811, 34.433 ], "heli_params": [ -1.710, -0.436, 3.285, -1.353, 11.554, 35.111 ], "bp2_params": [ 0.118, -0.254, 0.709, -0.801, -5.995, -2.453 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.251, "simple_Twist": 34.745, "simple_hRise": 3.285, "simple_hTwist": 35.417 }, { "index": 2, "nt1": "///A/2290", "nt2": "///A/2308", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 135, "helix_index": 72, "strand1": "CU", "strand2": "GA", "bp_type": "||", "helix_form": ".", "helical_rise": 2.721, "helical_rise_std": 0.036, "helical_radius": 10.305, "helical_radius_std": 0.883, "helical_axis": [ -0.454, 0.115, 0.884 ], "point1": [ 179.255, 195.820, 105.093 ], "point2": [ 178.020, 196.133, 107.497 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/2376", "nt2": "///A/2399", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.174, -0.286, -0.512, -1.318, 4.676, -1.984 ], "step_params": [ 0.335, -1.165, 2.945, 0.492, 5.353, 28.947 ], "heli_params": [ -3.288, -0.567, 2.695, 10.594, -0.974, 29.432 ], "bp2_params": [ -0.022, -0.186, -0.496, 1.668, -0.296, -1.989 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.945, "simple_Twist": 30.703, "simple_hRise": 2.712, "simple_hTwist": 31.159 }, { "index": 2, "nt1": "///A/2377", "nt2": "///A/2398", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 136, "helix_index": 73, "strand1": "AC", "strand2": "UG", "bp_type": "||", "helix_form": ".", "helical_rise": 2.792, "helical_rise_std": 0.024, "helical_radius": 12.006, "helical_radius_std": 1.680, "helical_axis": [ -0.363, -0.545, 0.756 ], "point1": [ 167.783, 187.960, 122.990 ], "point2": [ 166.771, 186.442, 125.098 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/2383", "nt2": "///A/2392", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.534, -0.311, -2.468, -40.854, -3.582, -8.377 ], "step_params": [ 1.181, -1.251, 3.475, -14.215, 4.530, 15.554 ], "heli_params": [ -4.959, -8.215, 1.481, 13.378, 41.977, 21.521 ], "bp2_params": [ 0.189, -0.194, -0.656, -30.560, 9.858, -3.872 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.475, "simple_Twist": 18.226, "simple_hRise": 1.754, "simple_hTwist": 23.514 }, { "index": 2, "nt1": "///A/2384", "nt2": "///A/2391", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 137, "helix_index": 76, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": "A", "helical_rise": 1.807, "helical_rise_std": 0.009, "helical_radius": 8.868, "helical_radius_std": 0.892, "helical_axis": [ -0.581, 0.800, -0.149 ], "point1": [ 181.061, 224.217, 127.617 ], "point2": [ 180.011, 225.662, 127.347 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///A/2432", "nt2": "///A/2443", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.028, -0.268, -0.907, -10.439, -2.692, -3.174 ], "step_params": [ 0.567, -2.069, 2.982, -1.425, 13.034, 28.658 ], "heli_params": [ -5.709, -1.253, 1.858, 24.761, 2.707, 31.458 ], "bp2_params": [ 0.160, -0.190, -0.185, -4.834, 14.180, -0.327 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.982, "simple_Twist": 27.657, "simple_hRise": 1.813, "simple_hTwist": 30.553 }, { "index": 2, "nt1": "///A/2433", "nt2": "///A/2442", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 138, "helix_index": 79, "strand1": "AUCGC", "strand2": "UGGCG", "bp_type": "|||||", "helix_form": "....", "helical_rise": 3.472, "helical_rise_std": 0.275, "helical_radius": 10.095, "helical_radius_std": 1.378, "helical_axis": [ 0.310, -0.930, -0.198 ], "point1": [ 192.844, 141.346, 186.818 ], "point2": [ 197.207, 128.266, 184.026 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/2542", "nt2": "///A/2600", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.257, -0.383, -1.741, -15.964, -9.679, -3.032 ], "step_params": [ -0.653, -1.353, 3.550, -7.285, -0.298, 21.978 ], "heli_params": [ -3.255, -1.210, 3.594, -0.757, 18.466, 23.142 ], "bp2_params": [ 1.071, -0.580, -1.107, -4.831, -1.766, -8.376 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.550, "simple_Twist": 17.711, "simple_hRise": 3.554, "simple_hTwist": 19.142 }, { "index": 2, "nt1": "///A/2543", "nt2": "///A/2599", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.071, -0.580, -1.107, -4.831, -1.766, -8.376 ], "step_params": [ 0.078, -1.059, 3.262, -3.909, 5.943, 34.840 ], "heli_params": [ -2.578, -0.682, 3.020, 9.800, 6.446, 35.536 ], "bp2_params": [ 0.172, -0.188, 0.031, -2.491, -7.398, 0.560 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.262, "simple_Twist": 39.981, "simple_hRise": 3.059, "simple_hTwist": 40.584 }, { "index": 3, "nt1": "///A/2544", "nt2": "///A/2598", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.172, -0.188, 0.031, -2.491, -7.398, 0.560 ], "step_params": [ -1.142, -1.839, 2.907, -9.546, 8.748, 29.771 ], "heli_params": [ -4.630, 0.588, 2.519, 16.102, 17.571, 32.406 ], "bp2_params": [ -0.164, -0.216, 0.661, -4.083, -7.932, -3.258 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.907, "simple_Twist": 31.618, "simple_hRise": 2.552, "simple_hTwist": 34.104 }, { "index": 4, "nt1": "///A/2545", "nt2": "///A/2597", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.164, -0.216, 0.661, -4.083, -7.932, -3.258 ], "step_params": [ 0.401, -1.709, 3.382, -2.310, 1.569, 22.898 ], "heli_params": [ -4.828, -1.819, 3.203, 3.933, 5.790, 23.066 ], "bp2_params": [ 0.087, -0.248, 0.780, 1.306, -4.579, -4.112 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.382, "simple_Twist": 21.348, "simple_hRise": 3.188, "simple_hTwist": 21.528 }, { "index": 5, "nt1": "///A/2546", "nt2": "///A/2596", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 139, "helix_index": 80, "strand1": "CCU", "strand2": "GGG", "bp_type": "|||", "helix_form": "A.", "helical_rise": 3.435, "helical_rise_std": 0.241, "helical_radius": 9.225, "helical_radius_std": 0.263, "helical_axis": [ -0.027, -0.979, -0.203 ], "point1": [ 198.923, 127.009, 186.847 ], "point2": [ 198.734, 120.237, 185.443 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/2549", "nt2": "///A/2574", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.179, -0.122, 0.069, -3.387, -2.615, 1.736 ], "step_params": [ -0.608, -1.820, 2.978, -2.808, 0.765, 32.744 ], "heli_params": [ -3.336, 0.637, 2.976, 1.353, 4.969, 32.869 ], "bp2_params": [ 0.161, -0.115, 0.404, 1.669, 1.639, 1.322 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.978, "simple_Twist": 32.981, "simple_hRise": 2.976, "simple_hTwist": 33.106 }, { "index": 2, "nt1": "///A/2550", "nt2": "///A/2573", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.161, -0.115, 0.404, 1.669, 1.639, 1.322 ], "step_params": [ -0.001, -1.040, 3.613, 3.678, 1.505, 37.864 ], "heli_params": [ -1.805, 0.514, 3.555, 2.312, -5.648, 38.064 ], "bp2_params": [ 2.692, -0.648, 0.056, 1.331, 0.707, 1.182 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.613, "simple_Twist": 24.114, "simple_hRise": 3.503, "simple_hTwist": 24.435 }, { "index": 3, "nt1": "///A/2551", "nt2": "///A/2572", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 140, "helix_index": 80, "strand1": "GGGGC", "strand2": "CCCUG", "bp_type": "|||||", "helix_form": "A.A.", "helical_rise": 2.674, "helical_rise_std": 0.189, "helical_radius": 9.890, "helical_radius_std": 0.788, "helical_axis": [ 0.739, -0.670, -0.079 ], "point1": [ 203.314, 119.370, 180.354 ], "point2": [ 211.206, 112.216, 179.514 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/2552", "nt2": "///A/2569", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.168, -0.190, -0.277, -3.468, -6.181, 1.012 ], "step_params": [ -0.499, -1.685, 2.931, -8.156, 6.516, 33.734 ], "heli_params": [ -3.619, -0.227, 2.617, 10.908, 13.654, 35.267 ], "bp2_params": [ -0.093, -0.185, 0.453, -1.189, -2.183, -3.007 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.931, "simple_Twist": 33.594, "simple_hRise": 2.615, "simple_hTwist": 35.134 }, { "index": 2, "nt1": "///A/2553", "nt2": "///A/2568", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.093, -0.185, 0.453, -1.189, -2.183, -3.007 ], "step_params": [ 0.443, -3.499, 3.218, 7.075, 6.407, 18.863 ], "heli_params": [ -11.794, 1.273, 1.973, 18.122, -20.013, 21.121 ], "bp2_params": [ -0.175, -0.207, -0.600, -2.738, -3.769, -0.801 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.218, "simple_Twist": 18.896, "simple_hRise": 1.975, "simple_hTwist": 21.150 }, { "index": 3, "nt1": "///A/2554", "nt2": "///A/2567", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.175, -0.207, -0.600, -2.738, -3.769, -0.801 ], "step_params": [ -0.950, -1.669, 3.285, -3.121, 3.341, 31.506 ], "heli_params": [ -3.649, 1.167, 3.172, 6.112, 5.711, 31.828 ], "bp2_params": [ -0.933, -0.585, -0.386, -5.804, 1.123, -13.284 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.285, "simple_Twist": 35.442, "simple_hRise": 3.189, "simple_hTwist": 35.727 }, { "index": 4, "nt1": "///A/2555", "nt2": "///A/2566", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.933, -0.585, -0.386, -5.804, 1.123, -13.284 ], "step_params": [ 0.924, -1.483, 2.943, 0.044, 3.829, 35.197 ], "heli_params": [ -2.933, -1.515, 2.773, 6.309, -0.072, 35.398 ], "bp2_params": [ 0.171, -0.162, -0.352, 3.595, 4.917, 0.451 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.943, "simple_Twist": 29.347, "simple_hRise": 2.733, "simple_hTwist": 29.591 }, { "index": 5, "nt1": "///A/2556", "nt2": "///A/2565", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 141, "helix_index": 80, "strand1": "UGGGC", "strand2": "ACCCG", "bp_type": "|||||", "helix_form": ".AA.", "helical_rise": 2.947, "helical_rise_std": 0.485, "helical_radius": 9.973, "helical_radius_std": 0.794, "helical_axis": [ -0.301, 0.948, 0.103 ], "point1": [ 214.877, 135.481, 191.166 ], "point2": [ 211.343, 146.621, 192.380 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/2576", "nt2": "///A/2590", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.004, 0.287, -0.112, -1.523, 12.509, -3.031 ], "step_params": [ -0.048, -0.861, 3.724, 0.935, 9.406, 36.110 ], "heli_params": [ -2.726, 0.212, 3.400, 14.863, -1.477, 37.287 ], "bp2_params": [ -0.205, -0.093, -0.383, -2.447, -6.573, 1.070 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.724, "simple_Twist": 31.985, "simple_hRise": 3.341, "simple_hTwist": 33.318 }, { "index": 2, "nt1": "///A/2577", "nt2": "///A/2589", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.205, -0.093, -0.383, -2.447, -6.573, 1.070 ], "step_params": [ 0.632, -1.855, 3.078, 0.400, 8.291, 27.424 ], "heli_params": [ -5.368, -1.201, 2.432, 17.001, -0.819, 28.630 ], "bp2_params": [ -0.195, -0.148, -0.421, 1.222, 3.083, -1.182 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.078, "simple_Twist": 27.362, "simple_hRise": 2.431, "simple_hTwist": 28.571 }, { "index": 3, "nt1": "///A/2578", "nt2": "///A/2588", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.195, -0.148, -0.421, 1.222, 3.083, -1.182 ], "step_params": [ -0.074, -1.769, 3.092, -1.956, 6.166, 34.262 ], "heli_params": [ -3.796, -0.143, 2.742, 10.352, 3.283, 34.850 ], "bp2_params": [ -0.204, -0.174, -0.411, 1.759, 4.532, -0.307 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.092, "simple_Twist": 34.322, "simple_hRise": 2.742, "simple_hTwist": 34.909 }, { "index": 4, "nt1": "///A/2579", "nt2": "///A/2587", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.204, -0.174, -0.411, 1.759, 4.532, -0.307 ], "step_params": [ 1.178, -2.551, 3.781, -0.063, 1.789, 29.141 ], "heli_params": [ -5.502, -2.352, 3.619, 3.552, 0.125, 29.195 ], "bp2_params": [ 0.205, -0.225, 0.623, 5.335, 4.827, 3.523 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.781, "simple_Twist": 26.794, "simple_hRise": 3.603, "simple_hTwist": 26.853 }, { "index": 5, "nt1": "///A/2580", "nt2": "///A/2586", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 142, "helix_index": 58, "strand1": "GAAC", "strand2": "CUUG", "bp_type": "||||", "helix_form": "AA.", "helical_rise": 2.752, "helical_rise_std": 0.175, "helical_radius": 9.965, "helical_radius_std": 1.040, "helical_axis": [ 0.432, 0.675, -0.598 ], "point1": [ 205.755, 172.639, 187.389 ], "point2": [ 209.304, 178.180, 182.481 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/2617", "nt2": "///A/2635", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.220, -0.149, -0.046, -3.354, 13.569, 2.388 ], "step_params": [ 0.538, -1.767, 3.120, 4.011, 15.043, 31.834 ], "heli_params": [ -4.799, -0.382, 2.145, 25.601, -6.826, 35.348 ], "bp2_params": [ 0.008, -0.115, -0.553, 0.022, 4.911, 3.744 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.120, "simple_Twist": 30.437, "simple_hRise": 2.094, "simple_hTwist": 34.103 }, { "index": 2, "nt1": "///A/2618", "nt2": "///A/2634", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.008, -0.115, -0.553, 0.022, 4.911, 3.744 ], "step_params": [ -0.194, -1.574, 3.498, 0.092, 3.524, 26.600 ], "heli_params": [ -4.337, 0.442, 3.265, 7.616, -0.198, 26.829 ], "bp2_params": [ -0.055, -0.144, -0.506, 6.169, 4.530, 2.717 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.498, "simple_Twist": 26.811, "simple_hRise": 3.267, "simple_hTwist": 27.037 }, { "index": 3, "nt1": "///A/2619", "nt2": "///A/2633", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.055, -0.144, -0.506, 6.169, 4.530, 2.717 ], "step_params": [ 0.719, -1.415, 3.314, 2.993, 3.298, 36.501 ], "heli_params": [ -2.695, -0.730, 3.225, 5.242, -4.757, 36.763 ], "bp2_params": [ 0.866, 0.300, -0.506, 10.852, 0.101, 11.217 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.314, "simple_Twist": 31.720, "simple_hRise": 3.207, "simple_hTwist": 32.023 }, { "index": 4, "nt1": "///A/2620", "nt2": "///A/2632", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 143, "helix_index": 58, "strand1": "GUC", "strand2": "CAG", "bp_type": "|||", "helix_form": "AA", "helical_rise": 1.531, "helical_rise_std": 0.302, "helical_radius": 8.430, "helical_radius_std": 0.793, "helical_axis": [ 0.828, 0.397, -0.397 ], "point1": [ 211.683, 181.209, 179.578 ], "point2": [ 214.089, 182.362, 178.423 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/2621", "nt2": "///A/2630", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.200, -0.181, -0.059, -3.654, 11.709, 1.784 ], "step_params": [ 0.521, -1.605, 3.302, -2.790, 7.442, 31.533 ], "heli_params": [ -4.104, -1.394, 2.805, 13.429, 5.033, 32.495 ], "bp2_params": [ 0.042, -0.142, 0.160, 4.348, 15.020, 5.882 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.302, "simple_Twist": 29.948, "simple_hRise": 2.773, "simple_hTwist": 30.961 }, { "index": 2, "nt1": "///A/2622", "nt2": "///A/2629", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.042, -0.142, 0.160, 4.348, 15.020, 5.882 ], "step_params": [ 0.430, -1.815, 2.961, 8.468, 15.824, 33.707 ], "heli_params": [ -4.406, 0.210, 1.993, 25.194, -13.483, 38.064 ], "bp2_params": [ 0.217, -0.127, -0.266, 0.985, -2.878, 1.077 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.961, "simple_Twist": 32.881, "simple_hRise": 1.964, "simple_hTwist": 37.341 }, { "index": 3, "nt1": "///A/2623", "nt2": "///A/2628", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 144, "helix_index": 83, "strand1": "GGAAAUU", "strand2": "CCUUUAG", "bp_type": "|||||||", "helix_form": "A.AAA.", "helical_rise": 2.841, "helical_rise_std": 0.262, "helical_radius": 9.654, "helical_radius_std": 0.711, "helical_axis": [ 0.812, 0.482, -0.330 ], "point1": [ 146.625, 109.583, 215.947 ], "point2": [ 160.337, 117.719, 210.374 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///A/2659", "nt2": "///A/2817", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.209, -0.149, 0.214, -3.931, 3.928, 1.084 ], "step_params": [ 0.123, -1.987, 3.185, -2.288, 3.457, 36.266 ], "heli_params": [ -3.624, -0.495, 2.977, 5.531, 3.660, 36.494 ], "bp2_params": [ -0.128, -0.178, 0.426, -4.627, 3.262, -0.615 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.185, "simple_Twist": 36.172, "simple_hRise": 2.976, "simple_hTwist": 36.401 }, { "index": 2, "nt1": "///A/2660", "nt2": "///A/2816", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.128, -0.178, 0.426, -4.627, 3.262, -0.615 ], "step_params": [ 0.917, -2.337, 3.060, 1.427, 3.304, 27.829 ], "heli_params": [ -5.522, -1.588, 2.812, 6.834, -2.951, 28.056 ], "bp2_params": [ 0.029, -0.111, 0.423, -2.867, 6.787, 3.161 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.060, "simple_Twist": 26.624, "simple_hRise": 2.799, "simple_hTwist": 26.862 }, { "index": 3, "nt1": "///A/2661", "nt2": "///A/2815", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.029, -0.111, 0.423, -2.867, 6.787, 3.161 ], "step_params": [ -0.505, -1.848, 3.178, 0.827, 4.575, 34.145 ], "heli_params": [ -3.785, 0.972, 2.901, 7.746, -1.401, 34.451 ], "bp2_params": [ 0.009, -0.150, 0.711, 3.576, 10.602, 1.436 ], "groove_widths": [ 17.647, null, 18.334, null ], "simple_Rise": 3.178, "simple_Twist": 34.033, "simple_hRise": 2.900, "simple_hTwist": 34.340 }, { "index": 4, "nt1": "///A/2662", "nt2": "///A/2814", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.009, -0.150, 0.711, 3.576, 10.602, 1.436 ], "step_params": [ 0.080, -1.715, 3.374, 8.460, 13.766, 31.894 ], "heli_params": [ -4.669, 1.018, 2.401, 23.279, -14.305, 35.658 ], "bp2_params": [ 0.123, -0.022, -0.261, -4.315, -5.575, -5.374 ], "groove_widths": [ 17.396, null, 17.554, null ], "simple_Rise": 3.374, "simple_Twist": 31.530, "simple_hRise": 2.388, "simple_hTwist": 35.335 }, { "index": 5, "nt1": "///A/2663", "nt2": "///A/2813", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.123, -0.022, -0.261, -4.315, -5.575, -5.374 ], "step_params": [ -0.057, -1.584, 3.458, 2.175, -3.742, 31.189 ], "heli_params": [ -2.162, 0.546, 3.606, -6.917, -4.022, 31.480 ], "bp2_params": [ -0.102, -0.181, -0.832, -1.980, -2.463, -2.704 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.458, "simple_Twist": 32.283, "simple_hRise": 3.602, "simple_hTwist": 32.564 }, { "index": 6, "nt1": "///A/2664", "nt2": "///A/2812", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.102, -0.181, -0.832, -1.980, -2.463, -2.704 ], "step_params": [ 0.297, -1.912, 3.534, -1.150, -0.911, 41.644 ], "heli_params": [ -2.584, -0.549, 3.564, -1.281, 1.617, 41.669 ], "bp2_params": [ 2.861, -0.791, -0.003, 2.511, -0.771, -8.951 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.534, "simple_Twist": 25.681, "simple_hRise": 3.582, "simple_hTwist": 25.722 }, { "index": 7, "nt1": "///A/2665", "nt2": "///A/2811", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 145, "helix_index": 83, "strand1": "GAGG", "strand2": "CUCC", "bp_type": "||||", "helix_form": "AAA", "helical_rise": 2.815, "helical_rise_std": 0.157, "helical_radius": 9.581, "helical_radius_std": 0.419, "helical_axis": [ 0.799, 0.157, -0.580 ], "point1": [ 174.943, 113.987, 201.831 ], "point2": [ 181.667, 115.310, 196.955 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/2669", "nt2": "///A/2803", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.165, -0.127, 0.113, -1.126, 4.470, 1.943 ], "step_params": [ -0.003, -2.077, 3.311, 4.856, 6.206, 33.227 ], "heli_params": [ -4.481, 0.741, 2.860, 10.667, -8.346, 34.123 ], "bp2_params": [ 0.103, -0.196, -0.821, -2.050, 2.849, 0.907 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.311, "simple_Twist": 31.575, "simple_hRise": 2.831, "simple_hTwist": 32.519 }, { "index": 2, "nt1": "///A/2670", "nt2": "///A/2802", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.103, -0.196, -0.821, -2.050, 2.849, 0.907 ], "step_params": [ 0.391, -1.838, 3.539, 1.182, 2.484, 26.629 ], "heli_params": [ -4.652, -0.520, 3.370, 5.375, -2.558, 26.768 ], "bp2_params": [ -0.166, -0.206, -0.539, -1.569, -0.056, 1.833 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.539, "simple_Twist": 28.217, "simple_hRise": 3.381, "simple_hTwist": 28.348 }, { "index": 3, "nt1": "///A/2671", "nt2": "///A/2801", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.166, -0.206, -0.539, -1.569, -0.056, 1.833 ], "step_params": [ 0.149, -1.957, 3.172, -5.526, 8.783, 34.703 ], "heli_params": [ -4.260, -0.937, 2.565, 14.333, 9.017, 36.175 ], "bp2_params": [ -0.186, -0.170, 0.114, -8.209, 10.994, 2.296 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.172, "simple_Twist": 34.865, "simple_hRise": 2.568, "simple_hTwist": 36.330 }, { "index": 4, "nt1": "///A/2672", "nt2": "///A/2800", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 146, "helix_index": 82, "strand1": "CUGUCC", "strand2": "GGUAGG", "bp_type": "||||||", "helix_form": "..AA.", "helical_rise": 3.294, "helical_rise_std": 0.286, "helical_radius": 9.645, "helical_radius_std": 0.655, "helical_axis": [ 0.614, -0.664, -0.426 ], "point1": [ 202.022, 117.726, 206.365 ], "point2": [ 212.282, 106.624, 199.240 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/2675", "nt2": "///A/2703", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.151, -0.145, 0.169, 7.632, 5.972, 1.698 ], "step_params": [ 0.436, -2.546, 3.232, 8.864, 5.891, 25.831 ], "heli_params": [ -6.584, 1.056, 2.604, 12.523, -18.841, 27.903 ], "bp2_params": [ 0.768, -0.889, -0.575, 1.170, -0.782, -14.575 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.232, "simple_Twist": 22.875, "simple_hRise": 2.502, "simple_hTwist": 25.200 }, { "index": 2, "nt1": "///A/2676", "nt2": "///A/2702", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.768, -0.889, -0.575, 1.170, -0.782, -14.575 ], "step_params": [ 0.154, -2.773, 3.563, 0.245, 5.854, 24.574 ], "heli_params": [ -8.037, -0.282, 2.838, 13.509, -0.565, 25.252 ], "bp2_params": [ -1.422, -0.404, -0.199, -7.802, -2.792, -7.324 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.563, "simple_Twist": 36.310, "simple_hRise": 3.095, "simple_hTwist": 36.764 }, { "index": 3, "nt1": "///A/2677", "nt2": "///A/2701", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.422, -0.404, -0.199, -7.802, -2.792, -7.324 ], "step_params": [ -0.132, -1.208, 3.294, -2.541, 0.464, 37.356 ], "heli_params": [ -1.944, -0.130, 3.281, 0.724, 3.961, 37.442 ], "bp2_params": [ -0.116, -0.097, -0.508, 0.243, 0.432, -5.559 ], "groove_widths": [ 16.668, null, 20.261, null ], "simple_Rise": 3.294, "simple_Twist": 30.110, "simple_hRise": 3.275, "simple_hTwist": 30.218 }, { "index": 4, "nt1": "///A/2678", "nt2": "///A/2700", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.116, -0.097, -0.508, 0.243, 0.432, -5.559 ], "step_params": [ 0.434, -1.364, 3.011, -0.652, 3.346, 31.909 ], "heli_params": [ -3.007, -0.890, 2.848, 6.065, 1.182, 32.086 ], "bp2_params": [ 0.165, -0.190, -0.292, 3.838, -1.390, 3.633 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.011, "simple_Twist": 30.089, "simple_hRise": 2.836, "simple_hTwist": 30.277 }, { "index": 5, "nt1": "///A/2679", "nt2": "///A/2699", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.165, -0.190, -0.292, 3.838, -1.390, 3.633 ], "step_params": [ -1.069, -2.077, 2.920, -4.346, 17.798, 36.067 ], "heli_params": [ -4.569, 1.171, 1.848, 26.730, 6.528, 40.315 ], "bp2_params": [ 0.184, -0.182, -0.228, 5.613, -0.143, -1.684 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.920, "simple_Twist": 36.515, "simple_hRise": 1.863, "simple_hTwist": 40.713 }, { "index": 6, "nt1": "///A/2680", "nt2": "///A/2698", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 147, "helix_index": 82, "strand1": "CGCAC", "strand2": "GCGUG", "bp_type": "|||||", "helix_form": "AAAA", "helical_rise": 2.915, "helical_rise_std": 0.163, "helical_radius": 9.130, "helical_radius_std": 0.251, "helical_axis": [ -0.474, 0.690, 0.547 ], "point1": [ 200.683, 121.563, 210.895 ], "point2": [ 195.205, 129.534, 217.221 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/2705", "nt2": "///A/2760", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.247, -0.186, -0.462, -6.606, -9.601, 2.423 ], "step_params": [ -0.326, -1.382, 4.118, -1.307, 1.690, 30.360 ], "heli_params": [ -3.055, 0.294, 4.047, 3.222, 2.491, 30.434 ], "bp2_params": [ -0.155, -0.292, -1.111, -11.436, 0.948, -0.548 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 4.118, "simple_Twist": 32.656, "simple_hRise": 4.053, "simple_hTwist": 32.724 }, { "index": 2, "nt1": "///A/2706", "nt2": "///A/2759", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.155, -0.292, -1.111, -11.436, 0.948, -0.548 ], "step_params": [ -0.264, -1.216, 3.083, -2.314, 5.893, 31.406 ], "heli_params": [ -3.175, 0.097, 2.826, 10.750, 4.221, 32.022 ], "bp2_params": [ 0.116, -0.194, -0.680, -0.999, 4.167, -1.987 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.083, "simple_Twist": 29.922, "simple_hRise": 2.810, "simple_hTwist": 30.570 }, { "index": 3, "nt1": "///A/2707", "nt2": "///A/2758", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.116, -0.194, -0.680, -0.999, 4.167, -1.987 ], "step_params": [ 0.459, -1.545, 3.042, -4.921, 7.292, 31.013 ], "heli_params": [ -3.914, -1.589, 2.523, 13.306, 8.979, 32.207 ], "bp2_params": [ 0.022, -0.089, 0.324, 0.353, 6.757, -2.663 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.042, "simple_Twist": 31.227, "simple_hRise": 2.527, "simple_hTwist": 32.413 }, { "index": 4, "nt1": "///A/2708", "nt2": "///A/2757", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.022, -0.089, 0.324, 0.353, 6.757, -2.663 ], "step_params": [ 0.552, -1.886, 3.287, 2.329, 4.219, 36.064 ], "heli_params": [ -3.596, -0.568, 3.083, 6.777, -3.741, 36.374 ], "bp2_params": [ 0.222, -0.141, 0.515, 5.143, 7.041, 1.262 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.287, "simple_Twist": 35.346, "simple_hRise": 3.078, "simple_hTwist": 35.663 }, { "index": 5, "nt1": "///A/2709", "nt2": "///A/2756", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 148, "helix_index": 82, "strand1": "UGGU", "strand2": "AUCG", "bp_type": "||||", "helix_form": "...", "helical_rise": 2.732, "helical_rise_std": 0.369, "helical_radius": 9.664, "helical_radius_std": 0.900, "helical_axis": [ 0.120, 0.679, 0.724 ], "point1": [ 196.058, 128.110, 226.834 ], "point2": [ 197.047, 133.690, 232.782 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/2713", "nt2": "///A/2754", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.020, -0.067, -0.418, -8.668, -7.648, 0.286 ], "step_params": [ 1.036, -1.629, 3.557, -4.547, 31.628, 16.365 ], "heli_params": [ -6.205, -2.196, 0.087, 62.920, 9.046, 35.803 ], "bp2_params": [ -2.347, -0.634, -1.022, -12.956, -11.850, -9.623 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.557, "simple_Twist": 28.496, "simple_hRise": 1.118, "simple_hTwist": 42.565 }, { "index": 2, "nt1": "///A/2714", "nt2": "///A/2753", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -2.347, -0.634, -1.022, -12.956, -11.850, -9.623 ], "step_params": [ -1.015, -1.575, 3.700, -4.558, 0.517, 39.398 ], "heli_params": [ -2.391, 0.886, 3.769, 0.764, 6.733, 39.654 ], "bp2_params": [ -0.134, -0.247, -1.314, -16.584, 0.333, -1.565 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.700, "simple_Twist": 27.781, "simple_hRise": 3.785, "simple_hTwist": 28.150 }, { "index": 3, "nt1": "///A/2715", "nt2": "///A/2752", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.134, -0.247, -1.314, -16.584, 0.333, -1.565 ], "step_params": [ -0.234, -0.846, 3.069, -6.895, 4.454, 38.964 ], "heli_params": [ -1.724, -0.401, 2.956, 6.588, 10.199, 39.786 ], "bp2_params": [ 2.062, -0.419, -0.161, -0.277, 5.182, -10.080 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.069, "simple_Twist": 27.735, "simple_hRise": 2.875, "simple_hTwist": 28.901 }, { "index": 4, "nt1": "///A/2716", "nt2": "///A/2751", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 149, "helix_index": 82, "strand1": "CCAGU", "strand2": "GGUCG", "bp_type": "|||||", "helix_form": "AAA.", "helical_rise": 2.676, "helical_rise_std": 0.121, "helical_radius": 9.179, "helical_radius_std": 0.485, "helical_axis": [ -0.044, 0.605, 0.795 ], "point1": [ 198.684, 146.976, 237.150 ], "point2": [ 198.220, 153.392, 245.577 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/2720", "nt2": "///A/2747", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.191, -0.205, -0.528, -6.303, 5.203, -1.983 ], "step_params": [ -0.757, -2.078, 3.335, -2.257, 6.821, 26.879 ], "heli_params": [ -5.883, 1.060, 2.786, 14.350, 4.748, 27.805 ], "bp2_params": [ 0.181, -0.195, -0.486, -1.091, 8.922, -2.801 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.335, "simple_Twist": 26.835, "simple_hRise": 2.784, "simple_hTwist": 27.763 }, { "index": 2, "nt1": "///A/2721", "nt2": "///A/2746", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.181, -0.195, -0.486, -1.091, 8.922, -2.801 ], "step_params": [ 0.756, -1.890, 3.307, -1.669, 11.508, 32.099 ], "heli_params": [ -4.889, -1.531, 2.462, 20.009, 2.902, 34.089 ], "bp2_params": [ 0.022, -0.089, 0.004, -2.103, -1.571, 2.181 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.307, "simple_Twist": 32.791, "simple_hRise": 2.482, "simple_hTwist": 34.738 }, { "index": 3, "nt1": "///A/2722", "nt2": "///A/2745", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.022, -0.089, 0.004, -2.103, -1.571, 2.181 ], "step_params": [ -0.423, -1.759, 3.314, -1.670, 2.217, 31.835 ], "heli_params": [ -3.596, 0.467, 3.204, 4.032, 3.037, 31.952 ], "bp2_params": [ -0.214, -0.208, 0.536, -1.335, -1.842, -0.523 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.314, "simple_Twist": 33.145, "simple_hRise": 3.209, "simple_hTwist": 33.258 }, { "index": 4, "nt1": "///A/2723", "nt2": "///A/2744", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.214, -0.208, 0.536, -1.335, -1.842, -0.523 ], "step_params": [ 0.309, -1.615, 3.199, 1.957, 0.213, 41.016 ], "heli_params": [ -2.325, -0.233, 3.202, 0.304, -2.791, 41.062 ], "bp2_params": [ 1.875, -0.479, 0.563, 0.784, -0.124, -4.238 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.199, "simple_Twist": 29.792, "simple_hRise": 3.201, "simple_hTwist": 29.856 }, { "index": 5, "nt1": "///A/2724", "nt2": "///A/2743", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 150, "helix_index": 82, "strand1": "UGUUCU", "strand2": "ACGGGA", "bp_type": "||||||", "helix_form": "A....", "helical_rise": 2.878, "helical_rise_std": 0.405, "helical_radius": 9.542, "helical_radius_std": 0.688, "helical_axis": [ -0.080, 0.398, 0.914 ], "point1": [ 199.335, 157.431, 244.612 ], "point2": [ 198.172, 163.196, 257.840 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///A/2725", "nt2": "///A/2740", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.126, -0.127, -0.786, -7.939, -9.996, -1.080 ], "step_params": [ -0.006, -1.230, 3.121, -13.668, 5.746, 27.694 ], "heli_params": [ -3.277, -2.367, 2.547, 11.057, 26.301, 31.344 ], "bp2_params": [ -0.152, -0.171, 0.779, 1.154, 5.380, 3.014 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.121, "simple_Twist": 28.340, "simple_hRise": 2.565, "simple_hTwist": 31.914 }, { "index": 2, "nt1": "///A/2726", "nt2": "///A/2739", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.152, -0.171, 0.779, 1.154, 5.380, 3.014 ], "step_params": [ 0.419, -1.386, 3.249, 2.791, 4.390, 38.372 ], "heli_params": [ -2.616, -0.298, 3.099, 6.642, -4.222, 38.710 ], "bp2_params": [ 1.806, -0.404, 0.563, 5.814, 6.850, 2.272 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.249, "simple_Twist": 27.290, "simple_hRise": 3.020, "simple_hTwist": 27.772 }, { "index": 3, "nt1": "///A/2727", "nt2": "///A/2738", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.806, -0.404, 0.563, 5.814, 6.850, 2.272 ], "step_params": [ -0.003, -1.881, 3.067, 8.076, 10.724, 34.910 ], "heli_params": [ -4.155, 0.921, 2.350, 17.114, -12.888, 37.327 ], "bp2_params": [ 1.827, -0.467, 0.271, -0.141, -5.890, -1.284 ], "groove_widths": [ 17.143, null, 17.754, null ], "simple_Rise": 3.067, "simple_Twist": 34.967, "simple_hRise": 2.352, "simple_hTwist": 37.381 }, { "index": 4, "nt1": "///A/2728", "nt2": "///A/2737", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.827, -0.467, 0.271, -0.141, -5.890, -1.284 ], "step_params": [ -0.149, -1.894, 3.143, -0.507, 3.104, 28.115 ], "heli_params": [ -4.545, 0.195, 2.924, 6.365, 1.040, 28.287 ], "bp2_params": [ 0.187, -0.201, 0.457, -4.072, 1.406, -0.466 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.143, "simple_Twist": 37.001, "simple_hRise": 2.982, "simple_hTwist": 37.129 }, { "index": 5, "nt1": "///A/2729", "nt2": "///A/2736", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.187, -0.201, 0.457, -4.072, 1.406, -0.466 ], "step_params": [ -1.147, -2.668, 2.803, -7.284, 4.750, 25.545 ], "heli_params": [ -6.734, 0.909, 2.501, 10.367, 15.898, 26.961 ], "bp2_params": [ -0.109, -0.260, 0.999, 6.756, 1.628, -7.047 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.803, "simple_Twist": 27.019, "simple_hRise": 2.524, "simple_hTwist": 28.360 }, { "index": 6, "nt1": "///A/2730", "nt2": "///A/2735", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 151, "helix_index": 83, "strand1": "GGG", "strand2": "CCC", "bp_type": "|||", "helix_form": "A.", "helical_rise": 2.133, "helical_rise_std": 0.053, "helical_radius": 9.509, "helical_radius_std": 1.320, "helical_axis": [ 0.338, -0.597, -0.727 ], "point1": [ 189.875, 110.988, 193.473 ], "point2": [ 191.294, 108.477, 190.415 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/2764", "nt2": "///A/2798", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.141, -0.273, -1.013, -12.685, 1.533, -1.728 ], "step_params": [ 0.336, -1.643, 2.932, -2.814, 7.631, 29.811 ], "heli_params": [ -4.318, -1.086, 2.406, 14.497, 5.347, 30.876 ], "bp2_params": [ -0.211, -0.209, -0.411, -4.992, 2.844, 1.075 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.932, "simple_Twist": 30.262, "simple_hRise": 2.415, "simple_hTwist": 31.312 }, { "index": 2, "nt1": "///A/2765", "nt2": "///A/2797", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.211, -0.209, -0.411, -4.992, 2.844, 1.075 ], "step_params": [ 0.041, -1.898, 2.969, 5.495, 10.445, 37.861 ], "heli_params": [ -3.825, 0.477, 2.367, 15.640, -8.228, 39.594 ], "bp2_params": [ -0.164, -0.203, -0.694, 1.947, 7.558, -0.484 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.969, "simple_Twist": 37.759, "simple_hRise": 2.366, "simple_hTwist": 39.496 }, { "index": 3, "nt1": "///A/2766", "nt2": "///A/2796", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 152, "helix_index": 83, "strand1": "GUGC", "strand2": "UACG", "bp_type": "||||", "helix_form": "..A", "helical_rise": 2.022, "helical_rise_std": 0.177, "helical_radius": 10.274, "helical_radius_std": 0.699, "helical_axis": [ 0.425, -0.377, -0.823 ], "point1": [ 188.464, 102.980, 173.047 ], "point2": [ 190.952, 100.773, 168.236 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/2771", "nt2": "///A/2791", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.994, -0.441, 0.035, 2.618, -2.584, 8.156 ], "step_params": [ -0.471, -1.821, 3.077, -0.902, 0.444, 37.145 ], "heli_params": [ -2.913, 0.626, 3.066, 0.697, 1.415, 37.158 ], "bp2_params": [ 0.110, -0.166, -0.113, 3.402, -4.134, 9.344 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.077, "simple_Twist": 30.941, "simple_hRise": 3.064, "simple_hTwist": 30.957 }, { "index": 2, "nt1": "///A/2772", "nt2": "///A/2790", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.110, -0.166, -0.113, 3.402, -4.134, 9.344 ], "step_params": [ 0.679, -3.032, 3.845, 1.915, 13.890, 19.415 ], "heli_params": [ -11.364, -1.081, 1.439, 35.765, -4.931, 23.909 ], "bp2_params": [ -0.211, -0.351, -1.197, -10.393, -4.825, 1.588 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.845, "simple_Twist": 20.996, "simple_hRise": 1.610, "simple_hTwist": 25.204 }, { "index": 3, "nt1": "///A/2773", "nt2": "///A/2789", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.211, -0.351, -1.197, -10.393, -4.825, 1.588 ], "step_params": [ -0.504, -1.785, 3.208, -7.541, 3.156, 38.173 ], "heli_params": [ -3.044, -0.133, 3.097, 4.758, 11.371, 39.006 ], "bp2_params": [ 0.131, -0.196, -0.395, -10.944, 5.256, -1.015 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.208, "simple_Twist": 36.109, "simple_hRise": 3.086, "simple_hTwist": 36.993 }, { "index": 4, "nt1": "///A/2774", "nt2": "///A/2788", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 153, "helix_index": 84, "strand1": "UUCC", "strand2": "AAGG", "bp_type": "||||", "helix_form": "AAA", "helical_rise": 2.760, "helical_rise_std": 0.216, "helical_radius": 9.690, "helical_radius_std": 0.824, "helical_axis": [ -0.927, -0.231, -0.294 ], "point1": [ 134.505, 123.014, 217.286 ], "point2": [ 126.939, 121.129, 214.883 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/2820", "nt2": "///A/2831", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.268, -0.194, 0.799, -0.723, -2.339, -8.055 ], "step_params": [ 0.070, -1.937, 2.971, -5.335, 4.118, 42.833 ], "heli_params": [ -2.976, -0.552, 2.755, 5.597, 7.252, 43.335 ], "bp2_params": [ -0.161, -0.447, 1.078, 1.827, -5.640, -5.771 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.971, "simple_Twist": 42.934, "simple_hRise": 2.755, "simple_hTwist": 43.435 }, { "index": 2, "nt1": "///A/2821", "nt2": "///A/2830", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.161, -0.447, 1.078, 1.827, -5.640, -5.771 ], "step_params": [ 0.393, -2.292, 3.000, 3.646, -2.548, 31.284 ], "heli_params": [ -3.760, -0.079, 3.197, -4.695, -6.718, 31.591 ], "bp2_params": [ 0.128, -0.231, 0.476, 3.122, -8.322, -3.869 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.000, "simple_Twist": 29.373, "simple_hRise": 3.208, "simple_hTwist": 29.701 }, { "index": 3, "nt1": "///A/2822", "nt2": "///A/2829", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.128, -0.231, 0.476, 3.122, -8.322, -3.869 ], "step_params": [ 0.504, -2.290, 3.240, 1.545, -5.647, 26.548 ], "heli_params": [ -3.358, -0.657, 3.662, -12.110, -3.312, 27.175 ], "bp2_params": [ 0.151, -0.205, -0.016, 4.078, 3.660, -1.900 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.240, "simple_Twist": 26.232, "simple_hRise": 3.666, "simple_hTwist": 26.866 }, { "index": 4, "nt1": "///A/2823", "nt2": "///A/2828", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 154, "helix_index": 84, "strand1": "GAUC", "strand2": "CUAG", "bp_type": "||||", "helix_form": "AA.", "helical_rise": 3.178, "helical_rise_std": 0.134, "helical_radius": 9.831, "helical_radius_std": 0.469, "helical_axis": [ 0.797, 0.415, 0.438 ], "point1": [ 145.663, 126.035, 229.470 ], "point2": [ 153.178, 129.948, 233.600 ], "num_pairs": 4, "pairs": [ { "index": 1, "nt1": "///A/2836", "nt2": "///A/2914", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.175, -0.123, 0.282, -3.693, -4.733, 1.612 ], "step_params": [ 0.198, -1.829, 3.367, 1.678, -0.693, 30.056 ], "heli_params": [ -3.375, -0.025, 3.413, -1.336, -3.231, 30.109 ], "bp2_params": [ 0.025, -0.090, -0.021, -4.109, -2.787, 1.235 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.367, "simple_Twist": 28.887, "simple_hRise": 3.415, "simple_hTwist": 28.943 }, { "index": 2, "nt1": "///A/2837", "nt2": "///A/2913", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.025, -0.090, -0.021, -4.109, -2.787, 1.235 ], "step_params": [ 0.490, -1.755, 3.591, -2.246, -0.969, 32.067 ], "heli_params": [ -2.978, -1.327, 3.599, -1.751, 4.058, 32.158 ], "bp2_params": [ 0.004, -0.095, 0.237, -8.145, -3.635, 2.782 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.591, "simple_Twist": 32.012, "simple_hRise": 3.599, "simple_hTwist": 32.103 }, { "index": 3, "nt1": "///A/2838", "nt2": "///A/2912", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.004, -0.095, 0.237, -8.145, -3.635, 2.782 ], "step_params": [ -0.374, -1.849, 3.416, -7.100, -2.027, 34.583 ], "heli_params": [ -2.724, -0.509, 3.521, -3.363, 11.777, 35.339 ], "bp2_params": [ 0.403, -0.642, 1.532, -16.547, 5.304, 0.524 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.416, "simple_Twist": 32.454, "simple_hRise": 3.523, "simple_hTwist": 33.262 }, { "index": 4, "nt1": "///A/2839", "nt2": "///A/2911", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 155, "helix_index": 84, "strand1": "CCUGA", "strand2": "GGACU", "bp_type": "|||||", "helix_form": "A..A", "helical_rise": 1.692, "helical_rise_std": 0.311, "helical_radius": 9.305, "helical_radius_std": 0.813, "helical_axis": [ 0.584, 0.808, -0.073 ], "point1": [ 161.471, 130.745, 228.412 ], "point2": [ 165.220, 135.934, 227.945 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/2840", "nt2": "///A/2856", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.170, -0.196, 0.558, 2.700, -8.489, -2.702 ], "step_params": [ -0.101, -2.122, 3.238, -6.347, -9.277, 30.377 ], "heli_params": [ -2.022, -1.041, 3.659, -16.990, 11.624, 32.344 ], "bp2_params": [ 0.231, -0.197, 0.537, 7.809, -0.250, 1.601 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.238, "simple_Twist": 30.046, "simple_hRise": 3.661, "simple_hTwist": 32.035 }, { "index": 2, "nt1": "///A/2841", "nt2": "///A/2855", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.231, -0.197, 0.537, 7.809, -0.250, 1.601 ], "step_params": [ -1.583, -2.612, 3.244, 0.596, 30.492, 31.436 ], "heli_params": [ -5.548, 2.174, 0.566, 45.171, -0.883, 43.529 ], "bp2_params": [ -0.164, -0.051, -0.299, -11.064, -13.662, -2.591 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.244, "simple_Twist": 32.973, "simple_hRise": 0.670, "simple_hTwist": 44.625 }, { "index": 3, "nt1": "///A/2842", "nt2": "///A/2854", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.164, -0.051, -0.299, -11.064, -13.662, -2.591 ], "step_params": [ 0.757, -2.247, 3.215, -6.252, -2.840, 24.374 ], "heli_params": [ -4.309, -3.532, 3.162, -6.563, 14.446, 25.309 ], "bp2_params": [ -0.180, -0.242, 0.702, -0.624, 0.465, 0.089 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.215, "simple_Twist": 25.083, "simple_hRise": 3.167, "simple_hTwist": 25.992 }, { "index": 4, "nt1": "///A/2843", "nt2": "///A/2853", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.180, -0.242, 0.702, -0.624, 0.465, 0.089 ], "step_params": [ -0.446, -1.714, 3.244, 1.722, 1.242, 34.697 ], "heli_params": [ -3.055, 1.003, 3.158, 2.080, -2.884, 34.760 ], "bp2_params": [ 0.058, -0.159, 0.744, 1.542, -1.180, -3.388 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.244, "simple_Twist": 33.342, "simple_hRise": 3.154, "simple_hTwist": 33.407 }, { "index": 5, "nt1": "///A/2844", "nt2": "///A/2852", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 156, "helix_index": 85, "strand1": "UAG", "strand2": "AUC", "bp_type": "|||", "helix_form": "AA", "helical_rise": 3.129, "helical_rise_std": 0.221, "helical_radius": 9.072, "helical_radius_std": 0.640, "helical_axis": [ 0.957, 0.068, 0.281 ], "point1": [ 165.741, 129.371, 245.602 ], "point2": [ 171.780, 129.801, 247.377 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/2861", "nt2": "///A/2907", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.199, -0.085, -0.603, -7.990, 5.004, -4.372 ], "step_params": [ 0.351, -1.535, 3.247, -3.684, 5.783, 28.888 ], "heli_params": [ -4.144, -1.416, 2.828, 11.391, 7.256, 29.674 ], "bp2_params": [ 0.151, -0.054, -0.011, -1.882, 6.959, -1.924 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.247, "simple_Twist": 27.417, "simple_hRise": 2.801, "simple_hTwist": 28.245 }, { "index": 2, "nt1": "///A/2862", "nt2": "///A/2906", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.151, -0.054, -0.011, -1.882, 6.959, -1.924 ], "step_params": [ 0.898, -1.990, 3.072, 0.024, 3.232, 33.792 ], "heli_params": [ -3.880, -1.535, 2.876, 5.545, -0.040, 33.942 ], "bp2_params": [ -0.125, -0.153, 0.036, -0.682, 7.287, -0.420 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.072, "simple_Twist": 35.439, "simple_hRise": 2.886, "simple_hTwist": 35.581 }, { "index": 3, "nt1": "///A/2863", "nt2": "///A/2905", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 157, "helix_index": 85, "strand1": "GUCUG", "strand2": "UAGAC", "bp_type": "|||||", "helix_form": ".AA.", "helical_rise": 2.523, "helical_rise_std": 0.188, "helical_radius": 8.952, "helical_radius_std": 0.834, "helical_axis": [ 0.923, 0.281, 0.262 ], "point1": [ 175.854, 129.655, 245.702 ], "point2": [ 185.005, 132.441, 248.295 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/2864", "nt2": "///A/2903", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -3.491, -1.113, 0.494, 2.160, -0.154, -3.809 ], "step_params": [ -0.064, -1.270, 3.150, -4.306, 2.727, 52.908 ], "heli_params": [ -1.586, -0.191, 3.082, 3.053, 4.821, 53.136 ], "bp2_params": [ -0.159, -0.171, 0.735, 1.396, -2.244, -3.461 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.150, "simple_Twist": 33.974, "simple_hRise": 3.027, "simple_hTwist": 34.343 }, { "index": 2, "nt1": "///A/2865", "nt2": "///A/2902", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.159, -0.171, 0.735, 1.396, -2.244, -3.461 ], "step_params": [ 0.005, -1.479, 3.008, 2.183, 3.353, 35.482 ], "heli_params": [ -2.849, 0.275, 2.856, 5.480, -3.568, 35.699 ], "bp2_params": [ 0.185, -0.159, 0.477, 2.676, 1.623, -0.118 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.008, "simple_Twist": 33.456, "simple_hRise": 2.845, "simple_hTwist": 33.688 }, { "index": 3, "nt1": "///A/2866", "nt2": "///A/2901", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.185, -0.159, 0.477, 2.676, 1.623, -0.118 ], "step_params": [ 0.302, -1.930, 3.082, 0.474, 2.766, 33.441 ], "heli_params": [ -3.760, -0.451, 2.921, 4.796, -0.822, 33.555 ], "bp2_params": [ 0.071, -0.156, 0.434, 3.869, 1.369, 0.824 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.082, "simple_Twist": 34.511, "simple_hRise": 2.927, "simple_hTwist": 34.621 }, { "index": 4, "nt1": "///A/2867", "nt2": "///A/2900", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.071, -0.156, 0.434, 3.869, 1.369, 0.824 ], "step_params": [ 0.712, -2.349, 3.499, 13.454, 9.777, 28.234 ], "heli_params": [ -5.885, 1.089, 2.632, 18.184, -25.023, 32.682 ], "bp2_params": [ -0.224, -0.225, -0.808, -2.920, -2.517, 1.004 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.499, "simple_Twist": 29.503, "simple_hRise": 2.679, "simple_hTwist": 33.777 }, { "index": 5, "nt1": "///A/2868", "nt2": "///A/2899", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 158, "helix_index": 85, "strand1": "GGU", "strand2": "UCG", "bp_type": "|||", "helix_form": "..", "helical_rise": 3.347, "helical_rise_std": 0.227, "helical_radius": 9.250, "helical_radius_std": 1.066, "helical_axis": [ 0.973, 0.116, 0.199 ], "point1": [ 192.052, 132.534, 251.144 ], "point2": [ 198.511, 133.304, 252.462 ], "num_pairs": 3, "pairs": [ { "index": 1, "nt1": "///A/2870", "nt2": "///A/2896", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.703, -0.501, -1.172, -11.927, -5.779, -5.480 ], "step_params": [ -0.562, -1.398, 3.770, -2.654, 0.372, 35.955 ], "heli_params": [ -2.320, 0.473, 3.786, 0.601, 4.292, 36.052 ], "bp2_params": [ -0.128, -0.242, -1.010, -9.266, 0.413, -1.686 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.770, "simple_Twist": 27.648, "simple_hRise": 3.787, "simple_hTwist": 27.775 }, { "index": 2, "nt1": "///A/2871", "nt2": "///A/2895", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.128, -0.242, -1.010, -9.266, 0.413, -1.686 ], "step_params": [ 0.220, -0.946, 3.264, -3.914, 2.760, 38.339 ], "heli_params": [ -1.765, -0.807, 3.154, 4.182, 5.931, 38.626 ], "bp2_params": [ 2.173, -0.296, 0.232, 2.941, 4.428, -6.169 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.264, "simple_Twist": 25.987, "simple_hRise": 3.083, "simple_hTwist": 26.417 }, { "index": 3, "nt1": "///A/2872", "nt2": "///A/2894", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 159, "helix_index": 85, "strand1": "GUGUG", "strand2": "UACAC", "bp_type": "|||||", "helix_form": ".AAA", "helical_rise": 2.698, "helical_rise_std": 0.315, "helical_radius": 9.144, "helical_radius_std": 0.537, "helical_axis": [ 0.479, 0.658, 0.581 ], "point1": [ 204.127, 143.863, 262.105 ], "point2": [ 209.264, 150.924, 268.331 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///A/2877", "nt2": "///A/2890", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -1.499, -0.653, -1.695, -22.221, -6.645, -4.127 ], "step_params": [ -0.072, -0.456, 2.796, -5.379, 5.246, 33.226 ], "heli_params": [ -1.487, -0.603, 2.674, 9.030, 9.260, 34.041 ], "bp2_params": [ -0.253, -0.359, -1.391, -0.601, -0.215, -2.918 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.796, "simple_Twist": 26.584, "simple_hRise": 2.623, "simple_hTwist": 27.607 }, { "index": 2, "nt1": "///A/2878", "nt2": "///A/2889", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.253, -0.359, -1.391, -0.601, -0.215, -2.918 ], "step_params": [ 0.376, -1.079, 3.790, -9.663, 18.977, 30.119 ], "heli_params": [ -4.463, -1.998, 2.483, 31.982, 16.285, 36.744 ], "bp2_params": [ -0.192, -0.221, -0.662, -6.533, -4.746, 0.441 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.790, "simple_Twist": 29.955, "simple_hRise": 2.475, "simple_hTwist": 36.612 }, { "index": 3, "nt1": "///A/2879", "nt2": "///A/2888", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.192, -0.221, -0.662, -6.533, -4.746, 0.441 ], "step_params": [ -0.042, -1.373, 3.092, -2.540, 1.526, 33.136 ], "heli_params": [ -2.637, -0.324, 3.023, 2.669, 4.443, 33.265 ], "bp2_params": [ 0.026, -0.186, -0.551, -0.219, -3.363, 3.114 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.092, "simple_Twist": 31.907, "simple_hRise": 3.019, "simple_hTwist": 32.041 }, { "index": 4, "nt1": "///A/2880", "nt2": "///A/2887", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.026, -0.186, -0.551, -0.219, -3.363, 3.114 ], "step_params": [ -0.137, -1.639, 3.684, -0.369, 17.142, 33.657 ], "heli_params": [ -4.801, 0.164, 2.582, 27.501, 0.592, 37.660 ], "bp2_params": [ -0.091, -0.234, -0.781, -6.624, 8.539, -1.418 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.684, "simple_Twist": 34.725, "simple_hRise": 2.622, "simple_hTwist": 38.610 }, { "index": 5, "nt1": "///A/2881", "nt2": "///A/2886", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 160, "helix_index": 86, "strand1": "UGGUGGC", "strand2": "ACCGCCG", "bp_type": "|||||||", "helix_form": "....AA", "helical_rise": 2.656, "helical_rise_std": 0.248, "helical_radius": 10.286, "helical_radius_std": 1.069, "helical_axis": [ 0.572, 0.008, 0.820 ], "point1": [ 169.413, 158.690, 70.833 ], "point2": [ 178.361, 158.813, 83.658 ], "num_pairs": 7, "pairs": [ { "index": 1, "nt1": "///B/3", "nt2": "///B/113", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.028, -0.106, -0.442, 5.801, 0.214, -7.818 ], "step_params": [ -1.702, -1.569, 3.225, -12.458, -0.878, 26.889 ], "heli_params": [ -2.865, 0.408, 3.684, -1.772, 25.141, 29.599 ], "bp2_params": [ -0.179, -0.265, 0.284, -0.429, -12.630, -1.237 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.225, "simple_Twist": 27.442, "simple_hRise": 3.682, "simple_hTwist": 30.101 }, { "index": 2, "nt1": "///B/4", "nt2": "///B/112", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.179, -0.265, 0.284, -0.429, -12.630, -1.237 ], "step_params": [ -1.272, -2.119, 3.846, -1.558, -0.512, 28.747 ], "heli_params": [ -4.124, 2.143, 3.944, -1.030, 3.135, 28.793 ], "bp2_params": [ -0.184, -0.385, -1.281, -7.316, -5.320, 1.686 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.846, "simple_Twist": 28.688, "simple_hRise": 3.944, "simple_hTwist": 28.734 }, { "index": 3, "nt1": "///B/5", "nt2": "///B/111", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.184, -0.385, -1.281, -7.316, -5.320, 1.686 ], "step_params": [ 0.321, -1.006, 3.178, -4.052, 1.973, 42.075 ], "heli_params": [ -1.587, -0.842, 3.087, 2.738, 5.625, 42.305 ], "bp2_params": [ 1.743, -0.880, -1.209, 2.187, -3.254, -2.527 ], "groove_widths": [ 16.524, null, 19.802, null ], "simple_Rise": 3.178, "simple_Twist": 31.455, "simple_hRise": 3.046, "simple_hTwist": 31.768 }, { "index": 4, "nt1": "///B/6", "nt2": "///B/110", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 1.743, -0.880, -1.209, 2.187, -3.254, -2.527 ], "step_params": [ 0.147, -3.131, 3.910, 1.291, 8.886, 10.840 ], "heli_params": [ -19.997, 0.448, 1.058, 39.323, -5.715, 14.068 ], "bp2_params": [ -0.258, -0.250, -0.629, -2.713, -3.351, 2.294 ], "groove_widths": [ 16.624, null, 18.423, null ], "simple_Rise": 3.910, "simple_Twist": 21.836, "simple_hRise": 2.466, "simple_hTwist": 23.590 }, { "index": 5, "nt1": "///B/7", "nt2": "///B/109", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.258, -0.250, -0.629, -2.713, -3.351, 2.294 ], "step_params": [ -0.295, -1.474, 3.151, -0.974, 7.516, 32.861 ], "heli_params": [ -3.662, 0.364, 2.764, 13.070, 1.693, 33.700 ], "bp2_params": [ -0.105, -0.287, -0.777, -2.260, 2.336, -2.119 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.151, "simple_Twist": 32.389, "simple_hRise": 2.757, "simple_hTwist": 33.241 }, { "index": 6, "nt1": "///B/8", "nt2": "///B/108", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.105, -0.287, -0.777, -2.260, 2.336, -2.119 ], "step_params": [ 0.420, -1.277, 2.985, 0.840, 3.095, 29.801 ], "heli_params": [ -3.041, -0.657, 2.852, 5.997, -1.627, 29.969 ], "bp2_params": [ 0.128, -0.224, -0.719, 6.935, -1.497, -0.915 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.985, "simple_Twist": 27.934, "simple_hRise": 2.841, "simple_hTwist": 28.114 }, { "index": 7, "nt1": "///B/9", "nt2": "///B/107", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 161, "helix_index": 87, "strand1": "GC", "strand2": "CG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.169, "helical_rise_std": 0.020, "helical_radius": 8.759, "helical_radius_std": 0.894, "helical_axis": [ 0.452, 0.031, -0.892 ], "point1": [ 183.451, 143.715, 86.522 ], "point2": [ 184.883, 143.812, 83.695 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///B/14", "nt2": "///B/66", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.187, -0.280, -0.649, 4.223, 0.805, 0.640 ], "step_params": [ 0.281, -1.841, 3.199, -0.266, 0.408, 37.906 ], "heli_params": [ -2.885, -0.466, 3.178, 0.628, 0.409, 37.909 ], "bp2_params": [ 0.169, -0.246, -0.606, 3.309, -2.137, 2.824 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.199, "simple_Twist": 35.724, "simple_hRise": 3.177, "simple_hTwist": 35.727 }, { "index": 2, "nt1": "///B/15", "nt2": "///B/65", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 162, "helix_index": 87, "strand1": "GAAGAG", "strand2": "CUUCUC", "bp_type": "||||||", "helix_form": ".AA..", "helical_rise": 2.658, "helical_rise_std": 0.419, "helical_radius": 9.562, "helical_radius_std": 0.699, "helical_axis": [ 0.520, 0.339, -0.784 ], "point1": [ 183.637, 146.042, 80.510 ], "point2": [ 190.599, 150.578, 70.002 ], "num_pairs": 6, "pairs": [ { "index": 1, "nt1": "///B/16", "nt2": "///B/63", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.229, -0.222, -0.892, -9.086, -3.066, 2.878 ], "step_params": [ 0.486, -2.160, 3.206, -0.984, 7.096, 29.930 ], "heli_params": [ -5.327, -1.091, 2.619, 13.497, 1.872, 30.756 ], "bp2_params": [ 0.102, -0.223, -0.402, -6.917, 9.873, -0.315 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.206, "simple_Twist": 28.403, "simple_hRise": 2.584, "simple_hTwist": 29.274 }, { "index": 2, "nt1": "///B/17", "nt2": "///B/62", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.102, -0.223, -0.402, -6.917, 9.873, -0.315 ], "step_params": [ 0.303, -1.320, 2.965, -0.906, 11.148, 31.138 ], "heli_params": [ -3.905, -0.661, 2.356, 19.977, 1.623, 33.040 ], "bp2_params": [ 0.044, -0.222, -0.312, 1.817, 1.180, 5.631 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.965, "simple_Twist": 31.464, "simple_hRise": 2.364, "simple_hTwist": 33.345 }, { "index": 3, "nt1": "///B/18", "nt2": "///B/61", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.044, -0.222, -0.312, 1.817, 1.180, 5.631 ], "step_params": [ 0.022, -1.828, 3.085, 1.916, 27.483, 35.542 ], "heli_params": [ -4.346, 0.106, 1.390, 38.679, -2.696, 44.695 ], "bp2_params": [ -0.152, -0.239, -0.718, -2.699, -0.014, 0.213 ], "groove_widths": [ 17.522, null, 19.156, null ], "simple_Rise": 3.085, "simple_Twist": 36.582, "simple_hRise": 1.439, "simple_hTwist": 45.510 }, { "index": 4, "nt1": "///B/19", "nt2": "///B/60", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.152, -0.239, -0.718, -2.699, -0.014, 0.213 ], "step_params": [ -1.010, -2.679, 2.781, -11.182, 5.798, 32.836 ], "heli_params": [ -5.165, 0.277, 2.489, 9.818, 18.936, 35.107 ], "bp2_params": [ 0.077, -0.091, 0.344, 6.269, -1.674, 4.132 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 2.781, "simple_Twist": 31.823, "simple_hRise": 2.475, "simple_hTwist": 34.165 }, { "index": 5, "nt1": "///B/20", "nt2": "///B/59", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.077, -0.091, 0.344, 6.269, -1.674, 4.132 ], "step_params": [ -0.374, -1.124, 3.246, 3.583, 0.192, 30.827 ], "heli_params": [ -2.138, 1.377, 3.176, 0.360, -6.711, 31.030 ], "bp2_params": [ -0.163, -0.255, -0.619, 16.397, -6.831, 2.687 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.246, "simple_Twist": 32.382, "simple_hRise": 3.181, "simple_hTwist": 32.574 }, { "index": 6, "nt1": "///B/21", "nt2": "///B/58", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 163, "helix_index": 87, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": ".", "helical_rise": 3.439, "helical_rise_std": 0.046, "helical_radius": 9.839, "helical_radius_std": 0.757, "helical_axis": [ 0.665, 0.639, 0.387 ], "point1": [ 192.387, 171.924, 63.259 ], "point2": [ 194.675, 174.125, 64.591 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///B/29", "nt2": "///B/49", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.280, -0.255, -0.855, -2.529, 1.639, 0.097 ], "step_params": [ -0.007, -1.431, 3.369, -0.438, 0.993, 38.079 ], "heli_params": [ -2.322, -0.047, 3.332, 1.522, 0.671, 38.093 ], "bp2_params": [ 0.182, -0.225, 0.106, -3.429, -1.663, 1.708 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.369, "simple_Twist": 38.085, "simple_hRise": 3.332, "simple_hTwist": 38.100 }, { "index": 2, "nt1": "///B/30", "nt2": "///B/48", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 164, "helix_index": 87, "strand1": "CC", "strand2": "GG", "bp_type": "||", "helix_form": "A", "helical_rise": 3.825, "helical_rise_std": 0.019, "helical_radius": 9.182, "helical_radius_std": 0.796, "helical_axis": [ -0.349, -0.156, 0.924 ], "point1": [ 182.416, 138.814, 93.737 ], "point2": [ 181.083, 138.218, 97.273 ], "num_pairs": 2, "pairs": [ { "index": 1, "nt1": "///B/68", "nt2": "///B/104", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ 0.165, -0.223, -0.829, -1.904, -1.585, 1.344 ], "step_params": [ 0.577, -2.025, 3.504, -3.057, -2.136, 31.423 ], "heli_params": [ -3.287, -1.670, 3.560, -3.927, 5.619, 31.638 ], "bp2_params": [ 0.161, -0.158, -0.079, -1.330, 1.450, 0.837 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.504, "simple_Twist": 31.365, "simple_hRise": 3.560, "simple_hTwist": 31.580 }, { "index": 2, "nt1": "///B/69", "nt2": "///B/103", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] }, { "index": 165, "helix_index": 87, "strand1": "GGGGG", "strand2": "CCCCC", "bp_type": "|||||", "helix_form": "AAAA", "helical_rise": 3.315, "helical_rise_std": 0.213, "helical_radius": 9.773, "helical_radius_std": 0.982, "helical_axis": [ 0.213, 0.027, 0.977 ], "point1": [ 169.655, 137.289, 129.158 ], "point2": [ 172.513, 137.652, 142.245 ], "num_pairs": 5, "pairs": [ { "index": 1, "nt1": "///B/80", "nt2": "///B/92", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.232, -0.195, -0.033, -0.711, 8.983, 1.750 ], "step_params": [ 0.567, -2.004, 3.323, 6.800, 8.892, 30.665 ], "heli_params": [ -5.044, 0.117, 2.713, 16.154, -12.353, 32.598 ], "bp2_params": [ -0.208, -0.275, -0.858, -3.792, 0.029, 0.043 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.323, "simple_Twist": 30.288, "simple_hRise": 2.703, "simple_hTwist": 32.245 }, { "index": 2, "nt1": "///B/81", "nt2": "///B/91", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.208, -0.275, -0.858, -3.792, 0.029, 0.043 ], "step_params": [ 0.147, -2.006, 3.283, -0.437, 3.924, 32.847 ], "heli_params": [ -4.165, -0.329, 3.027, 6.909, 0.769, 33.077 ], "bp2_params": [ -0.161, -0.202, -0.433, -4.391, 5.698, -0.709 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.283, "simple_Twist": 33.048, "simple_hRise": 3.029, "simple_hTwist": 33.276 }, { "index": 3, "nt1": "///B/82", "nt2": "///B/90", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.161, -0.202, -0.433, -4.391, 5.698, -0.709 ], "step_params": [ 0.639, -1.888, 3.151, 0.094, 0.665, 29.962 ], "heli_params": [ -3.782, -1.218, 3.111, 1.286, -0.182, 29.969 ], "bp2_params": [ -0.232, -0.204, -0.451, 0.277, 5.965, -0.861 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.151, "simple_Twist": 29.817, "simple_hRise": 3.111, "simple_hTwist": 29.824 }, { "index": 4, "nt1": "///B/83", "nt2": "///B/89", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W", "bp1_params": [ -0.232, -0.204, -0.451, 0.277, 5.965, -0.861 ], "step_params": [ 0.300, -1.700, 3.017, -0.500, 1.699, 25.949 ], "heli_params": [ -4.199, -0.791, 2.895, 3.778, 1.111, 26.008 ], "bp2_params": [ -0.145, -0.249, -0.668, 7.558, 6.982, -0.401 ], "groove_widths": [ null, null, null, null ], "simple_Rise": 3.017, "simple_Twist": 25.562, "simple_hRise": 2.893, "simple_hTwist": 25.622 }, { "index": 5, "nt1": "///B/84", "nt2": "///B/88", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" } ] } ], "num_isoCanonPairs": 61, "isoCanonPairs": [ { "index": -1, "helix_index": 2, "nt1": "///A/30", "nt2": "///A/556", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -2, "helix_index": 6, "nt1": "///A/62", "nt2": "///A/92", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -3, "helix_index": 4, "nt1": "///A/67", "nt2": "///A/74", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -4, "helix_index": 8, "nt1": "///A/152", "nt2": "///A/177", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -5, "helix_index": 9, "nt1": "///A/186", "nt2": "///A/217", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -6, "helix_index": 9, "nt1": "///A/197", "nt2": "///A/204", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -7, "helix_index": 12, "nt1": "///A/272", "nt2": "///A/417", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -8, "helix_index": 16, "nt1": "///A/300", "nt2": "///A/451", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -9, "helix_index": 15, "nt1": "///A/344", "nt2": "///A/360", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -10, "helix_index": 15, "nt1": "///A/363", "nt2": "///A/367", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -11, "helix_index": 16, "nt1": "///A/463", "nt2": "///A/2436", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -12, "helix_index": 19, "nt1": "///A/528", "nt2": "///A/555", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -13, "helix_index": 63, "nt1": "///A/577", "nt2": "///A/2047", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -14, "helix_index": 39, "nt1": "///A/591", "nt2": "///A/1269", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -15, "helix_index": 0, "nt1": "///A/606", "nt2": "///A/2062", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -16, "helix_index": 63, "nt1": "///A/608", "nt2": "///A/621", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -17, "helix_index": 63, "nt1": "///A/610", "nt2": "///A/619", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -18, "helix_index": 23, "nt1": "///A/721", "nt2": "///A/853", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -19, "helix_index": 29, "nt1": "///A/745", "nt2": "///A/810", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -20, "helix_index": 30, "nt1": "///A/750", "nt2": "///A/775", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" }, { "index": -21, "helix_index": 31, "nt1": "///A/776", "nt2": "///A/1803", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -22, "helix_index": 0, "nt1": "///A/799", "nt2": "///A/2638", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -23, "helix_index": 28, "nt1": "///A/822", "nt2": "///A/838", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -24, "helix_index": 33, "nt1": "///A/909", "nt2": "///A/962", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -25, "helix_index": 33, "nt1": "///A/911", "nt2": "///A/959", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -26, "helix_index": 38, "nt1": "///A/1057", "nt2": "///A/1196", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -27, "helix_index": 36, "nt1": "///A/1070", "nt2": "///A/1186", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -28, "helix_index": 37, "nt1": "///A/1080", "nt2": "///A/1167", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -29, "helix_index": 0, "nt1": "///A/1095", "nt2": "///A/2780", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -30, "helix_index": 34, "nt1": "///A/1237", "nt2": "///A/1290", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -31, "helix_index": 40, "nt1": "///A/1302", "nt2": "///A/2046", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -32, "helix_index": 42, "nt1": "///A/1352", "nt2": "///A/1648", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -33, "helix_index": 50, "nt1": "///A/1490", "nt2": "///A/1595", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -34, "helix_index": 50, "nt1": "///A/1496", "nt2": "///A/1507", "bp": "G-U", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" }, { "index": -35, "helix_index": 82, "nt1": "///A/1502", "nt2": "///A/2732", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -36, "helix_index": 53, "nt1": "///A/1519", "nt2": "///A/1566", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -37, "helix_index": 53, "nt1": "///A/1573", "nt2": "///A/1594", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -38, "helix_index": 50, "nt1": "///A/1613", "nt2": "///A/1616", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -39, "helix_index": 55, "nt1": "///A/1714", "nt2": "///A/2022", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -40, "helix_index": 55, "nt1": "///A/1719", "nt2": "///A/2019", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -41, "helix_index": 56, "nt1": "///A/1736", "nt2": "///A/1741", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -42, "helix_index": 55, "nt1": "///A/1738", "nt2": "///A/1858", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -43, "helix_index": 57, "nt1": "///A/1781", "nt2": "///A/1785", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -44, "helix_index": 61, "nt1": "///A/1875", "nt2": "///A/1924", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -45, "helix_index": 63, "nt1": "///A/2049", "nt2": "///A/2063", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -46, "helix_index": 46, "nt1": "///A/2122", "nt2": "///A/2225", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -47, "helix_index": 46, "nt1": "///A/2124", "nt2": "///A/2223", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -48, "helix_index": 46, "nt1": "///A/2139", "nt2": "///A/2208", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -49, "helix_index": 68, "nt1": "///A/2168", "nt2": "///A/2181", "bp": "G-C", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -50, "helix_index": 70, "nt1": "///A/2324", "nt2": "///A/2366", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -51, "helix_index": 71, "nt1": "///A/2329", "nt2": "///A/2344", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -52, "helix_index": 71, "nt1": "///A/2331", "nt2": "///A/2343", "bp": "U-A", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -53, "helix_index": 72, "nt1": "///A/2379", "nt2": "///A/2396", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -54, "helix_index": 77, "nt1": "///A/2490", "nt2": "///A/2519", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -55, "helix_index": 78, "nt1": "///A/2494", "nt2": "///A/2516", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -56, "helix_index": 81, "nt1": "///A/2655", "nt2": "///A/2806", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -57, "helix_index": 82, "nt1": "///A/2687", "nt2": "///A/2692", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -58, "helix_index": 83, "nt1": "///A/2818", "nt2": "///A/2918", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -59, "helix_index": 87, "nt1": "///B/27", "nt2": "///B/53", "bp": "A-U", "name": "WC", "Saenger": "20-XX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -60, "helix_index": 87, "nt1": "///B/36", "nt2": "///B/42", "bp": "C-G", "name": "WC", "Saenger": "19-XIX", "LW": "cWW", "DSSR": "cW-W" }, { "index": -61, "helix_index": 87, "nt1": "///B/78", "nt2": "///B/94", "bp": "U-G", "name": "Wobble", "Saenger": "28-XXVIII", "LW": "cWW", "DSSR": "cW-W" } ], "num_coaxStacks": 42, "coaxStacks": [ { "index": 1, "helix_index": 2, "num_stems": 5, "stem_indices": [ 2, 3, 4, 5, 6 ] }, { "index": 2, "helix_index": 4, "num_stems": 3, "stem_indices": [ 8, 9, 10 ] }, { "index": 3, "helix_index": 7, "num_stems": 2, "stem_indices": [ 13, 14 ] }, { "index": 4, "helix_index": 11, "num_stems": 2, "stem_indices": [ 18, 19 ] }, { "index": 5, "helix_index": 12, "num_stems": 3, "stem_indices": [ 20, 21, 22 ] }, { "index": 6, "helix_index": 13, "num_stems": 3, "stem_indices": [ 25, 26, 27 ] }, { "index": 7, "helix_index": 14, "num_stems": 2, "stem_indices": [ 28, 31 ] }, { "index": 8, "helix_index": 15, "num_stems": 2, "stem_indices": [ 30, 29 ] }, { "index": 9, "helix_index": 16, "num_stems": 3, "stem_indices": [ 24, 23, 33 ] }, { "index": 10, "helix_index": 22, "num_stems": 2, "stem_indices": [ 36, 37 ] }, { "index": 11, "helix_index": 24, "num_stems": 2, "stem_indices": [ 39, 40 ] }, { "index": 12, "helix_index": 25, "num_stems": 2, "stem_indices": [ 41, 42 ] }, { "index": 13, "helix_index": 28, "num_stems": 2, "stem_indices": [ 46, 52 ] }, { "index": 14, "helix_index": 30, "num_stems": 4, "stem_indices": [ 49, 48, 50, 51 ] }, { "index": 15, "helix_index": 32, "num_stems": 4, "stem_indices": [ 54, 55, 56, 57 ] }, { "index": 16, "helix_index": 33, "num_stems": 2, "stem_indices": [ 59, 58 ] }, { "index": 17, "helix_index": 34, "num_stems": 5, "stem_indices": [ 61, 60, 53, 72, 73 ] }, { "index": 18, "helix_index": 37, "num_stems": 3, "stem_indices": [ 68, 69, 70 ] }, { "index": 19, "helix_index": 38, "num_stems": 5, "stem_indices": [ 67, 65, 64, 63, 71 ] }, { "index": 20, "helix_index": 39, "num_stems": 2, "stem_indices": [ 74, 75 ] }, { "index": 21, "helix_index": 40, "num_stems": 4, "stem_indices": [ 38, 76, 104, 105 ] }, { "index": 22, "helix_index": 43, "num_stems": 2, "stem_indices": [ 81, 82 ] }, { "index": 23, "helix_index": 44, "num_stems": 3, "stem_indices": [ 77, 78, 103 ] }, { "index": 24, "helix_index": 46, "num_stems": 7, "stem_indices": [ 85, 86, 133, 132, 127, 128, 129 ] }, { "index": 25, "helix_index": 48, "num_stems": 4, "stem_indices": [ 88, 83, 89, 90 ] }, { "index": 26, "helix_index": 49, "num_stems": 2, "stem_indices": [ 91, 92 ] }, { "index": 27, "helix_index": 50, "num_stems": 4, "stem_indices": [ 96, 95, 94, 93 ] }, { "index": 28, "helix_index": 52, "num_stems": 2, "stem_indices": [ 99, 100 ] }, { "index": 29, "helix_index": 53, "num_stems": 2, "stem_indices": [ 97, 101 ] }, { "index": 30, "helix_index": 55, "num_stems": 3, "stem_indices": [ 106, 110, 111 ] }, { "index": 31, "helix_index": 57, "num_stems": 2, "stem_indices": [ 109, 108 ] }, { "index": 32, "helix_index": 58, "num_stems": 2, "stem_indices": [ 142, 143 ] }, { "index": 33, "helix_index": 61, "num_stems": 2, "stem_indices": [ 115, 116 ] }, { "index": 34, "helix_index": 64, "num_stems": 2, "stem_indices": [ 122, 123 ] }, { "index": 35, "helix_index": 65, "num_stems": 3, "stem_indices": [ 124, 125, 126 ] }, { "index": 36, "helix_index": 80, "num_stems": 3, "stem_indices": [ 140, 139, 141 ] }, { "index": 37, "helix_index": 81, "num_stems": 3, "stem_indices": [ 121, 120, 119 ] }, { "index": 38, "helix_index": 82, "num_stems": 5, "stem_indices": [ 146, 147, 148, 149, 150 ] }, { "index": 39, "helix_index": 83, "num_stems": 4, "stem_indices": [ 152, 151, 145, 144 ] }, { "index": 40, "helix_index": 84, "num_stems": 3, "stem_indices": [ 153, 154, 155 ] }, { "index": 41, "helix_index": 85, "num_stems": 4, "stem_indices": [ 156, 157, 158, 159 ] }, { "index": 42, "helix_index": 87, "num_stems": 5, "stem_indices": [ 163, 162, 161, 164, 165 ] } ], "num_stacks": 569, "stacks": [ { "index": 1, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/8,///A/9" }, { "index": 2, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/13,///A/571" }, { "index": 3, "num_nts": 2, "nts_short": "CU", "nts_long": "///A/32,///A/33" }, { "index": 4, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/35,///A/493" }, { "index": 5, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/36,///A/37" }, { "index": 6, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/43,///A/44" }, { "index": 7, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/48,///A/180" }, { "index": 8, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/50,///A/176" }, { "index": 9, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/56,///A/57" }, { "index": 10, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/64,///A/65" }, { "index": 11, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/70,///A/113" }, { "index": 12, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/71,///A/73" }, { "index": 13, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/75,///A/76" }, { "index": 14, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/92,///A/93" }, { "index": 15, "num_nts": 2, "nts_short": "CU", "nts_long": "///A/97,///A/98" }, { "index": 16, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/120,///A/130" }, { "index": 17, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/159,///A/160" }, { "index": 18, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/181,///A/182" }, { "index": 19, "num_nts": 2, "nts_short": "GR", "nts_long": "///A/184,///U/36" }, { "index": 20, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/225,///A/227" }, { "index": 21, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/231,///A/233" }, { "index": 22, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/234,///A/235" }, { "index": 23, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/279,///A/280" }, { "index": 24, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/283,///A/284" }, { "index": 25, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/305,///A/306" }, { "index": 26, "num_nts": 2, "nts_short": "CU", "nts_long": "///A/310,///A/311" }, { "index": 27, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/314,///A/316" }, { "index": 28, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/338,///A/388" }, { "index": 29, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/340,///A/341" }, { "index": 30, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/344,///A/361" }, { "index": 31, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/346,///A/360" }, { "index": 32, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/363,///A/364" }, { "index": 33, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/367,///A/377" }, { "index": 34, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/368,///A/369" }, { "index": 35, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/371,///A/372" }, { "index": 36, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/390,///A/391" }, { "index": 37, "num_nts": 2, "nts_short": "CU", "nts_long": "///A/392,///A/393" }, { "index": 38, "num_nts": 2, "nts_short": "UC", "nts_long": "///A/400,///A/401" }, { "index": 39, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/410,///A/411" }, { "index": 40, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/412,///A/413" }, { "index": 41, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/418,///A/420" }, { "index": 42, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/451,///A/453" }, { "index": 43, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/489,///A/491" }, { "index": 44, "num_nts": 2, "nts_short": "AR", "nts_long": "///A/490,///E/45" }, { "index": 45, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/496,///A/497" }, { "index": 46, "num_nts": 2, "nts_short": "CY", "nts_long": "///A/503,///O/69" }, { "index": 47, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/504,///A/506" }, { "index": 48, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/510,///A/514" }, { "index": 49, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/521,///A/556" }, { "index": 50, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/530,///A/531" }, { "index": 51, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/534,///A/535" }, { "index": 52, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/575,///A/2052" }, { "index": 53, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/588,///A/589" }, { "index": 54, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/591,///A/1259" }, { "index": 55, "num_nts": 2, "nts_short": "CY", "nts_long": "///A/594,///M/21" }, { "index": 56, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/604,///A/605" }, { "index": 57, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/618,///A/2061" }, { "index": 58, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/631,///A/718" }, { "index": 59, "num_nts": 2, "nts_short": "UC", "nts_long": "///A/640,///A/641" }, { "index": 60, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/646,///A/703" }, { "index": 61, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/647,///A/702" }, { "index": 62, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/656,///A/657" }, { "index": 63, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/673,///A/683" }, { "index": 64, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/674,///A/682" }, { "index": 65, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/676,///A/680" }, { "index": 66, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/687,///A/688" }, { "index": 67, "num_nts": 2, "nts_short": "CC", "nts_long": "///A/719,///A/720" }, { "index": 68, "num_nts": 2, "nts_short": "CC", "nts_long": "///A/744,///A/745" }, { "index": 69, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/776,///A/1804" }, { "index": 70, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/785,///A/786" }, { "index": 71, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/791,///A/792" }, { "index": 72, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/794,///A/2642" }, { "index": 73, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/798,///A/836" }, { "index": 74, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/799,///A/1810" }, { "index": 75, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/804,///A/805" }, { "index": 76, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/811,///A/828" }, { "index": 77, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/830,///A/832" }, { "index": 78, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/854,///A/855" }, { "index": 79, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/856,///A/857" }, { "index": 80, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/875,///A/876" }, { "index": 81, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/878,///A/879" }, { "index": 82, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/882,///A/883" }, { "index": 83, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/913,///A/961" }, { "index": 84, "num_nts": 2, "nts_short": "CU", "nts_long": "///A/914,///A/915" }, { "index": 85, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/957,///A/2293" }, { "index": 86, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/977,///A/978" }, { "index": 87, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/998,///A/999" }, { "index": 88, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/1000,///A/1010" }, { "index": 89, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1002,///A/1008" }, { "index": 90, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/1005,///A/1006" }, { "index": 91, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/1026,///A/1027" }, { "index": 92, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/1029,///A/1030" }, { "index": 93, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/1033,///A/1034" }, { "index": 94, "num_nts": 2, "nts_short": "CF", "nts_long": "///A/1041,///L/57" }, { "index": 95, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/1042,///A/1206" }, { "index": 96, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/1051,///A/1189" }, { "index": 97, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/1053,///A/1054" }, { "index": 98, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/1070,///A/1071" }, { "index": 99, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/1075,///A/1076" }, { "index": 100, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1077,///A/1078" }, { "index": 101, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1083,///A/1084" }, { "index": 102, "num_nts": 2, "nts_short": "CU", "nts_long": "///A/1089,///A/1090" }, { "index": 103, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/1094,///A/1095" }, { "index": 104, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/1153,///A/1154" }, { "index": 105, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/1157,///A/1158" }, { "index": 106, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/1170,///A/1171" }, { "index": 107, "num_nts": 2, "nts_short": "GH", "nts_long": "///A/1177,///G/78" }, { "index": 108, "num_nts": 2, "nts_short": "UY", "nts_long": "///A/1178,///G/76" }, { "index": 109, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/1188,///A/1190" }, { "index": 110, "num_nts": 2, "nts_short": "UC", "nts_long": "///A/1195,///A/1196" }, { "index": 111, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/1199,///A/1200" }, { "index": 112, "num_nts": 2, "nts_short": "AR", "nts_long": "///A/1202,///L/51" }, { "index": 113, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1209,///A/1210" }, { "index": 114, "num_nts": 2, "nts_short": "CU", "nts_long": "///A/1216,///A/1217" }, { "index": 115, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/1236,///A/1237" }, { "index": 116, "num_nts": 2, "nts_short": "CU", "nts_long": "///A/1248,///A/1249" }, { "index": 117, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/1263,///A/1267" }, { "index": 118, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1292,///A/1293" }, { "index": 119, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/1295,///A/2089" }, { "index": 120, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/1305,///A/1307" }, { "index": 121, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/1313,///A/1691" }, { "index": 122, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/1315,///A/1690" }, { "index": 123, "num_nts": 2, "nts_short": "CC", "nts_long": "///A/1333,///A/1334" }, { "index": 124, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/1340,///A/1342" }, { "index": 125, "num_nts": 2, "nts_short": "CU", "nts_long": "///A/1344,///A/1345" }, { "index": 126, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/1349,///A/1350" }, { "index": 127, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/1358,///A/1359" }, { "index": 128, "num_nts": 2, "nts_short": "CR", "nts_long": "///A/1364,///N/86" }, { "index": 129, "num_nts": 2, "nts_short": "CC", "nts_long": "///A/1370,///A/1372" }, { "index": 130, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/1382,///A/1642" }, { "index": 131, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1387,///A/1388" }, { "index": 132, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/1403,///A/1407" }, { "index": 133, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/1424,///A/1442" }, { "index": 134, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/1428,///A/1429" }, { "index": 135, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1431,///A/1432" }, { "index": 136, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/1463,///A/1464" }, { "index": 137, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/1483,///A/1484" }, { "index": 138, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/1505,///A/1507" }, { "index": 139, "num_nts": 2, "nts_short": "CC", "nts_long": "///A/1508,///A/1509" }, { "index": 140, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/1511,///A/1512" }, { "index": 141, "num_nts": 2, "nts_short": "CU", "nts_long": "///A/1527,///A/1528" }, { "index": 142, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/1534,///A/1535" }, { "index": 143, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/1577,///A/1578" }, { "index": 144, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/1586,///A/1587" }, { "index": 145, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/1595,///A/1596" }, { "index": 146, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/1599,///A/1600" }, { "index": 147, "num_nts": 2, "nts_short": "CC", "nts_long": "///A/1612,///A/1613" }, { "index": 148, "num_nts": 2, "nts_short": "AW", "nts_long": "///A/1614,///C/213" }, { "index": 149, "num_nts": 2, "nts_short": "CU", "nts_long": "///A/1625,///A/1626" }, { "index": 150, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1637,///A/1638" }, { "index": 151, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/1646,///A/1647" }, { "index": 152, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/1650,///A/1651" }, { "index": 153, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/1653,///A/1656" }, { "index": 154, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/1675,///A/1676" }, { "index": 155, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/1711,///A/1712" }, { "index": 156, "num_nts": 2, "nts_short": "CU", "nts_long": "///A/1715,///A/1716" }, { "index": 157, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/1717,///A/1718" }, { "index": 158, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/1727,///A/1786" }, { "index": 159, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/1744,///A/1792" }, { "index": 160, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/1746,///A/1747" }, { "index": 161, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/1756,///A/1757" }, { "index": 162, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/1764,///A/1765" }, { "index": 163, "num_nts": 2, "nts_short": "CC", "nts_long": "///A/1780,///A/1781" }, { "index": 164, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/1783,///A/1784" }, { "index": 165, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/1799,///A/1800" }, { "index": 166, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/1814,///A/1816" }, { "index": 167, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/1820,///A/1821" }, { "index": 168, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/1835,///A/1836" }, { "index": 169, "num_nts": 2, "nts_short": "AY", "nts_long": "///A/1845,///C/62" }, { "index": 170, "num_nts": 2, "nts_short": "UE", "nts_long": "///A/1849,///C/201" }, { "index": 171, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/1884,///A/1917" }, { "index": 172, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/1926,///A/1927" }, { "index": 173, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/2009,///A/2011" }, { "index": 174, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/2021,///A/2026" }, { "index": 175, "num_nts": 2, "nts_short": "UC", "nts_long": "///A/2024,///A/2025" }, { "index": 176, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/2038,///A/2039" }, { "index": 177, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/2090,///A/2091" }, { "index": 178, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/2099,///A/2100" }, { "index": 179, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/2103,///A/2104" }, { "index": 180, "num_nts": 2, "nts_short": "UF", "nts_long": "///A/2105,///W/319" }, { "index": 181, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/2115,///A/2263" }, { "index": 182, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/2116,///A/2262" }, { "index": 183, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/2120,///A/2121" }, { "index": 184, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/2127,///A/2128" }, { "index": 185, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/2140,///A/2148" }, { "index": 186, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/2143,///A/2144" }, { "index": 187, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/2152,///A/2203" }, { "index": 188, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/2153,///A/2154" }, { "index": 189, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/2158,///A/2187" }, { "index": 190, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/2159,///A/2160" }, { "index": 191, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/2172,///A/2173" }, { "index": 192, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/2176,///A/2177" }, { "index": 193, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/2179,///A/2180" }, { "index": 194, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/2188,///A/2189" }, { "index": 195, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/2190,///A/2191" }, { "index": 196, "num_nts": 2, "nts_short": "UC", "nts_long": "///A/2192,///A/2193" }, { "index": 197, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/2195,///A/2200" }, { "index": 198, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/2197,///A/2199" }, { "index": 199, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/2204,///A/2205" }, { "index": 200, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/2217,///A/2218" }, { "index": 201, "num_nts": 2, "nts_short": "CU", "nts_long": "///A/2222,///A/2223" }, { "index": 202, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/2243,///A/2244" }, { "index": 203, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/2249,///A/2250" }, { "index": 204, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/2273,///A/2463" }, { "index": 205, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/2309,///A/2310" }, { "index": 206, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/2312,///A/2417" }, { "index": 207, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/2314,///A/2354" }, { "index": 208, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/2330,///A/2331" }, { "index": 209, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/2343,///A/2344" }, { "index": 210, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/2351,///A/2352" }, { "index": 211, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/2356,///A/2357" }, { "index": 212, "num_nts": 2, "nts_short": "CC", "nts_long": "///A/2384,///A/2385" }, { "index": 213, "num_nts": 2, "nts_short": "UC", "nts_long": "///A/2392,///A/2393" }, { "index": 214, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/2399,///A/2400" }, { "index": 215, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/2402,///A/2409" }, { "index": 216, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/2419,///A/2420" }, { "index": 217, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/2425,///A/2426" }, { "index": 218, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/2427,///A/2428" }, { "index": 219, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/2432,///A/2444" }, { "index": 220, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/2433,///A/2434" }, { "index": 221, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/2447,///A/2448" }, { "index": 222, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/2454,///A/2456" }, { "index": 223, "num_nts": 2, "nts_short": "UC", "nts_long": "///A/2467,///A/2470" }, { "index": 224, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/2488,///A/2526" }, { "index": 225, "num_nts": 2, "nts_short": "UC", "nts_long": "///A/2489,///A/2490" }, { "index": 226, "num_nts": 2, "nts_short": "UR", "nts_long": "///A/2521,///W/353" }, { "index": 227, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/2549,///A/2596" }, { "index": 228, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/2564,///A/2565" }, { "index": 229, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/2574,///A/2575" }, { "index": 230, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/2576,///A/2595" }, { "index": 231, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/2581,///A/2586" }, { "index": 232, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/2582,///A/2583" }, { "index": 233, "num_nts": 2, "nts_short": "UC", "nts_long": "///A/2584,///A/2585" }, { "index": 234, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/2593,///A/2594" }, { "index": 235, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/2621,///A/2632" }, { "index": 236, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/2624,///A/2628" }, { "index": 237, "num_nts": 2, "nts_short": "UQ", "nts_long": "///A/2625,///W/318" }, { "index": 238, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/2626,///A/2627" }, { "index": 239, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/2646,///A/2647" }, { "index": 240, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/2654,///A/2655" }, { "index": 241, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/2659,///A/2918" }, { "index": 242, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/2697,///A/2698" }, { "index": 243, "num_nts": 2, "nts_short": "UC", "nts_long": "///A/2718,///A/2742" }, { "index": 244, "num_nts": 2, "nts_short": "AY", "nts_long": "///A/2719,///J/3" }, { "index": 245, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/2740,///A/2743" }, { "index": 246, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/2754,///A/2756" }, { "index": 247, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/2760,///A/2761" }, { "index": 248, "num_nts": 2, "nts_short": "CC", "nts_long": "///A/2798,///A/2799" }, { "index": 249, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/2823,///A/2824" }, { "index": 250, "num_nts": 2, "nts_short": "CC", "nts_long": "///A/2839,///A/2840" }, { "index": 251, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/2863,///A/2864" }, { "index": 252, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/2881,///A/2882" }, { "index": 253, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/2890,///A/2891" }, { "index": 254, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/2893,///A/2894" }, { "index": 255, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/2907,///A/2908" }, { "index": 256, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/2924,///A/2925" }, { "index": 257, "num_nts": 2, "nts_short": "GR", "nts_long": "///B/10,///Q/79" }, { "index": 258, "num_nts": 2, "nts_short": "AG", "nts_long": "///B/13,///B/107" }, { "index": 259, "num_nts": 2, "nts_short": "GG", "nts_long": "///B/16,///B/65" }, { "index": 260, "num_nts": 2, "nts_short": "UC", "nts_long": "///B/33,///B/34" }, { "index": 261, "num_nts": 2, "nts_short": "AA", "nts_long": "///B/43,///B/44" }, { "index": 262, "num_nts": 2, "nts_short": "GA", "nts_long": "///B/49,///B/50" }, { "index": 263, "num_nts": 2, "nts_short": "CC", "nts_long": "///B/63,///B/106" }, { "index": 264, "num_nts": 2, "nts_short": "CG", "nts_long": "///B/69,///B/70" }, { "index": 265, "num_nts": 2, "nts_short": "AA", "nts_long": "///B/113,///B/114" }, { "index": 266, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/15,///A/14,///A/572" }, { "index": 267, "num_nts": 3, "nts_short": "AAG", "nts_long": "///A/52,///A/53,///A/54" }, { "index": 268, "num_nts": 3, "nts_short": "GUG", "nts_long": "///A/59,///A/74,///A/60" }, { "index": 269, "num_nts": 3, "nts_short": "CAC", "nts_long": "///A/66,///A/67,///A/68" }, { "index": 270, "num_nts": 3, "nts_short": "UAA", "nts_long": "///A/89,///A/90,///A/91" }, { "index": 271, "num_nts": 3, "nts_short": "GGR", "nts_long": "///A/122,///A/123,///U/19" }, { "index": 272, "num_nts": 3, "nts_short": "AAF", "nts_long": "///A/126,///A/125,///U/18" }, { "index": 273, "num_nts": 3, "nts_short": "CGU", "nts_long": "///A/136,///A/137,///A/138" }, { "index": 274, "num_nts": 3, "nts_short": "AAU", "nts_long": "///A/161,///A/162,///A/163" }, { "index": 275, "num_nts": 3, "nts_short": "GGG", "nts_long": "///A/191,///A/192,///A/208" }, { "index": 276, "num_nts": 3, "nts_short": "ACA", "nts_long": "///A/202,///A/201,///A/2459" }, { "index": 277, "num_nts": 3, "nts_short": "AAA", "nts_long": "///A/226,///A/469,///A/470" }, { "index": 278, "num_nts": 3, "nts_short": "GGC", "nts_long": "///A/245,///A/257,///A/256" }, { "index": 279, "num_nts": 3, "nts_short": "GGA", "nts_long": "///A/251,///A/253,///A/254" }, { "index": 280, "num_nts": 3, "nts_short": "CGG", "nts_long": "///A/252,///A/250,///A/255" }, { "index": 281, "num_nts": 3, "nts_short": "AUC", "nts_long": "///A/265,///A/266,///A/267" }, { "index": 282, "num_nts": 3, "nts_short": "ACU", "nts_long": "///A/281,///A/291,///A/292" }, { "index": 283, "num_nts": 3, "nts_short": "UGC", "nts_long": "///A/285,///A/287,///A/288" }, { "index": 284, "num_nts": 3, "nts_short": "GGG", "nts_long": "///A/295,///A/296,///A/297" }, { "index": 285, "num_nts": 3, "nts_short": "UCG", "nts_long": "///A/298,///A/272,///A/471" }, { "index": 286, "num_nts": 3, "nts_short": "AGC", "nts_long": "///A/302,///A/300,///A/468" }, { "index": 287, "num_nts": 3, "nts_short": "AGG", "nts_long": "///A/333,///A/334,///A/335" }, { "index": 288, "num_nts": 3, "nts_short": "UAA", "nts_long": "///A/336,///A/389,///A/337" }, { "index": 289, "num_nts": 3, "nts_short": "CUG", "nts_long": "///A/349,///A/350,///A/351" }, { "index": 290, "num_nts": 3, "nts_short": "AAC", "nts_long": "///A/355,///A/376,///A/379" }, { "index": 291, "num_nts": 3, "nts_short": "UGU", "nts_long": "///A/381,///A/382,///A/383" }, { "index": 292, "num_nts": 3, "nts_short": "GGG", "nts_long": "///A/419,///A/447,///A/446" }, { "index": 293, "num_nts": 3, "nts_short": "UAG", "nts_long": "///A/439,///A/438,///A/458" }, { "index": 294, "num_nts": 3, "nts_short": "ACC", "nts_long": "///A/459,///A/460,///A/461" }, { "index": 295, "num_nts": 3, "nts_short": "AAG", "nts_long": "///A/501,///A/494,///A/520" }, { "index": 296, "num_nts": 3, "nts_short": "GUC", "nts_long": "///A/523,///A/522,///A/555" }, { "index": 297, "num_nts": 3, "nts_short": "UGU", "nts_long": "///A/577,///A/2064,///A/2063" }, { "index": 298, "num_nts": 3, "nts_short": "AGF", "nts_long": "///A/578,///A/2050,///L/25" }, { "index": 299, "num_nts": 3, "nts_short": "AUA", "nts_long": "///A/592,///A/590,///A/1260" }, { "index": 300, "num_nts": 3, "nts_short": "UUF", "nts_long": "///A/633,///A/632,///E/90" }, { "index": 301, "num_nts": 3, "nts_short": "GGC", "nts_long": "///A/648,///A/671,///A/672" }, { "index": 302, "num_nts": 3, "nts_short": "GUG", "nts_long": "///A/665,///A/651,///A/666" }, { "index": 303, "num_nts": 3, "nts_short": "AAA", "nts_long": "///A/677,///A/678,///A/679" }, { "index": 304, "num_nts": 3, "nts_short": "GUG", "nts_long": "///A/707,///A/708,///A/709" }, { "index": 305, "num_nts": 3, "nts_short": "GGU", "nts_long": "///A/759,///A/760,///A/761" }, { "index": 306, "num_nts": 3, "nts_short": "UGG", "nts_long": "///A/809,///A/810,///A/812" }, { "index": 307, "num_nts": 3, "nts_short": "GGA", "nts_long": "///A/824,///A/822,///A/841" }, { "index": 308, "num_nts": 3, "nts_short": "UGA", "nts_long": "///A/826,///A/827,///A/829" }, { "index": 309, "num_nts": 3, "nts_short": "CAG", "nts_long": "///A/885,///A/987,///A/988" }, { "index": 310, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/891,///A/894,///A/893" }, { "index": 311, "num_nts": 3, "nts_short": "GUC", "nts_long": "///A/895,///A/979,///A/980" }, { "index": 312, "num_nts": 3, "nts_short": "CUU", "nts_long": "///A/899,///A/900,///A/901" }, { "index": 313, "num_nts": 3, "nts_short": "UGC", "nts_long": "///A/907,///A/963,///A/962" }, { "index": 314, "num_nts": 3, "nts_short": "AUU", "nts_long": "///A/917,///A/918,///A/919" }, { "index": 315, "num_nts": 3, "nts_short": "GGA", "nts_long": "///A/920,///A/921,///A/922" }, { "index": 316, "num_nts": 3, "nts_short": "AGU", "nts_long": "///A/952,///A/953,///A/954" }, { "index": 317, "num_nts": 3, "nts_short": "ACU", "nts_long": "///A/956,///A/959,///A/960" }, { "index": 318, "num_nts": 3, "nts_short": "UGC", "nts_long": "///A/966,///A/967,///A/968" }, { "index": 319, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/1022,///A/1021,///A/1036" }, { "index": 320, "num_nts": 3, "nts_short": "GAC", "nts_long": "///A/1024,///A/1025,///A/1028" }, { "index": 321, "num_nts": 3, "nts_short": "UAA", "nts_long": "///A/1050,///A/1056,///A/1055" }, { "index": 322, "num_nts": 3, "nts_short": "AGA", "nts_long": "///A/1059,///A/1057,///A/1197" }, { "index": 323, "num_nts": 3, "nts_short": "AAU", "nts_long": "///A/1066,///A/1067,///A/1069" }, { "index": 324, "num_nts": 3, "nts_short": "GGC", "nts_long": "///A/1082,///A/1166,///A/1167" }, { "index": 325, "num_nts": 3, "nts_short": "AAG", "nts_long": "///A/1097,///A/1096,///A/2780" }, { "index": 326, "num_nts": 3, "nts_short": "AAA", "nts_long": "///A/1175,///A/1174,///A/2547" }, { "index": 327, "num_nts": 3, "nts_short": "GGC", "nts_long": "///A/1247,///A/1280,///A/1281" }, { "index": 328, "num_nts": 3, "nts_short": "CAC", "nts_long": "///A/1261,///A/1269,///A/1270" }, { "index": 329, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/1264,///A/1265,///A/1266" }, { "index": 330, "num_nts": 3, "nts_short": "AUR", "nts_long": "///A/1287,///A/1289,///I/18" }, { "index": 331, "num_nts": 3, "nts_short": "GUG", "nts_long": "///A/1320,///A/1321,///A/1322" }, { "index": 332, "num_nts": 3, "nts_short": "CGU", "nts_long": "///A/1337,///A/1338,///A/1684" }, { "index": 333, "num_nts": 3, "nts_short": "UAC", "nts_long": "///A/1351,///A/1648,///A/1649" }, { "index": 334, "num_nts": 3, "nts_short": "AAG", "nts_long": "///A/1360,///A/1361,///A/1362" }, { "index": 335, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/1371,///A/1654,///A/1661" }, { "index": 336, "num_nts": 3, "nts_short": "GGU", "nts_long": "///A/1377,///A/1378,///A/1379" }, { "index": 337, "num_nts": 3, "nts_short": "CAU", "nts_long": "///A/1384,///A/1381,///A/1436" }, { "index": 338, "num_nts": 3, "nts_short": "AAA", "nts_long": "///A/1404,///A/1405,///A/1406" }, { "index": 339, "num_nts": 3, "nts_short": "GAC", "nts_long": "///A/1420,///A/1421,///A/1422" }, { "index": 340, "num_nts": 3, "nts_short": "UAC", "nts_long": "///A/1433,///A/1434,///A/1437" }, { "index": 341, "num_nts": 3, "nts_short": "CAU", "nts_long": "///A/1455,///A/1456,///A/1457" }, { "index": 342, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/1462,///A/1461,///A/1631" }, { "index": 343, "num_nts": 3, "nts_short": "UGC", "nts_long": "///A/1498,///A/2731,///A/2732" }, { "index": 344, "num_nts": 3, "nts_short": "UGG", "nts_long": "///A/1501,///A/1502,///A/1503" }, { "index": 345, "num_nts": 3, "nts_short": "GGU", "nts_long": "///A/1537,///A/1546,///A/1547" }, { "index": 346, "num_nts": 3, "nts_short": "CAU", "nts_long": "///A/1552,///A/1553,///A/1554" }, { "index": 347, "num_nts": 3, "nts_short": "AAG", "nts_long": "///A/1555,///A/1556,///A/1557" }, { "index": 348, "num_nts": 3, "nts_short": "CUG", "nts_long": "///A/1652,///A/1666,///A/1665" }, { "index": 349, "num_nts": 3, "nts_short": "GAG", "nts_long": "///A/1696,///A/1697,///A/1698" }, { "index": 350, "num_nts": 3, "nts_short": "AAC", "nts_long": "///A/1699,///A/1700,///A/1701" }, { "index": 351, "num_nts": 3, "nts_short": "AAU", "nts_long": "///A/1710,///A/1709,///A/2755" }, { "index": 352, "num_nts": 3, "nts_short": "GGG", "nts_long": "///A/1752,///A/1785,///A/1782" }, { "index": 353, "num_nts": 3, "nts_short": "UGC", "nts_long": "///A/1759,///A/1773,///A/1772" }, { "index": 354, "num_nts": 3, "nts_short": "UUA", "nts_long": "///A/1806,///A/1807,///A/1813" }, { "index": 355, "num_nts": 3, "nts_short": "CAA", "nts_long": "///A/1811,///A/2616,///A/1812" }, { "index": 356, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/1828,///A/1848,///A/1850" }, { "index": 357, "num_nts": 3, "nts_short": "GAC", "nts_long": "///A/2033,///A/2034,///A/2035" }, { "index": 358, "num_nts": 3, "nts_short": "GUG", "nts_long": "///A/2056,///A/2057,///A/2058" }, { "index": 359, "num_nts": 3, "nts_short": "CAA", "nts_long": "///A/2079,///A/2080,///A/2643" }, { "index": 360, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/2086,///A/2087,///A/2088" }, { "index": 361, "num_nts": 3, "nts_short": "CCC", "nts_long": "///A/2092,///A/2093,///A/2094" }, { "index": 362, "num_nts": 3, "nts_short": "GCC", "nts_long": "///A/2096,///A/2472,///A/2471" }, { "index": 363, "num_nts": 3, "nts_short": "AGC", "nts_long": "///A/2111,///A/2112,///A/2113" }, { "index": 364, "num_nts": 3, "nts_short": "AGU", "nts_long": "///A/2163,///A/2185,///A/2184" }, { "index": 365, "num_nts": 3, "nts_short": "AAC", "nts_long": "///A/2164,///A/2165,///A/2166" }, { "index": 366, "num_nts": 3, "nts_short": "CCU", "nts_long": "///A/2207,///A/2208,///A/2209" }, { "index": 367, "num_nts": 3, "nts_short": "CUA", "nts_long": "///A/2238,///A/2239,///A/2241" }, { "index": 368, "num_nts": 3, "nts_short": "CAG", "nts_long": "///A/2255,///A/2256,///A/2257" }, { "index": 369, "num_nts": 3, "nts_short": "AGG", "nts_long": "///A/2298,///A/2299,///A/2300" }, { "index": 370, "num_nts": 3, "nts_short": "AUA", "nts_long": "///A/2316,///A/2373,///A/2375" }, { "index": 371, "num_nts": 3, "nts_short": "GAG", "nts_long": "///A/2318,///A/2317,///A/2319" }, { "index": 372, "num_nts": 3, "nts_short": "GGC", "nts_long": "///A/2332,///A/2333,///A/2342" }, { "index": 373, "num_nts": 3, "nts_short": "AGA", "nts_long": "///A/2358,///A/2360,///A/2364" }, { "index": 374, "num_nts": 3, "nts_short": "CGG", "nts_long": "///A/2376,///A/2374,///A/2401" }, { "index": 375, "num_nts": 3, "nts_short": "CGA", "nts_long": "///A/2379,///A/2378,///A/2398" }, { "index": 376, "num_nts": 3, "nts_short": "GGC", "nts_long": "///A/2380,///A/2396,///A/2397" }, { "index": 377, "num_nts": 3, "nts_short": "GGA", "nts_long": "///A/2404,///A/2408,///A/2407" }, { "index": 378, "num_nts": 3, "nts_short": "CGC", "nts_long": "///A/2424,///A/2450,///A/2449" }, { "index": 379, "num_nts": 3, "nts_short": "GCC", "nts_long": "///A/2429,///A/2446,///A/2445" }, { "index": 380, "num_nts": 3, "nts_short": "ACG", "nts_long": "///A/2455,///A/2453,///A/2458" }, { "index": 381, "num_nts": 3, "nts_short": "GGA", "nts_long": "///A/2515,///A/2516,///A/2517" }, { "index": 382, "num_nts": 3, "nts_short": "GGU", "nts_long": "///A/2518,///A/2519,///A/2520" }, { "index": 383, "num_nts": 3, "nts_short": "GAG", "nts_long": "///A/2552,///A/2794,///A/2572" }, { "index": 384, "num_nts": 3, "nts_short": "CUU", "nts_long": "///A/2556,///A/2557,///A/2559" }, { "index": 385, "num_nts": 3, "nts_short": "AUU", "nts_long": "///A/2590,///A/2591,///A/2592" }, { "index": 386, "num_nts": 3, "nts_short": "GGG", "nts_long": "///A/2617,///A/2636,///A/2637" }, { "index": 387, "num_nts": 3, "nts_short": "GAG", "nts_long": "///A/2672,///A/2673,///A/2674" }, { "index": 388, "num_nts": 3, "nts_short": "AGA", "nts_long": "///A/2689,///A/2690,///A/2691" }, { "index": 389, "num_nts": 3, "nts_short": "GAC", "nts_long": "///A/2703,///A/2704,///A/2705" }, { "index": 390, "num_nts": 3, "nts_short": "GCU", "nts_long": "///A/2711,///A/2712,///A/2713" }, { "index": 391, "num_nts": 3, "nts_short": "CAA", "nts_long": "///A/2733,///A/2734,///A/2735" }, { "index": 392, "num_nts": 3, "nts_short": "UAG", "nts_long": "///A/2749,///A/2750,///A/2751" }, { "index": 393, "num_nts": 3, "nts_short": "ACG", "nts_long": "///A/2762,///A/2763,///A/2764" }, { "index": 394, "num_nts": 3, "nts_short": "CCA", "nts_long": "///A/2817,///A/2818,///A/2819" }, { "index": 395, "num_nts": 3, "nts_short": "AAG", "nts_long": "///A/2844,///A/2846,///A/2847" }, { "index": 396, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/2859,///A/2904,///A/2860" }, { "index": 397, "num_nts": 3, "nts_short": "GAG", "nts_long": "///A/2868,///A/2869,///A/2870" }, { "index": 398, "num_nts": 3, "nts_short": "AAG", "nts_long": "///A/2875,///A/2876,///A/2877" }, { "index": 399, "num_nts": 3, "nts_short": "CGA", "nts_long": "///A/2883,///A/2884,///A/2885" }, { "index": 400, "num_nts": 3, "nts_short": "UCG", "nts_long": "///A/2909,///A/2910,///A/2911" }, { "index": 401, "num_nts": 3, "nts_short": "GGC", "nts_long": "///B/14,///B/67,///B/68" }, { "index": 402, "num_nts": 3, "nts_short": "GGU", "nts_long": "///B/21,///B/22,///B/54" }, { "index": 403, "num_nts": 3, "nts_short": "CCC", "nts_long": "///B/36,///B/35,///B/47" }, { "index": 404, "num_nts": 3, "nts_short": "AGU", "nts_long": "///B/51,///B/52,///B/53" }, { "index": 405, "num_nts": 3, "nts_short": "AAG", "nts_long": "///B/64,///B/105,///B/104" }, { "index": 406, "num_nts": 4, "nts_short": "CAAA", "nts_long": "///A/62,///A/61,///A/94,///A/95" }, { "index": 407, "num_nts": 4, "nts_short": "AAUC", "nts_long": "///A/84,///A/102,///A/103,///A/104" }, { "index": 408, "num_nts": 4, "nts_short": "GAUU", "nts_long": "///A/109,///A/110,///A/111,///A/112" }, { "index": 409, "num_nts": 4, "nts_short": "AAAG", "nts_long": "///A/275,///A/274,///A/273,///A/417" }, { "index": 410, "num_nts": 4, "nts_short": "UGUG", "nts_long": "///A/313,///A/312,///A/405,///A/406" }, { "index": 411, "num_nts": 4, "nts_short": "UAAA", "nts_long": "///A/320,///A/326,///A/325,///A/324" }, { "index": 412, "num_nts": 4, "nts_short": "ACCA", "nts_long": "///A/429,///A/430,///A/432,///A/431" }, { "index": 413, "num_nts": 4, "nts_short": "UGAA", "nts_long": "///A/434,///A/435,///A/437,///A/436" }, { "index": 414, "num_nts": 4, "nts_short": "AGGU", "nts_long": "///A/582,///A/583,///A/599,///A/598" }, { "index": 415, "num_nts": 4, "nts_short": "GAAU", "nts_long": "///A/585,///A/584,///A/600,///A/601" }, { "index": 416, "num_nts": 4, "nts_short": "GAAC", "nts_long": "///A/617,///A/616,///A/2062,///A/2065" }, { "index": 417, "num_nts": 4, "nts_short": "AAUG", "nts_long": "///A/623,///A/1302,///A/1303,///A/1304" }, { "index": 418, "num_nts": 4, "nts_short": "AGAU", "nts_long": "///A/658,///A/660,///A/661,///A/662" }, { "index": 419, "num_nts": 4, "nts_short": "AAAG", "nts_long": "///A/689,///A/690,///A/692,///A/693" }, { "index": 420, "num_nts": 4, "nts_short": "AAGG", "nts_long": "///A/715,///A/717,///A/716,///A/848" }, { "index": 421, "num_nts": 4, "nts_short": "CGAG", "nts_long": "///A/779,///A/780,///A/808,///A/807" }, { "index": 422, "num_nts": 4, "nts_short": "GAAU", "nts_long": "///A/846,///A/847,///A/849,///A/850" }, { "index": 423, "num_nts": 4, "nts_short": "CGGU", "nts_long": "///A/859,///A/1290,///A/1238,///A/1239" }, { "index": 424, "num_nts": 4, "nts_short": "CGAU", "nts_long": "///A/1017,///A/1018,///A/1019,///A/1229" }, { "index": 425, "num_nts": 4, "nts_short": "UGGC", "nts_long": "///A/1081,///A/1080,///A/1168,///A/1169" }, { "index": 426, "num_nts": 4, "nts_short": "UGGC", "nts_long": "///A/1091,///A/1093,///A/1156,///A/1155" }, { "index": 427, "num_nts": 4, "nts_short": "AAAC", "nts_long": "///A/1172,///A/1073,///A/1072,///A/1180" }, { "index": 428, "num_nts": 4, "nts_short": "AAGG", "nts_long": "///A/1243,///A/1244,///A/1245,///A/1246" }, { "index": 429, "num_nts": 4, "nts_short": "GGGU", "nts_long": "///A/1252,///A/1276,///A/1275,///A/1274" }, { "index": 430, "num_nts": 4, "nts_short": "CUGC", "nts_long": "///A/1390,///A/1391,///A/1416,///A/1415" }, { "index": 431, "num_nts": 4, "nts_short": "CGGC", "nts_long": "///A/1396,///A/1397,///A/1410,///A/1409" }, { "index": 432, "num_nts": 4, "nts_short": "GAAG", "nts_long": "///A/1399,///A/1398,///A/1412,///A/1413" }, { "index": 433, "num_nts": 4, "nts_short": "UGGC", "nts_long": "///A/1458,///A/1460,///A/1630,///A/1629" }, { "index": 434, "num_nts": 4, "nts_short": "GAAG", "nts_long": "///A/1467,///A/1465,///A/1627,///A/1628" }, { "index": 435, "num_nts": 4, "nts_short": "GGAY", "nts_long": "///A/1475,///A/1616,///A/1615,///C/83" }, { "index": 436, "num_nts": 4, "nts_short": "GGAG", "nts_long": "///A/1478,///A/1479,///A/1480,///A/1481" }, { "index": 437, "num_nts": 4, "nts_short": "GAAU", "nts_long": "///A/1486,///A/1485,///A/1601,///A/1603" }, { "index": 438, "num_nts": 4, "nts_short": "UAGC", "nts_long": "///A/1523,///A/1562,///A/1563,///A/1564" }, { "index": 439, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///A/1538,///A/1542,///A/1541,///A/1540" }, { "index": 440, "num_nts": 4, "nts_short": "CAAC", "nts_long": "///A/1605,///A/1606,///A/1608,///A/1609" }, { "index": 441, "num_nts": 4, "nts_short": "CCGG", "nts_long": "///A/1660,///A/1662,///A/1658,///A/1664" }, { "index": 442, "num_nts": 4, "nts_short": "CGAA", "nts_long": "///A/1670,///A/1671,///A/1339,///A/1679" }, { "index": 443, "num_nts": 4, "nts_short": "AAAG", "nts_long": "///A/1672,///A/1685,///A/1686,///A/1687" }, { "index": 444, "num_nts": 4, "nts_short": "AGAU", "nts_long": "///A/1677,///A/1678,///A/1680,///A/1681" }, { "index": 445, "num_nts": 4, "nts_short": "GAUC", "nts_long": "///A/1719,///A/1713,///A/2022,///A/2023" }, { "index": 446, "num_nts": 4, "nts_short": "UAAC", "nts_long": "///A/1738,///A/2006,///A/2007,///A/2008" }, { "index": 447, "num_nts": 4, "nts_short": "CAAG", "nts_long": "///A/1766,///A/1767,///A/1768,///A/1769" }, { "index": 448, "num_nts": 4, "nts_short": "AAUA", "nts_long": "///A/1788,///A/1789,///A/1790,///A/1791" }, { "index": 449, "num_nts": 4, "nts_short": "GACU", "nts_long": "///A/1793,///A/2018,///A/2019,///A/2020" }, { "index": 450, "num_nts": 4, "nts_short": "CAAG", "nts_long": "///A/1829,///A/1831,///A/1832,///A/1833" }, { "index": 451, "num_nts": 4, "nts_short": "UAAG", "nts_long": "///A/1837,///A/1838,///A/1839,///A/1840" }, { "index": 452, "num_nts": 4, "nts_short": "UGGR", "nts_long": "///A/2040,///A/2041,///A/1306,///N/15" }, { "index": 453, "num_nts": 4, "nts_short": "CGGC", "nts_long": "///A/2072,///A/2806,///A/2656,///A/2657" }, { "index": 454, "num_nts": 4, "nts_short": "GGGA", "nts_long": "///A/2130,///A/2129,///A/2219,///A/2220" }, { "index": 455, "num_nts": 4, "nts_short": "GGUG", "nts_long": "///A/2149,///A/2139,///A/2138,///A/2210" }, { "index": 456, "num_nts": 4, "nts_short": "GUGG", "nts_long": "///A/2264,///A/2265,///A/2266,///A/2268" }, { "index": 457, "num_nts": 4, "nts_short": "GCAG", "nts_long": "///A/2306,///A/2292,///A/2307,///A/2308" }, { "index": 458, "num_nts": 4, "nts_short": "AUGG", "nts_long": "///A/2362,///A/2325,///A/2366,///A/2367" }, { "index": 459, "num_nts": 4, "nts_short": "AGAA", "nts_long": "///A/2383,///A/2382,///A/2381,///A/2395" }, { "index": 460, "num_nts": 4, "nts_short": "CGUN", "nts_long": "///A/2469,///A/839,///A/831,///C/226" }, { "index": 461, "num_nts": 4, "nts_short": "AAGG", "nts_long": "///A/2497,///A/2498,///A/2513,///A/2514" }, { "index": 462, "num_nts": 4, "nts_short": "CGGY", "nts_long": "///A/2525,///A/2524,///A/2523,///W/384" }, { "index": 463, "num_nts": 4, "nts_short": "AGUC", "nts_long": "///A/2560,///A/2561,///A/2562,///A/2563" }, { "index": 464, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///A/2669,///A/2668,///A/2807,///A/2805" }, { "index": 465, "num_nts": 4, "nts_short": "GGGG", "nts_long": "///A/2684,///A/2693,///A/2692,///A/2688" }, { "index": 466, "num_nts": 4, "nts_short": "UGGG", "nts_long": "///A/2716,///A/2717,///A/2748,///A/2747" }, { "index": 467, "num_nts": 4, "nts_short": "CAAG", "nts_long": "///A/2825,///A/2826,///A/2827,///A/2828" }, { "index": 468, "num_nts": 4, "nts_short": "UGGR", "nts_long": "///A/2872,///A/2873,///A/2892,///K/24" }, { "index": 469, "num_nts": 4, "nts_short": "GUGG", "nts_long": "///B/42,///B/32,///B/31,///B/48" }, { "index": 470, "num_nts": 4, "nts_short": "AAGC", "nts_long": "///B/55,///B/56,///B/57,///B/58" }, { "index": 471, "num_nts": 5, "nts_short": "AGAAA", "nts_long": "///A/12,///A/11,///A/10,///A/2658,///A/2919" }, { "index": 472, "num_nts": 5, "nts_short": "GGGAG", "nts_long": "///A/45,///A/218,///A/217,///A/216,///A/215" }, { "index": 473, "num_nts": 5, "nts_short": "GGGGU", "nts_long": "///A/81,///A/82,///A/83,///A/101,///A/99" }, { "index": 474, "num_nts": 5, "nts_short": "UAUCC", "nts_long": "///A/119,///A/150,///A/151,///A/152,///A/153" }, { "index": 475, "num_nts": 5, "nts_short": "CAACC", "nts_long": "///A/186,///A/185,///A/183,///A/482,///A/483" }, { "index": 476, "num_nts": 5, "nts_short": "CUAAU", "nts_long": "///A/204,///A/205,///A/206,///A/207,///A/209" }, { "index": 477, "num_nts": 5, "nts_short": "CAAAU", "nts_long": "///A/228,///A/229,///A/230,///A/2436,///A/2437" }, { "index": 478, "num_nts": 5, "nts_short": "UUAAG", "nts_long": "///A/238,///A/237,///A/236,///A/224,///A/269" }, { "index": 479, "num_nts": 5, "nts_short": "CUGAU", "nts_long": "///A/241,///A/242,///A/243,///A/244,///A/246" }, { "index": 480, "num_nts": 5, "nts_short": "AAAAG", "nts_long": "///A/343,///A/342,///A/366,///A/384,///A/385" }, { "index": 481, "num_nts": 5, "nts_short": "CAAAU", "nts_long": "///A/422,///A/421,///A/448,///A/449,///A/450" }, { "index": 482, "num_nts": 5, "nts_short": "GAGUG", "nts_long": "///A/542,///A/543,///A/544,///A/545,///A/546" }, { "index": 483, "num_nts": 5, "nts_short": "GAAAG", "nts_long": "///A/654,///A/653,///A/652,///A/667,///A/668" }, { "index": 484, "num_nts": 5, "nts_short": "GGCAU", "nts_long": "///A/684,///A/697,///A/698,///A/699,///A/700" }, { "index": 485, "num_nts": 5, "nts_short": "UGAAU", "nts_long": "///A/730,///A/731,///A/821,///A/732,///A/820" }, { "index": 486, "num_nts": 5, "nts_short": "GAAAC", "nts_long": "///A/747,///A/746,///A/781,///A/782,///A/783" }, { "index": 487, "num_nts": 5, "nts_short": "AACAC", "nts_long": "///A/762,///A/763,///A/764,///A/765,///A/766" }, { "index": 488, "num_nts": 5, "nts_short": "GAAAA", "nts_long": "///A/795,///A/797,///A/796,///A/1663,///A/1312" }, { "index": 489, "num_nts": 5, "nts_short": "GAAUU", "nts_long": "///A/946,///A/947,///A/948,///A/949,///A/950" }, { "index": 490, "num_nts": 5, "nts_short": "GAAAG", "nts_long": "///A/1048,///A/1047,///A/1046,///A/1201,///A/1203" }, { "index": 491, "num_nts": 5, "nts_short": "CGCGU", "nts_long": "///A/1181,///A/1185,///A/1186,///A/1068,///A/1187" }, { "index": 492, "num_nts": 5, "nts_short": "GAAAG", "nts_long": "///A/1250,///A/1277,///A/1253,///A/1254,///A/1255" }, { "index": 493, "num_nts": 5, "nts_short": "GGAUR", "nts_long": "///A/1296,///A/629,///A/1291,///A/858,///I/21" }, { "index": 494, "num_nts": 5, "nts_short": "AUCGG", "nts_long": "///A/1326,///A/1327,///A/1366,///A/1367,///A/1363" }, { "index": 495, "num_nts": 5, "nts_short": "GAAAG", "nts_long": "///A/1348,///A/1347,///A/1346,///A/1667,///A/1668" }, { "index": 496, "num_nts": 5, "nts_short": "GAAAG", "nts_long": "///A/1394,///A/1393,///A/1392,///A/1417,///A/1419" }, { "index": 497, "num_nts": 5, "nts_short": "GGGAC", "nts_long": "///A/1470,///A/1471,///A/1472,///A/1473,///A/1474" }, { "index": 498, "num_nts": 5, "nts_short": "GUAAG", "nts_long": "///A/1488,///A/1489,///A/1490,///A/1491,///A/1492" }, { "index": 499, "num_nts": 5, "nts_short": "GCGGA", "nts_long": "///A/1494,///A/1495,///A/1496,///A/1497,///A/1504" }, { "index": 500, "num_nts": 5, "nts_short": "GUGAG", "nts_long": "///A/1566,///A/1567,///A/1568,///A/1569,///A/1571" }, { "index": 501, "num_nts": 5, "nts_short": "GCGGC", "nts_long": "///A/1572,///A/1573,///A/1574,///A/1591,///A/1590" }, { "index": 502, "num_nts": 5, "nts_short": "GAAGA", "nts_long": "///A/1761,///A/1760,///A/1774,///A/1775,///A/1776" }, { "index": 503, "num_nts": 5, "nts_short": "GACGU", "nts_long": "///A/1805,///A/1818,///A/1819,///A/1857,///A/1856" }, { "index": 504, "num_nts": 5, "nts_short": "CGAGU", "nts_long": "///A/1842,///A/1843,///A/1844,///A/1846,///A/1847" }, { "index": 505, "num_nts": 5, "nts_short": "GGUGC", "nts_long": "///A/1868,///A/1869,///A/1870,///A/1871,///A/1872" }, { "index": 506, "num_nts": 5, "nts_short": "UGGAA", "nts_long": "///A/1873,///A/1874,///A/1875,///A/1876,///A/1877" }, { "index": 507, "num_nts": 5, "nts_short": "AAAAG", "nts_long": "///A/1883,///A/1882,///A/1918,///A/1919,///A/1920" }, { "index": 508, "num_nts": 5, "nts_short": "AGGGC", "nts_long": "///A/1885,///A/1886,///A/1887,///A/1912,///A/1911" }, { "index": 509, "num_nts": 5, "nts_short": "GAGGG", "nts_long": "///A/2171,///A/2170,///A/2169,///A/2168,///A/2182" }, { "index": 510, "num_nts": 5, "nts_short": "CUGAG", "nts_long": "///A/2225,///A/2226,///A/2253,///A/2252,///A/2251" }, { "index": 511, "num_nts": 5, "nts_short": "UUCCC", "nts_long": "///A/2320,///A/2321,///A/2322,///A/2323,///A/2324" }, { "index": 512, "num_nts": 5, "nts_short": "AGACA", "nts_long": "///A/2329,///A/2328,///A/2327,///A/2326,///A/2349" }, { "index": 513, "num_nts": 5, "nts_short": "GAGCU", "nts_long": "///A/2368,///A/2369,///A/2370,///A/2371,///A/2372" }, { "index": 514, "num_nts": 5, "nts_short": "ACAAG", "nts_long": "///A/2387,///A/2388,///A/2389,///A/2390,///A/2391" }, { "index": 515, "num_nts": 5, "nts_short": "CCCCC", "nts_long": "///A/2492,///A/2493,///A/2494,///A/2495,///A/2496" }, { "index": 516, "num_nts": 5, "nts_short": "CAUAC", "nts_long": "///A/2546,///A/2571,///A/2548,///A/2570,///A/2569" }, { "index": 517, "num_nts": 5, "nts_short": "CUUAU", "nts_long": "///A/2680,///A/2681,///A/2682,///A/2683,///A/2685" }, { "index": 518, "num_nts": 5, "nts_short": "CAACC", "nts_long": "///A/2687,///A/2686,///A/2694,///A/2695,///A/2696" }, { "index": 519, "num_nts": 5, "nts_short": "GAUGU", "nts_long": "///A/2766,///A/2767,///A/2768,///A/2792,///A/2791" }, { "index": 520, "num_nts": 5, "nts_short": "CAGUG", "nts_long": "///A/2803,///A/2804,///A/2667,///A/2666,///A/2811" }, { "index": 521, "num_nts": 5, "nts_short": "AGUGC", "nts_long": "///A/2831,///A/2832,///A/2833,///A/2915,///A/2914" }, { "index": 522, "num_nts": 5, "nts_short": "AUGAU", "nts_long": "///A/2848,///A/2849,///A/2850,///A/2851,///A/2852" }, { "index": 523, "num_nts": 6, "nts_short": "UAAAAC", "nts_long": "///A/29,///A/28,///A/559,///A/560,///A/561,///A/562" }, { "index": 524, "num_nts": 6, "nts_short": "GGUAAC", "nts_long": "///A/143,///A/142,///A/141,///A/140,///A/139,///A/1449" }, { "index": 525, "num_nts": 6, "nts_short": "CAUAGG", "nts_long": "///A/165,///A/166,///A/167,///A/168,///A/169,///A/170" }, { "index": 526, "num_nts": 6, "nts_short": "GAAAAC", "nts_long": "///A/248,///A/247,///A/258,///A/259,///A/260,///A/261" }, { "index": 527, "num_nts": 6, "nts_short": "CAAAAA", "nts_long": "///A/323,///A/322,///A/268,///A/475,///A/476,///A/477" }, { "index": 528, "num_nts": 6, "nts_short": "UAGGGG", "nts_long": "///A/498,///A/500,///A/499,///A/505,///A/516,///A/515" }, { "index": 529, "num_nts": 6, "nts_short": "CAAAAC", "nts_long": "///A/502,///A/519,///A/518,///A/517,///A/507,///A/508" }, { "index": 530, "num_nts": 6, "nts_short": "AGUACU", "nts_long": "///A/513,///A/512,///A/511,///A/835,///A/734,///A/735" }, { "index": 531, "num_nts": 6, "nts_short": "GUGGGU", "nts_long": "///A/749,///A/750,///A/751,///A/773,///A/772,///A/771" }, { "index": 532, "num_nts": 6, "nts_short": "GAAAGC", "nts_long": "///A/754,///A/753,///A/752,///A/774,///A/775,///A/777" }, { "index": 533, "num_nts": 6, "nts_short": "CGGGAG", "nts_long": "///A/864,///A/865,///A/1228,///A/1227,///A/1020,///A/1035" }, { "index": 534, "num_nts": 6, "nts_short": "GAAAAG", "nts_long": "///A/992,///A/868,///A/867,///A/866,///A/1230,///A/1231" }, { "index": 535, "num_nts": 6, "nts_short": "UGAAAG", "nts_long": "///A/1513,///A/1594,///A/1593,///A/1592,///A/1575,///A/1576" }, { "index": 536, "num_nts": 6, "nts_short": "UAAAAG", "nts_long": "///A/1584,///A/1581,///A/1580,///A/1579,///A/1588,///A/1589" }, { "index": 537, "num_nts": 6, "nts_short": "AAAAGC", "nts_long": "///A/1617,///A/1618,///A/1619,///A/1620,///A/1621,///A/1622" }, { "index": 538, "num_nts": 6, "nts_short": "CUCAAA", "nts_long": "///A/1739,///A/1737,///A/1736,///A/1735,///A/1734,///A/1745" }, { "index": 539, "num_nts": 6, "nts_short": "GGCCCA", "nts_long": "///A/1879,///A/1878,///A/1923,///A/1922,///A/1924,///A/1925" }, { "index": 540, "num_nts": 6, "nts_short": "CGAAAU", "nts_long": "///A/1890,///A/1889,///A/1888,///A/1913,///A/1914,///A/1915" }, { "index": 541, "num_nts": 6, "nts_short": "CGGCUC", "nts_long": "///A/2536,///A/2537,///A/2538,///A/2539,///A/2540,///A/2541" }, { "index": 542, "num_nts": 6, "nts_short": "GAAAGC", "nts_long": "///A/2771,///A/2770,///A/2769,///A/2793,///A/2795,///A/2796" }, { "index": 543, "num_nts": 6, "nts_short": "CUGUAC", "nts_long": "///A/2774,///A/2775,///A/2776,///A/2783,///A/2782,///A/2781" }, { "index": 544, "num_nts": 6, "nts_short": "AAAAAG", "nts_long": "///A/2779,///A/2778,///A/2777,///A/2786,///A/2787,///A/2788" }, { "index": 545, "num_nts": 6, "nts_short": "UGAAAG", "nts_long": "///A/2820,///A/2917,///A/2916,///A/2834,///A/2835,///A/2836" }, { "index": 546, "num_nts": 6, "nts_short": "UCACAC", "nts_long": "///B/23,///B/24,///B/25,///B/26,///B/27,///B/28" }, { "index": 547, "num_nts": 7, "nts_short": "AAAAAGA", "nts_long": "///A/373,///A/524,///A/525,///A/527,///A/526,///A/528,///A/553" }, { "index": 548, "num_nts": 7, "nts_short": "CAAAAGC", "nts_long": "///A/725,///A/724,///A/723,///A/722,///A/851,///A/852,///A/853" }, { "index": 549, "num_nts": 7, "nts_short": "CGAGAAA", "nts_long": "///A/912,///A/911,///A/910,///A/909,///A/908,///A/964,///A/965" }, { "index": 550, "num_nts": 7, "nts_short": "GGACUGC", "nts_long": "///A/1088,///A/1160,///A/1161,///A/1162,///A/1163,///A/1085,///A/1164" }, { "index": 551, "num_nts": 7, "nts_short": "GAAAAUU", "nts_long": "///A/1309,///A/1308,///A/2042,///A/2043,///A/2044,///A/2045,///A/2046" }, { "index": 552, "num_nts": 7, "nts_short": "CGUAGGG", "nts_long": "///A/1731,///A/1732,///A/1733,///A/1743,///A/1742,///A/1741,///A/1740" }, { "index": 553, "num_nts": 7, "nts_short": "CAACGCC", "nts_long": "///A/1803,///A/1802,///A/1858,///A/1859,///A/1860,///A/1861,///A/1862" }, { "index": 554, "num_nts": 7, "nts_short": "UUAACUA", "nts_long": "///A/2069,///A/2070,///A/2071,///A/574,///A/573,///A/2808,///A/2810" }, { "index": 555, "num_nts": 8, "nts_short": "GUGGGUGC", "nts_long": "///A/24,///A/25,///A/26,///A/27,///A/558,///A/557,///A/30,///A/31" }, { "index": 556, "num_nts": 8, "nts_short": "AGUCAAAC", "nts_long": "///A/198,///A/197,///A/196,///A/195,///A/194,///A/193,///A/210,///A/211" }, { "index": 557, "num_nts": 8, "nts_short": "CUAGGAAG", "nts_long": "///A/464,///A/463,///A/462,///A/2438,///A/2439,///A/2440,///A/2441,///A/2442" }, { "index": 558, "num_nts": 8, "nts_short": "UGAGAAAC", "nts_long": "///A/474,///A/223,///A/222,///A/221,///A/220,///A/219,///A/479,///A/480" }, { "index": 559, "num_nts": 8, "nts_short": "UGAUAUGA", "nts_long": "///A/613,///A/614,///A/2059,///A/615,///A/619,///A/620,///A/621,///A/622" }, { "index": 560, "num_nts": 8, "nts_short": "GAGGAAUG", "nts_long": "///A/905,///A/904,///A/903,///A/902,///A/970,///A/971,///A/972,///A/973" }, { "index": 561, "num_nts": 8, "nts_short": "GUAAAACH", "nts_long": "///A/1726,///A/1725,///A/1724,///A/1723,///A/1722,///A/1721,///A/1720,///D/135" }, { "index": 562, "num_nts": 8, "nts_short": "GUAAGAAC", "nts_long": "///A/2126,///A/2125,///A/2124,///A/2123,///A/2122,///A/2254,///A/2228,///A/2229" }, { "index": 563, "num_nts": 8, "nts_short": "UGAAGAGU", "nts_long": "///B/78,///B/77,///B/76,///B/97,///B/98,///B/99,///B/100,///B/101" }, { "index": 564, "num_nts": 9, "nts_short": "CGAAAAAGG", "nts_long": "///A/115,///A/116,///A/118,///A/117,///A/49,///A/179,///A/178,///A/177,///A/175" }, { "index": 565, "num_nts": 9, "nts_short": "GAAGAGUAC", "nts_long": "///A/539,///A/538,///A/537,///A/536,///A/1323,///A/1324,///A/1368,///A/1325,///A/1328" }, { "index": 566, "num_nts": 10, "nts_short": "UUUCCGAUAU", "nts_long": "///A/612,///A/611,///A/610,///A/609,///A/608,///A/607,///A/2047,///A/2048,///A/2049,///A/2051" }, { "index": 567, "num_nts": 10, "nts_short": "CAAGCAGUGA", "nts_long": "///A/1515,///A/1516,///A/1517,///A/1518,///A/1519,///A/1520,///A/1521,///A/1522,///A/1561,///A/1524" }, { "index": 568, "num_nts": 11, "nts_short": "GAAAGAAAAGC", "nts_long": "///A/356,///A/354,///A/374,///A/353,///A/352,///A/547,///A/548,///A/551,///A/549,///A/552,///A/529" }, { "index": 569, "num_nts": 12, "nts_short": "GCGUGUGGUAAG", "nts_long": "///B/80,///B/79,///B/94,///B/95,///B/96,///B/75,///B/74,///B/73,///B/72,///B/71,///B/102,///B/103" } ], "nonStack": { "num_nts": 243, "nts_short": "UGUUCACUCAAUUUUCUAUCGUCUUUGUGUAAUGCGUUGUCAUUUGUCACAAUGCCUUAUUUACAUAUCUCUUUUAGAUUCUCAUUCUUAUAACUUCUUUAACUCCAAUCUAUGUAAGUGCCUAACAACCUACGAUAGCCCGGGUUAUACGCUUGUUAAAUAACGGAUUCGCGUUCCAUGCAACGGGCUUGAUCUCCUGUAAAUUGAUCCCCCUCCGUUCUCAUUGCGACUAUAUACCAUUgg", "nts_long": "///A/34,///A/63,///A/72,///A/100,///A/114,///A/124,///A/127,///A/164,///A/187,///A/199,///A/200,///A/203,///A/232,///A/299,///A/301,///A/315,///A/321,///A/345,///A/365,///A/375,///A/433,///A/440,///A/452,///A/478,///A/481,///A/495,///A/550,///A/554,///A/576,///A/606,///A/630,///A/659,///A/691,///A/701,///A/712,///A/721,///A/733,///A/793,///A/823,///A/837,///A/838,///A/840,///A/869,///A/873,///A/874,///A/877,///A/892,///A/945,///A/958,///A/990,///A/991,///A/1003,///A/1004,///A/1007,///A/1011,///A/1031,///A/1058,///A/1065,///A/1074,///A/1079,///A/1086,///A/1087,///A/1092,///A/1098,///A/1173,///A/1176,///A/1179,///A/1218,///A/1219,///A/1240,///A/1241,///A/1251,///A/1271,///A/1282,///A/1283,///A/1294,///A/1311,///A/1314,///A/1341,///A/1352,///A/1353,///A/1380,///A/1389,///A/1423,///A/1430,///A/1435,///A/1450,///A/1459,///A/1466,///A/1499,///A/1500,///A/1506,///A/1536,///A/1539,///A/1543,///A/1549,///A/1550,///A/1565,///A/1570,///A/1582,///A/1583,///A/1585,///A/1597,///A/1602,///A/1607,///A/1643,///A/1655,///A/1659,///A/1692,///A/1703,///A/1708,///A/1714,///A/1758,///A/1787,///A/1808,///A/1809,///A/1815,///A/1830,///A/1863,///A/1864,///A/1866,///A/1867,///A/1881,///A/1928,///A/1929,///A/2005,///A/2010,///A/2060,///A/2084,///A/2095,///A/2097,///A/2141,///A/2142,///A/2145,///A/2146,///A/2147,///A/2155,///A/2161,///A/2167,///A/2174,///A/2175,///A/2183,///A/2186,///A/2194,///A/2196,///A/2201,///A/2202,///A/2224,///A/2227,///A/2230,///A/2232,///A/2233,///A/2240,///A/2242,///A/2267,///A/2291,///A/2294,///A/2295,///A/2296,///A/2297,///A/2301,///A/2302,///A/2303,///A/2304,///A/2305,///A/2311,///A/2315,///A/2341,///A/2345,///A/2346,///A/2347,///A/2348,///A/2350,///A/2353,///A/2355,///A/2361,///A/2363,///A/2365,///A/2386,///A/2394,///A/2403,///A/2405,///A/2406,///A/2410,///A/2411,///A/2412,///A/2413,///A/2414,///A/2415,///A/2416,///A/2418,///A/2421,///A/2422,///A/2423,///A/2431,///A/2435,///A/2451,///A/2452,///A/2457,///A/2460,///A/2461,///A/2462,///A/2468,///A/2491,///A/2522,///A/2558,///A/2631,///A/2638,///A/2639,///A/2640,///A/2641,///A/2675,///A/2710,///A/2741,///A/2784,///A/2800,///A/2809,///A/2814,///A/2815,///A/2816,///A/2821,///A/2822,///A/2845,///A/2858,///A/2861,///A/2874,///A/2886,///A/2897,///A/2898,///A/2899,///B/3,///B/11,///B/12,///B/37,///B/38,///B/39,///B/40,///B/41,///B/46,///B/85,///B/86,///W/501,///W/502" }, "num_atom2bases": 208, "atom2bases": [ { "index": 1, "type": "sugar", "atom": "///A/218/O2'", "nt": "///A/45", "vert_dist": 3.066 }, { "index": 2, "type": "sugar", "atom": "///A/59/O4'", "nt": "///A/73", "vert_dist": 3.114 }, { "index": 3, "type": "sugar", "atom": "///A/90/O4'", "nt": "///A/91", "vert_dist": 2.841 }, { "index": 4, "type": "sugar", "atom": "///A/56/O4'", "nt": "///A/126", "vert_dist": 3.345 }, { "index": 5, "type": "phosphate", "atom": "///A/140/OP2", "nt": "///A/138", "vert_dist": 2.877 }, { "index": 6, "type": "sugar", "atom": "///A/119/O4'", "nt": "///A/150", "vert_dist": 3.330 }, { "index": 7, "type": "phosphate", "atom": "///A/167/OP2", "nt": "///A/160", "vert_dist": 2.678 }, { "index": 8, "type": "phosphate", "atom": "///A/200/O3'", "nt": "///A/198", "vert_dist": 3.034 }, { "index": 9, "type": "other", "atom": "///A/201/P", "nt": "///A/198", "vert_dist": 3.348 }, { "index": 10, "type": "phosphate", "atom": "///A/201/OP1", "nt": "///A/198", "vert_dist": 2.731 }, { "index": 11, "type": "sugar", "atom": "///A/202/O2'", "nt": "///A/204", "vert_dist": 2.746 }, { "index": 12, "type": "sugar", "atom": "///A/455/O4'", "nt": "///A/226", "vert_dist": 3.359 }, { "index": 13, "type": "sugar", "atom": "///A/2436/O4'", "nt": "///A/230", "vert_dist": 3.118 }, { "index": 14, "type": "phosphate", "atom": "///A/231/OP1", "nt": "///A/231", "vert_dist": 2.700 }, { "index": 15, "type": "sugar", "atom": "///A/233/O4'", "nt": "///A/231", "vert_dist": 3.011 }, { "index": 16, "type": "other", "atom": "///A/286/P", "nt": "///A/284", "vert_dist": 3.468 }, { "index": 17, "type": "phosphate", "atom": "///A/286/OP1", "nt": "///A/284", "vert_dist": 2.970 }, { "index": 18, "type": "sugar", "atom": "///A/287/O4'", "nt": "///A/286", "vert_dist": 3.365 }, { "index": 19, "type": "sugar", "atom": "///A/288/O4'", "nt": "///A/287", "vert_dist": 3.008 }, { "index": 20, "type": "sugar", "atom": "///A/323/O4'", "nt": "///A/322", "vert_dist": 3.443 }, { "index": 21, "type": "sugar", "atom": "///A/378/O4'", "nt": "///A/343", "vert_dist": 3.318 }, { "index": 22, "type": "phosphate", "atom": "///A/353/OP2", "nt": "///A/351", "vert_dist": 2.916 }, { "index": 23, "type": "sugar", "atom": "///A/374/O2'", "nt": "///A/355", "vert_dist": 3.346 }, { "index": 24, "type": "sugar", "atom": "///A/353/O2'", "nt": "///A/373", "vert_dist": 3.196 }, { "index": 25, "type": "sugar", "atom": "///A/355/O4'", "nt": "///A/376", "vert_dist": 3.313 }, { "index": 26, "type": "sugar", "atom": "///A/411/O4'", "nt": "///A/410", "vert_dist": 2.878 }, { "index": 27, "type": "sugar", "atom": "///A/434/O4'", "nt": "///A/435", "vert_dist": 2.861 }, { "index": 28, "type": "sugar", "atom": "///A/500/O4'", "nt": "///A/504", "vert_dist": 3.486 }, { "index": 29, "type": "other", "atom": "///U/37/NZ", "nt": "///A/505", "vert_dist": 2.935 }, { "index": 30, "type": "phosphate", "atom": "///A/512/OP2", "nt": "///A/510", "vert_dist": 2.990 }, { "index": 31, "type": "phosphate", "atom": "///A/525/OP2", "nt": "///A/523", "vert_dist": 3.028 }, { "index": 32, "type": "sugar", "atom": "///A/528/O4'", "nt": "///A/526", "vert_dist": 2.783 }, { "index": 33, "type": "sugar", "atom": "///A/531/O4'", "nt": "///A/530", "vert_dist": 3.064 }, { "index": 34, "type": "phosphate", "atom": "///A/537/OP2", "nt": "///A/535", "vert_dist": 2.802 }, { "index": 35, "type": "phosphate", "atom": "///A/548/OP2", "nt": "///A/546", "vert_dist": 3.004 }, { "index": 36, "type": "sugar", "atom": "///A/553/O4'", "nt": "///A/555", "vert_dist": 3.138 }, { "index": 37, "type": "sugar", "atom": "///A/2808/O2'", "nt": "///A/573", "vert_dist": 3.138 }, { "index": 38, "type": "sugar", "atom": "///A/2050/O2'", "nt": "///A/576", "vert_dist": 3.406 }, { "index": 39, "type": "sugar", "atom": "///A/2065/O4'", "nt": "///A/606", "vert_dist": 3.172 }, { "index": 40, "type": "phosphate", "atom": "///A/614/OP2", "nt": "///A/612", "vert_dist": 3.087 }, { "index": 41, "type": "sugar", "atom": "///A/718/O4'", "nt": "///A/631", "vert_dist": 2.967 }, { "index": 42, "type": "sugar", "atom": "///A/668/O4'", "nt": "///A/667", "vert_dist": 3.137 }, { "index": 43, "type": "phosphate", "atom": "///A/678/OP2", "nt": "///A/676", "vert_dist": 3.177 }, { "index": 44, "type": "phosphate", "atom": "///A/716/OP1", "nt": "///A/716", "vert_dist": 3.206 }, { "index": 45, "type": "sugar", "atom": "///A/763/O4'", "nt": "///A/762", "vert_dist": 3.015 }, { "index": 46, "type": "sugar", "atom": "///A/783/O4'", "nt": "///A/782", "vert_dist": 3.134 }, { "index": 47, "type": "sugar", "atom": "///A/809/O4'", "nt": "///A/810", "vert_dist": 3.128 }, { "index": 48, "type": "sugar", "atom": "///A/1806/O4'", "nt": "///A/828", "vert_dist": 3.361 }, { "index": 49, "type": "sugar", "atom": "///A/839/O4'", "nt": "///A/840", "vert_dist": 2.871 }, { "index": 50, "type": "sugar", "atom": "///A/849/O4'", "nt": "///A/847", "vert_dist": 3.307 }, { "index": 51, "type": "phosphate", "atom": "///A/873/OP2", "nt": "///A/873", "vert_dist": 2.849 }, { "index": 52, "type": "sugar", "atom": "///A/893/O4'", "nt": "///A/894", "vert_dist": 3.411 }, { "index": 53, "type": "sugar", "atom": "///A/900/O2'", "nt": "///A/901", "vert_dist": 2.899 }, { "index": 54, "type": "sugar", "atom": "///A/912/O4'", "nt": "///A/913", "vert_dist": 3.418 }, { "index": 55, "type": "sugar", "atom": "///A/918/O4'", "nt": "///A/917", "vert_dist": 3.329 }, { "index": 56, "type": "sugar", "atom": "///A/918/O2'", "nt": "///A/917", "vert_dist": 3.386 }, { "index": 57, "type": "phosphate", "atom": "///A/2294/O3'", "nt": "///A/957", "vert_dist": 3.176 }, { "index": 58, "type": "phosphate", "atom": "///A/958/OP2", "nt": "///A/958", "vert_dist": 2.878 }, { "index": 59, "type": "phosphate", "atom": "///A/1003/OP1", "nt": "///A/1003", "vert_dist": 2.780 }, { "index": 60, "type": "sugar", "atom": "///A/1050/O4'", "nt": "///A/1056", "vert_dist": 3.069 }, { "index": 61, "type": "sugar", "atom": "///A/1051/O4'", "nt": "///A/1058", "vert_dist": 3.401 }, { "index": 62, "type": "sugar", "atom": "///A/1066/O4'", "nt": "///A/1067", "vert_dist": 2.922 }, { "index": 63, "type": "sugar", "atom": "///A/1181/O4'", "nt": "///A/1071", "vert_dist": 3.101 }, { "index": 64, "type": "sugar", "atom": "///A/1084/O2'", "nt": "///A/1085", "vert_dist": 3.403 }, { "index": 65, "type": "sugar", "atom": "///A/1091/O4'", "nt": "///A/1093", "vert_dist": 2.753 }, { "index": 66, "type": "phosphate", "atom": "///A/1155/OP2", "nt": "///A/1155", "vert_dist": 2.984 }, { "index": 67, "type": "sugar", "atom": "///A/1174/O2'", "nt": "///A/1175", "vert_dist": 2.744 }, { "index": 68, "type": "phosphate", "atom": "///A/2055/OP1", "nt": "///A/1176", "vert_dist": 3.328 }, { "index": 69, "type": "sugar", "atom": "///A/1217/O4'", "nt": "///A/1216", "vert_dist": 3.232 }, { "index": 70, "type": "sugar", "atom": "///A/1217/O2'", "nt": "///A/1220", "vert_dist": 2.719 }, { "index": 71, "type": "sugar", "atom": "///A/1019/O4'", "nt": "///A/1229", "vert_dist": 2.963 }, { "index": 72, "type": "sugar", "atom": "///A/590/O4'", "nt": "///A/1260", "vert_dist": 2.791 }, { "index": 73, "type": "sugar", "atom": "///A/596/O4'", "nt": "///A/1260", "vert_dist": 3.484 }, { "index": 74, "type": "phosphate", "atom": "///A/1265/OP2", "nt": "///A/1263", "vert_dist": 2.874 }, { "index": 75, "type": "sugar", "atom": "///A/1292/O2'", "nt": "///A/1293", "vert_dist": 2.846 }, { "index": 76, "type": "phosphate", "atom": "///A/1324/OP2", "nt": "///A/1322", "vert_dist": 2.936 }, { "index": 77, "type": "sugar", "atom": "///A/1679/O4'", "nt": "///A/1339", "vert_dist": 2.981 }, { "index": 78, "type": "sugar", "atom": "///A/1351/O4'", "nt": "///A/1352", "vert_dist": 3.394 }, { "index": 79, "type": "sugar", "atom": "///A/1400/O4'", "nt": "///A/1399", "vert_dist": 3.406 }, { "index": 80, "type": "phosphate", "atom": "///A/1405/OP2", "nt": "///A/1403", "vert_dist": 3.245 }, { "index": 81, "type": "sugar", "atom": "///A/1383/O4'", "nt": "///A/1423", "vert_dist": 3.381 }, { "index": 82, "type": "phosphate", "atom": "///A/1432/OP1", "nt": "///A/1430", "vert_dist": 3.240 }, { "index": 83, "type": "sugar", "atom": "///A/1473/O4'", "nt": "///A/1474", "vert_dist": 2.851 }, { "index": 84, "type": "sugar", "atom": "///A/1486/O4'", "nt": "///A/1485", "vert_dist": 3.450 }, { "index": 85, "type": "phosphate", "atom": "///A/1499/OP2", "nt": "///A/1499", "vert_dist": 2.944 }, { "index": 86, "type": "sugar", "atom": "///A/1504/O4'", "nt": "///A/1505", "vert_dist": 2.834 }, { "index": 87, "type": "sugar", "atom": "///A/1569/O4'", "nt": "///A/1571", "vert_dist": 2.946 }, { "index": 88, "type": "phosphate", "atom": "///A/1580/O5'", "nt": "///A/1581", "vert_dist": 3.086 }, { "index": 89, "type": "sugar", "atom": "///A/1586/O2'", "nt": "///A/1585", "vert_dist": 3.010 }, { "index": 90, "type": "phosphate", "atom": "///A/1585/OP2", "nt": "///A/1586", "vert_dist": 2.686 }, { "index": 91, "type": "sugar", "atom": "///A/1589/O4'", "nt": "///A/1588", "vert_dist": 3.174 }, { "index": 92, "type": "sugar", "atom": "///A/1651/O2'", "nt": "///A/1653", "vert_dist": 2.616 }, { "index": 93, "type": "phosphate", "atom": "///A/1678/OP2", "nt": "///A/1676", "vert_dist": 2.887 }, { "index": 94, "type": "other", "atom": "///J/5/NZ", "nt": "///A/1698", "vert_dist": 2.940 }, { "index": 95, "type": "phosphate", "atom": "///A/1718/OP2", "nt": "///A/1716", "vert_dist": 2.920 }, { "index": 96, "type": "sugar", "atom": "///A/1739/O4'", "nt": "///A/1740", "vert_dist": 2.936 }, { "index": 97, "type": "sugar", "atom": "///A/1746/O4'", "nt": "///A/1745", "vert_dist": 3.337 }, { "index": 98, "type": "sugar", "atom": "///A/1759/O4'", "nt": "///A/1757", "vert_dist": 3.266 }, { "index": 99, "type": "phosphate", "atom": "///A/1784/OP2", "nt": "///A/1782", "vert_dist": 3.122 }, { "index": 100, "type": "sugar", "atom": "///A/2724/O2'", "nt": "///A/1787", "vert_dist": 3.347 }, { "index": 101, "type": "sugar", "atom": "///A/1803/O4'", "nt": "///A/1802", "vert_dist": 3.446 }, { "index": 102, "type": "sugar", "atom": "///A/1805/O4'", "nt": "///A/1804", "vert_dist": 3.478 }, { "index": 103, "type": "sugar", "atom": "///A/1848/O4'", "nt": "///A/1850", "vert_dist": 3.032 }, { "index": 104, "type": "phosphate", "atom": "///A/1866/OP1", "nt": "///A/1868", "vert_dist": 2.906 }, { "index": 105, "type": "sugar", "atom": "///A/1874/O2'", "nt": "///A/1875", "vert_dist": 3.251 }, { "index": 106, "type": "sugar", "atom": "///A/1884/O4'", "nt": "///A/1883", "vert_dist": 3.097 }, { "index": 107, "type": "sugar", "atom": "///A/1913/O4'", "nt": "///A/1888", "vert_dist": 2.679 }, { "index": 108, "type": "sugar", "atom": "///A/1922/O4'", "nt": "///A/1923", "vert_dist": 2.763 }, { "index": 109, "type": "sugar", "atom": "///A/1927/O4'", "nt": "///A/1926", "vert_dist": 3.430 }, { "index": 110, "type": "phosphate", "atom": "///A/1867/O5'", "nt": "///A/1928", "vert_dist": 3.404 }, { "index": 111, "type": "sugar", "atom": "///A/623/O4'", "nt": "///A/2046", "vert_dist": 3.217 }, { "index": 112, "type": "other", "atom": "///A/619/P", "nt": "///A/2060", "vert_dist": 3.312 }, { "index": 113, "type": "phosphate", "atom": "///A/619/OP2", "nt": "///A/2060", "vert_dist": 2.813 }, { "index": 114, "type": "sugar", "atom": "///A/2096/O2'", "nt": "///A/2098", "vert_dist": 2.881 }, { "index": 115, "type": "phosphate", "atom": "///A/2140/O3'", "nt": "///A/2141", "vert_dist": 3.185 }, { "index": 116, "type": "other", "atom": "///A/2146/P", "nt": "///A/2144", "vert_dist": 3.426 }, { "index": 117, "type": "phosphate", "atom": "///A/2146/OP1", "nt": "///A/2144", "vert_dist": 2.810 }, { "index": 118, "type": "phosphate", "atom": "///A/2146/OP2", "nt": "///A/2144", "vert_dist": 2.923 }, { "index": 119, "type": "sugar", "atom": "///A/2146/O2'", "nt": "///A/2147", "vert_dist": 3.006 }, { "index": 120, "type": "sugar", "atom": "///A/2140/O4'", "nt": "///A/2148", "vert_dist": 3.050 }, { "index": 121, "type": "phosphate", "atom": "///A/2151/OP1", "nt": "///A/2151", "vert_dist": 2.872 }, { "index": 122, "type": "phosphate", "atom": "///A/2152/OP1", "nt": "///A/2152", "vert_dist": 3.493 }, { "index": 123, "type": "phosphate", "atom": "///A/2194/OP1", "nt": "///A/2153", "vert_dist": 2.845 }, { "index": 124, "type": "phosphate", "atom": "///A/2201/OP1", "nt": "///A/2153", "vert_dist": 2.843 }, { "index": 125, "type": "sugar", "atom": "///A/2193/O2'", "nt": "///A/2154", "vert_dist": 2.607 }, { "index": 126, "type": "phosphate", "atom": "///A/2154/O5'", "nt": "///A/2155", "vert_dist": 3.031 }, { "index": 127, "type": "sugar", "atom": "///A/2159/O2'", "nt": "///A/2160", "vert_dist": 2.830 }, { "index": 128, "type": "sugar", "atom": "///A/2182/O4'", "nt": "///A/2161", "vert_dist": 3.001 }, { "index": 129, "type": "sugar", "atom": "///A/2166/O4'", "nt": "///A/2165", "vert_dist": 3.161 }, { "index": 130, "type": "sugar", "atom": "///A/2172/O4'", "nt": "///A/2171", "vert_dist": 3.219 }, { "index": 131, "type": "sugar", "atom": "///A/2175/O4'", "nt": "///A/2173", "vert_dist": 3.484 }, { "index": 132, "type": "sugar", "atom": "///A/2173/O2'", "nt": "///A/2176", "vert_dist": 2.819 }, { "index": 133, "type": "sugar", "atom": "///A/2177/O4'", "nt": "///A/2176", "vert_dist": 3.297 }, { "index": 134, "type": "sugar", "atom": "///A/2161/O4'", "nt": "///A/2183", "vert_dist": 3.330 }, { "index": 135, "type": "phosphate", "atom": "///A/2183/OP1", "nt": "///A/2183", "vert_dist": 3.057 }, { "index": 136, "type": "sugar", "atom": "///A/2186/O4'", "nt": "///A/2185", "vert_dist": 3.380 }, { "index": 137, "type": "sugar", "atom": "///A/2158/O2'", "nt": "///A/2187", "vert_dist": 3.177 }, { "index": 138, "type": "phosphate", "atom": "///A/2187/OP2", "nt": "///A/2187", "vert_dist": 2.817 }, { "index": 139, "type": "phosphate", "atom": "///A/2194/OP2", "nt": "///A/2194", "vert_dist": 2.794 }, { "index": 140, "type": "sugar", "atom": "///A/2194/O2'", "nt": "///A/2195", "vert_dist": 3.390 }, { "index": 141, "type": "sugar", "atom": "///A/2200/O2'", "nt": "///A/2201", "vert_dist": 3.481 }, { "index": 142, "type": "phosphate", "atom": "///A/2155/OP1", "nt": "///A/2202", "vert_dist": 2.700 }, { "index": 143, "type": "sugar", "atom": "///A/1830/O4'", "nt": "///A/2232", "vert_dist": 2.980 }, { "index": 144, "type": "sugar", "atom": "///A/2253/O4'", "nt": "///A/2252", "vert_dist": 3.350 }, { "index": 145, "type": "other", "atom": "///A/2254/P", "nt": "///A/2255", "vert_dist": 3.498 }, { "index": 146, "type": "phosphate", "atom": "///A/2254/OP1", "nt": "///A/2255", "vert_dist": 2.793 }, { "index": 147, "type": "sugar", "atom": "///A/2266/O2'", "nt": "///A/2268", "vert_dist": 2.878 }, { "index": 148, "type": "phosphate", "atom": "///A/2311/OP1", "nt": "///A/2289", "vert_dist": 2.850 }, { "index": 149, "type": "sugar", "atom": "///A/2295/O2'", "nt": "///A/2294", "vert_dist": 2.889 }, { "index": 150, "type": "sugar", "atom": "///A/2298/O2'", "nt": "///A/2299", "vert_dist": 2.789 }, { "index": 151, "type": "sugar", "atom": "///A/2310/O4'", "nt": "///A/2309", "vert_dist": 2.870 }, { "index": 152, "type": "sugar", "atom": "///A/2316/O4'", "nt": "///A/2318", "vert_dist": 3.250 }, { "index": 153, "type": "sugar", "atom": "///A/2329/O4'", "nt": "///A/2328", "vert_dist": 3.314 }, { "index": 154, "type": "sugar", "atom": "///A/2331/O4'", "nt": "///A/2330", "vert_dist": 3.012 }, { "index": 155, "type": "sugar", "atom": "///A/2345/O2'", "nt": "///A/2346", "vert_dist": 2.830 }, { "index": 156, "type": "sugar", "atom": "///A/2327/O2'", "nt": "///A/2350", "vert_dist": 2.633 }, { "index": 157, "type": "phosphate", "atom": "///A/2349/O3'", "nt": "///A/2351", "vert_dist": 3.295 }, { "index": 158, "type": "phosphate", "atom": "///A/2354/OP1", "nt": "///A/2354", "vert_dist": 2.856 }, { "index": 159, "type": "phosphate", "atom": "///A/2354/OP2", "nt": "///A/2354", "vert_dist": 2.752 }, { "index": 160, "type": "sugar", "atom": "///A/2358/O4'", "nt": "///A/2359", "vert_dist": 2.893 }, { "index": 161, "type": "phosphate", "atom": "///A/2363/OP1", "nt": "///A/2363", "vert_dist": 2.853 }, { "index": 162, "type": "other", "atom": "///A/2365/P", "nt": "///A/2365", "vert_dist": 3.457 }, { "index": 163, "type": "phosphate", "atom": "///A/2365/OP1", "nt": "///A/2365", "vert_dist": 3.092 }, { "index": 164, "type": "phosphate", "atom": "///A/2318/O5'", "nt": "///A/2372", "vert_dist": 2.778 }, { "index": 165, "type": "sugar", "atom": "///A/2373/O4'", "nt": "///A/2375", "vert_dist": 3.076 }, { "index": 166, "type": "sugar", "atom": "///A/2411/O2'", "nt": "///A/2375", "vert_dist": 3.329 }, { "index": 167, "type": "sugar", "atom": "///A/2386/O4'", "nt": "///A/2385", "vert_dist": 3.074 }, { "index": 168, "type": "phosphate", "atom": "///A/2394/OP2", "nt": "///A/2394", "vert_dist": 3.416 }, { "index": 169, "type": "sugar", "atom": "///A/2401/O2'", "nt": "///A/2402", "vert_dist": 2.945 }, { "index": 170, "type": "sugar", "atom": "///A/2405/O2'", "nt": "///A/2406", "vert_dist": 2.943 }, { "index": 171, "type": "phosphate", "atom": "///A/2417/OP2", "nt": "///A/2417", "vert_dist": 3.151 }, { "index": 172, "type": "phosphate", "atom": "///A/2425/O3'", "nt": "///A/2426", "vert_dist": 3.455 }, { "index": 173, "type": "sugar", "atom": "///A/2427/O2'", "nt": "///A/2428", "vert_dist": 2.543 }, { "index": 174, "type": "sugar", "atom": "///A/2428/O2'", "nt": "///A/2429", "vert_dist": 2.578 }, { "index": 175, "type": "phosphate", "atom": "///A/2445/OP1", "nt": "///A/2445", "vert_dist": 2.792 }, { "index": 176, "type": "sugar", "atom": "///A/2445/O2'", "nt": "///A/2446", "vert_dist": 2.719 }, { "index": 177, "type": "sugar", "atom": "///A/2446/O2'", "nt": "///A/2447", "vert_dist": 2.681 }, { "index": 178, "type": "sugar", "atom": "///A/2449/O2'", "nt": "///A/2450", "vert_dist": 2.780 }, { "index": 179, "type": "phosphate", "atom": "///A/2454/O3'", "nt": "///A/2452", "vert_dist": 2.943 }, { "index": 180, "type": "phosphate", "atom": "///A/872/O3'", "nt": "///A/2457", "vert_dist": 3.024 }, { "index": 181, "type": "sugar", "atom": "///A/2453/O2'", "nt": "///A/2458", "vert_dist": 3.308 }, { "index": 182, "type": "sugar", "atom": "///A/201/O2'", "nt": "///A/2459", "vert_dist": 2.793 }, { "index": 183, "type": "phosphate", "atom": "///A/2462/OP2", "nt": "///A/2462", "vert_dist": 2.824 }, { "index": 184, "type": "phosphate", "atom": "///A/2463/OP2", "nt": "///A/2463", "vert_dist": 3.118 }, { "index": 185, "type": "sugar", "atom": "///A/2688/O4'", "nt": "///A/2560", "vert_dist": 2.728 }, { "index": 186, "type": "phosphate", "atom": "///A/2583/OP2", "nt": "///A/2581", "vert_dist": 3.117 }, { "index": 187, "type": "sugar", "atom": "///A/2583/O4'", "nt": "///A/2582", "vert_dist": 3.240 }, { "index": 188, "type": "sugar", "atom": "///A/2676/O2'", "nt": "///A/2593", "vert_dist": 2.963 }, { "index": 189, "type": "sugar", "atom": "///A/2572/O2'", "nt": "///A/2674", "vert_dist": 3.384 }, { "index": 190, "type": "other", "atom": "///A/2690/P", "nt": "///A/2688", "vert_dist": 3.454 }, { "index": 191, "type": "phosphate", "atom": "///A/2690/OP2", "nt": "///A/2688", "vert_dist": 2.723 }, { "index": 192, "type": "sugar", "atom": "///A/2808/O4'", "nt": "///A/2810", "vert_dist": 3.140 }, { "index": 193, "type": "other", "atom": "///D/197/NZ", "nt": "///A/2845", "vert_dist": 3.152 }, { "index": 194, "type": "sugar", "atom": "///A/2851/O4'", "nt": "///A/2850", "vert_dist": 3.250 }, { "index": 195, "type": "sugar", "atom": "///A/2857/O4'", "nt": "///A/2859", "vert_dist": 3.192 }, { "index": 196, "type": "phosphate", "atom": "///A/2884/OP2", "nt": "///A/2882", "vert_dist": 2.831 }, { "index": 197, "type": "phosphate", "atom": "///A/2885/OP2", "nt": "///A/2886", "vert_dist": 3.446 }, { "index": 198, "type": "sugar", "atom": "///A/2720/O4'", "nt": "///A/2897", "vert_dist": 3.413 }, { "index": 199, "type": "sugar", "atom": "///A/2925/O4'", "nt": "///A/2924", "vert_dist": 3.485 }, { "index": 200, "type": "phosphate", "atom": "///B/11/OP1", "nt": "///B/13", "vert_dist": 3.314 }, { "index": 201, "type": "phosphate", "atom": "///B/11/OP2", "nt": "///B/13", "vert_dist": 3.329 }, { "index": 202, "type": "sugar", "atom": "///B/32/O4'", "nt": "///B/31", "vert_dist": 3.145 }, { "index": 203, "type": "sugar", "atom": "///B/34/O4'", "nt": "///B/33", "vert_dist": 3.420 }, { "index": 204, "type": "sugar", "atom": "///B/32/O2'", "nt": "///B/34", "vert_dist": 2.886 }, { "index": 205, "type": "sugar", "atom": "///B/45/O4'", "nt": "///B/46", "vert_dist": 2.918 }, { "index": 206, "type": "sugar", "atom": "///B/95/O4'", "nt": "///B/94", "vert_dist": 3.446 }, { "index": 207, "type": "sugar", "atom": "///B/13/O4'", "nt": "///B/107", "vert_dist": 2.658 }, { "index": 208, "type": "sugar", "atom": "///B/114/O4'", "nt": "///B/113", "vert_dist": 3.229 } ], "num_hairpins": 62, "hairpins": [ { "index": 1, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ 9 ], "summary": "[1] 8 [A.59 A.68] 3", "num_nts": 10, "nts_short": "GGACGAACAC", "nts_long": "///A/59,///A/60,///A/61,///A/62,///A/63,///A/64,///A/65,///A/66,///A/67,///A/68", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "GACGAACA", "nts_long": "///A/60,///A/61,///A/62,///A/63,///A/64,///A/65,///A/66,///A/67" } ] }, { "index": 2, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ -3 ], "summary": "[1] 6 [A.67 A.74] 1", "num_nts": 8, "nts_short": "ACCGAUAU", "nts_long": "///A/67,///A/68,///A/69,///A/70,///A/71,///A/72,///A/73,///A/74", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "CCGAUA", "nts_long": "///A/68,///A/69,///A/70,///A/71,///A/72,///A/73" } ] }, { "index": 3, "type": "hairpin loop", "bridging_nts": [ 7 ], "stem_indices": [ 12 ], "summary": "[1] 7 [A.87 A.95] 3", "num_nts": 9, "nts_short": "UGUAAGCAA", "nts_long": "///A/87,///A/88,///A/89,///A/90,///A/91,///A/92,///A/93,///A/94,///A/95", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "GUAAGCA", "nts_long": "///A/88,///A/89,///A/90,///A/91,///A/92,///A/93,///A/94" } ] }, { "index": 4, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 13 ], "summary": "[1] 4 [A.122 A.127] 3", "num_nts": 6, "nts_short": "GGAAAC", "nts_long": "///A/122,///A/123,///A/124,///A/125,///A/126,///A/127", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///A/123,///A/124,///A/125,///A/126" } ] }, { "index": 5, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 14 ], "summary": "[1] 6 [A.136 A.143] 7", "num_nts": 8, "nts_short": "CGUAAUGG", "nts_long": "///A/136,///A/137,///A/138,///A/139,///A/140,///A/141,///A/142,///A/143", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GUAAUG", "nts_long": "///A/137,///A/138,///A/139,///A/140,///A/141,///A/142" } ] }, { "index": 6, "type": "hairpin loop", "bridging_nts": [ 11 ], "stem_indices": [ 15 ], "summary": "[1] 11 [A.158 A.170] 6", "num_nts": 13, "nts_short": "CUGAAUUCAUAGG", "nts_long": "///A/158,///A/159,///A/160,///A/161,///A/162,///A/163,///A/164,///A/165,///A/166,///A/167,///A/168,///A/169,///A/170", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 11, "nts_short": "UGAAUUCAUAG", "nts_long": "///A/159,///A/160,///A/161,///A/162,///A/163,///A/164,///A/165,///A/166,///A/167,///A/168,///A/169" } ] }, { "index": 7, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ -6 ], "summary": "[1] 6 [A.197 A.204] 1", "num_nts": 8, "nts_short": "GAAACAUC", "nts_long": "///A/197,///A/198,///A/199,///A/200,///A/201,///A/202,///A/203,///A/204", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "AAACAU", "nts_long": "///A/198,///A/199,///A/200,///A/201,///A/202,///A/203" } ] }, { "index": 8, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 17 ], "summary": "[1] 4 [A.228 A.233] 2", "num_nts": 6, "nts_short": "CAAAUG", "nts_long": "///A/228,///A/229,///A/230,///A/231,///A/232,///A/233", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "AAAU", "nts_long": "///A/229,///A/230,///A/231,///A/232" } ] }, { "index": 9, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 19 ], "summary": "[1] 5 [A.249 A.255] 2", "num_nts": 7, "nts_short": "CGGCGAG", "nts_long": "///A/249,///A/250,///A/251,///A/252,///A/253,///A/254,///A/255", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GGCGA", "nts_long": "///A/250,///A/251,///A/252,///A/253,///A/254" } ] }, { "index": 10, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 22 ], "summary": "[1] 4 [A.283 A.288] 3", "num_nts": 6, "nts_short": "GCUUGC", "nts_long": "///A/283,///A/284,///A/285,///A/286,///A/287,///A/288", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "CUUG", "nts_long": "///A/284,///A/285,///A/286,///A/287" } ] }, { "index": 11, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 29 ], "summary": "[1] 6 [A.349 A.356] 4", "num_nts": 8, "nts_short": "CUGGAAAG", "nts_long": "///A/349,///A/350,///A/351,///A/352,///A/353,///A/354,///A/355,///A/356", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "UGGAAA", "nts_long": "///A/350,///A/351,///A/352,///A/353,///A/354,///A/355" } ] }, { "index": 12, "type": "hairpin loop", "bridging_nts": [ 3 ], "stem_indices": [ -10 ], "summary": "[1] 3 [A.363 A.367] 1", "num_nts": 5, "nts_short": "CAUAG", "nts_long": "///A/363,///A/364,///A/365,///A/366,///A/367", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "AUA", "nts_long": "///A/364,///A/365,///A/366" } ] }, { "index": 13, "type": "hairpin loop", "bridging_nts": [ 7 ], "stem_indices": [ 31 ], "summary": "[1] 7 [A.371 A.379] 3", "num_nts": 9, "nts_short": "GUAACAGCC", "nts_long": "///A/371,///A/372,///A/373,///A/374,///A/375,///A/376,///A/377,///A/378,///A/379", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "UAACAGC", "nts_long": "///A/372,///A/373,///A/374,///A/375,///A/376,///A/377,///A/378" } ] }, { "index": 14, "type": "hairpin loop", "bridging_nts": [ 9 ], "stem_indices": [ 32 ], "summary": "[1] 9 [A.429 A.439] 8", "num_nts": 11, "nts_short": "ACACGUGAAAU", "nts_long": "///A/429,///A/430,///A/431,///A/432,///A/433,///A/434,///A/435,///A/436,///A/437,///A/438,///A/439", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 9, "nts_short": "CACGUGAAA", "nts_long": "///A/430,///A/431,///A/432,///A/433,///A/434,///A/435,///A/436,///A/437,///A/438" } ] }, { "index": 15, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 33 ], "summary": "[1] 6 [A.457 A.464] 5", "num_nts": 8, "nts_short": "GGACCAUC", "nts_long": "///A/457,///A/458,///A/459,///A/460,///A/461,///A/462,///A/463,///A/464", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GACCAU", "nts_long": "///A/458,///A/459,///A/460,///A/461,///A/462,///A/463" } ] }, { "index": 16, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 34 ], "summary": "[1] 4 [A.509 A.514] 2", "num_nts": 6, "nts_short": "CGUGAG", "nts_long": "///A/509,///A/510,///A/511,///A/512,///A/513,///A/514", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GUGA", "nts_long": "///A/510,///A/511,///A/512,///A/513" } ] }, { "index": 17, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 35 ], "summary": "[1] 4 [A.534 A.539] 4", "num_nts": 6, "nts_short": "CGGAAG", "nts_long": "///A/534,///A/535,///A/536,///A/537,///A/538,///A/539", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GGAA", "nts_long": "///A/535,///A/536,///A/537,///A/538" } ] }, { "index": 18, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 37 ], "summary": "[1] 6 [A.588 A.595] 4", "num_nts": 8, "nts_short": "CGUUAACG", "nts_long": "///A/588,///A/589,///A/590,///A/591,///A/592,///A/593,///A/594,///A/595", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GUUAAC", "nts_long": "///A/589,///A/590,///A/591,///A/592,///A/593,///A/594" } ] }, { "index": 19, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ -17 ], "summary": "[1] 8 [A.610 A.619] 1", "num_nts": 10, "nts_short": "UUUUGUAGAA", "nts_long": "///A/610,///A/611,///A/612,///A/613,///A/614,///A/615,///A/616,///A/617,///A/618,///A/619", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "UUUGUAGA", "nts_long": "///A/611,///A/612,///A/613,///A/614,///A/615,///A/616,///A/617,///A/618" } ] }, { "index": 20, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 42 ], "summary": "[1] 5 [A.656 A.662] 3", "num_nts": 7, "nts_short": "AGAAGAU", "nts_long": "///A/656,///A/657,///A/658,///A/659,///A/660,///A/661,///A/662", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GAAGA", "nts_long": "///A/657,///A/658,///A/659,///A/660,///A/661" } ] }, { "index": 21, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 43 ], "summary": "[1] 4 [A.675 A.680] 2", "num_nts": 6, "nts_short": "CGAAAG", "nts_long": "///A/675,///A/676,///A/677,///A/678,///A/679,///A/680", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///A/676,///A/677,///A/678,///A/679" } ] }, { "index": 22, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 44 ], "summary": "[1] 5 [A.687 A.693] 4", "num_nts": 7, "nts_short": "UGAAUAG", "nts_long": "///A/687,///A/688,///A/689,///A/690,///A/691,///A/692,///A/693", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GAAUA", "nts_long": "///A/688,///A/689,///A/690,///A/691,///A/692" } ] }, { "index": 23, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 49 ], "summary": "[1] 6 [A.759 A.766] 6", "num_nts": 8, "nts_short": "GGUAACAC", "nts_long": "///A/759,///A/760,///A/761,///A/762,///A/763,///A/764,///A/765,///A/766", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GUAACA", "nts_long": "///A/760,///A/761,///A/762,///A/763,///A/764,///A/765" } ] }, { "index": 24, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ 51 ], "summary": "[1] 8 [A.791 A.800] 5", "num_nts": 10, "nts_short": "CGUUGAAAAG", "nts_long": "///A/791,///A/792,///A/793,///A/794,///A/795,///A/796,///A/797,///A/798,///A/799,///A/800", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "GUUGAAAA", "nts_long": "///A/792,///A/793,///A/794,///A/795,///A/796,///A/797,///A/798,///A/799" } ] }, { "index": 25, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 52 ], "summary": "[1] 5 [A.826 A.832] 3", "num_nts": 7, "nts_short": "UGAAAUG", "nts_long": "///A/826,///A/827,///A/828,///A/829,///A/830,///A/831,///A/832", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GAAAU", "nts_long": "///A/827,///A/828,///A/829,///A/830,///A/831" } ] }, { "index": 26, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 54 ], "summary": "[1] 6 [A.872 A.879] 4", "num_nts": 8, "nts_short": "CUUUAGGG", "nts_long": "///A/872,///A/873,///A/874,///A/875,///A/876,///A/877,///A/878,///A/879", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "UUUAGG", "nts_long": "///A/873,///A/874,///A/875,///A/876,///A/877,///A/878" } ] }, { "index": 27, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 61 ], "summary": "[1] 6 [A.1001 A.1008] 2", "num_nts": 8, "nts_short": "UGAUAAGA", "nts_long": "///A/1001,///A/1002,///A/1003,///A/1004,///A/1005,///A/1006,///A/1007,///A/1008", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GAUAAG", "nts_long": "///A/1002,///A/1003,///A/1004,///A/1005,///A/1006,///A/1007" } ] }, { "index": 28, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 62 ], "summary": "[1] 6 [A.1024 A.1031] 3", "num_nts": 8, "nts_short": "GAAACAGC", "nts_long": "///A/1024,///A/1025,///A/1026,///A/1027,///A/1028,///A/1029,///A/1030,///A/1031", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "AAACAG", "nts_long": "///A/1025,///A/1026,///A/1027,///A/1028,///A/1029,///A/1030" } ] }, { "index": 29, "type": "hairpin loop", "bridging_nts": [ 3 ], "stem_indices": [ 71 ], "summary": "[1] 3 [A.1216 A.1220] 7", "num_nts": 5, "nts_short": "CUUCG", "nts_long": "///A/1216,///A/1217,///A/1218,///A/1219,///A/1220", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UUC", "nts_long": "///A/1217,///A/1218,///A/1219" } ] }, { "index": 30, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 75 ], "summary": "[1] 4 [A.1262 A.1267] 2", "num_nts": 6, "nts_short": "CGGAAG", "nts_long": "///A/1262,///A/1263,///A/1264,///A/1265,///A/1266,///A/1267", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GGAA", "nts_long": "///A/1263,///A/1264,///A/1265,///A/1266" } ] }, { "index": 31, "type": "hairpin loop", "bridging_nts": [ 7 ], "stem_indices": [ 77 ], "summary": "[1] 7 [A.1320 A.1328] 6", "num_nts": 9, "nts_short": "GUGAGAAUC", "nts_long": "///A/1320,///A/1321,///A/1322,///A/1323,///A/1324,///A/1325,///A/1326,///A/1327,///A/1328", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "UGAGAAU", "nts_long": "///A/1321,///A/1322,///A/1323,///A/1324,///A/1325,///A/1326,///A/1327" } ] }, { "index": 32, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 82 ], "summary": "[1] 5 [A.1363 A.1369] 2", "num_nts": 7, "nts_short": "GCUCGUC", "nts_long": "///A/1363,///A/1364,///A/1365,///A/1366,///A/1367,///A/1368,///A/1369", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "CUCGU", "nts_long": "///A/1364,///A/1365,///A/1366,///A/1367,///A/1368" } ] }, { "index": 33, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 87 ], "summary": "[1] 4 [A.1402 A.1407] 3", "num_nts": 6, "nts_short": "CGAAAG", "nts_long": "///A/1402,///A/1403,///A/1404,///A/1405,///A/1406,///A/1407", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///A/1403,///A/1404,///A/1405,///A/1406" } ] }, { "index": 34, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ 88 ], "summary": "[1] 8 [A.1428 A.1437] 5", "num_nts": 10, "nts_short": "GUUGAUAUUC", "nts_long": "///A/1428,///A/1429,///A/1430,///A/1431,///A/1432,///A/1433,///A/1434,///A/1435,///A/1436,///A/1437", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "UUGAUAUU", "nts_long": "///A/1429,///A/1430,///A/1431,///A/1432,///A/1433,///A/1434,///A/1435,///A/1436" } ] }, { "index": 35, "type": "hairpin loop", "bridging_nts": [ 10 ], "stem_indices": [ -34 ], "summary": "[1] 10 [A.1496 A.1507] 1", "num_nts": 12, "nts_short": "GGUAUUGGAUAU", "nts_long": "///A/1496,///A/1497,///A/1498,///A/1499,///A/1500,///A/1501,///A/1502,///A/1503,///A/1504,///A/1505,///A/1506,///A/1507", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 10, "nts_short": "GUAUUGGAUA", "nts_long": "///A/1497,///A/1498,///A/1499,///A/1500,///A/1501,///A/1502,///A/1503,///A/1504,///A/1505,///A/1506" } ] }, { "index": 36, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 100 ], "summary": "[1] 5 [A.1538 A.1544] 2", "num_nts": 7, "nts_short": "GCAAAUC", "nts_long": "///A/1538,///A/1539,///A/1540,///A/1541,///A/1542,///A/1543,///A/1544", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "CAAAU", "nts_long": "///A/1539,///A/1540,///A/1541,///A/1542,///A/1543" } ] }, { "index": 37, "type": "hairpin loop", "bridging_nts": [ 11 ], "stem_indices": [ 101 ], "summary": "[1] 11 [A.1577 A.1589] 2", "num_nts": 13, "nts_short": "CGAAAUAUAGUAG", "nts_long": "///A/1577,///A/1578,///A/1579,///A/1580,///A/1581,///A/1582,///A/1583,///A/1584,///A/1585,///A/1586,///A/1587,///A/1588,///A/1589", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 11, "nts_short": "GAAAUAUAGUA", "nts_long": "///A/1578,///A/1579,///A/1580,///A/1581,///A/1582,///A/1583,///A/1584,///A/1585,///A/1586,///A/1587,///A/1588" } ] }, { "index": 38, "type": "hairpin loop", "bridging_nts": [ 2 ], "stem_indices": [ -38 ], "summary": "[1] 2 [A.1613 A.1616] 1", "num_nts": 4, "nts_short": "CAAG", "nts_long": "///A/1613,///A/1614,///A/1615,///A/1616", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/1614,///A/1615" } ] }, { "index": 39, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 102 ], "summary": "[1] 6 [A.1657 A.1664] 2", "num_nts": 8, "nts_short": "CGACACAG", "nts_long": "///A/1657,///A/1658,///A/1659,///A/1660,///A/1661,///A/1662,///A/1663,///A/1664", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GACACA", "nts_long": "///A/1658,///A/1659,///A/1660,///A/1661,///A/1662,///A/1663" } ] }, { "index": 40, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 103 ], "summary": "[1] 5 [A.1675 A.1681] 4", "num_nts": 7, "nts_short": "AGAGAAU", "nts_long": "///A/1675,///A/1676,///A/1677,///A/1678,///A/1679,///A/1680,///A/1681", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GAGAA", "nts_long": "///A/1676,///A/1677,///A/1678,///A/1679,///A/1680" } ] }, { "index": 41, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ -41 ], "summary": "[1] 4 [A.1736 A.1741] 1", "num_nts": 6, "nts_short": "CUUCGG", "nts_long": "///A/1736,///A/1737,///A/1738,///A/1739,///A/1740,///A/1741", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "UUCG", "nts_long": "///A/1737,///A/1738,///A/1739,///A/1740" } ] }, { "index": 42, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 109 ], "summary": "[1] 4 [A.1764 A.1769] 4", "num_nts": 6, "nts_short": "UGCAAG", "nts_long": "///A/1764,///A/1765,///A/1766,///A/1767,///A/1768,///A/1769", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GCAA", "nts_long": "///A/1765,///A/1766,///A/1767,///A/1768" } ] }, { "index": 43, "type": "hairpin loop", "bridging_nts": [ 3 ], "stem_indices": [ -43 ], "summary": "[1] 3 [A.1781 A.1785] 1", "num_nts": 5, "nts_short": "CGCAG", "nts_long": "///A/1781,///A/1782,///A/1783,///A/1784,///A/1785", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GCA", "nts_long": "///A/1782,///A/1783,///A/1784" } ] }, { "index": 44, "type": "hairpin loop", "bridging_nts": [ 9 ], "stem_indices": [ 112 ], "summary": "[1] 9 [A.1806 A.1816] 2", "num_nts": 11, "nts_short": "UUUAGCAAAAA", "nts_long": "///A/1806,///A/1807,///A/1808,///A/1809,///A/1810,///A/1811,///A/1812,///A/1813,///A/1814,///A/1815,///A/1816", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 9, "nts_short": "UUAGCAAAA", "nts_long": "///A/1807,///A/1808,///A/1809,///A/1810,///A/1811,///A/1812,///A/1813,///A/1814,///A/1815" } ] }, { "index": 45, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 114 ], "summary": "[1] 4 [A.1835 A.1840] 3", "num_nts": 6, "nts_short": "CGUAAG", "nts_long": "///A/1835,///A/1836,///A/1837,///A/1838,///A/1839,///A/1840", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GUAA", "nts_long": "///A/1836,///A/1837,///A/1838,///A/1839" } ] }, { "index": 46, "type": "hairpin loop", "bridging_nts": [ 13 ], "stem_indices": [ -45 ], "summary": "[1] 13 [A.2049 A.2063] 1", "num_nts": 15, "nts_short": "AGUACCUGUGAAGAU", "nts_long": "///A/2049,///A/2050,///A/2051,///A/2052,///A/2053,///A/2054,///A/2055,///A/2056,///A/2057,///A/2058,///A/2059,///A/2060,///A/2061,///A/2062,///A/2063", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 13, "nts_short": "GUACCUGUGAAGA", "nts_long": "///A/2050,///A/2051,///A/2052,///A/2053,///A/2054,///A/2055,///A/2056,///A/2057,///A/2058,///A/2059,///A/2060,///A/2061,///A/2062" } ] }, { "index": 47, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ 118 ], "summary": "[1] 8 [A.2056 A.2065] 5", "num_nts": 10, "nts_short": "GUGAAGAUGC", "nts_long": "///A/2056,///A/2057,///A/2058,///A/2059,///A/2060,///A/2061,///A/2062,///A/2063,///A/2064,///A/2065", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "UGAAGAUG", "nts_long": "///A/2057,///A/2058,///A/2059,///A/2060,///A/2061,///A/2062,///A/2063,///A/2064" } ] }, { "index": 48, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 131 ], "summary": "[1] 4 [A.2172 A.2177] 2", "num_nts": 6, "nts_short": "CGCCAG", "nts_long": "///A/2172,///A/2173,///A/2174,///A/2175,///A/2176,///A/2177", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GCCA", "nts_long": "///A/2173,///A/2174,///A/2175,///A/2176" } ] }, { "index": 49, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 133 ], "summary": "[1] 5 [A.2238 A.2244] 6", "num_nts": 7, "nts_short": "CUUAUCG", "nts_long": "///A/2238,///A/2239,///A/2240,///A/2241,///A/2242,///A/2243,///A/2244", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "UUAUC", "nts_long": "///A/2239,///A/2240,///A/2241,///A/2242,///A/2243" } ] }, { "index": 50, "type": "hairpin loop", "bridging_nts": [ 17 ], "stem_indices": [ 134 ], "summary": "[1] 17 [A.2290 A.2308] 2", "num_nts": 19, "nts_short": "CUCCUAAAAGGUAACGGAG", "nts_long": "///A/2290,///A/2291,///A/2292,///A/2293,///A/2294,///A/2295,///A/2296,///A/2297,///A/2298,///A/2299,///A/2300,///A/2301,///A/2302,///A/2303,///A/2304,///A/2305,///A/2306,///A/2307,///A/2308", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 17, "nts_short": "UCCUAAAAGGUAACGGA", "nts_long": "///A/2291,///A/2292,///A/2293,///A/2294,///A/2295,///A/2296,///A/2297,///A/2298,///A/2299,///A/2300,///A/2301,///A/2302,///A/2303,///A/2304,///A/2305,///A/2306,///A/2307" } ] }, { "index": 51, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 136 ], "summary": "[1] 6 [A.2384 A.2391] 2", "num_nts": 8, "nts_short": "CCUACAAG", "nts_long": "///A/2384,///A/2385,///A/2386,///A/2387,///A/2388,///A/2389,///A/2390,///A/2391", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "CUACAA", "nts_long": "///A/2385,///A/2386,///A/2387,///A/2388,///A/2389,///A/2390" } ] }, { "index": 52, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ 137 ], "summary": "[1] 8 [A.2433 A.2442] 2", "num_nts": 10, "nts_short": "CGCAUGGAAG", "nts_long": "///A/2433,///A/2434,///A/2435,///A/2436,///A/2437,///A/2438,///A/2439,///A/2440,///A/2441,///A/2442", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "GCAUGGAA", "nts_long": "///A/2434,///A/2435,///A/2436,///A/2437,///A/2438,///A/2439,///A/2440,///A/2441" } ] }, { "index": 53, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ 140 ], "summary": "[1] 8 [A.2556 A.2565] 5", "num_nts": 10, "nts_short": "CUGUAGUCGG", "nts_long": "///A/2556,///A/2557,///A/2558,///A/2559,///A/2560,///A/2561,///A/2562,///A/2563,///A/2564,///A/2565", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "UGUAGUCG", "nts_long": "///A/2557,///A/2558,///A/2559,///A/2560,///A/2561,///A/2562,///A/2563,///A/2564" } ] }, { "index": 54, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 141 ], "summary": "[1] 5 [A.2580 A.2586] 5", "num_nts": 7, "nts_short": "CUGUUCG", "nts_long": "///A/2580,///A/2581,///A/2582,///A/2583,///A/2584,///A/2585,///A/2586", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "UGUUC", "nts_long": "///A/2581,///A/2582,///A/2583,///A/2584,///A/2585" } ] }, { "index": 55, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 143 ], "summary": "[1] 4 [A.2623 A.2628] 3", "num_nts": 6, "nts_short": "CGUGAG", "nts_long": "///A/2623,///A/2624,///A/2625,///A/2626,///A/2627,///A/2628", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GUGA", "nts_long": "///A/2624,///A/2625,///A/2626,///A/2627" } ] }, { "index": 56, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ -57 ], "summary": "[1] 4 [A.2687 A.2692] 1", "num_nts": 6, "nts_short": "CGAGAG", "nts_long": "///A/2687,///A/2688,///A/2689,///A/2690,///A/2691,///A/2692", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAGA", "nts_long": "///A/2688,///A/2689,///A/2690,///A/2691" } ] }, { "index": 57, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 150 ], "summary": "[1] 4 [A.2730 A.2735] 6", "num_nts": 6, "nts_short": "UGCCAA", "nts_long": "///A/2730,///A/2731,///A/2732,///A/2733,///A/2734,///A/2735", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GCCA", "nts_long": "///A/2731,///A/2732,///A/2733,///A/2734" } ] }, { "index": 58, "type": "hairpin loop", "bridging_nts": [ 13 ], "stem_indices": [ 152 ], "summary": "[1] 13 [A.2774 A.2788] 4", "num_nts": 15, "nts_short": "CUGAAAGCAUCUAAG", "nts_long": "///A/2774,///A/2775,///A/2776,///A/2777,///A/2778,///A/2779,///A/2780,///A/2781,///A/2782,///A/2783,///A/2784,///A/2785,///A/2786,///A/2787,///A/2788", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 13, "nts_short": "UGAAAGCAUCUAA", "nts_long": "///A/2775,///A/2776,///A/2777,///A/2778,///A/2779,///A/2780,///A/2781,///A/2782,///A/2783,///A/2784,///A/2785,///A/2786,///A/2787" } ] }, { "index": 59, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 153 ], "summary": "[1] 4 [A.2823 A.2828] 4", "num_nts": 6, "nts_short": "CGCAAG", "nts_long": "///A/2823,///A/2824,///A/2825,///A/2826,///A/2827,///A/2828", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GCAA", "nts_long": "///A/2824,///A/2825,///A/2826,///A/2827" } ] }, { "index": 60, "type": "hairpin loop", "bridging_nts": [ 7 ], "stem_indices": [ 155 ], "summary": "[1] 7 [A.2844 A.2852] 5", "num_nts": 9, "nts_short": "AAAGAUGAU", "nts_long": "///A/2844,///A/2845,///A/2846,///A/2847,///A/2848,///A/2849,///A/2850,///A/2851,///A/2852", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "AAGAUGA", "nts_long": "///A/2845,///A/2846,///A/2847,///A/2848,///A/2849,///A/2850,///A/2851" } ] }, { "index": 61, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 159 ], "summary": "[1] 4 [A.2881 A.2886] 5", "num_nts": 6, "nts_short": "GGCGAC", "nts_long": "///A/2881,///A/2882,///A/2883,///A/2884,///A/2885,///A/2886", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GCGA", "nts_long": "///A/2882,///A/2883,///A/2884,///A/2885" } ] }, { "index": 62, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ -60 ], "summary": "[1] 5 [B.36 B.42] 1", "num_nts": 7, "nts_short": "CAUACCG", "nts_long": "///B/36,///B/37,///B/38,///B/39,///B/40,///B/41,///B/42", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "AUACC", "nts_long": "///B/37,///B/38,///B/39,///B/40,///B/41" } ] } ], "num_bulges": 28, "bulges": [ { "index": 1, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 4, 5 ], "summary": "[2] 0 1 [A.36 A.491 A.37 A.489] 2 7", "num_nts": 5, "nts_short": "GCGAC", "nts_long": "///A/36,///A/37,///A/489,///A/490,///A/491", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///A/490" } ] }, { "index": 2, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 5, 6 ], "summary": "[2] 0 1 [A.43 A.483 A.44 A.481] 7 2", "num_nts": 5, "nts_short": "GAUCC", "nts_long": "///A/43,///A/44,///A/481,///A/482,///A/483", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///A/482" } ] }, { "index": 3, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ -4, 15 ], "summary": "[2] 0 1 [A.152 A.177 A.153 A.175] 1 6", "num_nts": 5, "nts_short": "CCGAG", "nts_long": "///A/152,///A/153,///A/175,///A/176,///A/177", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///A/176" } ] }, { "index": 4, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ -5, 16 ], "summary": "[2] 0 1 [A.186 A.217 A.187 A.215] 1 5", "num_nts": 5, "nts_short": "CCGAG", "nts_long": "///A/186,///A/187,///A/215,///A/216,///A/217", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///A/216" } ] }, { "index": 5, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ -9, 29 ], "summary": "[2] 1 0 [A.344 A.360 A.346 A.359] 1 4", "num_nts": 5, "nts_short": "GAGCC", "nts_long": "///A/344,///A/345,///A/346,///A/359,///A/360", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///A/345" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 6, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 47, -19 ], "summary": "[2] 0 1 [A.744 A.812 A.745 A.810] 9 1", "num_nts": 5, "nts_short": "CCGAG", "nts_long": "///A/744,///A/745,///A/810,///A/811,///A/812", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///A/811" } ] }, { "index": 7, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 48, -20 ], "summary": "[2] 0 1 [A.749 A.777 A.750 A.775] 3 1", "num_nts": 5, "nts_short": "GUGGC", "nts_long": "///A/749,///A/750,///A/775,///A/776,///A/777", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///A/776" } ] }, { "index": 8, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ 50, 51 ], "summary": "[2] 1 0 [A.785 A.805 A.787 A.804] 3 5", "num_nts": 5, "nts_short": "CACGG", "nts_long": "///A/785,///A/786,///A/787,///A/804,///A/805", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///A/786" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 9, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 55, 56 ], "summary": "[2] 0 1 [A.884 A.988 A.885 A.986] 2 7", "num_nts": 5, "nts_short": "CCGAG", "nts_long": "///A/884,///A/885,///A/986,///A/987,///A/988", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///A/987" } ] }, { "index": 10, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ 63, 64 ], "summary": "[2] 1 0 [A.1040 A.1206 A.1042 A.1205] 4 3", "num_nts": 5, "nts_short": "CCAUG", "nts_long": "///A/1040,///A/1041,///A/1042,///A/1205,///A/1206", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///A/1041" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 11, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ -26, 67 ], "summary": "[2] 1 0 [A.1057 A.1196 A.1059 A.1195] 1 6", "num_nts": 5, "nts_short": "GUAUC", "nts_long": "///A/1057,///A/1058,///A/1059,///A/1195,///A/1196", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///A/1058" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 12, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ 89, 90 ], "summary": "[2] 1 0 [A.1448 A.1638 A.1450 A.1637] 5 6", "num_nts": 5, "nts_short": "UCCGA", "nts_long": "///A/1448,///A/1449,///A/1450,///A/1637,///A/1638", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///A/1449" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 13, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 110, 111 ], "summary": "[2] 0 1 [A.1799 A.2011 A.1800 A.2009] 7 2", "num_nts": 5, "nts_short": "GCGAU", "nts_long": "///A/1799,///A/1800,///A/2009,///A/2010,///A/2011", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///A/2010" } ] }, { "index": 14, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ 115, -44 ], "summary": "[2] 1 0 [A.1873 A.1925 A.1875 A.1924] 2 1", "num_nts": 5, "nts_short": "UGGCA", "nts_long": "///A/1873,///A/1874,///A/1875,///A/1924,///A/1925", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///A/1874" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 15, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ 119, 120 ], "summary": "[2] 1 0 [A.2079 A.2647 A.2081 A.2646] 8 3", "num_nts": 5, "nts_short": "CAGCG", "nts_long": "///A/2079,///A/2080,///A/2081,///A/2646,///A/2647", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///A/2080" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 16, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ 132, 133 ], "summary": "[2] 1 0 [A.2231 A.2250 A.2233 A.2249] 2 6", "num_nts": 5, "nts_short": "CGCGG", "nts_long": "///A/2231,///A/2232,///A/2233,///A/2249,///A/2250", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///A/2232" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 17, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ -51, -52 ], "summary": "[2] 1 0 [A.2329 A.2344 A.2331 A.2343] 1 1", "num_nts": 5, "nts_short": "AAUAU", "nts_long": "///A/2329,///A/2330,///A/2331,///A/2343,///A/2344", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///A/2330" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 18, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 142, 143 ], "summary": "[2] 0 1 [A.2620 A.2632 A.2621 A.2630] 4 3", "num_nts": 5, "nts_short": "CGCAG", "nts_long": "///A/2620,///A/2621,///A/2630,///A/2631,///A/2632", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///A/2631" } ] }, { "index": 19, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 156, 157 ], "summary": "[2] 0 1 [A.2863 A.2905 A.2864 A.2903] 3 5", "num_nts": 5, "nts_short": "GGUAC", "nts_long": "///A/2863,///A/2864,///A/2903,///A/2904,///A/2905", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///A/2904" } ] }, { "index": 20, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 161, 162 ], "summary": "[2] 0 1 [B.15 B.65 B.16 B.63] 2 6", "num_nts": 5, "nts_short": "CGCAG", "nts_long": "///B/15,///B/16,///B/63,///B/64,///B/65", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///B/64" } ] }, { "index": 21, "type": "bulge", "bridging_nts": [ 0, 2 ], "stem_indices": [ 23, 24 ], "summary": "[2] 0 2 [A.305 A.413 A.306 A.410] 4 5", "num_nts": 6, "nts_short": "ACGGAU", "nts_long": "///A/305,///A/306,///A/410,///A/411,///A/412,///A/413", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/411,///A/412" } ] }, { "index": 22, "type": "bulge", "bridging_nts": [ 2, 0 ], "stem_indices": [ 80, -32 ], "summary": "[2] 2 0 [A.1349 A.1649 A.1352 A.1648] 2 1", "num_nts": 6, "nts_short": "GUUUAC", "nts_long": "///A/1349,///A/1350,///A/1351,///A/1352,///A/1648,///A/1649", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/1350,///A/1351" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 23, "type": "bulge", "bridging_nts": [ 2, 0 ], "stem_indices": [ 106, -39 ], "summary": "[2] 2 0 [A.1711 A.2023 A.1714 A.2022] 2 1", "num_nts": 6, "nts_short": "GGAAUC", "nts_long": "///A/1711,///A/1712,///A/1713,///A/1714,///A/2022,///A/2023", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1712,///A/1713" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 24, "type": "bulge", "bridging_nts": [ 0, 2 ], "stem_indices": [ 122, 123 ], "summary": "[2] 0 2 [A.2099 A.2470 A.2100 A.2467] 2 4", "num_nts": 6, "nts_short": "GAUACC", "nts_long": "///A/2099,///A/2100,///A/2467,///A/2468,///A/2469,///A/2470", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/2468,///A/2469" } ] }, { "index": 25, "type": "bulge", "bridging_nts": [ 0, 2 ], "stem_indices": [ 139, 140 ], "summary": "[2] 0 2 [A.2551 A.2572 A.2552 A.2569] 3 5", "num_nts": 6, "nts_short": "UGCAAG", "nts_long": "///A/2551,///A/2552,///A/2569,///A/2570,///A/2571,///A/2572", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/2570,///A/2571" } ] }, { "index": 26, "type": "bulge", "bridging_nts": [ 0, 2 ], "stem_indices": [ 149, 150 ], "summary": "[2] 0 2 [A.2724 A.2743 A.2725 A.2740] 5 6", "num_nts": 6, "nts_short": "UUAUCG", "nts_long": "///A/2724,///A/2725,///A/2740,///A/2741,///A/2742,///A/2743", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 2, "nts_short": "UC", "nts_long": "///A/2741,///A/2742" } ] }, { "index": 27, "type": "bulge", "bridging_nts": [ 7, 0 ], "stem_indices": [ 25, 26 ], "summary": "[2] 7 0 [A.319 A.401 A.327 A.400] 4 7", "num_nts": 11, "nts_short": "GUUACAAAGUC", "nts_long": "///A/319,///A/320,///A/321,///A/322,///A/323,///A/324,///A/325,///A/326,///A/327,///A/400,///A/401", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "UUACAAA", "nts_long": "///A/320,///A/321,///A/322,///A/323,///A/324,///A/325,///A/326" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 28, "type": "bulge", "bridging_nts": [ 9, 0 ], "stem_indices": [ -48, 129 ], "summary": "[2] 9 0 [A.2139 A.2208 A.2149 A.2207] 1 3", "num_nts": 13, "nts_short": "GUACAGGAUAGCC", "nts_long": "///A/2139,///A/2140,///A/2141,///A/2142,///A/2143,///A/2144,///A/2145,///A/2146,///A/2147,///A/2148,///A/2149,///A/2207,///A/2208", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 9, "nts_short": "UACAGGAUA", "nts_long": "///A/2140,///A/2141,///A/2142,///A/2143,///A/2144,///A/2145,///A/2146,///A/2147,///A/2148" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] } ], "num_iloops": 82, "iloops": [ { "index": 1, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 21, 22 ], "summary": "[2] 1 1 [A.279 A.292 A.281 A.290] 4 3", "num_nts": 6, "nts_short": "AGAUCU", "nts_long": "///A/279,///A/280,///A/281,///A/290,///A/291,///A/292", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///A/280" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///A/291" } ] }, { "index": 2, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 26, 27 ], "summary": "[2] 1 1 [A.333 A.394 A.335 A.392] 7 2", "num_nts": 6, "nts_short": "AGGCUU", "nts_long": "///A/333,///A/334,///A/335,///A/392,///A/393,///A/394", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///A/334" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///A/393" } ] }, { "index": 3, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -16, -17 ], "summary": "[2] 1 1 [A.608 A.621 A.610 A.619] 1 1", "num_nts": 6, "nts_short": "CCUAUG", "nts_long": "///A/608,///A/609,///A/610,///A/619,///A/620,///A/621", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///A/609" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///A/620" } ] }, { "index": 4, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 39, 40 ], "summary": "[2] 1 1 [A.639 A.709 A.641 A.707] 7 5", "num_nts": 6, "nts_short": "CUCGUG", "nts_long": "///A/639,///A/640,///A/641,///A/707,///A/708,///A/709", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///A/640" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///A/708" } ] }, { "index": 5, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 45, -18 ], "summary": "[2] 1 1 [A.719 A.855 A.721 A.853] 2 1", "num_nts": 6, "nts_short": "CCGCUG", "nts_long": "///A/719,///A/720,///A/721,///A/853,///A/854,///A/855", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///A/720" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///A/854" } ] }, { "index": 6, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 58, 59 ], "summary": "[2] 1 1 [A.917 A.954 A.919 A.952] 3 2", "num_nts": 6, "nts_short": "AUUAGU", "nts_long": "///A/917,///A/918,///A/919,///A/952,///A/953,///A/954", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///A/918" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///A/953" } ] }, { "index": 7, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 60, 61 ], "summary": "[2] 1 1 [A.998 A.1011 A.1000 A.1009] 7 2", "num_nts": 6, "nts_short": "GAGUCC", "nts_long": "///A/998,///A/999,///A/1000,///A/1009,///A/1010,///A/1011", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///A/999" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///A/1010" } ] }, { "index": 8, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -28, 69 ], "summary": "[2] 1 1 [A.1080 A.1167 A.1082 A.1165] 1 2", "num_nts": 6, "nts_short": "GUGUGC", "nts_long": "///A/1080,///A/1081,///A/1082,///A/1165,///A/1166,///A/1167", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///A/1081" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///A/1166" } ] }, { "index": 9, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 74, 75 ], "summary": "[2] 1 1 [A.1259 A.1270 A.1261 A.1268] 5 2", "num_nts": 6, "nts_short": "GACGAC", "nts_long": "///A/1259,///A/1260,///A/1261,///A/1268,///A/1269,///A/1270", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///A/1260" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///A/1269" } ] }, { "index": 10, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 95, -33 ], "summary": "[2] 1 1 [A.1488 A.1597 A.1490 A.1595] 3 1", "num_nts": 6, "nts_short": "GUAUUC", "nts_long": "///A/1488,///A/1489,///A/1490,///A/1595,///A/1596,///A/1597", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///A/1489" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///A/1596" } ] }, { "index": 11, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 96, -34 ], "summary": "[2] 1 1 [A.1494 A.1509 A.1496 A.1507] 3 1", "num_nts": 6, "nts_short": "GCGUCC", "nts_long": "///A/1494,///A/1495,///A/1496,///A/1507,///A/1508,///A/1509", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///A/1495" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///A/1508" } ] }, { "index": 12, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 105, 106 ], "summary": "[2] 1 1 [A.1708 A.2026 A.1710 A.2024] 8 2", "num_nts": 6, "nts_short": "UAAUCA", "nts_long": "///A/1708,///A/1709,///A/1710,///A/2024,///A/2025,///A/2026", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///A/1709" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///A/2025" } ] }, { "index": 13, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 125, 126 ], "summary": "[2] 1 1 [A.2114 A.2263 A.2116 A.2261] 2 5", "num_nts": 6, "nts_short": "CUGCAG", "nts_long": "///A/2114,///A/2115,///A/2116,///A/2261,///A/2262,///A/2263", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///A/2115" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///A/2262" } ] }, { "index": 14, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -46, -47 ], "summary": "[2] 1 1 [A.2122 A.2225 A.2124 A.2223] 1 1", "num_nts": 6, "nts_short": "GAAUUC", "nts_long": "///A/2122,///A/2123,///A/2124,///A/2223,///A/2224,///A/2225", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///A/2123" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///A/2224" } ] }, { "index": 15, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -47, 127 ], "summary": "[2] 1 1 [A.2124 A.2223 A.2126 A.2221] 1 2", "num_nts": 6, "nts_short": "AUGCCU", "nts_long": "///A/2124,///A/2125,///A/2126,///A/2221,///A/2222,///A/2223", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///A/2125" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///A/2222" } ] }, { "index": 16, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 128, -48 ], "summary": "[2] 1 1 [A.2137 A.2210 A.2139 A.2208] 8 1", "num_nts": 6, "nts_short": "UUGCUG", "nts_long": "///A/2137,///A/2138,///A/2139,///A/2208,///A/2209,///A/2210", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///A/2138" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///A/2209" } ] }, { "index": 17, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 135, -53 ], "summary": "[2] 1 1 [A.2377 A.2398 A.2379 A.2396] 2 1", "num_nts": 6, "nts_short": "UGCGCA", "nts_long": "///A/2377,///A/2378,///A/2379,///A/2396,///A/2397,///A/2398", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///A/2378" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///A/2397" } ] }, { "index": 18, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -61, 165 ], "summary": "[2] 1 1 [B.78 B.94 B.80 B.92] 1 5", "num_nts": 6, "nts_short": "UCGCUG", "nts_long": "///B/78,///B/79,///B/80,///B/92,///B/93,///B/94", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///B/79" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///B/93" } ] }, { "index": 19, "type": "asymmetric internal loop", "bridging_nts": [ 1, 2 ], "stem_indices": [ -24, -25 ], "summary": "[2] 1 2 [A.909 A.962 A.911 A.959] 1 1", "num_nts": 7, "nts_short": "GAGCUCC", "nts_long": "///A/909,///A/910,///A/911,///A/959,///A/960,///A/961,///A/962", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///A/910" }, { "index": 2, "num_nts": 2, "nts_short": "UC", "nts_long": "///A/960,///A/961" } ] }, { "index": 20, "type": "asymmetric internal loop", "bridging_nts": [ 2, 1 ], "stem_indices": [ 68, -28 ], "summary": "[2] 2 1 [A.1077 A.1169 A.1080 A.1167] 2 1", "num_nts": 7, "nts_short": "GAUGCGC", "nts_long": "///A/1077,///A/1078,///A/1079,///A/1080,///A/1167,///A/1168,///A/1169", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/1078,///A/1079" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///A/1168" } ] }, { "index": 21, "type": "asymmetric internal loop", "bridging_nts": [ 1, 2 ], "stem_indices": [ -30, 72 ], "summary": "[2] 1 2 [A.1237 A.1290 A.1239 A.1287] 1 5", "num_nts": 7, "nts_short": "CGUAGUG", "nts_long": "///A/1237,///A/1238,///A/1239,///A/1287,///A/1288,///A/1289,///A/1290", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///A/1238" }, { "index": 2, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/1288,///A/1289" } ] }, { "index": 22, "type": "asymmetric internal loop", "bridging_nts": [ 2, 1 ], "stem_indices": [ 99, 100 ], "summary": "[2] 2 1 [A.1534 A.1547 A.1537 A.1545] 6 2", "num_nts": 7, "nts_short": "AUAGCGU", "nts_long": "///A/1534,///A/1535,///A/1536,///A/1537,///A/1545,///A/1546,///A/1547", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/1535,///A/1536" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///A/1546" } ] }, { "index": 23, "type": "asymmetric internal loop", "bridging_nts": [ 1, 2 ], "stem_indices": [ 120, 121 ], "summary": "[2] 1 2 [A.2083 A.2644 A.2085 A.2641] 3 2", "num_nts": 7, "nts_short": "ACGCUAU", "nts_long": "///A/2083,///A/2084,///A/2085,///A/2641,///A/2642,///A/2643,///A/2644", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///A/2084" }, { "index": 2, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/2642,///A/2643" } ] }, { "index": 24, "type": "asymmetric internal loop", "bridging_nts": [ 1, 2 ], "stem_indices": [ 157, 158 ], "summary": "[2] 1 2 [A.2868 A.2899 A.2870 A.2896] 5 3", "num_nts": 7, "nts_short": "GAGUGAC", "nts_long": "///A/2868,///A/2869,///A/2870,///A/2896,///A/2897,///A/2898,///A/2899", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///A/2869" }, { "index": 2, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/2897,///A/2898" } ] }, { "index": 25, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ -2, 10 ], "summary": "[2] 2 2 [A.62 A.92 A.65 A.89] 1 2", "num_nts": 8, "nts_short": "CGAAUAAG", "nts_long": "///A/62,///A/63,///A/64,///A/65,///A/89,///A/90,///A/91,///A/92", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/63,///A/64" }, { "index": 2, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/90,///A/91" } ] }, { "index": 26, "type": "asymmetric internal loop", "bridging_nts": [ 1, 3 ], "stem_indices": [ 27, 28 ], "summary": "[2] 1 3 [A.336 A.391 A.338 A.387] 2 3", "num_nts": 8, "nts_short": "UAGCAAAA", "nts_long": "///A/336,///A/337,///A/338,///A/387,///A/388,///A/389,///A/390,///A/391", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///A/337" }, { "index": 2, "num_nts": 3, "nts_short": "AAA", "nts_long": "///A/388,///A/389,///A/390" } ] }, { "index": 27, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ 36, 37 ], "summary": "[2] 2 2 [A.582 A.601 A.585 A.598] 4 4", "num_nts": 8, "nts_short": "AGAGUGAU", "nts_long": "///A/582,///A/583,///A/584,///A/585,///A/598,///A/599,///A/600,///A/601", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/583,///A/584" }, { "index": 2, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/599,///A/600" } ] }, { "index": 28, "type": "asymmetric internal loop", "bridging_nts": [ 1, 3 ], "stem_indices": [ -23, 52 ], "summary": "[2] 1 3 [A.822 A.838 A.824 A.834] 1 3", "num_nts": 8, "nts_short": "GGGCAAUC", "nts_long": "///A/822,///A/823,///A/824,///A/834,///A/835,///A/836,///A/837,///A/838", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///A/823" }, { "index": 2, "num_nts": 3, "nts_short": "AAU", "nts_long": "///A/835,///A/836,///A/837" } ] }, { "index": 29, "type": "asymmetric internal loop", "bridging_nts": [ 3, 1 ], "stem_indices": [ 81, 82 ], "summary": "[2] 3 1 [A.1358 A.1372 A.1362 A.1370] 6 2", "num_nts": 8, "nts_short": "GGAAGCGC", "nts_long": "///A/1358,///A/1359,///A/1360,///A/1361,///A/1362,///A/1370,///A/1371,///A/1372", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/1359,///A/1360,///A/1361" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///A/1371" } ] }, { "index": 30, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ 127, 128 ], "summary": "[2] 2 2 [A.2127 A.2220 A.2130 A.2217] 2 8", "num_nts": 8, "nts_short": "UUGGUUGA", "nts_long": "///A/2127,///A/2128,///A/2129,///A/2130,///A/2217,///A/2218,///A/2219,///A/2220", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/2128,///A/2129" }, { "index": 2, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/2218,///A/2219" } ] }, { "index": 31, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ -49, 131 ], "summary": "[2] 2 2 [A.2168 A.2181 A.2171 A.2178] 1 2", "num_nts": 8, "nts_short": "GGAGCUUC", "nts_long": "///A/2168,///A/2169,///A/2170,///A/2171,///A/2178,///A/2179,///A/2180,///A/2181", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/2169,///A/2170" }, { "index": 2, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/2179,///A/2180" } ] }, { "index": 32, "type": "asymmetric internal loop", "bridging_nts": [ 3, 1 ], "stem_indices": [ 147, 148 ], "summary": "[2] 3 1 [A.2709 A.2756 A.2713 A.2754] 5 4", "num_nts": 8, "nts_short": "CCGCUAUG", "nts_long": "///A/2709,///A/2710,///A/2711,///A/2712,///A/2713,///A/2754,///A/2755,///A/2756", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "CGC", "nts_long": "///A/2710,///A/2711,///A/2712" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///A/2755" } ] }, { "index": 33, "type": "asymmetric internal loop", "bridging_nts": [ 1, 3 ], "stem_indices": [ -59, 163 ], "summary": "[2] 1 3 [B.27 B.53 B.29 B.49] 1 2", "num_nts": 8, "nts_short": "ACCGAAGU", "nts_long": "///B/27,///B/28,///B/29,///B/49,///B/50,///B/51,///B/52,///B/53", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///B/28" }, { "index": 2, "num_nts": 3, "nts_short": "AAG", "nts_long": "///B/50,///B/51,///B/52" } ] }, { "index": 34, "type": "asymmetric internal loop", "bridging_nts": [ 3, 2 ], "stem_indices": [ 56, 57 ], "summary": "[2] 3 2 [A.891 A.980 A.895 A.977] 7 5", "num_nts": 9, "nts_short": "GUAAGUAUC", "nts_long": "///A/891,///A/892,///A/893,///A/894,///A/895,///A/977,///A/978,///A/979,///A/980", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UAA", "nts_long": "///A/892,///A/893,///A/894" }, { "index": 2, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/978,///A/979" } ] }, { "index": 35, "type": "asymmetric internal loop", "bridging_nts": [ 3, 2 ], "stem_indices": [ -25, 58 ], "summary": "[2] 3 2 [A.911 A.959 A.915 A.956] 1 3", "num_nts": 9, "nts_short": "GCACUAAAC", "nts_long": "///A/911,///A/912,///A/913,///A/914,///A/915,///A/956,///A/957,///A/958,///A/959", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "CAC", "nts_long": "///A/912,///A/913,///A/914" }, { "index": 2, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/957,///A/958" } ] }, { "index": 36, "type": "asymmetric internal loop", "bridging_nts": [ 3, 2 ], "stem_indices": [ 91, 92 ], "summary": "[2] 3 2 [A.1463 A.1628 A.1467 A.1625] 2 4", "num_nts": 9, "nts_short": "CAAUGCUAG", "nts_long": "///A/1463,///A/1464,///A/1465,///A/1466,///A/1467,///A/1625,///A/1626,///A/1627,///A/1628", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "AAU", "nts_long": "///A/1464,///A/1465,///A/1466" }, { "index": 2, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/1626,///A/1627" } ] }, { "index": 37, "type": "asymmetric internal loop", "bridging_nts": [ 2, 3 ], "stem_indices": [ 93, 94 ], "summary": "[2] 2 3 [A.1478 A.1609 A.1481 A.1605] 4 3", "num_nts": 9, "nts_short": "GGAGCACAC", "nts_long": "///A/1478,///A/1479,///A/1480,///A/1481,///A/1605,///A/1606,///A/1607,///A/1608,///A/1609", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1479,///A/1480" }, { "index": 2, "num_nts": 3, "nts_short": "ACA", "nts_long": "///A/1606,///A/1607,///A/1608" } ] }, { "index": 38, "type": "asymmetric internal loop", "bridging_nts": [ 2, 3 ], "stem_indices": [ 94, 95 ], "summary": "[2] 2 3 [A.1483 A.1603 A.1486 A.1599] 3 3", "num_nts": 9, "nts_short": "AUAGUGAUU", "nts_long": "///A/1483,///A/1484,///A/1485,///A/1486,///A/1599,///A/1600,///A/1601,///A/1602,///A/1603", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/1484,///A/1485" }, { "index": 2, "num_nts": 3, "nts_short": "GAU", "nts_long": "///A/1600,///A/1601,///A/1602" } ] }, { "index": 39, "type": "asymmetric internal loop", "bridging_nts": [ 1, 4 ], "stem_indices": [ 98, 99 ], "summary": "[2] 1 4 [A.1527 A.1557 A.1529 A.1552] 4 6", "num_nts": 9, "nts_short": "CUGCAUAAG", "nts_long": "///A/1527,///A/1528,///A/1529,///A/1552,///A/1553,///A/1554,///A/1555,///A/1556,///A/1557", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///A/1528" }, { "index": 2, "num_nts": 4, "nts_short": "AUAA", "nts_long": "///A/1553,///A/1554,///A/1555,///A/1556" } ] }, { "index": 40, "type": "asymmetric internal loop", "bridging_nts": [ 2, 3 ], "stem_indices": [ -37, 101 ], "summary": "[2] 2 3 [A.1573 A.1594 A.1576 A.1590] 1 2", "num_nts": 9, "nts_short": "CGAGCGAAG", "nts_long": "///A/1573,///A/1574,///A/1575,///A/1576,///A/1590,///A/1591,///A/1592,///A/1593,///A/1594", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1574,///A/1575" }, { "index": 2, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/1591,///A/1592,///A/1593" } ] }, { "index": 41, "type": "asymmetric internal loop", "bridging_nts": [ 4, 1 ], "stem_indices": [ 104, 105 ], "summary": "[2] 4 1 [A.1696 A.2035 A.1701 A.2033] 4 8", "num_nts": 9, "nts_short": "GAGAACGAC", "nts_long": "///A/1696,///A/1697,///A/1698,///A/1699,///A/1700,///A/1701,///A/2033,///A/2034,///A/2035", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "AGAA", "nts_long": "///A/1697,///A/1698,///A/1699,///A/1700" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///A/2034" } ] }, { "index": 42, "type": "asymmetric internal loop", "bridging_nts": [ 3, 2 ], "stem_indices": [ -44, 116 ], "summary": "[2] 3 2 [A.1875 A.1924 A.1879 A.1921] 1 2", "num_nts": 9, "nts_short": "GAAGGCCCC", "nts_long": "///A/1875,///A/1876,///A/1877,///A/1878,///A/1879,///A/1921,///A/1922,///A/1923,///A/1924", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "AAG", "nts_long": "///A/1876,///A/1877,///A/1878" }, { "index": 2, "num_nts": 2, "nts_short": "CC", "nts_long": "///A/1922,///A/1923" } ] }, { "index": 43, "type": "asymmetric internal loop", "bridging_nts": [ 2, 3 ], "stem_indices": [ 124, 125 ], "summary": "[2] 2 3 [A.2110 A.2268 A.2113 A.2264] 5 2", "num_nts": 9, "nts_short": "CAGCGUGGG", "nts_long": "///A/2110,///A/2111,///A/2112,///A/2113,///A/2264,///A/2265,///A/2266,///A/2267,///A/2268", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/2111,///A/2112" }, { "index": 2, "num_nts": 3, "nts_short": "UGG", "nts_long": "///A/2265,///A/2266,///A/2267" } ] }, { "index": 44, "type": "asymmetric internal loop", "bridging_nts": [ 3, 2 ], "stem_indices": [ -54, -55 ], "summary": "[2] 3 2 [A.2490 A.2519 A.2494 A.2516] 1 1", "num_nts": 9, "nts_short": "CUCCCGAGG", "nts_long": "///A/2490,///A/2491,///A/2492,///A/2493,///A/2494,///A/2516,///A/2517,///A/2518,///A/2519", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UCC", "nts_long": "///A/2491,///A/2492,///A/2493" }, { "index": 2, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/2517,///A/2518" } ] }, { "index": 45, "type": "asymmetric internal loop", "bridging_nts": [ 5, 1 ], "stem_indices": [ 24, 25 ], "summary": "[2] 5 1 [A.310 A.406 A.316 A.404] 5 4", "num_nts": 10, "nts_short": "CUGUACGCUG", "nts_long": "///A/310,///A/311,///A/312,///A/313,///A/314,///A/315,///A/316,///A/404,///A/405,///A/406", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "UGUAC", "nts_long": "///A/311,///A/312,///A/313,///A/314,///A/315" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///A/405" } ] }, { "index": 46, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 41, 42 ], "summary": "[2] 3 3 [A.650 A.668 A.654 A.664] 3 3", "num_nts": 10, "nts_short": "UUAAGCGGAG", "nts_long": "///A/650,///A/651,///A/652,///A/653,///A/654,///A/664,///A/665,///A/666,///A/667,///A/668", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UAA", "nts_long": "///A/651,///A/652,///A/653" }, { "index": 2, "num_nts": 3, "nts_short": "GGA", "nts_long": "///A/665,///A/666,///A/667" } ] }, { "index": 47, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ -20, 49 ], "summary": "[2] 3 3 [A.750 A.775 A.754 A.771] 1 6", "num_nts": 10, "nts_short": "UGAAGUGGAG", "nts_long": "///A/750,///A/751,///A/752,///A/753,///A/754,///A/771,///A/772,///A/773,///A/774,///A/775", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/751,///A/752,///A/753" }, { "index": 2, "num_nts": 3, "nts_short": "GGA", "nts_long": "///A/772,///A/773,///A/774" } ] }, { "index": 48, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 64, 65 ], "summary": "[2] 3 3 [A.1044 A.1203 A.1048 A.1199] 3 3", "num_nts": 10, "nts_short": "CUAAGCGAAG", "nts_long": "///A/1044,///A/1045,///A/1046,///A/1047,///A/1048,///A/1199,///A/1200,///A/1201,///A/1202,///A/1203", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UAA", "nts_long": "///A/1045,///A/1046,///A/1047" }, { "index": 2, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/1200,///A/1201,///A/1202" } ] }, { "index": 49, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 72, 73 ], "summary": "[2] 3 3 [A.1243 A.1283 A.1247 A.1279] 5 2", "num_nts": 10, "nts_short": "AAGGGCGCUU", "nts_long": "///A/1243,///A/1244,///A/1245,///A/1246,///A/1247,///A/1279,///A/1280,///A/1281,///A/1282,///A/1283", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "AGG", "nts_long": "///A/1244,///A/1245,///A/1246" }, { "index": 2, "num_nts": 3, "nts_short": "GCU", "nts_long": "///A/1280,///A/1281,///A/1282" } ] }, { "index": 50, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 85, 86 ], "summary": "[2] 3 3 [A.1390 A.1419 A.1394 A.1415] 2 3", "num_nts": 10, "nts_short": "CUAAGCGAUG", "nts_long": "///A/1390,///A/1391,///A/1392,///A/1393,///A/1394,///A/1415,///A/1416,///A/1417,///A/1418,///A/1419", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UAA", "nts_long": "///A/1391,///A/1392,///A/1393" }, { "index": 2, "num_nts": 3, "nts_short": "GAU", "nts_long": "///A/1416,///A/1417,///A/1418" } ] }, { "index": 51, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 86, 87 ], "summary": "[2] 3 3 [A.1396 A.1413 A.1400 A.1409] 3 3", "num_nts": 10, "nts_short": "CGAGGCGUAG", "nts_long": "///A/1396,///A/1397,///A/1398,///A/1399,///A/1400,///A/1409,///A/1410,///A/1411,///A/1412,///A/1413", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GAG", "nts_long": "///A/1397,///A/1398,///A/1399" }, { "index": 2, "num_nts": 3, "nts_short": "GUA", "nts_long": "///A/1410,///A/1411,///A/1412" } ] }, { "index": 52, "type": "asymmetric internal loop", "bridging_nts": [ 4, 2 ], "stem_indices": [ -39, -40 ], "summary": "[2] 4 2 [A.1714 A.2022 A.1719 A.2019] 1 1", "num_nts": 10, "nts_short": "ACUCGGCUGU", "nts_long": "///A/1714,///A/1715,///A/1716,///A/1717,///A/1718,///A/1719,///A/2019,///A/2020,///A/2021,///A/2022", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "CUCG", "nts_long": "///A/1715,///A/1716,///A/1717,///A/1718" }, { "index": 2, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/2020,///A/2021" } ] }, { "index": 53, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 116, 117 ], "summary": "[2] 3 3 [A.1880 A.1920 A.1884 A.1916] 2 2", "num_nts": 10, "nts_short": "UUAAGUGAAG", "nts_long": "///A/1880,///A/1881,///A/1882,///A/1883,///A/1884,///A/1916,///A/1917,///A/1918,///A/1919,///A/1920", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UAA", "nts_long": "///A/1881,///A/1882,///A/1883" }, { "index": 2, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/1917,///A/1918,///A/1919" } ] }, { "index": 54, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ -53, 136 ], "summary": "[2] 3 3 [A.2379 A.2396 A.2383 A.2392] 1 2", "num_nts": 10, "nts_short": "CGAGAUCGAG", "nts_long": "///A/2379,///A/2380,///A/2381,///A/2382,///A/2383,///A/2392,///A/2393,///A/2394,///A/2395,///A/2396", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GAG", "nts_long": "///A/2380,///A/2381,///A/2382" }, { "index": 2, "num_nts": 3, "nts_short": "CGA", "nts_long": "///A/2393,///A/2394,///A/2395" } ] }, { "index": 55, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 148, 149 ], "summary": "[2] 3 3 [A.2716 A.2751 A.2720 A.2747] 4 5", "num_nts": 10, "nts_short": "UGUACGGUAG", "nts_long": "///A/2716,///A/2717,///A/2718,///A/2719,///A/2720,///A/2747,///A/2748,///A/2749,///A/2750,///A/2751", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GUA", "nts_long": "///A/2717,///A/2718,///A/2719" }, { "index": 2, "num_nts": 3, "nts_short": "GUA", "nts_long": "///A/2748,///A/2749,///A/2750" } ] }, { "index": 56, "type": "asymmetric internal loop", "bridging_nts": [ 4, 3 ], "stem_indices": [ 108, 109 ], "summary": "[2] 4 3 [A.1756 A.1776 A.1761 A.1772] 5 4", "num_nts": 11, "nts_short": "UGUUAGCGAGA", "nts_long": "///A/1756,///A/1757,///A/1758,///A/1759,///A/1760,///A/1761,///A/1772,///A/1773,///A/1774,///A/1775,///A/1776", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GUUA", "nts_long": "///A/1757,///A/1758,///A/1759,///A/1760" }, { "index": 2, "num_nts": 3, "nts_short": "GAG", "nts_long": "///A/1773,///A/1774,///A/1775" } ] }, { "index": 57, "type": "asymmetric internal loop", "bridging_nts": [ 4, 3 ], "stem_indices": [ 158, 159 ], "summary": "[2] 4 3 [A.2872 A.2894 A.2877 A.2890] 3 5 k-turn:undecided", "num_nts": 11, "nts_short": "UGGAAGUGGAG", "nts_long": "///A/2872,///A/2873,///A/2874,///A/2875,///A/2876,///A/2877,///A/2890,///A/2891,///A/2892,///A/2893,///A/2894", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GGAA", "nts_long": "///A/2873,///A/2874,///A/2875,///A/2876" }, { "index": 2, "num_nts": 3, "nts_short": "GGA", "nts_long": "///A/2891,///A/2892,///A/2893" } ] }, { "index": 58, "type": "asymmetric internal loop", "bridging_nts": [ 5, 3 ], "stem_indices": [ 67, -27 ], "summary": "[2] 5 3 [A.1064 A.1190 A.1070 A.1186] 6 1", "num_nts": 12, "nts_short": "UUAAGUGCUAAA", "nts_long": "///A/1064,///A/1065,///A/1066,///A/1067,///A/1068,///A/1069,///A/1070,///A/1186,///A/1187,///A/1188,///A/1189,///A/1190", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "UAAGU", "nts_long": "///A/1065,///A/1066,///A/1067,///A/1068,///A/1069" }, { "index": 2, "num_nts": 3, "nts_short": "UAA", "nts_long": "///A/1187,///A/1188,///A/1189" } ] }, { "index": 59, "type": "symmetric internal loop", "bridging_nts": [ 4, 4 ], "stem_indices": [ 69, 70 ], "summary": "[2] 4 4 [A.1083 A.1164 A.1088 A.1159] 2 2", "num_nts": 12, "nts_short": "GAGUUGUGACUC", "nts_long": "///A/1083,///A/1084,///A/1085,///A/1086,///A/1087,///A/1088,///A/1159,///A/1160,///A/1161,///A/1162,///A/1163,///A/1164", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "AGUU", "nts_long": "///A/1084,///A/1085,///A/1086,///A/1087" }, { "index": 2, "num_nts": 4, "nts_short": "GACU", "nts_long": "///A/1160,///A/1161,///A/1162,///A/1163" } ] }, { "index": 60, "type": "asymmetric internal loop", "bridging_nts": [ 6, 2 ], "stem_indices": [ 90, 91 ], "summary": "[2] 6 2 [A.1455 A.1632 A.1462 A.1629] 6 2 k-turn:normal", "num_nts": 12, "nts_short": "CAUUUGAGCGAG", "nts_long": "///A/1455,///A/1456,///A/1457,///A/1458,///A/1459,///A/1460,///A/1461,///A/1462,///A/1629,///A/1630,///A/1631,///A/1632", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "AUUUGA", "nts_long": "///A/1456,///A/1457,///A/1458,///A/1459,///A/1460,///A/1461" }, { "index": 2, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1630,///A/1631" } ] }, { "index": 61, "type": "symmetric internal loop", "bridging_nts": [ 4, 4 ], "stem_indices": [ 97, -36 ], "summary": "[2] 4 4 [A.1514 A.1571 A.1519 A.1566] 2 1", "num_nts": 12, "nts_short": "CCAAGCGUGAUG", "nts_long": "///A/1514,///A/1515,///A/1516,///A/1517,///A/1518,///A/1519,///A/1566,///A/1567,///A/1568,///A/1569,///A/1570,///A/1571", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "CAAG", "nts_long": "///A/1515,///A/1516,///A/1517,///A/1518" }, { "index": 2, "num_nts": 4, "nts_short": "UGAU", "nts_long": "///A/1567,///A/1568,///A/1569,///A/1570" } ] }, { "index": 62, "type": "symmetric internal loop", "bridging_nts": [ 4, 4 ], "stem_indices": [ 151, 152 ], "summary": "[2] 4 4 [A.2766 A.2796 A.2771 A.2791] 3 4", "num_nts": 12, "nts_short": "GAUAAGUGAAGC", "nts_long": "///A/2766,///A/2767,///A/2768,///A/2769,///A/2770,///A/2771,///A/2791,///A/2792,///A/2793,///A/2794,///A/2795,///A/2796", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "AUAA", "nts_long": "///A/2767,///A/2768,///A/2769,///A/2770" }, { "index": 2, "num_nts": 4, "nts_short": "GAAG", "nts_long": "///A/2792,///A/2793,///A/2794,///A/2795" } ] }, { "index": 63, "type": "asymmetric internal loop", "bridging_nts": [ 3, 6 ], "stem_indices": [ 11, 12 ], "summary": "[2] 3 6 [A.81 A.104 A.85 A.97] 6 3 k-turn:normal", "num_nts": 13, "nts_short": "GGGAGCUUUGAUC", "nts_long": "///A/81,///A/82,///A/83,///A/84,///A/85,///A/97,///A/98,///A/99,///A/100,///A/101,///A/102,///A/103,///A/104", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GGA", "nts_long": "///A/82,///A/83,///A/84" }, { "index": 2, "num_nts": 6, "nts_short": "UUUGAU", "nts_long": "///A/98,///A/99,///A/100,///A/101,///A/102,///A/103" } ] }, { "index": 64, "type": "asymmetric internal loop", "bridging_nts": [ 3, 6 ], "stem_indices": [ -18, 46 ], "summary": "[2] 3 6 [A.721 A.853 A.725 A.846] 1 6", "num_nts": 13, "nts_short": "GAAACGAGAUAGC", "nts_long": "///A/721,///A/722,///A/723,///A/724,///A/725,///A/846,///A/847,///A/848,///A/849,///A/850,///A/851,///A/852,///A/853", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "AAA", "nts_long": "///A/722,///A/723,///A/724" }, { "index": 2, "num_nts": 6, "nts_short": "AGAUAG", "nts_long": "///A/847,///A/848,///A/849,///A/850,///A/851,///A/852" } ] }, { "index": 65, "type": "asymmetric internal loop", "bridging_nts": [ 6, 3 ], "stem_indices": [ 73, 74 ], "summary": "[2] 6 3 [A.1248 A.1278 A.1255 A.1274] 2 5 k-turn:normal", "num_nts": 13, "nts_short": "CUGUGAAGUGGAG", "nts_long": "///A/1248,///A/1249,///A/1250,///A/1251,///A/1252,///A/1253,///A/1254,///A/1255,///A/1274,///A/1275,///A/1276,///A/1277,///A/1278", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "UGUGAA", "nts_long": "///A/1249,///A/1250,///A/1251,///A/1252,///A/1253,///A/1254" }, { "index": 2, "num_nts": 3, "nts_short": "GGA", "nts_long": "///A/1275,///A/1276,///A/1277" } ] }, { "index": 66, "type": "asymmetric internal loop", "bridging_nts": [ 4, 5 ], "stem_indices": [ -36, 98 ], "summary": "[2] 4 5 [A.1519 A.1566 A.1524 A.1560] 1 4", "num_nts": 13, "nts_short": "CAGUUAUGAGCUG", "nts_long": "///A/1519,///A/1520,///A/1521,///A/1522,///A/1523,///A/1524,///A/1560,///A/1561,///A/1562,///A/1563,///A/1564,///A/1565,///A/1566", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "AGUU", "nts_long": "///A/1520,///A/1521,///A/1522,///A/1523" }, { "index": 2, "num_nts": 5, "nts_short": "GAGCU", "nts_long": "///A/1561,///A/1562,///A/1563,///A/1564,///A/1565" } ] }, { "index": 67, "type": "asymmetric internal loop", "bridging_nts": [ 4, 5 ], "stem_indices": [ 107, -41 ], "summary": "[2] 4 5 [A.1731 A.1747 A.1736 A.1741] 5 1", "num_nts": 13, "nts_short": "CGUAACGGAGAAG", "nts_long": "///A/1731,///A/1732,///A/1733,///A/1734,///A/1735,///A/1736,///A/1741,///A/1742,///A/1743,///A/1744,///A/1745,///A/1746,///A/1747", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GUAA", "nts_long": "///A/1732,///A/1733,///A/1734,///A/1735" }, { "index": 2, "num_nts": 5, "nts_short": "GAGAA", "nts_long": "///A/1742,///A/1743,///A/1744,///A/1745,///A/1746" } ] }, { "index": 68, "type": "asymmetric internal loop", "bridging_nts": [ 5, 4 ], "stem_indices": [ 162, -59 ], "summary": "[2] 5 4 [B.21 B.58 B.27 B.53] 6 1", "num_nts": 13, "nts_short": "GGUCACAUUAAGC", "nts_long": "///B/21,///B/22,///B/23,///B/24,///B/25,///B/26,///B/27,///B/53,///B/54,///B/55,///B/56,///B/57,///B/58", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GUCAC", "nts_long": "///B/22,///B/23,///B/24,///B/25,///B/26" }, { "index": 2, "num_nts": 4, "nts_short": "UAAG", "nts_long": "///B/54,///B/55,///B/56,///B/57" } ] }, { "index": 69, "type": "symmetric internal loop", "bridging_nts": [ 5, 5 ], "stem_indices": [ 2, -1 ], "summary": "[2] 5 5 [A.24 A.562 A.30 A.556] 10 1", "num_nts": 14, "nts_short": "GUGGAUGCUGAAAC", "nts_long": "///A/24,///A/25,///A/26,///A/27,///A/28,///A/29,///A/30,///A/556,///A/557,///A/558,///A/559,///A/560,///A/561,///A/562", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "UGGAU", "nts_long": "///A/25,///A/26,///A/27,///A/28,///A/29" }, { "index": 2, "num_nts": 5, "nts_short": "UGAAA", "nts_long": "///A/557,///A/558,///A/559,///A/560,///A/561" } ] }, { "index": 70, "type": "asymmetric internal loop", "bridging_nts": [ 3, 7 ], "stem_indices": [ 144, 145 ], "summary": "[2] 3 7 [A.2665 A.2811 A.2669 A.2803] 7 4", "num_nts": 14, "nts_short": "UUGAGCAAGAUGAG", "nts_long": "///A/2665,///A/2666,///A/2667,///A/2668,///A/2669,///A/2803,///A/2804,///A/2805,///A/2806,///A/2807,///A/2808,///A/2809,///A/2810,///A/2811", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UGA", "nts_long": "///A/2666,///A/2667,///A/2668" }, { "index": 2, "num_nts": 7, "nts_short": "AAGAUGA", "nts_long": "///A/2804,///A/2805,///A/2806,///A/2807,///A/2808,///A/2809,///A/2810" } ] }, { "index": 71, "type": "symmetric internal loop", "bridging_nts": [ 5, 5 ], "stem_indices": [ 163, -60 ], "summary": "[2] 5 5 [B.30 B.48 B.36 B.42] 2 1", "num_nts": 14, "nts_short": "CGUUCCCGAACACG", "nts_long": "///B/30,///B/31,///B/32,///B/33,///B/34,///B/35,///B/36,///B/42,///B/43,///B/44,///B/45,///B/46,///B/47,///B/48", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GUUCC", "nts_long": "///B/31,///B/32,///B/33,///B/34,///B/35" }, { "index": 2, "num_nts": 5, "nts_short": "AACAC", "nts_long": "///B/43,///B/44,///B/45,///B/46,///B/47" } ] }, { "index": 72, "type": "asymmetric internal loop", "bridging_nts": [ 5, 6 ], "stem_indices": [ 16, -6 ], "summary": "[2] 5 6 [A.191 A.211 A.197 A.204] 5 1", "num_nts": 15, "nts_short": "GGAACUGCUAAGUAC", "nts_long": "///A/191,///A/192,///A/193,///A/194,///A/195,///A/196,///A/197,///A/204,///A/205,///A/206,///A/207,///A/208,///A/209,///A/210,///A/211", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GAACU", "nts_long": "///A/192,///A/193,///A/194,///A/195,///A/196" }, { "index": 2, "num_nts": 6, "nts_short": "UAAGUA", "nts_long": "///A/205,///A/206,///A/207,///A/208,///A/209,///A/210" } ] }, { "index": 73, "type": "asymmetric internal loop", "bridging_nts": [ 6, 5 ], "stem_indices": [ 18, 19 ], "summary": "[2] 6 5 [A.241 A.262 A.248 A.256] 4 2", "num_nts": 15, "nts_short": "CUGAGUAGCGAAACG", "nts_long": "///A/241,///A/242,///A/243,///A/244,///A/245,///A/246,///A/247,///A/248,///A/256,///A/257,///A/258,///A/259,///A/260,///A/261,///A/262", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "UGAGUA", "nts_long": "///A/242,///A/243,///A/244,///A/245,///A/246,///A/247" }, { "index": 2, "num_nts": 5, "nts_short": "GAAAC", "nts_long": "///A/257,///A/258,///A/259,///A/260,///A/261" } ] }, { "index": 74, "type": "asymmetric internal loop", "bridging_nts": [ 6, 5 ], "stem_indices": [ -31, 76 ], "summary": "[2] 6 5 [A.1302 A.2046 A.1309 A.2040] 1 2", "num_nts": 15, "nts_short": "AUGAGUAGUGAAAUU", "nts_long": "///A/1302,///A/1303,///A/1304,///A/1305,///A/1306,///A/1307,///A/1308,///A/1309,///A/2040,///A/2041,///A/2042,///A/2043,///A/2044,///A/2045,///A/2046", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "UGAGUA", "nts_long": "///A/1303,///A/1304,///A/1305,///A/1306,///A/1307,///A/1308" }, { "index": 2, "num_nts": 5, "nts_short": "GAAAU", "nts_long": "///A/2041,///A/2042,///A/2043,///A/2044,///A/2045" } ] }, { "index": 75, "type": "asymmetric internal loop", "bridging_nts": [ 6, 5 ], "stem_indices": [ 146, -57 ], "summary": "[2] 6 5 [A.2680 A.2698 A.2687 A.2692] 6 1", "num_nts": 15, "nts_short": "CUUAGUACGGACCGG", "nts_long": "///A/2680,///A/2681,///A/2682,///A/2683,///A/2684,///A/2685,///A/2686,///A/2687,///A/2692,///A/2693,///A/2694,///A/2695,///A/2696,///A/2697,///A/2698", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "UUAGUA", "nts_long": "///A/2681,///A/2682,///A/2683,///A/2684,///A/2685,///A/2686" }, { "index": 2, "num_nts": 5, "nts_short": "GACCG", "nts_long": "///A/2693,///A/2694,///A/2695,///A/2696,///A/2697" } ] }, { "index": 76, "type": "asymmetric internal loop", "bridging_nts": [ 5, 7 ], "stem_indices": [ 113, 114 ], "summary": "[2] 5 7 [A.1827 A.1850 A.1833 A.1842] 7 3 k-turn:undecided", "num_nts": 16, "nts_short": "UGCGAAGCGAAGUAUA", "nts_long": "///A/1827,///A/1828,///A/1829,///A/1830,///A/1831,///A/1832,///A/1833,///A/1842,///A/1843,///A/1844,///A/1845,///A/1846,///A/1847,///A/1848,///A/1849,///A/1850", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GCGAA", "nts_long": "///A/1828,///A/1829,///A/1830,///A/1831,///A/1832" }, { "index": 2, "num_nts": 7, "nts_short": "GAAGUAU", "nts_long": "///A/1843,///A/1844,///A/1845,///A/1846,///A/1847,///A/1848,///A/1849" } ] }, { "index": 77, "type": "asymmetric internal loop", "bridging_nts": [ 2, 12 ], "stem_indices": [ -12, 35 ], "summary": "[2] 2 12 [A.528 A.555 A.531 A.542] 1 4", "num_nts": 18, "nts_short": "GCACGAGUGAAAGAGAUC", "nts_long": "///A/528,///A/529,///A/530,///A/531,///A/542,///A/543,///A/544,///A/545,///A/546,///A/547,///A/548,///A/549,///A/550,///A/551,///A/552,///A/553,///A/554,///A/555", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/529,///A/530" }, { "index": 2, "num_nts": 12, "nts_short": "AGUGAAAGAGAU", "nts_long": "///A/543,///A/544,///A/545,///A/546,///A/547,///A/548,///A/549,///A/550,///A/551,///A/552,///A/553,///A/554" } ] }, { "index": 78, "type": "symmetric internal loop", "bridging_nts": [ 8, 8 ], "stem_indices": [ 164, -61 ], "summary": "[2] 8 8 [B.69 B.103 B.78 B.94] 2 1", "num_nts": 20, "nts_short": "CGAUGGUAGUGUGAGAGUAG", "nts_long": "///B/69,///B/70,///B/71,///B/72,///B/73,///B/74,///B/75,///B/76,///B/77,///B/78,///B/94,///B/95,///B/96,///B/97,///B/98,///B/99,///B/100,///B/101,///B/102,///B/103", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "GAUGGUAG", "nts_long": "///B/70,///B/71,///B/72,///B/73,///B/74,///B/75,///B/76,///B/77" }, { "index": 2, "num_nts": 8, "nts_short": "UGAGAGUA", "nts_long": "///B/95,///B/96,///B/97,///B/98,///B/99,///B/100,///B/101,///B/102" } ] }, { "index": 79, "type": "asymmetric internal loop", "bridging_nts": [ 10, 7 ], "stem_indices": [ 130, -49 ], "summary": "[2] 10 7 [A.2157 A.2189 A.2168 A.2181] 2 1", "num_nts": 21, "nts_short": "CCUUGGAAACCGCGGUGGAGG", "nts_long": "///A/2157,///A/2158,///A/2159,///A/2160,///A/2161,///A/2162,///A/2163,///A/2164,///A/2165,///A/2166,///A/2167,///A/2168,///A/2181,///A/2182,///A/2183,///A/2184,///A/2185,///A/2186,///A/2187,///A/2188,///A/2189", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 10, "nts_short": "CUUGGAAACC", "nts_long": "///A/2158,///A/2159,///A/2160,///A/2161,///A/2162,///A/2163,///A/2164,///A/2165,///A/2166,///A/2167" }, { "index": 2, "num_nts": 7, "nts_short": "GGUGGAG", "nts_long": "///A/2182,///A/2183,///A/2184,///A/2185,///A/2186,///A/2187,///A/2188" } ] }, { "index": 80, "type": "asymmetric internal loop", "bridging_nts": [ 4, 14 ], "stem_indices": [ 129, 130 ], "summary": "[2] 4 14 [A.2151 A.2205 A.2156 A.2190] 3 2", "num_nts": 22, "nts_short": "UAGGAGCAUCGGUGGGAUACUA", "nts_long": "///A/2151,///A/2152,///A/2153,///A/2154,///A/2155,///A/2156,///A/2190,///A/2191,///A/2192,///A/2193,///A/2194,///A/2195,///A/2196,///A/2197,///A/2198,///A/2199,///A/2200,///A/2201,///A/2202,///A/2203,///A/2204,///A/2205", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "AGGA", "nts_long": "///A/2152,///A/2153,///A/2154,///A/2155" }, { "index": 2, "num_nts": 14, "nts_short": "AUCGGUGGGAUACU", "nts_long": "///A/2191,///A/2192,///A/2193,///A/2194,///A/2195,///A/2196,///A/2197,///A/2198,///A/2199,///A/2200,///A/2201,///A/2202,///A/2203,///A/2204" } ] }, { "index": 81, "type": "asymmetric internal loop", "bridging_nts": [ 9, 10 ], "stem_indices": [ 57, -24 ], "summary": "[2] 9 10 [A.899 A.973 A.909 A.962] 5 1", "num_nts": 23, "nts_short": "CUUGGAGGUAGCGAAUGCCAAUG", "nts_long": "///A/899,///A/900,///A/901,///A/902,///A/903,///A/904,///A/905,///A/906,///A/907,///A/908,///A/909,///A/962,///A/963,///A/964,///A/965,///A/966,///A/967,///A/968,///A/969,///A/970,///A/971,///A/972,///A/973", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 9, "nts_short": "UUGGAGGUA", "nts_long": "///A/900,///A/901,///A/902,///A/903,///A/904,///A/905,///A/906,///A/907,///A/908" }, { "index": 2, "num_nts": 10, "nts_short": "GAAUGCCAAU", "nts_long": "///A/963,///A/964,///A/965,///A/966,///A/967,///A/968,///A/969,///A/970,///A/971,///A/972" } ] }, { "index": 82, "type": "asymmetric internal loop", "bridging_nts": [ 4, 21 ], "stem_indices": [ -50, -51 ], "summary": "[2] 4 21 [A.2324 A.2366 A.2329 A.2344] 1 1", "num_nts": 29, "nts_short": "CUCAGAUUCGCAGAGUGUAAAGGCACAAG", "nts_long": "///A/2324,///A/2325,///A/2326,///A/2327,///A/2328,///A/2329,///A/2344,///A/2345,///A/2346,///A/2347,///A/2348,///A/2349,///A/2350,///A/2351,///A/2352,///A/2353,///A/2354,///A/2355,///A/2356,///A/2357,///A/2358,///A/2359,///A/2360,///A/2361,///A/2362,///A/2363,///A/2364,///A/2365,///A/2366", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "UCAG", "nts_long": "///A/2325,///A/2326,///A/2327,///A/2328" }, { "index": 2, "num_nts": 21, "nts_short": "UCGCAGAGUGUAAAGGCACAA", "nts_long": "///A/2345,///A/2346,///A/2347,///A/2348,///A/2349,///A/2350,///A/2351,///A/2352,///A/2353,///A/2354,///A/2355,///A/2356,///A/2357,///A/2358,///A/2359,///A/2360,///A/2361,///A/2362,///A/2363,///A/2364,///A/2365" } ] } ], "num_junctions": 27, "junctions": [ { "index": 1, "type": "3-way junction", "bridging_nts": [ 0, 6, 0 ], "stem_indices": [ -1, 3, -12 ], "summary": "[3] 0 6 0 [A.30 A.556 A.31 A.521 A.528 A.555] 1 2 1", "num_nts": 12, "nts_short": "GCGUGAAAAGCC", "nts_long": "///A/30,///A/31,///A/521,///A/522,///A/523,///A/524,///A/525,///A/526,///A/527,///A/528,///A/555,///A/556", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 6, "nts_short": "UGAAAA", "nts_long": "///A/522,///A/523,///A/524,///A/525,///A/526,///A/527" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 2, "type": "3-way junction", "bridging_nts": [ 1, 3, 2 ], "stem_indices": [ -19, 48, 50 ], "summary": "[3] 1 3 2 [A.745 A.810 A.747 A.779 A.783 A.807] 1 3 3", "num_nts": 12, "nts_short": "CAGCGAACGAUG", "nts_long": "///A/745,///A/746,///A/747,///A/779,///A/780,///A/781,///A/782,///A/783,///A/807,///A/808,///A/809,///A/810", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///A/746" }, { "index": 2, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/780,///A/781,///A/782" }, { "index": 3, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/808,///A/809" } ] }, { "index": 3, "type": "3-way junction", "bridging_nts": [ 4, 1, 2 ], "stem_indices": [ 78, 79, 103 ], "summary": "[3] 4 1 2 [A.1337 A.1687 A.1342 A.1670 A.1672 A.1684] 4 3 4", "num_nts": 13, "nts_short": "CGAAUGCGAUAAG", "nts_long": "///A/1337,///A/1338,///A/1339,///A/1340,///A/1341,///A/1342,///A/1670,///A/1671,///A/1672,///A/1684,///A/1685,///A/1686,///A/1687", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAAU", "nts_long": "///A/1338,///A/1339,///A/1340,///A/1341" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///A/1671" }, { "index": 3, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/1685,///A/1686" } ] }, { "index": 4, "type": "3-way junction", "bridging_nts": [ 0, 4, 3 ], "stem_indices": [ 154, 155, 156 ], "summary": "[3] 0 4 3 [A.2839 A.2911 A.2840 A.2856 A.2861 A.2907] 4 5 3", "num_nts": 13, "nts_short": "CCGUUGAUAAUCG", "nts_long": "///A/2839,///A/2840,///A/2856,///A/2857,///A/2858,///A/2859,///A/2860,///A/2861,///A/2907,///A/2908,///A/2909,///A/2910,///A/2911", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 4, "nts_short": "UUGA", "nts_long": "///A/2857,///A/2858,///A/2859,///A/2860" }, { "index": 3, "num_nts": 3, "nts_short": "AUC", "nts_long": "///A/2908,///A/2909,///A/2910" } ] }, { "index": 5, "type": "3-way junction", "bridging_nts": [ 4, 1, 2 ], "stem_indices": [ 160, 161, 164 ], "summary": "[3] 4 1 2 [B.9 B.107 B.14 B.66 B.68 B.104] 7 2 2", "num_nts": 13, "nts_short": "CGAUAGCGCGACG", "nts_long": "///B/9,///B/10,///B/11,///B/12,///B/13,///B/14,///B/66,///B/67,///B/68,///B/104,///B/105,///B/106,///B/107", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAUA", "nts_long": "///B/10,///B/11,///B/12,///B/13" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///B/67" }, { "index": 3, "num_nts": 2, "nts_short": "AC", "nts_long": "///B/105,///B/106" } ] }, { "index": 6, "type": "3-way junction", "bridging_nts": [ 5, 1, 2 ], "stem_indices": [ 46, 47, -23 ], "summary": "[3] 5 1 2 [A.730 A.841 A.736 A.820 A.822 A.838] 6 9 1", "num_nts": 14, "nts_short": "UGAUCUAUAGCGAA", "nts_long": "///A/730,///A/731,///A/732,///A/733,///A/734,///A/735,///A/736,///A/820,///A/821,///A/822,///A/838,///A/839,///A/840,///A/841", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GAUCU", "nts_long": "///A/731,///A/732,///A/733,///A/734,///A/735" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///A/821" }, { "index": 3, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/839,///A/840" } ] }, { "index": 7, "type": "3-way junction", "bridging_nts": [ 2, 1, 5 ], "stem_indices": [ 138, 139, 141 ], "summary": "[3] 2 1 5 [A.2546 A.2596 A.2549 A.2574 A.2576 A.2590] 5 3 5", "num_nts": 14, "nts_short": "CAUCGUUAUUAAAG", "nts_long": "///A/2546,///A/2547,///A/2548,///A/2549,///A/2574,///A/2575,///A/2576,///A/2590,///A/2591,///A/2592,///A/2593,///A/2594,///A/2595,///A/2596", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/2547,///A/2548" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///A/2575" }, { "index": 3, "num_nts": 5, "nts_short": "UUAAA", "nts_long": "///A/2591,///A/2592,///A/2593,///A/2594,///A/2595" } ] }, { "index": 8, "type": "3-way junction", "bridging_nts": [ 1, 4, 3 ], "stem_indices": [ -58, 153, 154 ], "summary": "[3] 1 4 3 [A.2818 A.2918 A.2820 A.2831 A.2836 A.2914] 1 4 4", "num_nts": 14, "nts_short": "CAUAGUAAGCGAGG", "nts_long": "///A/2818,///A/2819,///A/2820,///A/2831,///A/2832,///A/2833,///A/2834,///A/2835,///A/2836,///A/2914,///A/2915,///A/2916,///A/2917,///A/2918", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///A/2819" }, { "index": 2, "num_nts": 4, "nts_short": "GUAA", "nts_long": "///A/2832,///A/2833,///A/2834,///A/2835" }, { "index": 3, "num_nts": 3, "nts_short": "GAG", "nts_long": "///A/2915,///A/2916,///A/2917" } ] }, { "index": 9, "type": "3-way junction", "bridging_nts": [ 4, 0, 5 ], "stem_indices": [ 92, 93, -38 ], "summary": "[3] 4 0 5 [A.1470 A.1622 A.1475 A.1612 A.1613 A.1616] 4 4 1", "num_nts": 15, "nts_short": "GGGACGCCGAAAAGC", "nts_long": "///A/1470,///A/1471,///A/1472,///A/1473,///A/1474,///A/1475,///A/1612,///A/1613,///A/1616,///A/1617,///A/1618,///A/1619,///A/1620,///A/1621,///A/1622", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GGAC", "nts_long": "///A/1471,///A/1472,///A/1473,///A/1474" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 5, "nts_short": "AAAAG", "nts_long": "///A/1617,///A/1618,///A/1619,///A/1620,///A/1621" } ] }, { "index": 10, "type": "3-way junction", "bridging_nts": [ 3, 5, 2 ], "stem_indices": [ 79, 80, 102 ], "summary": "[3] 3 5 2 [A.1344 A.1668 A.1348 A.1650 A.1656 A.1665] 3 2 2", "num_nts": 16, "nts_short": "CUAAGCGCAAACGUAG", "nts_long": "///A/1344,///A/1345,///A/1346,///A/1347,///A/1348,///A/1650,///A/1651,///A/1652,///A/1653,///A/1654,///A/1655,///A/1656,///A/1665,///A/1666,///A/1667,///A/1668", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UAA", "nts_long": "///A/1345,///A/1346,///A/1347" }, { "index": 2, "num_nts": 5, "nts_short": "GCAAA", "nts_long": "///A/1651,///A/1652,///A/1653,///A/1654,///A/1655" }, { "index": 3, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/1666,///A/1667" } ] }, { "index": 11, "type": "3-way junction", "bridging_nts": [ 1, 4, 5 ], "stem_indices": [ 126, -46, 132 ], "summary": "[3] 1 4 5 [A.2120 A.2257 A.2122 A.2225 A.2230 A.2251] 5 1 2", "num_nts": 16, "nts_short": "UUGCUAACCGAGACAG", "nts_long": "///A/2120,///A/2121,///A/2122,///A/2225,///A/2226,///A/2227,///A/2228,///A/2229,///A/2230,///A/2251,///A/2252,///A/2253,///A/2254,///A/2255,///A/2256,///A/2257", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///A/2121" }, { "index": 2, "num_nts": 4, "nts_short": "UAAC", "nts_long": "///A/2226,///A/2227,///A/2228,///A/2229" }, { "index": 3, "num_nts": 5, "nts_short": "AGACA", "nts_long": "///A/2252,///A/2253,///A/2254,///A/2255,///A/2256" } ] }, { "index": 12, "type": "3-way junction", "bridging_nts": [ 2, 15, 4 ], "stem_indices": [ 3, 4, 34 ], "summary": "[3] 2 15 4 [A.32 A.520 A.35 A.492 A.508 A.515] 2 2 2", "num_nts": 27, "nts_short": "CUUGCGAUAGUGAACCAGUACGGAAAG", "nts_long": "///A/32,///A/33,///A/34,///A/35,///A/492,///A/493,///A/494,///A/495,///A/496,///A/497,///A/498,///A/499,///A/500,///A/501,///A/502,///A/503,///A/504,///A/505,///A/506,///A/507,///A/508,///A/515,///A/516,///A/517,///A/518,///A/519,///A/520", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/33,///A/34" }, { "index": 2, "num_nts": 15, "nts_short": "GAUAGUGAACCAGUA", "nts_long": "///A/493,///A/494,///A/495,///A/496,///A/497,///A/498,///A/499,///A/500,///A/501,///A/502,///A/503,///A/504,///A/505,///A/506,///A/507" }, { "index": 3, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///A/516,///A/517,///A/518,///A/519" } ] }, { "index": 13, "type": "4-way junction", "bridging_nts": [ 1, 1, 0, 0 ], "stem_indices": [ -33, 96, 97, -37 ], "summary": "[4] 1 1 0 0 [A.1490 A.1595 A.1492 A.1511 A.1513 A.1572 A.1573 A.1594] 1 3 2 1", "num_nts": 10, "nts_short": "AAGCGUGCGU", "nts_long": "///A/1490,///A/1491,///A/1492,///A/1511,///A/1512,///A/1513,///A/1572,///A/1573,///A/1594,///A/1595", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///A/1491" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///A/1512" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 4, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 14, "type": "4-way junction", "bridging_nts": [ 2, 2, 0, 1 ], "stem_indices": [ 9, -2, 12, 10 ], "summary": "[4] 2 2 0 1 [A.59 A.68 A.62 A.92 A.95 A.87 A.88 A.66] 3 1 3 2", "num_nts": 13, "nts_short": "GGACGCAAUGCAC", "nts_long": "///A/59,///A/60,///A/61,///A/62,///A/92,///A/93,///A/94,///A/95,///A/87,///A/88,///A/66,///A/67,///A/68", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/60,///A/61" }, { "index": 2, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/93,///A/94" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 4, "num_nts": 1, "nts_short": "A", "nts_long": "///A/67" } ] }, { "index": 15, "type": "4-way junction", "bridging_nts": [ 4, 0, 2, 0 ], "stem_indices": [ 76, 77, 78, 104 ], "summary": "[4] 4 0 2 0 [A.1310 A.2039 A.1315 A.1333 A.1334 A.1690 A.1693 A.2038] 2 6 4 4", "num_nts": 14, "nts_short": "CGAAAGCCGAUCGG", "nts_long": "///A/1310,///A/1311,///A/1312,///A/1313,///A/1314,///A/1315,///A/1333,///A/1334,///A/1690,///A/1691,///A/1692,///A/1693,///A/2038,///A/2039", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///A/1311,///A/1312,///A/1313,///A/1314" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/1691,///A/1692" }, { "index": 4, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 16, "type": "4-way junction", "bridging_nts": [ 2, 1, 3, 1 ], "stem_indices": [ 145, 146, 147, 151 ], "summary": "[4] 2 1 3 1 [A.2672 A.2800 A.2675 A.2703 A.2705 A.2760 A.2764 A.2798] 4 6 5 3", "num_nts": 15, "nts_short": "GAGCGACGGACGCCC", "nts_long": "///A/2672,///A/2673,///A/2674,///A/2675,///A/2703,///A/2704,///A/2705,///A/2760,///A/2761,///A/2762,///A/2763,///A/2764,///A/2798,///A/2799,///A/2800", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/2673,///A/2674" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///A/2704" }, { "index": 3, "num_nts": 3, "nts_short": "GAC", "nts_long": "///A/2761,///A/2762,///A/2763" }, { "index": 4, "num_nts": 1, "nts_short": "C", "nts_long": "///A/2799" } ] }, { "index": 17, "type": "4-way junction", "bridging_nts": [ 4, 4, 1, 2 ], "stem_indices": [ 20, 21, -8, 33 ], "summary": "[4] 4 4 1 2 [A.271 A.471 A.276 A.295 A.300 A.451 A.453 A.468] 3 4 1 5", "num_nts": 19, "nts_short": "CCAAACGGGUUGCCGCAAG", "nts_long": "///A/271,///A/272,///A/273,///A/274,///A/275,///A/276,///A/295,///A/296,///A/297,///A/298,///A/299,///A/300,///A/451,///A/452,///A/453,///A/468,///A/469,///A/470,///A/471", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "CAAA", "nts_long": "///A/272,///A/273,///A/274,///A/275" }, { "index": 2, "num_nts": 4, "nts_short": "GGUU", "nts_long": "///A/296,///A/297,///A/298,///A/299" }, { "index": 3, "num_nts": 1, "nts_short": "C", "nts_long": "///A/452" }, { "index": 4, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/469,///A/470" } ] }, { "index": 18, "type": "4-way junction", "bridging_nts": [ 2, 3, 2, 6 ], "stem_indices": [ 40, 41, 43, 44 ], "summary": "[4] 2 3 2 6 [A.645 A.703 A.648 A.670 A.674 A.681 A.684 A.696] 5 3 2 4", "num_nts": 21, "nts_short": "CAAGCGCAGCGAGCGCAUGAG", "nts_long": "///A/645,///A/646,///A/647,///A/648,///A/670,///A/671,///A/672,///A/673,///A/674,///A/681,///A/682,///A/683,///A/684,///A/696,///A/697,///A/698,///A/699,///A/700,///A/701,///A/702,///A/703", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/646,///A/647" }, { "index": 2, "num_nts": 3, "nts_short": "GCA", "nts_long": "///A/671,///A/672,///A/673" }, { "index": 3, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/682,///A/683" }, { "index": 4, "num_nts": 6, "nts_short": "GCAUGA", "nts_long": "///A/697,///A/698,///A/699,///A/700,///A/701,///A/702" } ] }, { "index": 19, "type": "5-way junction", "bridging_nts": [ 4, 2, 2, 0, 5 ], "stem_indices": [ 38, 39, 45, 53, -30 ], "summary": "[5] 4 2 2 0 5 [A.628 A.1296 A.633 A.715 A.718 A.856 A.859 A.1236 A.1237 A.1290] 6 7 2 6 1", "num_nts": 23, "nts_short": "CGAGUUAGACGUUCGCGAGAAUG", "nts_long": "///A/628,///A/629,///A/630,///A/631,///A/632,///A/633,///A/715,///A/716,///A/717,///A/718,///A/856,///A/857,///A/858,///A/859,///A/1236,///A/1237,///A/1290,///A/1291,///A/1292,///A/1293,///A/1294,///A/1295,///A/1296", "num_stems": 5, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAGU", "nts_long": "///A/629,///A/630,///A/631,///A/632" }, { "index": 2, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/716,///A/717" }, { "index": 3, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/857,///A/858" }, { "index": 4, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 5, "num_nts": 5, "nts_short": "AGAAU", "nts_long": "///A/1291,///A/1292,///A/1293,///A/1294,///A/1295" } ] }, { "index": 20, "type": "5-way junction", "bridging_nts": [ 6, 4, 0, 2, 2 ], "stem_indices": [ 7, 8, 13, 14, -4 ], "summary": "[5] 6 4 0 2 2 [A.47 A.180 A.54 A.115 A.120 A.129 A.130 A.149 A.152 A.177] 2 3 3 7 1", "num_nts": 24, "nts_short": "CGAUGAAGCGAAUGCAUAUCGAAG", "nts_long": "///A/47,///A/48,///A/49,///A/50,///A/51,///A/52,///A/53,///A/54,///A/115,///A/116,///A/117,///A/118,///A/119,///A/120,///A/129,///A/130,///A/149,///A/150,///A/151,///A/152,///A/177,///A/178,///A/179,///A/180", "num_stems": 5, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GAUGAA", "nts_long": "///A/48,///A/49,///A/50,///A/51,///A/52,///A/53" }, { "index": 2, "num_nts": 4, "nts_short": "GAAU", "nts_long": "///A/116,///A/117,///A/118,///A/119" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 4, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/150,///A/151" }, { "index": 5, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/178,///A/179" } ] }, { "index": 21, "type": "5-way junction", "bridging_nts": [ 7, 0, 0, 7, 1 ], "stem_indices": [ -40, 107, 108, -43, 110 ], "summary": "[5] 7 0 0 7 1 [A.1719 A.2019 A.1727 A.1751 A.1752 A.1780 A.1781 A.1785 A.1793 A.2017] 1 5 5 1 7", "num_nts": 25, "nts_short": "GCAAAAUGAUGCCGUGAAUAGGCAC", "nts_long": "///A/1719,///A/1720,///A/1721,///A/1722,///A/1723,///A/1724,///A/1725,///A/1726,///A/1727,///A/1751,///A/1752,///A/1780,///A/1781,///A/1785,///A/1786,///A/1787,///A/1788,///A/1789,///A/1790,///A/1791,///A/1792,///A/1793,///A/2017,///A/2018,///A/2019", "num_stems": 5, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "CAAAAUG", "nts_long": "///A/1720,///A/1721,///A/1722,///A/1723,///A/1724,///A/1725,///A/1726" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 4, "num_nts": 7, "nts_short": "UGAAUAG", "nts_long": "///A/1786,///A/1787,///A/1788,///A/1789,///A/1790,///A/1791,///A/1792" }, { "index": 5, "num_nts": 1, "nts_short": "A", "nts_long": "///A/2018" } ] }, { "index": 22, "type": "6-way junction", "bridging_nts": [ 1, 1, 0, 2, 1, 5 ], "stem_indices": [ -15, -16, 38, -31, -45, 118 ], "summary": "[6] 1 1 0 2 1 5 [A.606 A.2062 A.608 A.621 A.623 A.1301 A.1302 A.2046 A.2049 A.2063 A.2065 A.2056] 1 1 6 1 1 5", "num_nts": 22, "nts_short": "UGCGAAUAUAUAUGCGUGAAGA", "nts_long": "///A/606,///A/607,///A/608,///A/621,///A/622,///A/623,///A/1301,///A/1302,///A/2046,///A/2047,///A/2048,///A/2049,///A/2063,///A/2064,///A/2065,///A/2056,///A/2057,///A/2058,///A/2059,///A/2060,///A/2061,///A/2062", "num_stems": 6, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///A/607" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///A/622" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 4, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/2047,///A/2048" }, { "index": 5, "num_nts": 1, "nts_short": "G", "nts_long": "///A/2064" }, { "index": 6, "num_nts": 5, "nts_short": "UGAAG", "nts_long": "///A/2057,///A/2058,///A/2059,///A/2060,///A/2061" } ] }, { "index": 23, "type": "6-way junction", "bridging_nts": [ 0, 1, 5, 11, 3, 0 ], "stem_indices": [ 65, 66, -27, 68, 66, -26 ], "summary": "[6] 0 1 5 11 3 0 [A.1050 A.1197 A.1051 A.1184 A.1186 A.1070 A.1076 A.1170 A.1182 A.1053 A.1057 A.1196] 3 3 1 2 3 1", "is_repeated": true, "num_nts": 32, "nts_short": "UCGGCGGAAAAGCGAAAAUGUACCGCAAAGCA", "nts_long": "///A/1050,///A/1051,///A/1184,///A/1185,///A/1186,///A/1070,///A/1071,///A/1072,///A/1073,///A/1074,///A/1075,///A/1076,///A/1170,///A/1171,///A/1172,///A/1173,///A/1174,///A/1175,///A/1176,///A/1177,///A/1178,///A/1179,///A/1180,///A/1181,///A/1182,///A/1053,///A/1054,///A/1055,///A/1056,///A/1057,///A/1196,///A/1197", "num_stems": 6, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///A/1185" }, { "index": 3, "num_nts": 5, "nts_short": "GAAAA", "nts_long": "///A/1071,///A/1072,///A/1073,///A/1074,///A/1075" }, { "index": 4, "num_nts": 11, "nts_short": "GAAAAUGUACC", "nts_long": "///A/1171,///A/1172,///A/1173,///A/1174,///A/1175,///A/1176,///A/1177,///A/1178,///A/1179,///A/1180,///A/1181" }, { "index": 5, "num_nts": 3, "nts_short": "AAA", "nts_long": "///A/1054,///A/1055,///A/1056" }, { "index": 6, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 24, "type": "6-way junction", "bridging_nts": [ 0, 4, 9, 3, 3, 6 ], "stem_indices": [ 6, 7, -5, 17, 18, 20 ], "summary": "[6] 0 4 9 3 3 6 [A.45 A.480 A.46 A.181 A.186 A.217 A.227 A.234 A.238 A.265 A.269 A.473] 2 2 1 2 4 3", "num_nts": 37, "nts_short": "GCGCAGACGGAAGAGAAAGCGAUUAUCAGCUAAAUAC", "nts_long": "///A/45,///A/46,///A/181,///A/182,///A/183,///A/184,///A/185,///A/186,///A/217,///A/218,///A/219,///A/220,///A/221,///A/222,///A/223,///A/224,///A/225,///A/226,///A/227,///A/234,///A/235,///A/236,///A/237,///A/238,///A/265,///A/266,///A/267,///A/268,///A/269,///A/473,///A/474,///A/475,///A/476,///A/477,///A/478,///A/479,///A/480", "num_stems": 6, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 4, "nts_short": "CAGA", "nts_long": "///A/182,///A/183,///A/184,///A/185" }, { "index": 3, "num_nts": 9, "nts_short": "GAAGAGAAA", "nts_long": "///A/218,///A/219,///A/220,///A/221,///A/222,///A/223,///A/224,///A/225,///A/226" }, { "index": 4, "num_nts": 3, "nts_short": "GAU", "nts_long": "///A/235,///A/236,///A/237" }, { "index": 5, "num_nts": 3, "nts_short": "UCA", "nts_long": "///A/266,///A/267,///A/268" }, { "index": 6, "num_nts": 6, "nts_short": "UAAAUA", "nts_long": "///A/474,///A/475,///A/476,///A/477,///A/478,///A/479" } ] }, { "index": 25, "type": "7-way junction", "bridging_nts": [ 3, 0, 0, 5, 0, 1, 3 ], "stem_indices": [ 28, -9, 30, 31, 30, -10, 31 ], "summary": "[7] 3 0 0 5 0 1 3 [A.340 A.385 A.344 A.360 A.361 A.378 A.379 A.371 A.377 A.362 A.363 A.367 A.369 A.381] 3 1 2 3 2 1 3", "is_repeated": true, "num_nts": 26, "nts_short": "UGAAGCGCCGUAACAGCCGGAUGUAG", "nts_long": "///A/340,///A/341,///A/342,///A/343,///A/344,///A/360,///A/361,///A/378,///A/379,///A/371,///A/372,///A/373,///A/374,///A/375,///A/376,///A/377,///A/362,///A/363,///A/367,///A/368,///A/369,///A/381,///A/382,///A/383,///A/384,///A/385", "num_stems": 7, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/341,///A/342,///A/343" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 4, "num_nts": 5, "nts_short": "UAACA", "nts_long": "///A/372,///A/373,///A/374,///A/375,///A/376" }, { "index": 5, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 6, "num_nts": 1, "nts_short": "G", "nts_long": "///A/368" }, { "index": 7, "num_nts": 3, "nts_short": "GUA", "nts_long": "///A/382,///A/383,///A/384" } ] }, { "index": 26, "type": "7-way junction", "bridging_nts": [ 4, 0, 2, 4, 3, 0, 4 ], "stem_indices": [ 53, 54, 55, 60, 62, 63, 71 ], "summary": "[7] 4 0 2 4 3 0 4 [A.864 A.1231 A.869 A.882 A.883 A.989 A.992 A.1017 A.1022 A.1033 A.1037 A.1209 A.1210 A.1226] 6 4 2 7 3 4 7", "num_nts": 31, "nts_short": "CGAAAUAGUCAGCGAAAGCAGACGAUGGUAG", "nts_long": "///A/864,///A/865,///A/866,///A/867,///A/868,///A/869,///A/882,///A/883,///A/989,///A/990,///A/991,///A/992,///A/1017,///A/1018,///A/1019,///A/1020,///A/1021,///A/1022,///A/1033,///A/1034,///A/1035,///A/1036,///A/1037,///A/1209,///A/1210,///A/1226,///A/1227,///A/1228,///A/1229,///A/1230,///A/1231", "num_stems": 7, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///A/865,///A/866,///A/867,///A/868" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/990,///A/991" }, { "index": 4, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///A/1018,///A/1019,///A/1020,///A/1021" }, { "index": 5, "num_nts": 3, "nts_short": "AGA", "nts_long": "///A/1034,///A/1035,///A/1036" }, { "index": 6, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 7, "num_nts": 4, "nts_short": "GGUA", "nts_long": "///A/1227,///A/1228,///A/1229,///A/1230" } ] }, { "index": 27, "type": "9-way junction", "bridging_nts": [ 0, 4, 0, 0, 1, 3, 0, 0, 1 ], "stem_indices": [ -32, 81, 83, 89, 84, 85, 88, 83, 84 ], "summary": "[9] 0 4 0 0 1 3 0 0 1 [A.1352 A.1648 A.1353 A.1377 A.1382 A.1443 A.1444 A.1642 A.1643 A.1387 A.1389 A.1420 A.1424 A.1441 A.1442 A.1383 A.1384 A.1646] 1 6 2 5 4 2 5 2 4", "is_repeated": true, "num_nts": 27, "nts_short": "UCGGUUAGCCGCGACGACAAUAUCGUA", "nts_long": "///A/1352,///A/1353,///A/1377,///A/1378,///A/1379,///A/1380,///A/1381,///A/1382,///A/1443,///A/1444,///A/1642,///A/1643,///A/1387,///A/1388,///A/1389,///A/1420,///A/1421,///A/1422,///A/1423,///A/1424,///A/1441,///A/1442,///A/1383,///A/1384,///A/1646,///A/1647,///A/1648", "num_stems": 9, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 4, "nts_short": "GUUA", "nts_long": "///A/1378,///A/1379,///A/1380,///A/1381" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 4, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 5, "num_nts": 1, "nts_short": "A", "nts_long": "///A/1388" }, { "index": 6, "num_nts": 3, "nts_short": "ACA", "nts_long": "///A/1421,///A/1422,///A/1423" }, { "index": 7, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 8, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 9, "num_nts": 1, "nts_short": "U", "nts_long": "///A/1647" } ] } ], "num_ssSegments": 39, "ssSegments": [ { "index": 1, "num_nts": 6, "nts_short": "UAGAAA", "nts_long": "///A/9,///A/10,///A/11,///A/12,///A/13,///A/14" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///A/75" }, { "index": 3, "num_nts": 3, "nts_short": "AUU", "nts_long": "///A/110,///A/111,///A/112" }, { "index": 4, "num_nts": 1, "nts_short": "U", "nts_long": "///A/301" }, { "index": 5, "num_nts": 4, "nts_short": "AGUA", "nts_long": "///A/418,///A/419,///A/420,///A/421" }, { "index": 6, "num_nts": 4, "nts_short": "GAAU", "nts_long": "///A/447,///A/448,///A/449,///A/450" }, { "index": 7, "num_nts": 5, "nts_short": "ACAAG", "nts_long": "///A/572,///A/573,///A/574,///A/575,///A/576" }, { "index": 8, "num_nts": 1, "nts_short": "A", "nts_long": "///A/578" }, { "index": 9, "num_nts": 1, "nts_short": "G", "nts_long": "///A/605" }, { "index": 10, "is_broken": true, "num_nts": 8, "nts_short": "GACGAAUU", "nts_long": "///A/921,///A/922,///A/945,///A/946,///A/947,///A/948,///A/949,///A/950" }, { "index": 11, "num_nts": 5, "nts_short": "UUAGA", "nts_long": "///A/1090,///A/1091,///A/1092,///A/1093,///A/1094" }, { "index": 12, "is_broken": true, "num_nts": 8, "nts_short": "AACGUCGA", "nts_long": "///A/1096,///A/1097,///A/1098,///A/1153,///A/1154,///A/1155,///A/1156,///A/1157" }, { "index": 13, "num_nts": 1, "nts_short": "A", "nts_long": "///A/1802" }, { "index": 14, "num_nts": 1, "nts_short": "U", "nts_long": "///A/1804" }, { "index": 15, "num_nts": 3, "nts_short": "ACA", "nts_long": "///A/1818,///A/1819,///A/1820" }, { "index": 16, "num_nts": 1, "nts_short": "G", "nts_long": "///A/1857" }, { "index": 17, "is_broken": true, "num_nts": 12, "nts_short": "CGCCUGCCGGUG", "nts_long": "///A/1859,///A/1860,///A/1861,///A/1862,///A/1863,///A/1864,///A/1866,///A/1867,///A/1868,///A/1869,///A/1870,///A/1871" }, { "index": 18, "is_broken": true, "num_nts": 9, "nts_short": "GGAGCCGAA", "nts_long": "///A/1886,///A/1887,///A/1888,///A/1889,///A/1890,///A/1911,///A/1912,///A/1913,///A/1914" }, { "index": 19, "is_broken": true, "num_nts": 6, "nts_short": "UAACAA", "nts_long": "///A/1927,///A/1928,///A/1929,///A/2005,///A/2006,///A/2007" }, { "index": 20, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/2070,///A/2071" }, { "index": 21, "num_nts": 11, "nts_short": "AAAGACCCCGU", "nts_long": "///A/2087,///A/2088,///A/2089,///A/2090,///A/2091,///A/2092,///A/2093,///A/2094,///A/2095,///A/2096,///A/2097" }, { "index": 22, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/2104,///A/2105" }, { "index": 23, "num_nts": 1, "nts_short": "U", "nts_long": "///A/2273" }, { "index": 24, "num_nts": 14, "nts_short": "CGCCCAAAGGUUCC", "nts_long": "///A/2310,///A/2311,///A/2312,///A/2313,///A/2314,///A/2315,///A/2316,///A/2317,///A/2318,///A/2319,///A/2320,///A/2321,///A/2322,///A/2323" }, { "index": 25, "is_broken": true, "num_nts": 4, "nts_short": "GGUC", "nts_long": "///A/2332,///A/2333,///A/2341,///A/2342" }, { "index": 26, "num_nts": 9, "nts_short": "GGAGCUUGA", "nts_long": "///A/2367,///A/2368,///A/2369,///A/2370,///A/2371,///A/2372,///A/2373,///A/2374,///A/2375" }, { "index": 27, "num_nts": 32, "nts_short": "GGACGAAAGUCGGGCUUAGUGAUCCGGUGGUU", "nts_long": "///A/2400,///A/2401,///A/2402,///A/2403,///A/2404,///A/2405,///A/2406,///A/2407,///A/2408,///A/2409,///A/2410,///A/2411,///A/2412,///A/2413,///A/2414,///A/2415,///A/2416,///A/2417,///A/2418,///A/2419,///A/2420,///A/2421,///A/2422,///A/2423,///A/2424,///A/2425,///A/2426,///A/2427,///A/2428,///A/2429,///A/2430,///A/2431" }, { "index": 28, "num_nts": 20, "nts_short": "GCCAUCGCUCAACGGAUAAA", "nts_long": "///A/2444,///A/2445,///A/2446,///A/2447,///A/2448,///A/2449,///A/2450,///A/2451,///A/2452,///A/2453,///A/2454,///A/2455,///A/2456,///A/2457,///A/2458,///A/2459,///A/2460,///A/2461,///A/2462,///A/2463" }, { "index": 29, "is_broken": true, "num_nts": 3, "nts_short": "CAU", "nts_long": "///A/2472,///A/2488,///A/2489" }, { "index": 30, "is_broken": true, "num_nts": 8, "nts_short": "CCAACGGG", "nts_long": "///A/2495,///A/2496,///A/2497,///A/2498,///A/2512,///A/2513,///A/2514,///A/2515" }, { "index": 31, "is_broken": true, "num_nts": 13, "nts_short": "UUUGGCACGGCUC", "nts_long": "///A/2520,///A/2521,///A/2522,///A/2523,///A/2524,///A/2525,///A/2526,///A/2536,///A/2537,///A/2538,///A/2539,///A/2540,///A/2541" }, { "index": 32, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/2615,///A/2616" }, { "index": 33, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/2636,///A/2637" }, { "index": 34, "num_nts": 1, "nts_short": "C", "nts_long": "///A/2639" }, { "index": 35, "num_nts": 3, "nts_short": "GCA", "nts_long": "///A/2656,///A/2657,///A/2658" }, { "index": 36, "num_nts": 1, "nts_short": "C", "nts_long": "///A/2925" }, { "index": 37, "num_nts": 2, "nts_short": "UU", "nts_long": "///B/85,///B/86" }, { "index": 38, "num_nts": 1, "nts_short": "A", "nts_long": "///B/114" }, { "index": 39, "is_broken": true, "num_nts": 2, "nts_short": "gg", "nts_long": "///W/501,///W/502" } ], "num_kissingLoops": 4, "kissingLoops": [ { "index": 1, "stem_index": -35, "is_isoCanonPair": true, "hairpin_indices": [ 35, 57 ] }, { "index": 2, "stem_index": -11, "is_isoCanonPair": true, "hairpin_indices": [ 15, 52 ] }, { "index": 3, "stem_index": -2, "is_isoCanonPair": true, "hairpin_indices": [ 1, 3 ] }, { "index": 4, "stem_index": 10, "hairpin_indices": [ 1, 3 ] } ], "num_Aminors": 95, "Aminors": [ { "index": 1, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/14 vs ///A/2073,///A/2653", "A_nt1": { "desc": "///A/14 vs ///A/2073", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.30]" }, "A_nt2": { "desc": "///A/14 vs ///A/2653", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 2, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///A/73 vs ///A/58,///A/69", "A_nt1": { "desc": "///A/73 vs ///A/58", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.89],N3-N2(amino)[2.94]" }, "A_nt2": { "desc": "///A/73 vs ///A/69", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2(carbonyl)[2.88]" } }, { "index": 3, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///A/102 vs ///A/85,///A/97", "A_nt1": { "desc": "///A/102 vs ///A/85", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.00]" }, "A_nt2": { "desc": "///A/102 vs ///A/97", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 4, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///A/125 vs ///A/54,///A/115", "A_nt1": { "desc": "///A/125 vs ///A/54", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/125 vs ///A/115", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.92]" } }, { "index": 5, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///A/126 vs ///A/55,///A/114", "A_nt1": { "desc": "///A/126 vs ///A/55", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.75],N3-N2(amino)[3.29]" }, "A_nt2": { "desc": "///A/126 vs ///A/114", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.03]" } }, { "index": 6, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/140 vs ///A/1446,///A/1640", "A_nt1": { "desc": "///A/140 vs ///A/1446", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/140 vs ///A/1640", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[2.78]" } }, { "index": 7, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/161 vs ///A/2237,///A/2245", "A_nt1": { "desc": "///A/161 vs ///A/2237", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.68]" }, "A_nt2": { "desc": "///A/161 vs ///A/2245", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 8, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/162 vs ///A/2236,///A/2246", "A_nt1": { "desc": "///A/162 vs ///A/2236", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2(carbonyl)[3.02]" }, "A_nt2": { "desc": "///A/162 vs ///A/2246", "face_type": "+", "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-N2(amino)[3.57],N1-O2'(hydroxyl)[3.27],N3-N2(amino)[3.59]" } }, { "index": 9, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/183 vs ///A/45,///A/480", "A_nt1": { "desc": "///A/183 vs ///A/45", "face_type": "+", "hbonds_num": 3, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.18],N6(amino)-N3[2.94],N1-N2(amino)[2.86]" }, "A_nt2": { "desc": "///A/183 vs ///A/480", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 10, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///A/185 vs ///A/45,///A/480", "A_nt1": { "desc": "///A/185 vs ///A/45", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/185 vs ///A/480", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.76],N3-O2'(hydroxyl)[2.93]" } }, { "index": 11, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/226 vs ///A/454,///A/467", "A_nt1": { "desc": "///A/226 vs ///A/454", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/226 vs ///A/467", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "O3'-O2'(hydroxyl)[3.58]" } }, { "index": 12, "type": "X", "desc_short": "A vs A-U (WC)", "desc_long": "///A/229 vs ///A/456,///A/465", "A_nt1": { "desc": "///A/229 vs ///A/456", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/229 vs ///A/465", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.37]" } }, { "index": 13, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/230 vs ///A/457,///A/464", "A_nt1": { "desc": "///A/230 vs ///A/457", "face_type": "+", "hbonds_num": 3, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.09],N6(amino)-N3[2.97],N1-N2(amino)[2.81]" }, "A_nt2": { "desc": "///A/230 vs ///A/464", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 14, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/274 vs ///A/303,///A/415", "A_nt1": { "desc": "///A/274 vs ///A/303", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/274 vs ///A/415", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.81],N3-O2'(hydroxyl)[3.26]" } }, { "index": 15, "type": "X", "desc_short": "A vs A-U (WC)", "desc_long": "///A/325 vs ///A/318,///A/402", "A_nt1": { "desc": "///A/325 vs ///A/318", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/325 vs ///A/402", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.30]" } }, { "index": 16, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/326 vs ///A/319,///A/401", "A_nt1": { "desc": "///A/326 vs ///A/319", "face_type": "+", "hbonds_num": 3, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[2.55],N6(amino)-N3[3.11],N1-N2(amino)[2.68]" }, "A_nt2": { "desc": "///A/326 vs ///A/401", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 17, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/343 vs ///A/362,///A/377", "A_nt1": { "desc": "///A/343 vs ///A/362", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.62],O2'(hydroxyl)-O2(carbonyl)[2.81]" }, "A_nt2": { "desc": "///A/343 vs ///A/377", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 18, "type": "II", "desc_short": "A vs C-G (WC)", "desc_long": "///A/390 vs ///A/79,///A/106", "A_nt1": { "desc": "///A/390 vs ///A/79", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.97],N3-O2'(hydroxyl)[3.13]" }, "A_nt2": { "desc": "///A/390 vs ///A/106", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.48]" } }, { "index": 19, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/412 vs ///A/306,///A/410", "A_nt1": { "desc": "///A/412 vs ///A/306", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.80]" }, "A_nt2": { "desc": "///A/412 vs ///A/410", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 20, "type": "X", "desc_short": "A vs C-A (--)", "desc_long": "///A/438 vs ///A/430,///A/437", "A_nt1": { "desc": "///A/438 vs ///A/430", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.14]" }, "A_nt2": { "desc": "///A/438 vs ///A/437", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 21, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/479 vs ///A/186,///A/217", "A_nt1": { "desc": "///A/479 vs ///A/186", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.51]" }, "A_nt2": { "desc": "///A/479 vs ///A/217", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 22, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/490 vs ///A/1241,///A/1285", "A_nt1": { "desc": "///A/490 vs ///A/1241", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.08]" }, "A_nt2": { "desc": "///A/490 vs ///A/1285", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.14],N3-N2(amino)[3.22]" } }, { "index": 23, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///A/496 vs ///A/35,///A/492", "A_nt1": { "desc": "///A/496 vs ///A/35", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/496 vs ///A/492", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.19],N3-O2'(hydroxyl)[2.86]" } }, { "index": 24, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///A/513 vs ///A/729,///A/842", "A_nt1": { "desc": "///A/513 vs ///A/729", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/513 vs ///A/842", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.05]" } }, { "index": 25, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/530 vs ///A/531,///A/542", "A_nt1": { "desc": "///A/530 vs ///A/531", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "OP2-N4(amino)[3.10]" }, "A_nt2": { "desc": "///A/530 vs ///A/542", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 26, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/560 vs ///A/625,///A/1299", "A_nt1": { "desc": "///A/560 vs ///A/625", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.89]" }, "A_nt2": { "desc": "///A/560 vs ///A/1299", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 27, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/561 vs ///A/624,///A/1300", "A_nt1": { "desc": "///A/561 vs ///A/624", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.21]" }, "A_nt2": { "desc": "///A/561 vs ///A/1300", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 28, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/572 vs ///A/2072,///A/2654", "A_nt1": { "desc": "///A/572 vs ///A/2072", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.54],O2'(hydroxyl)-O2(carbonyl)[2.86]" }, "A_nt2": { "desc": "///A/572 vs ///A/2654", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.46]" } }, { "index": 29, "type": "X", "desc_short": "A vs A-U (WC)", "desc_long": "///A/578 vs ///A/2049,///A/2063", "A_nt1": { "desc": "///A/578 vs ///A/2049", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[3.43]" }, "A_nt2": { "desc": "///A/578 vs ///A/2063", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 30, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/630 vs ///A/718,///A/856", "A_nt1": { "desc": "///A/630 vs ///A/718", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2(carbonyl)[3.30]" }, "A_nt2": { "desc": "///A/630 vs ///A/856", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.41],N3-N2(amino)[3.30]" } }, { "index": 31, "type": "II", "desc_short": "A vs C-G (WC)", "desc_long": "///A/652 vs ///A/241,///A/262", "A_nt1": { "desc": "///A/652 vs ///A/241", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.93],N3-O2'(hydroxyl)[3.36]" }, "A_nt2": { "desc": "///A/652 vs ///A/262", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 32, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/653 vs ///A/240,///A/263", "A_nt1": { "desc": "///A/653 vs ///A/240", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.93]" }, "A_nt2": { "desc": "///A/653 vs ///A/263", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 33, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/659 vs ///A/39,///A/487", "A_nt1": { "desc": "///A/659 vs ///A/39", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.18]" }, "A_nt2": { "desc": "///A/659 vs ///A/487", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 34, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///A/723 vs ///A/2098,///A/2471", "A_nt1": { "desc": "///A/723 vs ///A/2098", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.44]" }, "A_nt2": { "desc": "///A/723 vs ///A/2471", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.46],O2'(hydroxyl)-O2(carbonyl)[3.07]" } }, { "index": 35, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/796 vs ///A/791,///A/800", "A_nt1": { "desc": "///A/796 vs ///A/791", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/796 vs ///A/800", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[2.87],N1-O2'(hydroxyl)[2.73]" } }, { "index": 36, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///A/828 vs ///A/1805,///A/1817", "A_nt1": { "desc": "///A/828 vs ///A/1805", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.01],N3-N2(amino)[3.16]" }, "A_nt2": { "desc": "///A/828 vs ///A/1817", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.60],O2'(hydroxyl)-O2(carbonyl)[3.14]" } }, { "index": 37, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/866 vs ///A/884,///A/988", "A_nt1": { "desc": "///A/866 vs ///A/884", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.48]" }, "A_nt2": { "desc": "///A/866 vs ///A/988", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 38, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/913 vs ///A/911,///A/959", "A_nt1": { "desc": "///A/913 vs ///A/911", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[2.54]" }, "A_nt2": { "desc": "///A/913 vs ///A/959", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 39, "type": "X", "desc_short": "A vs G-U (--)", "desc_long": "///A/913 vs ///A/911,///A/960", "A_nt1": { "desc": "///A/913 vs ///A/911", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[2.54]" }, "A_nt2": { "desc": "///A/913 vs ///A/960", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N1*O2(carbonyl)[2.96]" } }, { "index": 40, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///A/1027 vs ///A/2056,///A/2065", "A_nt1": { "desc": "///A/1027 vs ///A/2056", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.53]" }, "A_nt2": { "desc": "///A/1027 vs ///A/2065", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.28]" } }, { "index": 41, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/1029 vs ///A/992,///A/1017", "A_nt1": { "desc": "///A/1029 vs ///A/992", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/1029 vs ///A/1017", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[3.26]" } }, { "index": 42, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/1046 vs ///A/1022,///A/1033", "A_nt1": { "desc": "///A/1046 vs ///A/1022", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/1046 vs ///A/1033", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.68]" } }, { "index": 43, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///A/1047 vs ///A/1023,///A/1032", "A_nt1": { "desc": "///A/1047 vs ///A/1023", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.18],N3-N2(amino)[3.42]" }, "A_nt2": { "desc": "///A/1047 vs ///A/1032", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.47]" } }, { "index": 44, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/1055 vs ///A/1048,///A/1199", "A_nt1": { "desc": "///A/1055 vs ///A/1048", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/1055 vs ///A/1199", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.67]" } }, { "index": 45, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///A/1056 vs ///A/1049,///A/1198", "A_nt1": { "desc": "///A/1056 vs ///A/1049", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.74],N3-N2(amino)[3.13]" }, "A_nt2": { "desc": "///A/1056 vs ///A/1198", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.55],O2'(hydroxyl)-O2(carbonyl)[3.28]" } }, { "index": 46, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/1075 vs ///A/1076,///A/1170", "A_nt1": { "desc": "///A/1075 vs ///A/1076", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-OP1[2.69]" }, "A_nt2": { "desc": "///A/1075 vs ///A/1170", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 47, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/1174 vs ///A/2545,///A/2597", "A_nt1": { "desc": "///A/1174 vs ///A/2545", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.65]" }, "A_nt2": { "desc": "///A/1174 vs ///A/2597", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 48, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/1175 vs ///A/2544,///A/2598", "A_nt1": { "desc": "///A/1175 vs ///A/2544", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.51],O2'(hydroxyl)-O2(carbonyl)[3.21]" }, "A_nt2": { "desc": "///A/1175 vs ///A/2598", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.17],N1-O2'(hydroxyl)[2.68]" } }, { "index": 49, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/1254 vs ///A/30,///A/556", "A_nt1": { "desc": "///A/1254 vs ///A/30", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.19],N3-O2'(hydroxyl)[3.26]" }, "A_nt2": { "desc": "///A/1254 vs ///A/556", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 50, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/1260 vs ///A/588,///A/595", "A_nt1": { "desc": "///A/1260 vs ///A/588", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/1260 vs ///A/595", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.83]" } }, { "index": 51, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/1266 vs ///A/859,///A/1236", "A_nt1": { "desc": "///A/1266 vs ///A/859", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.45],O2'(hydroxyl)-O2(carbonyl)[3.30]" }, "A_nt2": { "desc": "///A/1266 vs ///A/1236", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 52, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/1293 vs ///A/608,///A/621", "A_nt1": { "desc": "///A/1293 vs ///A/608", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.15]" }, "A_nt2": { "desc": "///A/1293 vs ///A/621", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 53, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/1294 vs ///A/719,///A/855", "A_nt1": { "desc": "///A/1294 vs ///A/719", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/1294 vs ///A/855", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.89]" } }, { "index": 54, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/1314 vs ///A/1334,///A/1690", "A_nt1": { "desc": "///A/1314 vs ///A/1334", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.83]" }, "A_nt2": { "desc": "///A/1314 vs ///A/1690", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O3'-O2'(hydroxyl)[3.40]" } }, { "index": 55, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/1361 vs ///A/1358,///A/1372", "A_nt1": { "desc": "///A/1361 vs ///A/1358", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/1361 vs ///A/1372", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.30],N1-O2'(hydroxyl)[3.16]" } }, { "index": 56, "type": "X", "desc_short": "A vs G-C (--)", "desc_long": "///A/1361 vs ///A/1359,///A/1372", "A_nt1": { "desc": "///A/1361 vs ///A/1359", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/1361 vs ///A/1372", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.30],N1-O2'(hydroxyl)[3.16]" } }, { "index": 57, "type": "X", "desc_short": "A vs A-U (WC)", "desc_long": "///A/1392 vs ///A/740,///A/816", "A_nt1": { "desc": "///A/1392 vs ///A/740", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.77]" }, "A_nt2": { "desc": "///A/1392 vs ///A/816", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 58, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/1393 vs ///A/739,///A/817", "A_nt1": { "desc": "///A/1393 vs ///A/739", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.04],O2'(hydroxyl)-O2(carbonyl)[3.29]" }, "A_nt2": { "desc": "///A/1393 vs ///A/817", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.59]" } }, { "index": 59, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///A/1423 vs ///A/1382,///A/1443", "A_nt1": { "desc": "///A/1423 vs ///A/1382", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.10]" }, "A_nt2": { "desc": "///A/1423 vs ///A/1443", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.02],O2'(hydroxyl)-O2(carbonyl)[3.24]" } }, { "index": 60, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/1432 vs ///A/1353,///A/1377", "A_nt1": { "desc": "///A/1432 vs ///A/1353", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/1432 vs ///A/1377", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.91]" } }, { "index": 61, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/1461 vs ///A/1455,///A/1632", "A_nt1": { "desc": "///A/1461 vs ///A/1455", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.13]" }, "A_nt2": { "desc": "///A/1461 vs ///A/1632", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 62, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///A/1542 vs ///A/1467,///A/1625", "A_nt1": { "desc": "///A/1542 vs ///A/1467", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/1542 vs ///A/1625", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O3'[3.13],N3-O2'(hydroxyl)[2.74]" } }, { "index": 63, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/1592 vs ///A/1493,///A/1510", "A_nt1": { "desc": "///A/1592 vs ///A/1493", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.12],N3-O2'(hydroxyl)[2.32]" }, "A_nt2": { "desc": "///A/1592 vs ///A/1510", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 64, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///A/1593 vs ///A/1492,///A/1511", "A_nt1": { "desc": "///A/1593 vs ///A/1492", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.31]" }, "A_nt2": { "desc": "///A/1593 vs ///A/1511", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.45]" } }, { "index": 65, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/1617 vs ///A/1390,///A/1419", "A_nt1": { "desc": "///A/1617 vs ///A/1390", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/1617 vs ///A/1419", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.45]" } }, { "index": 66, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/1618 vs ///A/1390,///A/1419", "A_nt1": { "desc": "///A/1618 vs ///A/1390", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/1618 vs ///A/1419", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.02]" } }, { "index": 67, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///A/1677 vs ///A/747,///A/779", "A_nt1": { "desc": "///A/1677 vs ///A/747", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.41]" }, "A_nt2": { "desc": "///A/1677 vs ///A/779", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 68, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/1721 vs ///A/1719,///A/2019", "A_nt1": { "desc": "///A/1721 vs ///A/1719", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[3.52]" }, "A_nt2": { "desc": "///A/1721 vs ///A/2019", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 69, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/1722 vs ///A/1719,///A/2019", "A_nt1": { "desc": "///A/1722 vs ///A/1719", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.12]" }, "A_nt2": { "desc": "///A/1722 vs ///A/2019", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 70, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/1784 vs ///A/2723,///A/2744", "A_nt1": { "desc": "///A/1784 vs ///A/2723", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.54],N1-N2(amino)[3.52]" }, "A_nt2": { "desc": "///A/1784 vs ///A/2744", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 71, "type": "II", "desc_short": "A vs A-U (WC)", "desc_long": "///A/1789 vs ///A/1675,///A/1681", "A_nt1": { "desc": "///A/1789 vs ///A/1675", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/1789 vs ///A/1681", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.59],N3-O2'(hydroxyl)[3.39]" } }, { "index": 72, "type": "X", "desc_short": "A vs U-A (WC)", "desc_long": "///A/1831 vs ///A/1827,///A/1850", "A_nt1": { "desc": "///A/1831 vs ///A/1827", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.55]" }, "A_nt2": { "desc": "///A/1831 vs ///A/1850", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 73, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/1832 vs ///A/1826,///A/1851", "A_nt1": { "desc": "///A/1832 vs ///A/1826", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/1832 vs ///A/1851", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.64]" } }, { "index": 74, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/1838 vs ///A/1401,///A/1408", "A_nt1": { "desc": "///A/1838 vs ///A/1401", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/1838 vs ///A/1408", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.46]" } }, { "index": 75, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/1839 vs ///A/1401,///A/1408", "A_nt1": { "desc": "///A/1839 vs ///A/1401", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.09]" }, "A_nt2": { "desc": "///A/1839 vs ///A/1408", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.40]" } }, { "index": 76, "type": "X", "desc_short": "A vs G-U (Wobble)", "desc_long": "///A/1883 vs ///A/1884,///A/1916", "A_nt1": { "desc": "///A/1883 vs ///A/1884", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-OP1[3.08]" }, "A_nt2": { "desc": "///A/1883 vs ///A/1916", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 77, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/2176 vs ///A/2172,///A/2177", "A_nt1": { "desc": "///A/2176 vs ///A/2172", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/2176 vs ///A/2177", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[2.67]" } }, { "index": 78, "type": "I", "desc_short": "A vs G-U (Wobble)", "desc_long": "///A/2303 vs ///A/1000,///A/1009", "A_nt1": { "desc": "///A/2303 vs ///A/1000", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.55]" }, "A_nt2": { "desc": "///A/2303 vs ///A/1009", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 79, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/2560 vs ///A/2687,///A/2692", "A_nt1": { "desc": "///A/2560 vs ///A/2687", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.03],N3-O2'(hydroxyl)[2.95]" }, "A_nt2": { "desc": "///A/2560 vs ///A/2692", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.34]" } }, { "index": 80, "type": "II", "desc_short": "A vs C-G (WC)", "desc_long": "///A/2593 vs ///A/2550,///A/2573", "A_nt1": { "desc": "///A/2593 vs ///A/2550", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.12]" }, "A_nt2": { "desc": "///A/2593 vs ///A/2573", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 81, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/2594 vs ///A/2549,///A/2574", "A_nt1": { "desc": "///A/2594 vs ///A/2549", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.45]" }, "A_nt2": { "desc": "///A/2594 vs ///A/2574", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[2.88]" } }, { "index": 82, "type": "I", "desc_short": "A vs U-A (WC)", "desc_long": "///A/2627 vs ///A/2103,///A/2464", "A_nt1": { "desc": "///A/2627 vs ///A/2103", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O4'-O2'(hydroxyl)[2.64],O2'(hydroxyl)-O2(carbonyl)[2.33]" }, "A_nt2": { "desc": "///A/2627 vs ///A/2464", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.02],N3*N3[3.31]" } }, { "index": 83, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/2769 vs ///A/2552,///A/2569", "A_nt1": { "desc": "///A/2769 vs ///A/2552", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/2769 vs ///A/2569", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.53]" } }, { "index": 84, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///A/2770 vs ///A/2553,///A/2568", "A_nt1": { "desc": "///A/2770 vs ///A/2553", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/2770 vs ///A/2568", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.96]" } }, { "index": 85, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///A/2834 vs ///A/2659,///A/2817", "A_nt1": { "desc": "///A/2834 vs ///A/2659", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///A/2834 vs ///A/2817", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.57]" } }, { "index": 86, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///A/2835 vs ///A/2660,///A/2816", "A_nt1": { "desc": "///A/2835 vs ///A/2660", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.31]" }, "A_nt2": { "desc": "///A/2835 vs ///A/2816", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.49]" } }, { "index": 87, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///A/2848 vs ///A/2076,///A/2650", "A_nt1": { "desc": "///A/2848 vs ///A/2076", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.57],N1-O2'(hydroxyl)[3.10]" }, "A_nt2": { "desc": "///A/2848 vs ///A/2650", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 88, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/2885 vs ///A/1753,///A/1779", "A_nt1": { "desc": "///A/2885 vs ///A/1753", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.05]" }, "A_nt2": { "desc": "///A/2885 vs ///A/1779", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.07],N3-N2(amino)[3.07]" } }, { "index": 89, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///A/2908 vs ///A/2841,///A/2855", "A_nt1": { "desc": "///A/2908 vs ///A/2841", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.89],O2'(hydroxyl)-O2(carbonyl)[2.17]" }, "A_nt2": { "desc": "///A/2908 vs ///A/2855", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N2(amino)[3.36],N3-N2(amino)[3.51]" } }, { "index": 90, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///B/51 vs ///B/29,///B/49", "A_nt1": { "desc": "///B/51 vs ///B/29", "face_type": "-", "hbonds_num": 3, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[2.74],N6(amino)-O2(carbonyl)[2.01],N1*O3'[2.99]" }, "A_nt2": { "desc": "///B/51 vs ///B/49", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N6(amino)*N2(amino)[3.04]" } }, { "index": 91, "type": "X", "desc_short": "A vs A-U (WC)", "desc_long": "///B/55 vs ///B/27,///B/53", "A_nt1": { "desc": "///B/55 vs ///B/27", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///B/55 vs ///B/53", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N7-O2'(hydroxyl)[2.27],N6(amino)-O2(carbonyl)[2.61]" } }, { "index": 92, "type": "X", "desc_short": "A vs C-G (--)", "desc_long": "///B/55 vs ///B/28,///B/52", "A_nt1": { "desc": "///B/55 vs ///B/28", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.35],N1-O2'(hydroxyl)[2.76]" }, "A_nt2": { "desc": "///B/55 vs ///B/52", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 93, "type": "X", "desc_short": "A vs C-U (--)", "desc_long": "///B/55 vs ///B/28,///B/53", "A_nt1": { "desc": "///B/55 vs ///B/28", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.35],N1-O2'(hydroxyl)[2.76]" }, "A_nt2": { "desc": "///B/55 vs ///B/53", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N7-O2'(hydroxyl)[2.27],N6(amino)-O2(carbonyl)[2.61]" } }, { "index": 94, "type": "X", "desc_short": "A vs C-U (--)", "desc_long": "///B/56 vs ///B/26,///B/54", "A_nt1": { "desc": "///B/56 vs ///B/26", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///B/56 vs ///B/54", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "OP2*O3'[3.06],N6(amino)-O2(carbonyl)[2.83]" } }, { "index": 95, "type": "X", "desc_short": "A vs A-U (WC)", "desc_long": "///B/56 vs ///B/27,///B/53", "A_nt1": { "desc": "///B/56 vs ///B/27", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[3.12],N1-O2'(hydroxyl)[3.36]" }, "A_nt2": { "desc": "///B/56 vs ///B/53", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } } ], "num_riboseZippers": 28, "riboseZippers": [ { "index": 1, "num_nts": 4, "nts_short": "CCAA", "nts_long": "///A/114,///A/115,///A/125,///A/126" }, { "index": 2, "num_nts": 4, "nts_short": "AUCC", "nts_long": "///A/140,///A/141,///A/1446,///A/1447" }, { "index": 3, "num_nts": 4, "nts_short": "ACAC", "nts_long": "///A/185,///A/186,///A/479,///A/480" }, { "index": 4, "num_nts": 4, "nts_short": "AACC", "nts_long": "///A/193,///A/194,///A/725,///A/726" }, { "index": 5, "num_nts": 4, "nts_short": "AGAU", "nts_long": "///A/222,///A/223,///A/236,///A/237" }, { "index": 6, "num_nts": 4, "nts_short": "CCAA", "nts_long": "///A/240,///A/241,///A/652,///A/653" }, { "index": 7, "num_nts": 4, "nts_short": "AUAA", "nts_long": "///A/265,///A/266,///A/476,///A/477" }, { "index": 8, "num_nts": 4, "nts_short": "AACC", "nts_long": "///A/560,///A/561,///A/624,///A/625" }, { "index": 9, "num_nts": 4, "nts_short": "AACC", "nts_long": "///A/722,///A/723,///A/2471,///A/2472" }, { "index": 10, "num_nts": 4, "nts_short": "CAAA", "nts_long": "///A/739,///A/740,///A/1392,///A/1393" }, { "index": 11, "num_nts": 4, "nts_short": "CUAA", "nts_long": "///A/859,///A/860,///A/1265,///A/1266" }, { "index": 12, "num_nts": 4, "nts_short": "GACC", "nts_long": "///A/865,///A/866,///A/884,///A/885" }, { "index": 13, "num_nts": 4, "nts_short": "AGAG", "nts_long": "///A/908,///A/909,///B/76,///B/77" }, { "index": 14, "num_nts": 4, "nts_short": "AGAG", "nts_long": "///A/987,///A/988,///A/1230,///A/1231" }, { "index": 15, "num_nts": 4, "nts_short": "AACA", "nts_long": "///A/1026,///A/1027,///A/2065,///A/2066" }, { "index": 16, "num_nts": 4, "nts_short": "CCAA", "nts_long": "///A/1032,///A/1033,///A/1046,///A/1047" }, { "index": 17, "num_nts": 4, "nts_short": "CCAA", "nts_long": "///A/1389,///A/1390,///A/1619,///A/1620" }, { "index": 18, "num_nts": 4, "nts_short": "CCAA", "nts_long": "///A/1401,///A/1402,///A/1838,///A/1839" }, { "index": 19, "num_nts": 4, "nts_short": "CAGA", "nts_long": "///A/1455,///A/1456,///A/1460,///A/1461" }, { "index": 20, "num_nts": 4, "nts_short": "GCAA", "nts_long": "///A/1492,///A/1493,///A/1592,///A/1593" }, { "index": 21, "num_nts": 4, "nts_short": "AACU", "nts_long": "///A/1541,///A/1542,///A/1625,///A/1626" }, { "index": 22, "num_nts": 4, "nts_short": "AUUA", "nts_long": "///A/1581,///A/1582,///A/1582,///A/1583" }, { "index": 23, "num_nts": 4, "nts_short": "CUGA", "nts_long": "///A/1753,///A/1754,///A/2884,///A/2885" }, { "index": 24, "num_nts": 4, "nts_short": "CUGA", "nts_long": "///A/2102,///A/2103,///A/2626,///A/2627" }, { "index": 25, "num_nts": 4, "nts_short": "ACAA", "nts_long": "///A/2106,///A/2107,///A/2462,///A/2463" }, { "index": 26, "num_nts": 4, "nts_short": "GUUA", "nts_long": "///A/2139,///A/2140,///A/2147,///A/2148" }, { "index": 27, "num_nts": 4, "nts_short": "CCAA", "nts_long": "///A/2549,///A/2550,///A/2593,///A/2594" }, { "index": 28, "num_nts": 4, "nts_short": "CCAA", "nts_long": "///A/2816,///A/2817,///A/2834,///A/2835" } ], "num_Kturns": 5, "Kturns": [ { "index": 1, "type": "Normal k-turn", "iloop_index": 60, "bounding_stems": [ 90, 91 ], "Cstem_index": 90, "NCstem_index": 91, "Cstem_pair": "C-G (///A/1455,///A/1632) WC", "NCstem_pair": "G-C (///A/1462,///A/1629) WC", "GA_pair": "G-A (///A/1460,///A/1631) Sheared", "bending_angle": 44.026, "strand1": { "num_nts": 14, "nts_short": "CUCACCAUUUGAGC", "nts_long": "///A/1450,///A/1451,///A/1452,///A/1453,///A/1454,///A/1455,///A/1456,///A/1457,///A/1458,///A/1459,///A/1460,///A/1461,///A/1462,///A/1463" }, "strand2": { "num_nts": 10, "nts_short": "GCGAGGUGAG", "nts_long": "///A/1628,///A/1629,///A/1630,///A/1631,///A/1632,///A/1633,///A/1634,///A/1635,///A/1636,///A/1637" } }, { "index": 2, "type": "Normal k-turn", "iloop_index": 63, "bounding_stems": [ 12, 11 ], "Cstem_index": 12, "NCstem_index": 11, "Cstem_pair": "C-G (///A/97,///A/85) WC", "NCstem_pair": "C-G (///A/104,///A/81) WC", "GA_pair": "G-A (///A/101,///A/84) Sheared", "bending_angle": 36.746, "strand1": { "num_nts": 15, "nts_short": "AGCUUUGAUCCGGAG", "nts_long": "///A/95,///A/96,///A/97,///A/98,///A/99,///A/100,///A/101,///A/102,///A/103,///A/104,///A/105,///A/106,///A/107,///A/108,///A/109" }, "strand2": { "num_nts": 12, "nts_short": "CUUCGGGGAGCU", "nts_long": "///A/76,///A/77,///A/78,///A/79,///A/80,///A/81,///A/82,///A/83,///A/84,///A/85,///A/86,///A/87" } }, { "index": 3, "type": "Normal k-turn", "iloop_index": 65, "bounding_stems": [ 73, 74 ], "Cstem_index": 73, "NCstem_index": 74, "Cstem_pair": "C-G (///A/1248,///A/1278) WC", "NCstem_pair": "G-U (///A/1255,///A/1274) Wobble", "GA_pair": "G-A (///A/1252,///A/1277) Sheared", "bending_angle": 49.984, "strand1": { "num_nts": 13, "nts_short": "GCUGUGAAGCCAG", "nts_long": "///A/1247,///A/1248,///A/1249,///A/1250,///A/1251,///A/1252,///A/1253,///A/1254,///A/1255,///A/1256,///A/1257,///A/1258,///A/1259" }, "strand2": { "num_nts": 10, "nts_short": "CUGGUGGAGC", "nts_long": "///A/1270,///A/1271,///A/1272,///A/1273,///A/1274,///A/1275,///A/1276,///A/1277,///A/1278,///A/1279" } }, { "index": 4, "type": "Undecided case", "iloop_index": 57, "bounding_stems": [ 158, 159 ], "Cstem_index": 158, "NCstem_index": 159, "Cstem_pair": "U-G (///A/2872,///A/2894) Wobble", "NCstem_pair": "G-U (///A/2877,///A/2890) Wobble", "GA_pair": "G-A (///A/2873,///A/2893) Sheared", "bending_angle": 48.863, "strand1": { "num_nts": 12, "nts_short": "GGUGGAAGUGUG", "nts_long": "///A/2870,///A/2871,///A/2872,///A/2873,///A/2874,///A/2875,///A/2876,///A/2877,///A/2878,///A/2879,///A/2880,///A/2881" }, "strand2": { "num_nts": 11, "nts_short": "CACAUGGAGCU", "nts_long": "///A/2886,///A/2887,///A/2888,///A/2889,///A/2890,///A/2891,///A/2892,///A/2893,///A/2894,///A/2895,///A/2896" } }, { "index": 5, "type": "Undecided case", "iloop_index": 76, "bounding_stems": [ 114, 113 ], "Cstem_index": 114, "NCstem_index": 113, "Cstem_pair": "C-G (///A/1842,///A/1833) WC", "NCstem_pair": "A-U (///A/1850,///A/1827) WC", "GA_pair": "G-A (///A/1843,///A/1832) Sheared", "bending_angle": 70.335, "strand1": { "num_nts": 17, "nts_short": "GGCGAAGUAUAGGGGCU", "nts_long": "///A/1840,///A/1841,///A/1842,///A/1843,///A/1844,///A/1845,///A/1846,///A/1847,///A/1848,///A/1849,///A/1850,///A/1851,///A/1852,///A/1853,///A/1854,///A/1855,///A/1856" }, "strand2": { "num_nts": 15, "nts_short": "GGUCUCUGCGAAGCC", "nts_long": "///A/1821,///A/1822,///A/1823,///A/1824,///A/1825,///A/1826,///A/1827,///A/1828,///A/1829,///A/1830,///A/1831,///A/1832,///A/1833,///A/1834,///A/1835" } } ], "num_splayUnits": 251, "splayUnits": [ { "index": 1, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/45,///A/46" }, { "index": 2, "num_nts": 3, "nts_short": "AUG", "nts_long": "///A/49,///A/50,///A/51" }, { "index": 3, "num_nts": 5, "nts_short": "AUAUG", "nts_long": "///A/71,///A/72,///A/73,///A/74,///A/75" }, { "index": 4, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/87,///A/88" }, { "index": 5, "num_nts": 3, "nts_short": "UUG", "nts_long": "///A/99,///A/100,///A/101" }, { "index": 6, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/112,///A/113" }, { "index": 7, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/119,///A/120" }, { "index": 8, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/123,///A/124,///A/125" }, { "index": 9, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/126,///A/127" }, { "index": 10, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/149,///A/150" }, { "index": 11, "num_nts": 3, "nts_short": "GAG", "nts_long": "///A/175,///A/176,///A/177" }, { "index": 12, "num_nts": 3, "nts_short": "AGA", "nts_long": "///A/183,///A/184,///A/185" }, { "index": 13, "num_nts": 4, "nts_short": "AAAC", "nts_long": "///A/198,///A/199,///A/200,///A/201" }, { "index": 14, "num_nts": 3, "nts_short": "AUC", "nts_long": "///A/202,///A/203,///A/204" }, { "index": 15, "num_nts": 3, "nts_short": "AAG", "nts_long": "///A/225,///A/226,///A/227" }, { "index": 16, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/235,///A/236" }, { "index": 17, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/251,///A/252" }, { "index": 18, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/267,///A/268" }, { "index": 19, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/301,///A/302" }, { "index": 20, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/320,///A/321" }, { "index": 21, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/323,///A/324" }, { "index": 22, "num_nts": 4, "nts_short": "AGAG", "nts_long": "///A/343,///A/344,///A/345,///A/346" }, { "index": 23, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/351,///A/352" }, { "index": 24, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/355,///A/356" }, { "index": 25, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/364,///A/365" }, { "index": 26, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/367,///A/368" }, { "index": 27, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/372,///A/373" }, { "index": 28, "num_nts": 3, "nts_short": "CAG", "nts_long": "///A/375,///A/376,///A/377" }, { "index": 29, "num_nts": 2, "nts_short": "CC", "nts_long": "///A/378,///A/379" }, { "index": 30, "num_nts": 2, "nts_short": "CU", "nts_long": "///A/404,///A/405" }, { "index": 31, "num_nts": 3, "nts_short": "UGA", "nts_long": "///A/416,///A/417,///A/418" }, { "index": 32, "num_nts": 3, "nts_short": "CGU", "nts_long": "///A/432,///A/433,///A/434" }, { "index": 33, "num_nts": 3, "nts_short": "CCG", "nts_long": "///A/451,///A/452,///A/453" }, { "index": 34, "num_nts": 3, "nts_short": "GGA", "nts_long": "///A/457,///A/458,///A/459" }, { "index": 35, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/470,///A/471" }, { "index": 36, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/474,///A/475" }, { "index": 37, "num_nts": 3, "nts_short": "GAC", "nts_long": "///A/489,///A/490,///A/491" }, { "index": 38, "num_nts": 3, "nts_short": "AUA", "nts_long": "///A/494,///A/495,///A/496" }, { "index": 39, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/500,///A/501" }, { "index": 40, "num_nts": 3, "nts_short": "CCA", "nts_long": "///A/502,///A/503,///A/504" }, { "index": 41, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/519,///A/520" }, { "index": 42, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/521,///A/522" }, { "index": 43, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/529,///A/530" }, { "index": 44, "num_nts": 3, "nts_short": "AGA", "nts_long": "///A/549,///A/550,///A/551" }, { "index": 45, "num_nts": 4, "nts_short": "AUCC", "nts_long": "///A/553,///A/554,///A/555,///A/556" }, { "index": 46, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/572,///A/573" }, { "index": 47, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/576,///A/577" }, { "index": 48, "num_nts": 3, "nts_short": "UUA", "nts_long": "///A/590,///A/591,///A/592" }, { "index": 49, "num_nts": 3, "nts_short": "ACG", "nts_long": "///A/593,///A/594,///A/595" }, { "index": 50, "num_nts": 3, "nts_short": "GUG", "nts_long": "///A/605,///A/606,///A/607" }, { "index": 51, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/618,///A/619" }, { "index": 52, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/622,///A/623" }, { "index": 53, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/631,///A/632" }, { "index": 54, "num_nts": 4, "nts_short": "GAAG", "nts_long": "///A/657,///A/658,///A/659,///A/660" }, { "index": 55, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/672,///A/673" }, { "index": 56, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/688,///A/689" }, { "index": 57, "num_nts": 3, "nts_short": "AUA", "nts_long": "///A/690,///A/691,///A/692" }, { "index": 58, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/700,///A/701" }, { "index": 59, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/717,///A/718" }, { "index": 60, "num_nts": 3, "nts_short": "AUC", "nts_long": "///A/732,///A/733,///A/734" }, { "index": 61, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/745,///A/746" }, { "index": 62, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/761,///A/762" }, { "index": 63, "num_nts": 3, "nts_short": "GGC", "nts_long": "///A/775,///A/776,///A/777" }, { "index": 64, "num_nts": 3, "nts_short": "UUG", "nts_long": "///A/793,///A/794,///A/795" }, { "index": 65, "num_nts": 3, "nts_short": "AAA", "nts_long": "///A/797,///A/798,///A/799" }, { "index": 66, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/808,///A/809" }, { "index": 67, "num_nts": 3, "nts_short": "GAG", "nts_long": "///A/810,///A/811,///A/812" }, { "index": 68, "num_nts": 3, "nts_short": "GGG", "nts_long": "///A/822,///A/823,///A/824" }, { "index": 69, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/827,///A/828,///A/829" }, { "index": 70, "num_nts": 3, "nts_short": "AUG", "nts_long": "///A/830,///A/831,///A/832" }, { "index": 71, "num_nts": 4, "nts_short": "CAAU", "nts_long": "///A/834,///A/835,///A/836,///A/837" }, { "index": 72, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/838,///A/839" }, { "index": 73, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/840,///A/841" }, { "index": 74, "num_nts": 3, "nts_short": "AGA", "nts_long": "///A/847,///A/848,///A/849" }, { "index": 75, "num_nts": 2, "nts_short": "UC", "nts_long": "///A/858,///A/859" }, { "index": 76, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/868,///A/869" }, { "index": 77, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/873,///A/874" }, { "index": 78, "num_nts": 3, "nts_short": "AGG", "nts_long": "///A/876,///A/877,///A/878" }, { "index": 79, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/956,///A/957" }, { "index": 80, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/958,///A/959" }, { "index": 81, "num_nts": 3, "nts_short": "CAG", "nts_long": "///A/990,///A/991,///A/992" }, { "index": 82, "num_nts": 4, "nts_short": "GAUA", "nts_long": "///A/1002,///A/1003,///A/1004,///A/1005" }, { "index": 83, "num_nts": 3, "nts_short": "AGA", "nts_long": "///A/1006,///A/1007,///A/1008" }, { "index": 84, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/1025,///A/1026" }, { "index": 85, "num_nts": 2, "nts_short": "CA", "nts_long": "///A/1028,///A/1029" }, { "index": 86, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/1030,///A/1031" }, { "index": 87, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/1036,///A/1037" }, { "index": 88, "num_nts": 3, "nts_short": "CCA", "nts_long": "///A/1040,///A/1041,///A/1042" }, { "index": 89, "num_nts": 2, "nts_short": "UC", "nts_long": "///A/1050,///A/1051" }, { "index": 90, "num_nts": 3, "nts_short": "GUA", "nts_long": "///A/1057,///A/1058,///A/1059" }, { "index": 91, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1071,///A/1072" }, { "index": 92, "num_nts": 3, "nts_short": "AUG", "nts_long": "///A/1078,///A/1079,///A/1080" }, { "index": 93, "num_nts": 4, "nts_short": "UUAG", "nts_long": "///A/1090,///A/1091,///A/1092,///A/1093" }, { "index": 94, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/1172,///A/1173" }, { "index": 95, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/1175,///A/1176" }, { "index": 96, "num_nts": 3, "nts_short": "ACC", "nts_long": "///A/1179,///A/1180,///A/1181" }, { "index": 97, "num_nts": 3, "nts_short": "AAA", "nts_long": "///A/1188,///A/1189,///A/1190" }, { "index": 98, "num_nts": 3, "nts_short": "AAG", "nts_long": "///A/1201,///A/1202,///A/1203" }, { "index": 99, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/1219,///A/1220" }, { "index": 100, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/1226,///A/1227" }, { "index": 101, "num_nts": 3, "nts_short": "GUG", "nts_long": "///A/1250,///A/1251,///A/1252" }, { "index": 102, "num_nts": 3, "nts_short": "GAC", "nts_long": "///A/1259,///A/1260,///A/1261" }, { "index": 103, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/1263,///A/1264" }, { "index": 104, "num_nts": 3, "nts_short": "AGU", "nts_long": "///A/1287,///A/1288,///A/1289" }, { "index": 105, "num_nts": 3, "nts_short": "GAG", "nts_long": "///A/1290,///A/1291,///A/1292" }, { "index": 106, "num_nts": 4, "nts_short": "AAUG", "nts_long": "///A/1293,///A/1294,///A/1295,///A/1296" }, { "index": 107, "num_nts": 3, "nts_short": "CGA", "nts_long": "///A/1310,///A/1311,///A/1312" }, { "index": 108, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/1313,///A/1314" }, { "index": 109, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1322,///A/1323" }, { "index": 110, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/1325,///A/1326" }, { "index": 111, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1338,///A/1339" }, { "index": 112, "num_nts": 3, "nts_short": "AUG", "nts_long": "///A/1340,///A/1341,///A/1342" }, { "index": 113, "num_nts": 3, "nts_short": "GCU", "nts_long": "///A/1363,///A/1364,///A/1365" }, { "index": 114, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/1367,///A/1368" }, { "index": 115, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/1371,///A/1372" }, { "index": 116, "num_nts": 4, "nts_short": "UUAG", "nts_long": "///A/1379,///A/1380,///A/1381,///A/1382" }, { "index": 117, "num_nts": 2, "nts_short": "UC", "nts_long": "///A/1383,///A/1384" }, { "index": 118, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/1423,///A/1424" }, { "index": 119, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/1432,///A/1433" }, { "index": 120, "num_nts": 3, "nts_short": "AUU", "nts_long": "///A/1434,///A/1435,///A/1436" }, { "index": 121, "num_nts": 4, "nts_short": "UUUG", "nts_long": "///A/1457,///A/1458,///A/1459,///A/1460" }, { "index": 122, "num_nts": 3, "nts_short": "AUG", "nts_long": "///A/1465,///A/1466,///A/1467" }, { "index": 123, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/1474,///A/1475" }, { "index": 124, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/1499,///A/1500" }, { "index": 125, "num_nts": 3, "nts_short": "UAU", "nts_long": "///A/1505,///A/1506,///A/1507" }, { "index": 126, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/1512,///A/1513" }, { "index": 127, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/1528,///A/1529" }, { "index": 128, "num_nts": 3, "nts_short": "UAG", "nts_long": "///A/1535,///A/1536,///A/1537" }, { "index": 129, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/1538,///A/1539" }, { "index": 130, "num_nts": 3, "nts_short": "AUC", "nts_long": "///A/1542,///A/1543,///A/1544" }, { "index": 131, "num_nts": 3, "nts_short": "AUG", "nts_long": "///A/1569,///A/1570,///A/1571" }, { "index": 132, "num_nts": 3, "nts_short": "AUA", "nts_long": "///A/1583,///A/1584,///A/1585" }, { "index": 133, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/1594,///A/1595" }, { "index": 134, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/1602,///A/1603" }, { "index": 135, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/1614,///A/1615" }, { "index": 136, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1616,///A/1617" }, { "index": 137, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/1642,///A/1643" }, { "index": 138, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/1647,///A/1648" }, { "index": 139, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/1651,///A/1652" }, { "index": 140, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/1653,///A/1654" }, { "index": 141, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/1655,///A/1656" }, { "index": 142, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1658,///A/1659" }, { "index": 143, "num_nts": 5, "nts_short": "CACAG", "nts_long": "///A/1660,///A/1661,///A/1662,///A/1663,///A/1664" }, { "index": 144, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1671,///A/1672" }, { "index": 145, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1676,///A/1677" }, { "index": 146, "num_nts": 3, "nts_short": "GAA", "nts_long": "///A/1678,///A/1679,///A/1680" }, { "index": 147, "num_nts": 3, "nts_short": "AUC", "nts_long": "///A/1691,///A/1692,///A/1693" }, { "index": 148, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1698,///A/1699" }, { "index": 149, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/1718,///A/1719" }, { "index": 150, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1726,///A/1727" }, { "index": 151, "num_nts": 3, "nts_short": "UUC", "nts_long": "///A/1737,///A/1738,///A/1739" }, { "index": 152, "num_nts": 3, "nts_short": "AGA", "nts_long": "///A/1743,///A/1744,///A/1745" }, { "index": 153, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/1751,///A/1752" }, { "index": 154, "num_nts": 3, "nts_short": "GUU", "nts_long": "///A/1757,///A/1758,///A/1759" }, { "index": 155, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/1765,///A/1766" }, { "index": 156, "num_nts": 5, "nts_short": "AGUGA", "nts_long": "///A/1784,///A/1785,///A/1786,///A/1787,///A/1788" }, { "index": 157, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/1791,///A/1792" }, { "index": 158, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/1808,///A/1809" }, { "index": 159, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/1810,///A/1811" }, { "index": 160, "num_nts": 3, "nts_short": "AAA", "nts_long": "///A/1814,///A/1815,///A/1816" }, { "index": 161, "num_nts": 3, "nts_short": "CGA", "nts_long": "///A/1829,///A/1830,///A/1831" }, { "index": 162, "num_nts": 3, "nts_short": "AAG", "nts_long": "///A/1844,///A/1845,///A/1846" }, { "index": 163, "num_nts": 3, "nts_short": "AUA", "nts_long": "///A/1848,///A/1849,///A/1850" }, { "index": 164, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/1857,///A/1858" }, { "index": 165, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/1863,///A/1864" }, { "index": 166, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/1881,///A/1882" }, { "index": 167, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/1927,///A/1928" }, { "index": 168, "num_nts": 3, "nts_short": "GAU", "nts_long": "///A/2009,///A/2010,///A/2011" }, { "index": 169, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/2020,///A/2021" }, { "index": 170, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/2046,///A/2047" }, { "index": 171, "num_nts": 4, "nts_short": "AGUA", "nts_long": "///A/2049,///A/2050,///A/2051,///A/2052" }, { "index": 172, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/2058,///A/2059" }, { "index": 173, "num_nts": 3, "nts_short": "GAU", "nts_long": "///A/2061,///A/2062,///A/2063" }, { "index": 174, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/2064,///A/2065" }, { "index": 175, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/2071,///A/2072" }, { "index": 176, "num_nts": 3, "nts_short": "ACG", "nts_long": "///A/2083,///A/2084,///A/2085" }, { "index": 177, "num_nts": 3, "nts_short": "AAG", "nts_long": "///A/2088,///A/2089,///A/2090" }, { "index": 178, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/2091,///A/2092" }, { "index": 179, "num_nts": 3, "nts_short": "GUG", "nts_long": "///A/2096,///A/2097,///A/2098" }, { "index": 180, "num_nts": 3, "nts_short": "UUA", "nts_long": "///A/2104,///A/2105,///A/2106" }, { "index": 181, "num_nts": 5, "nts_short": "GUACA", "nts_long": "///A/2139,///A/2140,///A/2141,///A/2142,///A/2143" }, { "index": 182, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/2148,///A/2149" }, { "index": 183, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/2152,///A/2153" }, { "index": 184, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/2155,///A/2156" }, { "index": 185, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/2160,///A/2161" }, { "index": 186, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/2173,///A/2174" }, { "index": 187, "num_nts": 4, "nts_short": "GUGG", "nts_long": "///A/2195,///A/2196,///A/2197,///A/2198" }, { "index": 188, "num_nts": 3, "nts_short": "UAC", "nts_long": "///A/2201,///A/2202,///A/2203" }, { "index": 189, "num_nts": 2, "nts_short": "AA", "nts_long": "///A/2227,///A/2228" }, { "index": 190, "num_nts": 3, "nts_short": "CGC", "nts_long": "///A/2231,///A/2232,///A/2233" }, { "index": 191, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/2239,///A/2240" }, { "index": 192, "num_nts": 3, "nts_short": "AUC", "nts_long": "///A/2241,///A/2242,///A/2243" }, { "index": 193, "num_nts": 2, "nts_short": "UC", "nts_long": "///A/2291,///A/2292" }, { "index": 194, "num_nts": 3, "nts_short": "CUA", "nts_long": "///A/2293,///A/2294,///A/2295" }, { "index": 195, "num_nts": 3, "nts_short": "AAA", "nts_long": "///A/2296,///A/2297,///A/2298" }, { "index": 196, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/2301,///A/2302" }, { "index": 197, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/2304,///A/2305" }, { "index": 198, "num_nts": 4, "nts_short": "CGCC", "nts_long": "///A/2310,///A/2311,///A/2312,///A/2313" }, { "index": 199, "num_nts": 3, "nts_short": "AAA", "nts_long": "///A/2315,///A/2316,///A/2317" }, { "index": 200, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/2319,///A/2320" }, { "index": 201, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/2347,///A/2348" }, { "index": 202, "num_nts": 3, "nts_short": "UGU", "nts_long": "///A/2353,///A/2354,///A/2355" }, { "index": 203, "num_nts": 3, "nts_short": "ACA", "nts_long": "///A/2362,///A/2363,///A/2364" }, { "index": 204, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/2365,///A/2366" }, { "index": 205, "num_nts": 4, "nts_short": "UGAC", "nts_long": "///A/2373,///A/2374,///A/2375,///A/2376" }, { "index": 206, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/2386,///A/2387" }, { "index": 207, "num_nts": 5, "nts_short": "CGGGC", "nts_long": "///A/2410,///A/2411,///A/2412,///A/2413,///A/2414" }, { "index": 208, "num_nts": 2, "nts_short": "GU", "nts_long": "///A/2418,///A/2419" }, { "index": 209, "num_nts": 3, "nts_short": "UUC", "nts_long": "///A/2430,///A/2431,///A/2432" }, { "index": 210, "num_nts": 3, "nts_short": "GCA", "nts_long": "///A/2434,///A/2435,///A/2436" }, { "index": 211, "num_nts": 8, "nts_short": "GCUCAACG", "nts_long": "///A/2450,///A/2451,///A/2452,///A/2453,///A/2454,///A/2455,///A/2456,///A/2457" }, { "index": 212, "num_nts": 3, "nts_short": "GAU", "nts_long": "///A/2458,///A/2459,///A/2460" }, { "index": 213, "num_nts": 3, "nts_short": "UAC", "nts_long": "///A/2467,///A/2468,///A/2469" }, { "index": 214, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/2488,///A/2489" }, { "index": 215, "num_nts": 4, "nts_short": "UUUG", "nts_long": "///A/2520,///A/2521,///A/2522,///A/2523" }, { "index": 216, "num_nts": 3, "nts_short": "CAU", "nts_long": "///A/2546,///A/2547,///A/2548" }, { "index": 217, "num_nts": 4, "nts_short": "UGUA", "nts_long": "///A/2557,///A/2558,///A/2559,///A/2560" }, { "index": 218, "num_nts": 2, "nts_short": "UU", "nts_long": "///A/2575,///A/2576" }, { "index": 219, "num_nts": 2, "nts_short": "UA", "nts_long": "///A/2592,///A/2593" }, { "index": 220, "num_nts": 2, "nts_short": "AG", "nts_long": "///A/2595,///A/2596" }, { "index": 221, "num_nts": 3, "nts_short": "CAG", "nts_long": "///A/2630,///A/2631,///A/2632" }, { "index": 222, "num_nts": 3, "nts_short": "GUC", "nts_long": "///A/2637,///A/2638,///A/2639" }, { "index": 223, "num_nts": 3, "nts_short": "CUA", "nts_long": "///A/2641,///A/2642,///A/2643" }, { "index": 224, "num_nts": 3, "nts_short": "CAG", "nts_long": "///A/2657,///A/2658,///A/2659" }, { "index": 225, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/2674,///A/2675" }, { "index": 226, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/2688,///A/2689" }, { "index": 227, "num_nts": 4, "nts_short": "GUAC", "nts_long": "///A/2717,///A/2718,///A/2719,///A/2720" }, { "index": 228, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/2740,///A/2741" }, { "index": 229, "num_nts": 2, "nts_short": "CG", "nts_long": "///A/2742,///A/2743" }, { "index": 230, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/2761,///A/2762" }, { "index": 231, "num_nts": 3, "nts_short": "AGC", "nts_long": "///A/2779,///A/2780,///A/2781" }, { "index": 232, "num_nts": 3, "nts_short": "UCU", "nts_long": "///A/2783,///A/2784,///A/2785" }, { "index": 233, "num_nts": 7, "nts_short": "AGAUGAG", "nts_long": "///A/2805,///A/2806,///A/2807,///A/2808,///A/2809,///A/2810,///A/2811" }, { "index": 234, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/2819,///A/2820" }, { "index": 235, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/2824,///A/2825" }, { "index": 236, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/2847,///A/2848" }, { "index": 237, "num_nts": 4, "nts_short": "GUUG", "nts_long": "///A/2856,///A/2857,///A/2858,///A/2859" }, { "index": 238, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/2874,///A/2875" }, { "index": 239, "num_nts": 2, "nts_short": "GC", "nts_long": "///A/2882,///A/2883" }, { "index": 240, "num_nts": 2, "nts_short": "GG", "nts_long": "///A/2891,///A/2892" }, { "index": 241, "num_nts": 2, "nts_short": "UG", "nts_long": "///A/2896,///A/2897" }, { "index": 242, "num_nts": 2, "nts_short": "AC", "nts_long": "///A/2898,///A/2899" }, { "index": 243, "num_nts": 2, "nts_short": "AU", "nts_long": "///A/2908,///A/2909" }, { "index": 244, "num_nts": 2, "nts_short": "GA", "nts_long": "///A/2918,///A/2919" }, { "index": 245, "num_nts": 4, "nts_short": "CGAU", "nts_long": "///B/9,///B/10,///B/11,///B/12" }, { "index": 246, "num_nts": 2, "nts_short": "AG", "nts_long": "///B/13,///B/14" }, { "index": 247, "num_nts": 4, "nts_short": "AUAC", "nts_long": "///B/37,///B/38,///B/39,///B/40" }, { "index": 248, "num_nts": 3, "nts_short": "CGA", "nts_long": "///B/41,///B/42,///B/43" }, { "index": 249, "num_nts": 4, "nts_short": "CACG", "nts_long": "///B/45,///B/46,///B/47,///B/48" }, { "index": 250, "num_nts": 2, "nts_short": "GU", "nts_long": "///B/84,///B/85" }, { "index": 251, "num_nts": 2, "nts_short": "CG", "nts_long": "///B/106,///B/107" } ], "pseudoknot_order": 4, "pseudoknot_nts": [ { "index": 1, "symbols": "[]", "num_nts": 32, "nts_short": "CACAUGUGGGCGCCUUGCCCGGGGUACCAACG", "nts_long": "///A/62,///A/65,///A/66,///A/67,///A/74,///A/88,///A/89,///A/92,///A/300,///A/361,///A/362,///A/377,///A/378,///A/451,///A/463,///A/606,///A/776,///A/1051,///A/1052,///A/1053,///A/1182,///A/1183,///A/1184,///A/1382,///A/1383,///A/1442,///A/1443,///A/1803,///A/2062,///A/2436,///A/2655,///A/2806" }, { "index": 2, "symbols": "{}", "num_nts": 8, "nts_short": "CGUAAUCG", "nts_long": "///A/1095,///A/1502,///A/1738,///A/1858,///A/2049,///A/2063,///A/2732,///A/2780" }, { "index": 3, "symbols": "<>", "num_nts": 2, "nts_short": "UA", "nts_long": "///A/591,///A/1269" }, { "index": 4, "symbols": "Aa", "num_nts": 2, "nts_short": "AU", "nts_long": "///A/799,///A/2638" } ], "dbn": { "all_chains": { "num_nts": 2791, "num_chars": 2806, "bseq": "UUAAGUUAGAAAGGGCGCACGGUGGAUGCCUUGGCACUAGGAGCCGAUGAAGGACGGGACGAACACCGAUAUGCUUCGGGGAGCUGUAAGCAAGCUUUGAUCCGGAGAUUUCCGAAUGGGGAAACCCACCACUCGUAAUGGAGUGGUAUCCAUAUCUGAAUUCAUAGGAUAUGAGAAGGCAGACCCGGGGAACUGAAACAUCUAAGUACCCGGAGGAAGAGAAAGCAAAUGCGAUUCCCUGAGUAGCGGCGAGCGAAACGGGAUCAGCCCAAACCAAGAGGCUUGCCUCUUGGGGUUGUAGGACACUCUGUACGGAGUUACAAAGGAACGAGGUAGAUGAAGAGGUCUGGAAAGGCCCGCCAUAGGAGGUAACAGCCCUGUAGUCAAAACUUCGUUCUCUCCUGAGUGGAUCCUGAGUACGGCGGAACACGUGAAAUUCCGUCGGAAUCCGGGAGGACCAUCUCCCAAGGCUAAAUACUCCCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAGAGAUCCUGAAACCGUGUGCCUACAAGUAGUCAGAGCCCGUUAACGGGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUCUCGUGCAAGGUUAAGCAGAAGAUGCGGAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGCAUGAGUACGUGGUCGUAGACCCGAAACCAGGUGAUCUACCCAUGUCCAGGGUGAAGUUCAGGUAACACUGAAUGGAGGCCCGAACCCACGCACGUUGAAAAGUGCGGGGAUGAGGUGUGGGUAGGGGUGAAAUGCCAAUCGAACCUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCAAGGUAAGAGUCUUGGAGGUAGAGCACUGAUUGGA&CGAAUUCAGUCAAACUCCGAAUGCCAAUGACUUAUCCUUGGGAGUCAGACUGCGAGUGAUAAGAUCCGUAGUCGAAAGGGAAACAGCCCAGACCGCCAGCUAAGGUCCCAAAGUAUACGUUAAGUGGAAAAGGAUGUGGAGUUGCUUAGACAAC&GUCGAGUGACUCUGCGCCGAAAAUGUACCGGGGCUAAACGUAUCACCGAAGCUGCGGACUGUUCUUCGAACAGUGGUAGGAGAGCGUUCUAAGGGCUGUGAAGCCAGACCGGAAGGACUGGUGGAGCGCUUAGAAGUGAGAAUGCCGGUAUGAGUAGCGAAAGAGGGGUGAGAAUCCCCUCCACCGAAUGCCUAAGGUUUCCUGAGGAAGGCUCGUCCGCUCAGGGUUAGUCGGGACCUAAGCCGAGGCCGAAAGGCGUAGGCGAUGGACAACAGGUUGAUAUUCCUGUACCACCUCCUCACCAUUUGAGCAAUGGGGGGACGCAGGAGGAUAGGGUAAGCGCGGUAUUGGAUAUCCGCGUCCAAGCAGUUAGGCUGGGAAAUAGGCAAAUCCGUUUCCCAUAAGCCUGAGCUGUGAUGGCGAGCGAAAUAUAGUAGCGAAGUUCCUGAUUCCACACUGCCAAGAAAAGCCUCUAGCGAGGUGAGAGGUGCCCGUACCGCAAACCGACACAGGUAGGCGAGGAGAGAAUCCUAAGGUGAUCGAGAGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUGUUAGGGUGCAAGCCCGAGAGAGCCGCAGUGAAUAGGCCCAGGCGACUGUUUAGCAAAAACACAGGUCUCUGCGAAGCCGUAAGGCGAAGUAUAGGGGCUGACGCCUG&CCGGUGCUGGAAGGUUAAGAGGAGC&CGAAUUGAAGCCCCAGUAA&CAACGAUCUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUUAUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCGUGGAGCUUUACUGCAGCCUGAUAUUGAAUGUUGGUACAGCUUGUACAGGAUAGGUAGGAGCCUUGGAAACCGGAGCGCCAGCUUCGGUGGAGGCAUCGGUGGGAUACUACCCUGGCUGUAUUGACCUUCUAACCCGCCGCCCUUAUCGGGCGGGGAGACAGUGUCAGGUGGGCAGUU&CCUCCUAAAAGGUAACGGAGGCGCCCAAAGGUUCCCUCAGAAUGG&UCAUUCGCAGAGUGUAAAGGCACAAGGGAGCUUGACUGCGAGACCUACAAGUCGAGCAGGGACGAAAGUCGGGCUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCC&AUCUCCCCCAA&CGGGGAGGUUUGGCA&CGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGU&CAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGCGGGCGCAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACGCACCGCUGGUGUACCAGUUGUUCUGCCAAGGGCAUCGCUGGGUAGCUAUGUGCGGACGGGAUAAGUGCUGAAAGCAUCUAAGCAUGAAGCCCCCCUCAAGAUGAGAUUUCCCAUUCCGCAAGGAAGUAAGAUCCCUGAAAGAUGAUCAGGUUGAUAGGUCUGAGGUGGAAGUGUGGCGACACAUGGAGCUGACAGAUACUAAUCGAUCGAGGACUUAAC&UGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUCGGGGGUU&CCCCCUGUGAGAGUAGGACGCCGCCAA&g&g", "bseqUP": "UUAAGUUAGAAAGGGCGCACGGUGGAUGCCUUGGCACUAGGAGCCGAUGAAGGACGGGACGAACACCGAUAUGCUUCGGGGAGCUGUAAGCAAGCUUUGAUCCGGAGAUUUCCGAAUGGGGAAACCCACCACUCGUAAUGGAGUGGUAUCCAUAUCUGAAUUCAUAGGAUAUGAGAAGGCAGACCCGGGGAACUGAAACAUCUAAGUACCCGGAGGAAGAGAAAGCAAAUGCGAUUCCCUGAGUAGCGGCGAGCGAAACGGGAUCAGCCCAAACCAAGAGGCUUGCCUCUUGGGGUUGUAGGACACUCUGUACGGAGUUACAAAGGAACGAGGUAGAUGAAGAGGUCUGGAAAGGCCCGCCAUAGGAGGUAACAGCCCUGUAGUCAAAACUUCGUUCUCUCCUGAGUGGAUCCUGAGUACGGCGGAACACGUGAAAUUCCGUCGGAAUCCGGGAGGACCAUCUCCCAAGGCUAAAUACUCCCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAGAGAUCCUGAAACCGUGUGCCUACAAGUAGUCAGAGCCCGUUAACGGGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUCUCGUGCAAGGUUAAGCAGAAGAUGCGGAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGCAUGAGUACGUGGUCGUAGACCCGAAACCAGGUGAUCUACCCAUGUCCAGGGUGAAGUUCAGGUAACACUGAAUGGAGGCCCGAACCCACGCACGUUGAAAAGUGCGGGGAUGAGGUGUGGGUAGGGGUGAAAUGCCAAUCGAACCUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCAAGGUAAGAGUCUUGGAGGUAGAGCACUGAUUGGA&CGAAUUCAGUCAAACUCCGAAUGCCAAUGACUUAUCCUUGGGAGUCAGACUGCGAGUGAUAAGAUCCGUAGUCGAAAGGGAAACAGCCCAGACCGCCAGCUAAGGUCCCAAAGUAUACGUUAAGUGGAAAAGGAUGUGGAGUUGCUUAGACAAC&GUCGAGUGACUCUGCGCCGAAAAUGUACCGGGGCUAAACGUAUCACCGAAGCUGCGGACUGUUCUUCGAACAGUGGUAGGAGAGCGUUCUAAGGGCUGUGAAGCCAGACCGGAAGGACUGGUGGAGCGCUUAGAAGUGAGAAUGCCGGUAUGAGUAGCGAAAGAGGGGUGAGAAUCCCCUCCACCGAAUGCCUAAGGUUUCCUGAGGAAGGCUCGUCCGCUCAGGGUUAGUCGGGACCUAAGCCGAGGCCGAAAGGCGUAGGCGAUGGACAACAGGUUGAUAUUCCUGUACCACCUCCUCACCAUUUGAGCAAUGGGGGGACGCAGGAGGAUAGGGUAAGCGCGGUAUUGGAUAUCCGCGUCCAAGCAGUUAGGCUGGGAAAUAGGCAAAUCCGUUUCCCAUAAGCCUGAGCUGUGAUGGCGAGCGAAAUAUAGUAGCGAAGUUCCUGAUUCCACACUGCCAAGAAAAGCCUCUAGCGAGGUGAGAGGUGCCCGUACCGCAAACCGACACAGGUAGGCGAGGAGAGAAUCCUAAGGUGAUCGAGAGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUGUUAGGGUGCAAGCCCGAGAGAGCCGCAGUGAAUAGGCCCAGGCGACUGUUUAGCAAAAACACAGGUCUCUGCGAAGCCGUAAGGCGAAGUAUAGGGGCUGACGCCUG&CCGGUGCUGGAAGGUUAAGAGGAGC&CGAAUUGAAGCCCCAGUAA&CAACGAUCUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUUAUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCGUGGAGCUUUACUGCAGCCUGAUAUUGAAUGUUGGUACAGCUUGUACAGGAUAGGUAGGAGCCUUGGAAACCGGAGCGCCAGCUUCGGUGGAGGCAUCGGUGGGAUACUACCCUGGCUGUAUUGACCUUCUAACCCGCCGCCCUUAUCGGGCGGGGAGACAGUGUCAGGUGGGCAGUU&CCUCCUAAAAGGUAACGGAGGCGCCCAAAGGUUCCCUCAGAAUGG&UCAUUCGCAGAGUGUAAAGGCACAAGGGAGCUUGACUGCGAGACCUACAAGUCGAGCAGGGACGAAAGUCGGGCUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCC&AUCUCCCCCAA&CGGGGAGGUUUGGCA&CGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGU&CAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGCGGGCGCAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACGCACCGCUGGUGUACCAGUUGUUCUGCCAAGGGCAUCGCUGGGUAGCUAUGUGCGGACGGGAUAAGUGCUGAAAGCAUCUAAGCAUGAAGCCCCCCUCAAGAUGAGAUUUCCCAUUCCGCAAGGAAGUAAGAUCCCUGAAAGAUGAUCAGGUUGAUAGGUCUGAGGUGGAAGUGUGGCGACACAUGGAGCUGACAGAUACUAAUCGAUCGAGGACUUAAC&UGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUCGGGGGUU&CCCCCUGUGAGAGUAGGACGCCGCCAA&G&G", "sstr": "((((((......((((((((((.....(((..(((((((((((((......((((((..[..[[[)))...].((((((...(((]]..]..)))......))))))...)))....(((....)))(((((((......)))))))..(((((((...........)))))).)..))....((((((.....(......)......))))).).........((....))...((((......((.....)).....))))...((((...((((.(((....))).))))....[.(((((((((.....((((.......(((((((.((.(((...(.((((......)))))[[(...).(((.....]])))...)))...)).))))))))))).)))))..)))))....((((((((.........))))))))....].(((((.....[)))))..)))......)).))))))).))...............((....))....))......(..((((....))))............)).....)))))))))).....(.((((..((((..<...))))..)))).[.(.(........).).((((((....(((((((.(((((..(((...(((.....)))...)))...((....))..((((.....))))......))))).)))))))..((.(...((((((.....((((((((((.((((...((((((......))))))...)[)))...(((.(((((.......A))))))))..).))))))))).(.(((.....)))...)..))))))......).))..((((((....((((......))))(((((((((...(((((.........(.(...(((.((..&......)).)))..)..)..........)))))..))))))).))..(((((((.((......)).)))))))....(((......)))...((((.(((...((([[[...(.((((((.....(.....((..(.((....((.....{...&.....))....)).).))...........]]].)...))))))))))...)))))))(((((((...)))))))....))))))(.(((((...((......(((((.((....))>)))))...))...)))))..).....))))))(......((....((((((.......))))))((((....(((...((..(((((((...((.....)).))))))....[[((((.((...(((...(((....)))...)))...))...(((((........)))))]](((((.((((((......((...((((....((((..(((..(((.(.(((.(.....{....).))).((....(....((((.((((((..((.....)).))))))....)))).....)....))(..((...........))...)).)))...)))...))))(..).....))))..))..))))))))))))))).))).....((......))..))).((((.....))))..))))..((((....((((((((.((..(....(.......(((((....(.{..).....)))))(((((....((((....))))...)))))(...).......(((((((((.].((.........))...(((((((.....(((....))).......))))))).}......&......((.(...((...((.....&....))...))..)))...&...)).))))))).)..))).)))))))).)))))).....)).{..(((((.....]}.)))))..((((((((.(((.((...........((((((..(((((..((.(((((.(.(.((..((((((((.(.........(((....((..........(..((....))..).......))..............)))).))))))))..)).).)....((.((((((.....)))))))).....))))).))...))))).&((.................))..............(....(.(..&..)).....................).........((.(...((......))...).))................................((..].....))....................))))..)).&..(...(....&....)..).......&......(((((..((((((((........)))))..))).(((((.....))))).....)))))&..(((((((....))).))))..a.))..)))))))))))[...(((((((...((((..((((((......(....).....)))))).(((((...((((...(((((((((((.}..))))))..)))))...)))).)))))...(((....((((.....}.......))))....))).))))..]....)))))))(.((((....))))....(((((((((.......)))))....((((((((.(((....(((((....)))))...)))..))))).)))...))))...))))))).&(((((((....((((((((.....(.((.....(.....).....))...)....)))))).)).((........(.(((((..&))))).)........))..))))))).&.&.", "form": ".AAAAA......AAAAAAA.AA....AAAA...AA.AAAA.A.AA....A..AAAA..A..AAAAAA.......AAAA....A..A...AAA.AA......AAAA.AA..AA.....AA.....AA.AAAAAA.A.AA..AAAAAA.AAAAAAAA...........AAAAA......A....A.AAAA..AA.A..............AAAA....A.......A.....A....AAA.....A.AA...A.A..AAA.A.A.........B.A.AA..B.........AAA........AA.AAAAA.....AAA.....A..AAAAAA.AA..AA......AAAA......AAA..A.......AAA.....A.AA.A..A.....A..AAAAAA.AAA..AAA....AAA......AA..A.A..........A.AAA.........AAAA.......AAA....AA......A...AAA.AA..........B......A.A.....A..A..A...B.Z....AAA......A..AA...........A..AA.A.AA..AAA....Z.Z.AAA...AAA.......AAA...AAA...AAA.A........A..AAAAAA...AAAAAAAAAAAAAA......A.AA....A.AA....AAAA..AA.AA.AA..AAA......AA.AA.....AAAAAAAAAAAA....A....AAAAAAA.....AAAAA..AA..A.A....AAAAA........AAAA...B...A....AA...AAAA........AAAA.AA.....AA.AA.AA....AA......A........AAAAA...AA....AA..AAAAA..AA..A.......AAAA.A.AAAAA..A..AAAA.....A.....A.Z.AAA..A..-&.A....AA..A........A.....B..AA....A.AAA.A..A...AAAAAAA.A.......AAAAAAAAA.....AAA......AA....AAA..AAA....A.AA......A.AAA............AA..B.A.....A.........-&.....A..........A............AA.A....AAA.AA.AA....AAAAAAAAAAAA.....AAAAAA......AAA.AAAAAAA..........A.AAAA..AA....A.AAAAA....AA..AAAAA.........AAAAA.A....A.A.....AAAAA........AAAAAAAAA.....A...A.A....AAAAA...A.......A..AAAAAA......AAA..AA.A.AA....AAA....AA..A.AA....A....BAAAA........A.AB.AAAAAA..AAAAA.......A.....AA.....AAAA..AAA..AA....AA.............AAAAA.A..........AAA..AAAAA...A..AA..AAAAAAA......AAA...A....Z..A....A..A.........A.....AAAA....A....AAAA.....AAAA.AAABA.A...AAAAAAAAAA.AAA...A..............AA..AA..AAA.....AAA..A.AA.....A.......AA.AAA.....Z.......AA.A..AAAA...A.A..Z........AAA.AAAA...A.AAAA....AAA...AAAAA...A.........AA...AAA....AA.........AAA..AAAAA........AA....AA....A...AAAAAA........-&...A..A...B..A........A.-&.........A...BA...-&..AA..AA.AAAAAA......AAAAAA...AA.AA.....A.A....AAAAA......B.AAAAAA.AA.AAAA..A...A........A...AAAA.....BAA...A..A..A..AA..A..AAAAAAAAA........................................A..........................A.A.AAAAAAAAAAAAAA..A....A..AAAAA......AAA.A.A......A.AA.......A....-&..................AA........................-&..A......................................A.....A...........................................A...A.AAA.A.....................AA....AA-&.A........-&......B.......-&.AAAB...A....AA.A.A.....A...AAA.A...AA....A........AA.......A.A.-&A.AAA.AA.....AA..AAAA........AA.AAAA.AA.A...A.AAA.....AAA.B...AAAA....A.A......A..A.AA.AAAAAAA..A..AA....AAAA.AAAA..AA...AAAA...AAAA.........AAA...A.AAA..A.A.AA..A.......Z..A.A.....AA..AAA........A.AAAA.A.AA......AAAA....AAA.A..A..A....AAA.A.....AAAAAA.AAA....A.AAAAA....AAA....AA.....AA...AA....AAA.....AAAA..-&.AA.AA.....AA.AA.A......A...........................A..A.AAA..AA.A...AAAA.A..AAAA..-&AAAA......A.A..A...AA.A...-&-&-" }, "chain_A": { "num_nts": 2678, "num_chars": 2689, "bseq": "UUAAGUUAGAAAGGGCGCACGGUGGAUGCCUUGGCACUAGGAGCCGAUGAAGGACGGGACGAACACCGAUAUGCUUCGGGGAGCUGUAAGCAAGCUUUGAUCCGGAGAUUUCCGAAUGGGGAAACCCACCACUCGUAAUGGAGUGGUAUCCAUAUCUGAAUUCAUAGGAUAUGAGAAGGCAGACCCGGGGAACUGAAACAUCUAAGUACCCGGAGGAAGAGAAAGCAAAUGCGAUUCCCUGAGUAGCGGCGAGCGAAACGGGAUCAGCCCAAACCAAGAGGCUUGCCUCUUGGGGUUGUAGGACACUCUGUACGGAGUUACAAAGGAACGAGGUAGAUGAAGAGGUCUGGAAAGGCCCGCCAUAGGAGGUAACAGCCCUGUAGUCAAAACUUCGUUCUCUCCUGAGUGGAUCCUGAGUACGGCGGAACACGUGAAAUUCCGUCGGAAUCCGGGAGGACCAUCUCCCAAGGCUAAAUACUCCCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAGAGAUCCUGAAACCGUGUGCCUACAAGUAGUCAGAGCCCGUUAACGGGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUCUCGUGCAAGGUUAAGCAGAAGAUGCGGAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGCAUGAGUACGUGGUCGUAGACCCGAAACCAGGUGAUCUACCCAUGUCCAGGGUGAAGUUCAGGUAACACUGAAUGGAGGCCCGAACCCACGCACGUUGAAAAGUGCGGGGAUGAGGUGUGGGUAGGGGUGAAAUGCCAAUCGAACCUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCAAGGUAAGAGUCUUGGAGGUAGAGCACUGAUUGGA&CGAAUUCAGUCAAACUCCGAAUGCCAAUGACUUAUCCUUGGGAGUCAGACUGCGAGUGAUAAGAUCCGUAGUCGAAAGGGAAACAGCCCAGACCGCCAGCUAAGGUCCCAAAGUAUACGUUAAGUGGAAAAGGAUGUGGAGUUGCUUAGACAAC&GUCGAGUGACUCUGCGCCGAAAAUGUACCGGGGCUAAACGUAUCACCGAAGCUGCGGACUGUUCUUCGAACAGUGGUAGGAGAGCGUUCUAAGGGCUGUGAAGCCAGACCGGAAGGACUGGUGGAGCGCUUAGAAGUGAGAAUGCCGGUAUGAGUAGCGAAAGAGGGGUGAGAAUCCCCUCCACCGAAUGCCUAAGGUUUCCUGAGGAAGGCUCGUCCGCUCAGGGUUAGUCGGGACCUAAGCCGAGGCCGAAAGGCGUAGGCGAUGGACAACAGGUUGAUAUUCCUGUACCACCUCCUCACCAUUUGAGCAAUGGGGGGACGCAGGAGGAUAGGGUAAGCGCGGUAUUGGAUAUCCGCGUCCAAGCAGUUAGGCUGGGAAAUAGGCAAAUCCGUUUCCCAUAAGCCUGAGCUGUGAUGGCGAGCGAAAUAUAGUAGCGAAGUUCCUGAUUCCACACUGCCAAGAAAAGCCUCUAGCGAGGUGAGAGGUGCCCGUACCGCAAACCGACACAGGUAGGCGAGGAGAGAAUCCUAAGGUGAUCGAGAGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUGUUAGGGUGCAAGCCCGAGAGAGCCGCAGUGAAUAGGCCCAGGCGACUGUUUAGCAAAAACACAGGUCUCUGCGAAGCCGUAAGGCGAAGUAUAGGGGCUGACGCCUG&CCGGUGCUGGAAGGUUAAGAGGAGC&CGAAUUGAAGCCCCAGUAA&CAACGAUCUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUUAUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCGUGGAGCUUUACUGCAGCCUGAUAUUGAAUGUUGGUACAGCUUGUACAGGAUAGGUAGGAGCCUUGGAAACCGGAGCGCCAGCUUCGGUGGAGGCAUCGGUGGGAUACUACCCUGGCUGUAUUGACCUUCUAACCCGCCGCCCUUAUCGGGCGGGGAGACAGUGUCAGGUGGGCAGUU&CCUCCUAAAAGGUAACGGAGGCGCCCAAAGGUUCCCUCAGAAUGG&UCAUUCGCAGAGUGUAAAGGCACAAGGGAGCUUGACUGCGAGACCUACAAGUCGAGCAGGGACGAAAGUCGGGCUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCC&AUCUCCCCCAA&CGGGGAGGUUUGGCA&CGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGU&CAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGCGGGCGCAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACGCACCGCUGGUGUACCAGUUGUUCUGCCAAGGGCAUCGCUGGGUAGCUAUGUGCGGACGGGAUAAGUGCUGAAAGCAUCUAAGCAUGAAGCCCCCCUCAAGAUGAGAUUUCCCAUUCCGCAAGGAAGUAAGAUCCCUGAAAGAUGAUCAGGUUGAUAGGUCUGAGGUGGAAGUGUGGCGACACAUGGAGCUGACAGAUACUAAUCGAUCGAGGACUUAAC", "bseqUP": "UUAAGUUAGAAAGGGCGCACGGUGGAUGCCUUGGCACUAGGAGCCGAUGAAGGACGGGACGAACACCGAUAUGCUUCGGGGAGCUGUAAGCAAGCUUUGAUCCGGAGAUUUCCGAAUGGGGAAACCCACCACUCGUAAUGGAGUGGUAUCCAUAUCUGAAUUCAUAGGAUAUGAGAAGGCAGACCCGGGGAACUGAAACAUCUAAGUACCCGGAGGAAGAGAAAGCAAAUGCGAUUCCCUGAGUAGCGGCGAGCGAAACGGGAUCAGCCCAAACCAAGAGGCUUGCCUCUUGGGGUUGUAGGACACUCUGUACGGAGUUACAAAGGAACGAGGUAGAUGAAGAGGUCUGGAAAGGCCCGCCAUAGGAGGUAACAGCCCUGUAGUCAAAACUUCGUUCUCUCCUGAGUGGAUCCUGAGUACGGCGGAACACGUGAAAUUCCGUCGGAAUCCGGGAGGACCAUCUCCCAAGGCUAAAUACUCCCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAGAGAUCCUGAAACCGUGUGCCUACAAGUAGUCAGAGCCCGUUAACGGGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUCUCGUGCAAGGUUAAGCAGAAGAUGCGGAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGCAUGAGUACGUGGUCGUAGACCCGAAACCAGGUGAUCUACCCAUGUCCAGGGUGAAGUUCAGGUAACACUGAAUGGAGGCCCGAACCCACGCACGUUGAAAAGUGCGGGGAUGAGGUGUGGGUAGGGGUGAAAUGCCAAUCGAACCUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCAAGGUAAGAGUCUUGGAGGUAGAGCACUGAUUGGA&CGAAUUCAGUCAAACUCCGAAUGCCAAUGACUUAUCCUUGGGAGUCAGACUGCGAGUGAUAAGAUCCGUAGUCGAAAGGGAAACAGCCCAGACCGCCAGCUAAGGUCCCAAAGUAUACGUUAAGUGGAAAAGGAUGUGGAGUUGCUUAGACAAC&GUCGAGUGACUCUGCGCCGAAAAUGUACCGGGGCUAAACGUAUCACCGAAGCUGCGGACUGUUCUUCGAACAGUGGUAGGAGAGCGUUCUAAGGGCUGUGAAGCCAGACCGGAAGGACUGGUGGAGCGCUUAGAAGUGAGAAUGCCGGUAUGAGUAGCGAAAGAGGGGUGAGAAUCCCCUCCACCGAAUGCCUAAGGUUUCCUGAGGAAGGCUCGUCCGCUCAGGGUUAGUCGGGACCUAAGCCGAGGCCGAAAGGCGUAGGCGAUGGACAACAGGUUGAUAUUCCUGUACCACCUCCUCACCAUUUGAGCAAUGGGGGGACGCAGGAGGAUAGGGUAAGCGCGGUAUUGGAUAUCCGCGUCCAAGCAGUUAGGCUGGGAAAUAGGCAAAUCCGUUUCCCAUAAGCCUGAGCUGUGAUGGCGAGCGAAAUAUAGUAGCGAAGUUCCUGAUUCCACACUGCCAAGAAAAGCCUCUAGCGAGGUGAGAGGUGCCCGUACCGCAAACCGACACAGGUAGGCGAGGAGAGAAUCCUAAGGUGAUCGAGAGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUGUUAGGGUGCAAGCCCGAGAGAGCCGCAGUGAAUAGGCCCAGGCGACUGUUUAGCAAAAACACAGGUCUCUGCGAAGCCGUAAGGCGAAGUAUAGGGGCUGACGCCUG&CCGGUGCUGGAAGGUUAAGAGGAGC&CGAAUUGAAGCCCCAGUAA&CAACGAUCUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUUAUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCGUGGAGCUUUACUGCAGCCUGAUAUUGAAUGUUGGUACAGCUUGUACAGGAUAGGUAGGAGCCUUGGAAACCGGAGCGCCAGCUUCGGUGGAGGCAUCGGUGGGAUACUACCCUGGCUGUAUUGACCUUCUAACCCGCCGCCCUUAUCGGGCGGGGAGACAGUGUCAGGUGGGCAGUU&CCUCCUAAAAGGUAACGGAGGCGCCCAAAGGUUCCCUCAGAAUGG&UCAUUCGCAGAGUGUAAAGGCACAAGGGAGCUUGACUGCGAGACCUACAAGUCGAGCAGGGACGAAAGUCGGGCUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCC&AUCUCCCCCAA&CGGGGAGGUUUGGCA&CGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGU&CAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGCGGGCGCAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACGCACCGCUGGUGUACCAGUUGUUCUGCCAAGGGCAUCGCUGGGUAGCUAUGUGCGGACGGGAUAAGUGCUGAAAGCAUCUAAGCAUGAAGCCCCCCUCAAGAUGAGAUUUCCCAUUCCGCAAGGAAGUAAGAUCCCUGAAAGAUGAUCAGGUUGAUAGGUCUGAGGUGGAAGUGUGGCGACACAUGGAGCUGACAGAUACUAAUCGAUCGAGGACUUAAC", "sstr": "((((((......((((((((((.....(((..(((((((((((((......((((((..[..[[[)))...].((((((...(((]]..]..)))......))))))...)))....(((....)))(((((((......)))))))..(((((((...........)))))).)..))....((((((.....(......)......))))).).........((....))...((((......((.....)).....))))...((((...((((.(((....))).))))....[.(((((((((.....((((.......(((((((.((.(((...(.((((......)))))[[(...).(((.....]])))...)))...)).))))))))))).)))))..)))))....((((((((.........))))))))....].(((((.....[)))))..)))......)).))))))).))...............((....))....))......(..((((....))))............)).....)))))))))).....(.((((..((((..<...))))..)))).[.(.(........).).((((((....(((((((.(((((..(((...(((.....)))...)))...((....))..((((.....))))......))))).)))))))..((.(...((((((.....((((((((((.((((...((((((......))))))...)[)))...(((.(((((.......A))))))))..).))))))))).(.(((.....)))...)..))))))......).))..((((((....((((......))))(((((((((...(((((.........(.(...(((.((..&......)).)))..)..)..........)))))..))))))).))..(((((((.((......)).)))))))....(((......)))...((((.(((...((([[[...(.((((((.....(.....((..(.((....((.....{...&.....))....)).).))...........]]].)...))))))))))...)))))))(((((((...)))))))....))))))(.(((((...((......(((((.((....))>)))))...))...)))))..).....))))))(......((....((((((.......))))))((((....(((...((..(((((((...((.....)).))))))....[[((((.((...(((...(((....)))...)))...))...(((((........)))))]](((((.((((((......((...((((....((((..(((..(((.(.(((.(.....{....).))).((....(....((((.((((((..((.....)).))))))....)))).....)....))(..((...........))...)).)))...)))...))))(..).....))))..))..))))))))))))))).))).....((......))..))).((((.....))))..))))..((((....((((((((.((..(....(.......(((((....(.{..).....)))))(((((....((((....))))...)))))(...).......(((((((((.].((.........))...(((((((.....(((....))).......))))))).}......&......((.(...((...((.....&....))...))..)))...&...)).))))))).)..))).)))))))).)))))).....)).{..(((((.....]}.)))))..((((((((.(((.((...........((((((..(((((..((.(((((.(.(.((..((((((((.(.........(((....((..........(..((....))..).......))..............)))).))))))))..)).).)....((.((((((.....)))))))).....))))).))...))))).&((.................))..............(....(.(..&..)).....................).........((.(...((......))...).))................................((..].....))....................))))..)).&..(...(....&....)..).......&......(((((..((((((((........)))))..))).(((((.....))))).....)))))&..(((((((....))).))))..a.))..)))))))))))[...(((((((...((((..((((((......(....).....)))))).(((((...((((...(((((((((((.}..))))))..)))))...)))).)))))...(((....((((.....}.......))))....))).))))..]....)))))))(.((((....))))....(((((((((.......)))))....((((((((.(((....(((((....)))))...)))..))))).)))...))))...))))))).", "form": ".AAAAA......AAAAAAA.AA....AAAA...AA.AAAA.A.AA....A..AAAA..A..AAAAAA.......AAAA....A..A...AAA.AA......AAAA.AA..AA.....AA.....AA.AAAAAA.A.AA..AAAAAA.AAAAAAAA...........AAAAA......A....A.AAAA..AA.A..............AAAA....A.......A.....A....AAA.....A.AA...A.A..AAA.A.A.........B.A.AA..B.........AAA........AA.AAAAA.....AAA.....A..AAAAAA.AA..AA......AAAA......AAA..A.......AAA.....A.AA.A..A.....A..AAAAAA.AAA..AAA....AAA......AA..A.A..........A.AAA.........AAAA.......AAA....AA......A...AAA.AA..........B......A.A.....A..A..A...B.Z....AAA......A..AA...........A..AA.A.AA..AAA....Z.Z.AAA...AAA.......AAA...AAA...AAA.A........A..AAAAAA...AAAAAAAAAAAAAA......A.AA....A.AA....AAAA..AA.AA.AA..AAA......AA.AA.....AAAAAAAAAAAA....A....AAAAAAA.....AAAAA..AA..A.A....AAAAA........AAAA...B...A....AA...AAAA........AAAA.AA.....AA.AA.AA....AA......A........AAAAA...AA....AA..AAAAA..AA..A.......AAAA.A.AAAAA..A..AAAA.....A.....A.Z.AAA..A..-&.A....AA..A........A.....B..AA....A.AAA.A..A...AAAAAAA.A.......AAAAAAAAA.....AAA......AA....AAA..AAA....A.AA......A.AAA............AA..B.A.....A.........-&.....A..........A............AA.A....AAA.AA.AA....AAAAAAAAAAAA.....AAAAAA......AAA.AAAAAAA..........A.AAAA..AA....A.AAAAA....AA..AAAAA.........AAAAA.A....A.A.....AAAAA........AAAAAAAAA.....A...A.A....AAAAA...A.......A..AAAAAA......AAA..AA.A.AA....AAA....AA..A.AA....A....BAAAA........A.AB.AAAAAA..AAAAA.......A.....AA.....AAAA..AAA..AA....AA.............AAAAA.A..........AAA..AAAAA...A..AA..AAAAAAA......AAA...A....Z..A....A..A.........A.....AAAA....A....AAAA.....AAAA.AAABA.A...AAAAAAAAAA.AAA...A..............AA..AA..AAA.....AAA..A.AA.....A.......AA.AAA.....Z.......AA.A..AAAA...A.A..Z........AAA.AAAA...A.AAAA....AAA...AAAAA...A.........AA...AAA....AA.........AAA..AAAAA........AA....AA....A...AAAAAA........-&...A..A...B..A........A.-&.........A...BA...-&..AA..AA.AAAAAA......AAAAAA...AA.AA.....A.A....AAAAA......B.AAAAAA.AA.AAAA..A...A........A...AAAA.....BAA...A..A..A..AA..A..AAAAAAAAA........................................A..........................A.A.AAAAAAAAAAAAAA..A....A..AAAAA......AAA.A.A......A.AA.......A....-&..................AA........................-&..A......................................A.....A...........................................A...A.AAA.A.....................AA....AA-&.A........-&......B.......-&.AAAB...A....AA.A.A.....A...AAA.A...AA....A........AA.......A.A.-&A.AAA.AA.....AA..AAAA........AA.AAAA.AA.A...A.AAA.....AAA.B...AAAA....A.A......A..A.AA.AAAAAAA..A..AA....AAAA.AAAA..AA...AAAA...AAAA.........AAA...A.AAA..A.A.AA..A.......Z..A.A.....AA..AAA........A.AAAA.A.AA......AAAA....AAA.A..A..A....AAA.A.....AAAAAA.AAA....A.AAAAA....AAA....AA.....AA...AA....AAA.....AAAA..-" }, "chain_B": { "num_nts": 111, "num_chars": 112, "bseq": "UGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUCGGGGGUU&CCCCCUGUGAGAGUAGGACGCCGCCAA", "bseqUP": "UGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUCGGGGGUU&CCCCCUGUGAGAGUAGGACGCCGCCAA", "sstr": "(((((((....((((((((.....(.((.....(.....).....))...)....)))))).)).((........(.(((((..&))))).)........))..))))))).", "form": ".AA.AA.....AA.AA.A......A...........................A..A.AAA..AA.A...AAAA.A..AAAA..-&AAAA......A.A..A...AA.A...-" } }, "chains": { "chain_A": { "num_nts": 2678, "bseq": "UUAAGUUAGAAAGGGCGCACGGUGGAUGCCUUGGCACUAGGAGCCGAUGAAGGACGGGACGAACACCGAUAUGCUUCGGGGAGCUGUAAGCAAGCUUUGAUCCGGAGAUUUCCGAAUGGGGAAACCCACCACUCGUAAUGGAGUGGUAUCCAUAUCUGAAUUCAUAGGAUAUGAGAAGGCAGACCCGGGGAACUGAAACAUCUAAGUACCCGGAGGAAGAGAAAGCAAAUGCGAUUCCCUGAGUAGCGGCGAGCGAAACGGGAUCAGCCCAAACCAAGAGGCUUGCCUCUUGGGGUUGUAGGACACUCUGUACGGAGUUACAAAGGAACGAGGUAGAUGAAGAGGUCUGGAAAGGCCCGCCAUAGGAGGUAACAGCCCUGUAGUCAAAACUUCGUUCUCUCCUGAGUGGAUCCUGAGUACGGCGGAACACGUGAAAUUCCGUCGGAAUCCGGGAGGACCAUCUCCCAAGGCUAAAUACUCCCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAGAGAUCCUGAAACCGUGUGCCUACAAGUAGUCAGAGCCCGUUAACGGGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUCUCGUGCAAGGUUAAGCAGAAGAUGCGGAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGCAUGAGUACGUGGUCGUAGACCCGAAACCAGGUGAUCUACCCAUGUCCAGGGUGAAGUUCAGGUAACACUGAAUGGAGGCCCGAACCCACGCACGUUGAAAAGUGCGGGGAUGAGGUGUGGGUAGGGGUGAAAUGCCAAUCGAACCUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCAAGGUAAGAGUCUUGGAGGUAGAGCACUGAUUGGA&CGAAUUCAGUCAAACUCCGAAUGCCAAUGACUUAUCCUUGGGAGUCAGACUGCGAGUGAUAAGAUCCGUAGUCGAAAGGGAAACAGCCCAGACCGCCAGCUAAGGUCCCAAAGUAUACGUUAAGUGGAAAAGGAUGUGGAGUUGCUUAGACAAC&GUCGAGUGACUCUGCGCCGAAAAUGUACCGGGGCUAAACGUAUCACCGAAGCUGCGGACUGUUCUUCGAACAGUGGUAGGAGAGCGUUCUAAGGGCUGUGAAGCCAGACCGGAAGGACUGGUGGAGCGCUUAGAAGUGAGAAUGCCGGUAUGAGUAGCGAAAGAGGGGUGAGAAUCCCCUCCACCGAAUGCCUAAGGUUUCCUGAGGAAGGCUCGUCCGCUCAGGGUUAGUCGGGACCUAAGCCGAGGCCGAAAGGCGUAGGCGAUGGACAACAGGUUGAUAUUCCUGUACCACCUCCUCACCAUUUGAGCAAUGGGGGGACGCAGGAGGAUAGGGUAAGCGCGGUAUUGGAUAUCCGCGUCCAAGCAGUUAGGCUGGGAAAUAGGCAAAUCCGUUUCCCAUAAGCCUGAGCUGUGAUGGCGAGCGAAAUAUAGUAGCGAAGUUCCUGAUUCCACACUGCCAAGAAAAGCCUCUAGCGAGGUGAGAGGUGCCCGUACCGCAAACCGACACAGGUAGGCGAGGAGAGAAUCCUAAGGUGAUCGAGAGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUGUUAGGGUGCAAGCCCGAGAGAGCCGCAGUGAAUAGGCCCAGGCGACUGUUUAGCAAAAACACAGGUCUCUGCGAAGCCGUAAGGCGAAGUAUAGGGGCUGACGCCUG&CCGGUGCUGGAAGGUUAAGAGGAGC&CGAAUUGAAGCCCCAGUAA&CAACGAUCUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUUAUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCGUGGAGCUUUACUGCAGCCUGAUAUUGAAUGUUGGUACAGCUUGUACAGGAUAGGUAGGAGCCUUGGAAACCGGAGCGCCAGCUUCGGUGGAGGCAUCGGUGGGAUACUACCCUGGCUGUAUUGACCUUCUAACCCGCCGCCCUUAUCGGGCGGGGAGACAGUGUCAGGUGGGCAGUU&CCUCCUAAAAGGUAACGGAGGCGCCCAAAGGUUCCCUCAGAAUGG&UCAUUCGCAGAGUGUAAAGGCACAAGGGAGCUUGACUGCGAGACCUACAAGUCGAGCAGGGACGAAAGUCGGGCUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCC&AUCUCCCCCAA&CGGGGAGGUUUGGCA&CGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGU&CAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGCGGGCGCAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACGCACCGCUGGUGUACCAGUUGUUCUGCCAAGGGCAUCGCUGGGUAGCUAUGUGCGGACGGGAUAAGUGCUGAAAGCAUCUAAGCAUGAAGCCCCCCUCAAGAUGAGAUUUCCCAUUCCGCAAGGAAGUAAGAUCCCUGAAAGAUGAUCAGGUUGAUAGGUCUGAGGUGGAAGUGUGGCGACACAUGGAGCUGACAGAUACUAAUCGAUCGAGGACUUAAC", "sstr": "((((((......((((((((((.....(((..(((((((((((((......((((((..[..[[[)))...].((((((...(((]]..]..)))......))))))...)))....(((....)))(((((((......)))))))..(((((((...........)))))).)..))....((((((.....(......)......))))).).........((....))...((((......((.....)).....))))...((((...((((.(((....))).))))....[.(((((((((.....((((.......(((((((.((.(((...(.((((......)))))[[(...).(((.....]])))...)))...)).))))))))))).)))))..)))))....((((((((.........))))))))....].(((((.....[)))))..)))......)).))))))).))...............((....))....))......(..((((....))))............)).....)))))))))).....(.((((..((((..<...))))..)))).[.(.(........).).((((((....(((((((.(((((..(((...(((.....)))...)))...((....))..((((.....))))......))))).)))))))..((.(...((((((.....((((((((((.((((...((((((......))))))...)[)))...(((.(((((.......A))))))))..).))))))))).(.(((.....)))...)..))))))......).))..((((((....((((......))))(((((((((...(((((.........(.(...(((.((..&......)).)))..)..)..........)))))..))))))).))..(((((((.((......)).)))))))....(((......)))...((((.(((...((([[[...(.((((((.....(.....((..(.((....((.....{...&.....))....)).).))...........]]].)...))))))))))...)))))))(((((((...)))))))....))))))(.(((((...((......(((((.((....))>)))))...))...)))))..).....))))))(......((....((((((.......))))))((((....(((...((..(((((((...((.....)).))))))....[[((((.((...(((...(((....)))...)))...))...(((((........)))))]](((((.((((((......((...((((....((((..(((..(((.(.(((.(.....{....).))).((....(....((((.((((((..((.....)).))))))....)))).....)....))(..((...........))...)).)))...)))...))))(..).....))))..))..))))))))))))))).))).....((......))..))).((((.....))))..))))..((((....((((((((.((..(....(.......(((((....(.{..).....)))))(((((....((((....))))...)))))(...).......(((((((((.].((.........))...(((((((.....(((....))).......))))))).}......&......((.(...((...((.....&....))...))..)))...&...)).))))))).)..))).)))))))).)))))).....)).{..(((((.....]}.)))))..((((((((.(((.((...........((((((..(((((..((.(((((.(.(.((..((((((((.(.........(((....((..........(..((....))..).......))..............)))).))))))))..)).).)....((.((((((.....)))))))).....))))).))...))))).&((.................))..............(....(.(..&..)).....................).........((.(...((......))...).))................................((..].....))....................))))..)).&..(...(....&....)..).......&......(((((..((((((((........)))))..))).(((((.....))))).....)))))&..(((((((....))).))))..a.))..)))))))))))[...(((((((...((((..((((((......(....).....)))))).(((((...((((...(((((((((((.}..))))))..)))))...)))).)))))...(((....((((.....}.......))))....))).))))..]....)))))))(.((((....))))....(((((((((.......)))))....((((((((.(((....(((((....)))))...)))..))))).)))...))))...))))))).", "form": ".AAAAA......AAAAAAA.AA....AAAA...AA.AAAA.A.AA....A..AAAA..A..AAAAAA.......AAAA....A..A...AAA.AA......AAAA.AA..AA.....AA.....AA.AAAAAA.A.AA..AAAAAA.AAAAAAAA...........AAAAA......A....A.AAAA..AA.A..............AAAA....A.......A.....A....AAA.....A.AA...A.A..AAA.A.A.........B.A.AA..B.........AAA........AA.AAAAA.....AAA.....A..AAAAAA.AA..AA......AAAA......AAA..A.......AAA.....A.AA.A..A.....A..AAAAAA.AAA..AAA....AAA......AA..A.A..........A.AAA.........AAAA.......AAA....AA......A...AAA.AA..........B......A.A.....A..A..A...B.Z....AAA......A..AA...........A..AA.A.AA..AAA....Z.Z.AAA...AAA.......AAA...AAA...AAA.A........A..AAAAAA...AAAAAAAAAAAAAA......A.AA....A.AA....AAAA..AA.AA.AA..AAA......AA.AA.....AAAAAAAAAAAA....A....AAAAAAA.....AAAAA..AA..A.A....AAAAA........AAAA...B...A....AA...AAAA........AAAA.AA.....AA.AA.AA....AA......A........AAAAA...AA....AA..AAAAA..AA..A.......AAAA.A.AAAAA..A..AAAA.....A.....A.Z.AAA..A..-&.A....AA..A........A.....B..AA....A.AAA.A..A...AAAAAAA.A.......AAAAAAAAA.....AAA......AA....AAA..AAA....A.AA......A.AAA............AA..B.A.....A.........-&.....A..........A............AA.A....AAA.AA.AA....AAAAAAAAAAAA.....AAAAAA......AAA.AAAAAAA..........A.AAAA..AA....A.AAAAA....AA..AAAAA.........AAAAA.A....A.A.....AAAAA........AAAAAAAAA.....A...A.A....AAAAA...A.......A..AAAAAA......AAA..AA.A.AA....AAA....AA..A.AA....A....BAAAA........A.AB.AAAAAA..AAAAA.......A.....AA.....AAAA..AAA..AA....AA.............AAAAA.A..........AAA..AAAAA...A..AA..AAAAAAA......AAA...A....Z..A....A..A.........A.....AAAA....A....AAAA.....AAAA.AAABA.A...AAAAAAAAAA.AAA...A..............AA..AA..AAA.....AAA..A.AA.....A.......AA.AAA.....Z.......AA.A..AAAA...A.A..Z........AAA.AAAA...A.AAAA....AAA...AAAAA...A.........AA...AAA....AA.........AAA..AAAAA........AA....AA....A...AAAAAA........-&...A..A...B..A........A.-&.........A...BA...-&..AA..AA.AAAAAA......AAAAAA...AA.AA.....A.A....AAAAA......B.AAAAAA.AA.AAAA..A...A........A...AAAA.....BAA...A..A..A..AA..A..AAAAAAAAA........................................A..........................A.A.AAAAAAAAAAAAAA..A....A..AAAAA......AAA.A.A......A.AA.......A....-&..................AA........................-&..A......................................A.....A...........................................A...A.AAA.A.....................AA....AA-&.A........-&......B.......-&.AAAB...A....AA.A.A.....A...AAA.A...AA....A........AA.......A.A.-&A.AAA.AA.....AA..AAAA........AA.AAAA.AA.A...A.AAA.....AAA.B...AAAA....A.A......A..A.AA.AAAAAAA..A..AA....AAAA.AAAA..AA...AAAA...AAAA.........AAA...A.AAA..A.A.AA..A.......Z..A.A.....AA..AAA........A.AAAA.A.AA......AAAA....AAA.A..A..A....AAA.A.....AAAAAA.AAA....A.AAAAA....AAA....AA.....AA...AA....AAA.....AAAA..-", "helical_rise": 0.001, "helical_rise_std": 3.604, "helical_axis": [ -0.955, -0.029, -0.296 ], "point1": [ 148.506, 182.486, 173.062 ], "point2": [ 145.775, 182.402, 172.215 ], "num_chars": 8032, "suite": "U!!U1aA1aA1aG1aU1aU1aA1aG!!A!!A6gA!!G1aG1aG1aC1aG1aC1aA1aC1cG1aG!!U1aG1tG!!A1aU1aG1cC1aC1bU!!U!!G!!G1aC1aA1cC1aU1aA1cG1cG1LA1cG!!C1aC1cG!!A6pU!!G#aA!!A1aG!!G1aA1aC1cG!!G1bG2gA1aC!!G1aA1aA1aC1aA1aC1aC1bG!!A6pU2aA3bU!!G!!C1aU1aU1aC1cG1aG1aG1bG4bA0iG1aC!!U!!G1cU5zA!!A!!G1aC1cA1aA1cG1aC1cU!!U6jU!!G7aA1aU1cC1aC1aG1aG1aA1fG1aA1aU1aU3aU1aC1aC1aG!!A5qA!!U6dG1aG1aG1aG1zA2hA1LA5nC1aC1aC!!A1aC1aC1cA1aC1aU1aC1aG1aU1gA1aA1aU1aG1aG1aA!!G1aU1cG1aG1aU3dA1aU1aC1aC1aA1aU1cA!!U!!C!!U1LG3aA1cA!!U!!U1aC!!A1LU1aA1aG1aG1aA1aU1aA1aU!!G!!A1gG!!A1aA1LG1aG1bC2oA!!G2aA1aC1aC1cC1aG1aG1cG1aG1eA1LA1aC1aU1aG!!A!!A!!A!!C!!A!!U!!C1aU1aA!!A!!G0aU1aA1aC1aC1aC1aG1cG!!A1aG1tG!!A1aA1aG1aA1LG!!A!!A!!A!!G1cC!!A1tA!!A!!U!!G1cC1bG!!A1cU1aU1cC1aC1aC!!U1LG5zA!!G#aU1aA1aG1aC1bG!!G!!C!!G1aA1cG1aC1aG!!A1aA!!A1aC1aG1aG1cG1aA!!U!!C!!A!!G1cC1cC!!C1cA1LA!!A!!C1cC1cA1LA1LG1[A!!G4nG1aC5dU!!U!!G!!C!!C!!U!!C1LU1aU!!G1LG!!G!!G!!U!!U2[G0kU!!A1aG!!G1LA1aC1aA!!C1cU!!C!!U!!G1tU0bA!!C6gG1aG1aA1aG7aU!!U!!A1aC!!A1cA!!A!!G1cG1cA!!A!!C1aG1aA!!G1aG1aU7rA!!G1cA1LU1aG3aA1aA1oG!!A!!G1aG1cU1aC1aU1aG1gG1aA1bA!!A2aG1aG1aC1aC1cC!!G!!C1aC1aA7pU2[A!!G0kG1cA1aG1cG1aU5pA!!A!!C!!A!!G1aC!!C1aC1aU!!G1aU1aA1cG!!U!!C!!A1bA!!A1aA!!C1cU!!U1cC!!G1aU1aU1aC1aU1aC1aU1aC1cC!!U1cG1aA1cG1aU!!G!!G!!A1aU1aC1aC!!U!!G!!A!!G!!U1cA1cC1aG!!G1[C!!G1cG!!A!!A!!C!!A!!C!!G2[U6nG!!A!!A!!A1cU!!U1cC1aC1aG!!U!!C1cG1aG!!A!!A1bU!!C6pC!!G1aG1aG1aA1aG5rG!!A1aC!!C!!A!!U!!C1aU1aC1cC1bC!!A1LA5jG1aG1aC1aU7aA1aA1LA!!U1aA1aC1tU!!C1cC1mC!!U1aA!!G1aU1tG8dA5jC1aC1bG0bA6pU2aA1aG1cU1gG1aA7pA2[C2uC!!A4sG0aU1aA1aC1aC1cG!!U1aG1aA!!G1aG1aG1eA1aA1aA!!G1bG8dU1LG1gA1bA!!A0kA!!G#aC3aA1aC1aC1aC1aC1aG1gG1aA!!A1aG1cG1aG1cG1aA1cG1aU1aG1gA!!A1[A6pG!!A!!G0bA!!U!!C!!C1aU1cG3aA1aA1aA1aC1aC1cG1aU1aG!!U!!G1aC!!C!!U1LA3bC6nA1[A!!G!!U!!A!!G1aU1aC1aA1aG7aA1aG1aC1aC1cC1bG4bU4pU!!A4nA!!C!!G1aG1aG!!U!!G3aA1aU1aG1aG1aC1aG7pU!!G1aC1aC1aU1aU1cU1gU1aG7rU2gA!!G!!A!!A1aU1aG1aA7dA1aC1aC1aG1aG1aC1aG7aA3bG0aU1aU1aA1aC1cG1cA1aU1aC1aU1aC1aG1aU1aG1aC1cA!!A!!G4nG!!U!!U1aA1LA1aG1aC1cA1aG!!A!!A2aG1aA1aU1aG1bC!!G!!G0kA1aG1aC1aC1aG1aC!!A4aG1aC1aG1gA1aA1aA1aG1aC1cG!!A!!G1aU1aC!!U!!G!!A!!A!!U!!A1LG1aG1aG1aC1cG1aC1LA5zU!!G3bA4aG1aU1aA1cC1aG1aU1aG1aG1cU1aC1aG1aU1cA!!G1[A!!C!!C1aC1aG!!A1aA1cA1aC1aC1aA1aG1cG1aU1cG7rA!!U2aC1aU1aA1aC1aC1aC1aA1aU1cG1aU1aC1aC3aA1cG1aG1cG1LU1bG0aA1aA1aG1aU1aU1aC1cA1LG1aG!!U1gA!!A1cC!!A!!C1aU1aG1aA1aA!!U1aG!!G!!A!!G2hG!!C1aC1aC1aG1fA1aA!!C1aC!!C!!A!!C1aG1aC1aA1aC!!G1LU!!U!!G1gA1aA7dA!!A0aG1aU1aG1aC1cG1aG1aG1aG1aA!!U6nG!!A8dG1aG1aU1aG1aU1aG!!G1aG1aU1[A!!G!!G9aG1aG!!U1aG3dA!!A!!A!!U4nG1LC1aC3bA4bA!!U!!C!!G0bA!!A1aC!!C1aU1cG1aG!!A6pG8dA1aU1aA!!G!!C1eU1aG!!G1aU!!U!!C1aU1aC1aU1aC1aC1aG!!A1aA1aA!!U!!A1bG!!C!!U!!U6gU!!A!!G4aG1cG1aC1aU1aA1aG1aC1aC1aU1aC1aA1aA1cG1aG!!U1bA0iA1aG!!A1LG!!U1LC1[U!!U!!G7rG!!A1bG!!G!!U!!A1aG!!A!!G!!C!!A!!C!!U!!G!!A!!U!!U1aG1eG!!A..C1cG1aA!!A1LU!!U!!C!!A!!G!!U1aC1bA!!A!!A!!C1bU!!C1cC1aG!!A1aA!!U1cG1aC1eC!!A!!A!!U!!G1cA!!C1cU1cU!!A4nU1bC!!C1aU1aU1aG1aG1aG!!A1aG!!U1LC!!A!!G1aA1aC1aU1aG1aC1aG1aA1cG1aU!!G!!A!!U!!A1LA!!G!!A1aU!!C!!C1aG1aU1aA1aG1aU1aC1aG5zA!!A4gA1aG1aG1aG1aA5dA!!A1bC2hA!!G!!C1aC1aC1aA1tG0aA!!C1aC1cG1aC7pC!!A1aG1aC1cU1aA1aA1aG1cG1aU3dC1mC1cC!!A!!A1LA1oG!!U!!A1aU!!A!!C1aG1aU!!U!!A6nA!!G!!U1aG!!G!!A!!A!!A1aA!!G1aG1aA!!U!!G!!U!!G1LG!!A7aG1aU1LU7aG1aC1LU!!U6pA!!G!!A1mC!!A!!A!!C..G1aU!!C7aG!!A!!G1cU!!G!!A1aC7aU!!C!!U1mG!!C1cG1aC1aC1aG5zA!!A!!A4nA7pU2zG!!U!!A6pC!!C!!G1aG1aG!!G1aC!!U!!A4pA2aA1aC1aG1cU!!A1aU1aC1cA1aC1aC1aG!!A1zA2aG1aC1aU1aG1aC1cG!!G1aA1aC1aU1aG!!U!!U1LC!!U!!U!!C!!G!!A!!A!!C1aA1aG1aU3dG1aG&aU1aA1aG1aG1aA1aG1aA1cG1aC1cG1aU1aU1aC1aU1aA1aA1bG!!G!!G!!C!!U3bG!!U!!G0aA1aA1aG1aC1aC1cA1LG1zA2aC1aC1aG1gG1aA1aA1cG1aG1eA1aC1aU1aG1aG1aU1aG!!G4bA!!G1aC1aG1aC1aU1aU1cA1aG1aA1tA4pG!!U1bG2[A4pG!!A2aA5dU!!G1aC1aC1aG1aG1aU1eA1aU1aG!!A4sG#aU1aA1aG1aC!!G!!A2[A!!A!!G1aA1aG1aG1cG1aG1aU1aG1gA1aG1bA4pA!!U2aC1aC1aC1aC1aU1cC1aC1aA1aC1aC1aG!!A!!A!!U2aG1[C!!C!!U!!A1aA1aG1aG1bU4bU6nU1mC1aC1aU1aG1cA1aG1bG6nA1aA1aG!!G!!C2aU1aC1aG1zU2aC1aC1oG2aC1aU1cC!!A!!G1aG1aG1[U!!U2[A8dG1bU!!C1aG1aG1aG!!A5jC1aC!!U1aA1aA1aG1aC1aC1aG&aA1cG1aG1aC1cC1aG!!A1aA1aA1cG1aG1cC1LG&aU1aA1aG1cG1aC1aG!!A!!U1LG1aG1aA1aC7aA!!A4nC1aA1cG1aG1aU1LU1gG!!A!!U!!A!!U2[U2aC1aC!!U1cG!!U1eA1aC1aC1aA1aC1aC1tU!!C1cC1aU1cC1aA1aC1cC!!A!!U0aU!!U!!G&aA1aG1aC1cA!!A2zU2aG1aG1aG1aG1aG1aG!!A!!C2aG1aC1aA1aG1aG1eA1cG1aG1aA1aU1aA1cG1cG1cG1cU1aA1cA1aG1aC1cG!!C!!G!!G!!U!!A!!U!!U1cG!!G!!A!!U!!A!!U1aC1aC1aG1aC1aG!!U1aC!!C1cA1cA1aG!!C!!A!!G1aU1eU!!A1aG!!G1aC!!U!!G1cG1aG1cA!!A1cA!!U!!A!!G1aG!!C!!A1aA1aA1zU2aC1cC1aG1aU1aU1aU!!C1aC1aC!!A!!U0bA!!A1aG1aC1aC1cU!!G1fA!!G1aC1aU1aG!!U1aG5zA6dU!!G!!G!!C1aG7aA1aG1cC!!G1eA1LA1bA!!U!!A!!U6gA1cG&aU1cA1aG1aC1aG7aA1LA1LG5nU!!U1aC1aC1aU1aG1eA1zU2aU1aC1aC5zA!!C4gA1aC1aU1aG1aC1bC!!A!!A0aG!!A1aA1aA1aA1aG1aC1aC!!U1aC!!U1aA1aG1cC1LG!!A!!G1cG!!U1aG1cA1LG1aA1aG1cG1aU1aG3aC1aC1aC1aG1bU2aA1aC1aC!!G!!C!!A!!A!!A!!C!!C1cG5dA!!C!!A2[C2uA2aG1aG1aU!!A1cG1aG1cC!!G3aA1aG1aG1aA1aG1gA1aG1zA2aA1aU1aC1aC1cU1aA1aA1aG1aG1aU1aG!!A!!U!!C1cG1cA!!G!!A1bG0kA1aA1aC1aU1aC1aU1cC1aG1cU1aU&aA1aA1cG!!G1tA6gA1aC1aU1gC1aG!!G4gC1aA!!A1aA1aA!!U1LG!!A!!C1aC1cC1aC1aG!!U3aA1aA1aC1aU1zU2[C6nG1cG1aG!!A6pG!!A1aA!!G1cG1aG1aG1tU2aG1aC1aU1aC1aU!!G6pU!!U1aA1LG1cG1aG1aU1aG1gC1cA1LA1aG1aC1cC1aC!!G!!A!!G1cA!!G!!A!!G!!C!!C!!G!!C!!A!!G3dU5rG2aA!!A!!U!!A!!G!!G1aC1aC1cC1eA!!G1aG1aC1aG!!A1aC1cU1aG1aU1aU1aU!!A!!G!!C2aA1[A!!A1zA2aA1aC1aA1LC1LA1aG1aG1aU1aC1aU1aC1aU7rG!!C!!G!!A!!A1cG!!C1aC1cG1gU1LA1aA1aG1aG1aC1aG5zA!!A9aG1bU!!A6pU2aA!!G1aG1aG1aG1aC1aU1tG!!A1cC1cG1aC7aC1aU!!G..C!!C0kG1aG1aU!!G!!C1aU!!G2gG1tA4nA!!G1aG1aU!!U!!A4aA!!G!!A1cG!!G7aA1LG!!C..C1tG!!A1bA!!U!!U!!G!!A1cA1LG1cC!!C!!C!!C1cA1aG!!U!!A!!A..C1cA1aA1aC1bG!!A!!U1aC1aU1cG1cG1aG1aC1aA1aC1cU7pG0kU!!C!!U5zC!!A1aA1cC1aG1aA!!G1aA1cG1aA1aC1aU1aC1aG1aG1aU1aG1fA1aA1aA1aU1aU3dA1aU!!A!!G2[U!!A1aC1aC1aU1cG1aU1aG1oA!!A2zG!!A4pU!!G2aC1aA1aG1aG1aU1aU1aA!!C1aC1aC1cG1aC1aG1cA1aC1bA4gG1cG!!A9aC!!G!!G1aA!!A!!A!!G!!A!!C!!C1aC1aC!!G!!U9aG1aG1aA1aG1aC1LU1LU!!U7dA!!C&aU!!G!!C!!A1aG1aC1cC!!U!!G1cA1aU1mA1cU!!U!!G1aA!!A1aU1LG1aU!!U!!G!!G1cU1LA!!C1cA!!G1aC1aU1cU!!G!!U!!A!!C!!A!!G!!G1aA1zU!!A!!G!!G!!U!!A!!G!!G!!A!!G!!C!!C!!U!!U!!G!!G!!A1mA!!A!!C!!C1eG!!G!!A!!G!!C1aG!!C!!C!!A1aG1cC1aU!!U!!C!!G!!G!!U!!G!!G!!A!!G!!G1LC1tA!!U!!C!!G!!G!!U!!G!!G!!G2aA!!U!!A!!C!!U!!A1cC!!C!!C1aU1LG1eG1LC1aU1LG1aU1LA!!U1cU!!G1aA!!C1aC!!U!!U!!C1cU!!A!!A1aC1cC!!C!!G!!C1aC1cG1aC1aC1aC5zU!!U!!A4pU!!C1aG1aG1aG1cC!!G1cG1aG1aG!!A!!G!!A6nC1aA1LG1aU1aG!!U1cC!!A!!G!!G!!U!!G!!G6gG1aC1cA1LG!!U!!U..C4nC!!U!!C!!C!!U!!A!!A!!A!!A!!G1aG!!U!!A2aA!!C!!G!!G!!A1cG!!G!!C!!G3aC!!C!!C!!A!!A!!A!!G!!G!!U!!U!!C2aC!!C7rU!!C!!A1aG!!A!!A!!U!!G!!G..U!!C!!A1aU!!U4aC!!G!!C!!A!!G!!A!!G!!U!!G!!U!!A1cA!!A!!G!!G2[C!!A!!C!!A!!A!!G!!G!!G!!A!!G!!C!!U!!U!!G!!A2[C4nU!!G!!C!!G!!A!!G1cA!!C!!C!!U!!A1aC1aA1LA!!G1LU1LC!!G!!A!!G1tC!!A!!G!!G!!G!!A!!C!!G!!A!!A!!A!!G!!U!!C!!G!!G!!G!!C!!U!!U7aA1tG!!U1gG!!A!!U!!C!!C0bG!!G2[U!!G!!G!!U2gU!!C1cC1bG!!C!!A!!U!!G1aG1aA1aA1aG!!G!!G!!C!!C2aA1cU!!C!!G!!C!!U!!C!!A!!A!!C!!G!!G!!A!!U1gA!!A!!A1fA!!G1cC1aU!!A!!C!!C1aC!!C..A!!U1cC1aU1fC!!C!!C!!C!!C!!A1aA..C!!G1cG1[G!!G!!A!!G!!G&aU!!U!!U!!G!!G!!C!!A..C1aG!!G1aC1aU!!C!!A!!U1LC1aG!!C!!A2[U4gC1aC1aU1mG1aG1fG!!G!!C!!U!!G!!U7dA!!G1aU1LC!!G1aG1aU1aC!!C1aC1cA1[A!!G1aG1aG!!U!!U!!G1cG1aG1cC1fU1gG!!U1aU1aC1aG1aC1aC1aC1aA!!U1aU1gA1aA!!A!!G1cC!!G1aG!!U..C1aA1mG1aA1cA1LC1aG1aU1aC!!G!!U!!G&aA1cG1aA1aC!!A!!G1aU1aU1aC1aG1cG!!U!!C!!C1aC!!U2[A6gU1aC1aC1aG!!U1aC1cG1aC1cG1aG1cG1LC1aG1aC!!A!!G1aG1cA1aA1cA1aU1cU1aU1bG!!A1aG1aA1aG1aG1aA1bG!!C!!U1aG1cU1LC!!C1cU1aU!!A!!G!!U1aA1aC1aG1gA1cG1aA!!G1aG1eA1aC!!C1aG1cG1aG1cA1LU1cG1aG1LA1aC1aG1aC1cA1aC1tC!!G1cC1aU1eG1aG1aU!!G!!U6pA!!C1aC1aA1aG1aU1aU1aG1aU1aU1aC1cU!!G1aC1aC1aA1aA1cG1aG1aG1aC1aA5pU2oC!!G1aC1aU1aG1cG1aG&aU1aA1aG1aC1cU1bA!!U2aG1aU1aG1aC1aG1LG!!A1aC!!G1cG1aG1aA1cU1aA1aA1cG1aU!!G1aC!!U!!G7aA1aA5zA!!G!!C1aA1LU!!C!!U!!A!!A1aG!!C1fA1aU1aG7aA1cA!!G1aC!!C1aC!!C1mC1aC1aU1aC1aA!!A6dG!!A!!U!!G2aA9aG1aA!!U1aU1aU1cC1aC!!C!!A!!U1aU1cC!!C1aG!!C!!A1aA1aG1aG1cA1aA1cG1aU1aA1aA1aG1aA1aU1aC1aC1aC1aU1fG1bA!!A2aA1aG1gA1aU1cG1aA1aU1aC1aA1cG1cG3bU!!U!!G!!A4gU1aA1aG1aG1aU!!C1aU1cG1aA1aG1aG1aU!!G!!G0aA1aA1aG1aU1aG1aU1aG1aG1gC1aG1aA1cC1aA1aC1aA1aU5zG!!G0aA1LG1aC1cU!!G1eA!!C1aA1aG1cA1aU!!A4gC1aU1aA1cA!!U1aC1cG1aA1aU1aC1aG7aA1tG!!G!!A1aC!!U1aU1aA1aA!!C" }, "chain_B": { "num_nts": 111, "bseq": "UGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUCGGGGGUU&CCCCCUGUGAGAGUAGGACGCCGCCAA", "sstr": "(((((((....((((((((.....(.((.....(.....).....))...)....)))))).)).((........(.(((((..&))))).)........))..))))))).", "form": ".AA.AA.....AA.AA.A......A...........................A..A.AAA..AA.A...AAAA.A..AAAA..-&AAAA......A.A..A...AA.A...-", "helical_rise": 0.018, "helical_rise_std": 3.023, "helical_axis": [ -0.522, -0.589, -0.617 ], "point1": [ 176.369, 147.919, 78.165 ], "point2": [ 175.452, 146.885, 77.081 ], "num_chars": 331, "suite": "U!!G1aG1aU!!G!!G!!C!!G!!A!!U!!A!!G1aC1aG!!A1LA!!G!!A!!G!!G!!U1aC1aA1aC!!A!!C1tC!!C1cG!!U!!U!!C!!C!!C!!A1zU!!A!!C!!C!!G!!A!!A!!C!!A!!C!!G!!G1tA!!A1aG!!U!!U!!A1aA1aG1aC1cU1fC1aU!!U1aC7dA!!G1aC1aG1aC1aC1aG1eA1aU1aG1aG1cU1aA1aG1aU1aC1aG1cG1aG1cG!!G1zU2[U..C1aC!!C1aC1aC1aU!!G!!U!!G1eA1aG1aA1aG1aU!!A1aG!!G1LA1[C!!G!!C1aC!!G!!C!!C!!A!!A" } }, "num_nts": 2791, "nts": [ { "index": 1, "index_chain": 1, "chain_name": "A", "nt_resnum": 3, "nt_name": "U", "nt_code": "U", "nt_id": "///A/3", "linked_nts": [ null, "///A/4" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end", "alpha": null, "beta": -128.219, "gamma": 55.952, "delta": 83.227, "epsilon": 177.177, "zeta": -82.189, "epsilon_zeta": -100.634, "bb_type": "BI", "chi": -166.399, "glyco_bond": "anti", "C5prime_xyz": [ -1.678, 8.768, 0.863 ], "P_xyz": [ 0.180, 8.985, 2.691 ], "form": ".", "ssZp": 4.006, "Dp": 4.106, "splay_angle": 27.382, "splay_distance": 4.150, "splay_ratio": 0.237, "d22": 5.262, "d64": 4.796, "eta": null, "theta": -153.699, "eta_prime": null, "theta_prime": -147.393, "eta_base": null, "theta_base": -114.772, "v0": -3.865, "v1": -17.330, "v2": 30.598, "v3": -33.713, "v4": 23.738, "amplitude": 33.771, "phase_angle": 25.036, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.007, "origin": [ 138.025, 99.641, 203.099 ], "x_axis": [ -0.910, 0.354, -0.216 ], "y_axis": [ -0.047, 0.428, 0.902 ], "z_axis": [ 0.412, 0.831, -0.373 ], "quaternion": [ 0.191, 0.093, 0.823, 0.527 ] } }, { "index": 2, "index_chain": 2, "chain_name": "A", "nt_resnum": 4, "nt_name": "U", "nt_code": "U", "nt_id": "///A/4", "linked_nts": [ "///A/3", "///A/5" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -149.241, "beta": -141.420, "gamma": 113.589, "delta": 85.615, "epsilon": -152.012, "zeta": -62.906, "epsilon_zeta": -89.106, "bb_type": "BI", "chi": -166.332, "glyco_bond": "anti", "C5prime_xyz": [ -1.179, 8.597, 0.942 ], "P_xyz": [ 1.425, 8.462, 0.624 ], "form": "A", "ssZp": 4.414, "Dp": 4.520, "splay_angle": 24.596, "splay_distance": 3.978, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 166.467, "theta": -128.675, "eta_prime": 178.005, "theta_prime": -135.874, "eta_base": -141.881, "theta_base": -116.616, "v0": 2.704, "v1": -22.551, "v2": 32.645, "v3": -31.991, "v4": 18.524, "amplitude": 33.661, "phase_angle": 14.113, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.108, "frame": { "rmsd": 0.008, "origin": [ 140.169, 102.312, 200.757 ], "x_axis": [ -0.746, 0.561, 0.359 ], "y_axis": [ 0.474, 0.069, 0.878 ], "z_axis": [ 0.468, 0.825, -0.318 ], "quaternion": [ 0.037, 0.354, 0.730, 0.583 ] } }, { "index": 3, "index_chain": 3, "chain_name": "A", "nt_resnum": 5, "nt_name": "A", "nt_code": "A", "nt_id": "///A/5", "linked_nts": [ "///A/4", "///A/6" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -69.559, "beta": -179.593, "gamma": 49.865, "delta": 79.834, "epsilon": -153.148, "zeta": -78.313, "epsilon_zeta": -74.835, "bb_type": "BI", "chi": -163.169, "glyco_bond": "anti", "C5prime_xyz": [ -1.629, 8.742, 0.689 ], "P_xyz": [ 0.823, 9.409, 1.315 ], "form": "A", "ssZp": 4.428, "Dp": 4.554, "splay_angle": 22.536, "splay_distance": 3.543, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 164.340, "theta": -155.054, "eta_prime": -178.945, "theta_prime": -153.538, "eta_base": -136.814, "theta_base": -126.315, "v0": -0.871, "v1": -22.012, "v2": 35.248, "v3": -36.736, "v4": 23.702, "amplitude": 37.489, "phase_angle": 19.913, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.892, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 140.441, 105.705, 198.697 ], "x_axis": [ -0.419, 0.396, 0.817 ], "y_axis": [ 0.790, -0.285, 0.543 ], "z_axis": [ 0.448, 0.873, -0.193 ], "quaternion": [ -0.160, 0.515, 0.576, 0.615 ] } }, { "index": 4, "index_chain": 4, "chain_name": "A", "nt_resnum": 6, "nt_name": "A", "nt_code": "A", "nt_id": "///A/6", "linked_nts": [ "///A/5", "///A/7" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -57.850, "beta": 164.774, "gamma": 51.299, "delta": 78.337, "epsilon": -140.913, "zeta": -76.456, "epsilon_zeta": -64.458, "bb_type": "BI", "chi": -168.942, "glyco_bond": "anti", "C5prime_xyz": [ -1.439, 8.629, 1.038 ], "P_xyz": [ 1.130, 9.032, 1.294 ], "form": "A", "ssZp": 4.604, "Dp": 4.698, "splay_angle": 22.646, "splay_distance": 3.689, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 167.826, "theta": -143.306, "eta_prime": 178.382, "theta_prime": -141.928, "eta_base": -142.070, "theta_base": -118.450, "v0": 2.259, "v1": -25.715, "v2": 38.179, "v3": -37.906, "v4": 22.431, "amplitude": 39.601, "phase_angle": 15.398, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.893, "filter_rmsd": 0.043, "frame": { "rmsd": 0.008, "origin": [ 140.620, 109.075, 197.618 ], "x_axis": [ 0.016, 0.142, 0.990 ], "y_axis": [ 0.892, -0.450, 0.050 ], "z_axis": [ 0.453, 0.882, -0.134 ], "quaternion": [ -0.329, 0.633, 0.408, 0.570 ] } }, { "index": 5, "index_chain": 5, "chain_name": "A", "nt_resnum": 7, "nt_name": "G", "nt_code": "G", "nt_id": "///A/7", "linked_nts": [ "///A/6", "///A/8" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -55.985, "beta": 157.909, "gamma": 62.190, "delta": 77.960, "epsilon": -151.413, "zeta": -80.108, "epsilon_zeta": -71.305, "bb_type": "BI", "chi": -171.867, "glyco_bond": "anti", "C5prime_xyz": [ -1.879, 8.714, 1.144 ], "P_xyz": [ 0.605, 9.480, 1.145 ], "form": "A", "ssZp": 4.572, "Dp": 4.574, "splay_angle": 24.402, "splay_distance": 3.821, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 170.356, "theta": -154.826, "eta_prime": -172.402, "theta_prime": -155.893, "eta_base": -131.164, "theta_base": -130.137, "v0": -3.044, "v1": -20.818, "v2": 35.383, "v3": -38.147, "v4": 25.982, "amplitude": 38.455, "phase_angle": 23.058, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.745, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 140.387, 112.695, 198.288 ], "x_axis": [ 0.433, -0.123, 0.893 ], "y_axis": [ 0.794, -0.417, -0.443 ], "z_axis": [ 0.427, 0.900, -0.083 ], "quaternion": [ -0.483, 0.695, 0.241, 0.475 ] } }, { "index": 6, "index_chain": 6, "chain_name": "A", "nt_resnum": 8, "nt_name": "U", "nt_code": "U", "nt_id": "///A/8", "linked_nts": [ "///A/7", "///A/9" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,phosphate", "alpha": -55.712, "beta": 167.380, "gamma": 52.953, "delta": 79.965, "epsilon": -147.241, "zeta": -72.371, "epsilon_zeta": -74.870, "bb_type": "BI", "chi": -169.798, "glyco_bond": "anti", "C5prime_xyz": [ -1.368, 8.639, 1.097 ], "P_xyz": [ 1.185, 9.031, 1.475 ], "form": "A", "ssZp": 4.586, "Dp": 4.635, "splay_angle": 23.657, "splay_distance": 3.672, "splay_ratio": 0.206, "d22": 3.900, "d64": 4.064, "eta": 172.977, "theta": -143.563, "eta_prime": -176.485, "theta_prime": -140.970, "eta_base": -137.232, "theta_base": -105.746, "v0": 1.198, "v1": -23.836, "v2": 36.185, "v3": -36.456, "v4": 22.254, "amplitude": 37.803, "phase_angle": 16.825, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.864, "filter_rmsd": 0.102, "frame": { "rmsd": 0.007, "origin": [ 140.587, 116.402, 199.189 ], "x_axis": [ 0.795, -0.328, 0.510 ], "y_axis": [ 0.420, -0.309, -0.853 ], "z_axis": [ 0.438, 0.893, -0.108 ], "quaternion": [ 0.587, -0.744, -0.031, -0.319 ] } }, { "index": 7, "index_chain": 7, "chain_name": "A", "nt_resnum": 9, "nt_name": "U", "nt_code": "U", "nt_id": "///A/9", "linked_nts": [ "///A/8", "///A/10" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop", "alpha": -60.763, "beta": 162.965, "gamma": 61.277, "delta": 84.166, "epsilon": -168.789, "zeta": -81.510, "epsilon_zeta": -87.278, "bb_type": "BI", "chi": -171.151, "glyco_bond": "anti", "C5prime_xyz": [ -1.527, 8.607, 1.170 ], "P_xyz": [ 1.055, 8.928, 1.461 ], "form": ".", "ssZp": 4.293, "Dp": 4.355, "splay_angle": 31.430, "splay_distance": 4.915, "splay_ratio": 0.273, "d22": null, "d64": null, "eta": 168.380, "theta": -163.714, "eta_prime": -169.357, "theta_prime": -168.248, "eta_base": -114.482, "theta_base": -167.040, "v0": -0.017, "v1": -20.799, "v2": 32.422, "v3": -33.367, "v4": 21.081, "amplitude": 34.218, "phase_angle": 18.644, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.846, "filter_rmsd": 0.102, "frame": { "rmsd": 0.007, "origin": [ 142.710, 119.108, 200.477 ], "x_axis": [ 0.870, -0.479, -0.115 ], "y_axis": [ -0.157, -0.047, -0.986 ], "z_axis": [ 0.467, 0.877, -0.116 ], "quaternion": [ 0.653, -0.713, 0.223, -0.123 ] } }, { "index": 8, "index_chain": 8, "chain_name": "A", "nt_resnum": 10, "nt_name": "A", "nt_code": "A", "nt_id": "///A/10", "linked_nts": [ "///A/9", "///A/11" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -71.142, "beta": 172.343, "gamma": 69.925, "delta": 83.149, "epsilon": -138.235, "zeta": -75.087, "epsilon_zeta": -63.148, "bb_type": "BI", "chi": -172.113, "glyco_bond": "anti", "C5prime_xyz": [ -1.632, 8.628, 1.211 ], "P_xyz": [ 0.918, 9.138, 1.546 ], "form": ".", "ssZp": 4.465, "Dp": 4.540, "splay_angle": 24.868, "splay_distance": 3.856, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": -177.176, "theta": -135.872, "eta_prime": -173.191, "theta_prime": -132.783, "eta_base": -164.998, "theta_base": -77.017, "v0": -1.614, "v1": -19.850, "v2": 32.456, "v3": -34.307, "v4": 22.682, "amplitude": 34.813, "phase_angle": 21.204, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.441, "filter_rmsd": 0.040, "frame": { "rmsd": 0.008, "origin": [ 141.761, 123.066, 203.232 ], "x_axis": [ 0.890, -0.332, -0.314 ], "y_axis": [ -0.321, 0.035, -0.946 ], "z_axis": [ 0.325, 0.943, -0.076 ], "quaternion": [ 0.680, -0.695, 0.235, -0.004 ] } }, { "index": 9, "index_chain": 9, "chain_name": "A", "nt_resnum": 11, "nt_name": "G", "nt_code": "G", "nt_id": "///A/11", "linked_nts": [ "///A/10", "///A/12" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -56.487, "beta": 159.582, "gamma": 54.089, "delta": 88.258, "epsilon": -175.866, "zeta": -68.303, "epsilon_zeta": -107.563, "bb_type": "BI", "chi": -157.413, "glyco_bond": "anti", "C5prime_xyz": [ -1.206, 8.749, 0.476 ], "P_xyz": [ 1.406, 8.771, 0.723 ], "form": ".", "ssZp": 3.984, "Dp": 4.141, "splay_angle": 25.366, "splay_distance": 3.979, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": 162.886, "theta": -129.889, "eta_prime": -169.252, "theta_prime": -133.984, "eta_base": -93.207, "theta_base": -84.464, "v0": 0.599, "v1": -18.760, "v2": 28.657, "v3": -29.148, "v4": 18.105, "amplitude": 30.056, "phase_angle": 17.551, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.757, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 144.666, 125.149, 201.784 ], "x_axis": [ 0.267, -0.191, -0.945 ], "y_axis": [ -0.873, 0.367, -0.321 ], "z_axis": [ 0.408, 0.910, -0.069 ], "quaternion": [ 0.625, -0.492, 0.541, 0.273 ] } }, { "index": 10, "index_chain": 10, "chain_name": "A", "nt_resnum": 12, "nt_name": "A", "nt_code": "A", "nt_id": "///A/12", "linked_nts": [ "///A/11", "///A/13" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": -145.166, "beta": -141.257, "gamma": 93.918, "delta": 84.273, "epsilon": 25.733, "zeta": 163.535, "epsilon_zeta": -137.802, "bb_type": "--", "chi": -146.768, "glyco_bond": "anti", "C5prime_xyz": [ -0.836, 8.512, -0.258 ], "P_xyz": [ 1.671, 7.892, -0.732 ], "form": ".", "ssZp": 2.249, "Dp": 3.313, "splay_angle": 47.837, "splay_distance": 7.740, "splay_ratio": 0.410, "d22": null, "d64": null, "eta": -167.258, "theta": -101.771, "eta_prime": -152.521, "theta_prime": -103.407, "eta_base": -95.634, "theta_base": -99.647, "v0": 8.728, "v1": -28.830, "v2": 36.981, "v3": -32.938, "v4": 15.312, "amplitude": 37.144, "phase_angle": 5.366, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.011, "origin": [ 145.408, 128.603, 199.954 ], "x_axis": [ -0.534, 0.168, -0.828 ], "y_axis": [ -0.676, 0.504, 0.538 ], "z_axis": [ 0.507, 0.847, -0.156 ], "quaternion": [ 0.451, -0.172, 0.741, 0.468 ] } }, { "index": 11, "index_chain": 11, "chain_name": "A", "nt_resnum": 13, "nt_name": "A", "nt_code": "A", "nt_id": "///A/13", "linked_nts": [ "///A/12", "///A/14" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate", "alpha": -84.723, "beta": 136.632, "gamma": 37.191, "delta": 141.215, "epsilon": -88.433, "zeta": 119.417, "epsilon_zeta": 152.150, "bb_type": "--", "chi": -107.130, "glyco_bond": "anti", "C5prime_xyz": [ -2.197, 8.224, -1.902 ], "P_xyz": [ 0.376, 8.660, -1.750 ], "form": ".", "ssZp": 0.595, "Dp": 0.884, "splay_angle": 43.001, "splay_distance": 7.105, "splay_ratio": 0.374, "d22": null, "d64": null, "eta": 166.531, "theta": 140.795, "eta_prime": -152.658, "theta_prime": 126.309, "eta_base": -150.635, "theta_base": 140.999, "v0": -22.822, "v1": 34.468, "v2": -32.365, "v3": 20.031, "v4": 1.539, "amplitude": 34.733, "phase_angle": 158.719, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.011, "origin": [ 146.337, 136.285, 199.777 ], "x_axis": [ -0.691, -0.562, -0.455 ], "y_axis": [ -0.545, -0.009, 0.838 ], "z_axis": [ -0.475, 0.827, -0.300 ], "quaternion": [ -0.007, -0.393, 0.704, 0.591 ] } }, { "index": 12, "index_chain": 12, "chain_name": "A", "nt_resnum": 14, "nt_name": "A", "nt_code": "A", "nt_id": "///A/14", "linked_nts": [ "///A/13", "///A/15" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,A-minor", "alpha": 178.434, "beta": -158.645, "gamma": 73.075, "delta": 84.297, "epsilon": -111.175, "zeta": -80.281, "epsilon_zeta": -30.894, "bb_type": "--", "chi": -156.077, "glyco_bond": "anti", "C5prime_xyz": [ -1.051, 8.600, 0.304 ], "P_xyz": [ 1.568, 8.561, 0.393 ], "form": ".", "ssZp": 4.045, "Dp": 4.783, "splay_angle": 35.378, "splay_distance": 6.049, "splay_ratio": 0.307, "d22": null, "d64": null, "eta": 155.368, "theta": -81.679, "eta_prime": 140.408, "theta_prime": -87.885, "eta_base": 152.038, "theta_base": -52.590, "v0": 5.847, "v1": -26.640, "v2": 36.199, "v3": -33.806, "v4": 17.674, "amplitude": 36.721, "phase_angle": 9.674, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6g", "suiteness": 0.059, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 151.746, 139.010, 203.493 ], "x_axis": [ -0.799, -0.078, -0.596 ], "y_axis": [ -0.600, 0.073, 0.796 ], "z_axis": [ -0.019, 0.994, -0.105 ], "quaternion": [ 0.205, -0.241, 0.703, 0.637 ] } }, { "index": 13, "index_chain": 13, "chain_name": "A", "nt_resnum": 15, "nt_name": "G", "nt_code": "G", "nt_id": "///A/15", "linked_nts": [ "///A/14", "///A/16" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack", "alpha": 119.489, "beta": -136.420, "gamma": -161.693, "delta": 79.926, "epsilon": -142.482, "zeta": -69.359, "epsilon_zeta": -73.123, "bb_type": "BI", "chi": -174.353, "glyco_bond": "anti", "C5prime_xyz": [ -1.195, 8.474, 1.356 ], "P_xyz": [ -0.115, 10.319, -0.161 ], "form": "A", "ssZp": 4.725, "Dp": 4.742, "splay_angle": 26.235, "splay_distance": 4.134, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 151.725, "theta": -169.280, "eta_prime": -175.730, "theta_prime": -164.020, "eta_base": -107.469, "theta_base": -132.617, "v0": 6.412, "v1": -28.940, "v2": 39.322, "v3": -36.633, "v4": 19.096, "amplitude": 39.875, "phase_angle": 9.558, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 146.212, 140.196, 201.357 ], "x_axis": [ -0.873, -0.363, 0.325 ], "y_axis": [ 0.191, 0.357, 0.914 ], "z_axis": [ -0.448, 0.861, -0.243 ], "quaternion": [ -0.246, -0.054, 0.786, 0.564 ] } }, { "index": 14, "index_chain": 14, "chain_name": "A", "nt_resnum": 16, "nt_name": "G", "nt_code": "G", "nt_id": "///A/16", "linked_nts": [ "///A/15", "///A/17" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.853, "beta": 167.221, "gamma": 65.244, "delta": 79.851, "epsilon": -152.116, "zeta": -75.122, "epsilon_zeta": -76.994, "bb_type": "BI", "chi": -175.888, "glyco_bond": "anti", "C5prime_xyz": [ -1.538, 8.619, 1.411 ], "P_xyz": [ 1.010, 9.140, 1.700 ], "form": "A", "ssZp": 4.571, "Dp": 4.577, "splay_angle": 27.533, "splay_distance": 4.273, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 173.180, "theta": -151.502, "eta_prime": -168.202, "theta_prime": -150.143, "eta_base": -121.700, "theta_base": -128.290, "v0": -0.139, "v1": -22.620, "v2": 35.469, "v3": -36.510, "v4": 23.160, "amplitude": 37.470, "phase_angle": 18.813, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.741, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 142.950, 141.852, 199.433 ], "x_axis": [ -0.585, -0.120, 0.802 ], "y_axis": [ 0.676, 0.474, 0.564 ], "z_axis": [ -0.448, 0.872, -0.196 ], "quaternion": [ -0.416, 0.185, 0.751, 0.478 ] } }, { "index": 15, "index_chain": 15, "chain_name": "A", "nt_resnum": 17, "nt_name": "G", "nt_code": "G", "nt_id": "///A/17", "linked_nts": [ "///A/16", "///A/18" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -63.386, "beta": -175.554, "gamma": 50.721, "delta": 82.581, "epsilon": -147.527, "zeta": -69.376, "epsilon_zeta": -78.151, "bb_type": "BI", "chi": -161.674, "glyco_bond": "anti", "C5prime_xyz": [ -1.140, 8.702, 0.654 ], "P_xyz": [ 1.386, 9.001, 1.258 ], "form": "A", "ssZp": 4.430, "Dp": 4.621, "splay_angle": 23.858, "splay_distance": 3.844, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 176.534, "theta": -141.181, "eta_prime": -174.907, "theta_prime": -138.837, "eta_base": -143.922, "theta_base": -113.047, "v0": 3.254, "v1": -24.816, "v2": 35.767, "v3": -34.867, "v4": 19.976, "amplitude": 36.809, "phase_angle": 13.670, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.929, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 139.847, 144.120, 197.567 ], "x_axis": [ -0.121, 0.136, 0.983 ], "y_axis": [ 0.903, 0.426, 0.053 ], "z_axis": [ -0.412, 0.895, -0.174 ], "quaternion": [ 0.532, -0.396, -0.656, -0.361 ] } }, { "index": 16, "index_chain": 16, "chain_name": "A", "nt_resnum": 18, "nt_name": "C", "nt_code": "C", "nt_id": "///A/18", "linked_nts": [ "///A/17", "///A/19" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -64.776, "beta": 171.906, "gamma": 54.208, "delta": 78.669, "epsilon": -149.353, "zeta": -70.880, "epsilon_zeta": -78.473, "bb_type": "BI", "chi": -161.684, "glyco_bond": "anti", "C5prime_xyz": [ -1.460, 8.801, 0.583 ], "P_xyz": [ 1.083, 9.390, 0.648 ], "form": "A", "ssZp": 4.477, "Dp": 4.636, "splay_angle": 21.043, "splay_distance": 3.340, "splay_ratio": 0.184, "d22": null, "d64": null, "eta": 165.827, "theta": -146.223, "eta_prime": -178.497, "theta_prime": -145.205, "eta_base": -137.569, "theta_base": -112.983, "v0": -0.316, "v1": -23.262, "v2": 36.679, "v3": -37.882, "v4": 24.044, "amplitude": 38.804, "phase_angle": 19.050, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.980, "filter_rmsd": 0.058, "frame": { "rmsd": 0.011, "origin": [ 137.125, 146.800, 197.999 ], "x_axis": [ 0.411, 0.255, 0.875 ], "y_axis": [ 0.812, 0.333, -0.479 ], "z_axis": [ -0.414, 0.908, -0.070 ], "quaternion": [ 0.647, -0.536, -0.498, -0.215 ] } }, { "index": 17, "index_chain": 17, "chain_name": "A", "nt_resnum": 19, "nt_name": "G", "nt_code": "G", "nt_id": "///A/19", "linked_nts": [ "///A/18", "///A/20" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -74.993, "beta": 176.145, "gamma": 57.927, "delta": 82.799, "epsilon": -157.216, "zeta": -64.345, "epsilon_zeta": -92.871, "bb_type": "BI", "chi": -165.466, "glyco_bond": "anti", "C5prime_xyz": [ -1.442, 8.713, 0.858 ], "P_xyz": [ 1.104, 9.139, 1.259 ], "form": "A", "ssZp": 4.436, "Dp": 4.513, "splay_angle": 22.465, "splay_distance": 3.599, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 162.488, "theta": -142.140, "eta_prime": 176.829, "theta_prime": -142.909, "eta_base": -135.772, "theta_base": -112.201, "v0": 0.846, "v1": -22.755, "v2": 34.721, "v3": -35.171, "v4": 21.673, "amplitude": 36.362, "phase_angle": 17.280, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.882, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 135.742, 149.390, 199.590 ], "x_axis": [ 0.918, 0.059, 0.392 ], "y_axis": [ 0.373, 0.207, -0.904 ], "z_axis": [ -0.134, 0.977, 0.168 ], "quaternion": [ 0.757, -0.621, -0.174, -0.104 ] } }, { "index": 18, "index_chain": 18, "chain_name": "A", "nt_resnum": 20, "nt_name": "C", "nt_code": "C", "nt_id": "///A/20", "linked_nts": [ "///A/19", "///A/21" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -69.972, "beta": 176.676, "gamma": 56.612, "delta": 80.305, "epsilon": -153.589, "zeta": -69.224, "epsilon_zeta": -84.365, "bb_type": "BI", "chi": -162.967, "glyco_bond": "anti", "C5prime_xyz": [ -1.315, 8.798, 0.688 ], "P_xyz": [ 1.234, 9.270, 1.061 ], "form": "A", "ssZp": 4.407, "Dp": 4.542, "splay_angle": 25.244, "splay_distance": 4.039, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 168.222, "theta": -146.603, "eta_prime": -176.304, "theta_prime": -145.077, "eta_base": -128.580, "theta_base": -121.277, "v0": -0.318, "v1": -22.360, "v2": 35.244, "v3": -36.391, "v4": 23.149, "amplitude": 37.291, "phase_angle": 19.070, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.907, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 135.844, 152.262, 201.756 ], "x_axis": [ 0.962, 0.142, -0.235 ], "y_axis": [ -0.256, 0.157, -0.954 ], "z_axis": [ -0.099, 0.977, 0.188 ], "quaternion": [ 0.759, -0.636, 0.045, 0.131 ] } }, { "index": 19, "index_chain": 19, "chain_name": "A", "nt_resnum": 21, "nt_name": "A", "nt_code": "A", "nt_id": "///A/21", "linked_nts": [ "///A/20", "///A/22" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -63.162, "beta": 177.566, "gamma": 51.981, "delta": 80.514, "epsilon": -148.487, "zeta": -75.492, "epsilon_zeta": -72.995, "bb_type": "BI", "chi": -161.480, "glyco_bond": "anti", "C5prime_xyz": [ -1.495, 8.727, 0.596 ], "P_xyz": [ 1.020, 9.308, 1.015 ], "form": "A", "ssZp": 4.407, "Dp": 4.594, "splay_angle": 24.652, "splay_distance": 3.925, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 171.414, "theta": -147.579, "eta_prime": -175.623, "theta_prime": -144.652, "eta_base": -139.357, "theta_base": -113.749, "v0": -0.040, "v1": -22.486, "v2": 35.195, "v3": -36.187, "v4": 22.835, "amplitude": 37.147, "phase_angle": 18.658, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.971, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 136.527, 155.750, 203.673 ], "x_axis": [ 0.705, 0.097, -0.702 ], "y_axis": [ -0.708, 0.043, -0.705 ], "z_axis": [ -0.039, 0.994, 0.099 ], "quaternion": [ 0.680, -0.625, 0.244, 0.296 ] } }, { "index": 20, "index_chain": 20, "chain_name": "A", "nt_resnum": 22, "nt_name": "C", "nt_code": "C", "nt_id": "///A/22", "linked_nts": [ "///A/21", "///A/23" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -55.597, "beta": 165.431, "gamma": 55.104, "delta": 79.965, "epsilon": -156.392, "zeta": -75.601, "epsilon_zeta": -80.791, "bb_type": "BI", "chi": -160.581, "glyco_bond": "anti", "C5prime_xyz": [ -1.385, 8.818, 0.544 ], "P_xyz": [ 1.191, 9.260, 0.584 ], "form": ".", "ssZp": 4.395, "Dp": 4.545, "splay_angle": 20.696, "splay_distance": 3.943, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 171.278, "theta": -122.650, "eta_prime": -172.641, "theta_prime": -137.352, "eta_base": -128.067, "theta_base": -131.344, "v0": -0.391, "v1": -22.348, "v2": 35.296, "v3": -36.496, "v4": 23.268, "amplitude": 37.373, "phase_angle": 19.190, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.895, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 138.081, 159.348, 203.899 ], "x_axis": [ 0.176, 0.066, -0.982 ], "y_axis": [ -0.984, 0.015, -0.176 ], "z_axis": [ 0.003, 0.998, 0.067 ], "quaternion": [ 0.561, -0.523, 0.439, 0.468 ] } }, { "index": 21, "index_chain": 21, "chain_name": "A", "nt_resnum": 23, "nt_name": "G", "nt_code": "G", "nt_id": "///A/23", "linked_nts": [ "///A/22", "///A/24" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 137.082, "beta": -164.329, "gamma": -167.277, "delta": 81.360, "epsilon": -148.581, "zeta": -78.007, "epsilon_zeta": -70.574, "bb_type": "BI", "chi": -179.420, "glyco_bond": "anti", "C5prime_xyz": [ -1.623, 8.503, 1.625 ], "P_xyz": [ -0.432, 10.695, 0.838 ], "form": "A", "ssZp": 4.537, "Dp": 4.565, "splay_angle": 24.397, "splay_distance": 3.789, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 162.706, "theta": 175.820, "eta_prime": 174.569, "theta_prime": -173.802, "eta_base": -158.184, "theta_base": -142.295, "v0": 0.054, "v1": -22.235, "v2": 34.724, "v3": -35.678, "v4": 22.454, "amplitude": 36.625, "phase_angle": 18.541, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.565, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 140.879, 162.124, 203.793 ], "x_axis": [ -0.181, -0.210, -0.961 ], "y_axis": [ -0.983, 0.057, 0.173 ], "z_axis": [ 0.019, 0.976, -0.217 ], "quaternion": [ 0.406, -0.495, 0.603, 0.476 ] } }, { "index": 22, "index_chain": 22, "chain_name": "A", "nt_resnum": 24, "nt_name": "G", "nt_code": "G", "nt_id": "///A/24", "linked_nts": [ "///A/23", "///A/25" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -55.873, "beta": 179.218, "gamma": 44.895, "delta": 84.801, "epsilon": -175.016, "zeta": -89.136, "epsilon_zeta": -85.880, "bb_type": "BI", "chi": -164.708, "glyco_bond": "anti", "C5prime_xyz": [ -1.308, 8.664, 0.891 ], "P_xyz": [ 1.114, 8.899, 1.847 ], "form": "A", "ssZp": 4.208, "Dp": 4.295, "splay_angle": 22.482, "splay_distance": 3.517, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 171.698, "theta": -138.408, "eta_prime": -174.761, "theta_prime": -138.674, "eta_base": -137.078, "theta_base": -111.338, "v0": 1.964, "v1": -22.432, "v2": 33.171, "v3": -33.000, "v4": 19.595, "amplitude": 34.413, "phase_angle": 15.441, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.798, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 142.847, 165.136, 202.605 ], "x_axis": [ -0.701, -0.211, -0.682 ], "y_axis": [ -0.710, 0.115, 0.694 ], "z_axis": [ -0.068, 0.971, -0.231 ], "quaternion": [ 0.214, -0.322, 0.715, 0.582 ] } }, { "index": 23, "index_chain": 23, "chain_name": "A", "nt_resnum": 25, "nt_name": "U", "nt_code": "U", "nt_id": "///A/25", "linked_nts": [ "///A/24", "///A/26" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 178.920, "beta": -128.562, "gamma": 143.262, "delta": 85.343, "epsilon": -125.090, "zeta": -71.482, "epsilon_zeta": -53.608, "bb_type": "--", "chi": -177.485, "glyco_bond": "anti", "C5prime_xyz": [ -1.931, 8.648, 1.395 ], "P_xyz": [ 0.616, 9.056, 1.020 ], "form": ".", "ssZp": 4.065, "Dp": 4.243, "splay_angle": 30.842, "splay_distance": 4.863, "splay_ratio": 0.268, "d22": null, "d64": null, "eta": 170.076, "theta": -117.916, "eta_prime": -173.173, "theta_prime": -119.391, "eta_base": -133.076, "theta_base": -59.935, "v0": -7.189, "v1": -13.365, "v2": 27.464, "v3": -32.420, "v4": 24.981, "amplitude": 32.114, "phase_angle": 31.217, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.111, "frame": { "rmsd": 0.013, "origin": [ 143.163, 168.060, 200.678 ], "x_axis": [ -0.961, -0.232, -0.153 ], "y_axis": [ -0.204, 0.214, 0.955 ], "z_axis": [ -0.189, 0.949, -0.253 ], "quaternion": [ -0.012, -0.140, 0.779, 0.611 ] } }, { "index": 24, "index_chain": 24, "chain_name": "A", "nt_resnum": 26, "nt_name": "G", "nt_code": "G", "nt_id": "///A/26", "linked_nts": [ "///A/25", "///A/27" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -44.555, "beta": 172.013, "gamma": 29.207, "delta": 88.025, "epsilon": 179.518, "zeta": -88.543, "epsilon_zeta": -91.939, "bb_type": "BI", "chi": -121.789, "glyco_bond": "anti", "C5prime_xyz": [ -1.022, 8.293, -1.493 ], "P_xyz": [ 1.594, 8.493, -1.359 ], "form": ".", "ssZp": 2.923, "Dp": 4.241, "splay_angle": 23.170, "splay_distance": 3.904, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 157.019, "theta": -135.706, "eta_prime": -172.878, "theta_prime": -126.549, "eta_base": -93.829, "theta_base": -91.682, "v0": 7.282, "v1": -24.768, "v2": 32.032, "v3": -28.788, "v4": 13.642, "amplitude": 32.210, "phase_angle": 6.010, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.113, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 139.469, 171.058, 201.686 ], "x_axis": [ -0.554, 0.105, 0.826 ], "y_axis": [ 0.738, 0.522, 0.428 ], "z_axis": [ -0.386, 0.847, -0.366 ], "quaternion": [ -0.388, 0.270, 0.781, 0.408 ] } }, { "index": 25, "index_chain": 25, "chain_name": "A", "nt_resnum": 27, "nt_name": "G", "nt_code": "G", "nt_id": "///A/27", "linked_nts": [ "///A/26", "///A/28" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 177.261, "beta": -118.282, "gamma": 155.976, "delta": 140.841, "epsilon": -107.173, "zeta": 141.997, "epsilon_zeta": 110.830, "bb_type": "BII", "chi": -104.024, "glyco_bond": "anti", "C5prime_xyz": [ -2.340, 8.255, -2.002 ], "P_xyz": [ -0.364, 7.433, -3.475 ], "form": ".", "ssZp": 1.207, "Dp": 1.348, "splay_angle": 48.647, "splay_distance": 8.039, "splay_ratio": 0.417, "d22": null, "d64": null, "eta": -157.325, "theta": 150.191, "eta_prime": -128.137, "theta_prime": 133.416, "eta_base": -100.140, "theta_base": 165.646, "v0": -25.487, "v1": 36.448, "v2": -32.912, "v3": 19.002, "v4": 3.892, "amplitude": 36.259, "phase_angle": 155.190, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.042, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 138.751, 174.697, 202.904 ], "x_axis": [ -0.098, 0.224, 0.970 ], "y_axis": [ 0.658, 0.746, -0.105 ], "z_axis": [ -0.747, 0.627, -0.220 ], "quaternion": [ 0.597, -0.307, -0.718, -0.182 ] } }, { "index": 26, "index_chain": 26, "chain_name": "A", "nt_resnum": 28, "nt_name": "A", "nt_code": "A", "nt_id": "///A/28", "linked_nts": [ "///A/27", "///A/29" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 133.374, "beta": -145.642, "gamma": 133.928, "delta": 80.872, "epsilon": -127.329, "zeta": -71.107, "epsilon_zeta": -56.222, "bb_type": "BI", "chi": -177.214, "glyco_bond": "anti", "C5prime_xyz": [ -1.323, 8.344, 1.524 ], "P_xyz": [ 1.075, 8.860, 0.653 ], "form": ".", "ssZp": 4.738, "Dp": 4.774, "splay_angle": 28.418, "splay_distance": 4.437, "splay_ratio": 0.249, "d22": null, "d64": null, "eta": 156.221, "theta": -126.518, "eta_prime": 147.077, "theta_prime": -127.448, "eta_base": 178.037, "theta_base": -88.042, "v0": 5.102, "v1": -27.218, "v2": 37.856, "v3": -35.977, "v4": 19.475, "amplitude": 38.595, "phase_angle": 11.229, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.013, "origin": [ 136.461, 176.257, 195.357 ], "x_axis": [ -0.229, 0.407, 0.884 ], "y_axis": [ 0.916, 0.397, 0.054 ], "z_axis": [ -0.330, 0.823, -0.463 ], "quaternion": [ -0.420, 0.458, 0.723, 0.303 ] } }, { "index": 27, "index_chain": 27, "chain_name": "A", "nt_resnum": 29, "nt_name": "U", "nt_code": "U", "nt_id": "///A/29", "linked_nts": [ "///A/28", "///A/30" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -50.953, "beta": 162.852, "gamma": 53.663, "delta": 80.808, "epsilon": -139.185, "zeta": -76.262, "epsilon_zeta": -62.924, "bb_type": "BI", "chi": -161.705, "glyco_bond": "anti", "C5prime_xyz": [ -1.572, 8.730, 0.616 ], "P_xyz": [ 0.989, 9.225, 0.655 ], "form": "A", "ssZp": 4.406, "Dp": 4.639, "splay_angle": 23.834, "splay_distance": 3.818, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 169.635, "theta": -138.751, "eta_prime": -166.833, "theta_prime": -137.874, "eta_base": -103.198, "theta_base": -101.961, "v0": -0.172, "v1": -22.351, "v2": 35.111, "v3": -36.185, "v4": 22.934, "amplitude": 37.106, "phase_angle": 18.872, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.649, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 134.475, 179.926, 196.870 ], "x_axis": [ 0.534, 0.582, 0.614 ], "y_axis": [ 0.729, 0.052, -0.683 ], "z_axis": [ -0.429, 0.812, -0.396 ], "quaternion": [ 0.545, -0.685, -0.478, -0.067 ] } }, { "index": 28, "index_chain": 28, "chain_name": "A", "nt_resnum": 30, "nt_name": "G", "nt_code": "G", "nt_id": "///A/30", "linked_nts": [ "///A/29", "///A/31" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,A-minor", "alpha": -52.884, "beta": 172.162, "gamma": 39.322, "delta": 82.508, "epsilon": -163.724, "zeta": -76.570, "epsilon_zeta": -87.154, "bb_type": "BI", "chi": -159.572, "glyco_bond": "anti", "C5prime_xyz": [ -1.279, 8.781, 0.532 ], "P_xyz": [ 1.200, 9.219, 1.226 ], "form": "A", "ssZp": 4.296, "Dp": 4.428, "splay_angle": 23.367, "splay_distance": 3.798, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 163.548, "theta": -131.752, "eta_prime": 179.291, "theta_prime": -138.538, "eta_base": -128.890, "theta_base": -108.475, "v0": 0.127, "v1": -21.552, "v2": 33.575, "v3": -34.496, "v4": 21.718, "amplitude": 35.400, "phase_angle": 18.480, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.593, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 133.803, 183.668, 197.221 ], "x_axis": [ 0.985, 0.108, 0.133 ], "y_axis": [ 0.160, -0.300, -0.940 ], "z_axis": [ -0.062, 0.948, -0.313 ], "quaternion": [ 0.586, -0.806, -0.083, -0.022 ] } }, { "index": 29, "index_chain": 29, "chain_name": "A", "nt_resnum": 31, "nt_name": "C", "nt_code": "C", "nt_id": "///A/31", "linked_nts": [ "///A/30", "///A/32" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 170.849, "beta": -160.285, "gamma": 152.069, "delta": 81.888, "epsilon": -130.851, "zeta": -72.787, "epsilon_zeta": -58.064, "bb_type": "BI", "chi": 178.025, "glyco_bond": "anti", "C5prime_xyz": [ -1.171, 8.331, 1.813 ], "P_xyz": [ 1.084, 9.424, 1.090 ], "form": "A", "ssZp": 4.673, "Dp": 4.701, "splay_angle": 25.190, "splay_distance": 4.129, "splay_ratio": 0.225, "d22": 4.294, "d64": 4.679, "eta": 154.906, "theta": -143.686, "eta_prime": 172.059, "theta_prime": -142.993, "eta_base": -138.526, "theta_base": -117.968, "v0": 3.724, "v1": -25.332, "v2": 36.224, "v3": -35.036, "v4": 19.724, "amplitude": 37.174, "phase_angle": 12.983, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.098, "filter_rmsd": 0.066, "frame": { "rmsd": 0.007, "origin": [ 134.627, 187.373, 197.353 ], "x_axis": [ 0.877, -0.312, -0.365 ], "y_axis": [ -0.455, -0.299, -0.839 ], "z_axis": [ 0.153, 0.902, -0.404 ], "quaternion": [ 0.542, -0.803, 0.239, 0.066 ] } }, { "index": 30, "index_chain": 30, "chain_name": "A", "nt_resnum": 32, "nt_name": "C", "nt_code": "C", "nt_id": "///A/32", "linked_nts": [ "///A/31", "///A/33" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -52.652, "beta": 172.220, "gamma": 49.659, "delta": 81.562, "epsilon": -152.962, "zeta": -70.787, "epsilon_zeta": -82.176, "bb_type": "BI", "chi": -167.527, "glyco_bond": "anti", "C5prime_xyz": [ -1.667, 8.845, 0.870 ], "P_xyz": [ 0.702, 9.515, 1.732 ], "form": "A", "ssZp": 4.244, "Dp": 4.362, "splay_angle": 20.502, "splay_distance": 3.379, "splay_ratio": 0.180, "d22": 4.423, "d64": 4.180, "eta": 170.941, "theta": -147.261, "eta_prime": -170.472, "theta_prime": -138.979, "eta_base": -129.269, "theta_base": -119.903, "v0": -5.823, "v1": -16.528, "v2": 31.143, "v3": -35.419, "v4": 26.062, "amplitude": 35.244, "phase_angle": 27.913, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.742, "filter_rmsd": 0.060, "frame": { "rmsd": 0.010, "origin": [ 137.200, 190.596, 197.138 ], "x_axis": [ 0.429, -0.558, -0.710 ], "y_axis": [ -0.883, -0.093, -0.460 ], "z_axis": [ 0.190, 0.824, -0.533 ], "quaternion": [ -0.448, 0.717, -0.503, -0.181 ] } }, { "index": 31, "index_chain": 31, "chain_name": "A", "nt_resnum": 33, "nt_name": "U", "nt_code": "U", "nt_id": "///A/33", "linked_nts": [ "///A/32", "///A/34" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -60.498, "beta": -176.874, "gamma": 54.567, "delta": 142.035, "epsilon": -117.325, "zeta": -170.383, "epsilon_zeta": 53.058, "bb_type": "BII", "chi": -128.177, "glyco_bond": "anti", "C5prime_xyz": [ -2.052, 8.649, -0.837 ], "P_xyz": [ 0.238, 9.639, -0.044 ], "form": ".", "ssZp": 1.684, "Dp": 1.575, "splay_angle": 44.599, "splay_distance": 7.335, "splay_ratio": 0.381, "d22": 6.892, "d64": 7.283, "eta": -170.074, "theta": -152.516, "eta_prime": -145.744, "theta_prime": 172.568, "eta_base": -124.148, "theta_base": 127.312, "v0": -24.126, "v1": 35.939, "v2": -33.429, "v3": 20.298, "v4": 2.200, "amplitude": 36.103, "phase_angle": 157.809, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.921, "filter_rmsd": 0.099, "frame": { "rmsd": 0.010, "origin": [ 139.225, 193.042, 195.983 ], "x_axis": [ -0.096, -0.682, -0.725 ], "y_axis": [ -0.946, 0.289, -0.146 ], "z_axis": [ 0.309, 0.672, -0.673 ], "quaternion": [ 0.361, -0.567, 0.717, 0.183 ] } }, { "index": 32, "index_chain": 32, "chain_name": "A", "nt_resnum": 34, "nt_name": "U", "nt_code": "U", "nt_id": "///A/34", "linked_nts": [ "///A/33", "///A/35" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BI,non-stack,non-pair-contact,junction-loop", "alpha": 87.056, "beta": -164.685, "gamma": 152.130, "delta": 151.182, "epsilon": -130.329, "zeta": -79.811, "epsilon_zeta": -50.518, "bb_type": "BI", "chi": -155.557, "glyco_bond": "anti", "C5prime_xyz": [ -1.732, 8.557, 0.800 ], "P_xyz": [ 0.800, 9.181, 0.637 ], "form": ".", "ssZp": 1.156, "Dp": 1.427, "splay_angle": 83.053, "splay_distance": 13.131, "splay_ratio": 0.663, "d22": null, "d64": null, "eta": 112.152, "theta": -66.410, "eta_prime": 127.601, "theta_prime": -90.685, "eta_base": 101.146, "theta_base": -66.651, "v0": -18.797, "v1": 34.968, "v2": -36.918, "v3": 27.026, "v4": -5.386, "amplitude": 37.565, "phase_angle": 169.357, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 138.411, 195.154, 202.960 ], "x_axis": [ -0.668, -0.724, -0.170 ], "y_axis": [ -0.588, 0.654, -0.476 ], "z_axis": [ 0.456, -0.218, -0.863 ], "quaternion": [ 0.175, -0.367, 0.892, -0.195 ] } }, { "index": 33, "index_chain": 33, "chain_name": "A", "nt_resnum": 35, "nt_name": "G", "nt_code": "G", "nt_id": "///A/35", "linked_nts": [ "///A/34", "///A/36" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor", "alpha": 137.680, "beta": -146.443, "gamma": -178.824, "delta": 81.177, "epsilon": -117.764, "zeta": -52.977, "epsilon_zeta": -64.787, "bb_type": "--", "chi": -179.447, "glyco_bond": "anti", "C5prime_xyz": [ -1.374, 8.435, 1.647 ], "P_xyz": [ 0.269, 10.088, 0.472 ], "form": ".", "ssZp": 4.711, "Dp": 4.741, "splay_angle": 21.927, "splay_distance": 3.968, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 152.620, "theta": -139.518, "eta_prime": -162.040, "theta_prime": -146.478, "eta_base": -113.294, "theta_base": -124.485, "v0": 2.613, "v1": -24.769, "v2": 36.370, "v3": -35.856, "v4": 20.992, "amplitude": 37.609, "phase_angle": 14.748, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 139.290, 199.578, 190.628 ], "x_axis": [ -0.842, 0.476, -0.253 ], "y_axis": [ -0.040, 0.412, 0.910 ], "z_axis": [ 0.537, 0.777, -0.328 ], "quaternion": [ 0.246, 0.136, 0.804, 0.525 ] } }, { "index": 34, "index_chain": 34, "chain_name": "A", "nt_resnum": 36, "nt_name": "G", "nt_code": "G", "nt_id": "///A/36", "linked_nts": [ "///A/35", "///A/37" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -120.555, "beta": 124.736, "gamma": 137.469, "delta": 81.069, "epsilon": -130.945, "zeta": -73.363, "epsilon_zeta": -57.582, "bb_type": "BI", "chi": 173.093, "glyco_bond": "anti", "C5prime_xyz": [ -1.799, 8.413, 1.980 ], "P_xyz": [ -0.416, 10.344, 0.879 ], "form": "A", "ssZp": 4.453, "Dp": 4.556, "splay_angle": 23.875, "splay_distance": 3.897, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 166.702, "theta": -164.536, "eta_prime": -177.175, "theta_prime": -157.648, "eta_base": -137.331, "theta_base": -119.555, "v0": -1.967, "v1": -20.294, "v2": 33.571, "v3": -35.665, "v4": 23.737, "amplitude": 36.127, "phase_angle": 21.680, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 139.386, 201.672, 187.259 ], "x_axis": [ -0.852, 0.442, 0.280 ], "y_axis": [ 0.405, 0.218, 0.888 ], "z_axis": [ 0.332, 0.870, -0.365 ], "quaternion": [ 0.016, 0.271, 0.780, 0.563 ] } }, { "index": 35, "index_chain": 35, "chain_name": "A", "nt_resnum": 37, "nt_name": "C", "nt_code": "C", "nt_id": "///A/37", "linked_nts": [ "///A/36", "///A/38" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -57.325, "beta": 174.706, "gamma": 43.999, "delta": 81.251, "epsilon": -145.669, "zeta": -81.432, "epsilon_zeta": -64.238, "bb_type": "BI", "chi": -157.681, "glyco_bond": "anti", "C5prime_xyz": [ -1.545, 8.854, 0.361 ], "P_xyz": [ 0.910, 9.541, 0.910 ], "form": "A", "ssZp": 4.249, "Dp": 4.534, "splay_angle": 23.956, "splay_distance": 3.864, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 164.566, "theta": -150.256, "eta_prime": -178.262, "theta_prime": -146.437, "eta_base": -128.671, "theta_base": -116.736, "v0": -2.344, "v1": -20.215, "v2": 33.708, "v3": -36.035, "v4": 24.225, "amplitude": 36.413, "phase_angle": 22.225, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.715, "filter_rmsd": 0.058, "frame": { "rmsd": 0.009, "origin": [ 138.748, 204.858, 185.107 ], "x_axis": [ -0.361, 0.496, 0.790 ], "y_axis": [ 0.875, -0.115, 0.471 ], "z_axis": [ 0.324, 0.861, -0.392 ], "quaternion": [ -0.182, 0.535, 0.640, 0.520 ] } }, { "index": 36, "index_chain": 36, "chain_name": "A", "nt_resnum": 38, "nt_name": "A", "nt_code": "A", "nt_id": "///A/38", "linked_nts": [ "///A/37", "///A/39" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -53.120, "beta": 161.518, "gamma": 51.639, "delta": 82.121, "epsilon": -161.475, "zeta": -72.459, "epsilon_zeta": -89.016, "bb_type": "BI", "chi": -162.170, "glyco_bond": "anti", "C5prime_xyz": [ -1.611, 8.785, 0.640 ], "P_xyz": [ 0.935, 9.266, 0.961 ], "form": ".", "ssZp": 4.265, "Dp": 4.374, "splay_angle": 21.738, "splay_distance": 4.042, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 168.280, "theta": -119.835, "eta_prime": -175.715, "theta_prime": -133.306, "eta_base": -133.968, "theta_base": -112.708, "v0": -3.008, "v1": -18.975, "v2": 32.455, "v3": -35.135, "v4": 24.082, "amplitude": 35.367, "phase_angle": 23.412, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.799, "filter_rmsd": 0.044, "frame": { "rmsd": 0.010, "origin": [ 138.877, 208.568, 184.034 ], "x_axis": [ 0.081, 0.164, 0.983 ], "y_axis": [ 0.927, -0.374, -0.015 ], "z_axis": [ 0.365, 0.913, -0.182 ], "quaternion": [ -0.362, 0.640, 0.426, 0.527 ] } }, { "index": 37, "index_chain": 37, "chain_name": "A", "nt_resnum": 39, "nt_name": "C", "nt_code": "C", "nt_id": "///A/39", "linked_nts": [ "///A/38", "///A/40" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": 133.538, "beta": -160.717, "gamma": -162.216, "delta": 82.373, "epsilon": -144.864, "zeta": -82.903, "epsilon_zeta": -61.961, "bb_type": "BI", "chi": -176.224, "glyco_bond": "anti", "C5prime_xyz": [ -1.322, 8.533, 1.483 ], "P_xyz": [ -0.052, 10.635, 0.593 ], "form": "A", "ssZp": 4.565, "Dp": 4.597, "splay_angle": 24.871, "splay_distance": 3.895, "splay_ratio": 0.217, "d22": 4.690, "d64": 4.824, "eta": 169.016, "theta": 174.473, "eta_prime": -177.257, "theta_prime": -175.929, "eta_base": -133.502, "theta_base": -152.382, "v0": 1.324, "v1": -22.993, "v2": 34.719, "v3": -34.909, "v4": 21.193, "amplitude": 36.223, "phase_angle": 16.565, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.349, "filter_rmsd": 0.062, "frame": { "rmsd": 0.008, "origin": [ 138.137, 212.400, 185.086 ], "x_axis": [ 0.530, -0.038, 0.847 ], "y_axis": [ 0.787, -0.350, -0.508 ], "z_axis": [ 0.316, 0.936, -0.156 ], "quaternion": [ 0.506, -0.713, -0.262, -0.408 ] } }, { "index": 38, "index_chain": 38, "chain_name": "A", "nt_resnum": 40, "nt_name": "U", "nt_code": "U", "nt_id": "///A/40", "linked_nts": [ "///A/39", "///A/41" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -52.800, "beta": 168.401, "gamma": 47.134, "delta": 82.264, "epsilon": -148.796, "zeta": -71.065, "epsilon_zeta": -77.731, "bb_type": "BI", "chi": -168.358, "glyco_bond": "anti", "C5prime_xyz": [ -1.467, 8.642, 1.016 ], "P_xyz": [ 1.044, 9.006, 1.647 ], "form": "A", "ssZp": 4.488, "Dp": 4.567, "splay_angle": 21.330, "splay_distance": 3.472, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": 171.855, "theta": -141.977, "eta_prime": -176.946, "theta_prime": -141.738, "eta_base": -148.436, "theta_base": -118.074, "v0": 0.619, "v1": -22.380, "v2": 34.430, "v3": -35.036, "v4": 21.724, "amplitude": 36.136, "phase_angle": 17.672, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.775, "filter_rmsd": 0.103, "frame": { "rmsd": 0.006, "origin": [ 137.281, 216.199, 185.176 ], "x_axis": [ 0.818, -0.218, 0.532 ], "y_axis": [ 0.452, -0.329, -0.829 ], "z_axis": [ 0.356, 0.919, -0.171 ], "quaternion": [ 0.574, -0.761, -0.077, -0.292 ] } }, { "index": 39, "index_chain": 39, "chain_name": "A", "nt_resnum": 41, "nt_name": "A", "nt_code": "A", "nt_id": "///A/41", "linked_nts": [ "///A/40", "///A/42" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -58.327, "beta": -179.660, "gamma": 38.166, "delta": 80.220, "epsilon": -163.826, "zeta": -83.298, "epsilon_zeta": -80.528, "bb_type": "BI", "chi": -159.941, "glyco_bond": "anti", "C5prime_xyz": [ -1.371, 8.765, 0.528 ], "P_xyz": [ 1.026, 9.391, 1.362 ], "form": "A", "ssZp": 4.343, "Dp": 4.472, "splay_angle": 22.880, "splay_distance": 3.835, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 163.888, "theta": -135.698, "eta_prime": 176.461, "theta_prime": -140.545, "eta_base": -144.911, "theta_base": -114.957, "v0": -0.404, "v1": -22.056, "v2": 34.914, "v3": -36.128, "v4": 23.067, "amplitude": 36.984, "phase_angle": 19.258, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.586, "filter_rmsd": 0.044, "frame": { "rmsd": 0.009, "origin": [ 138.154, 219.314, 186.439 ], "x_axis": [ 0.832, -0.554, 0.009 ], "y_axis": [ -0.063, -0.111, -0.992 ], "z_axis": [ 0.551, 0.825, -0.127 ], "quaternion": [ 0.631, -0.719, 0.215, -0.195 ] } }, { "index": 40, "index_chain": 40, "chain_name": "A", "nt_resnum": 42, "nt_name": "G", "nt_code": "G", "nt_id": "///A/42", "linked_nts": [ "///A/41", "///A/43" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 151.556, "beta": -148.505, "gamma": 171.900, "delta": 81.387, "epsilon": -142.672, "zeta": -90.616, "epsilon_zeta": -52.056, "bb_type": "BI", "chi": 175.893, "glyco_bond": "anti", "C5prime_xyz": [ -1.437, 8.266, 1.905 ], "P_xyz": [ 0.445, 9.800, 0.953 ], "form": "A", "ssZp": 4.678, "Dp": 4.688, "splay_angle": 22.541, "splay_distance": 3.890, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 160.644, "theta": -139.434, "eta_prime": 178.674, "theta_prime": -147.510, "eta_base": -135.794, "theta_base": -122.631, "v0": 4.170, "v1": -25.723, "v2": 36.426, "v3": -35.034, "v4": 19.472, "amplitude": 37.294, "phase_angle": 12.383, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.729, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 141.004, 221.552, 187.696 ], "x_axis": [ 0.657, -0.593, -0.465 ], "y_axis": [ -0.450, 0.186, -0.874 ], "z_axis": [ 0.605, 0.783, -0.144 ], "quaternion": [ 0.652, -0.635, 0.410, -0.055 ] } }, { "index": 41, "index_chain": 41, "chain_name": "A", "nt_resnum": 43, "nt_name": "G", "nt_code": "G", "nt_id": "///A/43", "linked_nts": [ "///A/42", "///A/44" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": 157.905, "beta": -147.393, "gamma": 171.560, "delta": 82.336, "epsilon": -114.277, "zeta": -87.478, "epsilon_zeta": -26.799, "bb_type": "--", "chi": 176.964, "glyco_bond": "anti", "C5prime_xyz": [ -1.591, 8.388, 1.832 ], "P_xyz": [ 0.375, 9.855, 0.962 ], "form": ".", "ssZp": 4.580, "Dp": 4.634, "splay_angle": 28.115, "splay_distance": 4.392, "splay_ratio": 0.243, "d22": null, "d64": null, "eta": 165.988, "theta": -143.069, "eta_prime": -177.569, "theta_prime": -136.412, "eta_base": -134.904, "theta_base": -81.198, "v0": 0.593, "v1": -22.180, "v2": 34.200, "v3": -34.859, "v4": 21.618, "amplitude": 35.911, "phase_angle": 17.755, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.483, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 144.712, 222.265, 188.630 ], "x_axis": [ 0.264, -0.401, -0.877 ], "y_axis": [ -0.675, 0.573, -0.465 ], "z_axis": [ 0.689, 0.715, -0.119 ], "quaternion": [ 0.656, -0.450, 0.598, 0.104 ] } }, { "index": 42, "index_chain": 42, "chain_name": "A", "nt_resnum": 44, "nt_name": "A", "nt_code": "A", "nt_id": "///A/44", "linked_nts": [ "///A/43", "///A/45" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge", "alpha": -28.345, "beta": 148.498, "gamma": 33.698, "delta": 80.423, "epsilon": -164.485, "zeta": -81.197, "epsilon_zeta": -83.288, "bb_type": "BI", "chi": -151.184, "glyco_bond": "anti", "C5prime_xyz": [ -1.413, 8.780, 0.021 ], "P_xyz": [ 1.172, 9.032, 0.217 ], "form": "A", "ssZp": 4.113, "Dp": 4.442, "splay_angle": 19.822, "splay_distance": 3.506, "splay_ratio": 0.181, "d22": null, "d64": null, "eta": 158.920, "theta": -125.861, "eta_prime": -173.520, "theta_prime": -134.089, "eta_base": -99.465, "theta_base": -118.896, "v0": -0.644, "v1": -21.614, "v2": 34.491, "v3": -35.877, "v4": 23.038, "amplitude": 36.629, "phase_angle": 19.670, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.030, "filter_rmsd": 0.040, "frame": { "rmsd": 0.008, "origin": [ 147.194, 223.767, 185.332 ], "x_axis": [ -0.398, 0.254, -0.882 ], "y_axis": [ -0.504, 0.742, 0.442 ], "z_axis": [ 0.766, 0.620, -0.167 ], "quaternion": [ 0.542, -0.082, 0.759, 0.350 ] } }, { "index": 43, "index_chain": 43, "chain_name": "A", "nt_resnum": 45, "nt_name": "G", "nt_code": "G", "nt_id": "///A/45", "linked_nts": [ "///A/44", "///A/46" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BII,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,cap-acceptor,splayed-apart", "alpha": 155.134, "beta": -145.778, "gamma": 174.468, "delta": 83.987, "epsilon": -92.029, "zeta": 130.452, "epsilon_zeta": 137.519, "bb_type": "BII", "chi": -170.473, "glyco_bond": "anti", "C5prime_xyz": [ -1.903, 8.810, 1.043 ], "P_xyz": [ -0.152, 10.231, -0.248 ], "form": ".", "ssZp": 3.908, "Dp": 4.206, "splay_angle": 117.251, "splay_distance": 16.456, "splay_ratio": 0.854, "d22": null, "d64": null, "eta": -178.223, "theta": 85.193, "eta_prime": -167.925, "theta_prime": 98.203, "eta_base": -139.156, "theta_base": 131.982, "v0": -7.649, "v1": -13.914, "v2": 28.781, "v3": -34.032, "v4": 26.408, "amplitude": 33.737, "phase_angle": 31.451, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.751, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 149.704, 224.615, 183.036 ], "x_axis": [ -0.708, 0.412, -0.573 ], "y_axis": [ -0.193, 0.668, 0.719 ], "z_axis": [ 0.679, 0.620, -0.393 ], "quaternion": [ 0.376, 0.066, 0.832, 0.402 ] } }, { "index": 44, "index_chain": 44, "chain_name": "A", "nt_resnum": 46, "nt_name": "C", "nt_code": "C", "nt_id": "///A/46", "linked_nts": [ "///A/45", "///A/47" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart", "alpha": -65.852, "beta": 128.620, "gamma": 94.937, "delta": 80.544, "epsilon": -161.258, "zeta": -70.838, "epsilon_zeta": -90.420, "bb_type": "BI", "chi": -160.981, "glyco_bond": "anti", "C5prime_xyz": [ -1.438, 8.823, 0.546 ], "P_xyz": [ 0.447, 9.275, -1.222 ], "form": "A", "ssZp": 4.408, "Dp": 4.517, "splay_angle": 24.475, "splay_distance": 3.852, "splay_ratio": 0.213, "d22": 4.486, "d64": 4.638, "eta": -132.072, "theta": -154.489, "eta_prime": -119.559, "theta_prime": -166.108, "eta_base": -136.116, "theta_base": -147.650, "v0": -0.072, "v1": -22.927, "v2": 35.861, "v3": -36.841, "v4": 23.256, "amplitude": 37.847, "phase_angle": 18.646, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.059, "frame": { "rmsd": 0.006, "origin": [ 160.740, 227.690, 194.849 ], "x_axis": [ 0.606, 0.510, -0.610 ], "y_axis": [ -0.795, 0.415, -0.442 ], "z_axis": [ 0.028, 0.753, 0.657 ], "quaternion": [ 0.818, -0.365, 0.195, 0.399 ] } }, { "index": 45, "index_chain": 45, "chain_name": "A", "nt_resnum": 47, "nt_name": "C", "nt_code": "C", "nt_id": "///A/47", "linked_nts": [ "///A/46", "///A/48" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop", "alpha": -72.177, "beta": 175.992, "gamma": 59.536, "delta": 79.782, "epsilon": -156.025, "zeta": -69.316, "epsilon_zeta": -86.709, "bb_type": "BI", "chi": -165.973, "glyco_bond": "anti", "C5prime_xyz": [ -1.319, 8.689, 0.860 ], "P_xyz": [ 1.265, 9.090, 0.998 ], "form": "A", "ssZp": 4.562, "Dp": 4.622, "splay_angle": 24.323, "splay_distance": 4.067, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": 167.918, "theta": -120.155, "eta_prime": 179.583, "theta_prime": -129.207, "eta_base": -143.591, "theta_base": -96.706, "v0": 3.231, "v1": -26.077, "v2": 37.780, "v3": -36.937, "v4": 21.227, "amplitude": 38.926, "phase_angle": 13.938, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.832, "filter_rmsd": 0.061, "frame": { "rmsd": 0.006, "origin": [ 162.188, 229.827, 197.709 ], "x_axis": [ 0.139, 0.613, -0.778 ], "y_axis": [ -0.990, 0.108, -0.092 ], "z_axis": [ 0.028, 0.783, 0.622 ], "quaternion": [ 0.683, -0.320, 0.295, 0.586 ] } }, { "index": 46, "index_chain": 46, "chain_name": "A", "nt_resnum": 48, "nt_name": "G", "nt_code": "G", "nt_id": "///A/48", "linked_nts": [ "///A/47", "///A/49" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,junction-loop", "alpha": 170.578, "beta": -164.306, "gamma": 156.243, "delta": 79.941, "epsilon": -113.211, "zeta": -163.272, "epsilon_zeta": 50.062, "bb_type": "BII", "chi": -179.185, "glyco_bond": "anti", "C5prime_xyz": [ -1.258, 8.350, 1.633 ], "P_xyz": [ 0.671, 9.791, 0.624 ], "form": ".", "ssZp": 4.766, "Dp": 4.821, "splay_angle": 47.339, "splay_distance": 6.517, "splay_ratio": 0.407, "d22": null, "d64": null, "eta": 156.564, "theta": 155.006, "eta_prime": 175.471, "theta_prime": 169.361, "eta_base": -128.855, "theta_base": 130.248, "v0": 6.082, "v1": -28.304, "v2": 38.691, "v3": -36.211, "v4": 18.979, "amplitude": 39.277, "phase_angle": 9.910, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.223, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 163.884, 233.519, 197.537 ], "x_axis": [ -0.531, 0.420, -0.735 ], "y_axis": [ -0.845, -0.204, 0.494 ], "z_axis": [ 0.058, 0.884, 0.464 ], "quaternion": [ 0.427, -0.229, 0.465, 0.741 ] } }, { "index": 47, "index_chain": 47, "chain_name": "A", "nt_resnum": 49, "nt_name": "A", "nt_code": "A", "nt_id": "///A/49", "linked_nts": [ "///A/48", "///A/50" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart", "alpha": 36.602, "beta": 154.018, "gamma": -55.727, "delta": 151.594, "epsilon": -114.203, "zeta": 66.055, "epsilon_zeta": 179.742, "bb_type": "--", "chi": 60.264, "glyco_bond": "syn", "C5prime_xyz": [ -5.163, 3.640, 1.186 ], "P_xyz": [ -7.128, 2.102, 0.419 ], "form": ".", "ssZp": -1.054, "Dp": 1.131, "splay_angle": 129.648, "splay_distance": 17.421, "splay_ratio": 0.905, "d22": null, "d64": null, "eta": -170.181, "theta": 75.608, "eta_prime": 173.791, "theta_prime": 38.708, "eta_base": 126.326, "theta_base": -16.929, "v0": -18.828, "v1": 34.989, "v2": -36.913, "v3": 26.992, "v4": -5.334, "amplitude": 37.568, "phase_angle": 169.288, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.011, "origin": [ 166.563, 232.133, 203.314 ], "x_axis": [ 0.950, -0.309, 0.034 ], "y_axis": [ 0.162, 0.584, 0.796 ], "z_axis": [ -0.266, -0.751, 0.605 ], "quaternion": [ 0.886, 0.436, -0.084, -0.133 ] } }, { "index": 48, "index_chain": 48, "chain_name": "A", "nt_resnum": 50, "nt_name": "U", "nt_code": "U", "nt_id": "///A/50", "linked_nts": [ "///A/49", "///A/51" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": 71.346, "beta": 162.144, "gamma": 65.163, "delta": 144.377, "epsilon": -156.832, "zeta": 105.549, "epsilon_zeta": 97.619, "bb_type": "--", "chi": -134.010, "glyco_bond": "anti", "C5prime_xyz": [ -2.103, 8.723, -0.532 ], "P_xyz": [ 0.377, 9.367, -0.015 ], "form": ".", "ssZp": 1.921, "Dp": 2.045, "splay_angle": 116.005, "splay_distance": 17.162, "splay_ratio": 0.849, "d22": null, "d64": null, "eta": -31.952, "theta": 58.099, "eta_prime": 9.431, "theta_prime": 11.094, "eta_base": 61.764, "theta_base": 7.541, "v0": -24.354, "v1": 37.261, "v2": -35.273, "v3": 22.113, "v4": 1.178, "amplitude": 37.668, "phase_angle": 159.458, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.512, "filter_rmsd": 0.102, "frame": { "rmsd": 0.006, "origin": [ 153.559, 242.893, 207.629 ], "x_axis": [ 0.417, 0.774, -0.477 ], "y_axis": [ 0.902, -0.417, 0.112 ], "z_axis": [ -0.112, -0.477, -0.872 ], "quaternion": [ 0.179, 0.823, 0.509, -0.179 ] } }, { "index": 49, "index_chain": 49, "chain_name": "A", "nt_resnum": 51, "nt_name": "G", "nt_code": "G", "nt_id": "///A/51", "linked_nts": [ "///A/50", "///A/52" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate,splayed-apart", "alpha": -53.636, "beta": -90.536, "gamma": -93.483, "delta": 146.836, "epsilon": -156.887, "zeta": 161.862, "epsilon_zeta": 41.252, "bb_type": "--", "chi": -139.158, "glyco_bond": "anti", "C5prime_xyz": [ -1.242, 8.562, -0.159 ], "P_xyz": [ -1.467, 10.666, -1.700 ], "form": ".", "ssZp": 2.303, "Dp": 2.187, "splay_angle": 82.897, "splay_distance": 12.047, "splay_ratio": 0.664, "d22": null, "d64": null, "eta": 175.181, "theta": 58.697, "eta_prime": -172.649, "theta_prime": 96.133, "eta_base": -163.148, "theta_base": 138.017, "v0": -14.318, "v1": 28.868, "v2": -31.478, "v3": 24.052, "v4": -6.302, "amplitude": 31.753, "phase_angle": 172.455, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 167.790, 233.949, 211.096 ], "x_axis": [ 0.070, 0.697, 0.714 ], "y_axis": [ -0.997, 0.030, 0.068 ], "z_axis": [ 0.026, -0.717, 0.697 ], "quaternion": [ 0.670, 0.293, -0.257, 0.632 ] } }, { "index": 50, "index_chain": 50, "chain_name": "A", "nt_resnum": 52, "nt_name": "A", "nt_code": "A", "nt_id": "///A/52", "linked_nts": [ "///A/51", "///A/53" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate", "alpha": -64.650, "beta": 164.198, "gamma": 63.681, "delta": 88.329, "epsilon": -173.104, "zeta": -78.857, "epsilon_zeta": -94.247, "bb_type": "BI", "chi": -177.127, "glyco_bond": "anti", "C5prime_xyz": [ -1.238, 8.299, 1.590 ], "P_xyz": [ 1.358, 8.159, 1.913 ], "form": "A", "ssZp": 4.228, "Dp": 4.329, "splay_angle": 23.910, "splay_distance": 3.564, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": -157.780, "theta": -128.411, "eta_prime": -169.236, "theta_prime": -133.896, "eta_base": -171.636, "theta_base": -106.673, "v0": 4.792, "v1": -23.295, "v2": 31.873, "v3": -30.037, "v4": 15.994, "amplitude": 32.402, "phase_angle": 10.367, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "#a", "suiteness": 0.285, "filter_rmsd": 0.043, "frame": { "rmsd": 0.012, "origin": [ 164.999, 224.737, 203.852 ], "x_axis": [ 0.660, 0.195, 0.726 ], "y_axis": [ -0.651, 0.631, 0.421 ], "z_axis": [ -0.376, -0.750, 0.544 ], "quaternion": [ 0.842, 0.348, -0.327, 0.251 ] } }, { "index": 51, "index_chain": 51, "chain_name": "A", "nt_resnum": 53, "nt_name": "A", "nt_code": "A", "nt_id": "///A/53", "linked_nts": [ "///A/52", "///A/54" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -159.356, "beta": -131.846, "gamma": 112.833, "delta": 83.875, "epsilon": -124.713, "zeta": -63.069, "epsilon_zeta": -61.644, "bb_type": "--", "chi": -170.656, "glyco_bond": "anti", "C5prime_xyz": [ -1.556, 8.596, 1.154 ], "P_xyz": [ 1.058, 8.498, 1.077 ], "form": ".", "ssZp": 4.452, "Dp": 4.597, "splay_angle": 39.553, "splay_distance": 6.293, "splay_ratio": 0.339, "d22": null, "d64": null, "eta": 163.894, "theta": -106.547, "eta_prime": 179.343, "theta_prime": -106.654, "eta_base": -135.547, "theta_base": -70.777, "v0": -0.209, "v1": -20.997, "v2": 32.956, "v3": -34.023, "v4": 21.619, "amplitude": 34.847, "phase_angle": 18.965, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.012, "origin": [ 164.715, 221.600, 205.518 ], "x_axis": [ 0.081, 0.584, 0.808 ], "y_axis": [ -0.916, 0.364, -0.171 ], "z_axis": [ -0.394, -0.726, 0.564 ], "quaternion": [ 0.709, 0.196, -0.424, 0.529 ] } }, { "index": 52, "index_chain": 52, "chain_name": "A", "nt_resnum": 54, "nt_name": "G", "nt_code": "G", "nt_id": "///A/54", "linked_nts": [ "///A/53", "///A/55" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor", "alpha": -58.554, "beta": 162.612, "gamma": 60.297, "delta": 79.208, "epsilon": -148.866, "zeta": -40.909, "epsilon_zeta": -107.957, "bb_type": "BI", "chi": -160.916, "glyco_bond": "anti", "C5prime_xyz": [ -1.614, 8.825, 0.553 ], "P_xyz": [ 0.930, 9.397, 0.387 ], "form": ".", "ssZp": 4.395, "Dp": 4.586, "splay_angle": 23.750, "splay_distance": 4.324, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": 163.929, "theta": -124.445, "eta_prime": -164.745, "theta_prime": -136.192, "eta_base": -99.590, "theta_base": -124.216, "v0": -0.689, "v1": -22.632, "v2": 36.076, "v3": -37.455, "v4": 24.039, "amplitude": 38.297, "phase_angle": 19.607, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.624, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 161.826, 221.435, 211.106 ], "x_axis": [ -0.735, 0.635, 0.237 ], "y_axis": [ -0.517, -0.298, -0.803 ], "z_axis": [ -0.439, -0.712, 0.547 ], "quaternion": [ 0.359, -0.063, -0.471, 0.803 ] } }, { "index": 53, "index_chain": 53, "chain_name": "A", "nt_resnum": 55, "nt_name": "G", "nt_code": "G", "nt_id": "///A/55", "linked_nts": [ "///A/54", "///A/56" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -137.709, "beta": 131.848, "gamma": 149.535, "delta": 82.314, "epsilon": -138.545, "zeta": -79.266, "epsilon_zeta": -59.279, "bb_type": "BI", "chi": 177.450, "glyco_bond": "anti", "C5prime_xyz": [ -1.659, 8.399, 1.796 ], "P_xyz": [ -0.650, 10.546, 0.682 ], "form": "A", "ssZp": 4.583, "Dp": 4.620, "splay_angle": 23.787, "splay_distance": 3.664, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 176.739, "theta": 178.846, "eta_prime": -172.404, "theta_prime": -170.520, "eta_base": -140.027, "theta_base": -132.003, "v0": 0.919, "v1": -22.541, "v2": 34.312, "v3": -34.783, "v4": 21.372, "amplitude": 35.919, "phase_angle": 17.203, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 160.506, 220.654, 215.149 ], "x_axis": [ -0.826, 0.548, -0.133 ], "y_axis": [ -0.221, -0.532, -0.817 ], "z_axis": [ -0.519, -0.645, 0.561 ], "quaternion": [ 0.225, -0.191, -0.428, 0.854 ] } }, { "index": 54, "index_chain": 54, "chain_name": "A", "nt_resnum": 56, "nt_name": "A", "nt_code": "A", "nt_id": "///A/56", "linked_nts": [ "///A/55", "///A/57" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,cap-donor", "alpha": -63.423, "beta": 170.610, "gamma": 53.955, "delta": 84.078, "epsilon": -149.723, "zeta": -61.495, "epsilon_zeta": -88.229, "bb_type": "BI", "chi": -166.468, "glyco_bond": "anti", "C5prime_xyz": [ -1.365, 8.609, 0.943 ], "P_xyz": [ 1.201, 8.862, 1.381 ], "form": "A", "ssZp": 4.460, "Dp": 4.560, "splay_angle": 23.862, "splay_distance": 3.782, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 167.502, "theta": -131.877, "eta_prime": -177.303, "theta_prime": -131.549, "eta_base": -130.161, "theta_base": -90.069, "v0": 2.400, "v1": -23.572, "v2": 34.577, "v3": -34.166, "v4": 20.054, "amplitude": 35.775, "phase_angle": 14.866, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.903, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 158.485, 219.767, 218.074 ], "x_axis": [ -0.781, 0.077, -0.619 ], "y_axis": [ 0.360, -0.754, -0.549 ], "z_axis": [ -0.510, -0.652, 0.562 ], "quaternion": [ -0.080, -0.321, -0.341, 0.880 ] } }, { "index": 55, "index_chain": 55, "chain_name": "A", "nt_resnum": 57, "nt_name": "C", "nt_code": "C", "nt_id": "///A/57", "linked_nts": [ "///A/56", "///A/58" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack", "alpha": -71.788, "beta": 172.022, "gamma": 61.097, "delta": 82.372, "epsilon": -160.553, "zeta": -69.918, "epsilon_zeta": -90.635, "bb_type": "BI", "chi": -161.093, "glyco_bond": "anti", "C5prime_xyz": [ -1.304, 8.792, 0.576 ], "P_xyz": [ 1.281, 9.199, 0.691 ], "form": "A", "ssZp": 4.336, "Dp": 4.459, "splay_angle": 20.248, "splay_distance": 3.508, "splay_ratio": 0.184, "d22": null, "d64": null, "eta": 165.095, "theta": -122.073, "eta_prime": -172.432, "theta_prime": -135.081, "eta_base": -109.705, "theta_base": -111.858, "v0": -0.433, "v1": -21.273, "v2": 33.594, "v3": -34.765, "v4": 22.251, "amplitude": 35.591, "phase_angle": 19.285, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.835, "filter_rmsd": 0.060, "frame": { "rmsd": 0.009, "origin": [ 155.053, 218.324, 218.737 ], "x_axis": [ -0.296, -0.475, -0.829 ], "y_axis": [ 0.765, -0.638, 0.092 ], "z_axis": [ -0.573, -0.607, 0.552 ], "quaternion": [ -0.393, -0.445, -0.163, 0.788 ] } }, { "index": 56, "index_chain": 56, "chain_name": "A", "nt_resnum": 58, "nt_name": "G", "nt_code": "G", "nt_id": "///A/58", "linked_nts": [ "///A/57", "///A/59" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate", "alpha": 162.232, "beta": -167.137, "gamma": 158.208, "delta": 74.441, "epsilon": 91.509, "zeta": 71.636, "epsilon_zeta": 19.873, "bb_type": "--", "chi": -178.929, "glyco_bond": "anti", "C5prime_xyz": [ -1.530, 8.433, 1.624 ], "P_xyz": [ 0.308, 10.033, 0.687 ], "form": "A", "ssZp": 3.363, "Dp": 3.464, "splay_angle": 22.811, "splay_distance": 3.735, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": -174.836, "theta": -161.772, "eta_prime": -165.730, "theta_prime": -154.496, "eta_base": -122.843, "theta_base": -127.357, "v0": 4.586, "v1": -27.386, "v2": 38.758, "v3": -37.189, "v4": 20.601, "amplitude": 39.656, "phase_angle": 12.213, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.297, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 151.830, 216.956, 218.957 ], "x_axis": [ 0.285, -0.579, -0.764 ], "y_axis": [ 0.751, -0.361, 0.554 ], "z_axis": [ -0.596, -0.731, 0.332 ], "quaternion": [ 0.560, 0.573, 0.075, -0.593 ] } }, { "index": 57, "index_chain": 57, "chain_name": "A", "nt_resnum": 59, "nt_name": "G", "nt_code": "G", "nt_id": "///A/59", "linked_nts": [ "///A/58", "///A/60" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop,cap-donor,phosphate", "alpha": -157.434, "beta": -175.608, "gamma": 53.483, "delta": 83.119, "epsilon": -139.253, "zeta": -87.668, "epsilon_zeta": -51.585, "bb_type": "BI", "chi": -151.095, "glyco_bond": "anti", "C5prime_xyz": [ -1.649, 8.837, -0.004 ], "P_xyz": [ 0.826, 9.588, 0.328 ], "form": ".", "ssZp": 4.002, "Dp": 4.534, "splay_angle": 44.142, "splay_distance": 7.195, "splay_ratio": 0.376, "d22": null, "d64": null, "eta": 147.450, "theta": -155.552, "eta_prime": 169.561, "theta_prime": -143.160, "eta_base": -152.226, "theta_base": -135.099, "v0": -1.796, "v1": -20.021, "v2": 32.871, "v3": -34.889, "v4": 23.149, "amplitude": 35.325, "phase_angle": 21.481, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 148.536, 215.224, 219.263 ], "x_axis": [ 0.668, -0.688, -0.284 ], "y_axis": [ 0.455, 0.076, 0.887 ], "z_axis": [ -0.589, -0.722, 0.364 ], "quaternion": [ 0.726, 0.554, -0.105, -0.394 ] } }, { "index": 58, "index_chain": 58, "chain_name": "A", "nt_resnum": 60, "nt_name": "G", "nt_code": "G", "nt_id": "///A/60", "linked_nts": [ "///A/59", "///A/61" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,junction-loop,kissing-loop", "alpha": -41.649, "beta": -159.921, "gamma": 53.117, "delta": 145.173, "epsilon": -113.684, "zeta": -84.174, "epsilon_zeta": -29.509, "bb_type": "--", "chi": -87.803, "glyco_bond": "anti", "C5prime_xyz": [ -2.788, 7.694, -2.542 ], "P_xyz": [ -0.664, 9.149, -3.007 ], "form": ".", "ssZp": 1.068, "Dp": 1.290, "splay_angle": 75.261, "splay_distance": 12.041, "splay_ratio": 0.611, "d22": null, "d64": null, "eta": -137.723, "theta": -44.572, "eta_prime": -126.636, "theta_prime": -109.055, "eta_base": -134.485, "theta_base": -134.821, "v0": -24.738, "v1": 37.948, "v2": -35.908, "v3": 22.512, "v4": 1.175, "amplitude": 38.339, "phase_angle": 159.486, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.532, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 143.758, 210.278, 221.378 ], "x_axis": [ 0.762, -0.637, -0.116 ], "y_axis": [ 0.325, 0.223, 0.919 ], "z_axis": [ -0.560, -0.738, 0.377 ], "quaternion": [ 0.768, 0.539, -0.145, -0.313 ] } }, { "index": 59, "index_chain": 59, "chain_name": "A", "nt_resnum": 61, "nt_name": "A", "nt_code": "A", "nt_id": "///A/61", "linked_nts": [ "///A/60", "///A/62" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,kissing-loop", "alpha": 144.192, "beta": -178.603, "gamma": 48.255, "delta": 82.874, "epsilon": -152.151, "zeta": -72.430, "epsilon_zeta": -79.720, "bb_type": "BI", "chi": -156.616, "glyco_bond": "anti", "C5prime_xyz": [ -1.501, 8.747, 0.315 ], "P_xyz": [ 0.980, 9.404, 0.812 ], "form": "A", "ssZp": 4.274, "Dp": 4.531, "splay_angle": 25.119, "splay_distance": 4.078, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": -4.611, "theta": -147.192, "eta_prime": 52.933, "theta_prime": -144.136, "eta_base": 83.328, "theta_base": -117.230, "v0": -0.315, "v1": -21.138, "v2": 33.206, "v3": -34.349, "v4": 21.881, "amplitude": 35.143, "phase_angle": 19.109, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2g", "suiteness": 0.203, "filter_rmsd": 0.038, "frame": { "rmsd": 0.008, "origin": [ 136.721, 206.846, 230.525 ], "x_axis": [ -0.363, 0.315, -0.877 ], "y_axis": [ 0.501, 0.859, 0.102 ], "z_axis": [ 0.786, -0.402, -0.470 ], "quaternion": [ 0.507, 0.249, 0.820, -0.092 ] } }, { "index": 60, "index_chain": 60, "chain_name": "A", "nt_resnum": 62, "nt_name": "C", "nt_code": "C", "nt_id": "///A/62", "linked_nts": [ "///A/61", "///A/63" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop,junction-loop,kissing-loop,phosphate", "alpha": -61.833, "beta": 166.582, "gamma": 59.946, "delta": 80.650, "epsilon": -164.883, "zeta": 41.453, "epsilon_zeta": 153.664, "bb_type": "--", "chi": -157.158, "glyco_bond": "anti", "C5prime_xyz": [ -1.694, 8.858, 0.311 ], "P_xyz": [ 0.825, 9.504, 0.126 ], "form": ".", "ssZp": 4.301, "Dp": 4.451, "splay_angle": 59.998, "splay_distance": 8.809, "splay_ratio": 0.501, "d22": null, "d64": null, "eta": 171.627, "theta": -14.750, "eta_prime": -170.555, "theta_prime": -109.700, "eta_base": -130.578, "theta_base": -151.880, "v0": -2.603, "v1": -20.186, "v2": 33.907, "v3": -36.410, "v4": 24.630, "amplitude": 36.730, "phase_angle": 22.609, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.904, "filter_rmsd": 0.060, "frame": { "rmsd": 0.006, "origin": [ 138.723, 204.703, 227.692 ], "x_axis": [ -0.057, 0.712, -0.699 ], "y_axis": [ 0.647, 0.560, 0.517 ], "z_axis": [ 0.760, -0.423, -0.493 ], "quaternion": [ 0.502, 0.468, 0.726, 0.032 ] } }, { "index": 61, "index_chain": 61, "chain_name": "A", "nt_resnum": 63, "nt_name": "G", "nt_code": "G", "nt_id": "///A/63", "linked_nts": [ "///A/62", "///A/64" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-pair-contact,hairpin-loop,internal-loop,kissing-loop", "alpha": 124.676, "beta": 67.645, "gamma": 124.303, "delta": 79.289, "epsilon": -159.216, "zeta": -66.910, "epsilon_zeta": -92.306, "bb_type": "BI", "chi": -122.665, "glyco_bond": "anti", "C5prime_xyz": [ -1.717, 8.498, -1.646 ], "P_xyz": [ -2.323, 7.225, -3.869 ], "form": ".", "ssZp": 2.859, "Dp": 4.563, "splay_angle": 37.496, "splay_distance": 5.983, "splay_ratio": 0.324, "d22": null, "d64": null, "eta": -5.934, "theta": -160.875, "eta_prime": 100.756, "theta_prime": -179.573, "eta_base": 109.887, "theta_base": -154.796, "v0": 1.001, "v1": -23.768, "v2": 36.146, "v3": -36.490, "v4": 22.410, "amplitude": 37.809, "phase_angle": 17.056, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 145.055, 198.967, 225.547 ], "x_axis": [ -0.744, 0.403, -0.533 ], "y_axis": [ 0.328, 0.915, 0.234 ], "z_axis": [ 0.582, -0.001, -0.813 ], "quaternion": [ 0.299, 0.196, 0.932, 0.063 ] } }, { "index": 62, "index_chain": 62, "chain_name": "A", "nt_resnum": 64, "nt_name": "A", "nt_code": "A", "nt_id": "///A/64", "linked_nts": [ "///A/63", "///A/65" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop,kissing-loop", "alpha": -68.193, "beta": 178.965, "gamma": 47.643, "delta": 78.557, "epsilon": -135.120, "zeta": -69.802, "epsilon_zeta": -65.318, "bb_type": "BI", "chi": 168.277, "glyco_bond": "anti", "C5prime_xyz": [ -1.598, 8.085, 2.250 ], "P_xyz": [ 0.709, 8.133, 3.500 ], "form": "A", "ssZp": 4.726, "Dp": 4.754, "splay_angle": 29.071, "splay_distance": 4.328, "splay_ratio": 0.256, "d22": null, "d64": null, "eta": 165.294, "theta": -135.112, "eta_prime": 174.591, "theta_prime": -128.245, "eta_base": -143.580, "theta_base": -85.303, "v0": 3.207, "v1": -26.310, "v2": 38.238, "v3": -37.383, "v4": 21.523, "amplitude": 39.412, "phase_angle": 14.022, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.863, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 146.297, 201.647, 220.344 ], "x_axis": [ -0.816, 0.325, 0.478 ], "y_axis": [ 0.551, 0.186, 0.814 ], "z_axis": [ 0.175, 0.927, -0.331 ], "quaternion": [ -0.099, 0.286, 0.764, 0.570 ] } }, { "index": 63, "index_chain": 63, "chain_name": "A", "nt_resnum": 65, "nt_name": "A", "nt_code": "A", "nt_id": "///A/65", "linked_nts": [ "///A/64", "///A/66" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,internal-loop,kissing-loop", "alpha": -69.789, "beta": -178.637, "gamma": 57.870, "delta": 84.982, "epsilon": -157.411, "zeta": -68.325, "epsilon_zeta": -89.086, "bb_type": "BI", "chi": -175.611, "glyco_bond": "anti", "C5prime_xyz": [ -1.313, 8.424, 1.481 ], "P_xyz": [ 1.159, 8.500, 2.332 ], "form": "A", "ssZp": 4.444, "Dp": 4.501, "splay_angle": 26.791, "splay_distance": 4.093, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 168.314, "theta": -144.143, "eta_prime": -172.917, "theta_prime": -142.876, "eta_base": -113.522, "theta_base": -117.537, "v0": 3.057, "v1": -23.580, "v2": 33.911, "v3": -33.122, "v4": 18.988, "amplitude": 34.906, "phase_angle": 13.716, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.844, "filter_rmsd": 0.042, "frame": { "rmsd": 0.012, "origin": [ 144.475, 205.398, 219.186 ], "x_axis": [ -0.126, 0.263, 0.956 ], "y_axis": [ 0.952, -0.240, 0.192 ], "z_axis": [ 0.280, 0.934, -0.220 ], "quaternion": [ -0.322, 0.578, 0.526, 0.535 ] } }, { "index": 64, "index_chain": 64, "chain_name": "A", "nt_resnum": 66, "nt_name": "C", "nt_code": "C", "nt_id": "///A/66", "linked_nts": [ "///A/65", "///A/67" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,junction-loop,kissing-loop", "alpha": -73.425, "beta": 179.814, "gamma": 61.458, "delta": 84.469, "epsilon": -145.058, "zeta": -62.251, "epsilon_zeta": -82.807, "bb_type": "BI", "chi": -173.293, "glyco_bond": "anti", "C5prime_xyz": [ -1.270, 8.563, 1.325 ], "P_xyz": [ 1.261, 8.679, 2.002 ], "form": "A", "ssZp": 4.517, "Dp": 4.576, "splay_angle": 27.171, "splay_distance": 4.181, "splay_ratio": 0.235, "d22": null, "d64": null, "eta": 174.129, "theta": -129.413, "eta_prime": -172.157, "theta_prime": -129.278, "eta_base": -132.527, "theta_base": -87.330, "v0": 2.181, "v1": -23.040, "v2": 33.905, "v3": -33.601, "v4": 19.817, "amplitude": 35.121, "phase_angle": 15.122, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.804, "filter_rmsd": 0.065, "frame": { "rmsd": 0.007, "origin": [ 143.763, 209.273, 218.079 ], "x_axis": [ 0.438, 0.108, 0.893 ], "y_axis": [ 0.811, -0.476, -0.341 ], "z_axis": [ 0.388, 0.873, -0.296 ], "quaternion": [ -0.408, 0.743, 0.309, 0.431 ] } }, { "index": 65, "index_chain": 65, "chain_name": "A", "nt_resnum": 67, "nt_name": "A", "nt_code": "A", "nt_id": "///A/67", "linked_nts": [ "///A/66", "///A/68" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,kissing-loop", "alpha": -82.557, "beta": 171.101, "gamma": 64.945, "delta": 83.098, "epsilon": -144.225, "zeta": -66.063, "epsilon_zeta": -78.162, "bb_type": "BI", "chi": 178.953, "glyco_bond": "anti", "C5prime_xyz": [ -1.535, 8.344, 1.726 ], "P_xyz": [ 1.028, 8.613, 2.217 ], "form": "A", "ssZp": 4.607, "Dp": 4.633, "splay_angle": 21.457, "splay_distance": 3.346, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 158.875, "theta": -132.350, "eta_prime": -179.131, "theta_prime": -132.795, "eta_base": -113.140, "theta_base": -93.501, "v0": 2.899, "v1": -24.409, "v2": 35.372, "v3": -34.676, "v4": 20.049, "amplitude": 36.476, "phase_angle": 14.135, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.598, "filter_rmsd": 0.043, "frame": { "rmsd": 0.009, "origin": [ 145.801, 212.850, 218.813 ], "x_axis": [ 0.820, -0.393, 0.416 ], "y_axis": [ 0.175, -0.520, -0.836 ], "z_axis": [ 0.545, 0.758, -0.358 ], "quaternion": [ -0.485, 0.821, -0.066, 0.293 ] } }, { "index": 66, "index_chain": 66, "chain_name": "A", "nt_resnum": 68, "nt_name": "C", "nt_code": "C", "nt_id": "///A/68", "linked_nts": [ "///A/67", "///A/69" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop", "alpha": -85.614, "beta": -177.906, "gamma": 63.643, "delta": 83.792, "epsilon": -154.984, "zeta": -66.562, "epsilon_zeta": -88.422, "bb_type": "BI", "chi": -160.261, "glyco_bond": "anti", "C5prime_xyz": [ -1.214, 8.717, 0.553 ], "P_xyz": [ 1.388, 9.012, 0.714 ], "form": "A", "ssZp": 4.393, "Dp": 4.559, "splay_angle": 23.107, "splay_distance": 3.634, "splay_ratio": 0.201, "d22": 4.219, "d64": 4.195, "eta": 160.621, "theta": -141.593, "eta_prime": 179.067, "theta_prime": -141.638, "eta_base": -121.653, "theta_base": -109.547, "v0": 2.947, "v1": -24.046, "v2": 34.761, "v3": -34.022, "v4": 19.633, "amplitude": 35.825, "phase_angle": 13.994, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.562, "filter_rmsd": 0.062, "frame": { "rmsd": 0.008, "origin": [ 148.460, 214.770, 219.474 ], "x_axis": [ 0.694, -0.642, -0.326 ], "y_axis": [ -0.399, 0.033, -0.916 ], "z_axis": [ 0.599, 0.766, -0.233 ], "quaternion": [ 0.611, -0.688, 0.378, -0.099 ] } }, { "index": 67, "index_chain": 67, "chain_name": "A", "nt_resnum": 69, "nt_name": "C", "nt_code": "C", "nt_id": "///A/69", "linked_nts": [ "///A/68", "///A/70" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,hairpin-loop,A-minor", "alpha": -75.768, "beta": 171.430, "gamma": 65.143, "delta": 82.431, "epsilon": -156.773, "zeta": -75.821, "epsilon_zeta": -80.952, "bb_type": "BI", "chi": -161.077, "glyco_bond": "anti", "C5prime_xyz": [ -1.300, 8.738, 0.584 ], "P_xyz": [ 1.298, 9.058, 0.414 ], "form": "A", "ssZp": 4.435, "Dp": 4.568, "splay_angle": 26.294, "splay_distance": 4.121, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 165.616, "theta": -151.872, "eta_prime": -175.514, "theta_prime": -146.214, "eta_base": -124.821, "theta_base": -131.427, "v0": 2.473, "v1": -24.399, "v2": 35.764, "v3": -35.276, "v4": 20.696, "amplitude": 36.993, "phase_angle": 14.809, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.703, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 151.662, 216.427, 219.018 ], "x_axis": [ 0.316, -0.502, -0.805 ], "y_axis": [ -0.685, 0.466, -0.560 ], "z_axis": [ 0.656, 0.729, -0.196 ], "quaternion": [ 0.630, -0.512, 0.580, 0.073 ] } }, { "index": 68, "index_chain": 68, "chain_name": "A", "nt_resnum": 70, "nt_name": "G", "nt_code": "G", "nt_id": "///A/70", "linked_nts": [ "///A/69", "///A/71" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BII,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate", "alpha": -64.133, "beta": 177.389, "gamma": 75.634, "delta": 149.772, "epsilon": -102.636, "zeta": 138.010, "epsilon_zeta": 119.354, "bb_type": "BII", "chi": -140.424, "glyco_bond": "anti", "C5prime_xyz": [ -1.754, 8.762, -0.070 ], "P_xyz": [ 0.670, 9.137, 0.847 ], "form": ".", "ssZp": 0.764, "Dp": 0.871, "splay_angle": 38.286, "splay_distance": 6.189, "splay_ratio": 0.349, "d22": null, "d64": null, "eta": -152.854, "theta": 170.295, "eta_prime": -127.985, "theta_prime": 162.616, "eta_base": -115.022, "theta_base": 179.204, "v0": -21.992, "v1": 37.191, "v2": -37.403, "v3": 25.643, "v4": -2.496, "amplitude": 38.739, "phase_angle": 164.907, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.478, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 155.300, 218.357, 218.857 ], "x_axis": [ -0.257, -0.481, -0.838 ], "y_axis": [ -0.750, 0.646, -0.140 ], "z_axis": [ 0.609, 0.593, -0.527 ], "quaternion": [ 0.464, -0.395, 0.779, 0.145 ] } }, { "index": 69, "index_chain": 69, "chain_name": "A", "nt_resnum": 71, "nt_name": "A", "nt_code": "A", "nt_id": "///A/71", "linked_nts": [ "///A/70", "///A/72" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 44.381, "beta": 140.208, "gamma": -62.738, "delta": 149.354, "epsilon": -115.113, "zeta": 84.536, "epsilon_zeta": 160.351, "bb_type": "--", "chi": 59.274, "glyco_bond": "syn", "C5prime_xyz": [ -5.242, 3.727, 1.139 ], "P_xyz": [ -7.330, 2.460, 0.206 ], "form": ".", "ssZp": -1.176, "Dp": 1.220, "splay_angle": 116.985, "splay_distance": 16.455, "splay_ratio": 0.853, "d22": null, "d64": null, "eta": -150.218, "theta": 89.759, "eta_prime": -166.918, "theta_prime": 50.963, "eta_base": -163.840, "theta_base": -0.213, "v0": -19.772, "v1": 34.928, "v2": -35.893, "v3": 25.426, "v4": -3.728, "amplitude": 36.840, "phase_angle": 166.979, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 156.764, 221.419, 224.032 ], "x_axis": [ 0.589, -0.635, 0.500 ], "y_axis": [ -0.343, 0.364, 0.866 ], "z_axis": [ -0.732, -0.682, -0.004 ], "quaternion": [ 0.698, 0.554, -0.441, -0.104 ] } }, { "index": 70, "index_chain": 70, "chain_name": "A", "nt_resnum": 72, "nt_name": "U", "nt_code": "U", "nt_id": "///A/72", "linked_nts": [ "///A/71", "///A/73" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 63.540, "beta": -178.469, "gamma": 71.050, "delta": 147.577, "epsilon": -103.033, "zeta": -72.130, "epsilon_zeta": -30.902, "bb_type": "--", "chi": -140.695, "glyco_bond": "anti", "C5prime_xyz": [ -2.022, 8.717, -0.120 ], "P_xyz": [ 0.310, 9.345, 0.897 ], "form": ".", "ssZp": 0.959, "Dp": 0.987, "splay_angle": 119.767, "splay_distance": 16.389, "splay_ratio": 0.865, "d22": null, "d64": null, "eta": 10.587, "theta": -56.154, "eta_prime": 31.683, "theta_prime": -75.081, "eta_base": 74.242, "theta_base": -50.570, "v0": -23.045, "v1": 37.170, "v2": -36.270, "v3": 23.881, "v4": -0.728, "amplitude": 38.070, "phase_angle": 162.309, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.552, "filter_rmsd": 0.100, "frame": { "rmsd": 0.008, "origin": [ 145.543, 233.198, 221.566 ], "x_axis": [ 0.656, 0.753, -0.047 ], "y_axis": [ 0.551, -0.435, 0.712 ], "z_axis": [ 0.516, -0.493, -0.701 ], "quaternion": [ 0.361, 0.835, 0.390, 0.140 ] } }, { "index": 71, "index_chain": 71, "chain_name": "A", "nt_resnum": 73, "nt_name": "A", "nt_code": "A", "nt_id": "///A/73", "linked_nts": [ "///A/72", "///A/74" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-acceptor,phosphate,splayed-apart", "alpha": -65.464, "beta": -169.643, "gamma": 61.145, "delta": 83.008, "epsilon": -145.961, "zeta": -155.284, "epsilon_zeta": 9.323, "bb_type": "--", "chi": -154.083, "glyco_bond": "anti", "C5prime_xyz": [ -1.235, 8.655, 0.178 ], "P_xyz": [ 1.353, 8.962, 0.323 ], "form": ".", "ssZp": 4.234, "Dp": 4.655, "splay_angle": 94.897, "splay_distance": 13.739, "splay_ratio": 0.737, "d22": null, "d64": null, "eta": 174.337, "theta": 127.183, "eta_prime": -144.491, "theta_prime": 158.034, "eta_base": -118.488, "theta_base": 170.681, "v0": 3.884, "v1": -25.416, "v2": 36.131, "v3": -34.905, "v4": 19.567, "amplitude": 37.045, "phase_angle": 12.755, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.859, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 153.658, 219.720, 226.156 ], "x_axis": [ 0.081, 0.314, 0.946 ], "y_axis": [ -0.836, 0.538, -0.107 ], "z_axis": [ -0.542, -0.782, 0.306 ], "quaternion": [ 0.694, 0.243, -0.536, 0.414 ] } }, { "index": 72, "index_chain": 72, "chain_name": "A", "nt_resnum": 74, "nt_name": "U", "nt_code": "U", "nt_id": "///A/74", "linked_nts": [ "///A/73", "///A/75" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart", "alpha": -46.621, "beta": -164.395, "gamma": 55.731, "delta": 147.300, "epsilon": -56.460, "zeta": -23.383, "epsilon_zeta": -33.077, "bb_type": "--", "chi": -109.888, "glyco_bond": "anti", "C5prime_xyz": [ -2.250, 8.254, -1.713 ], "P_xyz": [ -0.040, 9.534, -1.177 ], "form": ".", "ssZp": -0.176, "Dp": 0.136, "splay_angle": 93.743, "splay_distance": 14.754, "splay_ratio": 0.730, "d22": null, "d64": null, "eta": -101.039, "theta": 48.197, "eta_prime": -123.027, "theta_prime": 33.337, "eta_base": -171.591, "theta_base": 61.082, "v0": -22.251, "v1": 36.313, "v2": -35.721, "v3": 23.841, "v4": -1.256, "amplitude": 37.339, "phase_angle": 163.069, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "3b", "suiteness": 0.166, "filter_rmsd": 0.095, "frame": { "rmsd": 0.014, "origin": [ 144.942, 211.489, 219.444 ], "x_axis": [ 0.903, -0.213, 0.375 ], "y_axis": [ -0.063, 0.795, 0.604 ], "z_axis": [ -0.426, -0.569, 0.704 ], "quaternion": [ 0.922, 0.318, -0.217, -0.040 ] } }, { "index": 73, "index_chain": 73, "chain_name": "A", "nt_resnum": 75, "nt_name": "G", "nt_code": "G", "nt_id": "///A/75", "linked_nts": [ "///A/74", "///A/76" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart", "alpha": 169.274, "beta": -160.018, "gamma": -178.645, "delta": 81.264, "epsilon": -150.098, "zeta": -124.597, "epsilon_zeta": -25.501, "bb_type": "--", "chi": -165.771, "glyco_bond": "anti", "C5prime_xyz": [ -1.525, 8.706, 0.843 ], "P_xyz": [ -0.296, 10.447, -0.672 ], "form": ".", "ssZp": 4.523, "Dp": 4.611, "splay_angle": 36.536, "splay_distance": 5.635, "splay_ratio": 0.314, "d22": null, "d64": null, "eta": 169.542, "theta": 172.754, "eta_prime": -172.485, "theta_prime": -178.820, "eta_base": -172.162, "theta_base": -157.417, "v0": 1.398, "v1": -23.791, "v2": 35.831, "v3": -36.018, "v4": 21.807, "amplitude": 37.367, "phase_angle": 16.486, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 145.215, 226.047, 217.065 ], "x_axis": [ -0.185, -0.380, -0.906 ], "y_axis": [ -0.643, -0.651, 0.404 ], "z_axis": [ -0.743, 0.657, -0.124 ], "quaternion": [ 0.101, -0.630, 0.406, 0.654 ] } }, { "index": 74, "index_chain": 74, "chain_name": "A", "nt_resnum": 76, "nt_name": "C", "nt_code": "C", "nt_id": "///A/76", "linked_nts": [ "///A/75", "///A/77" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,phosphate", "alpha": 35.286, "beta": 130.424, "gamma": -4.745, "delta": 82.552, "epsilon": -162.978, "zeta": -69.649, "epsilon_zeta": -93.329, "bb_type": "BI", "chi": -169.939, "glyco_bond": "anti", "C5prime_xyz": [ -1.440, 8.700, 1.076 ], "P_xyz": [ 0.598, 8.745, 2.714 ], "form": ".", "ssZp": 4.424, "Dp": 4.450, "splay_angle": 30.941, "splay_distance": 4.810, "splay_ratio": 0.268, "d22": 4.976, "d64": 5.274, "eta": -179.648, "theta": -152.008, "eta_prime": -178.682, "theta_prime": -146.826, "eta_base": -160.012, "theta_base": -124.906, "v0": -0.486, "v1": -21.340, "v2": 33.677, "v3": -34.914, "v4": 22.367, "amplitude": 35.696, "phase_angle": 19.364, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 142.654, 230.973, 216.096 ], "x_axis": [ 0.051, -0.817, -0.574 ], "y_axis": [ -0.230, -0.569, 0.790 ], "z_axis": [ -0.972, 0.091, -0.217 ], "quaternion": [ 0.258, 0.678, -0.386, -0.570 ] } }, { "index": 75, "index_chain": 75, "chain_name": "A", "nt_resnum": 77, "nt_name": "U", "nt_code": "U", "nt_id": "///A/77", "linked_nts": [ "///A/76", "///A/78" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -71.589, "beta": -170.516, "gamma": 53.191, "delta": 81.551, "epsilon": -149.196, "zeta": -74.459, "epsilon_zeta": -74.736, "bb_type": "BI", "chi": -170.335, "glyco_bond": "anti", "C5prime_xyz": [ -1.395, 8.590, 1.133 ], "P_xyz": [ 1.039, 8.910, 2.034 ], "form": "A", "ssZp": 4.573, "Dp": 4.612, "splay_angle": 24.448, "splay_distance": 3.826, "splay_ratio": 0.214, "d22": 4.237, "d64": 4.464, "eta": 174.997, "theta": -146.166, "eta_prime": -177.163, "theta_prime": -141.759, "eta_base": -148.562, "theta_base": -112.289, "v0": 1.743, "v1": -23.825, "v2": 35.659, "v3": -35.629, "v4": 21.346, "amplitude": 37.091, "phase_angle": 15.970, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.782, "filter_rmsd": 0.099, "frame": { "rmsd": 0.007, "origin": [ 138.924, 233.057, 213.886 ], "x_axis": [ 0.037, -0.989, -0.141 ], "y_axis": [ -0.031, -0.143, 0.989 ], "z_axis": [ -0.999, -0.032, -0.036 ], "quaternion": [ 0.463, 0.551, -0.463, -0.517 ] } }, { "index": 76, "index_chain": 76, "chain_name": "A", "nt_resnum": 78, "nt_name": "U", "nt_code": "U", "nt_id": "///A/78", "linked_nts": [ "///A/77", "///A/79" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -56.066, "beta": 168.784, "gamma": 54.503, "delta": 82.876, "epsilon": -150.006, "zeta": -76.089, "epsilon_zeta": -73.917, "bb_type": "BI", "chi": -167.008, "glyco_bond": "anti", "C5prime_xyz": [ -1.510, 8.680, 0.945 ], "P_xyz": [ 1.035, 9.053, 1.423 ], "form": "A", "ssZp": 4.419, "Dp": 4.513, "splay_angle": 20.117, "splay_distance": 3.218, "splay_ratio": 0.176, "d22": 4.300, "d64": 4.140, "eta": 174.088, "theta": -145.532, "eta_prime": -170.387, "theta_prime": -145.058, "eta_base": -128.121, "theta_base": -119.003, "v0": -0.493, "v1": -21.191, "v2": 33.573, "v3": -34.796, "v4": 22.244, "amplitude": 35.589, "phase_angle": 19.378, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.915, "filter_rmsd": 0.103, "frame": { "rmsd": 0.007, "origin": [ 135.636, 232.235, 212.112 ], "x_axis": [ 0.052, -0.897, 0.439 ], "y_axis": [ -0.026, 0.438, 0.899 ], "z_axis": [ -0.998, -0.058, -0.001 ], "quaternion": [ 0.610, 0.392, -0.589, -0.357 ] } }, { "index": 77, "index_chain": 77, "chain_name": "A", "nt_resnum": 79, "nt_name": "C", "nt_code": "C", "nt_id": "///A/79", "linked_nts": [ "///A/78", "///A/80" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor", "alpha": -59.930, "beta": 171.168, "gamma": 49.713, "delta": 83.812, "epsilon": -159.008, "zeta": -72.963, "epsilon_zeta": -86.045, "bb_type": "BI", "chi": -157.962, "glyco_bond": "anti", "C5prime_xyz": [ -1.452, 8.808, 0.409 ], "P_xyz": [ 1.094, 9.247, 0.842 ], "form": "A", "ssZp": 4.216, "Dp": 4.412, "splay_angle": 20.745, "splay_distance": 3.711, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 167.616, "theta": -120.816, "eta_prime": -177.934, "theta_prime": -134.766, "eta_base": -137.457, "theta_base": -119.614, "v0": -1.049, "v1": -20.032, "v2": 32.267, "v3": -33.811, "v4": 22.011, "amplitude": 34.415, "phase_angle": 20.353, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.936, "filter_rmsd": 0.063, "frame": { "rmsd": 0.009, "origin": [ 132.845, 230.976, 211.118 ], "x_axis": [ 0.108, -0.495, 0.862 ], "y_axis": [ -0.138, 0.852, 0.506 ], "z_axis": [ -0.985, -0.173, 0.023 ], "quaternion": [ 0.704, 0.241, -0.656, -0.127 ] } }, { "index": 78, "index_chain": 78, "chain_name": "A", "nt_resnum": 80, "nt_name": "G", "nt_code": "G", "nt_id": "///A/80", "linked_nts": [ "///A/79", "///A/81" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet", "alpha": 152.900, "beta": -167.772, "gamma": 170.022, "delta": 81.340, "epsilon": -150.266, "zeta": -72.697, "epsilon_zeta": -77.569, "bb_type": "BI", "chi": -178.356, "glyco_bond": "anti", "C5prime_xyz": [ -1.649, 8.491, 1.575 ], "P_xyz": [ -0.052, 10.347, 0.663 ], "form": "A", "ssZp": 4.558, "Dp": 4.582, "splay_angle": 22.060, "splay_distance": 3.424, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 150.428, "theta": -171.016, "eta_prime": 167.947, "theta_prime": -165.315, "eta_base": -154.385, "theta_base": -132.842, "v0": 1.130, "v1": -23.319, "v2": 35.391, "v3": -35.763, "v4": 21.823, "amplitude": 36.992, "phase_angle": 16.921, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.825, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 130.250, 228.324, 211.057 ], "x_axis": [ 0.330, 0.000, 0.944 ], "y_axis": [ -0.224, 0.972, 0.078 ], "z_axis": [ -0.917, -0.237, 0.321 ], "quaternion": [ 0.810, 0.097, -0.575, 0.069 ] } }, { "index": 79, "index_chain": 79, "chain_name": "A", "nt_resnum": 81, "nt_name": "G", "nt_code": "G", "nt_id": "///A/81", "linked_nts": [ "///A/80", "///A/82" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -66.775, "beta": -171.747, "gamma": 48.242, "delta": 86.279, "epsilon": -144.372, "zeta": -61.298, "epsilon_zeta": -83.073, "bb_type": "BI", "chi": -153.324, "glyco_bond": "anti", "C5prime_xyz": [ -1.176, 8.691, 0.225 ], "P_xyz": [ 1.342, 8.972, 0.891 ], "form": ".", "ssZp": 4.157, "Dp": 4.580, "splay_angle": 31.089, "splay_distance": 4.935, "splay_ratio": 0.268, "d22": null, "d64": null, "eta": 173.783, "theta": -128.188, "eta_prime": -176.430, "theta_prime": -122.807, "eta_base": -138.610, "theta_base": -80.933, "v0": 4.546, "v1": -24.533, "v2": 34.045, "v3": -32.356, "v4": 17.551, "amplitude": 34.711, "phase_angle": 11.243, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.836, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 128.194, 225.994, 212.495 ], "x_axis": [ 0.148, 0.619, 0.772 ], "y_axis": [ -0.463, 0.733, -0.499 ], "z_axis": [ -0.874, -0.284, 0.395 ], "quaternion": [ 0.754, -0.071, -0.545, 0.359 ] } }, { "index": 80, "index_chain": 80, "chain_name": "A", "nt_resnum": 82, "nt_name": "G", "nt_code": "G", "nt_id": "///A/82", "linked_nts": [ "///A/81", "///A/83" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -72.362, "beta": 161.388, "gamma": 74.438, "delta": 81.181, "epsilon": -119.196, "zeta": -92.072, "epsilon_zeta": -27.125, "bb_type": "--", "chi": -153.264, "glyco_bond": "anti", "C5prime_xyz": [ -1.287, 8.766, 0.095 ], "P_xyz": [ 1.121, 9.044, -0.890 ], "form": ".", "ssZp": 3.998, "Dp": 4.764, "splay_angle": 17.982, "splay_distance": 2.928, "splay_ratio": 0.164, "d22": null, "d64": null, "eta": 175.508, "theta": -140.987, "eta_prime": -160.927, "theta_prime": -130.574, "eta_base": -103.528, "theta_base": -107.071, "v0": 2.775, "v1": -25.316, "v2": 36.966, "v3": -36.338, "v4": 21.188, "amplitude": 38.183, "phase_angle": 14.506, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.323, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 124.996, 227.406, 215.978 ], "x_axis": [ -0.362, 0.906, 0.221 ], "y_axis": [ -0.523, -0.001, -0.852 ], "z_axis": [ -0.771, -0.424, 0.474 ], "quaternion": [ 0.527, -0.203, -0.471, 0.678 ] } }, { "index": 81, "index_chain": 81, "chain_name": "A", "nt_resnum": 83, "nt_name": "G", "nt_code": "G", "nt_id": "///A/83", "linked_nts": [ "///A/82", "///A/84" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate", "alpha": -62.513, "beta": 163.977, "gamma": 77.105, "delta": 148.714, "epsilon": -104.360, "zeta": 163.859, "epsilon_zeta": 91.781, "bb_type": "BII", "chi": -90.686, "glyco_bond": "anti", "C5prime_xyz": [ -2.428, 7.747, -2.450 ], "P_xyz": [ 0.028, 7.803, -3.364 ], "form": ".", "ssZp": 0.643, "Dp": 0.996, "splay_angle": 42.796, "splay_distance": 7.210, "splay_ratio": 0.367, "d22": null, "d64": null, "eta": -161.401, "theta": 155.882, "eta_prime": -133.038, "theta_prime": 148.665, "eta_base": -114.015, "theta_base": 166.368, "v0": -20.272, "v1": 35.176, "v2": -35.800, "v3": 25.025, "v4": -3.214, "amplitude": 36.875, "phase_angle": 166.129, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.247, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 122.237, 227.703, 216.913 ], "x_axis": [ -0.230, 0.893, -0.387 ], "y_axis": [ -0.763, -0.412, -0.498 ], "z_axis": [ -0.604, 0.180, 0.776 ], "quaternion": [ 0.533, -0.319, -0.102, 0.777 ] } }, { "index": 82, "index_chain": 82, "chain_name": "A", "nt_resnum": 84, "nt_name": "A", "nt_code": "A", "nt_id": "///A/84", "linked_nts": [ "///A/83", "///A/85" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate", "alpha": -98.667, "beta": 167.811, "gamma": 48.875, "delta": 147.099, "epsilon": -111.723, "zeta": 126.615, "epsilon_zeta": 121.662, "bb_type": "--", "chi": -114.258, "glyco_bond": "anti", "C5prime_xyz": [ -2.048, 8.439, -1.494 ], "P_xyz": [ 0.417, 9.295, -1.205 ], "form": ".", "ssZp": 1.235, "Dp": 1.213, "splay_angle": 47.373, "splay_distance": 8.052, "splay_ratio": 0.402, "d22": null, "d64": null, "eta": -169.126, "theta": 175.050, "eta_prime": -169.028, "theta_prime": 157.492, "eta_base": -160.717, "theta_base": 178.183, "v0": -22.836, "v1": 36.871, "v2": -36.003, "v3": 23.718, "v4": -0.722, "amplitude": 37.783, "phase_angle": 162.345, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4b", "suiteness": 0.254, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 122.239, 222.685, 222.091 ], "x_axis": [ -0.409, 0.894, -0.184 ], "y_axis": [ -0.662, -0.429, -0.615 ], "z_axis": [ -0.628, -0.130, 0.767 ], "quaternion": [ 0.482, -0.251, -0.231, 0.807 ] } }, { "index": 83, "index_chain": 83, "chain_name": "A", "nt_resnum": 85, "nt_name": "G", "nt_code": "G", "nt_id": "///A/85", "linked_nts": [ "///A/84", "///A/86" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,multiplet,internal-loop,A-minor", "alpha": 71.092, "beta": -82.158, "gamma": -154.888, "delta": 81.601, "epsilon": -150.968, "zeta": -65.398, "epsilon_zeta": -85.570, "bb_type": "BI", "chi": -163.147, "glyco_bond": "anti", "C5prime_xyz": [ -1.369, 8.674, 0.699 ], "P_xyz": [ -1.470, 9.703, -1.709 ], "form": "A", "ssZp": 4.501, "Dp": 4.646, "splay_angle": 22.093, "splay_distance": 3.632, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": -125.108, "theta": 174.621, "eta_prime": -134.073, "theta_prime": -177.262, "eta_base": -110.141, "theta_base": -146.011, "v0": 3.916, "v1": -26.187, "v2": 37.307, "v3": -35.998, "v4": 20.245, "amplitude": 38.261, "phase_angle": 12.825, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "0i", "suiteness": 0.069, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 124.591, 216.351, 226.471 ], "x_axis": [ -0.349, -0.623, 0.700 ], "y_axis": [ -0.558, -0.462, -0.689 ], "z_axis": [ 0.753, -0.632, -0.186 ], "quaternion": [ -0.025, 0.570, -0.518, 0.637 ] } }, { "index": 84, "index_chain": 84, "chain_name": "A", "nt_resnum": 86, "nt_name": "C", "nt_code": "C", "nt_id": "///A/86", "linked_nts": [ "///A/85", "///A/87" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": -67.158, "beta": 164.948, "gamma": 68.723, "delta": 79.541, "epsilon": -113.331, "zeta": -119.495, "epsilon_zeta": 6.164, "bb_type": "--", "chi": -167.118, "glyco_bond": "anti", "C5prime_xyz": [ -1.695, 8.839, 0.877 ], "P_xyz": [ 0.810, 9.571, 0.804 ], "form": ".", "ssZp": 4.326, "Dp": 4.586, "splay_angle": 30.065, "splay_distance": 5.188, "splay_ratio": 0.263, "d22": 5.193, "d64": 5.990, "eta": -178.913, "theta": -136.790, "eta_prime": -164.664, "theta_prime": -146.043, "eta_base": -123.440, "theta_base": -135.753, "v0": -4.282, "v1": -19.139, "v2": 33.902, "v3": -37.339, "v4": 26.255, "amplitude": 37.418, "phase_angle": 25.037, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.594, "filter_rmsd": 0.059, "frame": { "rmsd": 0.007, "origin": [ 127.065, 214.234, 228.078 ], "x_axis": [ -0.606, -0.764, 0.222 ], "y_axis": [ -0.218, -0.109, -0.970 ], "z_axis": [ 0.765, -0.636, -0.101 ], "quaternion": [ -0.215, 0.389, -0.632, 0.635 ] } }, { "index": 85, "index_chain": 85, "chain_name": "A", "nt_resnum": 87, "nt_name": "U", "nt_code": "U", "nt_id": "///A/87", "linked_nts": [ "///A/86", "///A/88" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,hairpin-loop,junction-loop,kissing-loop,splayed-apart", "alpha": 88.898, "beta": -122.676, "gamma": -142.747, "delta": 82.406, "epsilon": -107.681, "zeta": 130.136, "epsilon_zeta": 122.183, "bb_type": "BII", "chi": -175.427, "glyco_bond": "anti", "C5prime_xyz": [ -0.838, 8.238, 1.470 ], "P_xyz": [ -0.008, 10.305, 0.119 ], "form": ".", "ssZp": 4.731, "Dp": 4.869, "splay_angle": 148.197, "splay_distance": 17.430, "splay_ratio": 0.962, "d22": null, "d64": null, "eta": 171.940, "theta": 28.131, "eta_prime": 176.462, "theta_prime": 37.639, "eta_base": -160.165, "theta_base": -170.795, "v0": 9.733, "v1": -30.196, "v2": 38.279, "v3": -33.616, "v4": 15.130, "amplitude": 38.386, "phase_angle": 4.280, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.107, "frame": { "rmsd": 0.008, "origin": [ 131.184, 211.453, 229.567 ], "x_axis": [ -0.621, -0.780, -0.080 ], "y_axis": [ -0.071, 0.157, -0.985 ], "z_axis": [ 0.781, -0.606, -0.153 ], "quaternion": [ 0.310, -0.306, 0.695, -0.573 ] } }, { "index": 86, "index_chain": 86, "chain_name": "A", "nt_resnum": 88, "nt_name": "G", "nt_code": "G", "nt_id": "///A/88", "linked_nts": [ "///A/87", "///A/89" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,junction-loop,kissing-loop,splayed-apart", "alpha": -78.005, "beta": -153.074, "gamma": 75.046, "delta": 80.148, "epsilon": -175.479, "zeta": -76.752, "epsilon_zeta": -98.728, "bb_type": "BI", "chi": -150.613, "glyco_bond": "anti", "C5prime_xyz": [ -1.419, 8.870, -0.080 ], "P_xyz": [ 1.159, 9.350, 0.016 ], "form": "A", "ssZp": 4.133, "Dp": 4.378, "splay_angle": 23.357, "splay_distance": 3.860, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": -112.322, "theta": -133.324, "eta_prime": -102.569, "theta_prime": -138.837, "eta_base": 115.992, "theta_base": -111.568, "v0": -0.479, "v1": -21.893, "v2": 34.661, "v3": -35.862, "v4": 22.945, "amplitude": 36.729, "phase_angle": 19.317, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 143.893, 209.434, 217.810 ], "x_axis": [ 0.354, -0.033, 0.935 ], "y_axis": [ -0.909, 0.221, 0.353 ], "z_axis": [ -0.218, -0.975, 0.048 ], "quaternion": [ 0.637, 0.521, -0.452, 0.344 ] } }, { "index": 87, "index_chain": 87, "chain_name": "A", "nt_resnum": 89, "nt_name": "U", "nt_code": "U", "nt_id": "///A/89", "linked_nts": [ "///A/88", "///A/90" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,internal-loop,kissing-loop,phosphate", "alpha": 163.065, "beta": -145.696, "gamma": 165.369, "delta": 79.877, "epsilon": -113.922, "zeta": 41.208, "epsilon_zeta": 204.870, "bb_type": "--", "chi": -160.508, "glyco_bond": "anti", "C5prime_xyz": [ -1.292, 8.689, 0.560 ], "P_xyz": [ 0.325, 9.645, -1.251 ], "form": ".", "ssZp": 4.260, "Dp": 4.781, "splay_angle": 25.633, "splay_distance": 4.001, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 172.210, "theta": -28.476, "eta_prime": -171.700, "theta_prime": -67.933, "eta_base": -128.027, "theta_base": -112.217, "v0": 2.960, "v1": -25.300, "v2": 36.810, "v3": -36.103, "v4": 20.896, "amplitude": 37.975, "phase_angle": 14.234, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.545, "filter_rmsd": 0.103, "frame": { "rmsd": 0.006, "origin": [ 144.679, 205.920, 219.202 ], "x_axis": [ -0.181, -0.104, 0.978 ], "y_axis": [ -0.983, 0.003, -0.182 ], "z_axis": [ 0.016, -0.995, -0.103 ], "quaternion": [ -0.424, -0.479, 0.567, -0.518 ] } }, { "index": 88, "index_chain": 88, "chain_name": "A", "nt_resnum": 90, "nt_name": "A", "nt_code": "A", "nt_id": "///A/90", "linked_nts": [ "///A/89", "///A/91" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop,kissing-loop,cap-donor", "alpha": 177.429, "beta": 134.790, "gamma": 52.325, "delta": 147.505, "epsilon": -123.941, "zeta": 80.750, "epsilon_zeta": 155.310, "bb_type": "--", "chi": -118.822, "glyco_bond": "anti", "C5prime_xyz": [ -2.117, 8.490, -1.251 ], "P_xyz": [ 0.487, 8.614, -0.996 ], "form": ".", "ssZp": 1.416, "Dp": 1.425, "splay_angle": 28.098, "splay_distance": 4.748, "splay_ratio": 0.267, "d22": null, "d64": null, "eta": 33.985, "theta": 130.904, "eta_prime": 105.389, "theta_prime": 87.841, "eta_base": 105.613, "theta_base": 77.743, "v0": -22.709, "v1": 36.839, "v2": -36.121, "v3": 23.957, "v4": -0.984, "amplitude": 37.831, "phase_angle": 162.709, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.221, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 143.797, 202.485, 221.052 ], "x_axis": [ 0.626, 0.100, -0.773 ], "y_axis": [ -0.779, 0.046, -0.625 ], "z_axis": [ -0.027, 0.994, 0.107 ], "quaternion": [ 0.667, -0.607, 0.280, 0.330 ] } }, { "index": 89, "index_chain": 89, "chain_name": "A", "nt_resnum": 91, "nt_name": "A", "nt_code": "A", "nt_id": "///A/91", "linked_nts": [ "///A/90", "///A/92" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,internal-loop,kissing-loop,cap-acceptor", "alpha": 101.118, "beta": -117.784, "gamma": 146.576, "delta": 75.658, "epsilon": -118.099, "zeta": -87.874, "epsilon_zeta": -30.225, "bb_type": "--", "chi": -105.017, "glyco_bond": "anti", "C5prime_xyz": [ -2.064, 7.924, -2.476 ], "P_xyz": [ -1.173, 6.432, -4.418 ], "form": ".", "ssZp": 0.630, "Dp": 4.787, "splay_angle": 57.924, "splay_distance": 9.469, "splay_ratio": 0.484, "d22": null, "d64": null, "eta": 146.926, "theta": -83.954, "eta_prime": 150.244, "theta_prime": -91.112, "eta_base": 144.390, "theta_base": -75.614, "v0": 1.835, "v1": -25.762, "v2": 38.858, "v3": -38.826, "v4": 23.233, "amplitude": 40.440, "phase_angle": 16.075, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 140.424, 199.143, 221.042 ], "x_axis": [ 0.398, 0.329, 0.856 ], "y_axis": [ -0.917, 0.118, 0.381 ], "z_axis": [ 0.025, -0.937, 0.349 ], "quaternion": [ 0.683, 0.483, -0.304, 0.456 ] } }, { "index": 90, "index_chain": 90, "chain_name": "A", "nt_resnum": 92, "nt_name": "G", "nt_code": "G", "nt_id": "///A/92", "linked_nts": [ "///A/91", "///A/93" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop,junction-loop,kissing-loop", "alpha": 67.807, "beta": 113.500, "gamma": -32.996, "delta": 80.099, "epsilon": -155.874, "zeta": -79.629, "epsilon_zeta": -76.246, "bb_type": "BI", "chi": -157.660, "glyco_bond": "anti", "C5prime_xyz": [ -1.656, 8.787, 0.364 ], "P_xyz": [ -0.057, 9.401, 2.352 ], "form": "A", "ssZp": 4.350, "Dp": 4.578, "splay_angle": 19.739, "splay_distance": 3.107, "splay_ratio": 0.172, "d22": null, "d64": null, "eta": 151.021, "theta": -164.502, "eta_prime": 177.418, "theta_prime": -155.624, "eta_base": -147.927, "theta_base": -120.248, "v0": 1.152, "v1": -24.193, "v2": 36.725, "v3": -37.024, "v4": 22.617, "amplitude": 38.379, "phase_angle": 16.880, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 138.316, 204.950, 228.218 ], "x_axis": [ -0.006, 0.576, -0.817 ], "y_axis": [ -0.548, -0.686, -0.480 ], "z_axis": [ -0.837, 0.445, 0.320 ], "quaternion": [ 0.396, -0.583, -0.012, 0.709 ] } }, { "index": 91, "index_chain": 91, "chain_name": "A", "nt_resnum": 93, "nt_name": "C", "nt_code": "C", "nt_id": "///A/93", "linked_nts": [ "///A/92", "///A/94" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,kissing-loop", "alpha": -54.828, "beta": 162.604, "gamma": 54.703, "delta": 82.336, "epsilon": 174.463, "zeta": -85.067, "epsilon_zeta": -100.470, "bb_type": "BI", "chi": -156.873, "glyco_bond": "anti", "C5prime_xyz": [ -1.298, 8.794, 0.348 ], "P_xyz": [ 1.306, 9.061, 0.275 ], "form": "A", "ssZp": 4.151, "Dp": 4.242, "splay_angle": 27.541, "splay_distance": 4.298, "splay_ratio": 0.238, "d22": null, "d64": null, "eta": 168.777, "theta": -142.636, "eta_prime": -173.829, "theta_prime": -150.874, "eta_base": -131.372, "theta_base": -128.951, "v0": 1.130, "v1": -22.509, "v2": 34.160, "v3": -34.419, "v4": 21.049, "amplitude": 35.691, "phase_angle": 16.843, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.833, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 136.546, 207.305, 229.207 ], "x_axis": [ -0.285, 0.134, -0.949 ], "y_axis": [ -0.575, -0.816, 0.058 ], "z_axis": [ -0.767, 0.563, 0.309 ], "quaternion": [ 0.228, -0.553, 0.200, 0.776 ] } }, { "index": 92, "index_chain": 92, "chain_name": "A", "nt_resnum": 94, "nt_name": "A", "nt_code": "A", "nt_id": "///A/94", "linked_nts": [ "///A/93", "///A/95" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,junction-loop,kissing-loop", "alpha": 168.221, "beta": -134.964, "gamma": 153.895, "delta": 82.293, "epsilon": -114.217, "zeta": -81.279, "epsilon_zeta": -32.938, "bb_type": "--", "chi": 166.954, "glyco_bond": "anti", "C5prime_xyz": [ -1.742, 8.031, 2.320 ], "P_xyz": [ 0.667, 8.914, 1.797 ], "form": "A", "ssZp": 4.633, "Dp": 4.695, "splay_angle": 24.374, "splay_distance": 3.749, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 172.358, "theta": -131.064, "eta_prime": -174.200, "theta_prime": -133.093, "eta_base": -133.314, "theta_base": -87.150, "v0": 2.410, "v1": -23.897, "v2": 35.107, "v3": -34.691, "v4": 20.363, "amplitude": 36.329, "phase_angle": 14.899, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.074, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 134.131, 210.684, 230.315 ], "x_axis": [ -0.507, -0.266, -0.820 ], "y_axis": [ -0.225, -0.878, 0.423 ], "z_axis": [ -0.832, 0.399, 0.385 ], "quaternion": [ -0.012, -0.496, 0.247, 0.832 ] } }, { "index": 93, "index_chain": 93, "chain_name": "A", "nt_resnum": 95, "nt_name": "A", "nt_code": "A", "nt_id": "///A/95", "linked_nts": [ "///A/94", "///A/96" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,junction-loop,kissing-loop", "alpha": -60.440, "beta": 160.972, "gamma": 51.521, "delta": 82.448, "epsilon": -175.714, "zeta": -81.135, "epsilon_zeta": -94.578, "bb_type": "BI", "chi": -164.942, "glyco_bond": "anti", "C5prime_xyz": [ -1.347, 8.660, 0.833 ], "P_xyz": [ 1.252, 8.905, 1.034 ], "form": ".", "ssZp": 4.332, "Dp": 4.364, "splay_angle": 24.004, "splay_distance": 4.175, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 151.547, "theta": -135.066, "eta_prime": 178.212, "theta_prime": -144.559, "eta_base": -109.187, "theta_base": -140.561, "v0": 1.345, "v1": -22.886, "v2": 34.521, "v3": -34.713, "v4": 21.072, "amplitude": 36.011, "phase_angle": 16.541, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.386, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 130.600, 211.665, 229.525 ], "x_axis": [ -0.473, -0.866, -0.163 ], "y_axis": [ 0.212, -0.291, 0.933 ], "z_axis": [ -0.855, 0.406, 0.321 ], "quaternion": [ -0.373, -0.353, 0.464, 0.722 ] } }, { "index": 94, "index_chain": 94, "chain_name": "A", "nt_resnum": 96, "nt_name": "G", "nt_code": "G", "nt_id": "///A/96", "linked_nts": [ "///A/95", "///A/97" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 160.578, "beta": -147.324, "gamma": 176.118, "delta": 82.264, "epsilon": -154.885, "zeta": -72.621, "epsilon_zeta": -82.264, "bb_type": "BI", "chi": -176.953, "glyco_bond": "anti", "C5prime_xyz": [ -1.655, 8.591, 1.490 ], "P_xyz": [ 0.108, 10.150, 0.349 ], "form": "A", "ssZp": 4.425, "Dp": 4.473, "splay_angle": 22.431, "splay_distance": 3.546, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 177.495, "theta": -170.483, "eta_prime": -167.572, "theta_prime": -168.551, "eta_base": -143.448, "theta_base": -147.297, "v0": -1.172, "v1": -20.541, "v2": 33.191, "v3": -34.803, "v4": 22.685, "amplitude": 35.427, "phase_angle": 20.464, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.728, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 127.586, 213.989, 227.807 ], "x_axis": [ -0.562, -0.802, 0.203 ], "y_axis": [ 0.271, 0.053, 0.961 ], "z_axis": [ -0.782, 0.595, 0.187 ], "quaternion": [ -0.412, -0.222, 0.597, 0.651 ] } }, { "index": 95, "index_chain": 95, "chain_name": "A", "nt_resnum": 97, "nt_name": "C", "nt_code": "C", "nt_id": "///A/97", "linked_nts": [ "///A/96", "///A/98" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,multiplet,internal-loop,A-minor", "alpha": -67.294, "beta": -168.716, "gamma": 44.184, "delta": 84.916, "epsilon": -170.925, "zeta": -83.707, "epsilon_zeta": -87.218, "bb_type": "BI", "chi": -153.529, "glyco_bond": "anti", "C5prime_xyz": [ -1.189, 8.727, 0.196 ], "P_xyz": [ 1.257, 9.146, 1.036 ], "form": "A", "ssZp": 4.124, "Dp": 4.362, "splay_angle": 18.308, "splay_distance": 2.940, "splay_ratio": 0.160, "d22": 4.015, "d64": 3.753, "eta": 169.491, "theta": -136.091, "eta_prime": 179.729, "theta_prime": -140.511, "eta_base": -150.312, "theta_base": -110.823, "v0": 3.242, "v1": -23.478, "v2": 33.679, "v3": -32.765, "v4": 18.654, "amplitude": 34.622, "phase_angle": 13.402, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.743, "filter_rmsd": 0.063, "frame": { "rmsd": 0.007, "origin": [ 124.914, 215.794, 226.332 ], "x_axis": [ -0.287, -0.669, 0.685 ], "y_axis": [ 0.484, 0.516, 0.707 ], "z_axis": [ -0.827, 0.534, 0.176 ], "quaternion": [ 0.593, 0.073, -0.638, -0.486 ] } }, { "index": 96, "index_chain": 96, "chain_name": "A", "nt_resnum": 98, "nt_name": "U", "nt_code": "U", "nt_id": "///A/98", "linked_nts": [ "///A/97", "///A/99" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": 167.584, "beta": -143.516, "gamma": 150.092, "delta": 83.053, "epsilon": -94.250, "zeta": -142.451, "epsilon_zeta": 48.201, "bb_type": "--", "chi": -170.366, "glyco_bond": "anti", "C5prime_xyz": [ -1.394, 8.575, 1.154 ], "P_xyz": [ 0.820, 9.295, -0.048 ], "form": ".", "ssZp": 4.307, "Dp": 4.645, "splay_angle": 44.675, "splay_distance": 6.904, "splay_ratio": 0.382, "d22": 11.809, "d64": 11.750, "eta": 167.672, "theta": -179.937, "eta_prime": -179.437, "theta_prime": 178.837, "eta_base": -136.980, "theta_base": 159.390, "v0": 2.463, "v1": -23.725, "v2": 34.738, "v3": -34.292, "v4": 20.107, "amplitude": 35.927, "phase_angle": 14.782, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.043, "filter_rmsd": 0.106, "frame": { "rmsd": 0.005, "origin": [ 122.040, 216.243, 226.761 ], "x_axis": [ 0.066, -0.330, 0.942 ], "y_axis": [ 0.418, 0.866, 0.274 ], "z_axis": [ -0.906, 0.376, 0.195 ], "quaternion": [ 0.729, -0.035, -0.634, -0.257 ] } }, { "index": 97, "index_chain": 97, "chain_name": "A", "nt_resnum": 99, "nt_name": "U", "nt_code": "U", "nt_id": "///A/99", "linked_nts": [ "///A/98", "///A/100" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,k-turn,syn,~C2'-endo,non-pair-contact,internal-loop,splayed-apart", "alpha": 22.968, "beta": -146.559, "gamma": -75.258, "delta": 148.689, "epsilon": -119.241, "zeta": 41.359, "epsilon_zeta": 199.401, "bb_type": "--", "chi": 27.042, "glyco_bond": "syn", "C5prime_xyz": [ -5.477, 4.009, -0.601 ], "P_xyz": [ -7.982, 3.252, -0.795 ], "form": ".", "ssZp": -1.182, "Dp": 1.358, "splay_angle": 112.191, "splay_distance": 17.479, "splay_ratio": 0.830, "d22": 12.054, "d64": 15.105, "eta": -152.992, "theta": 32.716, "eta_prime": -168.035, "theta_prime": 11.378, "eta_base": 162.402, "theta_base": -12.748, "v0": -21.401, "v1": 36.478, "v2": -36.770, "v3": 25.344, "v4": -2.686, "amplitude": 38.028, "phase_angle": 165.224, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.107, "frame": { "rmsd": 0.006, "origin": [ 118.285, 219.249, 221.810 ], "x_axis": [ -0.613, -0.459, -0.643 ], "y_axis": [ -0.448, 0.872, -0.196 ], "z_axis": [ 0.651, 0.167, -0.740 ], "quaternion": [ 0.360, -0.253, 0.898, -0.008 ] } }, { "index": 98, "index_chain": 98, "chain_name": "A", "nt_resnum": 100, "nt_name": "U", "nt_code": "U", "nt_id": "///A/100", "linked_nts": [ "///A/99", "///A/101" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,k-turn,anti,~C3'-endo,BII,non-stack,internal-loop,splayed-apart", "alpha": 80.427, "beta": 96.281, "gamma": 170.493, "delta": 79.660, "epsilon": -128.827, "zeta": 141.913, "epsilon_zeta": 89.260, "bb_type": "BII", "chi": -158.973, "glyco_bond": "anti", "C5prime_xyz": [ -1.252, 8.656, 0.453 ], "P_xyz": [ -2.004, 10.577, -1.157 ], "form": ".", "ssZp": 4.338, "Dp": 4.787, "splay_angle": 133.874, "splay_distance": 17.475, "splay_ratio": 0.920, "d22": null, "d64": null, "eta": 50.169, "theta": -18.685, "eta_prime": 55.016, "theta_prime": -18.625, "eta_base": 85.449, "theta_base": -13.736, "v0": 5.343, "v1": -27.835, "v2": 38.623, "v3": -36.574, "v4": 19.698, "amplitude": 39.345, "phase_angle": 10.994, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6j", "suiteness": 0.364, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 122.328, 231.732, 233.357 ], "x_axis": [ 0.268, -0.905, 0.332 ], "y_axis": [ -0.366, -0.414, -0.833 ], "z_axis": [ 0.891, 0.101, -0.442 ], "quaternion": [ -0.321, 0.729, -0.436, 0.420 ] } }, { "index": 99, "index_chain": 99, "chain_name": "A", "nt_resnum": 101, "nt_name": "G", "nt_code": "G", "nt_id": "///A/101", "linked_nts": [ "///A/100", "///A/102" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,splayed-apart", "alpha": -169.139, "beta": 92.562, "gamma": 138.777, "delta": 84.240, "epsilon": -160.829, "zeta": -152.232, "epsilon_zeta": -8.597, "bb_type": "--", "chi": -178.222, "glyco_bond": "anti", "C5prime_xyz": [ -1.595, 8.518, 1.567 ], "P_xyz": [ -0.871, 10.024, -0.444 ], "form": ".", "ssZp": 4.343, "Dp": 4.407, "splay_angle": 77.406, "splay_distance": 10.834, "splay_ratio": 0.625, "d22": null, "d64": null, "eta": 171.846, "theta": 90.411, "eta_prime": -169.013, "theta_prime": 107.021, "eta_base": -135.187, "theta_base": 130.645, "v0": -0.598, "v1": -20.270, "v2": 32.145, "v3": -33.449, "v4": 21.532, "amplitude": 34.131, "phase_angle": 19.642, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 117.102, 226.512, 217.520 ], "x_axis": [ -0.491, 0.837, -0.242 ], "y_axis": [ 0.565, 0.517, 0.643 ], "z_axis": [ 0.663, 0.179, -0.726 ], "quaternion": [ 0.274, 0.424, 0.827, 0.249 ] } }, { "index": 100, "index_chain": 100, "chain_name": "A", "nt_resnum": 102, "nt_name": "A", "nt_code": "A", "nt_id": "///A/102", "linked_nts": [ "///A/101", "///A/103" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,phosphate", "alpha": -42.473, "beta": 132.434, "gamma": 70.812, "delta": 81.045, "epsilon": -117.688, "zeta": -75.717, "epsilon_zeta": -41.971, "bb_type": "--", "chi": 172.793, "glyco_bond": "anti", "C5prime_xyz": [ -1.518, 8.165, 2.036 ], "P_xyz": [ 1.028, 8.448, 1.545 ], "form": ".", "ssZp": 4.788, "Dp": 4.778, "splay_angle": 33.214, "splay_distance": 5.007, "splay_ratio": 0.287, "d22": null, "d64": null, "eta": -159.702, "theta": -119.264, "eta_prime": -165.664, "theta_prime": -120.511, "eta_base": -179.851, "theta_base": -79.085, "v0": 3.918, "v1": -25.868, "v2": 36.794, "v3": -35.548, "v4": 19.946, "amplitude": 37.730, "phase_angle": 12.791, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.179, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 124.224, 218.394, 218.384 ], "x_axis": [ -0.575, 0.301, -0.761 ], "y_axis": [ 0.081, 0.946, 0.313 ], "z_axis": [ 0.814, 0.119, -0.568 ], "quaternion": [ 0.448, 0.108, 0.879, 0.123 ] } }, { "index": 101, "index_chain": 101, "chain_name": "A", "nt_resnum": 103, "nt_name": "U", "nt_code": "U", "nt_id": "///A/103", "linked_nts": [ "///A/102", "///A/104" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -54.676, "beta": 158.332, "gamma": 55.395, "delta": 81.382, "epsilon": -152.273, "zeta": -45.315, "epsilon_zeta": -106.958, "bb_type": "BI", "chi": -174.921, "glyco_bond": "anti", "C5prime_xyz": [ -1.452, 8.511, 1.396 ], "P_xyz": [ 1.136, 8.735, 1.663 ], "form": ".", "ssZp": 4.589, "Dp": 4.601, "splay_angle": 38.690, "splay_distance": 6.306, "splay_ratio": 0.340, "d22": 3.471, "d64": 4.419, "eta": 160.040, "theta": -89.655, "eta_prime": -172.565, "theta_prime": -98.683, "eta_base": -99.606, "theta_base": -55.039, "v0": 2.409, "v1": -24.538, "v2": 36.100, "v3": -35.711, "v4": 21.009, "amplitude": 37.374, "phase_angle": 15.001, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.457, "filter_rmsd": 0.103, "frame": { "rmsd": 0.007, "origin": [ 125.400, 220.109, 213.830 ], "x_axis": [ -0.276, 0.953, -0.129 ], "y_axis": [ 0.472, 0.251, 0.845 ], "z_axis": [ 0.837, 0.172, -0.519 ], "quaternion": [ 0.338, 0.498, 0.715, 0.355 ] } }, { "index": 102, "index_chain": 102, "chain_name": "A", "nt_resnum": 104, "nt_name": "C", "nt_code": "C", "nt_id": "///A/104", "linked_nts": [ "///A/103", "///A/105" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": 156.684, "beta": -164.322, "gamma": 166.033, "delta": 81.735, "epsilon": -109.350, "zeta": -92.591, "epsilon_zeta": -16.759, "bb_type": "--", "chi": 179.420, "glyco_bond": "anti", "C5prime_xyz": [ -1.286, 8.393, 1.749 ], "P_xyz": [ 0.642, 9.962, 0.944 ], "form": "A", "ssZp": 4.680, "Dp": 4.730, "splay_angle": 24.768, "splay_distance": 3.898, "splay_ratio": 0.215, "d22": 4.556, "d64": 4.176, "eta": 157.645, "theta": -155.958, "eta_prime": -170.564, "theta_prime": -150.777, "eta_base": -91.196, "theta_base": -120.291, "v0": 3.443, "v1": -25.144, "v2": 36.116, "v3": -35.098, "v4": 19.961, "amplitude": 37.126, "phase_angle": 13.396, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.478, "filter_rmsd": 0.065, "frame": { "rmsd": 0.008, "origin": [ 127.307, 226.056, 212.959 ], "x_axis": [ 0.317, 0.612, 0.724 ], "y_axis": [ 0.490, -0.760, 0.427 ], "z_axis": [ 0.812, 0.220, -0.541 ], "quaternion": [ 0.064, 0.809, 0.341, 0.475 ] } }, { "index": 103, "index_chain": 103, "chain_name": "A", "nt_resnum": 105, "nt_name": "C", "nt_code": "C", "nt_id": "///A/105", "linked_nts": [ "///A/104", "///A/106" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet", "alpha": -66.131, "beta": 160.523, "gamma": 54.079, "delta": 80.667, "epsilon": -152.754, "zeta": -72.155, "epsilon_zeta": -80.599, "bb_type": "BI", "chi": -164.309, "glyco_bond": "anti", "C5prime_xyz": [ -1.440, 8.732, 0.753 ], "P_xyz": [ 1.149, 9.095, 0.735 ], "form": "A", "ssZp": 4.499, "Dp": 4.601, "splay_angle": 24.034, "splay_distance": 3.870, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 153.777, "theta": -146.270, "eta_prime": 170.826, "theta_prime": -148.164, "eta_base": -146.749, "theta_base": -132.758, "v0": 1.404, "v1": -24.090, "v2": 36.330, "v3": -36.540, "v4": 22.121, "amplitude": 37.895, "phase_angle": 16.521, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.219, "filter_rmsd": 0.057, "frame": { "rmsd": 0.009, "origin": [ 129.997, 228.377, 211.355 ], "x_axis": [ 0.292, -0.052, 0.955 ], "y_axis": [ 0.270, -0.953, -0.134 ], "z_axis": [ 0.917, 0.298, -0.264 ], "quaternion": [ -0.136, 0.792, 0.069, 0.591 ] } }, { "index": 104, "index_chain": 104, "chain_name": "A", "nt_resnum": 106, "nt_name": "G", "nt_code": "G", "nt_id": "///A/106", "linked_nts": [ "///A/105", "///A/107" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor", "alpha": -72.794, "beta": 177.814, "gamma": 58.017, "delta": 79.278, "epsilon": -155.771, "zeta": -75.129, "epsilon_zeta": -80.642, "bb_type": "BI", "chi": -163.670, "glyco_bond": "anti", "C5prime_xyz": [ -1.662, 8.736, 0.703 ], "P_xyz": [ 0.851, 9.421, 0.865 ], "form": "A", "ssZp": 4.520, "Dp": 4.607, "splay_angle": 23.560, "splay_distance": 3.803, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 165.912, "theta": -155.317, "eta_prime": 177.305, "theta_prime": -156.060, "eta_base": -151.654, "theta_base": -141.844, "v0": 0.929, "v1": -24.418, "v2": 37.272, "v3": -37.775, "v4": 23.187, "amplitude": 39.027, "phase_angle": 17.248, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.914, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 132.656, 231.173, 211.054 ], "x_axis": [ 0.250, -0.514, 0.820 ], "y_axis": [ 0.151, -0.816, -0.558 ], "z_axis": [ 0.956, 0.264, -0.126 ], "quaternion": [ -0.278, 0.740, -0.123, 0.600 ] } }, { "index": 105, "index_chain": 105, "chain_name": "A", "nt_resnum": 107, "nt_name": "G", "nt_code": "G", "nt_id": "///A/107", "linked_nts": [ "///A/106", "///A/108" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -71.568, "beta": 179.761, "gamma": 52.525, "delta": 78.845, "epsilon": -147.338, "zeta": -69.974, "epsilon_zeta": -77.364, "bb_type": "BI", "chi": -170.971, "glyco_bond": "anti", "C5prime_xyz": [ -1.649, 8.690, 1.129 ], "P_xyz": [ 0.790, 9.300, 1.839 ], "form": "A", "ssZp": 4.584, "Dp": 4.628, "splay_angle": 25.194, "splay_distance": 3.998, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 165.537, "theta": -144.960, "eta_prime": 171.781, "theta_prime": -141.517, "eta_base": -162.886, "theta_base": -108.089, "v0": 0.250, "v1": -23.682, "v2": 36.833, "v3": -37.675, "v4": 23.605, "amplitude": 38.781, "phase_angle": 18.235, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.916, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 135.310, 233.780, 211.841 ], "x_axis": [ -0.059, -0.864, 0.499 ], "y_axis": [ 0.018, -0.501, -0.865 ], "z_axis": [ 0.998, -0.043, 0.045 ], "quaternion": [ -0.348, 0.591, -0.358, 0.634 ] } }, { "index": 106, "index_chain": 106, "chain_name": "A", "nt_resnum": 108, "nt_name": "A", "nt_code": "A", "nt_id": "///A/108", "linked_nts": [ "///A/107", "///A/109" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -67.511, "beta": 169.804, "gamma": 65.227, "delta": 79.486, "epsilon": -153.404, "zeta": -43.334, "epsilon_zeta": -110.070, "bb_type": "BI", "chi": -164.780, "glyco_bond": "anti", "C5prime_xyz": [ -1.451, 8.726, 0.774 ], "P_xyz": [ 1.105, 9.291, 0.715 ], "form": ".", "ssZp": 4.489, "Dp": 4.584, "splay_angle": 25.511, "splay_distance": 4.503, "splay_ratio": 0.235, "d22": null, "d64": null, "eta": 171.473, "theta": -122.521, "eta_prime": -171.824, "theta_prime": -134.259, "eta_base": -123.687, "theta_base": -116.853, "v0": 0.226, "v1": -23.089, "v2": 35.895, "v3": -36.726, "v4": 23.039, "amplitude": 37.798, "phase_angle": 18.260, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.744, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 138.604, 233.022, 213.975 ], "x_axis": [ 0.022, -0.992, -0.127 ], "y_axis": [ 0.092, 0.128, -0.987 ], "z_axis": [ 0.996, 0.010, 0.094 ], "quaternion": [ 0.558, -0.447, 0.503, -0.486 ] } }, { "index": 107, "index_chain": 107, "chain_name": "A", "nt_resnum": 109, "nt_name": "G", "nt_code": "G", "nt_id": "///A/109", "linked_nts": [ "///A/108", "///A/110" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end", "alpha": -156.251, "beta": 145.181, "gamma": 150.674, "delta": 82.607, "epsilon": -133.933, "zeta": -78.509, "epsilon_zeta": -55.424, "bb_type": "BI", "chi": -174.171, "glyco_bond": "anti", "C5prime_xyz": [ -1.167, 8.410, 1.373 ], "P_xyz": [ -0.016, 10.372, 0.065 ], "form": "A", "ssZp": 4.720, "Dp": 4.763, "splay_angle": 24.967, "splay_distance": 3.734, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 166.374, "theta": -172.001, "eta_prime": -178.924, "theta_prime": -164.706, "eta_base": -139.936, "theta_base": -122.532, "v0": 7.100, "v1": -28.086, "v2": 37.284, "v3": -34.245, "v4": 17.145, "amplitude": 37.654, "phase_angle": 8.038, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.036, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 141.923, 231.017, 216.266 ], "x_axis": [ 0.074, -0.817, -0.572 ], "y_axis": [ 0.160, 0.576, -0.801 ], "z_axis": [ 0.984, -0.032, 0.173 ], "quaternion": [ 0.675, -0.285, 0.577, -0.362 ] } }, { "index": 108, "index_chain": 108, "chain_name": "A", "nt_resnum": 110, "nt_name": "A", "nt_code": "A", "nt_id": "///A/110", "linked_nts": [ "///A/109", "///A/111" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop", "alpha": -63.238, "beta": 173.013, "gamma": 47.683, "delta": 83.664, "epsilon": -143.432, "zeta": -76.257, "epsilon_zeta": -67.175, "bb_type": "BI", "chi": -175.947, "glyco_bond": "anti", "C5prime_xyz": [ -1.192, 8.331, 1.462 ], "P_xyz": [ 1.335, 8.347, 2.136 ], "form": "A", "ssZp": 4.697, "Dp": 4.698, "splay_angle": 27.518, "splay_distance": 4.218, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": 163.248, "theta": -141.418, "eta_prime": 177.104, "theta_prime": -137.836, "eta_base": -129.873, "theta_base": -114.438, "v0": 5.570, "v1": -26.343, "v2": 35.956, "v3": -33.769, "v4": 17.827, "amplitude": 36.520, "phase_angle": 10.085, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.828, "filter_rmsd": 0.040, "frame": { "rmsd": 0.013, "origin": [ 145.120, 229.106, 216.532 ], "x_axis": [ -0.152, -0.161, -0.975 ], "y_axis": [ 0.044, 0.985, -0.169 ], "z_axis": [ 0.987, -0.069, -0.143 ], "quaternion": [ 0.650, -0.039, 0.755, -0.079 ] } }, { "index": 109, "index_chain": 109, "chain_name": "A", "nt_resnum": 111, "nt_name": "U", "nt_code": "U", "nt_id": "///A/111", "linked_nts": [ "///A/110", "///A/112" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate", "alpha": -58.124, "beta": 170.921, "gamma": 55.791, "delta": 83.166, "epsilon": -121.073, "zeta": -69.136, "epsilon_zeta": -51.937, "bb_type": "--", "chi": -169.645, "glyco_bond": "anti", "C5prime_xyz": [ -1.390, 8.579, 1.102 ], "P_xyz": [ 1.179, 8.891, 1.495 ], "form": ".", "ssZp": 4.526, "Dp": 4.696, "splay_angle": 35.507, "splay_distance": 5.557, "splay_ratio": 0.305, "d22": 4.632, "d64": 4.781, "eta": -179.271, "theta": -116.859, "eta_prime": -167.204, "theta_prime": -110.084, "eta_base": -132.879, "theta_base": -63.577, "v0": 2.116, "v1": -23.550, "v2": 34.784, "v3": -34.559, "v4": 20.427, "amplitude": 36.065, "phase_angle": 15.317, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.929, "filter_rmsd": 0.102, "frame": { "rmsd": 0.006, "origin": [ 148.573, 226.881, 215.574 ], "x_axis": [ -0.116, 0.410, -0.905 ], "y_axis": [ 0.068, 0.912, 0.404 ], "z_axis": [ 0.991, -0.014, -0.134 ], "quaternion": [ 0.645, 0.162, 0.735, 0.133 ] } }, { "index": 110, "index_chain": 110, "chain_name": "A", "nt_resnum": 112, "nt_name": "U", "nt_code": "U", "nt_id": "///A/112", "linked_nts": [ "///A/111", "///A/113" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -58.462, "beta": 158.468, "gamma": 67.149, "delta": 82.459, "epsilon": -115.087, "zeta": 162.781, "epsilon_zeta": 82.132, "bb_type": "BII", "chi": -144.978, "glyco_bond": "anti", "C5prime_xyz": [ -1.542, 8.756, -0.400 ], "P_xyz": [ 0.885, 9.046, -1.341 ], "form": ".", "ssZp": 3.481, "Dp": 4.657, "splay_angle": 97.451, "splay_distance": 13.858, "splay_ratio": 0.753, "d22": 9.009, "d64": 10.636, "eta": 176.013, "theta": 104.376, "eta_prime": -157.346, "theta_prime": 114.982, "eta_base": -94.756, "theta_base": 141.678, "v0": -0.285, "v1": -21.597, "v2": 33.955, "v3": -35.070, "v4": 22.309, "amplitude": 35.920, "phase_angle": 19.041, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.433, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 151.493, 229.977, 212.001 ], "x_axis": [ 0.119, 0.976, -0.180 ], "y_axis": [ 0.389, 0.121, 0.913 ], "z_axis": [ 0.913, -0.179, -0.366 ], "quaternion": [ 0.468, 0.584, 0.585, 0.314 ] } }, { "index": 111, "index_chain": 111, "chain_name": "A", "nt_resnum": 113, "nt_name": "U", "nt_code": "U", "nt_id": "///A/113", "linked_nts": [ "///A/112", "///A/114" ], "nt_type": "RNA", "dbn": ")", "summary": "~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,splayed-apart", "alpha": -85.365, "beta": 165.601, "gamma": 35.892, "delta": 84.363, "epsilon": -118.518, "zeta": -84.200, "epsilon_zeta": -34.319, "bb_type": "--", "chi": 168.500, "glyco_bond": "--", "C5prime_xyz": [ -1.578, 8.092, 2.255 ], "P_xyz": [ 0.505, 7.782, 3.815 ], "form": "A", "ssZp": 4.492, "Dp": 4.615, "splay_angle": 22.453, "splay_distance": 3.487, "splay_ratio": 0.195, "d22": 4.705, "d64": 4.214, "eta": -175.770, "theta": -129.068, "eta_prime": 171.707, "theta_prime": -123.950, "eta_base": 155.727, "theta_base": -89.518, "v0": 1.985, "v1": -22.695, "v2": 33.514, "v3": -33.325, "v4": 19.778, "amplitude": 34.763, "phase_angle": 15.406, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.425, "filter_rmsd": 0.106, "frame": { "rmsd": 0.010, "origin": [ 158.686, 219.755, 217.984 ], "x_axis": [ -0.759, 0.075, -0.646 ], "y_axis": [ -0.332, 0.809, 0.484 ], "z_axis": [ 0.560, 0.582, -0.589 ], "quaternion": [ 0.339, -0.072, 0.889, 0.300 ] } }, { "index": 112, "index_chain": 112, "chain_name": "A", "nt_resnum": 114, "nt_name": "C", "nt_code": "C", "nt_id": "///A/114", "linked_nts": [ "///A/113", "///A/115" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper", "alpha": -69.473, "beta": 166.486, "gamma": 54.697, "delta": 84.642, "epsilon": -155.162, "zeta": -68.476, "epsilon_zeta": -86.686, "bb_type": "BI", "chi": -163.796, "glyco_bond": "anti", "C5prime_xyz": [ -1.323, 8.703, 0.773 ], "P_xyz": [ 1.270, 8.921, 1.049 ], "form": "A", "ssZp": 4.384, "Dp": 4.498, "splay_angle": 22.203, "splay_distance": 3.755, "splay_ratio": 0.199, "d22": 4.507, "d64": 4.964, "eta": 155.625, "theta": -141.720, "eta_prime": 175.436, "theta_prime": -144.229, "eta_base": -134.044, "theta_base": -136.098, "v0": 1.699, "v1": -22.530, "v2": 33.550, "v3": -33.515, "v4": 20.083, "amplitude": 34.880, "phase_angle": 15.877, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.481, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 160.298, 220.671, 215.032 ], "x_axis": [ -0.812, 0.573, -0.113 ], "y_axis": [ 0.291, 0.566, 0.771 ], "z_axis": [ 0.506, 0.593, -0.626 ], "quaternion": [ 0.179, 0.249, 0.866, 0.394 ] } }, { "index": 113, "index_chain": 113, "chain_name": "A", "nt_resnum": 115, "nt_name": "C", "nt_code": "C", "nt_id": "///A/115", "linked_nts": [ "///A/114", "///A/116" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,ribose-zipper", "alpha": -70.169, "beta": 172.674, "gamma": 64.905, "delta": 82.365, "epsilon": -143.894, "zeta": -64.374, "epsilon_zeta": -79.520, "bb_type": "BI", "chi": -161.074, "glyco_bond": "anti", "C5prime_xyz": [ -2.003, 8.933, 0.458 ], "P_xyz": [ 0.410, 9.884, 0.744 ], "form": ".", "ssZp": 4.093, "Dp": 4.294, "splay_angle": 30.487, "splay_distance": 4.948, "splay_ratio": 0.263, "d22": null, "d64": null, "eta": 175.586, "theta": -132.956, "eta_prime": -171.284, "theta_prime": -130.174, "eta_base": -149.478, "theta_base": -77.949, "v0": -8.739, "v1": -13.667, "v2": 29.349, "v3": -35.243, "v4": 27.747, "amplitude": 34.890, "phase_angle": 32.733, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.743, "filter_rmsd": 0.059, "frame": { "rmsd": 0.011, "origin": [ 161.316, 221.098, 211.443 ], "x_axis": [ -0.677, 0.699, 0.231 ], "y_axis": [ 0.605, 0.350, 0.715 ], "z_axis": [ 0.419, 0.624, -0.660 ], "quaternion": [ 0.057, 0.398, 0.820, 0.408 ] } }, { "index": 114, "index_chain": 114, "chain_name": "A", "nt_resnum": 116, "nt_name": "G", "nt_code": "G", "nt_id": "///A/116", "linked_nts": [ "///A/115", "///A/117" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate", "alpha": -69.030, "beta": 164.698, "gamma": 59.933, "delta": 82.561, "epsilon": -106.689, "zeta": -129.715, "epsilon_zeta": 23.025, "bb_type": "--", "chi": -152.790, "glyco_bond": "anti", "C5prime_xyz": [ -1.534, 8.836, 0.087 ], "P_xyz": [ 1.020, 9.309, -0.230 ], "form": ".", "ssZp": 3.735, "Dp": 4.596, "splay_angle": 42.879, "splay_distance": 7.155, "splay_ratio": 0.366, "d22": null, "d64": null, "eta": 173.289, "theta": -130.282, "eta_prime": -166.374, "theta_prime": -130.827, "eta_base": -101.823, "theta_base": -138.352, "v0": -1.708, "v1": -20.315, "v2": 33.350, "v3": -35.278, "v4": 23.331, "amplitude": 35.794, "phase_angle": 21.292, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.881, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 161.595, 225.972, 210.638 ], "x_axis": [ 0.089, 0.678, 0.730 ], "y_axis": [ 0.930, -0.318, 0.183 ], "z_axis": [ 0.356, 0.663, -0.659 ], "quaternion": [ -0.167, 0.719, 0.559, 0.378 ] } }, { "index": 115, "index_chain": 115, "chain_name": "A", "nt_resnum": 117, "nt_name": "A", "nt_code": "A", "nt_id": "///A/117", "linked_nts": [ "///A/116", "///A/118" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop", "alpha": 54.669, "beta": 148.398, "gamma": -58.883, "delta": 81.341, "epsilon": -168.101, "zeta": 38.618, "epsilon_zeta": 153.281, "bb_type": "--", "chi": -72.698, "glyco_bond": "--", "C5prime_xyz": [ -2.981, 6.477, -3.347 ], "P_xyz": [ -2.097, 8.014, -5.262 ], "form": ".", "ssZp": -0.741, "Dp": 4.475, "splay_angle": 28.610, "splay_distance": 5.030, "splay_ratio": 0.248, "d22": null, "d64": null, "eta": 154.225, "theta": -53.765, "eta_prime": 155.234, "theta_prime": -60.426, "eta_base": 154.931, "theta_base": -54.424, "v0": 1.062, "v1": -23.280, "v2": 35.326, "v3": -35.733, "v4": 21.890, "amplitude": 36.944, "phase_angle": 17.020, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.011, "origin": [ 163.831, 230.538, 205.603 ], "x_axis": [ 0.001, 0.602, 0.798 ], "y_axis": [ 0.983, -0.145, 0.109 ], "z_axis": [ 0.181, 0.785, -0.593 ], "quaternion": [ -0.256, 0.659, 0.601, 0.371 ] } }, { "index": 116, "index_chain": 116, "chain_name": "A", "nt_resnum": 118, "nt_name": "A", "nt_code": "A", "nt_id": "///A/118", "linked_nts": [ "///A/117", "///A/119" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop", "alpha": 86.574, "beta": 169.704, "gamma": 177.069, "delta": 147.444, "epsilon": -71.845, "zeta": 103.390, "epsilon_zeta": 184.766, "bb_type": "--", "chi": -127.329, "glyco_bond": "anti", "C5prime_xyz": [ -2.164, 8.633, -0.832 ], "P_xyz": [ -0.840, 10.008, -2.635 ], "form": ".", "ssZp": 0.151, "Dp": 0.250, "splay_angle": 46.851, "splay_distance": 7.612, "splay_ratio": 0.398, "d22": null, "d64": null, "eta": 166.043, "theta": 84.454, "eta_prime": -166.394, "theta_prime": 86.066, "eta_base": -153.968, "theta_base": 52.516, "v0": -24.221, "v1": 38.084, "v2": -36.597, "v3": 23.569, "v4": 0.160, "amplitude": 38.718, "phase_angle": 160.949, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "5q", "suiteness": 0.019, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 163.972, 229.301, 210.477 ], "x_axis": [ -0.499, -0.454, -0.738 ], "y_axis": [ 0.856, -0.394, -0.336 ], "z_axis": [ -0.138, -0.799, 0.585 ], "quaternion": [ -0.416, -0.278, -0.361, 0.787 ] } }, { "index": 117, "index_chain": 117, "chain_name": "A", "nt_resnum": 119, "nt_name": "U", "nt_code": "U", "nt_id": "///A/119", "linked_nts": [ "///A/118", "///A/120" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-donor,splayed-apart", "alpha": 158.631, "beta": -150.183, "gamma": 50.398, "delta": 148.368, "epsilon": -138.016, "zeta": 107.920, "epsilon_zeta": 114.064, "bb_type": "--", "chi": -172.718, "glyco_bond": "anti", "C5prime_xyz": [ -2.148, 8.400, 1.554 ], "P_xyz": [ -1.407, 8.228, 4.059 ], "form": ".", "ssZp": 0.754, "Dp": 1.626, "splay_angle": 146.053, "splay_distance": 17.447, "splay_ratio": 0.956, "d22": null, "d64": null, "eta": 110.923, "theta": 118.654, "eta_prime": 110.068, "theta_prime": 74.825, "eta_base": 89.431, "theta_base": -15.980, "v0": -22.721, "v1": 37.498, "v2": -37.076, "v3": 24.943, "v4": -1.595, "amplitude": 38.657, "phase_angle": 163.555, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.009, "origin": [ 168.590, 233.685, 206.304 ], "x_axis": [ 0.345, -0.443, -0.828 ], "y_axis": [ 0.855, -0.216, 0.472 ], "z_axis": [ -0.388, -0.870, 0.304 ], "quaternion": [ 0.598, 0.561, 0.184, -0.542 ] } }, { "index": 118, "index_chain": 118, "chain_name": "A", "nt_resnum": 120, "nt_name": "G", "nt_code": "G", "nt_id": "///A/120", "linked_nts": [ "///A/119", "///A/121" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": 54.666, "beta": -175.591, "gamma": 68.549, "delta": 83.761, "epsilon": -153.220, "zeta": -65.064, "epsilon_zeta": -88.156, "bb_type": "BI", "chi": -179.761, "glyco_bond": "anti", "C5prime_xyz": [ -1.229, 8.377, 1.667 ], "P_xyz": [ 1.326, 8.469, 2.244 ], "form": "A", "ssZp": 4.603, "Dp": 4.612, "splay_angle": 23.121, "splay_distance": 3.535, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": -15.211, "theta": -135.915, "eta_prime": -7.754, "theta_prime": -136.440, "eta_base": 84.784, "theta_base": -107.842, "v0": 4.210, "v1": -25.104, "v2": 35.202, "v3": -33.748, "v4": 18.656, "amplitude": 35.993, "phase_angle": 12.031, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6d", "suiteness": 0.349, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 175.058, 230.330, 222.157 ], "x_axis": [ -0.883, -0.468, -0.043 ], "y_axis": [ -0.346, 0.708, -0.615 ], "z_axis": [ 0.318, -0.529, -0.787 ], "quaternion": [ 0.098, -0.221, 0.919, -0.311 ] } }, { "index": 119, "index_chain": 119, "chain_name": "A", "nt_resnum": 121, "nt_name": "G", "nt_code": "G", "nt_id": "///A/121", "linked_nts": [ "///A/120", "///A/122" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -100.283, "beta": -167.311, "gamma": 67.861, "delta": 82.628, "epsilon": -151.668, "zeta": -65.153, "epsilon_zeta": -86.515, "bb_type": "BI", "chi": -170.535, "glyco_bond": "anti", "C5prime_xyz": [ -1.280, 8.553, 1.139 ], "P_xyz": [ 1.289, 8.760, 1.583 ], "form": "A", "ssZp": 4.629, "Dp": 4.653, "splay_angle": 21.901, "splay_distance": 3.626, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 159.001, "theta": -139.165, "eta_prime": 173.776, "theta_prime": -139.431, "eta_base": -138.953, "theta_base": -120.519, "v0": 4.539, "v1": -26.146, "v2": 36.545, "v3": -34.930, "v4": 19.198, "amplitude": 37.330, "phase_angle": 11.774, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.134, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 175.769, 227.190, 220.699 ], "x_axis": [ -0.927, 0.173, -0.333 ], "y_axis": [ 0.318, 0.833, -0.454 ], "z_axis": [ 0.199, -0.526, -0.827 ], "quaternion": [ 0.141, 0.130, 0.947, -0.259 ] } }, { "index": 120, "index_chain": 120, "chain_name": "A", "nt_resnum": 122, "nt_name": "G", "nt_code": "G", "nt_id": "///A/122", "linked_nts": [ "///A/121", "///A/123" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop", "alpha": -77.495, "beta": 170.573, "gamma": 72.928, "delta": 80.969, "epsilon": -150.700, "zeta": -62.801, "epsilon_zeta": -87.899, "bb_type": "BI", "chi": -171.134, "glyco_bond": "anti", "C5prime_xyz": [ -1.833, 8.761, 1.088 ], "P_xyz": [ 0.652, 9.555, 1.257 ], "form": ".", "ssZp": 4.427, "Dp": 4.465, "splay_angle": 28.878, "splay_distance": 4.483, "splay_ratio": 0.249, "d22": null, "d64": null, "eta": 171.662, "theta": -137.654, "eta_prime": -171.416, "theta_prime": -136.856, "eta_base": -134.833, "theta_base": -86.757, "v0": -4.592, "v1": -18.177, "v2": 32.565, "v3": -36.162, "v4": 25.727, "amplitude": 36.150, "phase_angle": 25.732, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.388, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 174.857, 224.082, 219.067 ], "x_axis": [ -0.662, 0.585, -0.469 ], "y_axis": [ 0.740, 0.609, -0.286 ], "z_axis": [ 0.118, -0.536, -0.836 ], "quaternion": [ 0.166, 0.376, 0.881, -0.233 ] } }, { "index": 121, "index_chain": 121, "chain_name": "A", "nt_resnum": 123, "nt_name": "G", "nt_code": "G", "nt_id": "///A/123", "linked_nts": [ "///A/122", "///A/124" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -71.684, "beta": 174.055, "gamma": 56.650, "delta": 84.977, "epsilon": -154.636, "zeta": -108.281, "epsilon_zeta": -46.355, "bb_type": "BI", "chi": -166.993, "glyco_bond": "anti", "C5prime_xyz": [ -1.236, 8.645, 0.977 ], "P_xyz": [ 1.327, 8.829, 1.482 ], "form": ".", "ssZp": 4.423, "Dp": 4.496, "splay_angle": 116.903, "splay_distance": 15.744, "splay_ratio": 0.852, "d22": null, "d64": null, "eta": 165.169, "theta": -163.817, "eta_prime": -173.184, "theta_prime": 162.990, "eta_base": -103.399, "theta_base": 122.711, "v0": 1.611, "v1": -21.704, "v2": 32.386, "v3": -32.373, "v4": 19.468, "amplitude": 33.686, "phase_angle": 15.971, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.893, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 173.879, 223.684, 214.711 ], "x_axis": [ 0.192, 0.877, -0.440 ], "y_axis": [ 0.959, -0.072, 0.274 ], "z_axis": [ 0.208, -0.474, -0.855 ], "quaternion": [ 0.257, 0.728, 0.631, -0.080 ] } }, { "index": 122, "index_chain": 122, "chain_name": "A", "nt_resnum": 124, "nt_name": "A", "nt_code": "A", "nt_id": "///A/124", "linked_nts": [ "///A/123", "///A/125" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,hairpin-loop,phosphate,splayed-apart", "alpha": -179.564, "beta": 178.179, "gamma": 54.397, "delta": 147.011, "epsilon": -93.446, "zeta": -70.869, "epsilon_zeta": -22.576, "bb_type": "--", "chi": -111.878, "glyco_bond": "anti", "C5prime_xyz": [ -2.201, 8.358, -1.608 ], "P_xyz": [ 0.170, 9.419, -1.311 ], "form": ".", "ssZp": 0.661, "Dp": 0.708, "splay_angle": 145.890, "splay_distance": 18.817, "splay_ratio": 0.956, "d22": null, "d64": null, "eta": 75.700, "theta": -49.333, "eta_prime": 89.629, "theta_prime": -91.580, "eta_base": 60.041, "theta_base": -142.758, "v0": -23.249, "v1": 37.206, "v2": -36.203, "v3": 23.706, "v4": -0.513, "amplitude": 38.069, "phase_angle": 161.985, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1z", "suiteness": 0.456, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 180.741, 210.803, 220.615 ], "x_axis": [ 0.692, 0.484, 0.535 ], "y_axis": [ -0.107, 0.803, -0.587 ], "z_axis": [ -0.713, 0.349, 0.607 ], "quaternion": [ 0.881, -0.266, -0.354, 0.168 ] } }, { "index": 123, "index_chain": 123, "chain_name": "A", "nt_resnum": 125, "nt_name": "A", "nt_code": "A", "nt_id": "///A/125", "linked_nts": [ "///A/124", "///A/126" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,A-minor,ribose-zipper,phosphate,splayed-apart", "alpha": -55.911, "beta": -166.950, "gamma": 155.954, "delta": 86.645, "epsilon": -125.181, "zeta": -106.038, "epsilon_zeta": -19.143, "bb_type": "--", "chi": -138.763, "glyco_bond": "anti", "C5prime_xyz": [ -1.339, 8.664, -0.658 ], "P_xyz": [ 0.221, 9.257, -2.666 ], "form": ".", "ssZp": 3.251, "Dp": 4.518, "splay_angle": 21.370, "splay_distance": 3.674, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": -77.682, "theta": -171.988, "eta_prime": -29.249, "theta_prime": -167.174, "eta_base": 32.951, "theta_base": -134.919, "v0": 0.669, "v1": -20.066, "v2": 30.712, "v3": -31.201, "v4": 19.318, "amplitude": 32.200, "phase_angle": 17.490, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "2h", "suiteness": 0.379, "filter_rmsd": 0.042, "frame": { "rmsd": 0.012, "origin": [ 166.377, 216.293, 209.770 ], "x_axis": [ -0.038, -0.947, -0.319 ], "y_axis": [ 0.781, -0.228, 0.582 ], "z_axis": [ -0.624, -0.227, 0.748 ], "quaternion": [ 0.609, 0.332, -0.125, -0.710 ] } }, { "index": 124, "index_chain": 124, "chain_name": "A", "nt_resnum": 126, "nt_name": "A", "nt_code": "A", "nt_id": "///A/126", "linked_nts": [ "///A/125", "///A/127" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,ribose-zipper,cap-acceptor,splayed-apart", "alpha": -48.555, "beta": 134.064, "gamma": 58.315, "delta": 84.818, "epsilon": -102.845, "zeta": 82.667, "epsilon_zeta": 174.489, "bb_type": "--", "chi": -135.063, "glyco_bond": "anti", "C5prime_xyz": [ -1.525, 8.610, -0.957 ], "P_xyz": [ 0.783, 8.220, -2.123 ], "form": ".", "ssZp": 2.685, "Dp": 4.615, "splay_angle": 91.775, "splay_distance": 14.932, "splay_ratio": 0.718, "d22": null, "d64": null, "eta": 177.769, "theta": 73.488, "eta_prime": -170.515, "theta_prime": 50.571, "eta_base": -136.082, "theta_base": 48.609, "v0": 0.835, "v1": -21.844, "v2": 33.283, "v3": -33.741, "v4": 20.807, "amplitude": 34.856, "phase_angle": 17.282, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.761, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 165.097, 214.548, 212.739 ], "x_axis": [ 0.357, -0.932, -0.058 ], "y_axis": [ 0.548, 0.159, 0.821 ], "z_axis": [ -0.756, -0.325, 0.568 ], "quaternion": [ 0.722, 0.397, -0.242, -0.513 ] } }, { "index": 125, "index_chain": 125, "chain_name": "A", "nt_resnum": 127, "nt_name": "C", "nt_code": "C", "nt_id": "///A/127", "linked_nts": [ "///A/126", "///A/128" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,helix-end,stem-end,coaxial-stack,hairpin-loop,splayed-apart", "alpha": 83.584, "beta": 179.060, "gamma": 179.983, "delta": 79.759, "epsilon": -158.823, "zeta": -71.052, "epsilon_zeta": -87.771, "bb_type": "BI", "chi": -153.166, "glyco_bond": "anti", "C5prime_xyz": [ -1.437, 8.803, 0.068 ], "P_xyz": [ -0.822, 10.562, -1.779 ], "form": "A", "ssZp": 4.275, "Dp": 4.590, "splay_angle": 25.366, "splay_distance": 4.054, "splay_ratio": 0.221, "d22": 4.064, "d64": 4.359, "eta": 134.760, "theta": 172.814, "eta_prime": 147.266, "theta_prime": 179.561, "eta_base": 177.132, "theta_base": -155.120, "v0": 1.982, "v1": -25.432, "v2": 37.883, "v3": -37.725, "v4": 22.534, "amplitude": 39.358, "phase_angle": 15.733, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "5n", "suiteness": 0.402, "filter_rmsd": 0.058, "frame": { "rmsd": 0.009, "origin": [ 174.791, 224.191, 218.738 ], "x_axis": [ -0.684, 0.624, -0.378 ], "y_axis": [ -0.726, -0.535, 0.432 ], "z_axis": [ 0.068, 0.570, 0.819 ], "quaternion": [ 0.387, -0.089, 0.288, 0.871 ] } }, { "index": 126, "index_chain": 126, "chain_name": "A", "nt_resnum": 128, "nt_name": "C", "nt_code": "C", "nt_id": "///A/128", "linked_nts": [ "///A/127", "///A/129" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -68.241, "beta": 173.011, "gamma": 62.824, "delta": 81.509, "epsilon": -156.152, "zeta": -68.793, "epsilon_zeta": -87.359, "bb_type": "BI", "chi": -169.693, "glyco_bond": "anti", "C5prime_xyz": [ -1.493, 8.741, 1.055 ], "P_xyz": [ 1.053, 9.259, 1.416 ], "form": "A", "ssZp": 4.463, "Dp": 4.489, "splay_angle": 24.826, "splay_distance": 3.900, "splay_ratio": 0.216, "d22": 4.544, "d64": 4.546, "eta": 172.546, "theta": -146.890, "eta_prime": -175.470, "theta_prime": -146.824, "eta_base": -142.205, "theta_base": -118.116, "v0": -1.664, "v1": -20.527, "v2": 33.584, "v3": -35.478, "v4": 23.441, "amplitude": 36.018, "phase_angle": 21.183, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.802, "filter_rmsd": 0.061, "frame": { "rmsd": 0.006, "origin": [ 175.560, 227.564, 220.853 ], "x_axis": [ -0.919, 0.119, -0.377 ], "y_axis": [ -0.316, -0.795, 0.519 ], "z_axis": [ -0.238, 0.595, 0.768 ], "quaternion": [ 0.117, -0.165, 0.299, 0.933 ] } }, { "index": 127, "index_chain": 127, "chain_name": "A", "nt_resnum": 129, "nt_name": "C", "nt_code": "C", "nt_id": "///A/129", "linked_nts": [ "///A/128", "///A/130" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -72.738, "beta": -179.139, "gamma": 55.972, "delta": 81.946, "epsilon": -167.732, "zeta": -75.453, "epsilon_zeta": -92.279, "bb_type": "BI", "chi": -164.447, "glyco_bond": "anti", "C5prime_xyz": [ -1.219, 8.707, 0.782 ], "P_xyz": [ 1.340, 9.050, 1.203 ], "form": ".", "ssZp": 4.431, "Dp": 4.476, "splay_angle": 26.732, "splay_distance": 5.113, "splay_ratio": 0.259, "d22": null, "d64": null, "eta": 166.532, "theta": -130.843, "eta_prime": -178.347, "theta_prime": -145.062, "eta_base": -133.346, "theta_base": -155.872, "v0": 1.979, "v1": -23.928, "v2": 35.536, "v3": -35.345, "v4": 21.038, "amplitude": 36.890, "phase_angle": 15.571, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.906, "filter_rmsd": 0.062, "frame": { "rmsd": 0.008, "origin": [ 174.566, 230.906, 222.600 ], "x_axis": [ -0.920, -0.391, -0.023 ], "y_axis": [ 0.294, -0.729, 0.618 ], "z_axis": [ -0.258, 0.562, 0.786 ], "quaternion": [ -0.185, -0.076, 0.319, 0.927 ] } }, { "index": 128, "index_chain": 128, "chain_name": "A", "nt_resnum": 130, "nt_name": "A", "nt_code": "A", "nt_id": "///A/130", "linked_nts": [ "///A/129", "///A/131" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": 120.920, "beta": -161.705, "gamma": -135.572, "delta": 82.028, "epsilon": -134.742, "zeta": -84.178, "epsilon_zeta": -50.565, "bb_type": "BI", "chi": 179.684, "glyco_bond": "anti", "C5prime_xyz": [ -1.471, 8.429, 1.683 ], "P_xyz": [ -0.796, 10.943, 1.403 ], "form": "A", "ssZp": 4.649, "Dp": 4.654, "splay_angle": 24.392, "splay_distance": 3.788, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": -174.944, "theta": 171.776, "eta_prime": -171.886, "theta_prime": -173.426, "eta_base": -166.338, "theta_base": -132.955, "v0": 0.681, "v1": -22.407, "v2": 34.376, "v3": -34.944, "v4": 21.636, "amplitude": 36.057, "phase_angle": 17.566, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.044, "frame": { "rmsd": 0.011, "origin": [ 173.928, 235.973, 222.348 ], "x_axis": [ -0.911, -0.402, 0.096 ], "y_axis": [ 0.366, -0.677, 0.638 ], "z_axis": [ -0.191, 0.616, 0.764 ], "quaternion": [ -0.210, -0.026, 0.343, 0.915 ] } }, { "index": 129, "index_chain": 129, "chain_name": "A", "nt_resnum": 131, "nt_name": "C", "nt_code": "C", "nt_id": "///A/131", "linked_nts": [ "///A/130", "///A/132" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -54.108, "beta": 163.067, "gamma": 48.166, "delta": 80.999, "epsilon": -151.267, "zeta": -72.565, "epsilon_zeta": -78.702, "bb_type": "BI", "chi": -169.877, "glyco_bond": "anti", "C5prime_xyz": [ -1.381, 8.651, 1.110 ], "P_xyz": [ 1.182, 8.912, 1.529 ], "form": "A", "ssZp": 4.575, "Dp": 4.610, "splay_angle": 20.294, "splay_distance": 3.186, "splay_ratio": 0.178, "d22": 4.424, "d64": 4.067, "eta": 165.133, "theta": -145.405, "eta_prime": -179.443, "theta_prime": -144.626, "eta_base": -133.618, "theta_base": -119.599, "v0": 1.807, "v1": -24.242, "v2": 36.190, "v3": -36.119, "v4": 21.621, "amplitude": 37.626, "phase_angle": 15.882, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.733, "filter_rmsd": 0.061, "frame": { "rmsd": 0.006, "origin": [ 172.085, 238.815, 224.044 ], "x_axis": [ -0.507, -0.742, 0.439 ], "y_axis": [ 0.843, -0.320, 0.433 ], "z_axis": [ -0.181, 0.589, 0.787 ], "quaternion": [ -0.490, 0.080, 0.316, 0.809 ] } }, { "index": 130, "index_chain": 130, "chain_name": "A", "nt_resnum": 132, "nt_name": "C", "nt_code": "C", "nt_id": "///A/132", "linked_nts": [ "///A/131", "///A/133" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -64.001, "beta": -175.998, "gamma": 43.648, "delta": 82.740, "epsilon": -167.547, "zeta": -84.279, "epsilon_zeta": -83.268, "bb_type": "BI", "chi": -156.212, "glyco_bond": "anti", "C5prime_xyz": [ -1.090, 8.710, 0.334 ], "P_xyz": [ 1.441, 9.021, 0.929 ], "form": "A", "ssZp": 4.304, "Dp": 4.483, "splay_angle": 21.738, "splay_distance": 3.522, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 165.607, "theta": -138.850, "eta_prime": 177.491, "theta_prime": -146.293, "eta_base": -142.908, "theta_base": -131.276, "v0": 3.826, "v1": -24.895, "v2": 35.403, "v3": -34.175, "v4": 19.151, "amplitude": 36.295, "phase_angle": 12.725, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.799, "filter_rmsd": 0.064, "frame": { "rmsd": 0.006, "origin": [ 170.007, 240.438, 225.832 ], "x_axis": [ 0.118, -0.862, 0.493 ], "y_axis": [ 0.950, 0.242, 0.196 ], "z_axis": [ -0.288, 0.445, 0.848 ], "quaternion": [ 0.743, -0.084, -0.263, -0.610 ] } }, { "index": 131, "index_chain": 131, "chain_name": "A", "nt_resnum": 133, "nt_name": "A", "nt_code": "A", "nt_id": "///A/133", "linked_nts": [ "///A/132", "///A/134" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 166.487, "beta": -153.730, "gamma": 155.235, "delta": 80.365, "epsilon": -119.842, "zeta": -85.962, "epsilon_zeta": -33.880, "bb_type": "--", "chi": 173.385, "glyco_bond": "anti", "C5prime_xyz": [ -1.370, 8.177, 2.037 ], "P_xyz": [ 0.857, 9.368, 1.379 ], "form": "A", "ssZp": 4.756, "Dp": 4.764, "splay_angle": 23.382, "splay_distance": 3.638, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 157.484, "theta": -148.567, "eta_prime": 169.288, "theta_prime": -147.715, "eta_base": -158.563, "theta_base": -115.941, "v0": 4.169, "v1": -26.110, "v2": 37.053, "v3": -35.687, "v4": 19.843, "amplitude": 37.951, "phase_angle": 12.485, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.188, "filter_rmsd": 0.044, "frame": { "rmsd": 0.013, "origin": [ 167.524, 241.317, 228.170 ], "x_axis": [ 0.582, -0.768, 0.266 ], "y_axis": [ 0.801, 0.598, -0.025 ], "z_axis": [ -0.140, 0.228, 0.964 ], "quaternion": [ 0.887, -0.071, -0.114, -0.442 ] } }, { "index": 132, "index_chain": 132, "chain_name": "A", "nt_resnum": 134, "nt_name": "C", "nt_code": "C", "nt_id": "///A/134", "linked_nts": [ "///A/133", "///A/135" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -57.570, "beta": 162.482, "gamma": 49.411, "delta": 78.531, "epsilon": -150.267, "zeta": -70.981, "epsilon_zeta": -79.286, "bb_type": "BI", "chi": -170.377, "glyco_bond": "anti", "C5prime_xyz": [ -1.389, 8.631, 1.124 ], "P_xyz": [ 1.186, 8.990, 1.332 ], "form": "A", "ssZp": 4.658, "Dp": 4.675, "splay_angle": 22.346, "splay_distance": 3.500, "splay_ratio": 0.198, "d22": 4.200, "d64": 4.375, "eta": 157.975, "theta": -145.432, "eta_prime": 174.538, "theta_prime": -145.158, "eta_base": -135.460, "theta_base": -119.294, "v0": 3.138, "v1": -26.603, "v2": 38.658, "v3": -37.893, "v4": 21.863, "amplitude": 39.870, "phase_angle": 14.159, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.489, "filter_rmsd": 0.058, "frame": { "rmsd": 0.008, "origin": [ 166.581, 240.120, 231.474 ], "x_axis": [ 0.967, -0.227, 0.117 ], "y_axis": [ 0.243, 0.960, -0.137 ], "z_axis": [ -0.081, 0.161, 0.984 ], "quaternion": [ 0.989, -0.075, -0.050, -0.119 ] } }, { "index": 133, "index_chain": 133, "chain_name": "A", "nt_resnum": 135, "nt_name": "U", "nt_code": "U", "nt_id": "///A/135", "linked_nts": [ "///A/134", "///A/136" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -68.887, "beta": 173.880, "gamma": 58.169, "delta": 79.257, "epsilon": -152.320, "zeta": -77.141, "epsilon_zeta": -75.179, "bb_type": "BI", "chi": -168.165, "glyco_bond": "anti", "C5prime_xyz": [ -1.460, 8.598, 0.996 ], "P_xyz": [ 1.115, 9.070, 1.104 ], "form": "A", "ssZp": 4.639, "Dp": 4.670, "splay_angle": 30.565, "splay_distance": 4.672, "splay_ratio": 0.266, "d22": 4.664, "d64": 5.051, "eta": 166.088, "theta": -153.108, "eta_prime": 179.990, "theta_prime": -151.283, "eta_base": -136.396, "theta_base": -129.814, "v0": 3.784, "v1": -26.817, "v2": 38.436, "v3": -37.262, "v4": 21.089, "amplitude": 39.480, "phase_angle": 13.202, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.936, "filter_rmsd": 0.100, "frame": { "rmsd": 0.006, "origin": [ 166.940, 238.717, 234.660 ], "x_axis": [ 0.944, 0.330, -0.011 ], "y_axis": [ -0.329, 0.939, -0.100 ], "z_axis": [ -0.022, 0.099, 0.995 ], "quaternion": [ 0.985, -0.051, -0.003, 0.167 ] } }, { "index": 134, "index_chain": 134, "chain_name": "A", "nt_resnum": 136, "nt_name": "C", "nt_code": "C", "nt_id": "///A/136", "linked_nts": [ "///A/135", "///A/137" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -59.464, "beta": -179.347, "gamma": 52.472, "delta": 81.518, "epsilon": -135.985, "zeta": -70.383, "epsilon_zeta": -65.602, "bb_type": "BI", "chi": -173.949, "glyco_bond": "anti", "C5prime_xyz": [ -1.333, 8.548, 1.354 ], "P_xyz": [ 1.152, 8.789, 2.138 ], "form": ".", "ssZp": 4.673, "Dp": 4.706, "splay_angle": 26.811, "splay_distance": 4.054, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": -179.754, "theta": -132.962, "eta_prime": -173.578, "theta_prime": -128.431, "eta_base": -144.374, "theta_base": -74.968, "v0": 2.901, "v1": -24.912, "v2": 36.242, "v3": -35.550, "v4": 20.574, "amplitude": 37.391, "phase_angle": 14.241, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.934, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 168.046, 237.426, 239.012 ], "x_axis": [ 0.636, 0.705, -0.313 ], "y_axis": [ -0.771, 0.596, -0.223 ], "z_axis": [ 0.029, 0.384, 0.923 ], "quaternion": [ 0.888, -0.171, 0.096, 0.416 ] } }, { "index": 135, "index_chain": 135, "chain_name": "A", "nt_resnum": 137, "nt_name": "G", "nt_code": "G", "nt_id": "///A/137", "linked_nts": [ "///A/136", "///A/138" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -65.268, "beta": 165.860, "gamma": 54.463, "delta": 84.713, "epsilon": -143.809, "zeta": -82.100, "epsilon_zeta": -61.710, "bb_type": "BI", "chi": -173.948, "glyco_bond": "anti", "C5prime_xyz": [ -1.213, 8.471, 1.378 ], "P_xyz": [ 1.368, 8.467, 1.833 ], "form": "A", "ssZp": 4.585, "Dp": 4.631, "splay_angle": 23.021, "splay_distance": 3.652, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 161.342, "theta": -146.253, "eta_prime": -177.021, "theta_prime": -146.985, "eta_base": -103.441, "theta_base": -141.356, "v0": 4.578, "v1": -25.026, "v2": 34.780, "v3": -33.123, "v4": 18.029, "amplitude": 35.477, "phase_angle": 11.382, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.880, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 169.611, 240.635, 240.932 ], "x_axis": [ -0.245, 0.815, -0.526 ], "y_axis": [ -0.970, -0.210, 0.126 ], "z_axis": [ -0.007, 0.541, 0.841 ], "quaternion": [ 0.589, -0.176, 0.220, 0.758 ] } }, { "index": 136, "index_chain": 136, "chain_name": "A", "nt_resnum": 138, "nt_name": "U", "nt_code": "U", "nt_id": "///A/138", "linked_nts": [ "///A/137", "///A/139" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-acceptor", "alpha": -66.147, "beta": 172.291, "gamma": 53.483, "delta": 80.641, "epsilon": -136.841, "zeta": -58.770, "epsilon_zeta": -78.070, "bb_type": "BI", "chi": -162.493, "glyco_bond": "anti", "C5prime_xyz": [ -1.441, 8.721, 0.674 ], "P_xyz": [ 1.111, 9.220, 0.932 ], "form": ".", "ssZp": 4.438, "Dp": 4.671, "splay_angle": 76.499, "splay_distance": 10.897, "splay_ratio": 0.619, "d22": null, "d64": null, "eta": 169.051, "theta": -108.227, "eta_prime": 177.109, "theta_prime": -153.347, "eta_base": -165.081, "theta_base": 145.690, "v0": 1.081, "v1": -23.482, "v2": 35.724, "v3": -36.080, "v4": 22.086, "amplitude": 37.355, "phase_angle": 16.995, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.892, "filter_rmsd": 0.104, "frame": { "rmsd": 0.005, "origin": [ 171.962, 241.888, 243.431 ], "x_axis": [ -0.617, 0.626, -0.478 ], "y_axis": [ -0.786, -0.459, 0.413 ], "z_axis": [ 0.039, 0.631, 0.775 ], "quaternion": [ 0.418, -0.130, 0.309, 0.844 ] } }, { "index": 137, "index_chain": 137, "chain_name": "A", "nt_resnum": 139, "nt_name": "A", "nt_code": "A", "nt_id": "///A/139", "linked_nts": [ "///A/138", "///A/140" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop", "alpha": 170.488, "beta": 148.805, "gamma": 42.631, "delta": 84.138, "epsilon": -128.069, "zeta": -76.470, "epsilon_zeta": -51.599, "bb_type": "BI", "chi": 175.605, "glyco_bond": "anti", "C5prime_xyz": [ -1.606, 8.246, 1.914 ], "P_xyz": [ 0.894, 8.097, 2.695 ], "form": "A", "ssZp": 4.622, "Dp": 4.652, "splay_angle": 23.278, "splay_distance": 3.619, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 13.385, "theta": -126.891, "eta_prime": 41.052, "theta_prime": -127.320, "eta_base": 20.944, "theta_base": -91.438, "v0": 1.997, "v1": -22.598, "v2": 33.384, "v3": -33.212, "v4": 19.681, "amplitude": 34.627, "phase_angle": 15.399, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.796, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 176.198, 236.892, 252.140 ], "x_axis": [ -0.426, -0.853, 0.303 ], "y_axis": [ -0.857, 0.487, 0.167 ], "z_axis": [ -0.290, -0.189, -0.938 ], "quaternion": [ -0.176, -0.506, 0.844, -0.006 ] } }, { "index": 138, "index_chain": 138, "chain_name": "A", "nt_resnum": 140, "nt_name": "A", "nt_code": "A", "nt_id": "///A/140", "linked_nts": [ "///A/139", "///A/141" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,A-minor,ribose-zipper,cap-donor,phosphate", "alpha": -68.616, "beta": 160.012, "gamma": 59.470, "delta": 79.796, "epsilon": -142.652, "zeta": -76.202, "epsilon_zeta": -66.450, "bb_type": "BI", "chi": -174.530, "glyco_bond": "anti", "C5prime_xyz": [ -1.572, 8.512, 1.335 ], "P_xyz": [ 0.988, 8.972, 1.415 ], "form": "A", "ssZp": 4.674, "Dp": 4.689, "splay_angle": 25.906, "splay_distance": 3.997, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 157.310, "theta": -142.699, "eta_prime": 177.275, "theta_prime": -142.647, "eta_base": -122.508, "theta_base": -111.870, "v0": 1.864, "v1": -24.762, "v2": 36.929, "v3": -36.913, "v4": 22.084, "amplitude": 38.398, "phase_angle": 15.898, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.700, "filter_rmsd": 0.038, "frame": { "rmsd": 0.007, "origin": [ 175.562, 234.525, 249.476 ], "x_axis": [ -0.904, -0.299, 0.307 ], "y_axis": [ -0.340, 0.936, -0.089 ], "z_axis": [ -0.261, -0.185, -0.947 ], "quaternion": [ -0.146, -0.164, 0.973, -0.070 ] } }, { "index": 139, "index_chain": 139, "chain_name": "A", "nt_resnum": 141, "nt_name": "U", "nt_code": "U", "nt_id": "///A/141", "linked_nts": [ "///A/140", "///A/142" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,ribose-zipper", "alpha": -56.386, "beta": 165.217, "gamma": 53.429, "delta": 78.252, "epsilon": -124.425, "zeta": -70.126, "epsilon_zeta": -54.299, "bb_type": "--", "chi": -172.034, "glyco_bond": "anti", "C5prime_xyz": [ -1.403, 8.549, 1.218 ], "P_xyz": [ 1.171, 8.945, 1.361 ], "form": ".", "ssZp": 4.706, "Dp": 4.810, "splay_angle": 41.747, "splay_distance": 6.145, "splay_ratio": 0.356, "d22": null, "d64": null, "eta": 172.902, "theta": -124.397, "eta_prime": -173.998, "theta_prime": -117.885, "eta_base": -126.746, "theta_base": -73.357, "v0": 3.646, "v1": -26.809, "v2": 38.566, "v3": -37.482, "v4": 21.324, "amplitude": 39.651, "phase_angle": 13.434, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.892, "filter_rmsd": 0.103, "frame": { "rmsd": 0.005, "origin": [ 173.851, 232.130, 246.773 ], "x_axis": [ -0.933, 0.331, 0.140 ], "y_axis": [ 0.293, 0.926, -0.238 ], "z_axis": [ -0.208, -0.181, -0.961 ], "quaternion": [ -0.089, 0.160, 0.977, -0.107 ] } }, { "index": 140, "index_chain": 140, "chain_name": "A", "nt_resnum": 142, "nt_name": "G", "nt_code": "G", "nt_id": "///A/142", "linked_nts": [ "///A/141", "///A/143" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -58.212, "beta": 155.496, "gamma": 61.989, "delta": 80.254, "epsilon": -127.775, "zeta": -67.310, "epsilon_zeta": -60.466, "bb_type": "BI", "chi": 176.919, "glyco_bond": "anti", "C5prime_xyz": [ -1.177, 8.190, 1.806 ], "P_xyz": [ 1.426, 8.319, 1.582 ], "form": ".", "ssZp": 4.868, "Dp": 4.835, "splay_angle": 36.301, "splay_distance": 5.450, "splay_ratio": 0.317, "d22": null, "d64": null, "eta": 165.594, "theta": -121.462, "eta_prime": -167.498, "theta_prime": -119.906, "eta_base": -95.499, "theta_base": -88.797, "v0": 8.521, "v1": -30.519, "v2": 39.844, "v3": -35.944, "v4": 17.289, "amplitude": 40.110, "phase_angle": 6.602, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.568, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 169.472, 234.357, 243.082 ], "x_axis": [ -0.154, 0.983, -0.097 ], "y_axis": [ 0.981, 0.141, -0.134 ], "z_axis": [ -0.118, -0.116, -0.986 ], "quaternion": [ -0.007, 0.650, 0.755, -0.083 ] } }, { "index": 141, "index_chain": 141, "chain_name": "A", "nt_resnum": 143, "nt_name": "G", "nt_code": "G", "nt_id": "///A/143", "linked_nts": [ "///A/142", "///A/144" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -57.804, "beta": 173.140, "gamma": 57.709, "delta": 79.676, "epsilon": -145.549, "zeta": -71.540, "epsilon_zeta": -74.009, "bb_type": "BI", "chi": 179.119, "glyco_bond": "anti", "C5prime_xyz": [ -1.539, 8.430, 1.694 ], "P_xyz": [ 0.974, 8.767, 2.309 ], "form": "A", "ssZp": 4.694, "Dp": 4.684, "splay_angle": 25.346, "splay_distance": 4.043, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 171.688, "theta": -142.466, "eta_prime": -165.933, "theta_prime": -140.729, "eta_base": -106.726, "theta_base": -117.553, "v0": 2.485, "v1": -25.444, "v2": 37.505, "v3": -37.058, "v4": 21.807, "amplitude": 38.829, "phase_angle": 15.003, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.730, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 167.737, 237.282, 238.823 ], "x_axis": [ 0.662, 0.747, -0.058 ], "y_axis": [ 0.746, -0.650, 0.145 ], "z_axis": [ 0.070, -0.139, -0.988 ], "quaternion": [ 0.078, 0.908, 0.411, 0.003 ] } }, { "index": 142, "index_chain": 142, "chain_name": "A", "nt_resnum": 144, "nt_name": "A", "nt_code": "A", "nt_id": "///A/144", "linked_nts": [ "///A/143", "///A/145" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -58.543, "beta": 177.277, "gamma": 50.441, "delta": 79.394, "epsilon": 178.613, "zeta": -89.050, "epsilon_zeta": -92.338, "bb_type": "BI", "chi": -171.752, "glyco_bond": "anti", "C5prime_xyz": [ -1.655, 8.626, 1.182 ], "P_xyz": [ 0.773, 9.195, 1.954 ], "form": "A", "ssZp": 4.318, "Dp": 4.329, "splay_angle": 27.502, "splay_distance": 4.185, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 169.982, "theta": -154.211, "eta_prime": -173.057, "theta_prime": -153.432, "eta_base": -131.554, "theta_base": -130.289, "v0": -0.541, "v1": -22.465, "v2": 35.641, "v3": -36.991, "v4": 23.649, "amplitude": 37.796, "phase_angle": 19.440, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.944, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 166.813, 238.978, 235.272 ], "x_axis": [ 0.957, 0.282, 0.071 ], "y_axis": [ 0.263, -0.944, 0.199 ], "z_axis": [ 0.123, -0.172, -0.977 ], "quaternion": [ 0.094, 0.985, 0.138, 0.049 ] } }, { "index": 143, "index_chain": 143, "chain_name": "A", "nt_resnum": 145, "nt_name": "G", "nt_code": "G", "nt_id": "///A/145", "linked_nts": [ "///A/144", "///A/146" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -170.573, "beta": -137.168, "gamma": 139.932, "delta": 82.372, "epsilon": -131.251, "zeta": -81.163, "epsilon_zeta": -50.088, "bb_type": "BI", "chi": 171.934, "glyco_bond": "anti", "C5prime_xyz": [ -1.695, 8.310, 2.074 ], "P_xyz": [ 0.860, 8.788, 1.845 ], "form": "A", "ssZp": 4.469, "Dp": 4.569, "splay_angle": 23.589, "splay_distance": 3.797, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 172.595, "theta": -138.332, "eta_prime": -177.479, "theta_prime": -142.211, "eta_base": -144.250, "theta_base": -124.259, "v0": -0.708, "v1": -20.635, "v2": 32.956, "v3": -34.323, "v4": 22.090, "amplitude": 35.023, "phase_angle": 19.784, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 166.383, 240.344, 231.339 ], "x_axis": [ 0.950, -0.213, 0.228 ], "y_axis": [ -0.268, -0.931, 0.247 ], "z_axis": [ 0.160, -0.296, -0.942 ], "quaternion": [ 0.139, 0.978, -0.123, 0.099 ] } }, { "index": 144, "index_chain": 144, "chain_name": "A", "nt_resnum": 146, "nt_name": "U", "nt_code": "U", "nt_id": "///A/146", "linked_nts": [ "///A/145", "///A/147" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -47.326, "beta": 179.535, "gamma": 29.349, "delta": 82.532, "epsilon": -166.281, "zeta": -78.390, "epsilon_zeta": -87.891, "bb_type": "BI", "chi": -157.597, "glyco_bond": "anti", "C5prime_xyz": [ -1.259, 8.717, 0.416 ], "P_xyz": [ 1.083, 9.320, 1.409 ], "form": "A", "ssZp": 4.264, "Dp": 4.434, "splay_angle": 20.022, "splay_distance": 3.456, "splay_ratio": 0.182, "d22": null, "d64": null, "eta": 163.943, "theta": -132.558, "eta_prime": 177.228, "theta_prime": -137.573, "eta_base": -146.782, "theta_base": -111.413, "v0": 1.231, "v1": -22.419, "v2": 33.933, "v3": -34.206, "v4": 20.838, "amplitude": 35.433, "phase_angle": 16.731, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.160, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 167.616, 241.341, 227.890 ], "x_axis": [ 0.605, -0.692, 0.394 ], "y_axis": [ -0.770, -0.634, 0.070 ], "z_axis": [ 0.202, -0.346, -0.916 ], "quaternion": [ 0.117, 0.888, -0.412, 0.168 ] } }, { "index": 145, "index_chain": 145, "chain_name": "A", "nt_resnum": 147, "nt_name": "G", "nt_code": "G", "nt_id": "///A/147", "linked_nts": [ "///A/146", "///A/148" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 149.162, "beta": -149.107, "gamma": 174.028, "delta": 82.736, "epsilon": -119.270, "zeta": -91.764, "epsilon_zeta": -27.505, "bb_type": "--", "chi": 179.209, "glyco_bond": "anti", "C5prime_xyz": [ -1.517, 8.415, 1.717 ], "P_xyz": [ 0.313, 9.984, 0.694 ], "form": "A", "ssZp": 4.649, "Dp": 4.679, "splay_angle": 23.949, "splay_distance": 3.793, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 165.926, "theta": -158.702, "eta_prime": -178.467, "theta_prime": -154.824, "eta_base": -135.168, "theta_base": -119.937, "v0": 1.423, "v1": -22.801, "v2": 34.332, "v3": -34.498, "v4": 20.874, "amplitude": 35.793, "phase_angle": 16.425, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.815, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 170.181, 240.593, 225.698 ], "x_axis": [ 0.150, -0.890, 0.430 ], "y_axis": [ -0.946, -0.256, -0.200 ], "z_axis": [ 0.288, -0.377, -0.880 ], "quaternion": [ 0.059, 0.756, -0.607, 0.237 ] } }, { "index": 146, "index_chain": 146, "chain_name": "A", "nt_resnum": 148, "nt_name": "G", "nt_code": "G", "nt_id": "///A/148", "linked_nts": [ "///A/147", "///A/149" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -47.994, "beta": 154.530, "gamma": 45.101, "delta": 81.294, "epsilon": -150.385, "zeta": -71.122, "epsilon_zeta": -79.263, "bb_type": "BI", "chi": -173.513, "glyco_bond": "anti", "C5prime_xyz": [ -1.722, 8.691, 1.275 ], "P_xyz": [ 0.770, 9.060, 1.958 ], "form": "A", "ssZp": 4.447, "Dp": 4.489, "splay_angle": 20.916, "splay_distance": 3.419, "splay_ratio": 0.186, "d22": null, "d64": null, "eta": 161.060, "theta": -142.167, "eta_prime": 178.170, "theta_prime": -142.876, "eta_base": -132.958, "theta_base": -118.900, "v0": -2.729, "v1": -19.515, "v2": 32.982, "v3": -35.508, "v4": 24.150, "amplitude": 35.803, "phase_angle": 22.897, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.321, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 172.469, 238.489, 223.524 ], "x_axis": [ -0.538, -0.713, 0.449 ], "y_axis": [ -0.836, 0.384, -0.391 ], "z_axis": [ 0.106, -0.586, -0.803 ], "quaternion": [ -0.104, -0.469, 0.825, -0.296 ] } }, { "index": 147, "index_chain": 147, "chain_name": "A", "nt_resnum": 149, "nt_name": "U", "nt_code": "U", "nt_id": "///A/149", "linked_nts": [ "///A/148", "///A/150" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -65.883, "beta": 175.425, "gamma": 51.599, "delta": 81.283, "epsilon": -109.837, "zeta": -145.295, "epsilon_zeta": 35.458, "bb_type": "--", "chi": -160.566, "glyco_bond": "anti", "C5prime_xyz": [ -1.620, 8.794, 0.527 ], "P_xyz": [ 0.866, 9.487, 0.951 ], "form": ".", "ssZp": 4.098, "Dp": 4.609, "splay_angle": 125.474, "splay_distance": 16.306, "splay_ratio": 0.889, "d22": null, "d64": null, "eta": 176.520, "theta": -154.634, "eta_prime": -173.929, "theta_prime": -138.204, "eta_base": -139.552, "theta_base": -111.341, "v0": -1.806, "v1": -20.556, "v2": 33.749, "v3": -35.766, "v4": 23.707, "amplitude": 36.250, "phase_angle": 21.409, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.990, "filter_rmsd": 0.098, "frame": { "rmsd": 0.009, "origin": [ 173.991, 235.762, 222.132 ], "x_axis": [ -0.907, -0.390, 0.158 ], "y_axis": [ -0.398, 0.673, -0.624 ], "z_axis": [ 0.137, -0.629, -0.765 ], "quaternion": [ -0.006, -0.215, 0.914, -0.342 ] } }, { "index": 148, "index_chain": 148, "chain_name": "A", "nt_resnum": 150, "nt_name": "A", "nt_code": "A", "nt_id": "///A/150", "linked_nts": [ "///A/149", "///A/151" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,cap-acceptor,splayed-apart", "alpha": 36.951, "beta": 140.449, "gamma": 62.668, "delta": 81.986, "epsilon": -138.442, "zeta": -72.440, "epsilon_zeta": -66.002, "bb_type": "BI", "chi": 177.025, "glyco_bond": "anti", "C5prime_xyz": [ -1.641, 8.349, 1.810 ], "P_xyz": [ 0.962, 8.559, 1.778 ], "form": "A", "ssZp": 4.616, "Dp": 4.639, "splay_angle": 26.054, "splay_distance": 4.005, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": -100.813, "theta": -131.268, "eta_prime": -102.128, "theta_prime": -133.747, "eta_base": -108.813, "theta_base": -99.719, "v0": 0.857, "v1": -22.874, "v2": 34.899, "v3": -35.384, "v4": 21.793, "amplitude": 36.552, "phase_angle": 17.296, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3d", "suiteness": 0.150, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 173.238, 235.447, 205.846 ], "x_axis": [ -0.925, 0.381, -0.005 ], "y_axis": [ 0.110, 0.280, 0.954 ], "z_axis": [ 0.364, 0.881, -0.300 ], "quaternion": [ 0.117, 0.155, 0.791, 0.580 ] } }, { "index": 149, "index_chain": 149, "chain_name": "A", "nt_resnum": 151, "nt_name": "U", "nt_code": "U", "nt_id": "///A/151", "linked_nts": [ "///A/150", "///A/152" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -62.644, "beta": 175.013, "gamma": 49.287, "delta": 83.220, "epsilon": -151.432, "zeta": -69.387, "epsilon_zeta": -82.045, "bb_type": "BI", "chi": -167.278, "glyco_bond": "anti", "C5prime_xyz": [ -1.384, 8.587, 0.981 ], "P_xyz": [ 1.138, 8.859, 1.607 ], "form": "A", "ssZp": 4.505, "Dp": 4.589, "splay_angle": 22.839, "splay_distance": 3.659, "splay_ratio": 0.201, "d22": 4.349, "d64": 4.558, "eta": 165.194, "theta": -142.136, "eta_prime": -176.945, "theta_prime": -141.647, "eta_base": -120.393, "theta_base": -115.950, "v0": 3.350, "v1": -24.540, "v2": 35.237, "v3": -34.297, "v4": 19.516, "amplitude": 36.230, "phase_angle": 13.443, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.919, "filter_rmsd": 0.102, "frame": { "rmsd": 0.007, "origin": [ 172.874, 238.848, 203.765 ], "x_axis": [ -0.584, 0.439, 0.683 ], "y_axis": [ 0.716, -0.118, 0.688 ], "z_axis": [ 0.383, 0.891, -0.245 ], "quaternion": [ -0.115, 0.441, 0.654, 0.604 ] } }, { "index": 150, "index_chain": 150, "chain_name": "A", "nt_resnum": 152, "nt_name": "C", "nt_code": "C", "nt_id": "///A/152", "linked_nts": [ "///A/151", "///A/153" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,bulge,junction-loop", "alpha": -65.654, "beta": 171.663, "gamma": 57.137, "delta": 79.048, "epsilon": -150.742, "zeta": -70.111, "epsilon_zeta": -80.631, "bb_type": "BI", "chi": -164.930, "glyco_bond": "anti", "C5prime_xyz": [ -1.431, 8.783, 0.799 ], "P_xyz": [ 1.122, 9.302, 1.029 ], "form": "A", "ssZp": 4.495, "Dp": 4.600, "splay_angle": 24.213, "splay_distance": 3.753, "splay_ratio": 0.210, "d22": 3.808, "d64": 3.828, "eta": 168.047, "theta": -144.790, "eta_prime": -176.975, "theta_prime": -142.528, "eta_base": -134.555, "theta_base": -101.046, "v0": 0.216, "v1": -23.509, "v2": 36.580, "v3": -37.397, "v4": 23.417, "amplitude": 38.514, "phase_angle": 18.234, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.962, "filter_rmsd": 0.061, "frame": { "rmsd": 0.005, "origin": [ 172.421, 242.229, 202.441 ], "x_axis": [ -0.096, 0.296, 0.950 ], "y_axis": [ 0.932, -0.309, 0.190 ], "z_axis": [ 0.350, 0.904, -0.246 ], "quaternion": [ -0.295, 0.604, 0.508, 0.538 ] } }, { "index": 151, "index_chain": 151, "chain_name": "A", "nt_resnum": 153, "nt_name": "C", "nt_code": "C", "nt_id": "///A/153", "linked_nts": [ "///A/152", "///A/154" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,bulge", "alpha": -60.886, "beta": 165.955, "gamma": 58.649, "delta": 83.646, "epsilon": -148.507, "zeta": -70.315, "epsilon_zeta": -78.192, "bb_type": "BI", "chi": -167.667, "glyco_bond": "anti", "C5prime_xyz": [ -1.248, 8.674, 0.987 ], "P_xyz": [ 1.350, 8.853, 1.263 ], "form": "A", "ssZp": 4.446, "Dp": 4.546, "splay_angle": 23.687, "splay_distance": 3.826, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 171.371, "theta": -138.836, "eta_prime": -170.272, "theta_prime": -141.513, "eta_base": -112.156, "theta_base": -121.660, "v0": 1.282, "v1": -22.217, "v2": 33.562, "v3": -33.717, "v4": 20.509, "amplitude": 35.015, "phase_angle": 16.566, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.914, "filter_rmsd": 0.064, "frame": { "rmsd": 0.007, "origin": [ 172.853, 245.858, 203.295 ], "x_axis": [ 0.530, -0.045, 0.847 ], "y_axis": [ 0.760, -0.418, -0.498 ], "z_axis": [ 0.376, 0.908, -0.187 ], "quaternion": [ -0.481, 0.731, 0.245, 0.418 ] } }, { "index": 152, "index_chain": 152, "chain_name": "A", "nt_resnum": 154, "nt_name": "A", "nt_code": "A", "nt_id": "///A/154", "linked_nts": [ "///A/153", "///A/155" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -59.867, "beta": 179.933, "gamma": 36.643, "delta": 78.902, "epsilon": -147.040, "zeta": -78.623, "epsilon_zeta": -68.417, "bb_type": "BI", "chi": -170.340, "glyco_bond": "anti", "C5prime_xyz": [ -1.539, 8.646, 1.118 ], "P_xyz": [ 0.744, 9.194, 2.274 ], "form": "A", "ssZp": 4.561, "Dp": 4.620, "splay_angle": 22.546, "splay_distance": 3.601, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 161.594, "theta": -151.931, "eta_prime": 172.948, "theta_prime": -146.475, "eta_base": -149.909, "theta_base": -117.818, "v0": -0.110, "v1": -23.058, "v2": 36.239, "v3": -37.305, "v4": 23.592, "amplitude": 38.280, "phase_angle": 18.791, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.521, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 173.136, 249.635, 203.835 ], "x_axis": [ 0.679, -0.528, 0.509 ], "y_axis": [ 0.317, -0.414, -0.853 ], "z_axis": [ 0.662, 0.741, -0.114 ], "quaternion": [ 0.536, -0.743, 0.071, -0.394 ] } }, { "index": 153, "index_chain": 153, "chain_name": "A", "nt_resnum": 155, "nt_name": "U", "nt_code": "U", "nt_id": "///A/155", "linked_nts": [ "///A/154", "///A/156" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -47.864, "beta": 166.739, "gamma": 45.439, "delta": 79.298, "epsilon": -167.084, "zeta": -85.619, "epsilon_zeta": -81.465, "bb_type": "BI", "chi": -163.850, "glyco_bond": "anti", "C5prime_xyz": [ -1.500, 8.746, 0.744 ], "P_xyz": [ 1.025, 9.257, 1.206 ], "form": "A", "ssZp": 4.400, "Dp": 4.456, "splay_angle": 22.473, "splay_distance": 3.637, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 169.631, "theta": -138.098, "eta_prime": -175.605, "theta_prime": -145.811, "eta_base": -135.398, "theta_base": -121.233, "v0": -0.683, "v1": -22.068, "v2": 35.228, "v3": -36.615, "v4": 23.504, "amplitude": 37.409, "phase_angle": 19.660, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.675, "filter_rmsd": 0.100, "frame": { "rmsd": 0.007, "origin": [ 175.074, 252.275, 205.332 ], "x_axis": [ 0.722, -0.692, -0.013 ], "y_axis": [ -0.064, -0.049, -0.997 ], "z_axis": [ 0.689, 0.720, -0.080 ], "quaternion": [ 0.631, -0.680, 0.278, -0.249 ] } }, { "index": 154, "index_chain": 154, "chain_name": "A", "nt_resnum": 156, "nt_name": "A", "nt_code": "A", "nt_id": "///A/156", "linked_nts": [ "///A/155", "///A/157" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": 161.774, "beta": -149.357, "gamma": 159.066, "delta": 78.612, "epsilon": -124.663, "zeta": -115.068, "epsilon_zeta": -9.595, "bb_type": "--", "chi": 173.699, "glyco_bond": "anti", "C5prime_xyz": [ -1.341, 8.128, 2.020 ], "P_xyz": [ 0.761, 9.412, 1.154 ], "form": "A", "ssZp": 4.819, "Dp": 4.806, "splay_angle": 25.857, "splay_distance": 3.843, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 156.333, "theta": -158.885, "eta_prime": 171.086, "theta_prime": -154.797, "eta_base": -143.533, "theta_base": -126.833, "v0": 6.624, "v1": -29.205, "v2": 39.687, "v3": -36.900, "v4": 19.028, "amplitude": 40.220, "phase_angle": 9.344, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.314, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 177.883, 254.070, 206.786 ], "x_axis": [ 0.549, -0.656, -0.518 ], "y_axis": [ -0.413, 0.327, -0.850 ], "z_axis": [ 0.727, 0.681, -0.091 ], "quaternion": [ 0.668, -0.573, 0.466, -0.091 ] } }, { "index": 155, "index_chain": 155, "chain_name": "A", "nt_resnum": 157, "nt_name": "U", "nt_code": "U", "nt_id": "///A/157", "linked_nts": [ "///A/156", "///A/158" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 0.200, "beta": 135.139, "gamma": 21.651, "delta": 78.522, "epsilon": -151.199, "zeta": -119.371, "epsilon_zeta": -31.829, "bb_type": "BI", "chi": -167.223, "glyco_bond": "anti", "C5prime_xyz": [ -1.475, 8.635, 0.947 ], "P_xyz": [ 1.066, 8.596, 1.528 ], "form": "A", "ssZp": 4.603, "Dp": 4.664, "splay_angle": 19.535, "splay_distance": 3.080, "splay_ratio": 0.173, "d22": 4.246, "d64": 4.363, "eta": 173.425, "theta": -141.111, "eta_prime": -175.181, "theta_prime": -144.177, "eta_base": -136.490, "theta_base": -125.615, "v0": 2.637, "v1": -25.788, "v2": 37.906, "v3": -37.458, "v4": 21.941, "amplitude": 39.219, "phase_angle": 14.869, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.100, "frame": { "rmsd": 0.006, "origin": [ 181.522, 255.040, 207.555 ], "x_axis": [ 0.169, -0.381, -0.909 ], "y_axis": [ -0.644, 0.655, -0.395 ], "z_axis": [ 0.746, 0.652, -0.135 ], "quaternion": [ 0.650, -0.403, 0.637, 0.101 ] } }, { "index": 156, "index_chain": 156, "chain_name": "A", "nt_resnum": 158, "nt_name": "C", "nt_code": "C", "nt_id": "///A/158", "linked_nts": [ "///A/157", "///A/159" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": 142.123, "beta": -114.811, "gamma": 171.115, "delta": 83.833, "epsilon": -106.187, "zeta": -94.781, "epsilon_zeta": -11.406, "bb_type": "--", "chi": 177.191, "glyco_bond": "anti", "C5prime_xyz": [ -1.392, 8.387, 1.829 ], "P_xyz": [ 0.680, 9.170, 0.437 ], "form": ".", "ssZp": 4.564, "Dp": 4.625, "splay_angle": 24.790, "splay_distance": 4.503, "splay_ratio": 0.227, "d22": 4.321, "d64": 5.176, "eta": 174.442, "theta": -118.972, "eta_prime": -175.609, "theta_prime": -137.398, "eta_base": -143.110, "theta_base": -124.254, "v0": 1.407, "v1": -22.338, "v2": 33.567, "v3": -33.696, "v4": 20.374, "amplitude": 34.984, "phase_angle": 16.359, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.008, "origin": [ 184.578, 255.398, 207.421 ], "x_axis": [ -0.188, -0.076, -0.979 ], "y_axis": [ -0.504, 0.863, 0.030 ], "z_axis": [ 0.843, 0.499, -0.201 ], "quaternion": [ 0.607, -0.193, 0.750, 0.176 ] } }, { "index": 157, "index_chain": 157, "chain_name": "A", "nt_resnum": 159, "nt_name": "U", "nt_code": "U", "nt_id": "///A/159", "linked_nts": [ "///A/158", "///A/160" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": 85.728, "beta": -139.831, "gamma": -134.745, "delta": 82.164, "epsilon": -101.518, "zeta": -98.952, "epsilon_zeta": -2.567, "bb_type": "--", "chi": 177.110, "glyco_bond": "anti", "C5prime_xyz": [ -1.180, 8.138, 1.848 ], "P_xyz": [ -0.402, 10.574, 1.302 ], "form": ".", "ssZp": 4.818, "Dp": 4.858, "splay_angle": 35.279, "splay_distance": 5.221, "splay_ratio": 0.303, "d22": null, "d64": null, "eta": 154.575, "theta": -165.875, "eta_prime": 168.030, "theta_prime": -146.030, "eta_base": -153.679, "theta_base": -85.434, "v0": 8.755, "v1": -30.229, "v2": 39.021, "v3": -34.969, "v4": 16.554, "amplitude": 39.233, "phase_angle": 5.961, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.107, "frame": { "rmsd": 0.005, "origin": [ 188.528, 255.076, 205.282 ], "x_axis": [ -0.510, 0.248, -0.824 ], "y_axis": [ -0.393, 0.785, 0.480 ], "z_axis": [ 0.765, 0.568, -0.303 ], "quaternion": [ 0.493, -0.045, 0.806, 0.325 ] } }, { "index": 158, "index_chain": 158, "chain_name": "A", "nt_resnum": 160, "nt_name": "G", "nt_code": "G", "nt_id": "///A/160", "linked_nts": [ "///A/159", "///A/161" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,hairpin-loop,cap-acceptor", "alpha": -30.666, "beta": 121.460, "gamma": 63.304, "delta": 87.673, "epsilon": -119.978, "zeta": 175.401, "epsilon_zeta": 64.621, "bb_type": "BII", "chi": 179.012, "glyco_bond": "anti", "C5prime_xyz": [ -1.904, 8.525, 1.642 ], "P_xyz": [ 0.714, 8.474, 1.472 ], "form": ".", "ssZp": 4.338, "Dp": 4.389, "splay_angle": 77.325, "splay_distance": 11.559, "splay_ratio": 0.625, "d22": null, "d64": null, "eta": 171.737, "theta": 141.330, "eta_prime": -156.669, "theta_prime": 143.865, "eta_base": -84.601, "theta_base": 149.415, "v0": -4.893, "v1": -15.471, "v2": 28.557, "v3": -32.140, "v4": 23.429, "amplitude": 32.081, "phase_angle": 27.108, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.389, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 188.597, 258.898, 201.725 ], "x_axis": [ -0.669, 0.743, -0.014 ], "y_axis": [ 0.227, 0.223, 0.948 ], "z_axis": [ 0.707, 0.631, -0.318 ], "quaternion": [ 0.243, 0.326, 0.743, 0.531 ] } }, { "index": 159, "index_chain": 159, "chain_name": "A", "nt_resnum": 161, "nt_name": "A", "nt_code": "A", "nt_id": "///A/161", "linked_nts": [ "///A/160", "///A/162" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,A-minor,phosphate", "alpha": -47.473, "beta": 143.702, "gamma": 43.560, "delta": 84.270, "epsilon": -152.841, "zeta": -100.464, "epsilon_zeta": -52.377, "bb_type": "BI", "chi": -159.524, "glyco_bond": "anti", "C5prime_xyz": [ -1.678, 8.838, 0.473 ], "P_xyz": [ 0.889, 9.172, 0.852 ], "form": ".", "ssZp": 4.060, "Dp": 4.253, "splay_angle": 18.763, "splay_distance": 3.059, "splay_ratio": 0.163, "d22": null, "d64": null, "eta": -164.792, "theta": -127.097, "eta_prime": -172.041, "theta_prime": -137.671, "eta_base": 169.257, "theta_base": -100.793, "v0": -5.985, "v1": -14.424, "v2": 28.044, "v3": -32.351, "v4": 24.220, "amplitude": 32.110, "phase_angle": 29.147, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.387, "filter_rmsd": 0.040, "frame": { "rmsd": 0.011, "origin": [ 197.783, 251.917, 202.436 ], "x_axis": [ -0.623, 0.374, -0.687 ], "y_axis": [ -0.183, 0.784, 0.593 ], "z_axis": [ 0.760, 0.496, -0.420 ], "quaternion": [ 0.430, 0.057, 0.841, 0.324 ] } }, { "index": 160, "index_chain": 160, "chain_name": "A", "nt_resnum": 162, "nt_name": "A", "nt_code": "A", "nt_id": "///A/162", "linked_nts": [ "///A/161", "///A/163" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,phosphate", "alpha": 144.156, "beta": -133.537, "gamma": 164.715, "delta": 81.858, "epsilon": -105.762, "zeta": 11.223, "epsilon_zeta": 243.015, "bb_type": "--", "chi": -164.795, "glyco_bond": "anti", "C5prime_xyz": [ -1.284, 8.609, 0.814 ], "P_xyz": [ 0.464, 9.347, -0.987 ], "form": ".", "ssZp": 4.320, "Dp": 4.763, "splay_angle": 26.211, "splay_distance": 4.204, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 157.924, "theta": -30.799, "eta_prime": 174.812, "theta_prime": -66.704, "eta_base": -129.760, "theta_base": -106.796, "v0": 3.781, "v1": -25.606, "v2": 36.509, "v3": -35.351, "v4": 19.943, "amplitude": 37.466, "phase_angle": 12.984, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.182, "filter_rmsd": 0.038, "frame": { "rmsd": 0.008, "origin": [ 199.264, 253.451, 200.243 ], "x_axis": [ -0.522, 0.808, -0.274 ], "y_axis": [ 0.391, 0.512, 0.764 ], "z_axis": [ 0.758, 0.291, -0.583 ], "quaternion": [ 0.319, 0.371, 0.809, 0.326 ] } }, { "index": 161, "index_chain": 161, "chain_name": "A", "nt_resnum": 163, "nt_name": "U", "nt_code": "U", "nt_id": "///A/163", "linked_nts": [ "///A/162", "///A/164" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,hairpin-loop", "alpha": 171.533, "beta": 170.288, "gamma": 51.183, "delta": 145.050, "epsilon": -105.298, "zeta": 152.298, "epsilon_zeta": 102.404, "bb_type": "BII", "chi": -117.316, "glyco_bond": "anti", "C5prime_xyz": [ -1.924, 8.453, -1.379 ], "P_xyz": [ 0.549, 9.222, -1.028 ], "form": ".", "ssZp": 1.105, "Dp": 1.186, "splay_angle": 46.676, "splay_distance": 7.636, "splay_ratio": 0.402, "d22": 7.586, "d64": 7.267, "eta": 52.258, "theta": 172.546, "eta_prime": 107.566, "theta_prime": 148.827, "eta_base": 110.195, "theta_base": 126.789, "v0": -21.414, "v1": 34.811, "v2": -34.153, "v3": 22.619, "v4": -0.952, "amplitude": 35.763, "phase_angle": 162.742, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 200.339, 256.659, 197.748 ], "x_axis": [ 0.212, -0.970, -0.119 ], "y_axis": [ 0.611, 0.037, 0.791 ], "z_axis": [ -0.763, -0.240, 0.601 ], "quaternion": [ 0.680, 0.379, -0.237, -0.581 ] } }, { "index": 162, "index_chain": 162, "chain_name": "A", "nt_resnum": 164, "nt_name": "U", "nt_code": "U", "nt_id": "///A/164", "linked_nts": [ "///A/163", "///A/165" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-pair-contact,hairpin-loop", "alpha": 147.576, "beta": -143.437, "gamma": 61.092, "delta": 81.087, "epsilon": -159.835, "zeta": -84.485, "epsilon_zeta": -75.351, "bb_type": "BI", "chi": -168.762, "glyco_bond": "anti", "C5prime_xyz": [ -1.272, 8.546, 1.057 ], "P_xyz": [ 1.131, 8.480, 2.102 ], "form": ".", "ssZp": 4.588, "Dp": 4.608, "splay_angle": 27.347, "splay_distance": 4.130, "splay_ratio": 0.238, "d22": 4.894, "d64": 5.336, "eta": 98.393, "theta": -160.813, "eta_prime": 88.792, "theta_prime": -158.119, "eta_base": 91.680, "theta_base": -146.202, "v0": 5.181, "v1": -27.244, "v2": 37.830, "v3": -35.800, "v4": 19.300, "amplitude": 38.541, "phase_angle": 11.020, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.107, "frame": { "rmsd": 0.004, "origin": [ 201.844, 264.129, 197.251 ], "x_axis": [ 0.619, -0.771, -0.153 ], "y_axis": [ 0.283, 0.037, 0.958 ], "z_axis": [ -0.733, -0.636, 0.241 ], "quaternion": [ 0.689, 0.579, -0.210, -0.383 ] } }, { "index": 163, "index_chain": 163, "chain_name": "A", "nt_resnum": 165, "nt_name": "C", "nt_code": "C", "nt_id": "///A/165", "linked_nts": [ "///A/164", "///A/166" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": -50.947, "beta": 164.770, "gamma": 55.806, "delta": 82.050, "epsilon": 171.856, "zeta": 28.800, "epsilon_zeta": 143.056, "bb_type": "--", "chi": -171.934, "glyco_bond": "anti", "C5prime_xyz": [ -1.254, 8.571, 1.242 ], "P_xyz": [ 1.346, 8.683, 1.553 ], "form": ".", "ssZp": 4.229, "Dp": 4.281, "splay_angle": 48.110, "splay_distance": 7.470, "splay_ratio": 0.412, "d22": null, "d64": null, "eta": 175.237, "theta": -70.865, "eta_prime": -170.671, "theta_prime": -83.573, "eta_base": -146.902, "theta_base": -39.175, "v0": 3.846, "v1": -25.292, "v2": 35.960, "v3": -34.713, "v4": 19.475, "amplitude": 36.870, "phase_angle": 12.754, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.710, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 198.049, 263.026, 196.050 ], "x_axis": [ 0.643, -0.741, 0.194 ], "y_axis": [ 0.075, 0.313, 0.947 ], "z_axis": [ -0.762, -0.594, 0.256 ], "quaternion": [ 0.744, 0.518, -0.322, -0.274 ] } }, { "index": 164, "index_chain": 164, "chain_name": "A", "nt_resnum": 166, "nt_name": "A", "nt_code": "A", "nt_id": "///A/166", "linked_nts": [ "///A/165", "///A/167" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate", "alpha": -171.654, "beta": 159.749, "gamma": 109.947, "delta": 80.913, "epsilon": -113.467, "zeta": -114.838, "epsilon_zeta": 1.371, "bb_type": "--", "chi": -172.596, "glyco_bond": "anti", "C5prime_xyz": [ -1.493, 8.549, 1.254 ], "P_xyz": [ 0.653, 9.633, 0.221 ], "form": ".", "ssZp": 4.576, "Dp": 4.739, "splay_angle": 24.924, "splay_distance": 3.811, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 142.020, "theta": -164.901, "eta_prime": -173.658, "theta_prime": -159.140, "eta_base": -88.202, "theta_base": -123.560, "v0": 2.213, "v1": -24.439, "v2": 36.118, "v3": -35.864, "v4": 21.220, "amplitude": 37.447, "phase_angle": 15.310, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 199.292, 258.392, 201.776 ], "x_axis": [ 0.174, 0.204, 0.963 ], "y_axis": [ -0.681, 0.731, -0.032 ], "z_axis": [ -0.711, -0.651, 0.266 ], "quaternion": [ 0.737, 0.210, -0.568, 0.300 ] } }, { "index": 165, "index_chain": 165, "chain_name": "A", "nt_resnum": 167, "nt_name": "U", "nt_code": "U", "nt_id": "///A/167", "linked_nts": [ "///A/166", "///A/168" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,cap-donor,phosphate", "alpha": -43.306, "beta": 125.442, "gamma": 61.194, "delta": 83.246, "epsilon": -132.470, "zeta": -83.899, "epsilon_zeta": -48.571, "bb_type": "BI", "chi": -167.181, "glyco_bond": "anti", "C5prime_xyz": [ -1.407, 8.621, 0.948 ], "P_xyz": [ 1.096, 8.431, 0.214 ], "form": ".", "ssZp": 4.509, "Dp": 4.669, "splay_angle": 31.418, "splay_distance": 4.764, "splay_ratio": 0.272, "d22": null, "d64": null, "eta": 169.196, "theta": -131.966, "eta_prime": -174.106, "theta_prime": -136.964, "eta_base": -128.546, "theta_base": -102.786, "v0": 1.670, "v1": -23.063, "v2": 34.471, "v3": -34.480, "v4": 20.706, "amplitude": 35.863, "phase_angle": 16.016, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.546, "filter_rmsd": 0.104, "frame": { "rmsd": 0.007, "origin": [ 197.067, 255.895, 203.603 ], "x_axis": [ -0.251, 0.576, 0.778 ], "y_axis": [ -0.713, 0.434, -0.551 ], "z_axis": [ -0.655, -0.693, 0.301 ], "quaternion": [ 0.609, 0.058, -0.588, 0.529 ] } }, { "index": 166, "index_chain": 166, "chain_name": "A", "nt_resnum": 168, "nt_name": "A", "nt_code": "A", "nt_id": "///A/168", "linked_nts": [ "///A/167", "///A/169" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate", "alpha": -62.148, "beta": 160.204, "gamma": 58.050, "delta": 81.880, "epsilon": -129.501, "zeta": -59.163, "epsilon_zeta": -70.338, "bb_type": "BI", "chi": -165.984, "glyco_bond": "anti", "C5prime_xyz": [ -0.855, 8.440, 0.853 ], "P_xyz": [ 1.737, 8.324, 0.451 ], "form": ".", "ssZp": 4.582, "Dp": 4.820, "splay_angle": 35.072, "splay_distance": 5.266, "splay_ratio": 0.302, "d22": null, "d64": null, "eta": 167.778, "theta": -114.357, "eta_prime": -176.473, "theta_prime": -111.586, "eta_base": -120.721, "theta_base": -67.361, "v0": 8.649, "v1": -30.059, "v2": 38.969, "v3": -34.970, "v4": 16.616, "amplitude": 39.193, "phase_angle": 6.128, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.742, "filter_rmsd": 0.042, "frame": { "rmsd": 0.014, "origin": [ 193.521, 254.188, 206.288 ], "x_axis": [ -0.674, 0.733, 0.096 ], "y_axis": [ -0.272, -0.125, -0.954 ], "z_axis": [ -0.687, -0.669, 0.284 ], "quaternion": [ 0.348, -0.205, -0.562, 0.721 ] } }, { "index": 167, "index_chain": 167, "chain_name": "A", "nt_resnum": 169, "nt_name": "G", "nt_code": "G", "nt_id": "///A/169", "linked_nts": [ "///A/168", "///A/170" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": -64.919, "beta": 160.966, "gamma": 61.815, "delta": 81.225, "epsilon": -149.875, "zeta": -72.351, "epsilon_zeta": -77.524, "bb_type": "BI", "chi": -175.009, "glyco_bond": "anti", "C5prime_xyz": [ -1.273, 8.440, 1.361 ], "P_xyz": [ 1.331, 8.663, 1.208 ], "form": "A", "ssZp": 4.711, "Dp": 4.701, "splay_angle": 23.924, "splay_distance": 3.748, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 158.267, "theta": -142.580, "eta_prime": -169.210, "theta_prime": -144.218, "eta_base": -90.291, "theta_base": -124.254, "v0": 5.996, "v1": -27.954, "v2": 38.130, "v3": -35.676, "v4": 18.730, "amplitude": 38.705, "phase_angle": 9.888, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.673, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 188.442, 255.573, 206.204 ], "x_axis": [ -0.506, 0.343, -0.792 ], "y_axis": [ 0.346, -0.760, -0.550 ], "z_axis": [ -0.790, -0.552, 0.266 ], "quaternion": [ -0.001, -0.497, -0.346, 0.795 ] } }, { "index": 168, "index_chain": 168, "chain_name": "A", "nt_resnum": 170, "nt_name": "G", "nt_code": "G", "nt_id": "///A/170", "linked_nts": [ "///A/169", "///A/171" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": -59.120, "beta": 171.989, "gamma": 56.702, "delta": 81.069, "epsilon": -142.842, "zeta": -78.320, "epsilon_zeta": -64.522, "bb_type": "BI", "chi": -170.551, "glyco_bond": "anti", "C5prime_xyz": [ -1.439, 8.654, 1.154 ], "P_xyz": [ 1.111, 9.026, 1.595 ], "form": "A", "ssZp": 4.584, "Dp": 4.637, "splay_angle": 24.419, "splay_distance": 3.821, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 176.118, "theta": -144.522, "eta_prime": -170.589, "theta_prime": -143.234, "eta_base": -133.215, "theta_base": -115.202, "v0": 1.041, "v1": -23.355, "v2": 35.579, "v3": -35.975, "v4": 22.019, "amplitude": 37.216, "phase_angle": 17.057, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.956, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 184.925, 255.819, 207.477 ], "x_axis": [ -0.233, -0.107, -0.967 ], "y_axis": [ 0.549, -0.835, -0.039 ], "z_axis": [ -0.803, -0.540, 0.253 ], "quaternion": [ -0.215, -0.581, -0.190, 0.762 ] } }, { "index": 169, "index_chain": 169, "chain_name": "A", "nt_resnum": 171, "nt_name": "A", "nt_code": "A", "nt_id": "///A/171", "linked_nts": [ "///A/170", "///A/172" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -55.367, "beta": 170.219, "gamma": 44.347, "delta": 81.386, "epsilon": -145.589, "zeta": -81.925, "epsilon_zeta": -63.663, "bb_type": "BI", "chi": -174.419, "glyco_bond": "anti", "C5prime_xyz": [ -1.589, 8.513, 1.361 ], "P_xyz": [ 0.848, 8.867, 2.241 ], "form": "A", "ssZp": 4.587, "Dp": 4.613, "splay_angle": 23.477, "splay_distance": 3.729, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 166.615, "theta": -150.041, "eta_prime": 179.043, "theta_prime": -147.310, "eta_base": -137.920, "theta_base": -127.723, "v0": 1.003, "v1": -22.887, "v2": 34.843, "v3": -35.267, "v4": 21.618, "amplitude": 36.455, "phase_angle": 17.102, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.788, "filter_rmsd": 0.037, "frame": { "rmsd": 0.009, "origin": [ 181.194, 254.999, 207.552 ], "x_axis": [ 0.325, -0.396, -0.858 ], "y_axis": [ 0.652, -0.564, 0.507 ], "z_axis": [ -0.685, -0.725, 0.075 ], "quaternion": [ 0.457, 0.673, 0.095, -0.573 ] } }, { "index": 170, "index_chain": 170, "chain_name": "A", "nt_resnum": 172, "nt_name": "U", "nt_code": "U", "nt_id": "///A/172", "linked_nts": [ "///A/171", "///A/173" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -53.345, "beta": 168.161, "gamma": 48.820, "delta": 80.911, "epsilon": -154.582, "zeta": -74.995, "epsilon_zeta": -79.587, "bb_type": "BI", "chi": -165.995, "glyco_bond": "anti", "C5prime_xyz": [ -1.536, 8.708, 0.861 ], "P_xyz": [ 0.989, 9.212, 1.332 ], "form": "A", "ssZp": 4.474, "Dp": 4.544, "splay_angle": 24.023, "splay_distance": 3.800, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 170.741, "theta": -151.150, "eta_prime": -177.591, "theta_prime": -150.986, "eta_base": -146.142, "theta_base": -128.457, "v0": -0.376, "v1": -21.941, "v2": 34.662, "v3": -35.842, "v4": 22.841, "amplitude": 36.700, "phase_angle": 19.185, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.812, "filter_rmsd": 0.100, "frame": { "rmsd": 0.007, "origin": [ 177.711, 253.995, 206.680 ], "x_axis": [ 0.616, -0.605, -0.505 ], "y_axis": [ 0.395, -0.318, 0.862 ], "z_axis": [ -0.682, -0.730, 0.043 ], "quaternion": [ 0.579, 0.688, -0.076, -0.432 ] } }, { "index": 171, "index_chain": 171, "chain_name": "A", "nt_resnum": 173, "nt_name": "A", "nt_code": "A", "nt_id": "///A/173", "linked_nts": [ "///A/172", "///A/174" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -62.303, "beta": 164.413, "gamma": 60.112, "delta": 79.855, "epsilon": -149.284, "zeta": -78.145, "epsilon_zeta": -71.139, "bb_type": "BI", "chi": -171.928, "glyco_bond": "anti", "C5prime_xyz": [ -1.610, 8.621, 1.188 ], "P_xyz": [ 0.945, 9.153, 1.379 ], "form": "A", "ssZp": 4.591, "Dp": 4.609, "splay_angle": 25.418, "splay_distance": 3.976, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 170.784, "theta": -149.656, "eta_prime": -175.569, "theta_prime": -148.778, "eta_base": -137.898, "theta_base": -124.923, "v0": -0.105, "v1": -22.695, "v2": 35.618, "v3": -36.642, "v4": 23.193, "amplitude": 37.617, "phase_angle": 18.766, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.881, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 174.854, 251.945, 205.238 ], "x_axis": [ 0.713, -0.701, -0.035 ], "y_axis": [ 0.079, 0.031, 0.996 ], "z_axis": [ -0.697, -0.713, 0.077 ], "quaternion": [ 0.675, 0.633, -0.245, -0.289 ] } }, { "index": 172, "index_chain": 172, "chain_name": "A", "nt_resnum": 174, "nt_name": "U", "nt_code": "U", "nt_id": "///A/174", "linked_nts": [ "///A/173", "///A/175" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -56.562, "beta": 169.033, "gamma": 55.223, "delta": 82.774, "epsilon": -133.685, "zeta": -82.290, "epsilon_zeta": -51.395, "bb_type": "BI", "chi": -165.889, "glyco_bond": "anti", "C5prime_xyz": [ -1.471, 8.677, 0.864 ], "P_xyz": [ 1.092, 9.096, 1.193 ], "form": ".", "ssZp": 4.455, "Dp": 4.632, "splay_angle": 16.063, "splay_distance": 3.173, "splay_ratio": 0.161, "d22": null, "d64": null, "eta": 178.880, "theta": -111.691, "eta_prime": -170.179, "theta_prime": -127.675, "eta_base": -135.424, "theta_base": -106.694, "v0": 0.040, "v1": -21.440, "v2": 33.470, "v3": -34.397, "v4": 21.655, "amplitude": 35.304, "phase_angle": 18.552, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.906, "filter_rmsd": 0.098, "frame": { "rmsd": 0.009, "origin": [ 172.658, 249.012, 203.693 ], "x_axis": [ 0.640, -0.583, 0.501 ], "y_axis": [ -0.304, 0.408, 0.861 ], "z_axis": [ -0.706, -0.703, 0.084 ], "quaternion": [ 0.730, 0.536, -0.414, -0.096 ] } }, { "index": 173, "index_chain": 173, "chain_name": "A", "nt_resnum": 175, "nt_name": "G", "nt_code": "G", "nt_id": "///A/175", "linked_nts": [ "///A/174", "///A/176" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,bulge,splayed-apart", "alpha": 98.151, "beta": -164.064, "gamma": -143.443, "delta": 83.217, "epsilon": 25.378, "zeta": 170.251, "epsilon_zeta": -144.873, "bb_type": "--", "chi": -161.695, "glyco_bond": "anti", "C5prime_xyz": [ -0.750, 8.484, 0.647 ], "P_xyz": [ 0.242, 10.655, -0.412 ], "form": ".", "ssZp": 2.895, "Dp": 3.443, "splay_angle": 137.422, "splay_distance": 18.586, "splay_ratio": 0.932, "d22": null, "d64": null, "eta": -169.488, "theta": -117.327, "eta_prime": -168.153, "theta_prime": -150.126, "eta_base": -132.440, "theta_base": -155.549, "v0": 9.634, "v1": -29.834, "v2": 37.751, "v3": -33.217, "v4": 14.917, "amplitude": 37.856, "phase_angle": 4.266, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 172.948, 245.921, 203.037 ], "x_axis": [ 0.544, -0.080, 0.835 ], "y_axis": [ -0.745, 0.412, 0.525 ], "z_axis": [ -0.386, -0.907, 0.165 ], "quaternion": [ 0.728, 0.492, -0.419, 0.228 ] } }, { "index": 174, "index_chain": 174, "chain_name": "A", "nt_resnum": 176, "nt_name": "A", "nt_code": "A", "nt_id": "///A/176", "linked_nts": [ "///A/175", "///A/177" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-pair-contact,bulge,phosphate,splayed-apart", "alpha": 40.773, "beta": -130.644, "gamma": 13.041, "delta": 84.360, "epsilon": -172.293, "zeta": -97.383, "epsilon_zeta": -74.909, "bb_type": "BI", "chi": -99.081, "glyco_bond": "anti", "C5prime_xyz": [ -2.086, 7.650, -2.692 ], "P_xyz": [ -0.349, 9.556, -3.101 ], "form": ".", "ssZp": 1.474, "Dp": 4.355, "splay_angle": 151.831, "splay_distance": 18.268, "splay_ratio": 0.970, "d22": null, "d64": null, "eta": -77.104, "theta": 164.187, "eta_prime": -26.784, "theta_prime": 142.163, "eta_base": -25.157, "theta_base": 91.530, "v0": 2.061, "v1": -22.393, "v2": 33.019, "v3": -32.813, "v4": 19.405, "amplitude": 34.229, "phase_angle": 15.280, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.005, "origin": [ 154.819, 241.959, 204.074 ], "x_axis": [ -0.474, 0.783, -0.404 ], "y_axis": [ 0.880, 0.430, -0.201 ], "z_axis": [ 0.016, -0.451, -0.893 ], "quaternion": [ 0.126, 0.497, 0.836, -0.195 ] } }, { "index": 175, "index_chain": 175, "chain_name": "A", "nt_resnum": 177, "nt_name": "G", "nt_code": "G", "nt_id": "///A/177", "linked_nts": [ "///A/176", "///A/178" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,bulge,junction-loop,phosphate,splayed-apart", "alpha": 159.891, "beta": 106.090, "gamma": 72.670, "delta": 83.648, "epsilon": -130.519, "zeta": -115.969, "epsilon_zeta": -14.550, "bb_type": "--", "chi": -170.866, "glyco_bond": "anti", "C5prime_xyz": [ -2.181, 8.809, 1.004 ], "P_xyz": [ 0.323, 8.906, 0.292 ], "form": ".", "ssZp": 4.089, "Dp": 4.238, "splay_angle": 16.283, "splay_distance": 2.791, "splay_ratio": 0.159, "d22": null, "d64": null, "eta": 7.683, "theta": -147.290, "eta_prime": 28.455, "theta_prime": -150.732, "eta_base": 74.167, "theta_base": -104.803, "v0": -9.484, "v1": -12.264, "v2": 27.888, "v3": -34.214, "v4": 27.510, "amplitude": 33.831, "phase_angle": 34.479, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.010, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 172.945, 242.990, 202.052 ], "x_axis": [ -0.053, 0.338, 0.940 ], "y_axis": [ -0.982, 0.152, -0.110 ], "z_axis": [ -0.179, -0.929, 0.324 ], "quaternion": [ 0.597, 0.343, -0.469, 0.553 ] } }, { "index": 176, "index_chain": 176, "chain_name": "A", "nt_resnum": 178, "nt_name": "A", "nt_code": "A", "nt_id": "///A/178", "linked_nts": [ "///A/177", "///A/179" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop", "alpha": -17.838, "beta": 146.796, "gamma": 23.701, "delta": 95.041, "epsilon": -149.300, "zeta": -77.662, "epsilon_zeta": -71.638, "bb_type": "BI", "chi": -116.297, "glyco_bond": "anti", "C5prime_xyz": [ -1.150, 8.016, -1.712 ], "P_xyz": [ 1.464, 7.846, -1.448 ], "form": ".", "ssZp": 2.323, "Dp": 4.424, "splay_angle": 29.576, "splay_distance": 5.026, "splay_ratio": 0.282, "d22": null, "d64": null, "eta": 175.676, "theta": -130.857, "eta_prime": -172.531, "theta_prime": -127.541, "eta_base": -117.712, "theta_base": -78.274, "v0": 10.521, "v1": -24.275, "v2": 28.125, "v3": -22.853, "v4": 7.933, "amplitude": 28.155, "phase_angle": 357.348, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.019, "origin": [ 171.703, 240.717, 203.091 ], "x_axis": [ -0.754, 0.268, 0.600 ], "y_axis": [ -0.648, -0.453, -0.612 ], "z_axis": [ 0.108, -0.850, 0.515 ], "quaternion": [ 0.278, 0.214, -0.443, 0.825 ] } }, { "index": 177, "index_chain": 177, "chain_name": "A", "nt_resnum": 179, "nt_name": "A", "nt_code": "A", "nt_id": "///A/179", "linked_nts": [ "///A/178", "///A/180" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,phosphate", "alpha": -54.060, "beta": 154.487, "gamma": 65.282, "delta": 94.794, "epsilon": -87.543, "zeta": -70.784, "epsilon_zeta": -16.759, "bb_type": "--", "chi": -104.767, "glyco_bond": "anti", "C5prime_xyz": [ -1.650, 7.745, -2.412 ], "P_xyz": [ 0.469, 6.858, -3.686 ], "form": ".", "ssZp": 0.254, "Dp": 4.427, "splay_angle": 72.015, "splay_distance": 11.559, "splay_ratio": 0.591, "d22": null, "d64": null, "eta": -161.599, "theta": -78.149, "eta_prime": -143.477, "theta_prime": -78.489, "eta_base": -95.704, "theta_base": -52.593, "v0": 5.952, "v1": -21.448, "v2": 27.848, "v3": -25.207, "v4": 12.308, "amplitude": 28.042, "phase_angle": 6.731, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.243, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 168.066, 237.371, 204.007 ], "x_axis": [ -0.979, -0.183, 0.087 ], "y_axis": [ 0.099, -0.807, -0.583 ], "z_axis": [ 0.177, -0.562, 0.808 ], "quaternion": [ -0.074, 0.070, -0.302, 0.948 ] } }, { "index": 178, "index_chain": 178, "chain_name": "A", "nt_resnum": 180, "nt_name": "G", "nt_code": "G", "nt_id": "///A/180", "linked_nts": [ "///A/179", "///A/181" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop", "alpha": -72.789, "beta": -176.953, "gamma": 64.927, "delta": 83.822, "epsilon": -159.366, "zeta": -69.200, "epsilon_zeta": -90.166, "bb_type": "BI", "chi": -159.760, "glyco_bond": "anti", "C5prime_xyz": [ -1.395, 8.656, 0.518 ], "P_xyz": [ 1.195, 8.974, 0.549 ], "form": "A", "ssZp": 4.408, "Dp": 4.562, "splay_angle": 20.703, "splay_distance": 3.357, "splay_ratio": 0.184, "d22": null, "d64": null, "eta": 156.416, "theta": -145.814, "eta_prime": -167.931, "theta_prime": -147.881, "eta_base": -140.590, "theta_base": -129.631, "v0": 4.201, "v1": -25.824, "v2": 36.410, "v3": -34.952, "v4": 19.405, "amplitude": 37.258, "phase_angle": 12.251, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.106, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 161.987, 229.722, 197.831 ], "x_axis": [ 0.182, 0.659, -0.730 ], "y_axis": [ 0.983, -0.093, 0.161 ], "z_axis": [ 0.038, -0.746, -0.664 ], "quaternion": [ 0.326, 0.696, 0.590, -0.248 ] } }, { "index": 179, "index_chain": 179, "chain_name": "A", "nt_resnum": 181, "nt_name": "G", "nt_code": "G", "nt_id": "///A/181", "linked_nts": [ "///A/180", "///A/182" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop", "alpha": -67.271, "beta": 167.778, "gamma": 66.602, "delta": 81.250, "epsilon": -140.893, "zeta": -74.410, "epsilon_zeta": -66.482, "bb_type": "BI", "chi": -159.211, "glyco_bond": "anti", "C5prime_xyz": [ -1.600, 8.859, 0.434 ], "P_xyz": [ 0.943, 9.441, 0.208 ], "form": ".", "ssZp": 4.297, "Dp": 4.571, "splay_angle": 17.494, "splay_distance": 2.780, "splay_ratio": 0.153, "d22": null, "d64": null, "eta": 176.207, "theta": -138.955, "eta_prime": -170.247, "theta_prime": -130.737, "eta_base": -137.265, "theta_base": -67.626, "v0": -2.449, "v1": -20.080, "v2": 33.674, "v3": -35.998, "v4": 24.253, "amplitude": 36.410, "phase_angle": 22.355, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.665, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 160.512, 228.121, 195.276 ], "x_axis": [ 0.612, 0.490, -0.621 ], "y_axis": [ 0.783, -0.488, 0.386 ], "z_axis": [ -0.114, -0.722, -0.682 ], "quaternion": [ 0.332, 0.834, 0.382, -0.220 ] } }, { "index": 180, "index_chain": 180, "chain_name": "A", "nt_resnum": 182, "nt_name": "C", "nt_code": "C", "nt_id": "///A/182", "linked_nts": [ "///A/181", "///A/183" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,junction-loop", "alpha": -57.235, "beta": 155.087, "gamma": 78.725, "delta": 147.645, "epsilon": -93.316, "zeta": -89.815, "epsilon_zeta": -3.501, "bb_type": "--", "chi": -100.982, "glyco_bond": "anti", "C5prime_xyz": [ -2.437, 8.142, -2.068 ], "P_xyz": [ -0.012, 8.328, -3.037 ], "form": ".", "ssZp": 0.713, "Dp": 0.720, "splay_angle": 76.169, "splay_distance": 12.887, "splay_ratio": 0.617, "d22": null, "d64": null, "eta": -153.084, "theta": -77.981, "eta_prime": -119.692, "theta_prime": -129.605, "eta_base": -58.250, "theta_base": -146.056, "v0": -24.372, "v1": 38.540, "v2": -37.208, "v3": 24.072, "v4": -0.029, "amplitude": 39.287, "phase_angle": 161.278, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.321, "filter_rmsd": 0.059, "frame": { "rmsd": 0.008, "origin": [ 162.457, 227.658, 193.344 ], "x_axis": [ 0.941, 0.044, -0.336 ], "y_axis": [ 0.087, -0.990, 0.115 ], "z_axis": [ -0.327, -0.137, -0.935 ], "quaternion": [ 0.064, 0.983, 0.033, -0.169 ] } }, { "index": 181, "index_chain": 181, "chain_name": "A", "nt_resnum": 183, "nt_name": "A", "nt_code": "A", "nt_id": "///A/183", "linked_nts": [ "///A/182", "///A/184" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,splayed-apart", "alpha": -72.514, "beta": 152.088, "gamma": -66.791, "delta": 150.969, "epsilon": -100.967, "zeta": -123.386, "epsilon_zeta": 22.419, "bb_type": "--", "chi": -106.484, "glyco_bond": "anti", "C5prime_xyz": [ -1.766, 8.110, -1.817 ], "P_xyz": [ -0.932, 10.590, -1.837 ], "form": ".", "ssZp": 0.577, "Dp": 0.947, "splay_angle": 138.803, "splay_distance": 18.330, "splay_ratio": 0.936, "d22": null, "d64": null, "eta": 49.640, "theta": -164.926, "eta_prime": 88.628, "theta_prime": 160.218, "eta_base": 98.809, "theta_base": 132.771, "v0": -16.709, "v1": 32.726, "v2": -35.420, "v3": 26.685, "v4": -6.470, "amplitude": 35.813, "phase_angle": 171.506, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "2o", "suiteness": 0.222, "filter_rmsd": 0.039, "frame": { "rmsd": 0.011, "origin": [ 152.845, 222.607, 186.403 ], "x_axis": [ -0.274, 0.892, 0.360 ], "y_axis": [ 0.542, -0.166, 0.824 ], "z_axis": [ 0.795, 0.421, -0.438 ], "quaternion": [ 0.175, 0.577, 0.621, 0.501 ] } }, { "index": 182, "index_chain": 182, "chain_name": "A", "nt_resnum": 184, "nt_name": "G", "nt_code": "G", "nt_id": "///A/184", "linked_nts": [ "///A/183", "///A/185" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,junction-loop,splayed-apart", "alpha": -170.713, "beta": 121.727, "gamma": -15.576, "delta": 149.476, "epsilon": -99.052, "zeta": -83.455, "epsilon_zeta": -15.597, "bb_type": "--", "chi": -73.384, "glyco_bond": "anti", "C5prime_xyz": [ -2.855, 7.046, -2.935 ], "P_xyz": [ -0.902, 8.793, -2.989 ], "form": ".", "ssZp": 0.261, "Dp": 0.903, "splay_angle": 139.738, "splay_distance": 18.326, "splay_ratio": 0.939, "d22": null, "d64": null, "eta": 18.976, "theta": -56.828, "eta_prime": 51.646, "theta_prime": -70.511, "eta_base": 63.815, "theta_base": -30.528, "v0": -19.467, "v1": 34.696, "v2": -35.820, "v3": 25.512, "v4": -4.002, "amplitude": 36.705, "phase_angle": 167.397, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 161.884, 207.416, 191.251 ], "x_axis": [ -0.716, -0.287, 0.636 ], "y_axis": [ -0.510, 0.838, -0.196 ], "z_axis": [ -0.477, -0.464, -0.746 ], "quaternion": [ -0.306, -0.219, 0.908, -0.182 ] } }, { "index": 183, "index_chain": 183, "chain_name": "A", "nt_resnum": 185, "nt_name": "A", "nt_code": "A", "nt_id": "///A/185", "linked_nts": [ "///A/184", "///A/186" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,A-minor,ribose-zipper,splayed-apart", "alpha": -54.527, "beta": -169.906, "gamma": 61.610, "delta": 79.428, "epsilon": -143.985, "zeta": -67.956, "epsilon_zeta": -76.029, "bb_type": "BI", "chi": -178.429, "glyco_bond": "anti", "C5prime_xyz": [ -1.596, 8.470, 1.549 ], "P_xyz": [ 0.845, 8.865, 2.413 ], "form": "A", "ssZp": 4.699, "Dp": 4.683, "splay_angle": 29.360, "splay_distance": 4.538, "splay_ratio": 0.257, "d22": null, "d64": null, "eta": -172.166, "theta": -139.320, "eta_prime": -135.544, "theta_prime": -136.013, "eta_base": -130.887, "theta_base": -100.597, "v0": 0.958, "v1": -23.953, "v2": 36.554, "v3": -36.992, "v4": 22.762, "amplitude": 38.267, "phase_angle": 17.208, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.629, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 156.273, 223.757, 185.138 ], "x_axis": [ 0.583, 0.344, 0.736 ], "y_axis": [ 0.321, -0.930, 0.181 ], "z_axis": [ 0.747, 0.131, -0.652 ], "quaternion": [ 0.014, 0.889, 0.187, 0.417 ] } }, { "index": 184, "index_chain": 184, "chain_name": "A", "nt_resnum": 186, "nt_name": "C", "nt_code": "C", "nt_id": "///A/186", "linked_nts": [ "///A/185", "///A/187" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,junction-loop,A-minor,ribose-zipper", "alpha": -64.397, "beta": 174.897, "gamma": 53.123, "delta": 77.548, "epsilon": -136.446, "zeta": -63.815, "epsilon_zeta": -72.630, "bb_type": "BI", "chi": -178.844, "glyco_bond": "anti", "C5prime_xyz": [ -1.475, 8.490, 1.582 ], "P_xyz": [ 1.025, 8.893, 2.209 ], "form": ".", "ssZp": 4.776, "Dp": 4.760, "splay_angle": 39.435, "splay_distance": 6.179, "splay_ratio": 0.344, "d22": 4.950, "d64": 5.796, "eta": 168.049, "theta": -131.535, "eta_prime": -176.812, "theta_prime": -125.869, "eta_base": -123.992, "theta_base": -97.687, "v0": 3.190, "v1": -27.066, "v2": 39.396, "v3": -38.543, "v4": 22.248, "amplitude": 40.626, "phase_angle": 14.135, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.952, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 159.803, 226.219, 183.699 ], "x_axis": [ 0.606, -0.367, 0.706 ], "y_axis": [ -0.262, -0.930, -0.259 ], "z_axis": [ 0.752, -0.028, -0.659 ], "quaternion": [ -0.065, 0.894, -0.176, 0.408 ] } }, { "index": 185, "index_chain": 185, "chain_name": "A", "nt_resnum": 187, "nt_name": "C", "nt_code": "C", "nt_id": "///A/187", "linked_nts": [ "///A/186", "///A/188" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,bulge", "alpha": -61.595, "beta": -168.514, "gamma": 57.709, "delta": 81.369, "epsilon": -171.409, "zeta": -76.251, "epsilon_zeta": -95.158, "bb_type": "BI", "chi": -163.665, "glyco_bond": "anti", "C5prime_xyz": [ -1.548, 8.823, 0.710 ], "P_xyz": [ 0.876, 9.467, 1.458 ], "form": "A", "ssZp": 4.302, "Dp": 4.342, "splay_angle": 21.072, "splay_distance": 3.516, "splay_ratio": 0.189, "d22": 4.353, "d64": 4.457, "eta": -178.817, "theta": -139.105, "eta_prime": -160.113, "theta_prime": -145.785, "eta_base": -117.445, "theta_base": -122.779, "v0": -2.515, "v1": -19.875, "v2": 33.385, "v3": -35.800, "v4": 24.148, "amplitude": 36.139, "phase_angle": 22.514, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.782, "filter_rmsd": 0.059, "frame": { "rmsd": 0.009, "origin": [ 165.901, 226.251, 182.700 ], "x_axis": [ 0.165, -0.894, 0.417 ], "y_axis": [ -0.742, -0.391, -0.545 ], "z_axis": [ 0.650, -0.219, -0.728 ], "quaternion": [ -0.108, 0.756, -0.541, 0.353 ] } }, { "index": 186, "index_chain": 186, "chain_name": "A", "nt_resnum": 188, "nt_name": "C", "nt_code": "C", "nt_id": "///A/188", "linked_nts": [ "///A/187", "///A/189" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 176.835, "beta": -160.244, "gamma": 148.836, "delta": 79.571, "epsilon": -128.259, "zeta": -79.090, "epsilon_zeta": -49.169, "bb_type": "BI", "chi": -178.634, "glyco_bond": "anti", "C5prime_xyz": [ -1.406, 8.508, 1.611 ], "P_xyz": [ 0.791, 9.681, 0.874 ], "form": "A", "ssZp": 4.646, "Dp": 4.688, "splay_angle": 20.685, "splay_distance": 3.452, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": 158.011, "theta": -149.021, "eta_prime": 171.526, "theta_prime": -149.677, "eta_base": -149.116, "theta_base": -127.224, "v0": 1.139, "v1": -23.907, "v2": 36.380, "v3": -36.757, "v4": 22.390, "amplitude": 38.030, "phase_angle": 16.939, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.019, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 169.284, 225.853, 181.829 ], "x_axis": [ -0.321, -0.934, 0.154 ], "y_axis": [ -0.678, 0.113, -0.726 ], "z_axis": [ 0.661, -0.338, -0.670 ], "quaternion": [ 0.175, -0.556, 0.725, -0.367 ] } }, { "index": 187, "index_chain": 187, "chain_name": "A", "nt_resnum": 189, "nt_name": "G", "nt_code": "G", "nt_id": "///A/189", "linked_nts": [ "///A/188", "///A/190" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -61.541, "beta": 161.934, "gamma": 55.752, "delta": 77.974, "epsilon": -159.656, "zeta": -73.167, "epsilon_zeta": -86.489, "bb_type": "BI", "chi": -170.421, "glyco_bond": "anti", "C5prime_xyz": [ -2.038, 8.767, 1.038 ], "P_xyz": [ 0.398, 9.616, 1.401 ], "form": "A", "ssZp": 4.423, "Dp": 4.459, "splay_angle": 25.252, "splay_distance": 4.000, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 158.977, "theta": -155.681, "eta_prime": 177.054, "theta_prime": -155.719, "eta_base": -142.613, "theta_base": -130.262, "v0": -4.288, "v1": -19.779, "v2": 34.874, "v3": -38.342, "v4": 26.871, "amplitude": 38.434, "phase_angle": 24.857, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.720, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 172.114, 223.897, 181.533 ], "x_axis": [ -0.736, -0.668, -0.113 ], "y_axis": [ -0.381, 0.546, -0.746 ], "z_axis": [ 0.560, -0.506, -0.656 ], "quaternion": [ 0.196, -0.306, 0.857, -0.365 ] } }, { "index": 188, "index_chain": 188, "chain_name": "A", "nt_resnum": 190, "nt_name": "G", "nt_code": "G", "nt_id": "///A/190", "linked_nts": [ "///A/189", "///A/191" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -64.518, "beta": -175.706, "gamma": 49.124, "delta": 80.887, "epsilon": -161.592, "zeta": -78.070, "epsilon_zeta": -83.521, "bb_type": "BI", "chi": -162.271, "glyco_bond": "anti", "C5prime_xyz": [ -1.303, 8.742, 0.671 ], "P_xyz": [ 1.187, 9.193, 1.334 ], "form": "A", "ssZp": 4.417, "Dp": 4.520, "splay_angle": 22.629, "splay_distance": 3.818, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 172.072, "theta": -131.550, "eta_prime": -179.388, "theta_prime": -137.086, "eta_base": -142.916, "theta_base": -115.127, "v0": 1.526, "v1": -23.752, "v2": 35.732, "v3": -35.849, "v4": 21.642, "amplitude": 37.233, "phase_angle": 16.327, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.857, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 174.630, 220.901, 180.696 ], "x_axis": [ -0.845, -0.235, -0.481 ], "y_axis": [ 0.070, 0.842, -0.534 ], "z_axis": [ 0.531, -0.485, -0.695 ], "quaternion": [ 0.275, -0.045, 0.919, -0.277 ] } }, { "index": 189, "index_chain": 189, "chain_name": "A", "nt_resnum": 191, "nt_name": "G", "nt_code": "G", "nt_id": "///A/191", "linked_nts": [ "///A/190", "///A/192" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": 169.234, "beta": -157.607, "gamma": 159.445, "delta": 81.644, "epsilon": -123.638, "zeta": -64.470, "epsilon_zeta": -59.167, "bb_type": "--", "chi": -178.196, "glyco_bond": "anti", "C5prime_xyz": [ -1.527, 8.481, 1.588 ], "P_xyz": [ 0.491, 9.855, 0.668 ], "form": ".", "ssZp": 4.624, "Dp": 4.679, "splay_angle": 32.991, "splay_distance": 5.175, "splay_ratio": 0.285, "d22": null, "d64": null, "eta": 162.296, "theta": -133.408, "eta_prime": 177.758, "theta_prime": -130.330, "eta_base": -143.687, "theta_base": -77.947, "v0": 1.573, "v1": -23.391, "v2": 35.153, "v3": -35.235, "v4": 21.234, "amplitude": 36.613, "phase_angle": 16.236, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.344, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 175.151, 217.553, 178.937 ], "x_axis": [ -0.777, 0.305, -0.550 ], "y_axis": [ 0.515, 0.811, -0.278 ], "z_axis": [ 0.361, -0.500, -0.787 ], "quaternion": [ 0.248, 0.223, 0.919, -0.212 ] } }, { "index": 190, "index_chain": 190, "chain_name": "A", "nt_resnum": 192, "nt_name": "G", "nt_code": "G", "nt_id": "///A/192", "linked_nts": [ "///A/191", "///A/193" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -55.332, "beta": 164.030, "gamma": 47.121, "delta": 77.586, "epsilon": -165.784, "zeta": -93.112, "epsilon_zeta": -72.672, "bb_type": "BI", "chi": -163.889, "glyco_bond": "anti", "C5prime_xyz": [ -1.403, 8.738, 0.724 ], "P_xyz": [ 1.162, 9.197, 0.833 ], "form": ".", "ssZp": 4.494, "Dp": 4.549, "splay_angle": 73.955, "splay_distance": 11.542, "splay_ratio": 0.607, "d22": null, "d64": null, "eta": 152.819, "theta": 160.662, "eta_prime": -176.638, "theta_prime": 150.308, "eta_base": -96.946, "theta_base": 146.218, "v0": 2.087, "v1": -26.028, "v2": 38.888, "v3": -38.745, "v4": 23.044, "amplitude": 40.397, "phase_angle": 15.714, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.594, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 173.939, 217.922, 173.920 ], "x_axis": [ 0.047, 0.861, -0.507 ], "y_axis": [ 0.949, 0.120, 0.293 ], "z_axis": [ 0.313, -0.495, -0.811 ], "quaternion": [ 0.299, 0.659, 0.686, -0.074 ] } }, { "index": 191, "index_chain": 191, "chain_name": "A", "nt_resnum": 193, "nt_name": "A", "nt_code": "A", "nt_id": "///A/193", "linked_nts": [ "///A/192", "///A/194" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,ribose-zipper,phosphate", "alpha": -118.076, "beta": 111.732, "gamma": 153.764, "delta": 82.658, "epsilon": -104.542, "zeta": -101.680, "epsilon_zeta": -2.862, "bb_type": "--", "chi": 171.027, "glyco_bond": "anti", "C5prime_xyz": [ -1.601, 8.099, 2.150 ], "P_xyz": [ -0.910, 10.398, 1.128 ], "form": "A", "ssZp": 4.652, "Dp": 4.690, "splay_angle": 23.276, "splay_distance": 3.533, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": -160.281, "theta": 175.291, "eta_prime": 175.993, "theta_prime": -170.502, "eta_base": 153.253, "theta_base": -123.769, "v0": 3.396, "v1": -24.602, "v2": 35.259, "v3": -34.344, "v4": 19.501, "amplitude": 36.245, "phase_angle": 13.398, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.434, "filter_rmsd": 0.042, "frame": { "rmsd": 0.013, "origin": [ 174.624, 206.759, 176.769 ], "x_axis": [ -0.793, 0.449, -0.411 ], "y_axis": [ 0.569, 0.786, -0.240 ], "z_axis": [ 0.216, -0.424, -0.880 ], "quaternion": [ 0.168, 0.274, 0.930, -0.178 ] } }, { "index": 192, "index_chain": 192, "chain_name": "A", "nt_resnum": 194, "nt_name": "A", "nt_code": "A", "nt_id": "///A/194", "linked_nts": [ "///A/193", "///A/195" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper,phosphate", "alpha": -54.758, "beta": 134.516, "gamma": 62.216, "delta": 81.450, "epsilon": -148.807, "zeta": -79.482, "epsilon_zeta": -69.325, "bb_type": "BI", "chi": -174.777, "glyco_bond": "anti", "C5prime_xyz": [ -1.505, 8.503, 1.376 ], "P_xyz": [ 1.057, 8.630, 0.921 ], "form": "A", "ssZp": 4.610, "Dp": 4.616, "splay_angle": 25.514, "splay_distance": 3.919, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 156.002, "theta": -143.938, "eta_prime": 178.724, "theta_prime": -150.230, "eta_base": -123.350, "theta_base": -131.296, "v0": 1.241, "v1": -23.576, "v2": 35.658, "v3": -35.967, "v4": 21.909, "amplitude": 37.240, "phase_angle": 16.764, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.870, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 174.087, 205.200, 173.645 ], "x_axis": [ -0.221, 0.824, -0.521 ], "y_axis": [ 0.957, 0.287, 0.047 ], "z_axis": [ 0.188, -0.488, -0.852 ], "quaternion": [ 0.231, 0.580, 0.768, -0.144 ] } }, { "index": 193, "index_chain": 193, "chain_name": "A", "nt_resnum": 195, "nt_name": "C", "nt_code": "C", "nt_id": "///A/195", "linked_nts": [ "///A/194", "///A/196" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -59.630, "beta": 168.147, "gamma": 54.721, "delta": 80.666, "epsilon": -119.222, "zeta": -65.307, "epsilon_zeta": -53.916, "bb_type": "--", "chi": -173.586, "glyco_bond": "anti", "C5prime_xyz": [ -1.283, 8.568, 1.316 ], "P_xyz": [ 1.286, 8.796, 1.727 ], "form": ".", "ssZp": 4.635, "Dp": 4.746, "splay_angle": 42.415, "splay_distance": 6.581, "splay_ratio": 0.362, "d22": 4.328, "d64": 5.068, "eta": 177.639, "theta": -113.697, "eta_prime": -173.601, "theta_prime": -106.452, "eta_base": -138.997, "theta_base": -68.556, "v0": 2.330, "v1": -24.870, "v2": 36.729, "v3": -36.360, "v4": 21.456, "amplitude": 38.052, "phase_angle": 15.154, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.926, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 172.884, 203.162, 170.521 ], "x_axis": [ 0.329, 0.847, -0.417 ], "y_axis": [ 0.912, -0.171, 0.372 ], "z_axis": [ 0.244, -0.503, -0.829 ], "quaternion": [ 0.287, 0.763, 0.576, -0.057 ] } }, { "index": 194, "index_chain": 194, "chain_name": "A", "nt_resnum": 196, "nt_name": "U", "nt_code": "U", "nt_id": "///A/196", "linked_nts": [ "///A/195", "///A/197" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -60.067, "beta": 165.016, "gamma": 67.543, "delta": 82.505, "epsilon": -156.309, "zeta": -67.960, "epsilon_zeta": -88.349, "bb_type": "BI", "chi": -163.012, "glyco_bond": "anti", "C5prime_xyz": [ -1.537, 8.708, 0.689 ], "P_xyz": [ 1.026, 9.192, 0.469 ], "form": "A", "ssZp": 4.408, "Dp": 4.523, "splay_angle": 22.039, "splay_distance": 3.476, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": 168.317, "theta": -143.236, "eta_prime": -159.320, "theta_prime": -144.325, "eta_base": -96.854, "theta_base": -112.043, "v0": 0.831, "v1": -22.671, "v2": 34.567, "v3": -35.044, "v4": 21.574, "amplitude": 36.203, "phase_angle": 17.290, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.406, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 176.893, 204.549, 165.490 ], "x_axis": [ 0.938, 0.306, 0.163 ], "y_axis": [ 0.165, -0.807, 0.568 ], "z_axis": [ 0.305, -0.506, -0.807 ], "quaternion": [ 0.285, 0.942, 0.125, 0.124 ] } }, { "index": 195, "index_chain": 195, "chain_name": "A", "nt_resnum": 197, "nt_name": "G", "nt_code": "G", "nt_id": "///A/197", "linked_nts": [ "///A/196", "///A/198" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BII,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop", "alpha": -72.332, "beta": 174.632, "gamma": 65.525, "delta": 89.433, "epsilon": -89.255, "zeta": -150.881, "epsilon_zeta": 61.627, "bb_type": "BII", "chi": -153.732, "glyco_bond": "anti", "C5prime_xyz": [ -1.514, 8.775, 0.216 ], "P_xyz": [ 1.082, 9.164, 0.323 ], "form": ".", "ssZp": 3.373, "Dp": 4.299, "splay_angle": 17.809, "splay_distance": 3.710, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": -167.365, "theta": -157.581, "eta_prime": -156.553, "theta_prime": -144.649, "eta_base": -116.400, "theta_base": -95.874, "v0": -0.289, "v1": -18.678, "v2": 29.351, "v3": -30.331, "v4": 19.357, "amplitude": 31.063, "phase_angle": 19.111, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.627, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 178.936, 204.177, 162.701 ], "x_axis": [ 0.830, -0.235, 0.506 ], "y_axis": [ -0.404, -0.879, 0.254 ], "z_axis": [ 0.385, -0.415, -0.825 ], "quaternion": [ 0.178, 0.940, -0.170, 0.237 ] } }, { "index": 196, "index_chain": 196, "chain_name": "A", "nt_resnum": 198, "nt_name": "A", "nt_code": "A", "nt_id": "///A/198", "linked_nts": [ "///A/197", "///A/199" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor,splayed-apart", "alpha": -34.019, "beta": 105.306, "gamma": 50.732, "delta": 89.933, "epsilon": -69.216, "zeta": -41.341, "epsilon_zeta": -27.875, "bb_type": "--", "chi": -113.585, "glyco_bond": "anti", "C5prime_xyz": [ -1.880, 8.171, -2.039 ], "P_xyz": [ 0.324, 6.998, -2.824 ], "form": ".", "ssZp": 0.619, "Dp": 4.123, "splay_angle": 110.096, "splay_distance": 17.262, "splay_ratio": 0.820, "d22": null, "d64": null, "eta": -167.748, "theta": -1.720, "eta_prime": -157.022, "theta_prime": -22.484, "eta_base": -113.517, "theta_base": -12.949, "v0": 0.013, "v1": -18.397, "v2": 28.539, "v3": -29.304, "v4": 18.557, "amplitude": 30.100, "phase_angle": 18.537, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 179.318, 200.945, 160.921 ], "x_axis": [ 0.576, -0.697, 0.427 ], "y_axis": [ -0.567, -0.717, -0.406 ], "z_axis": [ 0.589, -0.008, -0.808 ], "quaternion": [ -0.113, 0.881, -0.359, 0.288 ] } }, { "index": 197, "index_chain": 197, "chain_name": "A", "nt_resnum": 199, "nt_name": "A", "nt_code": "A", "nt_id": "///A/199", "linked_nts": [ "///A/198", "///A/200" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 145.217, "beta": -159.183, "gamma": -63.659, "delta": 147.364, "epsilon": -70.233, "zeta": -92.806, "epsilon_zeta": 22.573, "bb_type": "--", "chi": -76.005, "glyco_bond": "anti", "C5prime_xyz": [ -2.606, 7.095, -2.913 ], "P_xyz": [ -2.702, 8.842, -4.865 ], "form": ".", "ssZp": -0.360, "Dp": 0.553, "splay_angle": 99.129, "splay_distance": 14.628, "splay_ratio": 0.762, "d22": null, "d64": null, "eta": -63.367, "theta": -27.434, "eta_prime": -33.211, "theta_prime": -49.886, "eta_base": -36.588, "theta_base": -25.986, "v0": -16.694, "v1": 31.908, "v2": -34.031, "v3": 25.323, "v4": -5.638, "amplitude": 34.510, "phase_angle": 170.439, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 168.600, 187.416, 160.677 ], "x_axis": [ -0.538, -0.536, -0.650 ], "y_axis": [ 0.590, 0.312, -0.745 ], "z_axis": [ 0.602, -0.784, 0.148 ], "quaternion": [ 0.480, 0.021, 0.652, -0.586 ] } }, { "index": 198, "index_chain": 198, "chain_name": "A", "nt_resnum": 200, "nt_name": "A", "nt_code": "A", "nt_id": "///A/200", "linked_nts": [ "///A/199", "///A/201" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-pair-contact,hairpin-loop,cap-donor,splayed-apart", "alpha": -164.068, "beta": -123.385, "gamma": 89.758, "delta": 78.243, "epsilon": 147.484, "zeta": -77.504, "epsilon_zeta": -135.012, "bb_type": "BI", "chi": -167.639, "glyco_bond": "anti", "C5prime_xyz": [ -1.886, 8.797, 0.887 ], "P_xyz": [ 0.586, 8.866, 1.720 ], "form": ".", "ssZp": 3.744, "Dp": 3.834, "splay_angle": 141.852, "splay_distance": 16.162, "splay_ratio": 0.945, "d22": null, "d64": null, "eta": 85.929, "theta": 169.017, "eta_prime": 146.870, "theta_prime": 117.807, "eta_base": 154.283, "theta_base": 57.184, "v0": -4.873, "v1": -17.897, "v2": 32.358, "v3": -36.092, "v4": 25.884, "amplitude": 36.056, "phase_angle": 26.177, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 173.822, 195.875, 149.947 ], "x_axis": [ -0.802, -0.578, 0.150 ], "y_axis": [ 0.427, -0.379, 0.821 ], "z_axis": [ -0.418, 0.723, 0.551 ], "quaternion": [ -0.304, -0.081, 0.467, 0.826 ] } }, { "index": 199, "index_chain": 199, "chain_name": "A", "nt_resnum": 201, "nt_name": "C", "nt_code": "C", "nt_id": "///A/201", "linked_nts": [ "///A/200", "///A/202" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart", "alpha": 179.865, "beta": 119.031, "gamma": 76.059, "delta": 142.971, "epsilon": -25.067, "zeta": 79.854, "epsilon_zeta": 255.079, "bb_type": "--", "chi": -136.178, "glyco_bond": "anti", "C5prime_xyz": [ -1.753, 8.776, -0.419 ], "P_xyz": [ 0.778, 8.284, -0.776 ], "form": ".", "ssZp": -0.446, "Dp": 0.479, "splay_angle": 22.135, "splay_distance": 3.689, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 138.016, "theta": 71.187, "eta_prime": 98.966, "theta_prime": 71.217, "eta_base": 101.765, "theta_base": 117.567, "v0": -22.194, "v1": 34.915, "v2": -33.583, "v3": 21.596, "v4": 0.158, "amplitude": 35.526, "phase_angle": 160.960, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 185.410, 197.064, 161.150 ], "x_axis": [ -0.637, -0.604, 0.479 ], "y_axis": [ -0.710, 0.219, -0.669 ], "z_axis": [ 0.299, -0.767, -0.568 ], "quaternion": [ -0.058, -0.422, 0.778, -0.461 ] } }, { "index": 200, "index_chain": 200, "chain_name": "A", "nt_resnum": 202, "nt_name": "A", "nt_code": "A", "nt_id": "///A/202", "linked_nts": [ "///A/201", "///A/203" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BII,non-pair-contact,hairpin-loop,cap-donor,splayed-apart", "alpha": 178.894, "beta": 123.861, "gamma": 123.200, "delta": 81.018, "epsilon": -83.875, "zeta": -154.691, "epsilon_zeta": 70.817, "bb_type": "BII", "chi": 73.919, "glyco_bond": "syn", "C5prime_xyz": [ -4.981, 4.636, 2.391 ], "P_xyz": [ -4.147, 5.119, 4.829 ], "form": ".", "ssZp": -0.211, "Dp": 4.349, "splay_angle": 132.963, "splay_distance": 13.547, "splay_ratio": 0.918, "d22": null, "d64": null, "eta": 167.282, "theta": -153.112, "eta_prime": 139.237, "theta_prime": -135.590, "eta_base": -171.269, "theta_base": -120.600, "v0": -4.006, "v1": -19.065, "v2": 33.452, "v3": -36.708, "v4": 25.703, "amplitude": 36.821, "phase_angle": 24.699, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.043, "frame": { "rmsd": 0.011, "origin": [ 185.798, 200.733, 161.131 ], "x_axis": [ -0.274, -0.864, 0.422 ], "y_axis": [ -0.925, 0.116, -0.362 ], "z_axis": [ 0.264, -0.489, -0.831 ], "quaternion": [ -0.053, -0.600, 0.745, -0.286 ] } }, { "index": 201, "index_chain": 201, "chain_name": "A", "nt_resnum": 203, "nt_name": "U", "nt_code": "U", "nt_id": "///A/203", "linked_nts": [ "///A/202", "///A/204" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 32.163, "beta": 92.510, "gamma": 112.798, "delta": 83.676, "epsilon": -117.945, "zeta": 102.166, "epsilon_zeta": 139.888, "bb_type": "--", "chi": 45.379, "glyco_bond": "syn", "C5prime_xyz": [ -5.459, 3.745, 0.986 ], "P_xyz": [ -4.656, 3.481, 3.458 ], "form": ".", "ssZp": -2.914, "Dp": 4.522, "splay_angle": 113.946, "splay_distance": 14.381, "splay_ratio": 0.839, "d22": 8.956, "d64": 10.986, "eta": -95.559, "theta": 27.239, "eta_prime": -84.561, "theta_prime": 18.574, "eta_base": -92.341, "theta_base": 2.802, "v0": -1.927, "v1": -19.122, "v2": 31.617, "v3": -33.642, "v4": 22.474, "amplitude": 34.053, "phase_angle": 21.800, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.110, "frame": { "rmsd": 0.009, "origin": [ 187.975, 212.820, 155.413 ], "x_axis": [ 0.964, 0.130, -0.232 ], "y_axis": [ 0.262, -0.605, 0.752 ], "z_axis": [ -0.043, -0.785, -0.618 ], "quaternion": [ 0.430, 0.893, 0.110, -0.077 ] } }, { "index": 202, "index_chain": 202, "chain_name": "A", "nt_resnum": 204, "nt_name": "C", "nt_code": "C", "nt_id": "///A/204", "linked_nts": [ "///A/203", "///A/205" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop,cap-acceptor,splayed-apart", "alpha": -148.886, "beta": 162.394, "gamma": 83.064, "delta": 86.613, "epsilon": -157.601, "zeta": -49.720, "epsilon_zeta": -107.881, "bb_type": "BI", "chi": -173.766, "glyco_bond": "anti", "C5prime_xyz": [ -1.427, 8.622, 1.296 ], "P_xyz": [ 1.165, 8.997, 1.167 ], "form": ".", "ssZp": 4.256, "Dp": 4.369, "splay_angle": 24.698, "splay_distance": 3.888, "splay_ratio": 0.214, "d22": 4.242, "d64": 3.751, "eta": 145.741, "theta": -123.454, "eta_prime": 177.415, "theta_prime": -126.855, "eta_base": -122.770, "theta_base": -80.554, "v0": -0.230, "v1": -19.675, "v2": 30.807, "v3": -31.825, "v4": 20.262, "amplitude": 32.582, "phase_angle": 18.997, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 179.308, 203.558, 162.188 ], "x_axis": [ 0.815, -0.205, 0.542 ], "y_axis": [ 0.378, 0.897, -0.229 ], "z_axis": [ -0.439, 0.392, 0.808 ], "quaternion": [ 0.938, -0.165, -0.262, -0.155 ] } }, { "index": 203, "index_chain": 203, "chain_name": "A", "nt_resnum": 205, "nt_name": "U", "nt_code": "U", "nt_id": "///A/205", "linked_nts": [ "///A/204", "///A/206" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -89.342, "beta": -168.991, "gamma": 59.870, "delta": 89.994, "epsilon": -152.686, "zeta": -65.317, "epsilon_zeta": -87.369, "bb_type": "BI", "chi": -143.507, "glyco_bond": "anti", "C5prime_xyz": [ -1.452, 8.702, -0.390 ], "P_xyz": [ 1.109, 9.134, 0.012 ], "form": ".", "ssZp": 3.660, "Dp": 4.300, "splay_angle": 25.486, "splay_distance": 4.149, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 164.489, "theta": -133.682, "eta_prime": -170.494, "theta_prime": -133.976, "eta_base": -104.007, "theta_base": -82.282, "v0": 0.506, "v1": -18.656, "v2": 28.595, "v3": -29.091, "v4": 18.077, "amplitude": 30.008, "phase_angle": 17.652, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.317, "filter_rmsd": 0.101, "frame": { "rmsd": 0.012, "origin": [ 179.794, 204.497, 165.930 ], "x_axis": [ 0.799, 0.582, 0.154 ], "y_axis": [ -0.458, 0.754, -0.470 ], "z_axis": [ -0.390, 0.305, 0.869 ], "quaternion": [ 0.925, -0.210, -0.147, 0.281 ] } }, { "index": 204, "index_chain": 204, "chain_name": "A", "nt_resnum": 206, "nt_name": "A", "nt_code": "A", "nt_id": "///A/206", "linked_nts": [ "///A/205", "///A/207" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -76.451, "beta": 160.895, "gamma": 65.739, "delta": 83.857, "epsilon": -87.611, "zeta": -28.962, "epsilon_zeta": -58.649, "bb_type": "--", "chi": -145.779, "glyco_bond": "anti", "C5prime_xyz": [ -1.172, 8.612, -0.376 ], "P_xyz": [ 1.244, 8.624, -1.407 ], "form": ".", "ssZp": 3.132, "Dp": 4.744, "splay_angle": 24.637, "splay_distance": 4.107, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 177.237, "theta": -25.745, "eta_prime": -166.253, "theta_prime": -61.201, "eta_base": -104.071, "theta_base": -100.842, "v0": 6.036, "v1": -26.909, "v2": 36.392, "v3": -33.865, "v4": 17.635, "amplitude": 36.888, "phase_angle": 9.407, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.577, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 179.640, 207.809, 168.424 ], "x_axis": [ 0.173, 0.975, -0.142 ], "y_axis": [ -0.958, 0.133, -0.255 ], "z_axis": [ -0.229, 0.180, 0.957 ], "quaternion": [ 0.752, -0.144, -0.029, 0.642 ] } }, { "index": 205, "index_chain": 205, "chain_name": "A", "nt_resnum": 207, "nt_name": "A", "nt_code": "A", "nt_id": "///A/207", "linked_nts": [ "///A/206", "///A/208" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 136.669, "beta": 154.791, "gamma": 126.698, "delta": 147.175, "epsilon": -150.636, "zeta": -137.402, "epsilon_zeta": -13.234, "bb_type": "--", "chi": -149.758, "glyco_bond": "anti", "C5prime_xyz": [ -1.684, 8.627, 0.447 ], "P_xyz": [ 0.732, 9.366, -0.242 ], "form": ".", "ssZp": 1.711, "Dp": 1.913, "splay_angle": 38.441, "splay_distance": 6.486, "splay_ratio": 0.331, "d22": null, "d64": null, "eta": 56.083, "theta": 174.727, "eta_prime": 119.044, "theta_prime": 148.199, "eta_base": 118.891, "theta_base": 155.986, "v0": -19.588, "v1": 34.115, "v2": -34.751, "v3": 24.327, "v4": -3.180, "amplitude": 35.778, "phase_angle": 166.238, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.011, "origin": [ 178.678, 211.047, 170.761 ], "x_axis": [ 0.221, -0.959, 0.179 ], "y_axis": [ -0.948, -0.255, -0.192 ], "z_axis": [ 0.230, -0.128, -0.965 ], "quaternion": [ -0.021, 0.781, -0.610, 0.131 ] } }, { "index": 206, "index_chain": 206, "chain_name": "A", "nt_resnum": 208, "nt_name": "G", "nt_code": "G", "nt_id": "///A/208", "linked_nts": [ "///A/207", "///A/209" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate", "alpha": -72.754, "beta": 90.750, "gamma": 178.168, "delta": 145.523, "epsilon": -140.189, "zeta": 148.094, "epsilon_zeta": 71.717, "bb_type": "--", "chi": -109.608, "glyco_bond": "anti", "C5prime_xyz": [ -2.383, 8.369, -1.738 ], "P_xyz": [ -3.193, 8.671, -4.221 ], "form": ".", "ssZp": 1.788, "Dp": 1.776, "splay_angle": 54.608, "splay_distance": 8.736, "splay_ratio": 0.460, "d22": null, "d64": null, "eta": -57.923, "theta": 40.098, "eta_prime": -90.707, "theta_prime": 66.888, "eta_base": -104.584, "theta_base": 88.824, "v0": -25.112, "v1": 38.133, "v2": -35.798, "v3": 22.243, "v4": 1.577, "amplitude": 38.379, "phase_angle": 158.870, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 179.855, 217.405, 171.278 ], "x_axis": [ 0.479, 0.668, -0.569 ], "y_axis": [ -0.873, 0.297, -0.387 ], "z_axis": [ -0.090, 0.682, 0.726 ], "quaternion": [ 0.791, -0.338, 0.151, 0.487 ] } }, { "index": 207, "index_chain": 207, "chain_name": "A", "nt_resnum": 209, "nt_name": "U", "nt_code": "U", "nt_id": "///A/209", "linked_nts": [ "///A/208", "///A/210" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate", "alpha": -89.150, "beta": 156.686, "gamma": 37.888, "delta": 82.491, "epsilon": -146.835, "zeta": -66.553, "epsilon_zeta": -80.282, "bb_type": "BI", "chi": -173.773, "glyco_bond": "anti", "C5prime_xyz": [ -1.555, 8.618, 1.295 ], "P_xyz": [ 0.880, 8.872, 2.218 ], "form": ".", "ssZp": 4.459, "Dp": 4.512, "splay_angle": 29.923, "splay_distance": 4.701, "splay_ratio": 0.259, "d22": null, "d64": null, "eta": 159.845, "theta": -135.227, "eta_prime": 149.365, "theta_prime": -133.364, "eta_base": 154.543, "theta_base": -101.220, "v0": -1.506, "v1": -20.213, "v2": 32.896, "v3": -34.725, "v4": 22.855, "amplitude": 35.237, "phase_angle": 21.005, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.698, "filter_rmsd": 0.102, "frame": { "rmsd": 0.009, "origin": [ 175.992, 210.221, 174.407 ], "x_axis": [ 0.706, 0.667, -0.239 ], "y_axis": [ -0.700, 0.604, -0.381 ], "z_axis": [ -0.110, 0.436, 0.893 ], "quaternion": [ 0.895, -0.228, 0.036, 0.382 ] } }, { "index": 208, "index_chain": 208, "chain_name": "A", "nt_resnum": 210, "nt_name": "A", "nt_code": "A", "nt_id": "///A/210", "linked_nts": [ "///A/209", "///A/211" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -70.608, "beta": -179.871, "gamma": 53.077, "delta": 80.494, "epsilon": -130.006, "zeta": -64.535, "epsilon_zeta": -65.472, "bb_type": "BI", "chi": -170.825, "glyco_bond": "anti", "C5prime_xyz": [ -1.498, 8.590, 1.140 ], "P_xyz": [ 0.986, 9.048, 1.822 ], "form": ".", "ssZp": 4.602, "Dp": 4.711, "splay_angle": 37.455, "splay_distance": 5.723, "splay_ratio": 0.321, "d22": null, "d64": null, "eta": 169.425, "theta": -123.009, "eta_prime": -176.095, "theta_prime": -115.736, "eta_base": -129.360, "theta_base": -64.934, "v0": 1.558, "v1": -24.047, "v2": 36.144, "v3": -36.210, "v4": 21.880, "amplitude": 37.654, "phase_angle": 16.279, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.953, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 177.206, 212.335, 178.427 ], "x_axis": [ 0.105, 0.849, -0.519 ], "y_axis": [ -0.956, -0.058, -0.287 ], "z_axis": [ -0.274, 0.526, 0.805 ], "quaternion": [ 0.681, -0.299, 0.090, 0.663 ] } }, { "index": 209, "index_chain": 209, "chain_name": "A", "nt_resnum": 211, "nt_name": "C", "nt_code": "C", "nt_id": "///A/211", "linked_nts": [ "///A/210", "///A/212" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -57.017, "beta": 162.123, "gamma": 54.526, "delta": 79.870, "epsilon": -137.262, "zeta": -84.677, "epsilon_zeta": -52.586, "bb_type": "BI", "chi": -168.848, "glyco_bond": "anti", "C5prime_xyz": [ -1.216, 8.616, 1.058 ], "P_xyz": [ 1.394, 8.808, 1.108 ], "form": "A", "ssZp": 4.635, "Dp": 4.736, "splay_angle": 20.678, "splay_distance": 3.280, "splay_ratio": 0.182, "d22": 4.332, "d64": 4.267, "eta": 163.638, "theta": -146.868, "eta_prime": -168.785, "theta_prime": -146.054, "eta_base": -95.125, "theta_base": -129.924, "v0": 3.978, "v1": -26.629, "v2": 37.965, "v3": -36.644, "v4": 20.605, "amplitude": 38.939, "phase_angle": 12.845, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.751, "filter_rmsd": 0.062, "frame": { "rmsd": 0.005, "origin": [ 175.127, 217.660, 178.710 ], "x_axis": [ -0.785, 0.301, -0.541 ], "y_axis": [ -0.528, -0.783, 0.330 ], "z_axis": [ -0.324, 0.545, 0.773 ], "quaternion": [ 0.227, -0.237, 0.239, 0.914 ] } }, { "index": 210, "index_chain": 210, "chain_name": "A", "nt_resnum": 212, "nt_name": "C", "nt_code": "C", "nt_id": "///A/212", "linked_nts": [ "///A/211", "///A/213" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -61.484, "beta": 163.807, "gamma": 56.749, "delta": 80.590, "epsilon": -149.514, "zeta": -73.145, "epsilon_zeta": -76.369, "bb_type": "BI", "chi": -163.361, "glyco_bond": "anti", "C5prime_xyz": [ -1.426, 8.778, 0.709 ], "P_xyz": [ 1.153, 9.183, 0.773 ], "form": "A", "ssZp": 4.436, "Dp": 4.582, "splay_angle": 25.624, "splay_distance": 4.059, "splay_ratio": 0.223, "d22": 4.480, "d64": 4.630, "eta": 166.528, "theta": -144.451, "eta_prime": 178.462, "theta_prime": -144.289, "eta_base": -151.219, "theta_base": -116.368, "v0": 0.416, "v1": -23.141, "v2": 35.819, "v3": -36.550, "v4": 22.783, "amplitude": 37.658, "phase_angle": 17.980, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.806, "filter_rmsd": 0.059, "frame": { "rmsd": 0.008, "origin": [ 174.831, 220.621, 180.089 ], "x_axis": [ -0.859, -0.227, -0.459 ], "y_axis": [ -0.150, -0.745, 0.650 ], "z_axis": [ -0.490, 0.628, 0.605 ], "quaternion": [ -0.021, -0.265, 0.357, 0.896 ] } }, { "index": 211, "index_chain": 211, "chain_name": "A", "nt_resnum": 213, "nt_name": "C", "nt_code": "C", "nt_id": "///A/213", "linked_nts": [ "///A/212", "///A/214" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -60.512, "beta": 171.537, "gamma": 54.273, "delta": 79.454, "epsilon": -144.445, "zeta": -76.234, "epsilon_zeta": -68.211, "bb_type": "BI", "chi": -159.524, "glyco_bond": "anti", "C5prime_xyz": [ -1.326, 8.776, 0.486 ], "P_xyz": [ 1.251, 9.199, 0.517 ], "form": "A", "ssZp": 4.403, "Dp": 4.668, "splay_angle": 27.181, "splay_distance": 4.448, "splay_ratio": 0.238, "d22": null, "d64": null, "eta": 171.432, "theta": -145.443, "eta_prime": -174.959, "theta_prime": -144.194, "eta_base": -132.420, "theta_base": -126.611, "v0": 1.609, "v1": -24.778, "v2": 37.307, "v3": -37.355, "v4": 22.546, "amplitude": 38.863, "phase_angle": 16.272, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.974, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 172.194, 223.542, 181.079 ], "x_axis": [ -0.787, -0.617, -0.010 ], "y_axis": [ 0.357, -0.467, 0.809 ], "z_axis": [ -0.504, 0.633, 0.587 ], "quaternion": [ -0.289, -0.152, 0.428, 0.843 ] } }, { "index": 212, "index_chain": 212, "chain_name": "A", "nt_resnum": 214, "nt_name": "G", "nt_code": "G", "nt_id": "///A/214", "linked_nts": [ "///A/213", "///A/215" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -53.972, "beta": 171.624, "gamma": 50.942, "delta": 78.497, "epsilon": -166.391, "zeta": -73.932, "epsilon_zeta": -92.459, "bb_type": "BI", "chi": -161.864, "glyco_bond": "anti", "C5prime_xyz": [ -1.654, 8.858, 0.575 ], "P_xyz": [ 0.819, 9.642, 0.859 ], "form": "A", "ssZp": 4.389, "Dp": 4.450, "splay_angle": 21.025, "splay_distance": 3.649, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 171.444, "theta": -133.512, "eta_prime": -174.747, "theta_prime": -142.725, "eta_base": -143.491, "theta_base": -116.485, "v0": -2.915, "v1": -20.646, "v2": 35.051, "v3": -37.695, "v4": 25.603, "amplitude": 38.050, "phase_angle": 22.899, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.867, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 168.810, 226.263, 182.041 ], "x_axis": [ -0.416, -0.886, 0.207 ], "y_axis": [ 0.684, -0.155, 0.712 ], "z_axis": [ -0.599, 0.438, 0.670 ], "quaternion": [ 0.524, 0.131, -0.384, -0.749 ] } }, { "index": 213, "index_chain": 213, "chain_name": "A", "nt_resnum": 215, "nt_name": "G", "nt_code": "G", "nt_id": "///A/215", "linked_nts": [ "///A/214", "///A/216" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,bulge", "alpha": 161.790, "beta": -163.967, "gamma": 165.738, "delta": 82.172, "epsilon": -89.846, "zeta": -110.146, "epsilon_zeta": 20.300, "bb_type": "--", "chi": -178.916, "glyco_bond": "anti", "C5prime_xyz": [ -1.341, 8.423, 1.628 ], "P_xyz": [ 0.516, 10.010, 0.720 ], "form": ".", "ssZp": 4.542, "Dp": 4.695, "splay_angle": 22.345, "splay_distance": 4.267, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 169.008, "theta": -140.518, "eta_prime": 178.673, "theta_prime": -150.886, "eta_base": -140.543, "theta_base": -166.257, "v0": 3.642, "v1": -25.285, "v2": 36.105, "v3": -34.971, "v4": 19.812, "amplitude": 37.070, "phase_angle": 13.099, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.661, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 165.280, 226.483, 182.939 ], "x_axis": [ 0.112, -0.886, 0.451 ], "y_axis": [ 0.740, 0.377, 0.556 ], "z_axis": [ -0.663, 0.271, 0.698 ], "quaternion": [ 0.740, 0.096, -0.376, -0.550 ] } }, { "index": 214, "index_chain": 214, "chain_name": "A", "nt_resnum": 216, "nt_name": "A", "nt_code": "A", "nt_id": "///A/216", "linked_nts": [ "///A/215", "///A/217" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,bulge", "alpha": 65.780, "beta": -103.196, "gamma": -122.661, "delta": 83.014, "epsilon": -139.251, "zeta": -77.605, "epsilon_zeta": -61.646, "bb_type": "BI", "chi": 177.910, "glyco_bond": "anti", "C5prime_xyz": [ -2.089, 8.504, 1.658 ], "P_xyz": [ -2.160, 10.738, 0.319 ], "form": ".", "ssZp": 4.238, "Dp": 4.356, "splay_angle": 20.263, "splay_distance": 3.188, "splay_ratio": 0.176, "d22": null, "d64": null, "eta": -176.278, "theta": 159.225, "eta_prime": -175.720, "theta_prime": -179.241, "eta_base": 178.497, "theta_base": -127.706, "v0": -6.674, "v1": -15.024, "v2": 29.578, "v3": -34.334, "v4": 25.901, "amplitude": 34.045, "phase_angle": 29.682, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 161.092, 227.047, 182.346 ], "x_axis": [ 0.256, -0.919, 0.299 ], "y_axis": [ 0.659, 0.392, 0.642 ], "z_axis": [ -0.707, 0.033, 0.706 ], "quaternion": [ 0.767, 0.199, -0.328, -0.514 ] } }, { "index": 215, "index_chain": 215, "chain_name": "A", "nt_resnum": 217, "nt_name": "G", "nt_code": "G", "nt_id": "///A/217", "linked_nts": [ "///A/216", "///A/218" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,junction-loop,A-minor", "alpha": -55.968, "beta": -178.597, "gamma": 34.159, "delta": 86.909, "epsilon": 167.163, "zeta": -81.620, "epsilon_zeta": -111.217, "bb_type": "BI", "chi": -141.733, "glyco_bond": "anti", "C5prime_xyz": [ -1.012, 8.642, -0.417 ], "P_xyz": [ 1.491, 9.024, 0.248 ], "form": ".", "ssZp": 3.651, "Dp": 4.054, "splay_angle": 19.450, "splay_distance": 3.165, "splay_ratio": 0.169, "d22": null, "d64": null, "eta": 163.106, "theta": -150.566, "eta_prime": -178.134, "theta_prime": -148.859, "eta_base": -121.930, "theta_base": -139.571, "v0": 4.600, "v1": -22.971, "v2": 31.594, "v3": -29.901, "v4": 16.043, "amplitude": 32.153, "phase_angle": 10.700, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.382, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 158.755, 225.962, 184.224 ], "x_axis": [ 0.654, -0.324, 0.684 ], "y_axis": [ 0.168, 0.943, 0.287 ], "z_axis": [ -0.738, -0.072, 0.671 ], "quaternion": [ 0.904, 0.099, -0.393, -0.136 ] } }, { "index": 216, "index_chain": 216, "chain_name": "A", "nt_resnum": 218, "nt_name": "G", "nt_code": "G", "nt_id": "///A/218", "linked_nts": [ "///A/217", "///A/219" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-donor", "alpha": 167.586, "beta": -144.950, "gamma": 171.010, "delta": 151.960, "epsilon": -62.461, "zeta": 93.349, "epsilon_zeta": 204.190, "bb_type": "--", "chi": -140.409, "glyco_bond": "anti", "C5prime_xyz": [ -1.702, 8.717, -0.000 ], "P_xyz": [ 0.700, 9.220, -0.928 ], "form": ".", "ssZp": -0.248, "Dp": 0.155, "splay_angle": 55.789, "splay_distance": 9.840, "splay_ratio": 0.470, "d22": null, "d64": null, "eta": -101.402, "theta": 111.123, "eta_prime": -118.000, "theta_prime": 116.368, "eta_base": -115.512, "theta_base": 117.585, "v0": -20.393, "v1": 36.937, "v2": -38.414, "v3": 27.653, "v4": -4.789, "amplitude": 39.256, "phase_angle": 168.112, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.337, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 155.930, 225.162, 185.405 ], "x_axis": [ 0.693, 0.035, 0.720 ], "y_axis": [ -0.203, 0.968, 0.148 ], "z_axis": [ -0.692, -0.249, 0.678 ], "quaternion": [ 0.914, 0.109, -0.386, 0.065 ] } }, { "index": 217, "index_chain": 217, "chain_name": "A", "nt_resnum": 219, "nt_name": "A", "nt_code": "A", "nt_id": "///A/219", "linked_nts": [ "///A/218", "///A/220" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop", "alpha": 67.519, "beta": -109.644, "gamma": -108.691, "delta": 81.532, "epsilon": -146.724, "zeta": -67.196, "epsilon_zeta": -79.528, "bb_type": "BI", "chi": -179.229, "glyco_bond": "anti", "C5prime_xyz": [ -1.261, 8.314, 1.615 ], "P_xyz": [ -1.611, 10.857, 1.094 ], "form": "A", "ssZp": 4.749, "Dp": 4.716, "splay_angle": 28.306, "splay_distance": 4.130, "splay_ratio": 0.246, "d22": null, "d64": null, "eta": -88.185, "theta": 159.743, "eta_prime": -111.369, "theta_prime": -178.995, "eta_base": -105.850, "theta_base": -127.897, "v0": 5.585, "v1": -27.579, "v2": 37.843, "v3": -35.631, "v4": 18.964, "amplitude": 38.478, "phase_angle": 10.426, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 156.905, 226.567, 175.714 ], "x_axis": [ -0.631, -0.124, -0.766 ], "y_axis": [ -0.721, 0.459, 0.520 ], "z_axis": [ 0.287, 0.880, -0.379 ], "quaternion": [ 0.335, -0.269, 0.786, 0.445 ] } }, { "index": 218, "index_chain": 218, "chain_name": "A", "nt_resnum": 220, "nt_name": "A", "nt_code": "A", "nt_id": "///A/220", "linked_nts": [ "///A/219", "///A/221" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop", "alpha": -80.203, "beta": 171.643, "gamma": 72.013, "delta": 85.267, "epsilon": -128.050, "zeta": -78.115, "epsilon_zeta": -49.936, "bb_type": "--", "chi": 177.987, "glyco_bond": "anti", "C5prime_xyz": [ -1.263, 8.185, 1.820 ], "P_xyz": [ 1.347, 8.254, 2.042 ], "form": ".", "ssZp": 4.738, "Dp": 4.748, "splay_angle": 26.208, "splay_distance": 3.883, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 172.971, "theta": -130.466, "eta_prime": -169.807, "theta_prime": -128.912, "eta_base": -113.330, "theta_base": -82.822, "v0": 6.635, "v1": -26.825, "v2": 35.641, "v3": -32.786, "v4": 16.558, "amplitude": 36.012, "phase_angle": 8.240, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.401, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 157.512, 229.004, 172.437 ], "x_axis": [ -0.960, 0.224, -0.169 ], "y_axis": [ -0.090, 0.322, 0.942 ], "z_axis": [ 0.266, 0.920, -0.289 ], "quaternion": [ 0.136, 0.042, 0.802, 0.581 ] } }, { "index": 219, "index_chain": 219, "chain_name": "A", "nt_resnum": 221, "nt_name": "G", "nt_code": "G", "nt_id": "///A/221", "linked_nts": [ "///A/220", "///A/222" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -65.214, "beta": 156.407, "gamma": 62.222, "delta": 87.488, "epsilon": -137.379, "zeta": -66.998, "epsilon_zeta": -70.381, "bb_type": "BI", "chi": -177.656, "glyco_bond": "anti", "C5prime_xyz": [ -1.274, 8.381, 1.592 ], "P_xyz": [ 1.340, 8.290, 1.778 ], "form": ".", "ssZp": 4.566, "Dp": 4.610, "splay_angle": 25.133, "splay_distance": 3.844, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 163.930, "theta": -122.624, "eta_prime": -173.248, "theta_prime": -124.386, "eta_base": -103.580, "theta_base": -81.245, "v0": 4.158, "v1": -23.375, "v2": 32.565, "v3": -31.105, "v4": 17.060, "amplitude": 33.248, "phase_angle": 11.633, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.599, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 156.383, 232.426, 170.989 ], "x_axis": [ -0.688, 0.351, 0.635 ], "y_axis": [ 0.679, 0.002, 0.734 ], "z_axis": [ 0.256, 0.936, -0.240 ], "quaternion": [ -0.136, 0.371, 0.695, 0.601 ] } }, { "index": 220, "index_chain": 220, "chain_name": "A", "nt_resnum": 222, "nt_name": "A", "nt_code": "A", "nt_id": "///A/222", "linked_nts": [ "///A/221", "///A/223" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,ribose-zipper", "alpha": -74.054, "beta": 173.089, "gamma": 56.826, "delta": 88.090, "epsilon": -119.814, "zeta": -104.002, "epsilon_zeta": -15.812, "bb_type": "--", "chi": -162.932, "glyco_bond": "anti", "C5prime_xyz": [ -1.234, 8.555, 0.777 ], "P_xyz": [ 1.360, 8.664, 1.133 ], "form": ".", "ssZp": 4.287, "Dp": 4.628, "splay_angle": 26.371, "splay_distance": 4.151, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": 167.963, "theta": -140.354, "eta_prime": -172.256, "theta_prime": -134.792, "eta_base": -108.918, "theta_base": -94.103, "v0": 3.596, "v1": -22.524, "v2": 31.775, "v3": -30.620, "v4": 17.097, "amplitude": 32.541, "phase_angle": 12.453, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.746, "filter_rmsd": 0.040, "frame": { "rmsd": 0.012, "origin": [ 155.820, 236.195, 171.499 ], "x_axis": [ 0.079, 0.154, 0.985 ], "y_axis": [ 0.969, -0.242, -0.039 ], "z_axis": [ 0.232, 0.958, -0.168 ], "quaternion": [ -0.409, 0.610, 0.460, 0.499 ] } }, { "index": 221, "index_chain": 221, "chain_name": "A", "nt_resnum": 223, "nt_name": "G", "nt_code": "G", "nt_id": "///A/223", "linked_nts": [ "///A/222", "///A/224" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,ribose-zipper", "alpha": -40.781, "beta": 135.907, "gamma": 50.636, "delta": 82.977, "epsilon": -118.059, "zeta": -137.984, "epsilon_zeta": 19.926, "bb_type": "--", "chi": -156.861, "glyco_bond": "anti", "C5prime_xyz": [ -1.160, 8.715, 0.353 ], "P_xyz": [ 1.376, 8.426, -0.172 ], "form": ".", "ssZp": 4.114, "Dp": 4.734, "splay_angle": 56.061, "splay_distance": 8.820, "splay_ratio": 0.470, "d22": null, "d64": null, "eta": 171.838, "theta": 178.877, "eta_prime": -171.481, "theta_prime": -172.626, "eta_base": -120.297, "theta_base": 144.087, "v0": 3.326, "v1": -24.750, "v2": 35.611, "v3": -34.711, "v4": 19.823, "amplitude": 36.634, "phase_angle": 13.572, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.616, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 157.324, 239.972, 172.333 ], "x_axis": [ 0.698, -0.065, 0.713 ], "y_axis": [ 0.690, -0.208, -0.694 ], "z_axis": [ 0.193, 0.976, -0.100 ], "quaternion": [ 0.590, -0.708, -0.220, -0.320 ] } }, { "index": 222, "index_chain": 222, "chain_name": "A", "nt_resnum": 224, "nt_name": "A", "nt_code": "A", "nt_id": "///A/224", "linked_nts": [ "///A/223", "///A/225" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop", "alpha": -53.718, "beta": 161.063, "gamma": 34.438, "delta": 143.642, "epsilon": -86.584, "zeta": 73.306, "epsilon_zeta": 200.110, "bb_type": "--", "chi": -87.782, "glyco_bond": "anti", "C5prime_xyz": [ -2.853, 7.603, -2.574 ], "P_xyz": [ -0.624, 8.806, -3.195 ], "form": ".", "ssZp": 0.424, "Dp": 0.602, "splay_angle": 73.890, "splay_distance": 11.842, "splay_ratio": 0.601, "d22": null, "d64": null, "eta": -164.207, "theta": 77.171, "eta_prime": -166.021, "theta_prime": 64.387, "eta_base": 149.165, "theta_base": 94.375, "v0": -24.756, "v1": 37.555, "v2": -35.280, "v3": 21.917, "v4": 1.523, "amplitude": 37.817, "phase_angle": 158.891, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 152.830, 243.142, 165.438 ], "x_axis": [ -0.020, -0.369, 0.929 ], "y_axis": [ 0.969, 0.222, 0.109 ], "z_axis": [ -0.246, 0.903, 0.353 ], "quaternion": [ 0.624, -0.318, -0.471, -0.536 ] } }, { "index": 223, "index_chain": 223, "chain_name": "A", "nt_resnum": 225, "nt_name": "A", "nt_code": "A", "nt_id": "///A/225", "linked_nts": [ "///A/224", "///A/226" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart", "alpha": -162.399, "beta": 135.252, "gamma": -164.935, "delta": 148.041, "epsilon": -121.797, "zeta": -98.607, "epsilon_zeta": -23.190, "bb_type": "--", "chi": -66.462, "glyco_bond": "--", "C5prime_xyz": [ -3.273, 6.738, -3.020 ], "P_xyz": [ -4.424, 6.612, -5.369 ], "form": ".", "ssZp": 0.740, "Dp": 1.373, "splay_angle": 132.645, "splay_distance": 19.192, "splay_ratio": 0.916, "d22": null, "d64": null, "eta": -96.931, "theta": -119.893, "eta_prime": -107.219, "theta_prime": -122.913, "eta_base": -126.248, "theta_base": -122.444, "v0": -22.693, "v1": 37.176, "v2": -36.638, "v3": 24.455, "v4": -1.306, "amplitude": 38.277, "phase_angle": 163.170, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 157.228, 241.251, 154.606 ], "x_axis": [ -0.216, 0.342, -0.914 ], "y_axis": [ 0.819, 0.573, 0.021 ], "z_axis": [ 0.532, -0.744, -0.404 ], "quaternion": [ 0.488, 0.392, 0.741, -0.244 ] } }, { "index": 224, "index_chain": 224, "chain_name": "A", "nt_resnum": 226, "nt_name": "A", "nt_code": "A", "nt_id": "///A/226", "linked_nts": [ "///A/225", "///A/227" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-pair-contact,junction-loop,A-minor,cap-acceptor,splayed-apart", "alpha": 129.550, "beta": -132.029, "gamma": -81.236, "delta": 144.017, "epsilon": -158.894, "zeta": 72.278, "epsilon_zeta": 128.828, "bb_type": "--", "chi": 132.692, "glyco_bond": "--", "C5prime_xyz": [ -3.426, 6.894, 2.975 ], "P_xyz": [ -3.998, 8.742, 4.749 ], "form": ".", "ssZp": -1.056, "Dp": 2.047, "splay_angle": 144.324, "splay_distance": 18.186, "splay_ratio": 0.952, "d22": null, "d64": null, "eta": -86.284, "theta": 15.490, "eta_prime": -56.351, "theta_prime": 33.103, "eta_base": -30.664, "theta_base": 74.910, "v0": -25.303, "v1": 38.001, "v2": -35.395, "v3": 21.722, "v4": 2.041, "amplitude": 38.127, "phase_angle": 158.176, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.047, "frame": { "rmsd": 0.016, "origin": [ 175.554, 246.832, 155.761 ], "x_axis": [ 0.142, 0.987, 0.082 ], "y_axis": [ -0.985, 0.149, -0.090 ], "z_axis": [ -0.101, -0.068, 0.993 ], "quaternion": [ 0.755, -0.007, -0.060, 0.652 ] } }, { "index": 225, "index_chain": 225, "chain_name": "A", "nt_resnum": 227, "nt_name": "G", "nt_code": "G", "nt_id": "///A/227", "linked_nts": [ "///A/226", "///A/228" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate,splayed-apart", "alpha": 42.874, "beta": 143.292, "gamma": -49.070, "delta": 87.357, "epsilon": 178.969, "zeta": -75.636, "epsilon_zeta": -105.395, "bb_type": "BI", "chi": -156.764, "glyco_bond": "anti", "C5prime_xyz": [ -0.753, 8.527, 0.371 ], "P_xyz": [ 0.980, 9.586, 2.028 ], "form": "A", "ssZp": 4.284, "Dp": 4.387, "splay_angle": 23.154, "splay_distance": 3.777, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": -174.151, "theta": -153.402, "eta_prime": -175.059, "theta_prime": -148.871, "eta_base": 169.728, "theta_base": -122.186, "v0": 9.258, "v1": -28.248, "v2": 35.487, "v3": -31.029, "v4": 13.838, "amplitude": 35.567, "phase_angle": 3.856, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 158.942, 241.769, 150.364 ], "x_axis": [ 0.271, 0.863, -0.426 ], "y_axis": [ 0.845, -0.001, 0.535 ], "z_axis": [ 0.462, -0.505, -0.729 ], "quaternion": [ 0.368, 0.707, 0.604, 0.013 ] } }, { "index": 226, "index_chain": 226, "chain_name": "A", "nt_resnum": 228, "nt_name": "C", "nt_code": "C", "nt_id": "///A/228", "linked_nts": [ "///A/227", "///A/229" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop", "alpha": 159.996, "beta": -142.642, "gamma": 165.564, "delta": 81.299, "epsilon": -115.595, "zeta": -47.213, "epsilon_zeta": -68.382, "bb_type": "--", "chi": 175.268, "glyco_bond": "anti", "C5prime_xyz": [ -1.406, 8.326, 1.937 ], "P_xyz": [ 0.769, 9.508, 1.109 ], "form": ".", "ssZp": 4.669, "Dp": 4.699, "splay_angle": 33.471, "splay_distance": 5.610, "splay_ratio": 0.296, "d22": null, "d64": null, "eta": 172.490, "theta": -117.857, "eta_prime": -171.198, "theta_prime": -121.183, "eta_base": -135.104, "theta_base": -89.854, "v0": 2.520, "v1": -24.228, "v2": 35.615, "v3": -35.119, "v4": 20.501, "amplitude": 36.830, "phase_angle": 14.757, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.470, "filter_rmsd": 0.067, "frame": { "rmsd": 0.008, "origin": [ 158.954, 240.495, 146.808 ], "x_axis": [ 0.633, 0.747, -0.203 ], "y_axis": [ 0.643, -0.362, 0.675 ], "z_axis": [ 0.430, -0.558, -0.710 ], "quaternion": [ 0.375, 0.822, 0.423, 0.069 ] } }, { "index": 227, "index_chain": 227, "chain_name": "A", "nt_resnum": 229, "nt_name": "A", "nt_code": "A", "nt_id": "///A/229", "linked_nts": [ "///A/228", "///A/230" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor", "alpha": -111.155, "beta": 139.722, "gamma": 130.534, "delta": 83.166, "epsilon": -152.025, "zeta": -70.016, "epsilon_zeta": -82.009, "bb_type": "BI", "chi": 167.431, "glyco_bond": "anti", "C5prime_xyz": [ -2.076, 8.207, 2.200 ], "P_xyz": [ -0.267, 10.012, 1.684 ], "form": ".", "ssZp": 4.008, "Dp": 4.346, "splay_angle": 24.312, "splay_distance": 3.792, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 172.255, "theta": -141.695, "eta_prime": -158.956, "theta_prime": -140.175, "eta_base": -97.846, "theta_base": -82.657, "v0": -5.121, "v1": -16.050, "v2": 29.791, "v3": -33.655, "v4": 24.448, "amplitude": 33.502, "phase_angle": 27.226, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 162.761, 241.145, 142.739 ], "x_axis": [ 0.874, 0.314, 0.370 ], "y_axis": [ -0.041, -0.712, 0.701 ], "z_axis": [ 0.484, -0.628, -0.609 ], "quaternion": [ 0.372, 0.894, 0.077, 0.239 ] } }, { "index": 228, "index_chain": 228, "chain_name": "A", "nt_resnum": 230, "nt_name": "A", "nt_code": "A", "nt_id": "///A/230", "linked_nts": [ "///A/229", "///A/231" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-acceptor", "alpha": 175.001, "beta": -165.256, "gamma": 160.553, "delta": 145.640, "epsilon": -32.713, "zeta": -154.159, "epsilon_zeta": 121.446, "bb_type": "--", "chi": -159.804, "glyco_bond": "anti", "C5prime_xyz": [ -1.493, 8.431, 1.007 ], "P_xyz": [ 0.986, 9.133, 0.570 ], "form": ".", "ssZp": -0.010, "Dp": 0.569, "splay_angle": 61.667, "splay_distance": 8.779, "splay_ratio": 0.549, "d22": null, "d64": null, "eta": -114.995, "theta": 60.656, "eta_prime": -122.350, "theta_prime": 76.559, "eta_base": -62.147, "theta_base": 82.589, "v0": -15.489, "v1": 30.000, "v2": -32.118, "v3": 24.039, "v4": -5.559, "amplitude": 32.530, "phase_angle": 170.867, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.484, "filter_rmsd": 0.037, "frame": { "rmsd": 0.007, "origin": [ 166.167, 239.898, 141.635 ], "x_axis": [ 0.437, -0.464, 0.770 ], "y_axis": [ -0.751, -0.660, 0.029 ], "z_axis": [ 0.495, -0.591, -0.637 ], "quaternion": [ 0.187, 0.827, -0.368, 0.383 ] } }, { "index": 229, "index_chain": 229, "chain_name": "A", "nt_resnum": 231, "nt_name": "A", "nt_code": "A", "nt_id": "///A/231", "linked_nts": [ "///A/230", "///A/232" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,phosphate", "alpha": -118.810, "beta": -76.242, "gamma": 140.799, "delta": 82.986, "epsilon": 36.817, "zeta": 155.423, "epsilon_zeta": -118.606, "bb_type": "--", "chi": 94.558, "glyco_bond": "--", "C5prime_xyz": [ -3.813, 4.847, 3.216 ], "P_xyz": [ -1.221, 4.846, 3.635 ], "form": ".", "ssZp": 0.870, "Dp": 3.071, "splay_angle": 61.135, "splay_distance": 9.419, "splay_ratio": 0.511, "d22": null, "d64": null, "eta": 128.338, "theta": -131.075, "eta_prime": 123.617, "theta_prime": -130.286, "eta_base": 135.554, "theta_base": -154.255, "v0": 8.972, "v1": -28.184, "v2": 35.865, "v3": -31.585, "v4": 14.319, "amplitude": 35.977, "phase_angle": 4.531, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.048, "frame": { "rmsd": 0.018, "origin": [ 157.506, 240.095, 143.054 ], "x_axis": [ 0.408, -0.669, 0.621 ], "y_axis": [ -0.461, -0.738, -0.493 ], "z_axis": [ 0.788, -0.085, -0.610 ], "quaternion": [ -0.123, 0.830, -0.340, 0.424 ] } }, { "index": 230, "index_chain": 230, "chain_name": "A", "nt_resnum": 232, "nt_name": "U", "nt_code": "U", "nt_id": "///A/232", "linked_nts": [ "///A/231", "///A/233" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate", "alpha": -94.818, "beta": 75.161, "gamma": 154.241, "delta": 143.385, "epsilon": 15.044, "zeta": 73.686, "epsilon_zeta": -58.642, "bb_type": "--", "chi": -143.308, "glyco_bond": "anti", "C5prime_xyz": [ -1.997, 8.718, 0.032 ], "P_xyz": [ -1.146, 9.357, -2.372 ], "form": ".", "ssZp": -0.856, "Dp": 1.160, "splay_angle": 67.380, "splay_distance": 11.376, "splay_ratio": 0.566, "d22": null, "d64": null, "eta": -15.348, "theta": 60.951, "eta_prime": -42.726, "theta_prime": 98.162, "eta_base": -76.635, "theta_base": 93.295, "v0": -22.245, "v1": 35.705, "v2": -34.785, "v3": 22.929, "v4": -0.675, "amplitude": 36.531, "phase_angle": 162.213, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 153.639, 248.486, 141.219 ], "x_axis": [ 0.557, 0.539, -0.632 ], "y_axis": [ -0.211, -0.644, -0.735 ], "z_axis": [ -0.803, 0.543, -0.245 ], "quaternion": [ -0.409, 0.782, 0.105, -0.459 ] } }, { "index": 231, "index_chain": 231, "chain_name": "A", "nt_resnum": 233, "nt_name": "G", "nt_code": "G", "nt_id": "///A/233", "linked_nts": [ "///A/232", "///A/234" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,cap-donor,phosphate", "alpha": -146.022, "beta": -91.125, "gamma": -70.338, "delta": 79.180, "epsilon": 172.630, "zeta": -80.372, "epsilon_zeta": -106.998, "bb_type": "BI", "chi": -131.809, "glyco_bond": "anti", "C5prime_xyz": [ -2.072, 8.622, -1.227 ], "P_xyz": [ -3.643, 10.727, -1.381 ], "form": "A", "ssZp": 3.514, "Dp": 4.299, "splay_angle": 23.614, "splay_distance": 4.045, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 126.008, "theta": 141.412, "eta_prime": 88.571, "theta_prime": 158.125, "eta_base": 72.593, "theta_base": -175.751, "v0": -1.870, "v1": -22.167, "v2": 36.286, "v3": -38.309, "v4": 25.309, "amplitude": 38.920, "phase_angle": 21.202, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.019, "frame": { "rmsd": 0.019, "origin": [ 159.147, 240.207, 146.745 ], "x_axis": [ 0.535, 0.833, -0.139 ], "y_axis": [ -0.743, 0.386, -0.546 ], "z_axis": [ -0.401, 0.396, 0.826 ], "quaternion": [ 0.829, -0.284, -0.079, 0.476 ] } }, { "index": 232, "index_chain": 232, "chain_name": "A", "nt_resnum": 234, "nt_name": "C", "nt_code": "C", "nt_id": "///A/234", "linked_nts": [ "///A/233", "///A/235" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop", "alpha": 152.756, "beta": -145.791, "gamma": -179.016, "delta": 82.591, "epsilon": -114.506, "zeta": -78.797, "epsilon_zeta": -35.710, "bb_type": "--", "chi": -163.150, "glyco_bond": "anti", "C5prime_xyz": [ -1.270, 8.724, 0.716 ], "P_xyz": [ 0.157, 10.041, -1.055 ], "form": ".", "ssZp": 4.309, "Dp": 4.706, "splay_angle": 35.169, "splay_distance": 5.438, "splay_ratio": 0.306, "d22": null, "d64": null, "eta": -177.335, "theta": -144.774, "eta_prime": -170.558, "theta_prime": -129.687, "eta_base": -143.025, "theta_base": -70.376, "v0": 2.279, "v1": -23.787, "v2": 35.051, "v3": -34.681, "v4": 20.440, "amplitude": 36.301, "phase_angle": 15.074, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.565, "filter_rmsd": 0.062, "frame": { "rmsd": 0.006, "origin": [ 159.152, 241.995, 150.373 ], "x_axis": [ 0.224, 0.925, -0.307 ], "y_axis": [ -0.917, 0.094, -0.387 ], "z_axis": [ -0.329, 0.368, 0.870 ], "quaternion": [ 0.740, -0.255, -0.008, 0.623 ] } }, { "index": 233, "index_chain": 233, "chain_name": "A", "nt_resnum": 235, "nt_name": "G", "nt_code": "G", "nt_id": "///A/235", "linked_nts": [ "///A/234", "///A/236" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart", "alpha": -49.311, "beta": 154.533, "gamma": 70.999, "delta": 147.429, "epsilon": -96.666, "zeta": 172.307, "epsilon_zeta": 91.027, "bb_type": "BII", "chi": -116.931, "glyco_bond": "anti", "C5prime_xyz": [ -1.610, 8.434, -1.327 ], "P_xyz": [ 1.000, 8.264, -1.482 ], "form": ".", "ssZp": 0.758, "Dp": 1.074, "splay_angle": 152.014, "splay_distance": 18.814, "splay_ratio": 0.970, "d22": null, "d64": null, "eta": -165.571, "theta": -157.364, "eta_prime": -122.246, "theta_prime": -171.956, "eta_base": -64.056, "theta_base": -157.541, "v0": -17.273, "v1": 31.980, "v2": -33.707, "v3": 24.584, "v4": -4.789, "amplitude": 34.320, "phase_angle": 169.152, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.332, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 156.545, 246.725, 149.737 ], "x_axis": [ -0.629, 0.341, -0.699 ], "y_axis": [ -0.756, -0.481, 0.445 ], "z_axis": [ -0.184, 0.808, 0.560 ], "quaternion": [ 0.336, -0.270, 0.383, 0.817 ] } }, { "index": 234, "index_chain": 234, "chain_name": "A", "nt_resnum": 236, "nt_name": "A", "nt_code": "A", "nt_id": "///A/236", "linked_nts": [ "///A/235", "///A/237" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,ribose-zipper,splayed-apart", "alpha": 43.280, "beta": 150.582, "gamma": 27.898, "delta": 77.547, "epsilon": -160.840, "zeta": -66.089, "epsilon_zeta": -94.750, "bb_type": "BI", "chi": -164.904, "glyco_bond": "anti", "C5prime_xyz": [ -1.386, 8.620, 0.758 ], "P_xyz": [ 1.191, 8.881, 1.078 ], "form": ".", "ssZp": 4.555, "Dp": 4.619, "splay_angle": 33.564, "splay_distance": 5.528, "splay_ratio": 0.301, "d22": null, "d64": null, "eta": -89.177, "theta": -118.118, "eta_prime": -93.688, "theta_prime": -122.592, "eta_base": -81.650, "theta_base": -97.521, "v0": 3.632, "v1": -27.284, "v2": 39.402, "v3": -38.332, "v4": 21.860, "amplitude": 40.534, "phase_angle": 13.572, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.013, "origin": [ 153.252, 239.394, 166.748 ], "x_axis": [ -0.959, -0.214, -0.185 ], "y_axis": [ 0.102, 0.349, -0.932 ], "z_axis": [ 0.264, -0.912, -0.313 ], "quaternion": [ 0.139, -0.035, 0.809, -0.569 ] } }, { "index": 235, "index_chain": 235, "chain_name": "A", "nt_resnum": 237, "nt_name": "U", "nt_code": "U", "nt_id": "///A/237", "linked_nts": [ "///A/236", "///A/238" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper", "alpha": 161.765, "beta": -158.812, "gamma": 179.582, "delta": 81.723, "epsilon": -124.942, "zeta": -67.519, "epsilon_zeta": -57.424, "bb_type": "--", "chi": 175.582, "glyco_bond": "anti", "C5prime_xyz": [ -1.140, 8.111, 1.946 ], "P_xyz": [ 0.578, 9.914, 1.156 ], "form": ".", "ssZp": 4.846, "Dp": 4.819, "splay_angle": 30.710, "splay_distance": 4.766, "splay_ratio": 0.271, "d22": 3.767, "d64": 4.297, "eta": 176.363, "theta": -145.886, "eta_prime": -164.172, "theta_prime": -138.989, "eta_base": -112.833, "theta_base": -95.077, "v0": 7.461, "v1": -28.880, "v2": 38.282, "v3": -34.940, "v4": 17.313, "amplitude": 38.630, "phase_angle": 7.692, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.908, "filter_rmsd": 0.105, "frame": { "rmsd": 0.007, "origin": [ 150.773, 234.490, 166.146 ], "x_axis": [ -0.645, 0.022, -0.764 ], "y_axis": [ 0.684, 0.462, -0.565 ], "z_axis": [ 0.340, -0.887, -0.313 ], "quaternion": [ 0.355, 0.227, 0.778, -0.467 ] } }, { "index": 236, "index_chain": 236, "chain_name": "A", "nt_resnum": 238, "nt_name": "U", "nt_code": "U", "nt_id": "///A/238", "linked_nts": [ "///A/237", "///A/239" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -49.830, "beta": 167.423, "gamma": 49.703, "delta": 79.219, "epsilon": -151.258, "zeta": -96.068, "epsilon_zeta": -55.190, "bb_type": "BI", "chi": -171.220, "glyco_bond": "anti", "C5prime_xyz": [ -1.549, 8.644, 1.168 ], "P_xyz": [ 0.945, 9.099, 1.759 ], "form": "A", "ssZp": 4.540, "Dp": 4.573, "splay_angle": 19.551, "splay_distance": 3.191, "splay_ratio": 0.175, "d22": 4.162, "d64": 4.103, "eta": 167.068, "theta": -133.523, "eta_prime": -167.532, "theta_prime": -140.990, "eta_base": -103.363, "theta_base": -110.280, "v0": -0.360, "v1": -22.755, "v2": 35.985, "v3": -37.230, "v4": 23.694, "amplitude": 38.101, "phase_angle": 19.182, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.592, "filter_rmsd": 0.100, "frame": { "rmsd": 0.008, "origin": [ 149.338, 231.287, 162.922 ], "x_axis": [ 0.097, 0.399, -0.912 ], "y_axis": [ 0.925, 0.303, 0.230 ], "z_axis": [ 0.368, -0.865, -0.340 ], "quaternion": [ 0.515, 0.532, 0.622, -0.255 ] } }, { "index": 237, "index_chain": 237, "chain_name": "A", "nt_resnum": 239, "nt_name": "C", "nt_code": "C", "nt_id": "///A/239", "linked_nts": [ "///A/238", "///A/240" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 152.156, "beta": -144.486, "gamma": 166.278, "delta": 81.366, "epsilon": -132.062, "zeta": -83.091, "epsilon_zeta": -48.971, "bb_type": "BI", "chi": 178.056, "glyco_bond": "anti", "C5prime_xyz": [ -1.125, 8.281, 1.819 ], "P_xyz": [ 0.960, 9.424, 0.759 ], "form": "A", "ssZp": 4.747, "Dp": 4.749, "splay_angle": 25.764, "splay_distance": 4.078, "splay_ratio": 0.228, "d22": 4.598, "d64": 4.921, "eta": 153.934, "theta": -154.879, "eta_prime": 170.669, "theta_prime": -156.028, "eta_base": -137.977, "theta_base": -138.708, "v0": 5.462, "v1": -27.066, "v2": 37.308, "v3": -35.188, "v4": 18.769, "amplitude": 37.952, "phase_angle": 10.571, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.356, "filter_rmsd": 0.065, "frame": { "rmsd": 0.006, "origin": [ 148.991, 229.082, 160.641 ], "x_axis": [ 0.595, 0.569, -0.568 ], "y_axis": [ 0.738, -0.108, 0.666 ], "z_axis": [ 0.317, -0.815, -0.484 ], "quaternion": [ 0.501, 0.740, 0.442, -0.085 ] } }, { "index": 238, "index_chain": 238, "chain_name": "A", "nt_resnum": 240, "nt_name": "C", "nt_code": "C", "nt_id": "///A/240", "linked_nts": [ "///A/239", "///A/241" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper", "alpha": -45.868, "beta": 169.657, "gamma": 39.881, "delta": 78.674, "epsilon": -142.325, "zeta": -76.400, "epsilon_zeta": -65.925, "bb_type": "BI", "chi": -172.641, "glyco_bond": "anti", "C5prime_xyz": [ -1.429, 8.650, 1.247 ], "P_xyz": [ 0.995, 9.088, 2.101 ], "form": "A", "ssZp": 4.637, "Dp": 4.667, "splay_angle": 20.223, "splay_distance": 3.276, "splay_ratio": 0.181, "d22": 4.396, "d64": 4.206, "eta": 169.699, "theta": -147.400, "eta_prime": -178.931, "theta_prime": -142.615, "eta_base": -147.808, "theta_base": -119.297, "v0": 0.655, "v1": -23.958, "v2": 36.876, "v3": -37.522, "v4": 23.263, "amplitude": 38.704, "phase_angle": 17.678, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.461, "filter_rmsd": 0.060, "frame": { "rmsd": 0.009, "origin": [ 148.449, 226.743, 157.345 ], "x_axis": [ 0.825, 0.558, -0.093 ], "y_axis": [ 0.324, -0.331, 0.886 ], "z_axis": [ 0.464, -0.761, -0.454 ], "quaternion": [ 0.510, 0.808, 0.273, 0.115 ] } }, { "index": 239, "index_chain": 239, "chain_name": "A", "nt_resnum": 241, "nt_name": "C", "nt_code": "C", "nt_id": "///A/241", "linked_nts": [ "///A/240", "///A/242" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor,ribose-zipper", "alpha": -63.741, "beta": -179.926, "gamma": 47.813, "delta": 84.642, "epsilon": -173.029, "zeta": -70.649, "epsilon_zeta": -102.380, "bb_type": "BI", "chi": -155.533, "glyco_bond": "anti", "C5prime_xyz": [ -1.397, 8.807, 0.256 ], "P_xyz": [ 1.090, 9.360, 0.825 ], "form": ".", "ssZp": 4.105, "Dp": 4.277, "splay_angle": 17.980, "splay_distance": 2.921, "splay_ratio": 0.157, "d22": 3.963, "d64": 3.441, "eta": 166.228, "theta": -127.264, "eta_prime": 179.843, "theta_prime": -131.950, "eta_base": -146.400, "theta_base": -87.800, "v0": -1.104, "v1": -19.736, "v2": 31.794, "v3": -33.356, "v4": 21.774, "amplitude": 33.934, "phase_angle": 20.455, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.891, "filter_rmsd": 0.060, "frame": { "rmsd": 0.009, "origin": [ 149.656, 225.689, 154.488 ], "x_axis": [ 0.725, 0.450, 0.521 ], "y_axis": [ -0.090, -0.688, 0.720 ], "z_axis": [ 0.683, -0.569, -0.459 ], "quaternion": [ 0.380, 0.847, 0.106, 0.355 ] } }, { "index": 240, "index_chain": 240, "chain_name": "A", "nt_resnum": 242, "nt_name": "U", "nt_code": "U", "nt_id": "///A/242", "linked_nts": [ "///A/241", "///A/243" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": 176.758, "beta": -146.816, "gamma": 140.224, "delta": 82.906, "epsilon": -119.253, "zeta": -94.520, "epsilon_zeta": -24.733, "bb_type": "--", "chi": -155.339, "glyco_bond": "anti", "C5prime_xyz": [ -1.639, 8.816, 0.232 ], "P_xyz": [ 0.581, 9.380, -1.026 ], "form": ".", "ssZp": 3.902, "Dp": 4.511, "splay_angle": 29.327, "splay_distance": 4.737, "splay_ratio": 0.257, "d22": null, "d64": null, "eta": 160.267, "theta": -144.795, "eta_prime": -178.970, "theta_prime": -142.295, "eta_base": -119.183, "theta_base": -96.611, "v0": -3.081, "v1": -18.424, "v2": 31.626, "v3": -34.314, "v4": 23.554, "amplitude": 34.513, "phase_angle": 23.600, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.009, "origin": [ 152.547, 225.371, 154.217 ], "x_axis": [ 0.463, -0.057, 0.885 ], "y_axis": [ -0.290, -0.953, 0.090 ], "z_axis": [ 0.838, -0.299, -0.457 ], "quaternion": [ 0.115, 0.847, -0.103, 0.508 ] } }, { "index": 241, "index_chain": 241, "chain_name": "A", "nt_resnum": 243, "nt_name": "G", "nt_code": "G", "nt_id": "///A/243", "linked_nts": [ "///A/242", "///A/244" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -50.064, "beta": 139.309, "gamma": 61.061, "delta": 82.755, "epsilon": -131.101, "zeta": 47.071, "epsilon_zeta": 181.828, "bb_type": "--", "chi": -147.706, "glyco_bond": "anti", "C5prime_xyz": [ -1.383, 8.757, -0.243 ], "P_xyz": [ 1.002, 8.621, -1.296 ], "form": ".", "ssZp": 3.847, "Dp": 4.698, "splay_angle": 25.021, "splay_distance": 4.013, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 167.449, "theta": -11.254, "eta_prime": -171.028, "theta_prime": -58.182, "eta_base": -112.831, "theta_base": -103.172, "v0": 1.504, "v1": -23.367, "v2": 35.070, "v3": -35.185, "v4": 21.286, "amplitude": 36.542, "phase_angle": 16.319, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.931, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 156.377, 222.674, 154.925 ], "x_axis": [ 0.085, -0.719, 0.690 ], "y_axis": [ -0.379, -0.664, -0.645 ], "z_axis": [ 0.922, -0.207, -0.328 ], "quaternion": [ -0.152, 0.721, -0.381, 0.559 ] } }, { "index": 242, "index_chain": 242, "chain_name": "A", "nt_resnum": 244, "nt_name": "A", "nt_code": "A", "nt_id": "///A/244", "linked_nts": [ "///A/243", "///A/245" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 169.700, "beta": 131.762, "gamma": 61.727, "delta": 145.479, "epsilon": -124.491, "zeta": 131.409, "epsilon_zeta": 104.099, "bb_type": "--", "chi": -129.995, "glyco_bond": "anti", "C5prime_xyz": [ -2.067, 8.680, -0.720 ], "P_xyz": [ 0.543, 8.707, -0.596 ], "form": ".", "ssZp": 1.529, "Dp": 1.518, "splay_angle": 43.247, "splay_distance": 7.424, "splay_ratio": 0.369, "d22": null, "d64": null, "eta": 38.332, "theta": 175.204, "eta_prime": 114.659, "theta_prime": 132.902, "eta_base": 117.118, "theta_base": 139.703, "v0": -24.143, "v1": 37.243, "v2": -35.358, "v3": 22.317, "v4": 0.965, "amplitude": 37.675, "phase_angle": 159.803, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.544, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 159.117, 219.742, 154.918 ], "x_axis": [ -0.005, 0.957, -0.291 ], "y_axis": [ -0.357, -0.273, -0.893 ], "z_axis": [ -0.934, 0.100, 0.343 ], "quaternion": [ 0.516, -0.481, -0.312, 0.637 ] } }, { "index": 243, "index_chain": 243, "chain_name": "A", "nt_resnum": 245, "nt_name": "G", "nt_code": "G", "nt_id": "///A/245", "linked_nts": [ "///A/244", "///A/246" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": 61.459, "beta": -83.029, "gamma": -111.623, "delta": 146.663, "epsilon": -154.675, "zeta": 157.709, "epsilon_zeta": 47.616, "bb_type": "--", "chi": -112.355, "glyco_bond": "anti", "C5prime_xyz": [ -2.368, 8.425, -1.598 ], "P_xyz": [ -3.345, 8.863, -4.003 ], "form": ".", "ssZp": 1.985, "Dp": 1.975, "splay_angle": 51.577, "splay_distance": 8.050, "splay_ratio": 0.436, "d22": null, "d64": null, "eta": -55.694, "theta": 40.218, "eta_prime": -94.350, "theta_prime": 69.295, "eta_base": -109.718, "theta_base": 90.702, "v0": -24.964, "v1": 38.661, "v2": -36.799, "v3": 23.347, "v4": 0.782, "amplitude": 39.143, "phase_angle": 160.073, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 162.217, 213.557, 157.609 ], "x_axis": [ -0.243, -0.517, 0.821 ], "y_axis": [ -0.541, -0.630, -0.557 ], "z_axis": [ 0.805, -0.579, -0.127 ], "quaternion": [ 0.009, 0.615, -0.430, 0.661 ] } }, { "index": 244, "index_chain": 244, "chain_name": "A", "nt_resnum": 246, "nt_name": "U", "nt_code": "U", "nt_id": "///A/246", "linked_nts": [ "///A/245", "///A/247" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate", "alpha": -81.066, "beta": 151.913, "gamma": 38.864, "delta": 80.409, "epsilon": -148.934, "zeta": -72.086, "epsilon_zeta": -76.848, "bb_type": "BI", "chi": -174.884, "glyco_bond": "anti", "C5prime_xyz": [ -1.426, 8.541, 1.369 ], "P_xyz": [ 1.119, 8.658, 1.969 ], "form": "A", "ssZp": 4.640, "Dp": 4.635, "splay_angle": 26.298, "splay_distance": 4.119, "splay_ratio": 0.231, "d22": null, "d64": null, "eta": 158.041, "theta": -142.172, "eta_prime": 146.757, "theta_prime": -141.991, "eta_base": 151.066, "theta_base": -120.049, "v0": 1.055, "v1": -23.407, "v2": 35.560, "v3": -35.922, "v4": 22.021, "amplitude": 37.187, "phase_angle": 17.010, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "#a", "suiteness": 0.761, "filter_rmsd": 0.103, "frame": { "rmsd": 0.006, "origin": [ 162.645, 218.972, 151.669 ], "x_axis": [ 0.108, -0.478, 0.872 ], "y_axis": [ -0.389, -0.827, -0.406 ], "z_axis": [ 0.915, -0.295, -0.275 ], "quaternion": [ -0.037, 0.743, -0.292, 0.601 ] } }, { "index": 245, "index_chain": 245, "chain_name": "A", "nt_resnum": 247, "nt_name": "A", "nt_code": "A", "nt_id": "///A/247", "linked_nts": [ "///A/246", "///A/248" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -61.345, "beta": 173.685, "gamma": 52.143, "delta": 78.326, "epsilon": -114.962, "zeta": -71.911, "epsilon_zeta": -43.051, "bb_type": "--", "chi": -172.613, "glyco_bond": "anti", "C5prime_xyz": [ -1.469, 8.566, 1.233 ], "P_xyz": [ 1.041, 9.053, 1.752 ], "form": ".", "ssZp": 4.614, "Dp": 4.775, "splay_angle": 41.749, "splay_distance": 6.352, "splay_ratio": 0.356, "d22": null, "d64": null, "eta": 176.873, "theta": -118.778, "eta_prime": -173.291, "theta_prime": -109.069, "eta_base": -138.790, "theta_base": -60.240, "v0": 1.818, "v1": -25.021, "v2": 37.497, "v3": -37.479, "v4": 22.470, "amplitude": 39.009, "phase_angle": 16.008, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.969, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 166.742, 219.311, 151.933 ], "x_axis": [ -0.122, -0.839, 0.531 ], "y_axis": [ -0.454, -0.428, -0.781 ], "z_axis": [ 0.882, -0.336, -0.329 ], "quaternion": [ -0.174, 0.639, -0.506, 0.553 ] } }, { "index": 246, "index_chain": 246, "chain_name": "A", "nt_resnum": 248, "nt_name": "G", "nt_code": "G", "nt_id": "///A/248", "linked_nts": [ "///A/247", "///A/249" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -50.916, "beta": 147.417, "gamma": 62.118, "delta": 80.125, "epsilon": -131.759, "zeta": -89.326, "epsilon_zeta": -42.434, "bb_type": "BI", "chi": 179.985, "glyco_bond": "anti", "C5prime_xyz": [ -1.572, 8.457, 1.656 ], "P_xyz": [ 1.025, 8.751, 1.589 ], "form": "A", "ssZp": 4.725, "Dp": 4.727, "splay_angle": 24.729, "splay_distance": 3.767, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 163.385, "theta": -145.429, "eta_prime": -164.757, "theta_prime": -145.581, "eta_base": -90.320, "theta_base": -119.427, "v0": 2.146, "v1": -24.712, "v2": 36.651, "v3": -36.400, "v4": 21.598, "amplitude": 38.022, "phase_angle": 15.433, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.294, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 168.195, 213.141, 151.523 ], "x_axis": [ -0.596, -0.678, -0.431 ], "y_axis": [ -0.105, 0.598, -0.794 ], "z_axis": [ 0.796, -0.428, -0.428 ], "quaternion": [ 0.379, -0.242, 0.810, -0.377 ] } }, { "index": 247, "index_chain": 247, "chain_name": "A", "nt_resnum": 249, "nt_name": "C", "nt_code": "C", "nt_id": "///A/249", "linked_nts": [ "///A/248", "///A/250" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -62.087, "beta": 158.819, "gamma": 60.890, "delta": 81.891, "epsilon": -146.488, "zeta": -57.809, "epsilon_zeta": -88.680, "bb_type": "BI", "chi": -171.336, "glyco_bond": "anti", "C5prime_xyz": [ -1.274, 8.575, 1.205 ], "P_xyz": [ 1.335, 8.759, 1.175 ], "form": "A", "ssZp": 4.603, "Dp": 4.651, "splay_angle": 21.789, "splay_distance": 3.441, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": 167.475, "theta": -124.914, "eta_prime": -178.892, "theta_prime": -119.529, "eta_base": -135.382, "theta_base": -85.652, "v0": 3.927, "v1": -25.788, "v2": 36.670, "v3": -35.388, "v4": 19.828, "amplitude": 37.595, "phase_angle": 12.733, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.623, "filter_rmsd": 0.061, "frame": { "rmsd": 0.006, "origin": [ 170.626, 210.312, 150.996 ], "x_axis": [ -0.560, -0.180, -0.809 ], "y_axis": [ 0.288, 0.873, -0.394 ], "z_axis": [ 0.777, -0.453, -0.437 ], "quaternion": [ 0.468, 0.032, 0.847, -0.250 ] } }, { "index": 248, "index_chain": 248, "chain_name": "A", "nt_resnum": 250, "nt_name": "G", "nt_code": "G", "nt_id": "///A/250", "linked_nts": [ "///A/249", "///A/251" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -85.189, "beta": -156.835, "gamma": 63.927, "delta": 148.040, "epsilon": -141.615, "zeta": -100.106, "epsilon_zeta": -41.510, "bb_type": "BI", "chi": -125.971, "glyco_bond": "anti", "C5prime_xyz": [ -1.637, 8.622, -0.870 ], "P_xyz": [ 0.661, 9.244, 0.251 ], "form": ".", "ssZp": 1.869, "Dp": 1.824, "splay_angle": 57.577, "splay_distance": 9.528, "splay_ratio": 0.482, "d22": null, "d64": null, "eta": 172.042, "theta": -113.571, "eta_prime": -154.177, "theta_prime": -149.791, "eta_base": -107.178, "theta_base": -156.344, "v0": -19.420, "v1": 34.166, "v2": -34.995, "v3": 24.661, "v4": -3.471, "amplitude": 35.959, "phase_angle": 166.703, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.361, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 171.016, 208.352, 148.194 ], "x_axis": [ -0.495, 0.715, -0.493 ], "y_axis": [ 0.766, 0.627, 0.141 ], "z_axis": [ 0.410, -0.308, -0.858 ], "quaternion": [ 0.262, 0.429, 0.863, -0.048 ] } }, { "index": 249, "index_chain": 249, "chain_name": "A", "nt_resnum": 251, "nt_name": "G", "nt_code": "G", "nt_id": "///A/251", "linked_nts": [ "///A/250", "///A/252" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -93.523, "beta": -120.057, "gamma": -74.160, "delta": 78.808, "epsilon": -149.575, "zeta": 53.946, "epsilon_zeta": 156.479, "bb_type": "--", "chi": 96.450, "glyco_bond": "--", "C5prime_xyz": [ -4.087, 5.390, 3.163 ], "P_xyz": [ -5.936, 6.336, 4.771 ], "form": ".", "ssZp": 0.259, "Dp": 4.600, "splay_angle": 106.232, "splay_distance": 13.810, "splay_ratio": 0.807, "d22": null, "d64": null, "eta": 75.070, "theta": -77.342, "eta_prime": 71.768, "theta_prime": -65.098, "eta_base": 103.129, "theta_base": -70.362, "v0": 2.026, "v1": -25.017, "v2": 37.359, "v3": -37.158, "v4": 22.098, "amplitude": 38.798, "phase_angle": 15.651, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.020, "frame": { "rmsd": 0.020, "origin": [ 176.252, 200.462, 147.138 ], "x_axis": [ -0.301, -0.783, 0.545 ], "y_axis": [ 0.799, 0.105, 0.592 ], "z_axis": [ -0.520, 0.614, 0.594 ], "quaternion": [ 0.591, -0.009, -0.450, -0.669 ] } }, { "index": 250, "index_chain": 250, "chain_name": "A", "nt_resnum": 252, "nt_name": "C", "nt_code": "C", "nt_id": "///A/252", "linked_nts": [ "///A/251", "///A/253" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BII,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -163.823, "beta": -176.405, "gamma": 171.037, "delta": 152.171, "epsilon": -131.107, "zeta": 168.398, "epsilon_zeta": 60.495, "bb_type": "BII", "chi": -152.616, "glyco_bond": "anti", "C5prime_xyz": [ -1.847, 8.667, 0.619 ], "P_xyz": [ 0.307, 10.055, 0.076 ], "form": ".", "ssZp": 1.094, "Dp": 1.468, "splay_angle": 79.055, "splay_distance": 11.607, "splay_ratio": 0.638, "d22": null, "d64": null, "eta": -111.294, "theta": 87.031, "eta_prime": -68.824, "theta_prime": 70.769, "eta_base": -18.674, "theta_base": 64.501, "v0": -21.125, "v1": 37.374, "v2": -38.372, "v3": 27.219, "v4": -3.991, "amplitude": 39.384, "phase_angle": 166.989, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.059, "frame": { "rmsd": 0.006, "origin": [ 174.519, 214.069, 145.536 ], "x_axis": [ 0.825, 0.562, -0.060 ], "y_axis": [ 0.563, -0.826, 0.014 ], "z_axis": [ -0.041, -0.045, -0.998 ], "quaternion": [ 0.016, 0.955, 0.294, -0.026 ] } }, { "index": 251, "index_chain": 251, "chain_name": "A", "nt_resnum": 253, "nt_name": "G", "nt_code": "G", "nt_id": "///A/253", "linked_nts": [ "///A/252", "///A/254" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate", "alpha": -165.043, "beta": 113.109, "gamma": 82.564, "delta": 84.169, "epsilon": -147.738, "zeta": -70.263, "epsilon_zeta": -77.475, "bb_type": "BI", "chi": -174.488, "glyco_bond": "anti", "C5prime_xyz": [ -1.280, 8.470, 1.390 ], "P_xyz": [ 0.890, 8.537, -0.079 ], "form": "A", "ssZp": 4.629, "Dp": 4.643, "splay_angle": 23.754, "splay_distance": 3.574, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 105.677, "theta": -131.518, "eta_prime": 113.565, "theta_prime": -144.803, "eta_base": 117.660, "theta_base": -110.780, "v0": 4.659, "v1": -25.244, "v2": 35.085, "v3": -33.365, "v4": 18.149, "amplitude": 35.781, "phase_angle": 11.318, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 176.388, 205.265, 152.865 ], "x_axis": [ 0.238, 0.927, -0.289 ], "y_axis": [ -0.407, -0.175, -0.897 ], "z_axis": [ -0.882, 0.331, 0.335 ], "quaternion": [ 0.591, -0.519, -0.251, 0.564 ] } }, { "index": 252, "index_chain": 252, "chain_name": "A", "nt_resnum": 254, "nt_name": "A", "nt_code": "A", "nt_id": "///A/254", "linked_nts": [ "///A/253", "///A/255" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -60.141, "beta": 167.216, "gamma": 53.957, "delta": 84.400, "epsilon": -146.432, "zeta": -70.523, "epsilon_zeta": -75.909, "bb_type": "BI", "chi": -166.160, "glyco_bond": "anti", "C5prime_xyz": [ -1.138, 8.518, 0.931 ], "P_xyz": [ 1.473, 8.551, 1.166 ], "form": ".", "ssZp": 4.523, "Dp": 4.639, "splay_angle": 34.076, "splay_distance": 5.566, "splay_ratio": 0.298, "d22": null, "d64": null, "eta": 169.080, "theta": -98.320, "eta_prime": -171.275, "theta_prime": -102.303, "eta_base": -109.817, "theta_base": -64.397, "v0": 5.322, "v1": -25.412, "v2": 34.768, "v3": -32.684, "v4": 17.310, "amplitude": 35.327, "phase_angle": 10.204, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.935, "filter_rmsd": 0.038, "frame": { "rmsd": 0.007, "origin": [ 174.261, 207.890, 154.031 ], "x_axis": [ -0.207, 0.573, -0.793 ], "y_axis": [ -0.475, -0.767, -0.431 ], "z_axis": [ -0.855, 0.287, 0.432 ], "quaternion": [ 0.338, -0.531, -0.046, 0.776 ] } }, { "index": 253, "index_chain": 253, "chain_name": "A", "nt_resnum": 255, "nt_name": "G", "nt_code": "G", "nt_id": "///A/255", "linked_nts": [ "///A/254", "///A/256" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": 142.892, "beta": -137.136, "gamma": 177.426, "delta": 81.857, "epsilon": -129.724, "zeta": -92.339, "epsilon_zeta": -37.386, "bb_type": "--", "chi": 175.766, "glyco_bond": "anti", "C5prime_xyz": [ -1.607, 8.315, 1.902 ], "P_xyz": [ 0.217, 9.837, 0.814 ], "form": "A", "ssZp": 4.675, "Dp": 4.692, "splay_angle": 23.986, "splay_distance": 3.689, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 161.830, "theta": -164.665, "eta_prime": -164.273, "theta_prime": -162.321, "eta_base": -91.545, "theta_base": -132.282, "v0": 2.314, "v1": -23.988, "v2": 35.389, "v3": -35.048, "v4": 20.639, "amplitude": 36.654, "phase_angle": 15.098, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.551, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 170.331, 210.764, 151.334 ], "x_axis": [ -0.508, -0.261, -0.821 ], "y_axis": [ -0.182, -0.899, 0.399 ], "z_axis": [ -0.842, 0.352, 0.409 ], "quaternion": [ -0.023, -0.495, 0.224, 0.839 ] } }, { "index": 254, "index_chain": 254, "chain_name": "A", "nt_resnum": 256, "nt_name": "C", "nt_code": "C", "nt_id": "///A/256", "linked_nts": [ "///A/255", "///A/257" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -45.379, "beta": 157.835, "gamma": 45.118, "delta": 80.885, "epsilon": -142.515, "zeta": -63.882, "epsilon_zeta": -78.633, "bb_type": "BI", "chi": -170.030, "glyco_bond": "anti", "C5prime_xyz": [ -1.414, 8.642, 1.123 ], "P_xyz": [ 1.150, 8.836, 1.559 ], "form": ".", "ssZp": 4.568, "Dp": 4.648, "splay_angle": 26.731, "splay_distance": 4.112, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": 168.692, "theta": -129.279, "eta_prime": -178.188, "theta_prime": -127.503, "eta_base": -135.865, "theta_base": -76.384, "v0": 2.314, "v1": -24.927, "v2": 36.815, "v3": -36.481, "v4": 21.515, "amplitude": 38.148, "phase_angle": 15.186, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.414, "filter_rmsd": 0.061, "frame": { "rmsd": 0.006, "origin": [ 167.641, 213.283, 151.506 ], "x_axis": [ -0.514, -0.743, -0.430 ], "y_axis": [ 0.162, -0.576, 0.802 ], "z_axis": [ -0.843, 0.342, 0.416 ], "quaternion": [ -0.286, -0.402, 0.361, 0.791 ] } }, { "index": 255, "index_chain": 255, "chain_name": "A", "nt_resnum": 257, "nt_name": "G", "nt_code": "G", "nt_id": "///A/257", "linked_nts": [ "///A/256", "///A/258" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -66.529, "beta": 166.731, "gamma": 57.770, "delta": 82.068, "epsilon": -147.627, "zeta": -120.721, "epsilon_zeta": -26.906, "bb_type": "--", "chi": -167.301, "glyco_bond": "anti", "C5prime_xyz": [ -1.202, 8.641, 0.968 ], "P_xyz": [ 1.408, 8.835, 1.055 ], "form": ".", "ssZp": 4.578, "Dp": 4.652, "splay_angle": 68.241, "splay_distance": 11.334, "splay_ratio": 0.569, "d22": null, "d64": null, "eta": 162.764, "theta": -175.627, "eta_prime": -173.900, "theta_prime": 163.801, "eta_base": -98.841, "theta_base": 151.657, "v0": 3.440, "v1": -25.067, "v2": 36.012, "v3": -34.996, "v4": 19.937, "amplitude": 37.022, "phase_angle": 13.410, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.921, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 163.739, 212.000, 151.713 ], "x_axis": [ -0.186, -0.911, 0.368 ], "y_axis": [ 0.448, 0.255, 0.857 ], "z_axis": [ -0.874, 0.324, 0.361 ], "quaternion": [ 0.598, 0.223, -0.520, -0.568 ] } }, { "index": 256, "index_chain": 256, "chain_name": "A", "nt_resnum": 258, "nt_name": "A", "nt_code": "A", "nt_id": "///A/258", "linked_nts": [ "///A/257", "///A/259" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate", "alpha": 55.075, "beta": -122.151, "gamma": -88.787, "delta": 84.656, "epsilon": -138.836, "zeta": -71.402, "epsilon_zeta": -67.435, "bb_type": "BI", "chi": -177.591, "glyco_bond": "anti", "C5prime_xyz": [ -1.261, 8.303, 1.579 ], "P_xyz": [ -1.445, 10.884, 1.841 ], "form": "A", "ssZp": 4.656, "Dp": 4.678, "splay_angle": 23.797, "splay_distance": 3.775, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": -158.514, "theta": 169.039, "eta_prime": 179.268, "theta_prime": -171.735, "eta_base": 160.374, "theta_base": -125.413, "v0": 5.443, "v1": -25.653, "v2": 35.010, "v3": -32.882, "v4": 17.345, "amplitude": 35.557, "phase_angle": 10.068, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.011, "origin": [ 162.726, 222.708, 148.137 ], "x_axis": [ -0.521, -0.722, -0.455 ], "y_axis": [ 0.132, -0.595, 0.793 ], "z_axis": [ -0.843, 0.353, 0.405 ], "quaternion": [ -0.269, -0.409, 0.361, 0.794 ] } }, { "index": 257, "index_chain": 257, "chain_name": "A", "nt_resnum": 259, "nt_name": "A", "nt_code": "A", "nt_id": "///A/259", "linked_nts": [ "///A/258", "///A/260" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -54.276, "beta": 166.758, "gamma": 50.245, "delta": 80.433, "epsilon": 177.727, "zeta": -83.979, "epsilon_zeta": -98.294, "bb_type": "BI", "chi": -168.791, "glyco_bond": "anti", "C5prime_xyz": [ -1.679, 8.670, 1.016 ], "P_xyz": [ 0.828, 9.191, 1.544 ], "form": "A", "ssZp": 4.256, "Dp": 4.277, "splay_angle": 20.461, "splay_distance": 3.069, "splay_ratio": 0.178, "d22": null, "d64": null, "eta": 164.612, "theta": -150.384, "eta_prime": -171.034, "theta_prime": -151.213, "eta_base": -116.819, "theta_base": -123.330, "v0": -1.303, "v1": -21.175, "v2": 34.351, "v3": -36.088, "v4": 23.578, "amplitude": 36.704, "phase_angle": 20.627, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.848, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 159.096, 223.545, 147.525 ], "x_axis": [ -0.325, -0.937, 0.127 ], "y_axis": [ 0.424, -0.024, 0.905 ], "z_axis": [ -0.845, 0.348, 0.405 ], "quaternion": [ 0.514, 0.271, -0.473, -0.662 ] } }, { "index": 258, "index_chain": 258, "chain_name": "A", "nt_resnum": 260, "nt_name": "A", "nt_code": "A", "nt_id": "///A/260", "linked_nts": [ "///A/259", "///A/261" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -159.382, "beta": -135.387, "gamma": 117.739, "delta": 81.889, "epsilon": -146.181, "zeta": -75.613, "epsilon_zeta": -70.568, "bb_type": "BI", "chi": -166.963, "glyco_bond": "anti", "C5prime_xyz": [ -1.392, 8.621, 0.943 ], "P_xyz": [ 1.171, 8.612, 0.437 ], "form": "A", "ssZp": 4.511, "Dp": 4.611, "splay_angle": 21.588, "splay_distance": 3.387, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 160.926, "theta": -137.893, "eta_prime": 173.113, "theta_prime": -144.261, "eta_base": -145.512, "theta_base": -118.092, "v0": 1.658, "v1": -23.441, "v2": 35.095, "v3": -35.143, "v4": 21.133, "amplitude": 36.528, "phase_angle": 16.100, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.008, "origin": [ 156.163, 224.447, 147.507 ], "x_axis": [ -0.030, -0.760, 0.649 ], "y_axis": [ 0.432, 0.576, 0.694 ], "z_axis": [ -0.902, 0.301, 0.311 ], "quaternion": [ 0.681, 0.144, -0.569, -0.437 ] } }, { "index": 259, "index_chain": 259, "chain_name": "A", "nt_resnum": 261, "nt_name": "C", "nt_code": "C", "nt_id": "///A/261", "linked_nts": [ "///A/260", "///A/262" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop", "alpha": -61.244, "beta": 164.476, "gamma": 54.595, "delta": 79.335, "epsilon": -126.851, "zeta": -64.107, "epsilon_zeta": -62.745, "bb_type": "--", "chi": -163.855, "glyco_bond": "anti", "C5prime_xyz": [ -1.289, 8.722, 0.745 ], "P_xyz": [ 1.300, 9.054, 0.716 ], "form": ".", "ssZp": 4.461, "Dp": 4.753, "splay_angle": 46.642, "splay_distance": 7.156, "splay_ratio": 0.396, "d22": null, "d64": null, "eta": 169.524, "theta": -119.868, "eta_prime": -177.527, "theta_prime": -116.568, "eta_base": -131.611, "theta_base": -82.308, "v0": 2.726, "v1": -25.627, "v2": 37.602, "v3": -37.053, "v4": 21.631, "amplitude": 38.872, "phase_angle": 14.686, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.942, "filter_rmsd": 0.062, "frame": { "rmsd": 0.006, "origin": [ 152.919, 223.911, 148.322 ], "x_axis": [ 0.212, -0.275, 0.938 ], "y_axis": [ 0.291, 0.934, 0.208 ], "z_axis": [ -0.933, 0.228, 0.278 ], "quaternion": [ 0.778, -0.006, -0.601, -0.182 ] } }, { "index": 260, "index_chain": 260, "chain_name": "A", "nt_resnum": 262, "nt_name": "G", "nt_code": "G", "nt_id": "///A/262", "linked_nts": [ "///A/261", "///A/263" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor", "alpha": -56.295, "beta": 179.910, "gamma": 46.008, "delta": 78.493, "epsilon": -135.765, "zeta": -81.751, "epsilon_zeta": -54.014, "bb_type": "BI", "chi": 170.359, "glyco_bond": "anti", "C5prime_xyz": [ -1.647, 8.220, 2.147 ], "P_xyz": [ 0.597, 8.364, 3.486 ], "form": "A", "ssZp": 4.700, "Dp": 4.723, "splay_angle": 26.267, "splay_distance": 4.063, "splay_ratio": 0.234, "d22": null, "d64": null, "eta": 168.020, "theta": -147.686, "eta_prime": -171.359, "theta_prime": -140.387, "eta_base": -115.219, "theta_base": -112.524, "v0": 2.056, "v1": -25.205, "v2": 37.567, "v3": -37.386, "v4": 22.268, "amplitude": 39.014, "phase_angle": 15.651, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.662, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 149.581, 225.429, 154.467 ], "x_axis": [ 0.861, 0.304, 0.407 ], "y_axis": [ 0.227, 0.486, -0.844 ], "z_axis": [ -0.454, 0.819, 0.350 ], "quaternion": [ 0.821, -0.506, -0.262, 0.023 ] } }, { "index": 261, "index_chain": 261, "chain_name": "A", "nt_resnum": 263, "nt_name": "G", "nt_code": "G", "nt_id": "///A/263", "linked_nts": [ "///A/262", "///A/264" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor", "alpha": -60.487, "beta": 170.004, "gamma": 58.073, "delta": 81.610, "epsilon": -158.130, "zeta": -65.308, "epsilon_zeta": -92.822, "bb_type": "BI", "chi": -172.949, "glyco_bond": "anti", "C5prime_xyz": [ -1.546, 8.574, 1.273 ], "P_xyz": [ 1.009, 8.974, 1.655 ], "form": ".", "ssZp": 4.549, "Dp": 4.557, "splay_angle": 21.465, "splay_distance": 4.130, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 170.896, "theta": -116.873, "eta_prime": -174.387, "theta_prime": -129.844, "eta_base": -134.778, "theta_base": -114.528, "v0": 2.078, "v1": -24.046, "v2": 35.632, "v3": -35.423, "v4": 21.019, "amplitude": 36.969, "phase_angle": 15.454, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.832, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 148.054, 227.096, 157.843 ], "x_axis": [ 0.809, 0.578, -0.109 ], "y_axis": [ -0.277, 0.211, -0.937 ], "z_axis": [ -0.519, 0.788, 0.331 ], "quaternion": [ 0.767, -0.563, -0.134, 0.279 ] } }, { "index": 262, "index_chain": 262, "chain_name": "A", "nt_resnum": 264, "nt_name": "G", "nt_code": "G", "nt_id": "///A/264", "linked_nts": [ "///A/263", "///A/265" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 157.316, "beta": -172.238, "gamma": 179.402, "delta": 81.996, "epsilon": -149.999, "zeta": -70.424, "epsilon_zeta": -79.575, "bb_type": "BI", "chi": -178.731, "glyco_bond": "anti", "C5prime_xyz": [ -1.628, 8.517, 1.584 ], "P_xyz": [ -0.289, 10.597, 0.736 ], "form": "A", "ssZp": 4.551, "Dp": 4.559, "splay_angle": 23.546, "splay_distance": 3.698, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 165.284, "theta": -174.828, "eta_prime": -178.543, "theta_prime": -167.092, "eta_base": -139.373, "theta_base": -132.653, "v0": -0.117, "v1": -21.822, "v2": 34.202, "v3": -35.218, "v4": 22.308, "amplitude": 36.128, "phase_angle": 18.794, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.953, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 148.851, 229.461, 161.133 ], "x_axis": [ 0.593, 0.580, -0.559 ], "y_axis": [ -0.688, 0.004, -0.726 ], "z_axis": [ -0.419, 0.815, 0.401 ], "quaternion": [ 0.707, -0.545, 0.050, 0.449 ] } }, { "index": 263, "index_chain": 263, "chain_name": "A", "nt_resnum": 265, "nt_name": "A", "nt_code": "A", "nt_id": "///A/265", "linked_nts": [ "///A/264", "///A/266" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,ribose-zipper", "alpha": -61.328, "beta": -175.743, "gamma": 41.846, "delta": 83.255, "epsilon": -162.674, "zeta": -72.821, "epsilon_zeta": -89.853, "bb_type": "BI", "chi": -165.262, "glyco_bond": "anti", "C5prime_xyz": [ -1.407, 8.624, 0.882 ], "P_xyz": [ 0.948, 8.995, 1.955 ], "form": ".", "ssZp": 4.363, "Dp": 4.451, "splay_angle": 32.631, "splay_distance": 4.994, "splay_ratio": 0.281, "d22": null, "d64": null, "eta": 167.566, "theta": -120.712, "eta_prime": -179.003, "theta_prime": -120.010, "eta_base": -135.371, "theta_base": -72.719, "v0": 1.648, "v1": -22.949, "v2": 34.407, "v3": -34.430, "v4": 20.675, "amplitude": 35.807, "phase_angle": 16.071, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.732, "filter_rmsd": 0.043, "frame": { "rmsd": 0.009, "origin": [ 149.160, 232.473, 163.256 ], "x_axis": [ 0.105, 0.360, -0.927 ], "y_axis": [ -0.885, -0.391, -0.252 ], "z_axis": [ -0.454, 0.847, 0.277 ], "quaternion": [ 0.498, -0.552, 0.238, 0.625 ] } }, { "index": 264, "index_chain": 264, "chain_name": "A", "nt_resnum": 266, "nt_name": "U", "nt_code": "U", "nt_id": "///A/266", "linked_nts": [ "///A/265", "///A/267" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,ribose-zipper", "alpha": -175.853, "beta": -137.401, "gamma": 131.222, "delta": 78.765, "epsilon": -89.576, "zeta": -118.718, "epsilon_zeta": 29.142, "bb_type": "--", "chi": -173.368, "glyco_bond": "anti", "C5prime_xyz": [ -1.475, 8.549, 1.304 ], "P_xyz": [ 0.974, 8.922, 0.503 ], "form": ".", "ssZp": 4.406, "Dp": 4.706, "splay_angle": 20.142, "splay_distance": 3.664, "splay_ratio": 0.186, "d22": 4.716, "d64": 5.629, "eta": 166.832, "theta": -118.576, "eta_prime": -171.992, "theta_prime": -129.473, "eta_base": -109.744, "theta_base": -123.375, "v0": 2.370, "v1": -25.612, "v2": 37.879, "v3": -37.562, "v4": 22.147, "amplitude": 39.257, "phase_angle": 15.224, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 147.112, 236.574, 161.275 ], "x_axis": [ -0.615, -0.186, -0.766 ], "y_axis": [ -0.606, -0.511, 0.610 ], "z_axis": [ -0.505, 0.839, 0.201 ], "quaternion": [ 0.137, -0.417, 0.475, 0.763 ] } }, { "index": 265, "index_chain": 265, "chain_name": "A", "nt_resnum": 267, "nt_name": "C", "nt_code": "C", "nt_id": "///A/267", "linked_nts": [ "///A/266", "///A/268" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": 76.003, "beta": -92.929, "gamma": -138.109, "delta": 78.268, "epsilon": 153.509, "zeta": 33.923, "epsilon_zeta": 119.586, "bb_type": "--", "chi": -168.876, "glyco_bond": "anti", "C5prime_xyz": [ -1.229, 8.639, 1.039 ], "P_xyz": [ -1.372, 10.359, -0.916 ], "form": ".", "ssZp": 4.113, "Dp": 4.145, "splay_angle": 128.335, "splay_distance": 14.520, "splay_ratio": 0.901, "d22": null, "d64": null, "eta": -144.938, "theta": -177.727, "eta_prime": -152.223, "theta_prime": 156.616, "eta_base": -125.948, "theta_base": 114.238, "v0": 3.141, "v1": -26.197, "v2": 37.989, "v3": -37.242, "v4": 21.547, "amplitude": 39.175, "phase_angle": 14.138, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.005, "origin": [ 146.127, 239.754, 159.745 ], "x_axis": [ -0.822, -0.125, -0.556 ], "y_axis": [ -0.526, -0.206, 0.825 ], "z_axis": [ -0.218, 0.971, 0.103 ], "quaternion": [ 0.137, -0.265, 0.615, 0.730 ] } }, { "index": 266, "index_chain": 266, "chain_name": "A", "nt_resnum": 268, "nt_name": "A", "nt_code": "A", "nt_id": "///A/268", "linked_nts": [ "///A/267", "///A/269" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate,splayed-apart", "alpha": -136.987, "beta": -74.297, "gamma": 176.186, "delta": 78.901, "epsilon": 154.383, "zeta": 32.038, "epsilon_zeta": 122.345, "bb_type": "--", "chi": -97.558, "glyco_bond": "anti", "C5prime_xyz": [ -2.192, 7.587, -2.764 ], "P_xyz": [ -2.940, 5.533, -4.198 ], "form": ".", "ssZp": 1.620, "Dp": 4.145, "splay_angle": 48.591, "splay_distance": 8.671, "splay_ratio": 0.415, "d22": null, "d64": null, "eta": -23.890, "theta": -114.997, "eta_prime": 49.937, "theta_prime": -154.216, "eta_base": 51.568, "theta_base": -158.652, "v0": 3.526, "v1": -26.112, "v2": 37.452, "v3": -36.386, "v4": 20.810, "amplitude": 38.508, "phase_angle": 13.446, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 150.648, 244.491, 172.704 ], "x_axis": [ 0.788, -0.612, -0.073 ], "y_axis": [ -0.094, -0.002, -0.996 ], "z_axis": [ 0.609, 0.791, -0.059 ], "quaternion": [ 0.657, -0.680, 0.259, -0.197 ] } }, { "index": 267, "index_chain": 267, "chain_name": "A", "nt_resnum": 269, "nt_name": "G", "nt_code": "G", "nt_id": "///A/269", "linked_nts": [ "///A/268", "///A/270" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -151.673, "beta": 106.616, "gamma": -169.096, "delta": 84.401, "epsilon": -168.623, "zeta": -67.648, "epsilon_zeta": -100.975, "bb_type": "BI", "chi": -140.320, "glyco_bond": "anti", "C5prime_xyz": [ -1.185, 8.648, -0.610 ], "P_xyz": [ -1.965, 10.704, -2.003 ], "form": ".", "ssZp": 3.803, "Dp": 4.454, "splay_angle": 21.806, "splay_distance": 4.017, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": -126.693, "theta": 173.291, "eta_prime": -119.210, "theta_prime": -174.919, "eta_base": -106.901, "theta_base": -150.533, "v0": 5.198, "v1": -25.597, "v2": 35.144, "v3": -33.095, "v4": 17.667, "amplitude": 35.738, "phase_angle": 10.459, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 158.427, 246.590, 169.498 ], "x_axis": [ 0.685, -0.205, -0.699 ], "y_axis": [ -0.678, 0.169, -0.715 ], "z_axis": [ 0.265, 0.964, -0.023 ], "quaternion": [ 0.677, -0.620, 0.356, 0.175 ] } }, { "index": 268, "index_chain": 268, "chain_name": "A", "nt_resnum": 270, "nt_name": "C", "nt_code": "C", "nt_id": "///A/270", "linked_nts": [ "///A/269", "///A/271" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 128.852, "beta": -152.847, "gamma": -157.999, "delta": 81.544, "epsilon": -164.976, "zeta": -82.590, "epsilon_zeta": -82.386, "bb_type": "BI", "chi": -168.876, "glyco_bond": "anti", "C5prime_xyz": [ -1.300, 8.673, 1.044 ], "P_xyz": [ -0.266, 10.676, -0.283 ], "form": ".", "ssZp": 4.476, "Dp": 4.487, "splay_angle": 29.127, "splay_distance": 4.608, "splay_ratio": 0.255, "d22": 4.790, "d64": 5.167, "eta": 177.569, "theta": -173.750, "eta_prime": -166.410, "theta_prime": -169.325, "eta_base": -129.518, "theta_base": -139.280, "v0": 0.905, "v1": -23.028, "v2": 35.144, "v3": -35.582, "v4": 21.874, "amplitude": 36.794, "phase_angle": 17.220, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.157, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 161.627, 249.013, 169.349 ], "x_axis": [ 0.369, -0.152, -0.917 ], "y_axis": [ -0.862, 0.314, -0.399 ], "z_axis": [ 0.348, 0.937, -0.015 ], "quaternion": [ 0.646, -0.517, 0.490, 0.275 ] } }, { "index": 269, "index_chain": 269, "chain_name": "A", "nt_resnum": 271, "nt_name": "C", "nt_code": "C", "nt_id": "///A/271", "linked_nts": [ "///A/270", "///A/272" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 177.727, "beta": -153.714, "gamma": 154.413, "delta": 82.635, "epsilon": -119.526, "zeta": -85.788, "epsilon_zeta": -33.738, "bb_type": "--", "chi": 176.030, "glyco_bond": "anti", "C5prime_xyz": [ -1.184, 8.252, 1.923 ], "P_xyz": [ 1.089, 9.286, 1.160 ], "form": ".", "ssZp": 4.767, "Dp": 4.760, "splay_angle": 25.303, "splay_distance": 4.802, "splay_ratio": 0.245, "d22": 4.551, "d64": 5.861, "eta": 169.160, "theta": -122.901, "eta_prime": -177.481, "theta_prime": -135.599, "eta_base": -137.393, "theta_base": -125.759, "v0": 4.699, "v1": -25.828, "v2": 35.993, "v3": -34.237, "v4": 18.621, "amplitude": 36.717, "phase_angle": 11.398, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.106, "filter_rmsd": 0.066, "frame": { "rmsd": 0.007, "origin": [ 164.937, 252.218, 169.280 ], "x_axis": [ -0.182, 0.015, -0.983 ], "y_axis": [ -0.948, 0.263, 0.179 ], "z_axis": [ 0.262, 0.965, -0.033 ], "quaternion": [ 0.512, -0.384, 0.608, 0.470 ] } }, { "index": 270, "index_chain": 270, "chain_name": "A", "nt_resnum": 272, "nt_name": "C", "nt_code": "C", "nt_id": "///A/272", "linked_nts": [ "///A/271", "///A/273" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,junction-loop", "alpha": 83.350, "beta": -143.604, "gamma": -110.428, "delta": 87.191, "epsilon": -153.726, "zeta": -59.003, "epsilon_zeta": -94.722, "bb_type": "BI", "chi": 175.277, "glyco_bond": "anti", "C5prime_xyz": [ -1.181, 8.156, 1.988 ], "P_xyz": [ -0.502, 10.654, 2.237 ], "form": ".", "ssZp": 4.404, "Dp": 4.529, "splay_angle": 21.250, "splay_distance": 3.873, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 178.434, "theta": -159.948, "eta_prime": -170.577, "theta_prime": -158.245, "eta_base": -135.779, "theta_base": -132.748, "v0": 5.608, "v1": -24.361, "v2": 32.750, "v3": -30.448, "v4": 15.743, "amplitude": 33.172, "phase_angle": 9.143, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.068, "frame": { "rmsd": 0.010, "origin": [ 168.637, 254.508, 167.250 ], "x_axis": [ -0.569, 0.036, -0.822 ], "y_axis": [ -0.807, 0.166, 0.566 ], "z_axis": [ 0.157, 0.985, -0.065 ], "quaternion": [ 0.365, -0.287, 0.671, 0.578 ] } }, { "index": 271, "index_chain": 271, "chain_name": "A", "nt_resnum": 273, "nt_name": "A", "nt_code": "A", "nt_id": "///A/273", "linked_nts": [ "///A/272", "///A/274" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate", "alpha": 166.912, "beta": 179.470, "gamma": 162.850, "delta": 82.209, "epsilon": -105.948, "zeta": -79.240, "epsilon_zeta": -26.708, "bb_type": "--", "chi": 172.936, "glyco_bond": "anti", "C5prime_xyz": [ -1.649, 8.236, 2.045 ], "P_xyz": [ 0.068, 10.157, 1.646 ], "form": ".", "ssZp": 4.634, "Dp": 4.656, "splay_angle": 33.019, "splay_distance": 5.158, "splay_ratio": 0.285, "d22": null, "d64": null, "eta": 157.403, "theta": -141.418, "eta_prime": 174.505, "theta_prime": -132.189, "eta_base": -150.678, "theta_base": -75.970, "v0": 0.712, "v1": -22.383, "v2": 34.287, "v3": -34.857, "v4": 21.532, "amplitude": 35.953, "phase_angle": 17.511, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.441, "filter_rmsd": 0.041, "frame": { "rmsd": 0.011, "origin": [ 170.977, 256.525, 164.914 ], "x_axis": [ -0.904, 0.062, -0.424 ], "y_axis": [ -0.411, 0.151, 0.899 ], "z_axis": [ 0.119, 0.987, -0.111 ], "quaternion": [ 0.185, -0.119, 0.736, 0.641 ] } }, { "index": 272, "index_chain": 272, "chain_name": "A", "nt_resnum": 274, "nt_name": "A", "nt_code": "A", "nt_id": "///A/274", "linked_nts": [ "///A/273", "///A/275" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor", "alpha": -47.743, "beta": 144.931, "gamma": 50.502, "delta": 80.433, "epsilon": -93.147, "zeta": -124.617, "epsilon_zeta": 31.471, "bb_type": "--", "chi": 176.035, "glyco_bond": "anti", "C5prime_xyz": [ -2.278, 8.442, 1.749 ], "P_xyz": [ 0.181, 8.863, 2.516 ], "form": "B", "ssZp": 4.298, "Dp": 4.393, "splay_angle": 23.300, "splay_distance": 3.773, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 166.153, "theta": -110.342, "eta_prime": -168.248, "theta_prime": -114.161, "eta_base": -97.380, "theta_base": -68.716, "v0": -5.345, "v1": -17.783, "v2": 32.725, "v3": -36.774, "v4": 26.530, "amplitude": 36.662, "phase_angle": 26.795, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.675, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 167.809, 260.491, 163.999 ], "x_axis": [ -0.836, -0.161, 0.524 ], "y_axis": [ 0.544, -0.122, 0.830 ], "z_axis": [ -0.070, 0.979, 0.189 ], "quaternion": [ -0.241, 0.155, 0.617, 0.733 ] } }, { "index": 273, "index_chain": 273, "chain_name": "A", "nt_resnum": 275, "nt_name": "A", "nt_code": "A", "nt_id": "///A/275", "linked_nts": [ "///A/274", "///A/276" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop", "alpha": 102.789, "beta": -119.778, "gamma": -163.723, "delta": 142.751, "epsilon": -96.851, "zeta": -68.542, "epsilon_zeta": -28.309, "bb_type": "--", "chi": -175.245, "glyco_bond": "anti", "C5prime_xyz": [ -1.839, 8.199, 1.749 ], "P_xyz": [ 0.380, 9.312, 0.941 ], "form": ".", "ssZp": 1.526, "Dp": 1.409, "splay_angle": 53.272, "splay_distance": 9.331, "splay_ratio": 0.450, "d22": null, "d64": null, "eta": -158.083, "theta": -91.603, "eta_prime": -152.950, "theta_prime": -94.308, "eta_base": -96.312, "theta_base": -70.695, "v0": -17.684, "v1": 30.663, "v2": -31.317, "v3": 21.855, "v4": -2.781, "amplitude": 32.250, "phase_angle": 166.179, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.036, "frame": { "rmsd": 0.007, "origin": [ 165.999, 263.025, 166.129 ], "x_axis": [ -0.032, -0.660, 0.751 ], "y_axis": [ 0.983, 0.116, 0.144 ], "z_axis": [ -0.182, 0.742, 0.645 ], "quaternion": [ 0.657, -0.228, -0.354, -0.625 ] } }, { "index": 274, "index_chain": 274, "chain_name": "A", "nt_resnum": 276, "nt_name": "C", "nt_code": "C", "nt_id": "///A/276", "linked_nts": [ "///A/275", "///A/277" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": 93.062, "beta": -149.129, "gamma": -157.380, "delta": 79.122, "epsilon": -173.311, "zeta": -80.985, "epsilon_zeta": -92.326, "bb_type": "BI", "chi": -160.492, "glyco_bond": "anti", "C5prime_xyz": [ -1.561, 8.839, 0.508 ], "P_xyz": [ -0.938, 10.673, -1.266 ], "form": "A", "ssZp": 4.334, "Dp": 4.404, "splay_angle": 18.585, "splay_distance": 3.239, "splay_ratio": 0.173, "d22": 4.122, "d64": 4.460, "eta": 124.193, "theta": -178.223, "eta_prime": 165.395, "theta_prime": -175.321, "eta_base": -147.286, "theta_base": -148.361, "v0": -1.207, "v1": -22.065, "v2": 35.614, "v3": -37.322, "v4": 24.322, "amplitude": 38.000, "phase_angle": 20.411, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.056, "frame": { "rmsd": 0.009, "origin": [ 168.002, 269.141, 172.885 ], "x_axis": [ 0.655, -0.580, 0.484 ], "y_axis": [ 0.619, 0.044, -0.784 ], "z_axis": [ 0.434, 0.813, 0.388 ], "quaternion": [ 0.722, -0.553, -0.017, -0.415 ] } }, { "index": 275, "index_chain": 275, "chain_name": "A", "nt_resnum": 277, "nt_name": "C", "nt_code": "C", "nt_id": "///A/277", "linked_nts": [ "///A/276", "///A/278" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 160.103, "beta": -147.752, "gamma": 169.037, "delta": 83.073, "epsilon": -130.833, "zeta": -81.348, "epsilon_zeta": -49.485, "bb_type": "BI", "chi": -175.916, "glyco_bond": "anti", "C5prime_xyz": [ -1.515, 8.643, 1.427 ], "P_xyz": [ 0.514, 9.939, 0.406 ], "form": ".", "ssZp": 4.426, "Dp": 4.512, "splay_angle": 17.666, "splay_distance": 3.094, "splay_ratio": 0.161, "d22": null, "d64": null, "eta": 170.488, "theta": -124.156, "eta_prime": -175.895, "theta_prime": -144.916, "eta_base": -137.628, "theta_base": -123.229, "v0": -2.199, "v1": -18.958, "v2": 31.687, "v3": -33.863, "v4": 22.738, "amplitude": 34.230, "phase_angle": 22.222, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.672, "filter_rmsd": 0.064, "frame": { "rmsd": 0.006, "origin": [ 168.465, 270.524, 175.777 ], "x_axis": [ 0.856, -0.516, 0.028 ], "y_axis": [ 0.292, 0.437, -0.851 ], "z_axis": [ 0.427, 0.737, 0.524 ], "quaternion": [ 0.839, -0.473, 0.119, -0.241 ] } }, { "index": 276, "index_chain": 276, "chain_name": "A", "nt_resnum": 278, "nt_name": "A", "nt_code": "A", "nt_id": "///A/278", "linked_nts": [ "///A/277", "///A/279" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 135.889, "beta": -173.572, "gamma": 169.832, "delta": 79.152, "epsilon": -128.723, "zeta": -109.066, "epsilon_zeta": -19.657, "bb_type": "--", "chi": -176.256, "glyco_bond": "anti", "C5prime_xyz": [ -0.955, 8.267, 1.460 ], "P_xyz": [ 0.601, 10.052, 0.368 ], "form": "A", "ssZp": 4.779, "Dp": 4.821, "splay_angle": 22.787, "splay_distance": 3.286, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 120.602, "theta": 179.314, "eta_prime": 142.722, "theta_prime": -172.938, "eta_base": -170.254, "theta_base": -144.234, "v0": 9.517, "v1": -31.703, "v2": 40.856, "v3": -36.430, "v4": 16.960, "amplitude": 41.047, "phase_angle": 5.528, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.317, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 169.917, 271.099, 178.447 ], "x_axis": [ 0.639, -0.401, -0.657 ], "y_axis": [ -0.147, 0.775, -0.615 ], "z_axis": [ 0.755, 0.489, 0.436 ], "quaternion": [ 0.844, -0.327, 0.418, -0.075 ] } }, { "index": 277, "index_chain": 277, "chain_name": "A", "nt_resnum": 279, "nt_name": "A", "nt_code": "A", "nt_id": "///A/279", "linked_nts": [ "///A/278", "///A/280" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -27.126, "beta": 135.253, "gamma": 44.409, "delta": 79.798, "epsilon": -105.650, "zeta": -112.736, "epsilon_zeta": 7.086, "bb_type": "--", "chi": -178.113, "glyco_bond": "anti", "C5prime_xyz": [ -1.434, 8.370, 1.572 ], "P_xyz": [ 1.167, 8.156, 1.658 ], "form": "A", "ssZp": 4.674, "Dp": 4.795, "splay_angle": 20.445, "splay_distance": 3.109, "splay_ratio": 0.178, "d22": null, "d64": null, "eta": -178.559, "theta": -141.480, "eta_prime": -170.417, "theta_prime": -140.174, "eta_base": -140.397, "theta_base": -115.940, "v0": 4.844, "v1": -27.157, "v2": 38.038, "v3": -36.271, "v4": 19.819, "amplitude": 38.835, "phase_angle": 11.628, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.179, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 172.578, 271.211, 180.372 ], "x_axis": [ 0.391, -0.036, -0.920 ], "y_axis": [ -0.400, 0.894, -0.205 ], "z_axis": [ 0.829, 0.447, 0.335 ], "quaternion": [ 0.809, -0.201, 0.540, 0.112 ] } }, { "index": 278, "index_chain": 278, "chain_name": "A", "nt_resnum": 280, "nt_name": "G", "nt_code": "G", "nt_id": "///A/280", "linked_nts": [ "///A/279", "///A/281" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -50.507, "beta": 123.702, "gamma": 60.847, "delta": 78.631, "epsilon": -155.421, "zeta": -60.178, "epsilon_zeta": -95.243, "bb_type": "BI", "chi": -178.054, "glyco_bond": "anti", "C5prime_xyz": [ -1.744, 8.492, 1.525 ], "P_xyz": [ 0.789, 8.624, 0.903 ], "form": ".", "ssZp": 4.609, "Dp": 4.620, "splay_angle": 37.646, "splay_distance": 5.334, "splay_ratio": 0.323, "d22": null, "d64": null, "eta": 151.808, "theta": -130.808, "eta_prime": 172.119, "theta_prime": -121.124, "eta_base": -139.932, "theta_base": -108.865, "v0": 2.244, "v1": -25.496, "v2": 37.894, "v3": -37.607, "v4": 22.252, "amplitude": 39.305, "phase_angle": 15.397, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.611, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 175.582, 271.672, 181.030 ], "x_axis": [ 0.033, 0.371, -0.928 ], "y_axis": [ -0.446, 0.836, 0.319 ], "z_axis": [ 0.894, 0.403, 0.193 ], "quaternion": [ 0.718, -0.030, 0.635, 0.284 ] } }, { "index": 279, "index_chain": 279, "chain_name": "A", "nt_resnum": 281, "nt_name": "A", "nt_code": "A", "nt_id": "///A/281", "linked_nts": [ "///A/280", "///A/282" ], "nt_type": "RNA", "dbn": "(", "summary": "~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -93.930, "beta": -111.042, "gamma": 78.652, "delta": 154.747, "epsilon": -64.581, "zeta": 118.091, "epsilon_zeta": 177.328, "bb_type": "--", "chi": -71.472, "glyco_bond": "--", "C5prime_xyz": [ -3.132, 6.861, -2.874 ], "P_xyz": [ -0.705, 7.843, -2.697 ], "form": ".", "ssZp": 0.125, "Dp": 0.165, "splay_angle": 17.306, "splay_distance": 3.094, "splay_ratio": 0.155, "d22": null, "d64": null, "eta": -137.501, "theta": -141.042, "eta_prime": -114.101, "theta_prime": -172.256, "eta_base": -107.803, "theta_base": -138.122, "v0": -20.044, "v1": 36.800, "v2": -38.404, "v3": 27.930, "v4": -5.148, "amplitude": 39.172, "phase_angle": 168.631, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.025, "filter_rmsd": 0.033, "frame": { "rmsd": 0.017, "origin": [ 180.413, 273.775, 180.202 ], "x_axis": [ -0.285, 0.744, -0.605 ], "y_axis": [ -0.134, 0.594, 0.793 ], "z_axis": [ 0.949, 0.308, -0.069 ], "quaternion": [ 0.556, 0.218, 0.698, 0.394 ] } }, { "index": 280, "index_chain": 280, "chain_name": "A", "nt_resnum": 282, "nt_name": "G", "nt_code": "G", "nt_id": "///A/282", "linked_nts": [ "///A/281", "///A/283" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -9.173, "beta": 115.214, "gamma": -46.907, "delta": 148.241, "epsilon": -161.893, "zeta": -144.696, "epsilon_zeta": -17.197, "bb_type": "--", "chi": -73.380, "glyco_bond": "anti", "C5prime_xyz": [ -3.163, 7.172, -2.846 ], "P_xyz": [ -2.256, 9.622, -3.123 ], "form": "B", "ssZp": 1.789, "Dp": 2.114, "splay_angle": 19.709, "splay_distance": 3.479, "splay_ratio": 0.172, "d22": null, "d64": null, "eta": 151.257, "theta": -153.598, "eta_prime": 159.996, "theta_prime": -175.959, "eta_base": -168.264, "theta_base": -120.108, "v0": -24.002, "v1": 38.420, "v2": -37.278, "v3": 24.344, "v4": -0.450, "amplitude": 39.231, "phase_angle": 161.842, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 183.457, 273.849, 179.649 ], "x_axis": [ -0.331, 0.906, -0.262 ], "y_axis": [ 0.008, 0.281, 0.960 ], "z_axis": [ 0.944, 0.316, -0.100 ], "quaternion": [ 0.461, 0.349, 0.654, 0.487 ] } }, { "index": 281, "index_chain": 281, "chain_name": "A", "nt_resnum": 283, "nt_name": "G", "nt_code": "G", "nt_id": "///A/283", "linked_nts": [ "///A/282", "///A/284" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,phosphate", "alpha": 84.826, "beta": -119.531, "gamma": -155.769, "delta": 81.976, "epsilon": -146.983, "zeta": -75.928, "epsilon_zeta": -71.056, "bb_type": "BI", "chi": -160.876, "glyco_bond": "anti", "C5prime_xyz": [ -1.414, 8.770, 0.564 ], "P_xyz": [ -0.807, 10.149, -1.591 ], "form": ".", "ssZp": 4.418, "Dp": 4.622, "splay_angle": 21.287, "splay_distance": 3.300, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": 167.649, "theta": 178.885, "eta_prime": 164.039, "theta_prime": -174.147, "eta_base": -128.067, "theta_base": -123.145, "v0": 1.884, "v1": -23.886, "v2": 35.524, "v3": -35.361, "v4": 21.141, "amplitude": 36.901, "phase_angle": 15.700, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "4n", "suiteness": 0.369, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 185.667, 276.525, 179.402 ], "x_axis": [ -0.305, 0.896, 0.322 ], "y_axis": [ 0.227, -0.260, 0.938 ], "z_axis": [ 0.925, 0.359, -0.124 ], "quaternion": [ 0.279, 0.520, 0.541, 0.600 ] } }, { "index": 282, "index_chain": 282, "chain_name": "A", "nt_resnum": 284, "nt_name": "C", "nt_code": "C", "nt_id": "///A/284", "linked_nts": [ "///A/283", "///A/285" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor", "alpha": -62.565, "beta": 156.990, "gamma": 62.099, "delta": 81.770, "epsilon": 161.327, "zeta": 28.955, "epsilon_zeta": 132.372, "bb_type": "--", "chi": -154.741, "glyco_bond": "anti", "C5prime_xyz": [ -1.106, 8.713, 0.236 ], "P_xyz": [ 1.452, 8.713, -0.373 ], "form": ".", "ssZp": 4.117, "Dp": 4.205, "splay_angle": 84.715, "splay_distance": 11.717, "splay_ratio": 0.674, "d22": 8.103, "d64": 10.881, "eta": 162.054, "theta": -55.683, "eta_prime": -169.922, "theta_prime": -124.522, "eta_base": -101.774, "theta_base": 172.268, "v0": 5.835, "v1": -26.906, "v2": 36.639, "v3": -34.231, "v4": 17.997, "amplitude": 37.182, "phase_angle": 9.805, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.781, "filter_rmsd": 0.068, "frame": { "rmsd": 0.006, "origin": [ 187.699, 279.117, 179.597 ], "x_axis": [ 0.039, 0.546, 0.837 ], "y_axis": [ 0.557, -0.707, 0.436 ], "z_axis": [ 0.829, 0.450, -0.332 ], "quaternion": [ -0.005, 0.721, 0.383, 0.578 ] } }, { "index": 283, "index_chain": 283, "chain_name": "A", "nt_resnum": 285, "nt_name": "U", "nt_code": "U", "nt_id": "///A/285", "linked_nts": [ "///A/284", "///A/286" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate", "alpha": 104.927, "beta": 128.436, "gamma": 49.439, "delta": 81.099, "epsilon": -121.833, "zeta": -129.047, "epsilon_zeta": 7.215, "bb_type": "--", "chi": -145.251, "glyco_bond": "anti", "C5prime_xyz": [ -1.408, 8.731, -0.367 ], "P_xyz": [ 1.045, 8.337, -1.214 ], "form": ".", "ssZp": 3.632, "Dp": 4.733, "splay_angle": 57.235, "splay_distance": 8.894, "splay_ratio": 0.479, "d22": 6.784, "d64": 7.304, "eta": -26.134, "theta": 177.434, "eta_prime": 28.600, "theta_prime": 178.629, "eta_base": 22.053, "theta_base": 165.429, "v0": 2.106, "v1": -24.137, "v2": 35.795, "v3": -35.581, "v4": 21.080, "amplitude": 37.134, "phase_angle": 15.435, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "5d", "suiteness": 0.010, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 194.243, 276.330, 170.286 ], "x_axis": [ -0.448, -0.890, -0.080 ], "y_axis": [ 0.009, -0.094, 0.996 ], "z_axis": [ -0.894, 0.446, 0.050 ], "quaternion": [ -0.356, -0.386, 0.571, 0.631 ] } }, { "index": 284, "index_chain": 284, "chain_name": "A", "nt_resnum": 286, "nt_name": "U", "nt_code": "U", "nt_id": "///A/286", "linked_nts": [ "///A/285", "///A/287" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,phosphate", "alpha": -116.709, "beta": 163.445, "gamma": 66.295, "delta": 79.003, "epsilon": 173.738, "zeta": 25.723, "epsilon_zeta": 148.015, "bb_type": "--", "chi": -169.326, "glyco_bond": "anti", "C5prime_xyz": [ -1.282, 8.568, 1.067 ], "P_xyz": [ 1.294, 8.912, 0.730 ], "form": ".", "ssZp": 4.464, "Dp": 4.432, "splay_angle": 58.816, "splay_distance": 8.434, "splay_ratio": 0.492, "d22": null, "d64": null, "eta": 141.451, "theta": -75.828, "eta_prime": 137.211, "theta_prime": -86.439, "eta_base": 134.141, "theta_base": -43.115, "v0": 5.254, "v1": -28.012, "v2": 38.851, "v3": -36.850, "v4": 19.928, "amplitude": 39.595, "phase_angle": 11.124, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.107, "frame": { "rmsd": 0.004, "origin": [ 191.198, 284.466, 172.194 ], "x_axis": [ 0.409, -0.773, -0.485 ], "y_axis": [ 0.093, -0.494, 0.865 ], "z_axis": [ -0.908, -0.399, -0.130 ], "quaternion": [ 0.443, 0.713, -0.238, -0.489 ] } }, { "index": 285, "index_chain": 285, "chain_name": "A", "nt_resnum": 287, "nt_name": "G", "nt_code": "G", "nt_id": "///A/287", "linked_nts": [ "///A/286", "///A/288" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,phosphate", "alpha": -165.513, "beta": 162.110, "gamma": 100.749, "delta": 83.079, "epsilon": -154.671, "zeta": -32.094, "epsilon_zeta": -122.577, "bb_type": "BI", "chi": 170.575, "glyco_bond": "anti", "C5prime_xyz": [ -1.134, 7.917, 2.153 ], "P_xyz": [ 1.328, 8.612, 1.566 ], "form": ".", "ssZp": 4.576, "Dp": 4.689, "splay_angle": 52.133, "splay_distance": 7.115, "splay_ratio": 0.441, "d22": null, "d64": null, "eta": 129.036, "theta": -84.977, "eta_prime": -176.786, "theta_prime": -93.728, "eta_base": -76.935, "theta_base": -39.932, "v0": 11.812, "v1": -32.310, "v2": 39.472, "v3": -33.693, "v4": 13.798, "amplitude": 39.488, "phase_angle": 1.589, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 190.751, 276.238, 173.994 ], "x_axis": [ 0.089, -0.396, 0.914 ], "y_axis": [ -0.363, 0.841, 0.400 ], "z_axis": [ -0.927, -0.368, -0.069 ], "quaternion": [ 0.682, 0.281, -0.675, -0.012 ] } }, { "index": 286, "index_chain": 286, "chain_name": "A", "nt_resnum": 288, "nt_name": "C", "nt_code": "C", "nt_id": "///A/288", "linked_nts": [ "///A/287", "///A/289" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,cap-donor", "alpha": -160.334, "beta": -139.730, "gamma": 94.644, "delta": 76.716, "epsilon": 71.822, "zeta": 85.271, "epsilon_zeta": -13.449, "bb_type": "--", "chi": -170.443, "glyco_bond": "anti", "C5prime_xyz": [ -1.094, 8.562, 1.182 ], "P_xyz": [ 1.503, 8.193, 1.356 ], "form": ".", "ssZp": 3.174, "Dp": 3.264, "splay_angle": 23.331, "splay_distance": 3.768, "splay_ratio": 0.204, "d22": 5.448, "d64": 4.555, "eta": 157.411, "theta": -130.752, "eta_prime": -153.200, "theta_prime": -133.237, "eta_base": -58.835, "theta_base": -124.244, "v0": 6.770, "v1": -28.551, "v2": 38.572, "v3": -35.587, "v4": 18.250, "amplitude": 39.039, "phase_angle": 8.865, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.072, "frame": { "rmsd": 0.012, "origin": [ 186.676, 276.860, 179.794 ], "x_axis": [ -0.362, 0.881, 0.306 ], "y_axis": [ -0.061, 0.305, -0.950 ], "z_axis": [ -0.930, -0.362, -0.056 ], "quaternion": [ -0.471, 0.312, 0.656, -0.500 ] } }, { "index": 287, "index_chain": 287, "chain_name": "A", "nt_resnum": 289, "nt_name": "C", "nt_code": "C", "nt_id": "///A/289", "linked_nts": [ "///A/288", "///A/290" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -158.588, "beta": 176.870, "gamma": 76.247, "delta": 148.263, "epsilon": -172.522, "zeta": -116.779, "epsilon_zeta": -55.742, "bb_type": "BI", "chi": -119.085, "glyco_bond": "anti", "C5prime_xyz": [ -1.474, 8.571, -1.263 ], "P_xyz": [ 1.123, 8.841, -1.068 ], "form": ".", "ssZp": 1.813, "Dp": 1.939, "splay_angle": 18.545, "splay_distance": 3.316, "splay_ratio": 0.167, "d22": 3.880, "d64": 3.718, "eta": 149.641, "theta": -104.312, "eta_prime": -160.599, "theta_prime": -144.195, "eta_base": -141.140, "theta_base": -106.588, "v0": -20.501, "v1": 36.108, "v2": -37.207, "v3": 26.196, "v4": -3.769, "amplitude": 38.201, "phase_angle": 166.902, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.071, "frame": { "rmsd": 0.009, "origin": [ 184.047, 274.162, 179.880 ], "x_axis": [ -0.293, 0.937, -0.191 ], "y_axis": [ 0.027, -0.191, -0.981 ], "z_axis": [ -0.956, -0.293, 0.031 ], "quaternion": [ 0.370, -0.466, -0.517, 0.615 ] } }, { "index": 288, "index_chain": 288, "chain_name": "A", "nt_resnum": 290, "nt_name": "U", "nt_code": "U", "nt_id": "///A/290", "linked_nts": [ "///A/289", "///A/291" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": 131.302, "beta": -161.576, "gamma": -169.443, "delta": 146.041, "epsilon": -169.809, "zeta": -85.892, "epsilon_zeta": -83.917, "bb_type": "BI", "chi": -141.098, "glyco_bond": "anti", "C5prime_xyz": [ -2.136, 8.744, -0.104 ], "P_xyz": [ -0.520, 10.242, -1.534 ], "form": ".", "ssZp": 1.986, "Dp": 2.239, "splay_angle": 22.331, "splay_distance": 4.152, "splay_ratio": 0.213, "d22": 4.957, "d64": 5.045, "eta": 173.984, "theta": -158.792, "eta_prime": -164.337, "theta_prime": -170.393, "eta_base": -116.854, "theta_base": -135.832, "v0": -24.925, "v1": 38.708, "v2": -36.867, "v3": 23.345, "v4": 0.745, "amplitude": 39.204, "phase_angle": 160.119, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.108, "frame": { "rmsd": 0.009, "origin": [ 180.785, 274.069, 180.465 ], "x_axis": [ -0.167, 0.693, -0.701 ], "y_axis": [ 0.170, -0.680, -0.713 ], "z_axis": [ -0.971, -0.239, -0.004 ], "quaternion": [ 0.193, -0.616, -0.351, 0.679 ] } }, { "index": 289, "index_chain": 289, "chain_name": "A", "nt_resnum": 291, "nt_name": "C", "nt_code": "C", "nt_id": "///A/291", "linked_nts": [ "///A/290", "///A/292" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -80.074, "beta": -149.583, "gamma": 0.502, "delta": 79.429, "epsilon": -106.070, "zeta": -132.422, "epsilon_zeta": 26.352, "bb_type": "--", "chi": -133.760, "glyco_bond": "anti", "C5prime_xyz": [ -1.500, 8.699, -1.050 ], "P_xyz": [ 0.149, 10.622, -0.384 ], "form": ".", "ssZp": 2.660, "Dp": 4.731, "splay_angle": 32.538, "splay_distance": 5.353, "splay_ratio": 0.293, "d22": 4.346, "d64": 3.748, "eta": 137.624, "theta": 169.414, "eta_prime": 142.329, "theta_prime": -171.216, "eta_base": -173.437, "theta_base": -137.705, "v0": 0.178, "v1": -23.001, "v2": 35.776, "v3": -36.666, "v4": 23.021, "amplitude": 37.691, "phase_angle": 18.343, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.006, "origin": [ 176.984, 274.936, 181.894 ], "x_axis": [ -0.017, 0.148, -0.989 ], "y_axis": [ 0.337, -0.930, -0.145 ], "z_axis": [ -0.941, -0.335, -0.034 ], "quaternion": [ 0.068, 0.698, 0.174, -0.692 ] } }, { "index": 290, "index_chain": 290, "chain_name": "A", "nt_resnum": 292, "nt_name": "U", "nt_code": "U", "nt_id": "///A/292", "linked_nts": [ "///A/291", "///A/293" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -50.158, "beta": 115.184, "gamma": 65.824, "delta": 84.264, "epsilon": -157.136, "zeta": -68.164, "epsilon_zeta": -88.972, "bb_type": "BI", "chi": -158.951, "glyco_bond": "anti", "C5prime_xyz": [ -1.353, 8.715, 0.467 ], "P_xyz": [ 0.999, 8.252, -0.583 ], "form": "A", "ssZp": 4.265, "Dp": 4.481, "splay_angle": 18.998, "splay_distance": 3.124, "splay_ratio": 0.168, "d22": 4.151, "d64": 4.218, "eta": 161.735, "theta": -131.052, "eta_prime": 179.398, "theta_prime": -148.582, "eta_base": -154.015, "theta_base": -138.571, "v0": 1.837, "v1": -22.782, "v2": 33.870, "v3": -33.738, "v4": 20.148, "amplitude": 35.179, "phase_angle": 15.683, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.122, "filter_rmsd": 0.108, "frame": { "rmsd": 0.007, "origin": [ 172.894, 271.718, 180.643 ], "x_axis": [ 0.525, 0.079, -0.847 ], "y_axis": [ 0.468, -0.858, 0.211 ], "z_axis": [ -0.710, -0.507, -0.488 ], "quaternion": [ 0.212, 0.847, 0.161, -0.460 ] } }, { "index": 291, "index_chain": 291, "chain_name": "A", "nt_resnum": 293, "nt_name": "U", "nt_code": "U", "nt_id": "///A/293", "linked_nts": [ "///A/292", "///A/294" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.792, "beta": 169.905, "gamma": 54.014, "delta": 78.100, "epsilon": -175.749, "zeta": -86.997, "epsilon_zeta": -88.752, "bb_type": "BI", "chi": -159.831, "glyco_bond": "anti", "C5prime_xyz": [ -1.655, 8.821, 0.472 ], "P_xyz": [ 0.862, 9.539, 0.567 ], "form": "A", "ssZp": 4.330, "Dp": 4.390, "splay_angle": 26.256, "splay_distance": 3.998, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 161.480, "theta": -148.930, "eta_prime": 178.666, "theta_prime": -152.485, "eta_base": -143.097, "theta_base": -119.671, "v0": -1.444, "v1": -22.092, "v2": 35.939, "v3": -37.755, "v4": 24.679, "amplitude": 38.418, "phase_angle": 20.696, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.918, "filter_rmsd": 0.101, "frame": { "rmsd": 0.005, "origin": [ 170.403, 271.656, 178.758 ], "x_axis": [ 0.700, -0.315, -0.641 ], "y_axis": [ 0.097, -0.847, 0.523 ], "z_axis": [ -0.707, -0.429, -0.562 ], "quaternion": [ 0.270, 0.882, -0.062, -0.382 ] } }, { "index": 292, "index_chain": 292, "chain_name": "A", "nt_resnum": 294, "nt_name": "G", "nt_code": "G", "nt_id": "///A/294", "linked_nts": [ "///A/293", "///A/295" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -171.889, "beta": -141.603, "gamma": 130.714, "delta": 79.285, "epsilon": -102.719, "zeta": -98.982, "epsilon_zeta": -3.737, "bb_type": "--", "chi": 172.632, "glyco_bond": "anti", "C5prime_xyz": [ -1.490, 8.185, 2.091 ], "P_xyz": [ 1.047, 8.642, 1.664 ], "form": "A", "ssZp": 4.823, "Dp": 4.807, "splay_angle": 24.395, "splay_distance": 3.819, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 165.713, "theta": -141.362, "eta_prime": 173.912, "theta_prime": -141.508, "eta_base": -141.514, "theta_base": -119.609, "v0": 4.793, "v1": -27.140, "v2": 38.026, "v3": -36.311, "v4": 19.867, "amplitude": 38.833, "phase_angle": 11.704, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 168.291, 270.548, 175.551 ], "x_axis": [ 0.782, -0.621, -0.047 ], "y_axis": [ -0.291, -0.431, 0.854 ], "z_axis": [ -0.551, -0.654, -0.518 ], "quaternion": [ 0.456, 0.826, -0.276, -0.181 ] } }, { "index": 293, "index_chain": 293, "chain_name": "A", "nt_resnum": 295, "nt_name": "G", "nt_code": "G", "nt_id": "///A/295", "linked_nts": [ "///A/294", "///A/296" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -66.883, "beta": 123.594, "gamma": 91.409, "delta": 82.236, "epsilon": -161.267, "zeta": -40.918, "epsilon_zeta": -120.349, "bb_type": "BI", "chi": 161.033, "glyco_bond": "anti", "C5prime_xyz": [ -2.317, 8.178, 2.368 ], "P_xyz": [ 0.180, 8.942, 2.288 ], "form": ".", "ssZp": 3.458, "Dp": 4.256, "splay_angle": 22.718, "splay_distance": 3.454, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 162.937, "theta": -103.922, "eta_prime": -171.666, "theta_prime": -117.200, "eta_base": -126.312, "theta_base": -59.229, "v0": -5.717, "v1": -16.565, "v2": 31.081, "v3": -35.260, "v4": 25.834, "amplitude": 35.108, "phase_angle": 27.712, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.047, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 167.664, 268.642, 172.301 ], "x_axis": [ 0.656, -0.549, 0.518 ], "y_axis": [ -0.619, 0.002, 0.785 ], "z_axis": [ -0.432, -0.836, -0.338 ], "quaternion": [ 0.574, 0.706, -0.414, 0.031 ] } }, { "index": 294, "index_chain": 294, "chain_name": "A", "nt_resnum": 296, "nt_name": "G", "nt_code": "G", "nt_id": "///A/296", "linked_nts": [ "///A/295", "///A/297" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -130.216, "beta": -127.259, "gamma": 52.813, "delta": 86.735, "epsilon": 157.026, "zeta": -74.239, "epsilon_zeta": -128.735, "bb_type": "BI", "chi": -120.815, "glyco_bond": "anti", "C5prime_xyz": [ -1.324, 8.312, -1.594 ], "P_xyz": [ 1.155, 8.808, -0.864 ], "form": ".", "ssZp": 2.886, "Dp": 3.946, "splay_angle": 20.244, "splay_distance": 3.416, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": 140.950, "theta": -142.109, "eta_prime": 172.301, "theta_prime": -142.336, "eta_base": -102.970, "theta_base": -101.004, "v0": 5.864, "v1": -23.873, "v2": 31.808, "v3": -29.349, "v4": 14.927, "amplitude": 32.157, "phase_angle": 8.448, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 167.374, 265.275, 173.015 ], "x_axis": [ -0.308, -0.205, 0.929 ], "y_axis": [ -0.912, 0.343, -0.227 ], "z_axis": [ -0.272, -0.917, -0.292 ], "quaternion": [ -0.431, -0.401, 0.697, -0.410 ] } }, { "index": 295, "index_chain": 295, "chain_name": "A", "nt_resnum": 297, "nt_name": "G", "nt_code": "G", "nt_id": "///A/297", "linked_nts": [ "///A/296", "///A/298" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -177.871, "beta": -119.185, "gamma": 119.696, "delta": 78.626, "epsilon": -98.551, "zeta": -100.016, "epsilon_zeta": 1.464, "bb_type": "--", "chi": -136.463, "glyco_bond": "anti", "C5prime_xyz": [ -1.570, 8.796, -0.912 ], "P_xyz": [ 0.696, 8.258, -2.102 ], "form": ".", "ssZp": 2.653, "Dp": 4.656, "splay_angle": 39.328, "splay_distance": 6.921, "splay_ratio": 0.337, "d22": null, "d64": null, "eta": 172.469, "theta": -136.748, "eta_prime": -175.837, "theta_prime": -160.553, "eta_base": -129.855, "theta_base": 153.037, "v0": -1.909, "v1": -21.500, "v2": 35.494, "v3": -37.547, "v4": 24.855, "amplitude": 38.122, "phase_angle": 21.400, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 165.092, 262.741, 172.810 ], "x_axis": [ -0.746, 0.038, 0.664 ], "y_axis": [ -0.650, 0.172, -0.740 ], "z_axis": [ -0.143, -0.984, -0.104 ], "quaternion": [ -0.284, -0.215, 0.711, -0.606 ] } }, { "index": 296, "index_chain": 296, "chain_name": "A", "nt_resnum": 298, "nt_name": "U", "nt_code": "U", "nt_id": "///A/298", "linked_nts": [ "///A/297", "///A/299" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop", "alpha": 14.001, "beta": -92.332, "gamma": -111.413, "delta": 140.345, "epsilon": -62.833, "zeta": -140.659, "epsilon_zeta": 77.826, "bb_type": "--", "chi": -137.538, "glyco_bond": "anti", "C5prime_xyz": [ -1.317, 8.636, -0.327 ], "P_xyz": [ -1.241, 10.106, -2.499 ], "form": ".", "ssZp": 0.263, "Dp": 0.922, "splay_angle": 63.952, "splay_distance": 10.349, "splay_ratio": 0.532, "d22": 7.663, "d64": 8.431, "eta": -147.940, "theta": 102.699, "eta_prime": -169.375, "theta_prime": 113.697, "eta_base": 150.254, "theta_base": 98.499, "v0": -17.291, "v1": 29.694, "v2": -30.148, "v3": 20.963, "v4": -2.503, "amplitude": 31.101, "phase_angle": 165.777, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.108, "frame": { "rmsd": 0.006, "origin": [ 168.547, 258.254, 168.831 ], "x_axis": [ -0.076, 0.530, 0.844 ], "y_axis": [ -0.955, 0.204, -0.214 ], "z_axis": [ -0.286, -0.823, 0.491 ], "quaternion": [ 0.636, 0.239, -0.444, 0.584 ] } }, { "index": 297, "index_chain": 297, "chain_name": "A", "nt_resnum": 299, "nt_name": "U", "nt_code": "U", "nt_id": "///A/299", "linked_nts": [ "///A/298", "///A/300" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-stack,non-canonical,non-pair-contact,multiplet,junction-loop", "alpha": -72.558, "beta": -81.518, "gamma": -152.328, "delta": 152.912, "epsilon": -144.502, "zeta": -102.194, "epsilon_zeta": -42.308, "bb_type": "BI", "chi": -141.865, "glyco_bond": "anti", "C5prime_xyz": [ -1.432, 8.530, 0.111 ], "P_xyz": [ -0.249, 8.889, -2.213 ], "form": ".", "ssZp": 1.639, "Dp": 1.694, "splay_angle": 35.917, "splay_distance": 6.000, "splay_ratio": 0.308, "d22": null, "d64": null, "eta": -161.259, "theta": 141.975, "eta_prime": 156.848, "theta_prime": -173.777, "eta_base": 147.518, "theta_base": -166.463, "v0": -14.543, "v1": 31.764, "v2": -35.895, "v3": 28.439, "v4": -8.914, "amplitude": 36.013, "phase_angle": 175.366, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.005, "origin": [ 168.316, 259.455, 158.554 ], "x_axis": [ 0.469, 0.049, 0.882 ], "y_axis": [ -0.758, -0.490, 0.430 ], "z_axis": [ 0.453, -0.871, -0.192 ], "quaternion": [ 0.444, 0.733, -0.242, 0.455 ] } }, { "index": 298, "index_chain": 298, "chain_name": "A", "nt_resnum": 300, "nt_name": "G", "nt_code": "G", "nt_id": "///A/300", "linked_nts": [ "///A/299", "///A/301" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C2'-endo,BII,isolated-canonical,non-pair-contact,helix,junction-loop", "alpha": -84.401, "beta": -149.085, "gamma": 33.022, "delta": 146.873, "epsilon": -89.994, "zeta": 149.178, "epsilon_zeta": 120.828, "bb_type": "BII", "chi": -80.042, "glyco_bond": "anti", "C5prime_xyz": [ -2.541, 7.344, -2.843 ], "P_xyz": [ -0.732, 9.214, -3.195 ], "form": ".", "ssZp": -0.021, "Dp": 0.708, "splay_angle": 72.636, "splay_distance": 12.529, "splay_ratio": 0.593, "d22": null, "d64": null, "eta": -173.278, "theta": 147.314, "eta_prime": -157.985, "theta_prime": 124.572, "eta_base": -155.167, "theta_base": 108.090, "v0": -19.662, "v1": 34.503, "v2": -35.451, "v3": 24.948, "v4": -3.559, "amplitude": 36.418, "phase_angle": 166.767, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.010, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 169.813, 256.334, 153.653 ], "x_axis": [ 0.375, -0.208, 0.903 ], "y_axis": [ -0.813, -0.541, 0.213 ], "z_axis": [ 0.445, -0.815, -0.372 ], "quaternion": [ 0.340, 0.756, -0.338, 0.446 ] } }, { "index": 299, "index_chain": 299, "chain_name": "A", "nt_resnum": 301, "nt_name": "U", "nt_code": "U", "nt_id": "///A/301", "linked_nts": [ "///A/300", "///A/302" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -113.712, "beta": 167.500, "gamma": -76.458, "delta": 77.378, "epsilon": -148.208, "zeta": 44.696, "epsilon_zeta": 167.096, "bb_type": "--", "chi": -166.987, "glyco_bond": "anti", "C5prime_xyz": [ -1.198, 8.548, 0.920 ], "P_xyz": [ -0.357, 10.601, 2.320 ], "form": ".", "ssZp": 4.612, "Dp": 4.700, "splay_angle": 89.196, "splay_distance": 12.951, "splay_ratio": 0.706, "d22": null, "d64": null, "eta": 47.326, "theta": -75.222, "eta_prime": 25.931, "theta_prime": -88.710, "eta_base": 42.173, "theta_base": -112.802, "v0": 7.305, "v1": -30.460, "v2": 41.004, "v3": -37.801, "v4": 19.098, "amplitude": 41.473, "phase_angle": 8.622, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "0k", "suiteness": 0.010, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 161.989, 262.966, 146.456 ], "x_axis": [ -0.283, 0.406, 0.869 ], "y_axis": [ -0.328, -0.892, 0.310 ], "z_axis": [ 0.901, -0.197, 0.386 ], "quaternion": [ 0.229, 0.553, 0.035, 0.800 ] } }, { "index": 300, "index_chain": 300, "chain_name": "A", "nt_resnum": 302, "nt_name": "A", "nt_code": "A", "nt_id": "///A/302", "linked_nts": [ "///A/301", "///A/303" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,phosphate,splayed-apart", "alpha": -106.600, "beta": -150.254, "gamma": -173.282, "delta": 82.131, "epsilon": -177.726, "zeta": -77.322, "epsilon_zeta": -100.404, "bb_type": "BI", "chi": -131.968, "glyco_bond": "anti", "C5prime_xyz": [ -2.307, 8.581, -1.192 ], "P_xyz": [ -2.029, 9.189, -3.753 ], "form": ".", "ssZp": 3.467, "Dp": 4.225, "splay_angle": 26.577, "splay_distance": 4.311, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": -47.940, "theta": 157.173, "eta_prime": -1.089, "theta_prime": 158.311, "eta_base": 35.379, "theta_base": -176.799, "v0": -5.024, "v1": -17.722, "v2": 32.193, "v3": -35.924, "v4": 25.879, "amplitude": 35.930, "phase_angle": 26.363, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.043, "frame": { "rmsd": 0.018, "origin": [ 170.742, 259.434, 155.324 ], "x_axis": [ 0.677, 0.475, -0.563 ], "y_axis": [ -0.650, 0.028, -0.759 ], "z_axis": [ -0.345, 0.880, 0.328 ], "quaternion": [ 0.713, -0.575, 0.076, 0.395 ] } }, { "index": 301, "index_chain": 301, "chain_name": "A", "nt_resnum": 303, "nt_name": "G", "nt_code": "G", "nt_id": "///A/303", "linked_nts": [ "///A/302", "///A/304" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -76.973, "beta": 164.394, "gamma": 74.628, "delta": 80.575, "epsilon": 155.414, "zeta": 36.702, "epsilon_zeta": 118.712, "bb_type": "--", "chi": -158.869, "glyco_bond": "anti", "C5prime_xyz": [ -1.303, 8.814, 0.474 ], "P_xyz": [ 1.246, 9.186, -0.021 ], "form": "A", "ssZp": 3.945, "Dp": 4.011, "splay_angle": 21.775, "splay_distance": 3.740, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 171.198, "theta": -103.828, "eta_prime": -173.744, "theta_prime": -134.493, "eta_base": -140.002, "theta_base": -107.282, "v0": 0.551, "v1": -22.338, "v2": 34.356, "v3": -35.001, "v4": 21.797, "amplitude": 36.079, "phase_angle": 17.781, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.191, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 169.403, 262.990, 157.360 ], "x_axis": [ 0.376, 0.367, -0.851 ], "y_axis": [ -0.847, -0.237, -0.476 ], "z_axis": [ -0.376, 0.900, 0.222 ], "quaternion": [ 0.583, -0.590, 0.204, 0.520 ] } }, { "index": 302, "index_chain": 302, "chain_name": "A", "nt_resnum": 304, "nt_name": "G", "nt_code": "G", "nt_id": "///A/304", "linked_nts": [ "///A/303", "///A/305" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,phosphate", "alpha": -176.220, "beta": 94.608, "gamma": 145.102, "delta": 84.932, "epsilon": -120.785, "zeta": -97.375, "epsilon_zeta": -23.410, "bb_type": "--", "chi": 169.810, "glyco_bond": "anti", "C5prime_xyz": [ -1.132, 7.930, 2.256 ], "P_xyz": [ -0.312, 9.992, 0.885 ], "form": "A", "ssZp": 4.781, "Dp": 4.784, "splay_angle": 29.042, "splay_distance": 4.216, "splay_ratio": 0.251, "d22": null, "d64": null, "eta": 153.671, "theta": 177.146, "eta_prime": 170.367, "theta_prime": -168.876, "eta_base": -134.538, "theta_base": -129.065, "v0": 8.240, "v1": -27.692, "v2": 35.622, "v3": -31.880, "v4": 14.955, "amplitude": 35.798, "phase_angle": 5.679, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 169.929, 266.691, 157.242 ], "x_axis": [ -0.126, 0.116, -0.985 ], "y_axis": [ -0.912, -0.405, 0.069 ], "z_axis": [ -0.391, 0.907, 0.157 ], "quaternion": [ 0.395, -0.530, 0.376, 0.650 ] } }, { "index": 303, "index_chain": 303, "chain_name": "A", "nt_resnum": 305, "nt_name": "A", "nt_code": "A", "nt_id": "///A/305", "linked_nts": [ "///A/304", "///A/306" ], "nt_type": "RNA", "dbn": "(", "summary": "~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate", "alpha": -32.253, "beta": 145.847, "gamma": 39.959, "delta": 81.274, "epsilon": -127.140, "zeta": -52.158, "epsilon_zeta": -74.982, "bb_type": "--", "chi": 172.464, "glyco_bond": "--", "C5prime_xyz": [ -1.615, 8.122, 2.078 ], "P_xyz": [ 0.889, 7.893, 2.777 ], "form": ".", "ssZp": 4.716, "Dp": 4.753, "splay_angle": 39.975, "splay_distance": 5.887, "splay_ratio": 0.343, "d22": null, "d64": null, "eta": 170.265, "theta": -102.066, "eta_prime": -172.715, "theta_prime": -100.948, "eta_base": -122.246, "theta_base": -49.579, "v0": 4.352, "v1": -26.329, "v2": 37.136, "v3": -35.670, "v4": 19.712, "amplitude": 37.994, "phase_angle": 12.195, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.192, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 169.345, 270.852, 156.902 ], "x_axis": [ -0.639, -0.215, -0.739 ], "y_axis": [ -0.521, -0.585, 0.621 ], "z_axis": [ -0.566, 0.782, 0.261 ], "quaternion": [ 0.097, -0.414, 0.445, 0.788 ] } }, { "index": 304, "index_chain": 304, "chain_name": "A", "nt_resnum": 306, "nt_name": "C", "nt_code": "C", "nt_id": "///A/306", "linked_nts": [ "///A/305", "///A/307" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor,phosphate", "alpha": -67.836, "beta": -169.281, "gamma": 35.892, "delta": 82.583, "epsilon": -143.265, "zeta": -79.724, "epsilon_zeta": -63.541, "bb_type": "BI", "chi": -168.985, "glyco_bond": "anti", "C5prime_xyz": [ -0.911, 8.449, 1.119 ], "P_xyz": [ 1.432, 8.429, 2.303 ], "form": "A", "ssZp": 4.627, "Dp": 4.706, "splay_angle": 22.420, "splay_distance": 3.482, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 152.729, "theta": -148.416, "eta_prime": 178.676, "theta_prime": -143.185, "eta_base": -99.126, "theta_base": -123.204, "v0": 7.717, "v1": -28.474, "v2": 37.464, "v3": -34.034, "v4": 16.577, "amplitude": 37.756, "phase_angle": 7.128, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.334, "filter_rmsd": 0.065, "frame": { "rmsd": 0.009, "origin": [ 163.592, 271.622, 155.918 ], "x_axis": [ -0.494, -0.800, 0.341 ], "y_axis": [ 0.555, 0.012, 0.832 ], "z_axis": [ -0.669, 0.600, 0.438 ], "quaternion": [ -0.489, -0.118, 0.517, 0.693 ] } }, { "index": 305, "index_chain": 305, "chain_name": "A", "nt_resnum": 307, "nt_name": "A", "nt_code": "A", "nt_id": "///A/307", "linked_nts": [ "///A/306", "///A/308" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -50.197, "beta": 165.673, "gamma": 45.547, "delta": 79.412, "epsilon": -142.014, "zeta": -113.788, "epsilon_zeta": -28.227, "bb_type": "--", "chi": -174.560, "glyco_bond": "anti", "C5prime_xyz": [ -1.516, 8.515, 1.351 ], "P_xyz": [ 0.988, 8.846, 2.004 ], "form": "A", "ssZp": 4.643, "Dp": 4.684, "splay_angle": 23.143, "splay_distance": 3.581, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 168.583, "theta": -149.300, "eta_prime": -179.662, "theta_prime": -143.676, "eta_base": -148.179, "theta_base": -115.369, "v0": 2.001, "v1": -24.886, "v2": 37.117, "v3": -36.955, "v4": 22.011, "amplitude": 38.553, "phase_angle": 15.686, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.722, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 160.520, 273.251, 155.739 ], "x_axis": [ -0.057, -0.811, 0.582 ], "y_axis": [ 0.726, 0.366, 0.582 ], "z_axis": [ -0.685, 0.456, 0.568 ], "quaternion": [ 0.685, 0.046, -0.462, -0.561 ] } }, { "index": 306, "index_chain": 306, "chain_name": "A", "nt_resnum": 308, "nt_name": "C", "nt_code": "C", "nt_id": "///A/308", "linked_nts": [ "///A/307", "///A/309" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 13.952, "beta": 124.454, "gamma": 14.134, "delta": 75.840, "epsilon": -170.152, "zeta": -86.868, "epsilon_zeta": -83.284, "bb_type": "BI", "chi": -162.000, "glyco_bond": "anti", "C5prime_xyz": [ -1.674, 8.867, 0.603 ], "P_xyz": [ 0.831, 8.967, 1.344 ], "form": "A", "ssZp": 4.434, "Dp": 4.472, "splay_angle": 26.325, "splay_distance": 4.241, "splay_ratio": 0.233, "d22": 4.579, "d64": 4.987, "eta": 169.314, "theta": -139.771, "eta_prime": -177.045, "theta_prime": -145.924, "eta_base": -135.641, "theta_base": -127.440, "v0": -2.280, "v1": -22.108, "v2": 36.833, "v3": -39.203, "v4": 26.091, "amplitude": 39.685, "phase_angle": 21.855, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.058, "frame": { "rmsd": 0.007, "origin": [ 157.188, 273.360, 157.047 ], "x_axis": [ 0.384, -0.505, 0.773 ], "y_axis": [ 0.620, 0.762, 0.189 ], "z_axis": [ -0.684, 0.407, 0.605 ], "quaternion": [ 0.829, -0.066, -0.440, -0.339 ] } }, { "index": 307, "index_chain": 307, "chain_name": "A", "nt_resnum": 309, "nt_name": "U", "nt_code": "U", "nt_id": "///A/309", "linked_nts": [ "///A/308", "///A/310" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 168.282, "beta": -154.160, "gamma": 164.258, "delta": 82.368, "epsilon": -95.392, "zeta": -136.986, "epsilon_zeta": 41.593, "bb_type": "--", "chi": 176.352, "glyco_bond": "anti", "C5prime_xyz": [ -1.172, 8.131, 1.904 ], "P_xyz": [ 0.884, 9.466, 1.002 ], "form": "A", "ssZp": 4.733, "Dp": 4.799, "splay_angle": 21.412, "splay_distance": 3.390, "splay_ratio": 0.188, "d22": 4.038, "d64": 4.081, "eta": 176.276, "theta": -142.836, "eta_prime": -178.233, "theta_prime": -148.128, "eta_base": -146.521, "theta_base": -121.732, "v0": 7.387, "v1": -28.370, "v2": 37.465, "v3": -34.222, "v4": 16.914, "amplitude": 37.797, "phase_angle": 7.597, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.452, "filter_rmsd": 0.104, "frame": { "rmsd": 0.006, "origin": [ 153.606, 273.043, 159.296 ], "x_axis": [ 0.676, -0.119, 0.727 ], "y_axis": [ 0.381, 0.901, -0.207 ], "z_axis": [ -0.631, 0.417, 0.654 ], "quaternion": [ 0.899, -0.174, -0.378, -0.139 ] } }, { "index": 308, "index_chain": 308, "chain_name": "A", "nt_resnum": 310, "nt_name": "C", "nt_code": "C", "nt_id": "///A/310", "linked_nts": [ "///A/309", "///A/311" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 107.691, "beta": -105.714, "gamma": 179.413, "delta": 81.049, "epsilon": -116.565, "zeta": -103.806, "epsilon_zeta": -12.759, "bb_type": "--", "chi": 168.390, "glyco_bond": "anti", "C5prime_xyz": [ -1.428, 8.069, 2.290 ], "P_xyz": [ 0.439, 9.226, 0.877 ], "form": "A", "ssZp": 4.726, "Dp": 4.767, "splay_angle": 25.131, "splay_distance": 3.803, "splay_ratio": 0.219, "d22": 3.997, "d64": 3.821, "eta": 150.907, "theta": -144.663, "eta_prime": 171.659, "theta_prime": -144.407, "eta_base": -144.169, "theta_base": -101.662, "v0": 5.041, "v1": -26.928, "v2": 37.449, "v3": -35.518, "v4": 19.171, "amplitude": 38.170, "phase_angle": 11.151, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.006, "origin": [ 151.937, 272.876, 162.242 ], "x_axis": [ 0.898, 0.268, 0.350 ], "y_axis": [ -0.082, 0.882, -0.464 ], "z_axis": [ -0.433, 0.388, 0.814 ], "quaternion": [ 0.948, -0.225, -0.207, 0.092 ] } }, { "index": 309, "index_chain": 309, "chain_name": "A", "nt_resnum": 311, "nt_name": "U", "nt_code": "U", "nt_id": "///A/311", "linked_nts": [ "///A/310", "///A/312" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": -6.452, "beta": 136.765, "gamma": 23.154, "delta": 81.785, "epsilon": 179.505, "zeta": -87.382, "epsilon_zeta": -93.113, "bb_type": "BI", "chi": -163.140, "glyco_bond": "anti", "C5prime_xyz": [ -1.462, 8.727, 0.708 ], "P_xyz": [ 1.057, 8.715, 1.459 ], "form": ".", "ssZp": 4.241, "Dp": 4.288, "splay_angle": 25.275, "splay_distance": 3.763, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 161.530, "theta": -161.585, "eta_prime": -173.521, "theta_prime": -147.947, "eta_base": -107.339, "theta_base": -153.492, "v0": 0.050, "v1": -21.606, "v2": 33.669, "v3": -34.627, "v4": 21.805, "amplitude": 35.515, "phase_angle": 18.552, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.003, "origin": [ 152.473, 274.109, 165.799 ], "x_axis": [ 0.543, 0.830, -0.127 ], "y_axis": [ -0.732, 0.394, -0.556 ], "z_axis": [ -0.412, 0.395, 0.821 ], "quaternion": [ 0.830, -0.286, -0.086, 0.470 ] } }, { "index": 310, "index_chain": 310, "chain_name": "A", "nt_resnum": 312, "nt_name": "G", "nt_code": "G", "nt_id": "///A/312", "linked_nts": [ "///A/311", "///A/313" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -121.443, "beta": -111.466, "gamma": 64.463, "delta": 85.292, "epsilon": 165.834, "zeta": -83.737, "epsilon_zeta": -110.429, "bb_type": "BI", "chi": -130.583, "glyco_bond": "anti", "C5prime_xyz": [ -1.073, 8.471, -1.145 ], "P_xyz": [ 1.384, 8.223, -0.254 ], "form": ".", "ssZp": 3.405, "Dp": 4.189, "splay_angle": 15.898, "splay_distance": 2.592, "splay_ratio": 0.138, "d22": null, "d64": null, "eta": 170.719, "theta": -141.278, "eta_prime": 163.973, "theta_prime": -145.069, "eta_base": 162.388, "theta_base": -147.710, "v0": 7.393, "v1": -26.860, "v2": 35.113, "v3": -31.722, "v4": 15.452, "amplitude": 35.363, "phase_angle": 6.818, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 151.219, 273.135, 169.210 ], "x_axis": [ 0.299, 0.644, -0.704 ], "y_axis": [ -0.954, 0.174, -0.245 ], "z_axis": [ -0.035, 0.745, 0.666 ], "quaternion": [ 0.731, -0.338, 0.229, 0.546 ] } }, { "index": 311, "index_chain": 311, "chain_name": "A", "nt_resnum": 313, "nt_name": "U", "nt_code": "U", "nt_id": "///A/313", "linked_nts": [ "///A/312", "///A/314" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop", "alpha": 155.090, "beta": -140.736, "gamma": -178.552, "delta": 146.656, "epsilon": -108.772, "zeta": 91.065, "epsilon_zeta": 160.163, "bb_type": "--", "chi": -137.617, "glyco_bond": "anti", "C5prime_xyz": [ -1.643, 8.654, -0.246 ], "P_xyz": [ 0.519, 9.150, -1.655 ], "form": ".", "ssZp": 1.117, "Dp": 1.159, "splay_angle": 57.363, "splay_distance": 8.709, "splay_ratio": 0.501, "d22": null, "d64": null, "eta": -134.467, "theta": 50.002, "eta_prime": -132.659, "theta_prime": 64.938, "eta_base": -132.728, "theta_base": 104.116, "v0": -18.430, "v1": 33.293, "v2": -34.671, "v3": 24.922, "v4": -4.289, "amplitude": 35.435, "phase_angle": 168.087, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.192, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 151.571, 274.359, 171.468 ], "x_axis": [ 0.036, 0.638, -0.769 ], "y_axis": [ -0.967, 0.217, 0.134 ], "z_axis": [ 0.252, 0.739, 0.625 ], "quaternion": [ 0.685, -0.220, 0.373, 0.586 ] } }, { "index": 312, "index_chain": 312, "chain_name": "A", "nt_resnum": 314, "nt_name": "A", "nt_code": "A", "nt_id": "///A/314", "linked_nts": [ "///A/313", "///A/315" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-pair-contact,internal-loop", "alpha": -77.845, "beta": 137.756, "gamma": 89.547, "delta": 156.488, "epsilon": -80.033, "zeta": -115.420, "epsilon_zeta": 35.387, "bb_type": "--", "chi": -80.091, "glyco_bond": "--", "C5prime_xyz": [ -2.415, 7.221, -2.725 ], "P_xyz": [ -0.280, 6.157, -3.859 ], "form": ".", "ssZp": -0.170, "Dp": 0.386, "splay_angle": 70.020, "splay_distance": 10.194, "splay_ratio": 0.587, "d22": null, "d64": null, "eta": -116.733, "theta": -107.423, "eta_prime": -98.658, "theta_prime": -108.314, "eta_base": -111.868, "theta_base": -42.189, "v0": -15.209, "v1": 33.686, "v2": -38.293, "v3": 30.460, "v4": -9.772, "amplitude": 38.396, "phase_angle": 175.796, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "0b", "suiteness": 0.010, "filter_rmsd": 0.037, "frame": { "rmsd": 0.008, "origin": [ 147.149, 267.537, 174.590 ], "x_axis": [ 0.489, -0.246, 0.837 ], "y_axis": [ -0.772, 0.323, 0.547 ], "z_axis": [ -0.405, -0.914, -0.032 ], "quaternion": [ 0.667, 0.547, -0.465, 0.197 ] } }, { "index": 313, "index_chain": 313, "chain_name": "A", "nt_resnum": 315, "nt_name": "C", "nt_code": "C", "nt_id": "///A/315", "linked_nts": [ "///A/314", "///A/316" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop", "alpha": -60.382, "beta": 110.417, "gamma": 83.929, "delta": 152.429, "epsilon": -83.596, "zeta": 78.967, "epsilon_zeta": 197.437, "bb_type": "--", "chi": -97.232, "glyco_bond": "anti", "C5prime_xyz": [ -2.050, 7.938, -2.216 ], "P_xyz": [ 0.016, 6.622, -3.166 ], "form": ".", "ssZp": 0.141, "Dp": 0.467, "splay_angle": 48.478, "splay_distance": 8.042, "splay_ratio": 0.412, "d22": null, "d64": null, "eta": -165.493, "theta": 82.607, "eta_prime": -108.509, "theta_prime": 56.337, "eta_base": -95.447, "theta_base": 88.416, "v0": -17.972, "v1": 34.613, "v2": -37.122, "v3": 27.711, "v4": -6.284, "amplitude": 37.610, "phase_angle": 170.758, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.004, "origin": [ 140.163, 271.257, 181.014 ], "x_axis": [ -0.018, 0.997, 0.075 ], "y_axis": [ -0.668, 0.043, -0.743 ], "z_axis": [ -0.744, -0.064, 0.666 ], "quaternion": [ 0.650, -0.261, -0.315, 0.640 ] } }, { "index": 314, "index_chain": 314, "chain_name": "A", "nt_resnum": 316, "nt_name": "G", "nt_code": "G", "nt_id": "///A/316", "linked_nts": [ "///A/315", "///A/317" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop", "alpha": -121.413, "beta": -172.686, "gamma": 39.623, "delta": 81.306, "epsilon": -153.178, "zeta": -76.268, "epsilon_zeta": -76.910, "bb_type": "BI", "chi": -163.839, "glyco_bond": "anti", "C5prime_xyz": [ -1.231, 8.668, 0.759 ], "P_xyz": [ 1.190, 9.098, 1.670 ], "form": "A", "ssZp": 4.509, "Dp": 4.629, "splay_angle": 22.933, "splay_distance": 3.567, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 145.908, "theta": -153.052, "eta_prime": 145.401, "theta_prime": -147.790, "eta_base": 164.285, "theta_base": -119.924, "v0": 3.881, "v1": -25.772, "v2": 36.707, "v3": -35.412, "v4": 19.888, "amplitude": 37.641, "phase_angle": 12.790, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6g", "suiteness": 0.097, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 143.698, 265.724, 176.372 ], "x_axis": [ -0.309, 0.368, 0.877 ], "y_axis": [ -0.916, 0.135, -0.379 ], "z_axis": [ -0.258, -0.920, 0.295 ], "quaternion": [ 0.529, 0.256, -0.536, 0.606 ] } }, { "index": 315, "index_chain": 315, "chain_name": "A", "nt_resnum": 317, "nt_name": "G", "nt_code": "G", "nt_id": "///A/317", "linked_nts": [ "///A/316", "///A/318" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -54.604, "beta": 161.886, "gamma": 56.376, "delta": 82.570, "epsilon": -143.978, "zeta": -83.658, "epsilon_zeta": -60.320, "bb_type": "BI", "chi": -170.364, "glyco_bond": "anti", "C5prime_xyz": [ -1.598, 8.628, 1.147 ], "P_xyz": [ 0.990, 8.957, 1.414 ], "form": "A", "ssZp": 4.540, "Dp": 4.599, "splay_angle": 21.928, "splay_distance": 3.434, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 173.865, "theta": -145.303, "eta_prime": -171.174, "theta_prime": -145.058, "eta_base": -131.862, "theta_base": -117.810, "v0": 1.438, "v1": -22.871, "v2": 34.460, "v3": -34.601, "v4": 20.936, "amplitude": 35.922, "phase_angle": 16.407, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.849, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 143.997, 262.823, 178.426 ], "x_axis": [ -0.705, 0.427, 0.567 ], "y_axis": [ -0.646, -0.056, -0.761 ], "z_axis": [ -0.293, -0.903, 0.316 ], "quaternion": [ 0.372, 0.095, -0.577, 0.720 ] } }, { "index": 316, "index_chain": 316, "chain_name": "A", "nt_resnum": 318, "nt_name": "A", "nt_code": "A", "nt_id": "///A/318", "linked_nts": [ "///A/317", "///A/319" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -47.260, "beta": 163.966, "gamma": 44.109, "delta": 83.331, "epsilon": -143.274, "zeta": -84.204, "epsilon_zeta": -59.070, "bb_type": "BI", "chi": -163.469, "glyco_bond": "anti", "C5prime_xyz": [ -1.459, 8.673, 0.761 ], "P_xyz": [ 1.075, 8.995, 1.316 ], "form": "A", "ssZp": 4.380, "Dp": 4.559, "splay_angle": 20.030, "splay_distance": 3.229, "splay_ratio": 0.175, "d22": null, "d64": null, "eta": 172.188, "theta": -146.491, "eta_prime": -175.480, "theta_prime": -145.486, "eta_base": -134.327, "theta_base": -123.261, "v0": 0.254, "v1": -21.269, "v2": 33.017, "v3": -33.848, "v4": 21.204, "amplitude": 34.768, "phase_angle": 18.261, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.608, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 143.449, 260.397, 180.795 ], "x_axis": [ -0.918, 0.397, -0.001 ], "y_axis": [ -0.135, -0.313, -0.940 ], "z_axis": [ -0.373, -0.863, 0.341 ], "quaternion": [ 0.166, -0.117, -0.562, 0.802 ] } }, { "index": 317, "index_chain": 317, "chain_name": "A", "nt_resnum": 319, "nt_name": "G", "nt_code": "G", "nt_id": "///A/319", "linked_nts": [ "///A/318", "///A/320" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor", "alpha": -49.488, "beta": 159.948, "gamma": 46.523, "delta": 81.366, "epsilon": -156.472, "zeta": -130.016, "epsilon_zeta": -26.456, "bb_type": "--", "chi": -157.271, "glyco_bond": "anti", "C5prime_xyz": [ -1.523, 8.843, 0.346 ], "P_xyz": [ 1.029, 9.335, 0.495 ], "form": ".", "ssZp": 4.264, "Dp": 4.484, "splay_angle": 49.887, "splay_distance": 7.685, "splay_ratio": 0.422, "d22": null, "d64": null, "eta": 167.186, "theta": 158.500, "eta_prime": -178.655, "theta_prime": 160.373, "eta_base": -142.497, "theta_base": 160.350, "v0": -1.790, "v1": -20.525, "v2": 33.706, "v3": -35.722, "v4": 23.689, "amplitude": 36.205, "phase_angle": 21.410, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.666, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 142.230, 258.423, 183.041 ], "x_axis": [ -0.840, 0.239, -0.487 ], "y_axis": [ 0.290, -0.560, -0.776 ], "z_axis": [ -0.458, -0.793, 0.401 ], "quaternion": [ -0.015, -0.282, -0.469, 0.837 ] } }, { "index": 318, "index_chain": 318, "chain_name": "A", "nt_resnum": 320, "nt_name": "U", "nt_code": "U", "nt_id": "///A/320", "linked_nts": [ "///A/319", "///A/321" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,bulge,splayed-apart", "alpha": -48.635, "beta": 148.715, "gamma": 51.767, "delta": 81.909, "epsilon": -95.429, "zeta": 114.980, "epsilon_zeta": 149.591, "bb_type": "--", "chi": -160.447, "glyco_bond": "anti", "C5prime_xyz": [ -1.525, 8.734, 0.519 ], "P_xyz": [ 1.063, 9.007, 0.262 ], "form": ".", "ssZp": 3.958, "Dp": 4.643, "splay_angle": 148.123, "splay_distance": 18.755, "splay_ratio": 0.962, "d22": 9.672, "d64": 12.676, "eta": -168.022, "theta": 109.831, "eta_prime": -178.732, "theta_prime": 68.744, "eta_base": 167.079, "theta_base": 10.935, "v0": 0.418, "v1": -22.682, "v2": 34.999, "v3": -35.731, "v4": 22.267, "amplitude": 36.790, "phase_angle": 17.952, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.798, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 146.284, 254.570, 188.312 ], "x_axis": [ -0.904, 0.371, -0.210 ], "y_axis": [ -0.013, -0.516, -0.856 ], "z_axis": [ -0.426, -0.772, 0.472 ], "quaternion": [ 0.113, -0.187, -0.479, 0.850 ] } }, { "index": 319, "index_chain": 319, "chain_name": "A", "nt_resnum": 321, "nt_name": "U", "nt_code": "U", "nt_id": "///A/321", "linked_nts": [ "///A/320", "///A/322" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,bulge,splayed-apart", "alpha": 60.883, "beta": -142.130, "gamma": 45.062, "delta": 143.049, "epsilon": -161.466, "zeta": -137.006, "epsilon_zeta": -24.460, "bb_type": "--", "chi": -92.158, "glyco_bond": "anti", "C5prime_xyz": [ -2.635, 7.753, -2.459 ], "P_xyz": [ -0.760, 9.576, -2.432 ], "form": ".", "ssZp": 1.952, "Dp": 2.102, "splay_angle": 58.273, "splay_distance": 9.375, "splay_ratio": 0.487, "d22": null, "d64": null, "eta": 3.886, "theta": -167.408, "eta_prime": 21.934, "theta_prime": -173.082, "eta_base": 65.276, "theta_base": -136.554, "v0": -23.205, "v1": 35.686, "v2": -33.799, "v3": 21.304, "v4": 0.985, "amplitude": 36.048, "phase_angle": 159.656, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.004, "origin": [ 146.568, 241.430, 174.933 ], "x_axis": [ -0.990, 0.092, -0.105 ], "y_axis": [ -0.012, 0.691, 0.723 ], "z_axis": [ 0.138, 0.717, -0.683 ], "quaternion": [ 0.066, 0.022, 0.917, 0.392 ] } }, { "index": 320, "index_chain": 320, "chain_name": "A", "nt_resnum": 322, "nt_name": "A", "nt_code": "A", "nt_id": "///A/322", "linked_nts": [ "///A/321", "///A/323" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,bulge,cap-acceptor,phosphate", "alpha": -50.715, "beta": 175.583, "gamma": 34.234, "delta": 77.129, "epsilon": -122.879, "zeta": -57.684, "epsilon_zeta": -65.196, "bb_type": "--", "chi": -175.590, "glyco_bond": "anti", "C5prime_xyz": [ -1.666, 8.494, 1.392 ], "P_xyz": [ 0.640, 9.095, 2.444 ], "form": ".", "ssZp": 4.708, "Dp": 4.776, "splay_angle": 38.612, "splay_distance": 5.932, "splay_ratio": 0.333, "d22": null, "d64": null, "eta": -175.574, "theta": -115.795, "eta_prime": 175.489, "theta_prime": -106.225, "eta_base": -146.890, "theta_base": -43.504, "v0": 2.002, "v1": -25.963, "v2": 38.836, "v3": -38.728, "v4": 23.081, "amplitude": 40.363, "phase_angle": 15.810, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.011, "origin": [ 149.748, 249.270, 170.895 ], "x_axis": [ -0.936, 0.195, 0.293 ], "y_axis": [ 0.200, -0.390, 0.899 ], "z_axis": [ 0.289, 0.900, 0.326 ], "quaternion": [ -0.002, 0.179, 0.552, 0.814 ] } }, { "index": 321, "index_chain": 321, "chain_name": "A", "nt_resnum": 323, "nt_name": "C", "nt_code": "C", "nt_id": "///A/323", "linked_nts": [ "///A/322", "///A/324" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,bulge,cap-donor,splayed-apart", "alpha": -58.549, "beta": 171.088, "gamma": 47.462, "delta": 80.111, "epsilon": -138.439, "zeta": 100.920, "epsilon_zeta": 120.641, "bb_type": "--", "chi": -155.244, "glyco_bond": "anti", "C5prime_xyz": [ -1.318, 8.781, 0.230 ], "P_xyz": [ 1.273, 9.180, 0.317 ], "form": ".", "ssZp": 4.250, "Dp": 4.705, "splay_angle": 96.419, "splay_distance": 13.225, "splay_ratio": 0.746, "d22": null, "d64": null, "eta": 157.966, "theta": 15.387, "eta_prime": -172.555, "theta_prime": -30.584, "eta_base": -89.640, "theta_base": -103.683, "v0": 2.032, "v1": -24.671, "v2": 36.710, "v3": -36.541, "v4": 21.757, "amplitude": 38.119, "phase_angle": 15.623, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.563, "filter_rmsd": 0.063, "frame": { "rmsd": 0.004, "origin": [ 146.079, 250.915, 175.256 ], "x_axis": [ -0.108, -0.395, 0.912 ], "y_axis": [ 0.994, -0.033, 0.104 ], "z_axis": [ -0.011, 0.918, 0.397 ], "quaternion": [ 0.560, -0.363, -0.412, -0.620 ] } }, { "index": 322, "index_chain": 322, "chain_name": "A", "nt_resnum": 324, "nt_name": "A", "nt_code": "A", "nt_id": "///A/324", "linked_nts": [ "///A/323", "///A/325" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,bulge,splayed-apart", "alpha": -68.159, "beta": -130.439, "gamma": 126.944, "delta": 82.765, "epsilon": 169.654, "zeta": -81.800, "epsilon_zeta": -108.546, "bb_type": "BI", "chi": -144.930, "glyco_bond": "anti", "C5prime_xyz": [ -1.392, 8.715, -0.398 ], "P_xyz": [ 0.866, 8.396, -1.685 ], "form": "A", "ssZp": 3.931, "Dp": 4.222, "splay_angle": 19.208, "splay_distance": 3.087, "splay_ratio": 0.168, "d22": null, "d64": null, "eta": -61.644, "theta": -132.167, "eta_prime": 11.109, "theta_prime": -151.456, "eta_base": 79.040, "theta_base": -127.617, "v0": 0.759, "v1": -22.237, "v2": 33.950, "v3": -34.374, "v4": 21.245, "amplitude": 35.566, "phase_angle": 17.340, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.006, "origin": [ 152.109, 259.975, 182.769 ], "x_axis": [ -0.874, 0.163, -0.458 ], "y_axis": [ 0.227, -0.696, -0.681 ], "z_axis": [ -0.429, -0.700, 0.571 ], "quaternion": [ -0.018, -0.250, -0.390, 0.886 ] } }, { "index": 323, "index_chain": 323, "chain_name": "A", "nt_resnum": 325, "nt_name": "A", "nt_code": "A", "nt_id": "///A/325", "linked_nts": [ "///A/324", "///A/326" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,bulge,A-minor", "alpha": 161.968, "beta": -129.505, "gamma": 160.378, "delta": 85.440, "epsilon": 171.474, "zeta": 39.082, "epsilon_zeta": 132.392, "bb_type": "--", "chi": -171.961, "glyco_bond": "anti", "C5prime_xyz": [ -1.689, 8.688, 1.181 ], "P_xyz": [ 0.608, 9.333, 0.110 ], "form": ".", "ssZp": 3.646, "Dp": 3.859, "splay_angle": 22.947, "splay_distance": 3.945, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 168.273, "theta": -90.647, "eta_prime": -162.739, "theta_prime": -125.718, "eta_base": -113.070, "theta_base": -80.362, "v0": -5.334, "v1": -14.332, "v2": 27.238, "v3": -31.126, "v4": 23.086, "amplitude": 30.947, "phase_angle": 28.341, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.161, "filter_rmsd": 0.041, "frame": { "rmsd": 0.012, "origin": [ 149.836, 258.699, 184.423 ], "x_axis": [ -0.637, -0.201, -0.744 ], "y_axis": [ 0.584, -0.756, -0.296 ], "z_axis": [ -0.503, -0.623, 0.598 ], "quaternion": [ -0.227, -0.361, -0.266, 0.865 ] } }, { "index": 324, "index_chain": 324, "chain_name": "A", "nt_resnum": 326, "nt_name": "A", "nt_code": "A", "nt_id": "///A/326", "linked_nts": [ "///A/325", "///A/327" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,bulge,A-minor,phosphate", "alpha": -168.591, "beta": 92.321, "gamma": 140.358, "delta": 84.769, "epsilon": -88.935, "zeta": -116.060, "epsilon_zeta": 27.125, "bb_type": "--", "chi": 175.923, "glyco_bond": "anti", "C5prime_xyz": [ -1.788, 8.343, 1.855 ], "P_xyz": [ -0.990, 10.031, 0.048 ], "form": ".", "ssZp": 4.342, "Dp": 4.417, "splay_angle": 44.673, "splay_distance": 8.016, "splay_ratio": 0.389, "d22": null, "d64": null, "eta": 153.518, "theta": -170.194, "eta_prime": 175.915, "theta_prime": -173.050, "eta_base": -112.600, "theta_base": -174.340, "v0": -1.626, "v1": -18.864, "v2": 30.964, "v3": -32.848, "v4": 21.796, "amplitude": 33.264, "phase_angle": 21.431, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.006, "origin": [ 146.684, 256.349, 184.097 ], "x_axis": [ -0.027, -0.665, -0.746 ], "y_axis": [ 0.825, -0.437, 0.359 ], "z_axis": [ -0.565, -0.606, 0.560 ], "quaternion": [ 0.524, 0.461, 0.087, -0.711 ] } }, { "index": 325, "index_chain": 325, "chain_name": "A", "nt_resnum": 327, "nt_name": "G", "nt_code": "G", "nt_id": "///A/327", "linked_nts": [ "///A/326", "///A/328" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge", "alpha": 41.688, "beta": -154.873, "gamma": -90.816, "delta": 86.418, "epsilon": -179.538, "zeta": -79.363, "epsilon_zeta": -100.175, "bb_type": "BI", "chi": -152.774, "glyco_bond": "anti", "C5prime_xyz": [ -1.167, 8.648, 0.154 ], "P_xyz": [ -0.756, 11.197, -0.119 ], "form": "A", "ssZp": 4.133, "Dp": 4.322, "splay_angle": 19.994, "splay_distance": 3.326, "splay_ratio": 0.178, "d22": null, "d64": null, "eta": 158.312, "theta": 174.244, "eta_prime": 162.476, "theta_prime": -176.885, "eta_base": 165.723, "theta_base": -147.762, "v0": 5.091, "v1": -24.591, "v2": 33.590, "v3": -31.647, "v4": 16.799, "amplitude": 34.139, "phase_angle": 10.288, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 140.172, 256.576, 188.767 ], "x_axis": [ 0.062, -0.483, -0.874 ], "y_axis": [ 0.907, -0.337, 0.251 ], "z_axis": [ -0.416, -0.808, 0.417 ], "quaternion": [ 0.534, 0.495, 0.214, -0.651 ] } }, { "index": 326, "index_chain": 326, "chain_name": "A", "nt_resnum": 328, "nt_name": "G", "nt_code": "G", "nt_id": "///A/328", "linked_nts": [ "///A/327", "///A/329" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 161.059, "beta": -145.357, "gamma": 162.893, "delta": 82.993, "epsilon": -159.461, "zeta": -84.414, "epsilon_zeta": -75.047, "bb_type": "BI", "chi": -176.665, "glyco_bond": "anti", "C5prime_xyz": [ -1.467, 8.556, 1.499 ], "P_xyz": [ 0.648, 9.684, 0.452 ], "form": "A", "ssZp": 4.394, "Dp": 4.450, "splay_angle": 22.621, "splay_distance": 3.655, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 162.860, "theta": -141.937, "eta_prime": -177.119, "theta_prime": -153.625, "eta_base": -138.135, "theta_base": -129.505, "v0": 0.352, "v1": -21.231, "v2": 32.857, "v3": -33.585, "v4": 20.973, "amplitude": 34.560, "phase_angle": 18.060, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.425, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 137.496, 254.658, 189.238 ], "x_axis": [ 0.451, -0.589, -0.671 ], "y_axis": [ 0.750, -0.158, 0.643 ], "z_axis": [ -0.485, -0.793, 0.370 ], "quaternion": [ 0.645, 0.557, 0.072, -0.519 ] } }, { "index": 327, "index_chain": 327, "chain_name": "A", "nt_resnum": 329, "nt_name": "A", "nt_code": "A", "nt_id": "///A/329", "linked_nts": [ "///A/328", "///A/330" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 168.547, "beta": -151.187, "gamma": 155.180, "delta": 83.275, "epsilon": -123.291, "zeta": -142.090, "epsilon_zeta": 18.799, "bb_type": "--", "chi": 174.046, "glyco_bond": "anti", "C5prime_xyz": [ -1.579, 8.193, 1.975 ], "P_xyz": [ 0.636, 9.389, 1.292 ], "form": "A", "ssZp": 4.668, "Dp": 4.697, "splay_angle": 26.586, "splay_distance": 4.041, "splay_ratio": 0.231, "d22": null, "d64": null, "eta": 159.812, "theta": -154.163, "eta_prime": 176.801, "theta_prime": -153.921, "eta_base": -138.607, "theta_base": -130.977, "v0": 2.450, "v1": -23.628, "v2": 34.574, "v3": -34.185, "v4": 20.041, "amplitude": 35.763, "phase_angle": 14.817, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.176, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 134.868, 252.166, 188.747 ], "x_axis": [ 0.784, -0.588, -0.198 ], "y_axis": [ 0.373, 0.192, 0.908 ], "z_axis": [ -0.496, -0.786, 0.370 ], "quaternion": [ 0.766, 0.553, -0.097, -0.314 ] } }, { "index": 328, "index_chain": 328, "chain_name": "A", "nt_resnum": 330, "nt_name": "A", "nt_code": "A", "nt_id": "///A/330", "linked_nts": [ "///A/329", "///A/331" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 131.757, "beta": -99.562, "gamma": 170.594, "delta": 84.038, "epsilon": -176.687, "zeta": 41.267, "epsilon_zeta": 142.047, "bb_type": "--", "chi": 170.902, "glyco_bond": "anti", "C5prime_xyz": [ -1.642, 8.250, 2.124 ], "P_xyz": [ 0.546, 8.867, 0.834 ], "form": "A", "ssZp": 3.759, "Dp": 4.183, "splay_angle": 22.486, "splay_distance": 3.814, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 158.540, "theta": -73.640, "eta_prime": -170.725, "theta_prime": -130.897, "eta_base": -130.993, "theta_base": -111.618, "v0": -1.572, "v1": -18.765, "v2": 30.754, "v3": -32.557, "v4": 21.566, "amplitude": 33.012, "phase_angle": 21.314, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.045, "frame": { "rmsd": 0.018, "origin": [ 132.522, 248.890, 188.434 ], "x_axis": [ 0.869, -0.407, 0.281 ], "y_axis": [ -0.082, 0.441, 0.894 ], "z_axis": [ -0.488, -0.800, 0.350 ], "quaternion": [ 0.816, 0.519, -0.236, -0.100 ] } }, { "index": 329, "index_chain": 329, "chain_name": "A", "nt_resnum": 331, "nt_name": "C", "nt_code": "C", "nt_id": "///A/331", "linked_nts": [ "///A/330", "///A/332" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 175.709, "beta": 75.577, "gamma": 146.715, "delta": 85.306, "epsilon": -106.156, "zeta": -94.684, "epsilon_zeta": -11.472, "bb_type": "--", "chi": 175.085, "glyco_bond": "anti", "C5prime_xyz": [ -1.003, 8.059, 2.003 ], "P_xyz": [ -0.529, 9.841, 0.165 ], "form": "A", "ssZp": 4.765, "Dp": 4.792, "splay_angle": 19.894, "splay_distance": 3.166, "splay_ratio": 0.175, "d22": null, "d64": null, "eta": 128.410, "theta": 179.320, "eta_prime": 156.251, "theta_prime": -169.652, "eta_base": -153.579, "theta_base": -144.672, "v0": 9.311, "v1": -28.695, "v2": 36.201, "v3": -31.858, "v4": 14.279, "amplitude": 36.297, "phase_angle": 4.174, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.007, "origin": [ 132.239, 245.090, 188.267 ], "x_axis": [ 0.647, -0.038, 0.762 ], "y_axis": [ -0.618, 0.559, 0.553 ], "z_axis": [ -0.447, -0.828, 0.338 ], "quaternion": [ 0.797, 0.433, -0.379, 0.182 ] } }, { "index": 330, "index_chain": 330, "chain_name": "A", "nt_resnum": 332, "nt_name": "G", "nt_code": "G", "nt_id": "///A/332", "linked_nts": [ "///A/331", "///A/333" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -54.257, "beta": 153.104, "gamma": 45.873, "delta": 79.652, "epsilon": -152.137, "zeta": -77.397, "epsilon_zeta": -74.740, "bb_type": "BI", "chi": -169.382, "glyco_bond": "anti", "C5prime_xyz": [ -1.692, 8.727, 1.048 ], "P_xyz": [ 0.858, 9.157, 1.402 ], "form": "A", "ssZp": 4.520, "Dp": 4.564, "splay_angle": 23.590, "splay_distance": 3.743, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 151.999, "theta": -149.328, "eta_prime": 170.251, "theta_prime": -149.943, "eta_base": -151.937, "theta_base": -128.234, "v0": -1.053, "v1": -21.938, "v2": 35.289, "v3": -36.880, "v4": 23.929, "amplitude": 37.598, "phase_angle": 20.183, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.122, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 132.432, 241.965, 188.731 ], "x_axis": [ 0.308, 0.523, 0.795 ], "y_axis": [ -0.914, 0.395, 0.094 ], "z_axis": [ -0.265, -0.755, 0.600 ], "quaternion": [ 0.759, 0.280, -0.349, 0.473 ] } }, { "index": 331, "index_chain": 331, "chain_name": "A", "nt_resnum": 333, "nt_name": "A", "nt_code": "A", "nt_id": "///A/333", "linked_nts": [ "///A/332", "///A/334" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -58.497, "beta": 162.790, "gamma": 60.257, "delta": 81.453, "epsilon": -115.140, "zeta": -110.559, "epsilon_zeta": -4.581, "bb_type": "--", "chi": -172.426, "glyco_bond": "anti", "C5prime_xyz": [ -1.768, 8.620, 1.214 ], "P_xyz": [ 0.764, 9.178, 1.556 ], "form": ".", "ssZp": 4.448, "Dp": 4.609, "splay_angle": 25.108, "splay_distance": 4.516, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": -178.373, "theta": -126.264, "eta_prime": -168.540, "theta_prime": -137.955, "eta_base": -135.745, "theta_base": -131.147, "v0": -1.673, "v1": -20.562, "v2": 33.647, "v3": -35.590, "v4": 23.503, "amplitude": 36.094, "phase_angle": 21.219, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.854, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 133.317, 238.933, 190.739 ], "x_axis": [ -0.169, 0.644, 0.746 ], "y_axis": [ -0.941, 0.121, -0.317 ], "z_axis": [ -0.295, -0.755, 0.586 ], "quaternion": [ 0.620, 0.177, -0.420, 0.639 ] } }, { "index": 332, "index_chain": 332, "chain_name": "A", "nt_resnum": 334, "nt_name": "G", "nt_code": "G", "nt_id": "///A/334", "linked_nts": [ "///A/333", "///A/335" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 90.253, "beta": -123.537, "gamma": -141.287, "delta": 83.284, "epsilon": -129.218, "zeta": -67.891, "epsilon_zeta": -61.327, "bb_type": "BI", "chi": 169.488, "glyco_bond": "anti", "C5prime_xyz": [ -1.691, 8.137, 2.212 ], "P_xyz": [ -0.801, 10.471, 1.437 ], "form": "A", "ssZp": 4.596, "Dp": 4.670, "splay_angle": 24.694, "splay_distance": 4.036, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 170.700, "theta": -167.187, "eta_prime": 177.334, "theta_prime": -156.304, "eta_base": -157.712, "theta_base": -113.828, "v0": 2.243, "v1": -23.359, "v2": 34.427, "v3": -34.100, "v4": 20.102, "amplitude": 35.659, "phase_angle": 15.105, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 134.743, 235.964, 193.830 ], "x_axis": [ -0.370, 0.779, 0.507 ], "y_axis": [ -0.824, -0.023, -0.565 ], "z_axis": [ -0.429, -0.627, 0.651 ], "quaternion": [ 0.561, 0.027, -0.417, 0.715 ] } }, { "index": 333, "index_chain": 333, "chain_name": "A", "nt_resnum": 335, "nt_name": "G", "nt_code": "G", "nt_id": "///A/335", "linked_nts": [ "///A/334", "///A/336" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -60.843, "beta": -178.444, "gamma": 40.343, "delta": 80.910, "epsilon": -151.303, "zeta": -74.845, "epsilon_zeta": -76.457, "bb_type": "BI", "chi": -160.447, "glyco_bond": "anti", "C5prime_xyz": [ -1.642, 8.775, 0.537 ], "P_xyz": [ 0.734, 9.520, 1.324 ], "form": "A", "ssZp": 4.388, "Dp": 4.566, "splay_angle": 24.574, "splay_distance": 3.949, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 159.802, "theta": -151.025, "eta_prime": 178.838, "theta_prime": -147.029, "eta_base": -126.959, "theta_base": -118.828, "v0": -0.739, "v1": -21.673, "v2": 34.576, "v3": -35.995, "v4": 23.182, "amplitude": 36.741, "phase_angle": 19.768, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.593, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 133.907, 235.526, 197.754 ], "x_axis": [ -0.822, 0.566, -0.065 ], "y_axis": [ -0.334, -0.570, -0.750 ], "z_axis": [ -0.462, -0.595, 0.658 ], "quaternion": [ 0.258, -0.151, -0.385, 0.873 ] } }, { "index": 334, "index_chain": 334, "chain_name": "A", "nt_resnum": 336, "nt_name": "U", "nt_code": "U", "nt_id": "///A/336", "linked_nts": [ "///A/335", "///A/337" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -57.202, "beta": 169.263, "gamma": 51.739, "delta": 78.277, "epsilon": -93.626, "zeta": -112.371, "epsilon_zeta": 18.745, "bb_type": "--", "chi": -158.451, "glyco_bond": "anti", "C5prime_xyz": [ -1.588, 8.767, 0.406 ], "P_xyz": [ 0.945, 9.393, 0.377 ], "form": ".", "ssZp": 3.898, "Dp": 4.719, "splay_angle": 40.293, "splay_distance": 6.786, "splay_ratio": 0.345, "d22": null, "d64": null, "eta": -175.293, "theta": -104.208, "eta_prime": -167.375, "theta_prime": -111.325, "eta_base": -135.151, "theta_base": -97.303, "v0": 0.538, "v1": -24.201, "v2": 37.329, "v3": -38.075, "v4": 23.642, "amplitude": 39.215, "phase_angle": 17.842, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.923, "filter_rmsd": 0.100, "frame": { "rmsd": 0.008, "origin": [ 131.910, 234.652, 201.046 ], "x_axis": [ -0.872, 0.194, -0.449 ], "y_axis": [ 0.119, -0.806, -0.579 ], "z_axis": [ -0.474, -0.559, 0.680 ], "quaternion": [ 0.020, -0.252, -0.311, 0.916 ] } }, { "index": 335, "index_chain": 335, "chain_name": "A", "nt_resnum": 337, "nt_name": "A", "nt_code": "A", "nt_id": "///A/337", "linked_nts": [ "///A/336", "///A/338" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": 69.469, "beta": 166.411, "gamma": -88.512, "delta": 144.736, "epsilon": -165.442, "zeta": -99.349, "epsilon_zeta": -66.093, "bb_type": "BI", "chi": 110.759, "glyco_bond": "--", "C5prime_xyz": [ -4.219, 6.126, 2.863 ], "P_xyz": [ -6.040, 6.580, 4.699 ], "form": ".", "ssZp": -1.838, "Dp": 2.144, "splay_angle": 50.415, "splay_distance": 8.253, "splay_ratio": 0.427, "d22": null, "d64": null, "eta": 152.157, "theta": -134.627, "eta_prime": 169.011, "theta_prime": -127.382, "eta_base": -163.490, "theta_base": -103.626, "v0": -26.624, "v1": 39.732, "v2": -36.850, "v3": 22.410, "v4": 2.382, "amplitude": 39.806, "phase_angle": 157.781, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "7r", "suiteness": 0.084, "filter_rmsd": 0.048, "frame": { "rmsd": 0.019, "origin": [ 125.976, 231.825, 202.735 ], "x_axis": [ 0.078, 0.682, 0.727 ], "y_axis": [ 0.558, -0.634, 0.536 ], "z_axis": [ 0.826, 0.364, -0.430 ], "quaternion": [ 0.059, 0.732, 0.424, 0.531 ] } }, { "index": 336, "index_chain": 336, "chain_name": "A", "nt_resnum": 338, "nt_name": "G", "nt_code": "G", "nt_id": "///A/338", "linked_nts": [ "///A/337", "///A/339" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": 151.977, "beta": -141.948, "gamma": -177.364, "delta": 83.831, "epsilon": -168.889, "zeta": -78.443, "epsilon_zeta": -90.446, "bb_type": "BI", "chi": -174.314, "glyco_bond": "anti", "C5prime_xyz": [ -1.274, 8.580, 1.384 ], "P_xyz": [ 0.446, 10.012, 0.024 ], "form": "A", "ssZp": 4.309, "Dp": 4.367, "splay_angle": 26.867, "splay_distance": 4.333, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 179.896, "theta": -158.030, "eta_prime": -143.411, "theta_prime": -163.084, "eta_base": -104.785, "theta_base": -143.045, "v0": 1.306, "v1": -22.043, "v2": 33.262, "v3": -33.432, "v4": 20.310, "amplitude": 34.697, "phase_angle": 16.536, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 121.442, 227.673, 197.229 ], "x_axis": [ 0.517, -0.341, -0.785 ], "y_axis": [ 0.626, -0.475, 0.618 ], "z_axis": [ -0.584, -0.811, -0.032 ], "quaternion": [ 0.502, 0.711, 0.100, -0.481 ] } }, { "index": 337, "index_chain": 337, "chain_name": "A", "nt_resnum": 339, "nt_name": "A", "nt_code": "A", "nt_id": "///A/339", "linked_nts": [ "///A/338", "///A/340" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 178.351, "beta": -153.073, "gamma": 151.789, "delta": 81.117, "epsilon": -104.237, "zeta": -102.343, "epsilon_zeta": -1.894, "bb_type": "--", "chi": 169.834, "glyco_bond": "anti", "C5prime_xyz": [ -1.768, 8.201, 2.168 ], "P_xyz": [ 0.556, 9.363, 1.962 ], "form": "A", "ssZp": 4.503, "Dp": 4.582, "splay_angle": 23.359, "splay_distance": 3.657, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 172.547, "theta": -147.831, "eta_prime": -175.507, "theta_prime": -143.281, "eta_base": -142.671, "theta_base": -106.865, "v0": -0.347, "v1": -21.603, "v2": 34.144, "v3": -35.335, "v4": 22.456, "amplitude": 36.149, "phase_angle": 19.171, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.053, "filter_rmsd": 0.047, "frame": { "rmsd": 0.016, "origin": [ 117.804, 225.856, 195.734 ], "x_axis": [ 0.778, -0.484, -0.401 ], "y_axis": [ 0.380, -0.145, 0.913 ], "z_axis": [ -0.500, -0.863, 0.071 ], "quaternion": [ 0.653, 0.680, -0.038, -0.331 ] } }, { "index": 338, "index_chain": 338, "chain_name": "A", "nt_resnum": 340, "nt_name": "U", "nt_code": "U", "nt_id": "///A/340", "linked_nts": [ "///A/339", "///A/341" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -44.277, "beta": 140.421, "gamma": 49.369, "delta": 80.570, "epsilon": -131.680, "zeta": -78.788, "epsilon_zeta": -52.892, "bb_type": "BI", "chi": -167.534, "glyco_bond": "anti", "C5prime_xyz": [ -1.738, 8.731, 0.919 ], "P_xyz": [ 0.848, 9.020, 0.966 ], "form": ".", "ssZp": 4.433, "Dp": 4.595, "splay_angle": 29.139, "splay_distance": 4.541, "splay_ratio": 0.252, "d22": null, "d64": null, "eta": 161.710, "theta": -130.705, "eta_prime": 179.890, "theta_prime": -129.188, "eta_base": -130.504, "theta_base": -80.593, "v0": -2.823, "v1": -20.102, "v2": 34.008, "v3": -36.618, "v4": 24.874, "amplitude": 36.918, "phase_angle": 22.900, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.616, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 116.479, 222.602, 194.718 ], "x_axis": [ 0.858, -0.437, 0.271 ], "y_axis": [ -0.211, 0.180, 0.961 ], "z_axis": [ -0.469, -0.881, 0.062 ], "quaternion": [ 0.725, 0.635, -0.255, -0.078 ] } }, { "index": 339, "index_chain": 339, "chain_name": "A", "nt_resnum": 341, "nt_name": "G", "nt_code": "G", "nt_id": "///A/341", "linked_nts": [ "///A/340", "///A/342" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -54.991, "beta": 150.430, "gamma": 58.894, "delta": 85.263, "epsilon": -92.359, "zeta": -165.704, "epsilon_zeta": 73.345, "bb_type": "BII", "chi": -164.941, "glyco_bond": "anti", "C5prime_xyz": [ -1.461, 8.654, 0.816 ], "P_xyz": [ 1.136, 8.852, 0.517 ], "form": ".", "ssZp": 4.104, "Dp": 4.615, "splay_angle": 62.165, "splay_distance": 9.276, "splay_ratio": 0.520, "d22": null, "d64": null, "eta": 179.668, "theta": 153.254, "eta_prime": -161.702, "theta_prime": -179.424, "eta_base": -97.679, "theta_base": 179.215, "v0": 2.442, "v1": -23.064, "v2": 33.669, "v3": -33.203, "v4": 19.468, "amplitude": 34.807, "phase_angle": 14.689, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.621, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 117.137, 218.483, 196.511 ], "x_axis": [ 0.374, -0.118, 0.920 ], "y_axis": [ -0.828, 0.404, 0.388 ], "z_axis": [ -0.417, -0.907, 0.053 ], "quaternion": [ 0.677, 0.479, -0.494, 0.263 ] } }, { "index": 340, "index_chain": 340, "chain_name": "A", "nt_resnum": 342, "nt_name": "A", "nt_code": "A", "nt_id": "///A/342", "linked_nts": [ "///A/341", "///A/343" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate", "alpha": -70.719, "beta": 178.505, "gamma": 37.740, "delta": 92.183, "epsilon": -157.320, "zeta": -80.051, "epsilon_zeta": -77.268, "bb_type": "BI", "chi": -101.403, "glyco_bond": "anti", "C5prime_xyz": [ -1.497, 7.522, -2.513 ], "P_xyz": [ 1.088, 7.614, -2.989 ], "form": ".", "ssZp": 1.417, "Dp": 4.463, "splay_angle": 19.644, "splay_distance": 3.532, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": -159.553, "theta": -149.235, "eta_prime": 179.006, "theta_prime": -150.249, "eta_base": 155.900, "theta_base": -130.560, "v0": 9.872, "v1": -25.379, "v2": 30.487, "v3": -25.678, "v4": 10.068, "amplitude": 30.488, "phase_angle": 0.302, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.026, "filter_rmsd": 0.039, "frame": { "rmsd": 0.015, "origin": [ 111.036, 214.080, 191.084 ], "x_axis": [ 0.709, -0.157, 0.688 ], "y_axis": [ -0.656, 0.211, 0.724 ], "z_axis": [ -0.259, -0.965, 0.046 ], "quaternion": [ 0.701, 0.603, -0.338, 0.178 ] } }, { "index": 341, "index_chain": 341, "chain_name": "A", "nt_resnum": 343, "nt_name": "A", "nt_code": "A", "nt_id": "///A/343", "linked_nts": [ "///A/342", "///A/344" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,junction-loop,A-minor,cap-acceptor,splayed-apart", "alpha": -62.951, "beta": 159.405, "gamma": 56.309, "delta": 83.031, "epsilon": -119.755, "zeta": -75.353, "epsilon_zeta": -44.402, "bb_type": "--", "chi": -108.847, "glyco_bond": "anti", "C5prime_xyz": [ -1.734, 7.978, -2.292 ], "P_xyz": [ 0.445, 7.500, -3.659 ], "form": ".", "ssZp": 1.120, "Dp": 4.725, "splay_angle": 89.534, "splay_distance": 14.455, "splay_ratio": 0.704, "d22": null, "d64": null, "eta": 172.162, "theta": -137.076, "eta_prime": -177.767, "theta_prime": -151.805, "eta_base": -153.634, "theta_base": 167.441, "v0": 4.159, "v1": -25.264, "v2": 35.669, "v3": -34.236, "v4": 19.007, "amplitude": 36.499, "phase_angle": 12.242, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.625, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 109.428, 211.544, 192.942 ], "x_axis": [ 0.496, 0.037, 0.868 ], "y_axis": [ -0.868, -0.023, 0.497 ], "z_axis": [ 0.038, -0.999, 0.021 ], "quaternion": [ 0.611, 0.612, -0.339, 0.370 ] } }, { "index": 342, "index_chain": 342, "chain_name": "A", "nt_resnum": 344, "nt_name": "G", "nt_code": "G", "nt_id": "///A/344", "linked_nts": [ "///A/343", "///A/345" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,junction-loop,splayed-apart", "alpha": -58.540, "beta": -113.994, "gamma": -65.838, "delta": 146.851, "epsilon": -148.944, "zeta": -110.382, "epsilon_zeta": -38.562, "bb_type": "BI", "chi": -70.125, "glyco_bond": "anti", "C5prime_xyz": [ -2.913, 7.036, -2.993 ], "P_xyz": [ -4.316, 8.282, -4.814 ], "form": ".", "ssZp": 1.175, "Dp": 1.902, "splay_angle": 114.127, "splay_distance": 17.264, "splay_ratio": 0.839, "d22": null, "d64": null, "eta": 135.361, "theta": -161.154, "eta_prime": 129.093, "theta_prime": 170.919, "eta_base": 103.520, "theta_base": 157.018, "v0": -21.420, "v1": 35.540, "v2": -35.300, "v3": 23.824, "v4": -1.693, "amplitude": 36.749, "phase_angle": 163.858, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "1o", "suiteness": 0.577, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 99.802, 200.777, 192.347 ], "x_axis": [ 0.810, -0.245, -0.533 ], "y_axis": [ 0.571, 0.536, 0.621 ], "z_axis": [ 0.134, -0.808, 0.574 ], "quaternion": [ 0.854, 0.418, 0.195, -0.239 ] } }, { "index": 343, "index_chain": 343, "chain_name": "A", "nt_resnum": 345, "nt_name": "A", "nt_code": "A", "nt_id": "///A/345", "linked_nts": [ "///A/344", "///A/346" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BI,non-stack,non-pair-contact,bulge,splayed-apart", "alpha": 145.389, "beta": -179.032, "gamma": 5.616, "delta": 147.730, "epsilon": -155.662, "zeta": -34.179, "epsilon_zeta": -121.483, "bb_type": "BI", "chi": -115.306, "glyco_bond": "anti", "C5prime_xyz": [ -2.171, 8.405, -1.378 ], "P_xyz": [ -0.689, 10.324, -0.381 ], "form": ".", "ssZp": 2.006, "Dp": 2.002, "splay_angle": 138.685, "splay_distance": 16.855, "splay_ratio": 0.936, "d22": null, "d64": null, "eta": -28.237, "theta": -33.018, "eta_prime": 7.605, "theta_prime": -67.692, "eta_base": 20.830, "theta_base": -130.443, "v0": -22.679, "v1": 36.949, "v2": -36.394, "v3": 24.210, "v4": -1.196, "amplitude": 38.054, "phase_angle": 163.011, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.006, "origin": [ 99.702, 200.172, 209.600 ], "x_axis": [ -0.502, 0.731, 0.462 ], "y_axis": [ 0.103, 0.581, -0.807 ], "z_axis": [ -0.859, -0.358, -0.367 ], "quaternion": [ -0.422, 0.266, 0.783, -0.372 ] } }, { "index": 344, "index_chain": 344, "chain_name": "A", "nt_resnum": 346, "nt_name": "G", "nt_code": "G", "nt_id": "///A/346", "linked_nts": [ "///A/345", "///A/347" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart", "alpha": 98.235, "beta": 151.241, "gamma": -20.378, "delta": 88.927, "epsilon": -137.164, "zeta": -79.581, "epsilon_zeta": -57.583, "bb_type": "BI", "chi": -176.460, "glyco_bond": "anti", "C5prime_xyz": [ -0.603, 8.023, 1.517 ], "P_xyz": [ 1.272, 7.689, 3.335 ], "form": "A", "ssZp": 4.768, "Dp": 4.784, "splay_angle": 22.254, "splay_distance": 3.361, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": -111.292, "theta": -144.674, "eta_prime": -62.680, "theta_prime": -134.256, "eta_base": 13.076, "theta_base": -105.310, "v0": 13.909, "v1": -31.385, "v2": 36.048, "v3": -29.093, "v4": 9.682, "amplitude": 36.110, "phase_angle": 356.637, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 98.611, 195.638, 193.403 ], "x_axis": [ 0.977, -0.052, -0.207 ], "y_axis": [ 0.167, 0.791, 0.589 ], "z_axis": [ 0.133, -0.610, 0.781 ], "quaternion": [ 0.942, 0.318, 0.090, -0.058 ] } }, { "index": 345, "index_chain": 345, "chain_name": "A", "nt_resnum": 347, "nt_name": "G", "nt_code": "G", "nt_id": "///A/347", "linked_nts": [ "///A/346", "///A/348" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -53.166, "beta": 166.530, "gamma": 49.951, "delta": 84.550, "epsilon": -157.591, "zeta": -77.481, "epsilon_zeta": -80.109, "bb_type": "BI", "chi": -166.925, "glyco_bond": "anti", "C5prime_xyz": [ -1.110, 8.593, 0.993 ], "P_xyz": [ 1.475, 8.617, 1.431 ], "form": "A", "ssZp": 4.459, "Dp": 4.526, "splay_angle": 22.391, "splay_distance": 3.611, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 169.048, "theta": -116.608, "eta_prime": -173.087, "theta_prime": -125.168, "eta_base": -134.444, "theta_base": -86.973, "v0": 4.185, "v1": -24.268, "v2": 34.054, "v3": -32.621, "v4": 17.951, "amplitude": 34.805, "phase_angle": 11.917, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.717, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 99.262, 192.550, 194.560 ], "x_axis": [ 0.895, 0.436, 0.097 ], "y_axis": [ -0.386, 0.648, 0.657 ], "z_axis": [ 0.223, -0.625, 0.748 ], "quaternion": [ 0.907, 0.353, 0.035, 0.227 ] } }, { "index": 346, "index_chain": 346, "chain_name": "A", "nt_resnum": 348, "nt_name": "U", "nt_code": "U", "nt_id": "///A/348", "linked_nts": [ "///A/347", "///A/349" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 158.905, "beta": -147.337, "gamma": 158.984, "delta": 81.990, "epsilon": -138.507, "zeta": -75.231, "epsilon_zeta": -63.276, "bb_type": "BI", "chi": -178.902, "glyco_bond": "anti", "C5prime_xyz": [ -1.287, 8.335, 1.639 ], "P_xyz": [ 0.801, 9.431, 0.511 ], "form": "A", "ssZp": 4.724, "Dp": 4.722, "splay_angle": 27.810, "splay_distance": 4.372, "splay_ratio": 0.245, "d22": 4.917, "d64": 4.877, "eta": 151.687, "theta": -151.632, "eta_prime": 178.015, "theta_prime": -153.733, "eta_base": -114.888, "theta_base": -135.423, "v0": 4.989, "v1": -26.592, "v2": 36.914, "v3": -35.038, "v4": 18.977, "amplitude": 37.627, "phase_angle": 11.170, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.344, "filter_rmsd": 0.105, "frame": { "rmsd": 0.006, "origin": [ 102.119, 191.332, 196.400 ], "x_axis": [ 0.420, 0.745, 0.518 ], "y_axis": [ -0.848, 0.118, 0.517 ], "z_axis": [ 0.324, -0.656, 0.681 ], "quaternion": [ 0.745, 0.394, -0.065, 0.535 ] } }, { "index": 347, "index_chain": 347, "chain_name": "A", "nt_resnum": 349, "nt_name": "C", "nt_code": "C", "nt_id": "///A/349", "linked_nts": [ "///A/348", "///A/350" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -66.562, "beta": -166.323, "gamma": 39.216, "delta": 81.685, "epsilon": -150.487, "zeta": -82.152, "epsilon_zeta": -68.334, "bb_type": "BI", "chi": -166.936, "glyco_bond": "anti", "C5prime_xyz": [ -1.205, 8.657, 0.958 ], "P_xyz": [ 1.078, 9.041, 2.182 ], "form": "A", "ssZp": 4.541, "Dp": 4.619, "splay_angle": 18.546, "splay_distance": 2.970, "splay_ratio": 0.164, "d22": 4.595, "d64": 4.637, "eta": 166.051, "theta": -160.050, "eta_prime": 173.600, "theta_prime": -156.097, "eta_base": -156.442, "theta_base": -151.693, "v0": 3.134, "v1": -25.032, "v2": 36.177, "v3": -35.357, "v4": 20.330, "amplitude": 37.265, "phase_angle": 13.884, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.568, "filter_rmsd": 0.063, "frame": { "rmsd": 0.005, "origin": [ 105.486, 189.072, 198.034 ], "x_axis": [ -0.255, 0.886, 0.389 ], "y_axis": [ -0.950, -0.305, 0.072 ], "z_axis": [ 0.182, -0.351, 0.919 ], "quaternion": [ 0.583, 0.181, -0.088, 0.787 ] } }, { "index": 348, "index_chain": 348, "chain_name": "A", "nt_resnum": 350, "nt_name": "U", "nt_code": "U", "nt_id": "///A/350", "linked_nts": [ "///A/349", "///A/351" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": -66.059, "beta": 160.238, "gamma": 62.329, "delta": 80.473, "epsilon": -135.068, "zeta": -63.011, "epsilon_zeta": -72.057, "bb_type": "BI", "chi": -160.211, "glyco_bond": "anti", "C5prime_xyz": [ -1.640, 8.759, 0.510 ], "P_xyz": [ 0.895, 9.290, 0.162 ], "form": ".", "ssZp": 4.359, "Dp": 4.666, "splay_angle": 36.003, "splay_distance": 5.627, "splay_ratio": 0.309, "d22": null, "d64": null, "eta": 169.112, "theta": -124.409, "eta_prime": 178.454, "theta_prime": -121.993, "eta_base": -170.190, "theta_base": -76.028, "v0": 0.284, "v1": -23.188, "v2": 35.956, "v3": -36.778, "v4": 22.998, "amplitude": 37.842, "phase_angle": 18.163, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.774, "filter_rmsd": 0.099, "frame": { "rmsd": 0.010, "origin": [ 107.942, 187.993, 199.309 ], "x_axis": [ -0.513, 0.731, 0.449 ], "y_axis": [ -0.750, -0.636, 0.179 ], "z_axis": [ 0.417, -0.245, 0.875 ], "quaternion": [ 0.426, 0.249, -0.019, 0.870 ] } }, { "index": 349, "index_chain": 349, "chain_name": "A", "nt_resnum": 351, "nt_name": "G", "nt_code": "G", "nt_id": "///A/351", "linked_nts": [ "///A/350", "///A/352" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,cap-acceptor,splayed-apart", "alpha": -66.691, "beta": 161.788, "gamma": 64.012, "delta": 81.141, "epsilon": -135.877, "zeta": -77.209, "epsilon_zeta": -58.668, "bb_type": "BI", "chi": -166.657, "glyco_bond": "anti", "C5prime_xyz": [ -1.413, 8.652, 0.889 ], "P_xyz": [ 1.156, 9.026, 0.569 ], "form": ".", "ssZp": 4.582, "Dp": 4.732, "splay_angle": 92.347, "splay_distance": 12.846, "splay_ratio": 0.721, "d22": null, "d64": null, "eta": 164.648, "theta": -118.599, "eta_prime": -168.593, "theta_prime": -163.397, "eta_base": -99.084, "theta_base": 141.229, "v0": 3.130, "v1": -25.507, "v2": 36.933, "v3": -36.111, "v4": 20.810, "amplitude": 38.059, "phase_angle": 13.973, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.720, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 105.913, 189.158, 204.426 ], "x_axis": [ -0.953, -0.130, 0.272 ], "y_axis": [ 0.067, -0.971, -0.228 ], "z_axis": [ 0.294, -0.200, 0.935 ], "quaternion": [ -0.050, 0.144, -0.109, 0.982 ] } }, { "index": 350, "index_chain": 350, "chain_name": "A", "nt_resnum": 352, "nt_name": "G", "nt_code": "G", "nt_id": "///A/352", "linked_nts": [ "///A/351", "///A/353" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": 170.256, "beta": 163.198, "gamma": 45.147, "delta": 87.370, "epsilon": -131.375, "zeta": -89.490, "epsilon_zeta": -41.885, "bb_type": "BI", "chi": -143.401, "glyco_bond": "anti", "C5prime_xyz": [ -1.188, 8.710, -0.395 ], "P_xyz": [ 1.430, 8.874, -0.399 ], "form": ".", "ssZp": 3.613, "Dp": 4.570, "splay_angle": 25.124, "splay_distance": 4.144, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 24.585, "theta": -140.293, "eta_prime": 46.267, "theta_prime": -137.362, "eta_base": 22.123, "theta_base": -98.631, "v0": 2.215, "v1": -21.224, "v2": 31.026, "v3": -30.628, "v4": 17.984, "amplitude": 32.086, "phase_angle": 14.768, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.889, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 118.276, 185.746, 205.171 ], "x_axis": [ 0.010, -0.617, -0.787 ], "y_axis": [ -0.919, -0.316, 0.237 ], "z_axis": [ -0.395, 0.720, -0.570 ], "quaternion": [ -0.176, 0.689, -0.558, -0.429 ] } }, { "index": 351, "index_chain": 351, "chain_name": "A", "nt_resnum": 353, "nt_name": "A", "nt_code": "A", "nt_id": "///A/353", "linked_nts": [ "///A/352", "///A/354" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate", "alpha": -57.544, "beta": 146.408, "gamma": 59.746, "delta": 80.680, "epsilon": -109.777, "zeta": -79.997, "epsilon_zeta": -29.780, "bb_type": "--", "chi": -142.192, "glyco_bond": "anti", "C5prime_xyz": [ -1.208, 8.616, -0.587 ], "P_xyz": [ 1.095, 8.359, -1.792 ], "form": ".", "ssZp": 3.264, "Dp": 4.829, "splay_angle": 47.141, "splay_distance": 7.536, "splay_ratio": 0.400, "d22": null, "d64": null, "eta": 171.182, "theta": -119.458, "eta_prime": -173.346, "theta_prime": -112.840, "eta_base": -125.666, "theta_base": -102.702, "v0": 5.200, "v1": -27.665, "v2": 38.401, "v3": -36.414, "v4": 19.734, "amplitude": 39.139, "phase_angle": 11.145, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.476, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 115.795, 186.845, 202.039 ], "x_axis": [ -0.535, -0.690, -0.488 ], "y_axis": [ -0.814, 0.264, 0.517 ], "z_axis": [ -0.228, 0.674, -0.703 ], "quaternion": [ 0.082, -0.475, 0.791, 0.377 ] } }, { "index": 352, "index_chain": 352, "chain_name": "A", "nt_resnum": 354, "nt_name": "A", "nt_code": "A", "nt_id": "///A/354", "linked_nts": [ "///A/353", "///A/355" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate", "alpha": -44.644, "beta": -159.530, "gamma": 62.210, "delta": 144.507, "epsilon": -152.974, "zeta": -162.780, "epsilon_zeta": 9.806, "bb_type": "--", "chi": -74.653, "glyco_bond": "anti", "C5prime_xyz": [ -3.331, 7.076, -2.859 ], "P_xyz": [ -1.312, 8.318, -3.971 ], "form": ".", "ssZp": 1.630, "Dp": 1.977, "splay_angle": 72.108, "splay_distance": 11.160, "splay_ratio": 0.590, "d22": null, "d64": null, "eta": -158.115, "theta": -167.704, "eta_prime": -130.186, "theta_prime": 133.884, "eta_base": -125.379, "theta_base": 91.773, "v0": -25.415, "v1": 38.451, "v2": -36.053, "v3": 22.314, "v4": 1.718, "amplitude": 38.698, "phase_angle": 158.696, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.276, "filter_rmsd": 0.040, "frame": { "rmsd": 0.011, "origin": [ 110.120, 187.464, 197.121 ], "x_axis": [ -0.634, -0.756, 0.164 ], "y_axis": [ -0.553, 0.591, 0.588 ], "z_axis": [ -0.541, 0.282, -0.792 ], "quaternion": [ -0.203, -0.377, 0.868, 0.250 ] } }, { "index": 353, "index_chain": 353, "chain_name": "A", "nt_resnum": 355, "nt_name": "A", "nt_code": "A", "nt_id": "///A/355", "linked_nts": [ "///A/354", "///A/356" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,phosphate,splayed-apart", "alpha": 43.083, "beta": -153.049, "gamma": 156.929, "delta": 146.903, "epsilon": -106.279, "zeta": -55.624, "epsilon_zeta": -50.655, "bb_type": "--", "chi": -171.707, "glyco_bond": "anti", "C5prime_xyz": [ -1.894, 8.312, 1.593 ], "P_xyz": [ 0.651, 8.801, 1.916 ], "form": ".", "ssZp": 0.947, "Dp": 1.126, "splay_angle": 93.456, "splay_distance": 13.935, "splay_ratio": 0.729, "d22": null, "d64": null, "eta": 88.747, "theta": -71.477, "eta_prime": 81.648, "theta_prime": -82.225, "eta_base": 66.501, "theta_base": -54.841, "v0": -19.296, "v1": 33.822, "v2": -34.665, "v3": 24.410, "v4": -3.438, "amplitude": 35.624, "phase_angle": 166.675, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 116.815, 196.090, 199.425 ], "x_axis": [ -0.005, 0.225, 0.974 ], "y_axis": [ -0.965, 0.254, -0.063 ], "z_axis": [ -0.262, -0.941, 0.216 ], "quaternion": [ 0.605, 0.362, -0.511, 0.492 ] } }, { "index": 354, "index_chain": 354, "chain_name": "A", "nt_resnum": 356, "nt_name": "G", "nt_code": "G", "nt_id": "///A/356", "linked_nts": [ "///A/355", "///A/357" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,splayed-apart", "alpha": -80.072, "beta": -175.688, "gamma": 51.618, "delta": 81.133, "epsilon": -141.678, "zeta": -73.255, "epsilon_zeta": -68.423, "bb_type": "BI", "chi": -171.456, "glyco_bond": "anti", "C5prime_xyz": [ -1.328, 8.606, 1.200 ], "P_xyz": [ 1.147, 8.906, 2.009 ], "form": "A", "ssZp": 4.633, "Dp": 4.678, "splay_angle": 30.565, "splay_distance": 4.733, "splay_ratio": 0.265, "d22": null, "d64": null, "eta": 143.834, "theta": -141.772, "eta_prime": -170.779, "theta_prime": -137.995, "eta_base": -130.279, "theta_base": -107.442, "v0": 2.789, "v1": -24.946, "v2": 36.391, "v3": -35.758, "v4": 20.803, "amplitude": 37.577, "phase_angle": 14.433, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.770, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 104.999, 188.949, 197.536 ], "x_axis": [ -0.397, 0.764, 0.509 ], "y_axis": [ 0.672, 0.619, -0.406 ], "z_axis": [ -0.625, 0.181, -0.759 ], "quaternion": [ -0.340, 0.431, 0.833, -0.067 ] } }, { "index": 355, "index_chain": 355, "chain_name": "A", "nt_resnum": 357, "nt_name": "G", "nt_code": "G", "nt_id": "///A/357", "linked_nts": [ "///A/356", "///A/358" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -69.084, "beta": -179.383, "gamma": 53.991, "delta": 82.885, "epsilon": -140.496, "zeta": -69.256, "epsilon_zeta": -71.240, "bb_type": "BI", "chi": 172.776, "glyco_bond": "anti", "C5prime_xyz": [ -1.739, 8.349, 2.014 ], "P_xyz": [ 0.476, 8.512, 3.394 ], "form": "A", "ssZp": 4.430, "Dp": 4.533, "splay_angle": 24.422, "splay_distance": 3.810, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 170.348, "theta": -135.032, "eta_prime": -178.257, "theta_prime": -131.452, "eta_base": -136.109, "theta_base": -93.093, "v0": -1.734, "v1": -19.783, "v2": 32.489, "v3": -34.403, "v4": 22.813, "amplitude": 34.892, "phase_angle": 21.390, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.952, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 100.854, 189.979, 195.497 ], "x_axis": [ 0.367, 0.739, 0.565 ], "y_axis": [ 0.897, -0.119, -0.426 ], "z_axis": [ -0.248, 0.663, -0.707 ], "quaternion": [ -0.368, 0.740, 0.552, 0.107 ] } }, { "index": 356, "index_chain": 356, "chain_name": "A", "nt_resnum": 358, "nt_name": "C", "nt_code": "C", "nt_id": "///A/358", "linked_nts": [ "///A/357", "///A/359" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -73.165, "beta": -174.154, "gamma": 46.560, "delta": 83.688, "epsilon": -153.057, "zeta": -69.078, "epsilon_zeta": -83.979, "bb_type": "BI", "chi": -164.739, "glyco_bond": "anti", "C5prime_xyz": [ -1.207, 8.663, 0.830 ], "P_xyz": [ 1.258, 8.946, 1.684 ], "form": "A", "ssZp": 4.475, "Dp": 4.570, "splay_angle": 22.062, "splay_distance": 3.498, "splay_ratio": 0.193, "d22": 4.192, "d64": 4.261, "eta": 160.124, "theta": -144.776, "eta_prime": 176.151, "theta_prime": -143.111, "eta_base": -130.131, "theta_base": -115.999, "v0": 2.892, "v1": -23.738, "v2": 34.387, "v3": -33.692, "v4": 19.404, "amplitude": 35.446, "phase_angle": 14.040, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.829, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 99.241, 193.206, 194.273 ], "x_axis": [ 0.910, 0.390, 0.140 ], "y_axis": [ 0.380, -0.652, -0.656 ], "z_axis": [ -0.164, 0.650, -0.742 ], "quaternion": [ -0.359, 0.909, 0.212, -0.007 ] } }, { "index": 357, "index_chain": 357, "chain_name": "A", "nt_resnum": 359, "nt_name": "C", "nt_code": "C", "nt_id": "///A/359", "linked_nts": [ "///A/358", "///A/360" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -70.382, "beta": 172.792, "gamma": 56.924, "delta": 79.612, "epsilon": -165.197, "zeta": -65.454, "epsilon_zeta": -99.743, "bb_type": "BI", "chi": -167.299, "glyco_bond": "anti", "C5prime_xyz": [ -1.356, 8.702, 0.928 ], "P_xyz": [ 1.214, 9.139, 1.159 ], "form": ".", "ssZp": 4.517, "Dp": 4.544, "splay_angle": 19.612, "splay_distance": 3.898, "splay_ratio": 0.203, "d22": 4.968, "d64": 5.835, "eta": 162.417, "theta": -123.233, "eta_prime": 179.029, "theta_prime": -134.633, "eta_base": -136.240, "theta_base": -124.210, "v0": 2.267, "v1": -25.256, "v2": 37.327, "v3": -36.992, "v4": 21.894, "amplitude": 38.693, "phase_angle": 15.269, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.944, "filter_rmsd": 0.061, "frame": { "rmsd": 0.006, "origin": [ 98.806, 196.423, 192.968 ], "x_axis": [ 0.980, -0.066, -0.185 ], "y_axis": [ -0.173, -0.740, -0.650 ], "z_axis": [ -0.094, 0.669, -0.737 ], "quaternion": [ -0.355, 0.930, -0.064, -0.075 ] } }, { "index": 358, "index_chain": 358, "chain_name": "A", "nt_resnum": 360, "nt_name": "C", "nt_code": "C", "nt_id": "///A/360", "linked_nts": [ "///A/359", "///A/361" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,bulge,junction-loop", "alpha": 151.749, "beta": -167.763, "gamma": -170.029, "delta": 82.076, "epsilon": -112.162, "zeta": -95.423, "epsilon_zeta": -16.739, "bb_type": "--", "chi": -164.957, "glyco_bond": "anti", "C5prime_xyz": [ -1.277, 8.718, 0.817 ], "P_xyz": [ -0.222, 10.669, -0.587 ], "form": ".", "ssZp": 4.350, "Dp": 4.705, "splay_angle": 27.395, "splay_distance": 4.989, "splay_ratio": 0.248, "d22": null, "d64": null, "eta": 177.850, "theta": -147.819, "eta_prime": -171.412, "theta_prime": -153.065, "eta_base": -142.992, "theta_base": -133.429, "v0": 0.950, "v1": -22.946, "v2": 34.963, "v3": -35.383, "v4": 21.727, "amplitude": 36.590, "phase_angle": 17.154, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.777, "filter_rmsd": 0.059, "frame": { "rmsd": 0.009, "origin": [ 100.305, 200.021, 193.015 ], "x_axis": [ 0.813, -0.182, -0.552 ], "y_axis": [ -0.570, -0.440, -0.694 ], "z_axis": [ -0.117, 0.879, -0.462 ], "quaternion": [ -0.477, 0.824, -0.228, -0.203 ] } }, { "index": 359, "index_chain": 359, "chain_name": "A", "nt_resnum": 361, "nt_name": "G", "nt_code": "G", "nt_id": "///A/361", "linked_nts": [ "///A/360", "///A/362" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 85.106, "beta": -139.135, "gamma": -127.341, "delta": 84.529, "epsilon": -169.491, "zeta": -76.386, "epsilon_zeta": -93.104, "bb_type": "BI", "chi": -177.318, "glyco_bond": "anti", "C5prime_xyz": [ -1.110, 8.332, 1.579 ], "P_xyz": [ -0.391, 10.772, 0.980 ], "form": "A", "ssZp": 4.443, "Dp": 4.494, "splay_angle": 21.627, "splay_distance": 3.289, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 168.888, "theta": -179.133, "eta_prime": 179.583, "theta_prime": -165.215, "eta_base": -144.517, "theta_base": -120.011, "v0": 6.809, "v1": -27.168, "v2": 36.109, "v3": -33.178, "v4": 16.666, "amplitude": 36.475, "phase_angle": 8.126, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 102.600, 204.117, 191.330 ], "x_axis": [ 0.521, -0.635, -0.569 ], "y_axis": [ -0.853, -0.384, -0.352 ], "z_axis": [ 0.005, 0.670, -0.743 ], "quaternion": [ -0.314, 0.814, -0.457, -0.173 ] } }, { "index": 360, "index_chain": 360, "chain_name": "A", "nt_resnum": 362, "nt_name": "C", "nt_code": "C", "nt_id": "///A/362", "linked_nts": [ "///A/361", "///A/363" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor", "alpha": -164.218, "beta": -132.845, "gamma": 119.297, "delta": 79.810, "epsilon": -149.148, "zeta": -85.387, "epsilon_zeta": -63.762, "bb_type": "BI", "chi": -171.230, "glyco_bond": "anti", "C5prime_xyz": [ -1.539, 8.703, 1.149 ], "P_xyz": [ 1.041, 8.829, 0.770 ], "form": ".", "ssZp": 4.550, "Dp": 4.573, "splay_angle": 31.799, "splay_distance": 4.942, "splay_ratio": 0.275, "d22": 5.069, "d64": 5.476, "eta": 155.101, "theta": -150.050, "eta_prime": 176.617, "theta_prime": -153.920, "eta_base": -128.603, "theta_base": -139.895, "v0": -1.512, "v1": -21.344, "v2": 34.775, "v3": -36.629, "v4": 24.011, "amplitude": 37.217, "phase_angle": 20.872, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.058, "frame": { "rmsd": 0.008, "origin": [ 104.322, 205.654, 188.988 ], "x_axis": [ -0.186, -0.726, -0.662 ], "y_axis": [ -0.977, 0.209, 0.045 ], "z_axis": [ 0.105, 0.655, -0.748 ], "quaternion": [ 0.262, -0.582, 0.732, 0.239 ] } }, { "index": 361, "index_chain": 361, "chain_name": "A", "nt_resnum": 363, "nt_name": "C", "nt_code": "C", "nt_id": "///A/363", "linked_nts": [ "///A/362", "///A/364" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop", "alpha": -54.590, "beta": 172.757, "gamma": 53.654, "delta": 82.215, "epsilon": -141.654, "zeta": -69.792, "epsilon_zeta": -71.862, "bb_type": "BI", "chi": -170.626, "glyco_bond": "anti", "C5prime_xyz": [ -1.379, 8.660, 1.159 ], "P_xyz": [ 1.138, 8.964, 1.796 ], "form": ".", "ssZp": 4.522, "Dp": 4.602, "splay_angle": 24.576, "splay_distance": 3.817, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": -179.153, "theta": -134.777, "eta_prime": -172.240, "theta_prime": -131.345, "eta_base": -146.872, "theta_base": -83.905, "v0": 0.822, "v1": -22.816, "v2": 34.858, "v3": -35.328, "v4": 21.754, "amplitude": 36.513, "phase_angle": 17.314, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.795, "filter_rmsd": 0.062, "frame": { "rmsd": 0.006, "origin": [ 106.928, 208.519, 185.917 ], "x_axis": [ -0.594, -0.639, -0.490 ], "y_axis": [ -0.798, 0.391, 0.458 ], "z_axis": [ -0.101, 0.663, -0.742 ], "quaternion": [ 0.118, -0.435, 0.826, 0.339 ] } }, { "index": 362, "index_chain": 362, "chain_name": "A", "nt_resnum": 364, "nt_name": "A", "nt_code": "A", "nt_id": "///A/364", "linked_nts": [ "///A/363", "///A/365" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -59.822, "beta": 161.335, "gamma": 55.493, "delta": 84.637, "epsilon": -91.863, "zeta": -162.740, "epsilon_zeta": 70.877, "bb_type": "BII", "chi": -169.429, "glyco_bond": "anti", "C5prime_xyz": [ -1.521, 8.590, 1.081 ], "P_xyz": [ 1.067, 8.867, 1.362 ], "form": ".", "ssZp": 4.180, "Dp": 4.547, "splay_angle": 151.501, "splay_distance": 18.775, "splay_ratio": 0.969, "d22": null, "d64": null, "eta": -179.317, "theta": -174.360, "eta_prime": -162.101, "theta_prime": 155.032, "eta_base": -101.398, "theta_base": 158.413, "v0": 0.685, "v1": -21.559, "v2": 33.040, "v3": -33.563, "v4": 20.779, "amplitude": 34.647, "phase_angle": 17.519, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.887, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 105.393, 209.144, 182.478 ], "x_axis": [ -0.982, -0.186, 0.010 ], "y_axis": [ -0.133, 0.736, 0.664 ], "z_axis": [ -0.131, 0.651, -0.748 ], "quaternion": [ -0.038, -0.086, 0.931, 0.353 ] } }, { "index": 363, "index_chain": 363, "chain_name": "A", "nt_resnum": 365, "nt_name": "U", "nt_code": "U", "nt_id": "///A/365", "linked_nts": [ "///A/364", "///A/366" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 54.678, "beta": -131.754, "gamma": 49.543, "delta": 143.930, "epsilon": -96.535, "zeta": -87.459, "epsilon_zeta": -9.077, "bb_type": "--", "chi": -134.362, "glyco_bond": "anti", "C5prime_xyz": [ -1.837, 8.694, -0.529 ], "P_xyz": [ -0.437, 9.737, 1.415 ], "form": ".", "ssZp": 0.913, "Dp": 0.948, "splay_angle": 66.637, "splay_distance": 10.853, "splay_ratio": 0.550, "d22": null, "d64": null, "eta": 4.102, "theta": -64.986, "eta_prime": 16.011, "theta_prime": -77.116, "eta_base": -14.791, "theta_base": -62.832, "v0": -22.335, "v1": 34.990, "v2": -33.619, "v3": 21.622, "v4": 0.247, "amplitude": 35.590, "phase_angle": 160.841, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "7p", "suiteness": 0.240, "filter_rmsd": 0.103, "frame": { "rmsd": 0.005, "origin": [ 112.740, 226.256, 184.870 ], "x_axis": [ -0.777, 0.617, 0.120 ], "y_axis": [ -0.629, -0.760, -0.166 ], "z_axis": [ -0.011, -0.205, 0.979 ], "quaternion": [ 0.332, 0.029, -0.099, 0.938 ] } }, { "index": 364, "index_chain": 364, "chain_name": "A", "nt_resnum": 366, "nt_name": "A", "nt_code": "A", "nt_id": "///A/366", "linked_nts": [ "///A/365", "///A/367" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate", "alpha": -82.623, "beta": -178.129, "gamma": 48.086, "delta": 142.961, "epsilon": -90.365, "zeta": -113.018, "epsilon_zeta": 22.653, "bb_type": "--", "chi": -100.822, "glyco_bond": "anti", "C5prime_xyz": [ -2.516, 8.039, -2.131 ], "P_xyz": [ -0.271, 9.359, -2.326 ], "form": ".", "ssZp": 0.684, "Dp": 0.806, "splay_angle": 81.360, "splay_distance": 12.579, "splay_ratio": 0.653, "d22": null, "d64": null, "eta": 161.398, "theta": -32.428, "eta_prime": -153.055, "theta_prime": -71.454, "eta_base": -135.124, "theta_base": -79.326, "v0": -24.691, "v1": 36.652, "v2": -33.909, "v3": 20.592, "v4": 2.369, "amplitude": 36.689, "phase_angle": 157.550, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.467, "filter_rmsd": 0.038, "frame": { "rmsd": 0.010, "origin": [ 109.371, 219.208, 192.403 ], "x_axis": [ -0.829, 0.406, -0.386 ], "y_axis": [ 0.154, -0.496, -0.854 ], "z_axis": [ -0.538, -0.767, 0.349 ], "quaternion": [ 0.077, -0.283, -0.496, 0.818 ] } }, { "index": 365, "index_chain": 365, "chain_name": "A", "nt_resnum": 367, "nt_name": "G", "nt_code": "G", "nt_id": "///A/367", "linked_nts": [ "///A/366", "///A/368" ], "nt_type": "RNA", "dbn": ")", "summary": "turn,syn,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,splayed-apart", "alpha": 73.426, "beta": 112.619, "gamma": -96.814, "delta": 146.588, "epsilon": -140.565, "zeta": 120.415, "epsilon_zeta": 99.020, "bb_type": "--", "chi": 42.185, "glyco_bond": "syn", "C5prime_xyz": [ -5.558, 4.055, 0.319 ], "P_xyz": [ -8.075, 4.226, -0.397 ], "form": ".", "ssZp": -1.530, "Dp": 1.716, "splay_angle": 104.627, "splay_distance": 17.027, "splay_ratio": 0.792, "d22": null, "d64": null, "eta": 96.403, "theta": 51.353, "eta_prime": 139.807, "theta_prime": 42.010, "eta_base": 161.046, "theta_base": 31.444, "v0": -23.370, "v1": 37.276, "v2": -36.166, "v3": 23.662, "v4": -0.403, "amplitude": 38.069, "phase_angle": 161.807, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 106.939, 208.393, 186.457 ], "x_axis": [ -0.601, -0.674, -0.429 ], "y_axis": [ 0.793, -0.440, -0.421 ], "z_axis": [ 0.095, -0.594, 0.799 ], "quaternion": [ -0.435, -0.099, -0.301, 0.843 ] } }, { "index": 366, "index_chain": 366, "chain_name": "A", "nt_resnum": 368, "nt_name": "G", "nt_code": "G", "nt_id": "///A/368", "linked_nts": [ "///A/367", "///A/369" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,splayed-apart", "alpha": -78.678, "beta": -154.758, "gamma": -80.621, "delta": 81.613, "epsilon": -166.690, "zeta": -70.429, "epsilon_zeta": -96.260, "bb_type": "BI", "chi": -165.927, "glyco_bond": "anti", "C5prime_xyz": [ -1.344, 8.684, 0.861 ], "P_xyz": [ -1.179, 11.246, 1.384 ], "form": ".", "ssZp": 4.480, "Dp": 4.511, "splay_angle": 29.943, "splay_distance": 4.723, "splay_ratio": 0.262, "d22": null, "d64": null, "eta": 89.350, "theta": -166.960, "eta_prime": 83.318, "theta_prime": -152.254, "eta_base": 118.084, "theta_base": -90.227, "v0": 2.668, "v1": -24.622, "v2": 35.970, "v3": -35.360, "v4": 20.642, "amplitude": 37.160, "phase_angle": 14.540, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "0k", "suiteness": 0.443, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 122.073, 211.644, 193.549 ], "x_axis": [ -0.827, 0.130, 0.547 ], "y_axis": [ -0.560, -0.097, -0.823 ], "z_axis": [ -0.054, -0.987, 0.153 ], "quaternion": [ 0.239, 0.171, -0.628, 0.721 ] } }, { "index": 367, "index_chain": 367, "chain_name": "A", "nt_resnum": 369, "nt_name": "A", "nt_code": "A", "nt_id": "///A/369", "linked_nts": [ "///A/368", "///A/370" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 162.317, "beta": -135.647, "gamma": 157.592, "delta": 81.971, "epsilon": -135.644, "zeta": -80.004, "epsilon_zeta": -55.640, "bb_type": "BI", "chi": 177.602, "glyco_bond": "anti", "C5prime_xyz": [ -1.649, 8.465, 1.781 ], "P_xyz": [ 0.708, 9.336, 1.055 ], "form": "A", "ssZp": 4.434, "Dp": 4.515, "splay_angle": 23.355, "splay_distance": 3.783, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 162.596, "theta": -148.264, "eta_prime": -166.768, "theta_prime": -152.203, "eta_base": -91.633, "theta_base": -133.208, "v0": -1.828, "v1": -19.587, "v2": 32.367, "v3": -34.331, "v4": 22.785, "amplitude": 34.802, "phase_angle": 21.559, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.230, "filter_rmsd": 0.046, "frame": { "rmsd": 0.014, "origin": [ 118.659, 209.176, 195.685 ], "x_axis": [ -0.941, 0.040, -0.335 ], "y_axis": [ 0.319, -0.216, -0.923 ], "z_axis": [ -0.110, -0.976, 0.190 ], "quaternion": [ -0.091, -0.145, -0.619, 0.766 ] } }, { "index": 368, "index_chain": 368, "chain_name": "A", "nt_resnum": 370, "nt_name": "G", "nt_code": "G", "nt_id": "///A/370", "linked_nts": [ "///A/369", "///A/371" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -54.698, "beta": 175.233, "gamma": 38.621, "delta": 80.982, "epsilon": -176.882, "zeta": -82.204, "epsilon_zeta": -94.678, "bb_type": "BI", "chi": -159.731, "glyco_bond": "anti", "C5prime_xyz": [ -1.481, 8.778, 0.517 ], "P_xyz": [ 0.957, 9.414, 1.200 ], "form": "A", "ssZp": 4.283, "Dp": 4.361, "splay_angle": 22.088, "splay_distance": 3.663, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 161.902, "theta": -141.711, "eta_prime": 177.234, "theta_prime": -145.290, "eta_base": -145.812, "theta_base": -121.496, "v0": 0.619, "v1": -22.872, "v2": 35.107, "v3": -35.772, "v4": 22.181, "amplitude": 36.850, "phase_angle": 17.690, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.559, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 117.646, 206.509, 198.170 ], "x_axis": [ -0.621, -0.057, -0.782 ], "y_axis": [ 0.773, -0.212, -0.598 ], "z_axis": [ -0.131, -0.976, 0.176 ], "quaternion": [ -0.293, -0.322, -0.555, 0.708 ] } }, { "index": 369, "index_chain": 369, "chain_name": "A", "nt_resnum": 371, "nt_name": "G", "nt_code": "G", "nt_id": "///A/371", "linked_nts": [ "///A/370", "///A/372" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop", "alpha": 164.278, "beta": -141.631, "gamma": 163.441, "delta": 82.894, "epsilon": -125.061, "zeta": -81.441, "epsilon_zeta": -43.620, "bb_type": "--", "chi": 176.071, "glyco_bond": "anti", "C5prime_xyz": [ -1.750, 8.473, 1.830 ], "P_xyz": [ 0.470, 9.653, 1.105 ], "form": "A", "ssZp": 4.421, "Dp": 4.519, "splay_angle": 20.584, "splay_distance": 3.289, "splay_ratio": 0.180, "d22": null, "d64": null, "eta": 172.400, "theta": -147.308, "eta_prime": -172.902, "theta_prime": -147.037, "eta_base": -133.625, "theta_base": -111.138, "v0": -2.152, "v1": -19.542, "v2": 32.518, "v3": -34.718, "v4": 23.260, "amplitude": 35.090, "phase_angle": 22.076, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.421, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 115.381, 203.830, 199.223 ], "x_axis": [ -0.163, -0.110, -0.981 ], "y_axis": [ 0.975, -0.168, -0.143 ], "z_axis": [ -0.149, -0.980, 0.135 ], "quaternion": [ -0.448, -0.467, -0.464, 0.605 ] } }, { "index": 370, "index_chain": 370, "chain_name": "A", "nt_resnum": 372, "nt_name": "U", "nt_code": "U", "nt_id": "///A/372", "linked_nts": [ "///A/371", "///A/373" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,splayed-apart", "alpha": -66.116, "beta": 162.041, "gamma": 59.782, "delta": 85.963, "epsilon": -174.644, "zeta": 52.963, "epsilon_zeta": 132.393, "bb_type": "--", "chi": -157.307, "glyco_bond": "anti", "C5prime_xyz": [ -1.652, 8.792, 0.339 ], "P_xyz": [ 0.915, 9.273, 0.417 ], "form": ".", "ssZp": 3.970, "Dp": 4.121, "splay_angle": 134.896, "splay_distance": 16.333, "splay_ratio": 0.924, "d22": null, "d64": null, "eta": 159.461, "theta": 2.325, "eta_prime": -176.795, "theta_prime": -67.756, "eta_base": -123.466, "theta_base": -149.321, "v0": -4.126, "v1": -15.994, "v2": 28.695, "v3": -31.939, "v4": 22.818, "amplitude": 31.900, "phase_angle": 25.902, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.617, "filter_rmsd": 0.101, "frame": { "rmsd": 0.010, "origin": [ 113.822, 200.975, 198.737 ], "x_axis": [ 0.517, -0.179, -0.837 ], "y_axis": [ 0.823, -0.167, 0.544 ], "z_axis": [ -0.237, -0.970, 0.061 ], "quaternion": [ 0.594, 0.637, 0.253, -0.421 ] } }, { "index": 371, "index_chain": 371, "chain_name": "A", "nt_resnum": 373, "nt_name": "A", "nt_code": "A", "nt_id": "///A/373", "linked_nts": [ "///A/372", "///A/374" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,cap-acceptor,phosphate,splayed-apart", "alpha": 75.716, "beta": 120.316, "gamma": 40.361, "delta": 143.194, "epsilon": -89.071, "zeta": -103.849, "epsilon_zeta": 14.778, "bb_type": "--", "chi": -115.584, "glyco_bond": "anti", "C5prime_xyz": [ -2.153, 8.425, -1.471 ], "P_xyz": [ 0.413, 8.436, -0.980 ], "form": ".", "ssZp": 0.692, "Dp": 0.791, "splay_angle": 72.420, "splay_distance": 11.692, "splay_ratio": 0.591, "d22": null, "d64": null, "eta": -70.208, "theta": -43.676, "eta_prime": 23.597, "theta_prime": -104.811, "eta_base": 80.333, "theta_base": -123.369, "v0": -23.532, "v1": 35.800, "v2": -33.763, "v3": 21.070, "v4": 1.318, "amplitude": 36.129, "phase_angle": 159.148, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5p", "suiteness": 0.170, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 113.746, 190.193, 211.006 ], "x_axis": [ -0.570, 0.668, 0.478 ], "y_axis": [ 0.285, 0.707, -0.647 ], "z_axis": [ -0.770, -0.233, -0.593 ], "quaternion": [ -0.369, 0.281, 0.847, -0.260 ] } }, { "index": 372, "index_chain": 372, "chain_name": "A", "nt_resnum": 374, "nt_name": "A", "nt_code": "A", "nt_id": "///A/374", "linked_nts": [ "///A/373", "///A/375" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,cap-donor", "alpha": -132.154, "beta": -163.535, "gamma": 34.573, "delta": 145.266, "epsilon": -102.612, "zeta": -152.998, "epsilon_zeta": 50.386, "bb_type": "BII", "chi": -77.033, "glyco_bond": "anti", "C5prime_xyz": [ -2.933, 7.173, -2.872 ], "P_xyz": [ -1.087, 8.808, -3.741 ], "form": ".", "ssZp": 0.486, "Dp": 1.021, "splay_angle": 63.098, "splay_distance": 10.415, "splay_ratio": 0.524, "d22": null, "d64": null, "eta": 95.100, "theta": -150.326, "eta_prime": 151.580, "theta_prime": -165.408, "eta_base": 162.004, "theta_base": -176.533, "v0": -22.343, "v1": 35.924, "v2": -34.978, "v3": 23.003, "v4": -0.596, "amplitude": 36.747, "phase_angle": 162.149, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.015, "origin": [ 111.250, 186.543, 200.183 ], "x_axis": [ -0.544, 0.237, 0.805 ], "y_axis": [ 0.527, 0.843, 0.109 ], "z_axis": [ -0.653, 0.483, -0.583 ], "quaternion": [ -0.423, 0.221, 0.862, 0.172 ] } }, { "index": 373, "index_chain": 373, "chain_name": "A", "nt_resnum": 375, "nt_name": "C", "nt_code": "C", "nt_id": "///A/375", "linked_nts": [ "///A/374", "///A/376" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,junction-loop,splayed-apart", "alpha": 179.229, "beta": -174.622, "gamma": 63.612, "delta": 145.668, "epsilon": -121.652, "zeta": -87.392, "epsilon_zeta": -34.260, "bb_type": "--", "chi": -135.158, "glyco_bond": "anti", "C5prime_xyz": [ -1.986, 8.763, -0.451 ], "P_xyz": [ 0.256, 9.593, 0.590 ], "form": ".", "ssZp": 1.392, "Dp": 1.412, "splay_angle": 95.860, "splay_distance": 15.333, "splay_ratio": 0.743, "d22": null, "d64": null, "eta": 108.634, "theta": -66.544, "eta_prime": 127.047, "theta_prime": -95.137, "eta_base": 138.591, "theta_base": -82.368, "v0": -23.879, "v1": 37.227, "v2": -35.626, "v3": 22.783, "v4": 0.475, "amplitude": 37.791, "phase_angle": 160.514, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.059, "frame": { "rmsd": 0.007, "origin": [ 111.836, 189.495, 190.213 ], "x_axis": [ -0.038, -0.848, 0.528 ], "y_axis": [ 0.737, 0.333, 0.588 ], "z_axis": [ -0.675, 0.412, 0.612 ], "quaternion": [ 0.690, 0.064, -0.436, -0.574 ] } }, { "index": 374, "index_chain": 374, "chain_name": "A", "nt_resnum": 376, "nt_name": "A", "nt_code": "A", "nt_id": "///A/376", "linked_nts": [ "///A/375", "///A/377" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,cap-acceptor,splayed-apart", "alpha": 178.321, "beta": 165.000, "gamma": -160.094, "delta": 147.016, "epsilon": -114.937, "zeta": -91.397, "epsilon_zeta": -23.541, "bb_type": "--", "chi": -136.799, "glyco_bond": "anti", "C5prime_xyz": [ -1.771, 8.646, -0.271 ], "P_xyz": [ -0.699, 10.634, -1.582 ], "form": ".", "ssZp": 1.484, "Dp": 1.411, "splay_angle": 98.098, "splay_distance": 14.404, "splay_ratio": 0.756, "d22": null, "d64": null, "eta": -137.816, "theta": -105.456, "eta_prime": -114.016, "theta_prime": -150.990, "eta_base": -97.299, "theta_base": 165.037, "v0": -20.235, "v1": 34.759, "v2": -35.198, "v3": 24.330, "v4": -2.778, "amplitude": 36.345, "phase_angle": 165.565, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 110.328, 200.854, 200.401 ], "x_axis": [ 0.684, -0.201, 0.702 ], "y_axis": [ 0.685, -0.156, -0.712 ], "z_axis": [ 0.252, 0.967, 0.031 ], "quaternion": [ 0.624, -0.673, -0.180, -0.355 ] } }, { "index": 375, "index_chain": 375, "chain_name": "A", "nt_resnum": 377, "nt_name": "G", "nt_code": "G", "nt_id": "///A/377", "linked_nts": [ "///A/376", "///A/378" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,A-minor,splayed-apart", "alpha": 129.514, "beta": 162.052, "gamma": 26.730, "delta": 84.218, "epsilon": -127.657, "zeta": -82.687, "epsilon_zeta": -44.969, "bb_type": "--", "chi": 170.060, "glyco_bond": "anti", "C5prime_xyz": [ -1.775, 8.294, 2.128 ], "P_xyz": [ 0.121, 8.162, 3.933 ], "form": "A", "ssZp": 4.357, "Dp": 4.490, "splay_angle": 21.145, "splay_distance": 3.362, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": -45.874, "theta": -134.544, "eta_prime": 10.980, "theta_prime": -128.503, "eta_base": 45.183, "theta_base": -96.139, "v0": -2.714, "v1": -18.010, "v2": 30.619, "v3": -33.102, "v4": 22.608, "amplitude": 33.316, "phase_angle": 23.212, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 104.178, 206.338, 188.587 ], "x_axis": [ -0.197, -0.736, -0.648 ], "y_axis": [ 0.980, -0.173, -0.101 ], "z_axis": [ -0.038, -0.655, 0.755 ], "quaternion": [ 0.588, 0.235, 0.259, -0.729 ] } }, { "index": 376, "index_chain": 376, "chain_name": "A", "nt_resnum": 378, "nt_name": "C", "nt_code": "C", "nt_id": "///A/378", "linked_nts": [ "///A/377", "///A/379" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,cap-donor,phosphate,splayed-apart", "alpha": -55.654, "beta": 175.296, "gamma": 36.371, "delta": 84.996, "epsilon": 169.956, "zeta": 152.387, "epsilon_zeta": 17.569, "bb_type": "--", "chi": -153.539, "glyco_bond": "anti", "C5prime_xyz": [ -1.203, 8.753, 0.182 ], "P_xyz": [ 1.292, 9.173, 0.868 ], "form": ".", "ssZp": 3.998, "Dp": 4.129, "splay_angle": 114.677, "splay_distance": 15.504, "splay_ratio": 0.842, "d22": 8.056, "d64": 8.832, "eta": 158.672, "theta": 68.255, "eta_prime": 178.204, "theta_prime": 12.593, "eta_base": -135.517, "theta_base": -28.577, "v0": 1.544, "v1": -21.502, "v2": 32.079, "v3": -32.164, "v4": 19.347, "amplitude": 33.386, "phase_angle": 16.083, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.407, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 102.528, 204.310, 190.699 ], "x_axis": [ 0.498, -0.650, -0.573 ], "y_axis": [ 0.864, 0.314, 0.394 ], "z_axis": [ -0.076, -0.691, 0.718 ], "quaternion": [ 0.795, 0.341, 0.156, -0.476 ] } }, { "index": 377, "index_chain": 377, "chain_name": "A", "nt_resnum": 379, "nt_name": "C", "nt_code": "C", "nt_id": "///A/379", "linked_nts": [ "///A/378", "///A/380" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,phosphate,splayed-apart", "alpha": 148.093, "beta": 174.388, "gamma": 57.784, "delta": 84.258, "epsilon": -160.059, "zeta": -64.091, "epsilon_zeta": -95.968, "bb_type": "BI", "chi": -164.278, "glyco_bond": "anti", "C5prime_xyz": [ -1.367, 8.793, 0.765 ], "P_xyz": [ 1.196, 9.154, 1.236 ], "form": "A", "ssZp": 4.309, "Dp": 4.390, "splay_angle": 23.228, "splay_distance": 3.762, "splay_ratio": 0.203, "d22": 4.648, "d64": 4.578, "eta": 40.664, "theta": -141.883, "eta_prime": 91.962, "theta_prime": -142.384, "eta_base": 156.777, "theta_base": -119.860, "v0": -1.778, "v1": -19.267, "v2": 31.691, "v3": -33.573, "v4": 22.315, "amplitude": 34.059, "phase_angle": 21.489, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.008, "origin": [ 115.436, 202.981, 199.184 ], "x_axis": [ -0.120, -0.147, -0.982 ], "y_axis": [ -0.966, 0.243, 0.082 ], "z_axis": [ 0.227, 0.959, -0.171 ], "quaternion": [ 0.488, -0.449, 0.619, 0.420 ] } }, { "index": 378, "index_chain": 378, "chain_name": "A", "nt_resnum": 380, "nt_name": "C", "nt_code": "C", "nt_id": "///A/380", "linked_nts": [ "///A/379", "///A/381" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -80.717, "beta": -173.037, "gamma": 58.568, "delta": 83.397, "epsilon": -152.902, "zeta": -68.856, "epsilon_zeta": -84.045, "bb_type": "BI", "chi": -153.062, "glyco_bond": "anti", "C5prime_xyz": [ -1.476, 8.836, 0.083 ], "P_xyz": [ 1.048, 9.441, 0.381 ], "form": "A", "ssZp": 4.127, "Dp": 4.479, "splay_angle": 26.504, "splay_distance": 4.373, "splay_ratio": 0.230, "d22": 4.621, "d64": 4.875, "eta": 168.741, "theta": -143.982, "eta_prime": -177.846, "theta_prime": -143.142, "eta_base": -142.366, "theta_base": -120.180, "v0": -1.520, "v1": -19.947, "v2": 32.510, "v3": -34.295, "v4": 22.604, "amplitude": 34.830, "phase_angle": 21.033, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.692, "filter_rmsd": 0.059, "frame": { "rmsd": 0.008, "origin": [ 117.577, 205.854, 198.036 ], "x_axis": [ -0.630, -0.054, -0.774 ], "y_axis": [ -0.741, 0.340, 0.579 ], "z_axis": [ 0.232, 0.939, -0.255 ], "quaternion": [ 0.337, -0.266, 0.746, 0.509 ] } }, { "index": 379, "index_chain": 379, "chain_name": "A", "nt_resnum": 381, "nt_name": "U", "nt_code": "U", "nt_id": "///A/381", "linked_nts": [ "///A/380", "///A/382" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -67.950, "beta": 171.729, "gamma": 60.504, "delta": 77.112, "epsilon": -154.962, "zeta": -10.524, "epsilon_zeta": -144.439, "bb_type": "--", "chi": -154.071, "glyco_bond": "anti", "C5prime_xyz": [ -1.718, 8.855, 0.120 ], "P_xyz": [ 0.734, 9.669, -0.201 ], "form": ".", "ssZp": 4.262, "Dp": 4.574, "splay_angle": 32.817, "splay_distance": 5.722, "splay_ratio": 0.292, "d22": null, "d64": null, "eta": 168.965, "theta": -102.499, "eta_prime": -175.657, "theta_prime": -111.056, "eta_base": -139.280, "theta_base": -73.556, "v0": -2.447, "v1": -21.955, "v2": 36.588, "v3": -39.047, "v4": 26.127, "amplitude": 39.482, "phase_angle": 22.074, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.877, "filter_rmsd": 0.096, "frame": { "rmsd": 0.010, "origin": [ 118.672, 209.312, 195.594 ], "x_axis": [ -0.916, 0.090, -0.390 ], "y_axis": [ -0.339, 0.346, 0.875 ], "z_axis": [ 0.214, 0.934, -0.287 ], "quaternion": [ 0.189, -0.078, 0.798, 0.566 ] } }, { "index": 380, "index_chain": 380, "chain_name": "A", "nt_resnum": 382, "nt_name": "G", "nt_code": "G", "nt_id": "///A/382", "linked_nts": [ "///A/381", "///A/383" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop", "alpha": -152.586, "beta": 129.720, "gamma": 151.687, "delta": 82.639, "epsilon": -148.369, "zeta": -68.274, "epsilon_zeta": -80.094, "bb_type": "BI", "chi": -176.676, "glyco_bond": "anti", "C5prime_xyz": [ -1.335, 8.453, 1.491 ], "P_xyz": [ -0.514, 10.541, 0.142 ], "form": "A", "ssZp": 4.641, "Dp": 4.649, "splay_angle": 23.766, "splay_distance": 3.597, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 169.382, "theta": 179.745, "eta_prime": -165.827, "theta_prime": -169.313, "eta_base": -99.643, "theta_base": -124.521, "v0": 4.023, "v1": -25.489, "v2": 36.009, "v3": -34.708, "v4": 19.384, "amplitude": 36.884, "phase_angle": 12.506, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 114.102, 212.097, 193.570 ], "x_axis": [ -0.886, 0.168, 0.432 ], "y_axis": [ 0.463, 0.333, 0.821 ], "z_axis": [ -0.006, 0.928, -0.373 ], "quaternion": [ -0.136, 0.196, 0.805, 0.543 ] } }, { "index": 381, "index_chain": 381, "chain_name": "A", "nt_resnum": 383, "nt_name": "U", "nt_code": "U", "nt_id": "///A/383", "linked_nts": [ "///A/382", "///A/384" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate", "alpha": -69.339, "beta": 174.322, "gamma": 58.580, "delta": 85.312, "epsilon": -143.717, "zeta": -62.935, "epsilon_zeta": -80.781, "bb_type": "BI", "chi": -168.004, "glyco_bond": "anti", "C5prime_xyz": [ -1.238, 8.532, 1.030 ], "P_xyz": [ 1.358, 8.671, 1.380 ], "form": ".", "ssZp": 4.535, "Dp": 4.626, "splay_angle": 43.444, "splay_distance": 6.618, "splay_ratio": 0.370, "d22": null, "d64": null, "eta": 169.892, "theta": -128.714, "eta_prime": -172.618, "theta_prime": -125.219, "eta_base": -117.131, "theta_base": -97.736, "v0": 4.096, "v1": -24.295, "v2": 34.101, "v3": -32.682, "v4": 18.054, "amplitude": 34.865, "phase_angle": 12.019, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.909, "filter_rmsd": 0.104, "frame": { "rmsd": 0.010, "origin": [ 112.292, 214.889, 192.201 ], "x_axis": [ -0.334, 0.379, 0.863 ], "y_axis": [ 0.942, 0.141, 0.303 ], "z_axis": [ -0.007, 0.915, -0.404 ], "quaternion": [ -0.317, 0.482, 0.685, 0.444 ] } }, { "index": 382, "index_chain": 382, "chain_name": "A", "nt_resnum": 384, "nt_name": "A", "nt_code": "A", "nt_id": "///A/384", "linked_nts": [ "///A/383", "///A/385" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -73.560, "beta": -155.278, "gamma": 51.406, "delta": 84.738, "epsilon": -159.299, "zeta": -68.877, "epsilon_zeta": -90.422, "bb_type": "BI", "chi": -162.634, "glyco_bond": "anti", "C5prime_xyz": [ -1.099, 8.604, 0.742 ], "P_xyz": [ 1.249, 8.757, 1.892 ], "form": ".", "ssZp": 4.391, "Dp": 4.504, "splay_angle": 30.276, "splay_distance": 4.885, "splay_ratio": 0.264, "d22": null, "d64": null, "eta": 177.632, "theta": -109.596, "eta_prime": -168.382, "theta_prime": -109.415, "eta_base": -129.992, "theta_base": -61.331, "v0": 3.515, "v1": -23.735, "v2": 33.810, "v3": -32.738, "v4": 18.476, "amplitude": 34.695, "phase_angle": 12.969, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.560, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 111.387, 221.427, 191.721 ], "x_axis": [ 0.360, -0.046, 0.932 ], "y_axis": [ 0.808, -0.483, -0.336 ], "z_axis": [ 0.466, 0.874, -0.137 ], "quaternion": [ -0.430, 0.704, 0.271, 0.497 ] } }, { "index": 383, "index_chain": 383, "chain_name": "A", "nt_resnum": 385, "nt_name": "G", "nt_code": "G", "nt_id": "///A/385", "linked_nts": [ "///A/384", "///A/386" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 150.930, "beta": -137.151, "gamma": 164.972, "delta": 83.341, "epsilon": -99.770, "zeta": -114.284, "epsilon_zeta": 14.515, "bb_type": "--", "chi": 176.845, "glyco_bond": "anti", "C5prime_xyz": [ -1.688, 8.422, 1.810 ], "P_xyz": [ 0.482, 9.565, 0.900 ], "form": "A", "ssZp": 4.445, "Dp": 4.535, "splay_angle": 19.773, "splay_distance": 3.358, "splay_ratio": 0.175, "d22": null, "d64": null, "eta": 168.021, "theta": -129.230, "eta_prime": -163.567, "theta_prime": -139.097, "eta_base": -91.660, "theta_base": -102.710, "v0": -0.593, "v1": -20.850, "v2": 33.131, "v3": -34.440, "v4": 22.062, "amplitude": 35.162, "phase_angle": 19.568, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.475, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 114.700, 223.462, 194.678 ], "x_axis": [ 0.831, -0.455, 0.320 ], "y_axis": [ 0.250, -0.209, -0.946 ], "z_axis": [ 0.497, 0.866, -0.060 ], "quaternion": [ 0.625, -0.725, 0.071, -0.282 ] } }, { "index": 384, "index_chain": 384, "chain_name": "A", "nt_resnum": 386, "nt_name": "U", "nt_code": "U", "nt_id": "///A/386", "linked_nts": [ "///A/385", "///A/387" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 93.452, "beta": -114.075, "gamma": -158.222, "delta": 85.472, "epsilon": -107.998, "zeta": -54.961, "epsilon_zeta": -53.037, "bb_type": "--", "chi": 179.204, "glyco_bond": "anti", "C5prime_xyz": [ -1.214, 8.277, 1.779 ], "P_xyz": [ 0.152, 9.916, 0.273 ], "form": ".", "ssZp": 4.594, "Dp": 4.671, "splay_angle": 28.147, "splay_distance": 4.801, "splay_ratio": 0.250, "d22": 4.754, "d64": 5.378, "eta": 161.100, "theta": -140.414, "eta_prime": 177.965, "theta_prime": -144.935, "eta_base": -124.680, "theta_base": -120.223, "v0": 4.547, "v1": -24.271, "v2": 33.767, "v3": -32.065, "v4": 17.374, "amplitude": 34.425, "phase_angle": 11.224, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.008, "origin": [ 117.289, 225.202, 195.923 ], "x_axis": [ 0.813, -0.499, -0.300 ], "y_axis": [ -0.212, 0.226, -0.951 ], "z_axis": [ 0.542, 0.837, 0.078 ], "quaternion": [ 0.727, -0.614, 0.289, -0.098 ] } }, { "index": 385, "index_chain": 385, "chain_name": "A", "nt_resnum": 387, "nt_name": "C", "nt_code": "C", "nt_id": "///A/387", "linked_nts": [ "///A/386", "///A/388" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop", "alpha": -121.075, "beta": 124.582, "gamma": 136.309, "delta": 81.829, "epsilon": -96.001, "zeta": -108.083, "epsilon_zeta": 12.082, "bb_type": "--", "chi": -178.568, "glyco_bond": "anti", "C5prime_xyz": [ -1.231, 8.443, 1.618 ], "P_xyz": [ 0.051, 10.175, 0.141 ], "form": ".", "ssZp": 4.556, "Dp": 4.694, "splay_angle": 23.843, "splay_distance": 4.213, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 167.871, "theta": -146.794, "eta_prime": -175.295, "theta_prime": -151.188, "eta_base": -134.908, "theta_base": -133.570, "v0": 3.209, "v1": -24.765, "v2": 35.714, "v3": -34.846, "v4": 19.966, "amplitude": 36.763, "phase_angle": 13.721, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.007, "origin": [ 121.456, 227.236, 197.166 ], "x_axis": [ 0.560, -0.312, -0.767 ], "y_axis": [ -0.596, 0.492, -0.635 ], "z_axis": [ 0.575, 0.813, 0.089 ], "quaternion": [ 0.732, -0.495, 0.459, 0.097 ] } }, { "index": 386, "index_chain": 386, "chain_name": "A", "nt_resnum": 388, "nt_name": "A", "nt_code": "A", "nt_id": "///A/388", "linked_nts": [ "///A/387", "///A/389" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": 80.584, "beta": -110.159, "gamma": -138.803, "delta": 83.262, "epsilon": -103.849, "zeta": -100.865, "epsilon_zeta": -2.984, "bb_type": "--", "chi": 172.230, "glyco_bond": "anti", "C5prime_xyz": [ -1.331, 8.013, 2.088 ], "P_xyz": [ -0.724, 10.318, 1.017 ], "form": ".", "ssZp": 4.811, "Dp": 4.813, "splay_angle": 32.725, "splay_distance": 5.261, "splay_ratio": 0.288, "d22": null, "d64": null, "eta": 171.672, "theta": 173.804, "eta_prime": -176.900, "theta_prime": -163.053, "eta_base": -142.694, "theta_base": -170.757, "v0": 7.127, "v1": -28.023, "v2": 37.149, "v3": -34.060, "v4": 17.018, "amplitude": 37.508, "phase_angle": 7.931, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 125.368, 228.670, 197.796 ], "x_axis": [ 0.296, -0.137, -0.945 ], "y_axis": [ -0.754, 0.574, -0.319 ], "z_axis": [ 0.587, 0.807, 0.067 ], "quaternion": [ 0.696, -0.405, 0.550, 0.222 ] } }, { "index": 387, "index_chain": 387, "chain_name": "A", "nt_resnum": 389, "nt_name": "A", "nt_code": "A", "nt_id": "///A/389", "linked_nts": [ "///A/388", "///A/390" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": -64.152, "beta": -165.211, "gamma": 46.381, "delta": 143.575, "epsilon": -102.968, "zeta": 131.815, "epsilon_zeta": 125.217, "bb_type": "BII", "chi": -107.716, "glyco_bond": "anti", "C5prime_xyz": [ -2.134, 8.224, -1.850 ], "P_xyz": [ 0.063, 9.593, -1.471 ], "form": ".", "ssZp": 0.945, "Dp": 1.157, "splay_angle": 41.005, "splay_distance": 6.735, "splay_ratio": 0.368, "d22": null, "d64": null, "eta": -166.721, "theta": 148.572, "eta_prime": -157.238, "theta_prime": 146.787, "eta_base": -174.466, "theta_base": 168.140, "v0": -22.157, "v1": 34.791, "v2": -33.432, "v3": 21.527, "v4": 0.196, "amplitude": 35.378, "phase_angle": 160.907, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.086, "filter_rmsd": 0.039, "frame": { "rmsd": 0.009, "origin": [ 129.594, 230.138, 200.564 ], "x_axis": [ -0.266, -0.461, -0.847 ], "y_axis": [ -0.627, 0.750, -0.212 ], "z_axis": [ 0.733, 0.475, -0.488 ], "quaternion": [ 0.499, -0.344, 0.791, 0.083 ] } }, { "index": 388, "index_chain": 388, "chain_name": "A", "nt_resnum": 390, "nt_name": "A", "nt_code": "A", "nt_id": "///A/390", "linked_nts": [ "///A/389", "///A/391" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,A-minor", "alpha": 164.267, "beta": -136.559, "gamma": 78.799, "delta": 85.639, "epsilon": -135.188, "zeta": -59.949, "epsilon_zeta": -75.239, "bb_type": "BI", "chi": 179.006, "glyco_bond": "--", "C5prime_xyz": [ -1.265, 8.192, 1.752 ], "P_xyz": [ 1.139, 7.558, 2.595 ], "form": ".", "ssZp": 4.717, "Dp": 4.723, "splay_angle": 28.981, "splay_distance": 4.422, "splay_ratio": 0.253, "d22": null, "d64": null, "eta": 146.980, "theta": -111.002, "eta_prime": 130.765, "theta_prime": -109.006, "eta_base": 153.845, "theta_base": -63.548, "v0": 6.824, "v1": -26.750, "v2": 35.442, "v3": -32.471, "v4": 16.238, "amplitude": 35.781, "phase_angle": 7.899, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.011, "origin": [ 132.009, 234.185, 205.375 ], "x_axis": [ -0.385, -0.513, -0.767 ], "y_axis": [ -0.822, 0.569, 0.031 ], "z_axis": [ 0.420, 0.643, -0.641 ], "quaternion": [ 0.369, -0.414, 0.805, 0.209 ] } }, { "index": 389, "index_chain": 389, "chain_name": "A", "nt_resnum": 391, "nt_name": "A", "nt_code": "A", "nt_id": "///A/391", "linked_nts": [ "///A/390", "///A/392" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -63.200, "beta": 174.975, "gamma": 48.488, "delta": 82.464, "epsilon": 173.285, "zeta": -84.074, "epsilon_zeta": -102.641, "bb_type": "BI", "chi": -163.636, "glyco_bond": "anti", "C5prime_xyz": [ -1.242, 8.621, 0.789 ], "P_xyz": [ 1.310, 8.869, 1.340 ], "form": "A", "ssZp": 4.230, "Dp": 4.268, "splay_angle": 21.720, "splay_distance": 3.347, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": 158.248, "theta": -147.001, "eta_prime": -171.190, "theta_prime": -148.109, "eta_base": -93.638, "theta_base": -129.269, "v0": 3.378, "v1": -24.581, "v2": 35.284, "v3": -34.315, "v4": 19.535, "amplitude": 36.273, "phase_angle": 13.410, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.808, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 131.918, 234.596, 200.974 ], "x_axis": [ -0.909, 0.183, -0.375 ], "y_axis": [ -0.107, 0.766, 0.634 ], "z_axis": [ 0.403, 0.616, -0.677 ], "quaternion": [ 0.212, 0.021, 0.915, 0.341 ] } }, { "index": 390, "index_chain": 390, "chain_name": "A", "nt_resnum": 392, "nt_name": "C", "nt_code": "C", "nt_id": "///A/392", "linked_nts": [ "///A/391", "///A/393" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -170.666, "beta": -128.060, "gamma": 130.891, "delta": 80.599, "epsilon": -161.648, "zeta": -74.280, "epsilon_zeta": -87.368, "bb_type": "BI", "chi": -170.627, "glyco_bond": "anti", "C5prime_xyz": [ -1.650, 8.776, 1.090 ], "P_xyz": [ 0.900, 8.946, 0.563 ], "form": ".", "ssZp": 4.307, "Dp": 4.374, "splay_angle": 26.112, "splay_distance": 4.198, "splay_ratio": 0.228, "d22": 3.651, "d64": 3.756, "eta": 161.852, "theta": -112.233, "eta_prime": -179.858, "theta_prime": -127.794, "eta_base": -145.118, "theta_base": -84.253, "v0": -3.900, "v1": -18.523, "v2": 32.573, "v3": -35.771, "v4": 25.003, "amplitude": 35.859, "phase_angle": 24.720, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.006, "origin": [ 133.447, 235.128, 198.045 ], "x_axis": [ -0.843, 0.537, -0.022 ], "y_axis": [ 0.382, 0.628, 0.678 ], "z_axis": [ 0.377, 0.563, -0.735 ], "quaternion": [ 0.111, 0.257, 0.895, 0.346 ] } }, { "index": 391, "index_chain": 391, "chain_name": "A", "nt_resnum": 393, "nt_name": "U", "nt_code": "U", "nt_id": "///A/393", "linked_nts": [ "///A/392", "///A/394" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 163.630, "beta": -143.786, "gamma": 153.152, "delta": 81.796, "epsilon": -94.656, "zeta": -157.338, "epsilon_zeta": 62.682, "bb_type": "BII", "chi": -179.894, "glyco_bond": "anti", "C5prime_xyz": [ -1.642, 8.456, 1.647 ], "P_xyz": [ 0.621, 9.452, 0.821 ], "form": ".", "ssZp": 4.453, "Dp": 4.582, "splay_angle": 28.479, "splay_distance": 4.480, "splay_ratio": 0.247, "d22": 5.654, "d64": 5.222, "eta": 164.724, "theta": -177.771, "eta_prime": -173.910, "theta_prime": -168.029, "eta_base": -104.059, "theta_base": -170.205, "v0": 0.002, "v1": -22.014, "v2": 34.383, "v3": -35.365, "v4": 22.297, "amplitude": 36.282, "phase_angle": 18.616, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.131, "filter_rmsd": 0.103, "frame": { "rmsd": 0.005, "origin": [ 132.333, 238.427, 195.700 ], "x_axis": [ -0.261, 0.818, 0.512 ], "y_axis": [ 0.903, 0.019, 0.430 ], "z_axis": [ 0.342, 0.575, -0.744 ], "quaternion": [ -0.060, 0.605, 0.711, 0.353 ] } }, { "index": 392, "index_chain": 392, "chain_name": "A", "nt_resnum": 394, "nt_name": "U", "nt_code": "U", "nt_id": "///A/394", "linked_nts": [ "///A/393", "///A/395" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -12.711, "beta": 120.028, "gamma": 13.802, "delta": 78.999, "epsilon": 175.495, "zeta": -87.693, "epsilon_zeta": -96.812, "bb_type": "BI", "chi": -140.773, "glyco_bond": "anti", "C5prime_xyz": [ -1.668, 8.766, -0.641 ], "P_xyz": [ 0.925, 8.835, -0.371 ], "form": "A", "ssZp": 3.851, "Dp": 4.300, "splay_angle": 26.471, "splay_distance": 4.316, "splay_ratio": 0.230, "d22": 4.507, "d64": 4.980, "eta": 160.987, "theta": -138.788, "eta_prime": 166.651, "theta_prime": -144.984, "eta_base": 168.146, "theta_base": -126.557, "v0": -1.466, "v1": -21.745, "v2": 35.382, "v3": -37.212, "v4": 24.391, "amplitude": 37.844, "phase_angle": 20.781, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 132.823, 238.107, 191.258 ], "x_axis": [ -0.108, 0.669, 0.736 ], "y_axis": [ 0.985, -0.029, 0.171 ], "z_axis": [ 0.136, 0.743, -0.655 ], "quaternion": [ -0.228, 0.628, 0.658, 0.347 ] } }, { "index": 393, "index_chain": 393, "chain_name": "A", "nt_resnum": 395, "nt_name": "C", "nt_code": "C", "nt_id": "///A/395", "linked_nts": [ "///A/394", "///A/396" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 162.015, "beta": -133.803, "gamma": 169.268, "delta": 84.014, "epsilon": -117.934, "zeta": -106.976, "epsilon_zeta": -10.958, "bb_type": "--", "chi": -169.911, "glyco_bond": "anti", "C5prime_xyz": [ -1.369, 8.689, 1.098 ], "P_xyz": [ 0.581, 9.576, -0.407 ], "form": "A", "ssZp": 4.379, "Dp": 4.574, "splay_angle": 22.720, "splay_distance": 3.832, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": -176.496, "theta": -129.317, "eta_prime": -165.625, "theta_prime": -144.665, "eta_base": -133.061, "theta_base": -120.629, "v0": -0.949, "v1": -19.859, "v2": 31.911, "v3": -33.386, "v4": 21.669, "amplitude": 34.004, "phase_angle": 20.205, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.359, "filter_rmsd": 0.062, "frame": { "rmsd": 0.006, "origin": [ 132.272, 241.825, 189.136 ], "x_axis": [ 0.341, 0.600, 0.723 ], "y_axis": [ 0.933, -0.309, -0.184 ], "z_axis": [ 0.113, 0.738, -0.665 ], "quaternion": [ -0.303, 0.761, 0.504, 0.275 ] } }, { "index": 394, "index_chain": 394, "chain_name": "A", "nt_resnum": 396, "nt_name": "G", "nt_code": "G", "nt_id": "///A/396", "linked_nts": [ "///A/395", "///A/397" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 123.310, "beta": -136.506, "gamma": -179.705, "delta": 81.852, "epsilon": -126.377, "zeta": -91.091, "epsilon_zeta": -35.286, "bb_type": "--", "chi": 171.489, "glyco_bond": "anti", "C5prime_xyz": [ -1.667, 8.203, 2.116 ], "P_xyz": [ 0.150, 9.834, 1.191 ], "form": "A", "ssZp": 4.685, "Dp": 4.704, "splay_angle": 23.868, "splay_distance": 3.713, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 142.068, "theta": -164.306, "eta_prime": 163.054, "theta_prime": -160.978, "eta_base": -150.023, "theta_base": -134.528, "v0": 2.205, "v1": -23.801, "v2": 35.166, "v3": -34.908, "v4": 20.630, "amplitude": 36.452, "phase_angle": 15.262, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 132.197, 245.529, 188.156 ], "x_axis": [ 0.651, -0.049, 0.758 ], "y_axis": [ 0.596, -0.585, -0.550 ], "z_axis": [ 0.470, 0.810, -0.351 ], "quaternion": [ -0.423, 0.804, 0.170, 0.382 ] } }, { "index": 395, "index_chain": 395, "chain_name": "A", "nt_resnum": 397, "nt_name": "U", "nt_code": "U", "nt_id": "///A/397", "linked_nts": [ "///A/396", "///A/398" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -49.962, "beta": 163.763, "gamma": 45.338, "delta": 81.511, "epsilon": -148.337, "zeta": -73.433, "epsilon_zeta": -74.904, "bb_type": "BI", "chi": -167.155, "glyco_bond": "anti", "C5prime_xyz": [ -1.441, 8.654, 0.953 ], "P_xyz": [ 1.093, 8.986, 1.476 ], "form": "A", "ssZp": 4.491, "Dp": 4.587, "splay_angle": 22.136, "splay_distance": 3.527, "splay_ratio": 0.194, "d22": 4.176, "d64": 4.287, "eta": 167.879, "theta": -143.260, "eta_prime": -179.363, "theta_prime": -143.092, "eta_base": -141.897, "theta_base": -115.817, "v0": 1.103, "v1": -23.142, "v2": 35.171, "v3": -35.524, "v4": 21.707, "amplitude": 36.768, "phase_angle": 16.948, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.477, "filter_rmsd": 0.100, "frame": { "rmsd": 0.006, "origin": [ 132.702, 249.193, 188.472 ], "x_axis": [ 0.861, -0.403, 0.308 ], "y_axis": [ 0.116, -0.435, -0.893 ], "z_axis": [ 0.494, 0.805, -0.328 ], "quaternion": [ 0.524, -0.810, 0.089, -0.248 ] } }, { "index": 396, "index_chain": 396, "chain_name": "A", "nt_resnum": 398, "nt_name": "U", "nt_code": "U", "nt_id": "///A/398", "linked_nts": [ "///A/397", "///A/399" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -58.297, "beta": 168.238, "gamma": 48.648, "delta": 78.139, "epsilon": -154.720, "zeta": -77.159, "epsilon_zeta": -77.561, "bb_type": "BI", "chi": -165.721, "glyco_bond": "anti", "C5prime_xyz": [ -1.502, 8.695, 0.841 ], "P_xyz": [ 1.047, 9.225, 1.101 ], "form": "A", "ssZp": 4.569, "Dp": 4.635, "splay_angle": 24.588, "splay_distance": 3.772, "splay_ratio": 0.214, "d22": 4.271, "d64": 4.574, "eta": 163.621, "theta": -154.603, "eta_prime": 178.678, "theta_prime": -153.224, "eta_base": -135.921, "theta_base": -125.729, "v0": 1.513, "v1": -25.027, "v2": 37.772, "v3": -37.866, "v4": 22.890, "amplitude": 39.374, "phase_angle": 16.401, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.913, "filter_rmsd": 0.101, "frame": { "rmsd": 0.005, "origin": [ 134.806, 251.976, 188.988 ], "x_axis": [ 0.773, -0.593, -0.224 ], "y_axis": [ -0.358, -0.117, -0.927 ], "z_axis": [ 0.523, 0.797, -0.302 ], "quaternion": [ 0.582, -0.740, 0.321, -0.101 ] } }, { "index": 397, "index_chain": 397, "chain_name": "A", "nt_resnum": 399, "nt_name": "C", "nt_code": "C", "nt_id": "///A/399", "linked_nts": [ "///A/398", "///A/400" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -56.573, "beta": 163.809, "gamma": 58.054, "delta": 79.744, "epsilon": -135.319, "zeta": -76.517, "epsilon_zeta": -58.802, "bb_type": "BI", "chi": -171.962, "glyco_bond": "anti", "C5prime_xyz": [ -1.263, 8.593, 1.231 ], "P_xyz": [ 1.336, 8.819, 1.366 ], "form": "A", "ssZp": 4.666, "Dp": 4.735, "splay_angle": 25.664, "splay_distance": 3.907, "splay_ratio": 0.222, "d22": 3.722, "d64": 3.998, "eta": 175.725, "theta": -138.398, "eta_prime": -173.055, "theta_prime": -137.179, "eta_base": -133.094, "theta_base": -99.830, "v0": 3.466, "v1": -26.231, "v2": 37.830, "v3": -36.792, "v4": 21.008, "amplitude": 38.916, "phase_angle": 13.570, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.859, "filter_rmsd": 0.062, "frame": { "rmsd": 0.005, "origin": [ 137.662, 254.427, 189.244 ], "x_axis": [ 0.467, -0.564, -0.681 ], "y_axis": [ -0.723, 0.200, -0.661 ], "z_axis": [ 0.509, 0.801, -0.315 ], "quaternion": [ 0.581, -0.629, 0.512, 0.068 ] } }, { "index": 398, "index_chain": 398, "chain_name": "A", "nt_resnum": 400, "nt_name": "U", "nt_code": "U", "nt_id": "///A/400", "linked_nts": [ "///A/399", "///A/401" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge", "alpha": -61.837, "beta": 152.049, "gamma": 65.344, "delta": 80.480, "epsilon": -144.731, "zeta": -55.469, "epsilon_zeta": -89.262, "bb_type": "BI", "chi": 178.651, "glyco_bond": "anti", "C5prime_xyz": [ -1.436, 8.327, 1.742 ], "P_xyz": [ 1.155, 8.658, 1.602 ], "form": ".", "ssZp": 4.729, "Dp": 4.705, "splay_angle": 34.268, "splay_distance": 5.064, "splay_ratio": 0.297, "d22": 3.759, "d64": 3.957, "eta": 163.509, "theta": -123.132, "eta_prime": -175.183, "theta_prime": -123.666, "eta_base": -113.305, "theta_base": -79.832, "v0": 4.369, "v1": -26.616, "v2": 37.544, "v3": -35.991, "v4": 19.943, "amplitude": 38.409, "phase_angle": 12.184, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.609, "filter_rmsd": 0.104, "frame": { "rmsd": 0.005, "origin": [ 140.723, 255.946, 187.349 ], "x_axis": [ -0.113, -0.309, -0.944 ], "y_axis": [ -0.870, 0.489, -0.056 ], "z_axis": [ 0.479, 0.816, -0.325 ], "quaternion": [ 0.513, -0.425, 0.694, 0.274 ] } }, { "index": 399, "index_chain": 399, "chain_name": "A", "nt_resnum": 401, "nt_name": "C", "nt_code": "C", "nt_id": "///A/401", "linked_nts": [ "///A/400", "///A/402" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor", "alpha": -74.942, "beta": -174.881, "gamma": 58.679, "delta": 85.029, "epsilon": -152.984, "zeta": -68.025, "epsilon_zeta": -84.959, "bb_type": "BI", "chi": -172.724, "glyco_bond": "anti", "C5prime_xyz": [ -1.109, 8.509, 1.331 ], "P_xyz": [ 1.389, 8.470, 2.148 ], "form": "A", "ssZp": 4.500, "Dp": 4.551, "splay_angle": 20.648, "splay_distance": 3.225, "splay_ratio": 0.181, "d22": 4.415, "d64": 4.131, "eta": 168.005, "theta": -140.040, "eta_prime": -168.148, "theta_prime": -138.780, "eta_base": -97.863, "theta_base": -116.172, "v0": 4.018, "v1": -24.250, "v2": 34.132, "v3": -32.789, "v4": 18.149, "amplitude": 34.917, "phase_angle": 12.178, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.733, "filter_rmsd": 0.066, "frame": { "rmsd": 0.007, "origin": [ 142.030, 258.064, 182.940 ], "x_axis": [ -0.854, 0.179, -0.488 ], "y_axis": [ -0.387, 0.408, 0.827 ], "z_axis": [ 0.347, 0.896, -0.279 ], "quaternion": [ 0.262, -0.065, 0.797, 0.540 ] } }, { "index": 400, "index_chain": 400, "chain_name": "A", "nt_resnum": 402, "nt_name": "U", "nt_code": "U", "nt_id": "///A/402", "linked_nts": [ "///A/401", "///A/403" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -76.834, "beta": -176.773, "gamma": 55.689, "delta": 84.416, "epsilon": -159.259, "zeta": -70.420, "epsilon_zeta": -88.840, "bb_type": "BI", "chi": -161.055, "glyco_bond": "anti", "C5prime_xyz": [ -1.341, 8.665, 0.614 ], "P_xyz": [ 1.209, 8.975, 1.150 ], "form": "A", "ssZp": 4.338, "Dp": 4.492, "splay_angle": 19.559, "splay_distance": 3.092, "splay_ratio": 0.171, "d22": 4.433, "d64": 4.126, "eta": 164.350, "theta": -147.471, "eta_prime": 179.683, "theta_prime": -147.375, "eta_base": -141.513, "theta_base": -124.582, "v0": 2.905, "v1": -23.672, "v2": 34.252, "v3": -33.500, "v4": 19.317, "amplitude": 35.297, "phase_angle": 13.978, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.827, "filter_rmsd": 0.103, "frame": { "rmsd": 0.006, "origin": [ 143.371, 260.019, 180.753 ], "x_axis": [ -0.946, 0.314, 0.076 ], "y_axis": [ 0.175, 0.300, 0.938 ], "z_axis": [ 0.272, 0.901, -0.339 ], "quaternion": [ 0.061, 0.152, 0.804, 0.572 ] } }, { "index": 401, "index_chain": 401, "chain_name": "A", "nt_resnum": 403, "nt_name": "C", "nt_code": "C", "nt_id": "///A/403", "linked_nts": [ "///A/402", "///A/404" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -69.287, "beta": -179.929, "gamma": 51.219, "delta": 82.791, "epsilon": 178.912, "zeta": -89.263, "epsilon_zeta": -91.825, "bb_type": "BI", "chi": -153.410, "glyco_bond": "anti", "C5prime_xyz": [ -1.241, 8.770, 0.160 ], "P_xyz": [ 1.339, 9.101, 0.496 ], "form": "A", "ssZp": 4.125, "Dp": 4.309, "splay_angle": 19.910, "splay_distance": 3.139, "splay_ratio": 0.173, "d22": 4.195, "d64": 4.133, "eta": 164.435, "theta": -144.610, "eta_prime": 179.737, "theta_prime": -149.843, "eta_base": -141.819, "theta_base": -127.516, "v0": 2.719, "v1": -24.100, "v2": 35.163, "v3": -34.541, "v4": 20.066, "amplitude": 36.304, "phase_angle": 14.401, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.890, "filter_rmsd": 0.064, "frame": { "rmsd": 0.005, "origin": [ 143.649, 262.219, 178.599 ], "x_axis": [ -0.721, 0.358, 0.593 ], "y_axis": [ 0.680, 0.202, 0.705 ], "z_axis": [ 0.133, 0.912, -0.389 ], "quaternion": [ -0.151, 0.341, 0.760, 0.532 ] } }, { "index": 402, "index_chain": 402, "chain_name": "A", "nt_resnum": 404, "nt_name": "C", "nt_code": "C", "nt_id": "///A/404", "linked_nts": [ "///A/403", "///A/405" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": 170.177, "beta": -133.666, "gamma": 150.028, "delta": 84.593, "epsilon": -94.348, "zeta": -133.511, "epsilon_zeta": 39.163, "bb_type": "--", "chi": -175.269, "glyco_bond": "anti", "C5prime_xyz": [ -1.458, 8.574, 1.398 ], "P_xyz": [ 0.888, 9.104, 0.373 ], "form": ".", "ssZp": 4.327, "Dp": 4.535, "splay_angle": 103.391, "splay_distance": 15.983, "splay_ratio": 0.786, "d22": 12.419, "d64": 15.570, "eta": 176.750, "theta": -164.898, "eta_prime": -174.041, "theta_prime": -165.811, "eta_base": -140.096, "theta_base": -167.377, "v0": -0.025, "v1": -20.987, "v2": 32.699, "v3": -33.668, "v4": 21.255, "amplitude": 34.510, "phase_angle": 18.648, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.015, "filter_rmsd": 0.064, "frame": { "rmsd": 0.007, "origin": [ 143.141, 264.726, 176.778 ], "x_axis": [ -0.316, 0.398, 0.861 ], "y_axis": [ 0.948, 0.093, 0.304 ], "z_axis": [ 0.041, 0.912, -0.407 ], "quaternion": [ -0.304, 0.500, 0.674, 0.452 ] } }, { "index": 403, "index_chain": 403, "chain_name": "A", "nt_resnum": 405, "nt_name": "U", "nt_code": "U", "nt_id": "///A/405", "linked_nts": [ "///A/404", "///A/406" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,splayed-apart", "alpha": -49.064, "beta": 129.105, "gamma": 171.103, "delta": 81.222, "epsilon": -162.595, "zeta": -68.534, "epsilon_zeta": -94.061, "bb_type": "BI", "chi": -148.284, "glyco_bond": "anti", "C5prime_xyz": [ -1.332, 8.706, -0.191 ], "P_xyz": [ -1.495, 10.562, -2.026 ], "form": ".", "ssZp": 4.106, "Dp": 4.551, "splay_angle": 16.238, "splay_distance": 3.060, "splay_ratio": 0.158, "d22": null, "d64": null, "eta": -56.449, "theta": -172.136, "eta_prime": -68.893, "theta_prime": -169.502, "eta_base": -83.337, "theta_base": -137.388, "v0": 3.649, "v1": -25.544, "v2": 36.548, "v3": -35.412, "v4": 20.054, "amplitude": 37.532, "phase_angle": 13.147, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.006, "origin": [ 149.979, 272.805, 164.801 ], "x_axis": [ 0.895, 0.435, -0.100 ], "y_axis": [ 0.345, -0.531, 0.774 ], "z_axis": [ 0.284, -0.727, -0.625 ], "quaternion": [ 0.430, 0.873, 0.223, 0.053 ] } }, { "index": 404, "index_chain": 404, "chain_name": "A", "nt_resnum": 406, "nt_name": "G", "nt_code": "G", "nt_id": "///A/406", "linked_nts": [ "///A/405", "///A/407" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 140.314, "beta": -160.266, "gamma": -177.855, "delta": 80.529, "epsilon": -151.139, "zeta": -72.070, "epsilon_zeta": -79.069, "bb_type": "BI", "chi": -167.892, "glyco_bond": "anti", "C5prime_xyz": [ -1.279, 8.601, 0.970 ], "P_xyz": [ -0.043, 10.371, -0.520 ], "form": "A", "ssZp": 4.614, "Dp": 4.676, "splay_angle": 20.385, "splay_distance": 3.236, "splay_ratio": 0.182, "d22": null, "d64": null, "eta": 155.683, "theta": -174.285, "eta_prime": 174.989, "theta_prime": -171.243, "eta_base": -135.616, "theta_base": -146.452, "v0": 5.110, "v1": -27.371, "v2": 38.116, "v3": -36.153, "v4": 19.574, "amplitude": 38.857, "phase_angle": 11.208, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.834, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 151.671, 273.094, 162.267 ], "x_axis": [ 0.895, 0.261, 0.362 ], "y_axis": [ 0.018, -0.832, 0.554 ], "z_axis": [ 0.446, -0.489, -0.750 ], "quaternion": [ 0.280, 0.932, 0.075, 0.217 ] } }, { "index": 405, "index_chain": 405, "chain_name": "A", "nt_resnum": 407, "nt_name": "A", "nt_code": "A", "nt_id": "///A/407", "linked_nts": [ "///A/406", "///A/408" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.763, "beta": 178.292, "gamma": 47.763, "delta": 80.457, "epsilon": -167.064, "zeta": -81.758, "epsilon_zeta": -85.306, "bb_type": "BI", "chi": -162.764, "glyco_bond": "anti", "C5prime_xyz": [ -1.264, 8.675, 0.676 ], "P_xyz": [ 1.277, 9.112, 1.153 ], "form": "A", "ssZp": 4.448, "Dp": 4.513, "splay_angle": 24.257, "splay_distance": 4.007, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 166.457, "theta": -137.168, "eta_prime": 179.000, "theta_prime": -143.473, "eta_base": -144.619, "theta_base": -125.502, "v0": 2.363, "v1": -24.479, "v2": 36.097, "v3": -35.714, "v4": 21.042, "amplitude": 37.383, "phase_angle": 15.070, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.927, "filter_rmsd": 0.038, "frame": { "rmsd": 0.009, "origin": [ 153.385, 273.496, 159.552 ], "x_axis": [ 0.681, -0.146, 0.718 ], "y_axis": [ -0.395, -0.898, 0.191 ], "z_axis": [ 0.617, -0.414, -0.669 ], "quaternion": [ 0.168, 0.901, -0.150, 0.370 ] } }, { "index": 406, "index_chain": 406, "chain_name": "A", "nt_resnum": 408, "nt_name": "G", "nt_code": "G", "nt_id": "///A/408", "linked_nts": [ "///A/407", "///A/409" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 164.269, "beta": -153.497, "gamma": 163.458, "delta": 81.038, "epsilon": -132.012, "zeta": -88.562, "epsilon_zeta": -43.450, "bb_type": "BI", "chi": 174.106, "glyco_bond": "anti", "C5prime_xyz": [ -1.439, 8.197, 2.004 ], "P_xyz": [ 0.594, 9.642, 1.224 ], "form": "A", "ssZp": 4.741, "Dp": 4.752, "splay_angle": 22.751, "splay_distance": 3.482, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 162.334, "theta": -160.776, "eta_prime": 177.195, "theta_prime": -158.188, "eta_base": -145.502, "theta_base": -131.824, "v0": 5.197, "v1": -26.782, "v2": 37.060, "v3": -35.114, "v4": 18.860, "amplitude": 37.743, "phase_angle": 10.915, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.512, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 156.736, 273.970, 157.407 ], "x_axis": [ 0.361, -0.489, 0.794 ], "y_axis": [ -0.661, -0.735, -0.153 ], "z_axis": [ 0.658, -0.470, -0.588 ], "quaternion": [ 0.097, 0.819, -0.351, 0.443 ] } }, { "index": 407, "index_chain": 407, "chain_name": "A", "nt_resnum": 409, "nt_name": "U", "nt_code": "U", "nt_id": "///A/409", "linked_nts": [ "///A/408", "///A/410" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -45.994, "beta": 166.000, "gamma": 42.761, "delta": 82.264, "epsilon": -108.735, "zeta": -66.601, "epsilon_zeta": -42.134, "bb_type": "--", "chi": -164.307, "glyco_bond": "anti", "C5prime_xyz": [ -1.321, 8.613, 0.805 ], "P_xyz": [ 1.249, 8.832, 1.231 ], "form": ".", "ssZp": 4.335, "Dp": 4.758, "splay_angle": 27.461, "splay_distance": 4.678, "splay_ratio": 0.242, "d22": null, "d64": null, "eta": -179.482, "theta": -125.567, "eta_prime": -171.039, "theta_prime": -128.490, "eta_base": -138.849, "theta_base": -116.074, "v0": 3.654, "v1": -25.380, "v2": 36.246, "v3": -35.151, "v4": 19.866, "amplitude": 37.217, "phase_angle": 13.112, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.478, "filter_rmsd": 0.100, "frame": { "rmsd": 0.006, "origin": [ 160.087, 273.813, 156.475 ], "x_axis": [ -0.065, -0.838, 0.542 ], "y_axis": [ -0.698, -0.350, -0.625 ], "z_axis": [ 0.713, -0.419, -0.562 ], "quaternion": [ -0.076, 0.680, -0.565, 0.462 ] } }, { "index": 408, "index_chain": 408, "chain_name": "A", "nt_resnum": 410, "nt_name": "G", "nt_code": "G", "nt_id": "///A/410", "linked_nts": [ "///A/409", "///A/411" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor,cap-acceptor", "alpha": -93.322, "beta": 99.853, "gamma": 143.327, "delta": 83.176, "epsilon": 163.176, "zeta": 29.868, "epsilon_zeta": 133.308, "bb_type": "--", "chi": 178.130, "glyco_bond": "anti", "C5prime_xyz": [ -1.179, 8.323, 1.823 ], "P_xyz": [ -0.275, 10.125, 0.167 ], "form": ".", "ssZp": 3.863, "Dp": 4.115, "splay_angle": 41.826, "splay_distance": 6.461, "splay_ratio": 0.360, "d22": null, "d64": null, "eta": -149.836, "theta": -142.883, "eta_prime": -150.695, "theta_prime": -124.070, "eta_base": -120.543, "theta_base": -58.950, "v0": 3.818, "v1": -23.866, "v2": 33.710, "v3": -32.510, "v4": 18.179, "amplitude": 34.529, "phase_angle": 12.502, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 164.153, 271.592, 155.825 ], "x_axis": [ -0.286, -0.916, 0.280 ], "y_axis": [ -0.634, -0.038, -0.773 ], "z_axis": [ 0.719, -0.398, -0.570 ], "quaternion": [ 0.163, -0.575, 0.674, -0.434 ] } }, { "index": 409, "index_chain": 409, "chain_name": "A", "nt_resnum": 411, "nt_name": "G", "nt_code": "G", "nt_id": "///A/411", "linked_nts": [ "///A/410", "///A/412" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,multiplet,bulge,cap-donor,phosphate", "alpha": -135.171, "beta": 175.322, "gamma": 57.097, "delta": 82.525, "epsilon": -87.457, "zeta": -163.859, "epsilon_zeta": 76.403, "bb_type": "BII", "chi": -156.722, "glyco_bond": "anti", "C5prime_xyz": [ -1.530, 8.798, 0.309 ], "P_xyz": [ 1.017, 9.361, 0.322 ], "form": ".", "ssZp": 3.701, "Dp": 4.598, "splay_angle": 84.157, "splay_distance": 12.145, "splay_ratio": 0.674, "d22": null, "d64": null, "eta": 150.280, "theta": 125.858, "eta_prime": -169.319, "theta_prime": 118.117, "eta_base": -81.096, "theta_base": 108.996, "v0": 0.252, "v1": -22.544, "v2": 34.929, "v3": -35.772, "v4": 22.432, "amplitude": 36.775, "phase_angle": 18.230, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 163.235, 266.165, 152.440 ], "x_axis": [ -0.645, -0.200, -0.737 ], "y_axis": [ 0.185, 0.895, -0.406 ], "z_axis": [ 0.741, -0.398, -0.541 ], "quaternion": [ 0.421, -0.004, 0.878, -0.229 ] } }, { "index": 410, "index_chain": 410, "chain_name": "A", "nt_resnum": 412, "nt_name": "A", "nt_code": "A", "nt_id": "///A/412", "linked_nts": [ "///A/411", "///A/413" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,bulge,A-minor", "alpha": -149.333, "beta": 108.179, "gamma": 55.939, "delta": 81.583, "epsilon": -139.116, "zeta": -61.202, "epsilon_zeta": -77.914, "bb_type": "BI", "chi": 178.030, "glyco_bond": "anti", "C5prime_xyz": [ -1.729, 8.395, 1.748 ], "P_xyz": [ 0.841, 8.043, 1.353 ], "form": ".", "ssZp": 4.610, "Dp": 4.645, "splay_angle": 26.241, "splay_distance": 4.053, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": 106.219, "theta": -110.623, "eta_prime": 112.852, "theta_prime": -121.807, "eta_base": 118.213, "theta_base": -80.136, "v0": 0.767, "v1": -22.784, "v2": 34.799, "v3": -35.334, "v4": 21.810, "amplitude": 36.470, "phase_angle": 17.414, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 170.321, 275.075, 156.672 ], "x_axis": [ -0.896, -0.427, 0.124 ], "y_axis": [ -0.110, -0.058, -0.992 ], "z_axis": [ 0.431, -0.902, 0.005 ], "quaternion": [ -0.113, 0.198, -0.677, 0.700 ] } }, { "index": 411, "index_chain": 411, "chain_name": "A", "nt_resnum": 413, "nt_name": "U", "nt_code": "U", "nt_id": "///A/413", "linked_nts": [ "///A/412", "///A/414" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -83.300, "beta": 174.079, "gamma": 64.775, "delta": 82.661, "epsilon": -142.106, "zeta": -78.768, "epsilon_zeta": -63.338, "bb_type": "BI", "chi": -166.364, "glyco_bond": "anti", "C5prime_xyz": [ -1.263, 8.641, 0.904 ], "P_xyz": [ 1.338, 8.976, 1.025 ], "form": "A", "ssZp": 4.528, "Dp": 4.651, "splay_angle": 24.757, "splay_distance": 3.848, "splay_ratio": 0.214, "d22": 4.376, "d64": 4.224, "eta": 158.902, "theta": -145.022, "eta_prime": -178.582, "theta_prime": -143.434, "eta_base": -104.039, "theta_base": -114.048, "v0": 2.672, "v1": -23.821, "v2": 34.669, "v3": -34.077, "v4": 19.845, "amplitude": 35.796, "phase_angle": 14.417, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.579, "filter_rmsd": 0.105, "frame": { "rmsd": 0.005, "origin": [ 169.192, 271.205, 157.081 ], "x_axis": [ -0.586, -0.305, -0.751 ], "y_axis": [ 0.705, 0.265, -0.657 ], "z_axis": [ 0.400, -0.915, 0.060 ], "quaternion": [ 0.430, 0.150, 0.669, -0.587 ] } }, { "index": 412, "index_chain": 412, "chain_name": "A", "nt_resnum": 414, "nt_name": "C", "nt_code": "C", "nt_id": "///A/414", "linked_nts": [ "///A/413", "///A/415" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -71.364, "beta": 164.891, "gamma": 66.923, "delta": 85.422, "epsilon": -160.443, "zeta": -67.078, "epsilon_zeta": -93.365, "bb_type": "BI", "chi": -166.893, "glyco_bond": "anti", "C5prime_xyz": [ -1.238, 8.685, 0.945 ], "P_xyz": [ 1.381, 8.881, 0.942 ], "form": "A", "ssZp": 4.387, "Dp": 4.434, "splay_angle": 24.098, "splay_distance": 3.817, "splay_ratio": 0.210, "d22": 5.110, "d64": 4.650, "eta": 166.972, "theta": -143.037, "eta_prime": -174.976, "theta_prime": -144.739, "eta_base": -129.630, "theta_base": -132.923, "v0": 0.710, "v1": -20.844, "v2": 31.818, "v3": -32.316, "v4": 19.960, "amplitude": 33.347, "phase_angle": 17.418, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.644, "filter_rmsd": 0.062, "frame": { "rmsd": 0.006, "origin": [ 169.333, 267.360, 157.172 ], "x_axis": [ -0.104, 0.043, -0.994 ], "y_axis": [ 0.924, 0.373, -0.081 ], "z_axis": [ 0.367, -0.927, -0.078 ], "quaternion": [ 0.545, 0.388, 0.624, -0.404 ] } }, { "index": 413, "index_chain": 413, "chain_name": "A", "nt_resnum": 415, "nt_name": "C", "nt_code": "C", "nt_id": "///A/415", "linked_nts": [ "///A/414", "///A/416" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -83.965, "beta": -154.938, "gamma": 48.090, "delta": 85.469, "epsilon": 173.185, "zeta": -81.731, "epsilon_zeta": -105.084, "bb_type": "BI", "chi": -143.619, "glyco_bond": "anti", "C5prime_xyz": [ -1.079, 8.709, -0.404 ], "P_xyz": [ 1.403, 9.167, 0.332 ], "form": "A", "ssZp": 3.808, "Dp": 4.176, "splay_angle": 19.027, "splay_distance": 3.070, "splay_ratio": 0.165, "d22": 4.312, "d64": 4.067, "eta": 166.969, "theta": -143.824, "eta_prime": 177.885, "theta_prime": -145.179, "eta_base": -157.520, "theta_base": -125.901, "v0": 3.173, "v1": -22.826, "v2": 32.724, "v3": -31.808, "v4": 18.113, "amplitude": 33.635, "phase_angle": 13.361, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.429, "filter_rmsd": 0.064, "frame": { "rmsd": 0.006, "origin": [ 169.024, 263.559, 157.321 ], "x_axis": [ 0.305, 0.434, -0.848 ], "y_axis": [ 0.885, 0.199, 0.420 ], "z_axis": [ 0.351, -0.879, -0.323 ], "quaternion": [ 0.543, 0.598, 0.552, -0.208 ] } }, { "index": 414, "index_chain": 414, "chain_name": "A", "nt_resnum": 416, "nt_name": "U", "nt_code": "U", "nt_id": "///A/416", "linked_nts": [ "///A/415", "///A/417" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BII,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,splayed-apart", "alpha": 176.918, "beta": -132.896, "gamma": 142.268, "delta": 82.401, "epsilon": -98.937, "zeta": 129.846, "epsilon_zeta": 131.218, "bb_type": "BII", "chi": -158.200, "glyco_bond": "anti", "C5prime_xyz": [ -1.728, 8.862, 0.371 ], "P_xyz": [ 0.570, 9.237, -0.816 ], "form": ".", "ssZp": 3.730, "Dp": 4.400, "splay_angle": 95.369, "splay_distance": 13.762, "splay_ratio": 0.741, "d22": null, "d64": null, "eta": 176.424, "theta": 80.553, "eta_prime": -172.502, "theta_prime": 94.563, "eta_base": -145.501, "theta_base": 106.362, "v0": -4.844, "v1": -16.966, "v2": 30.975, "v3": -34.655, "v4": 24.920, "amplitude": 34.601, "phase_angle": 26.462, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 169.399, 260.851, 155.924 ], "x_axis": [ 0.630, 0.504, -0.591 ], "y_axis": [ 0.738, -0.152, 0.657 ], "z_axis": [ 0.241, -0.850, -0.468 ], "quaternion": [ 0.503, 0.750, 0.414, -0.117 ] } }, { "index": 415, "index_chain": 415, "chain_name": "A", "nt_resnum": 417, "nt_name": "G", "nt_code": "G", "nt_id": "///A/417", "linked_nts": [ "///A/416", "///A/418" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,phosphate,splayed-apart", "alpha": -103.249, "beta": 171.098, "gamma": 67.737, "delta": 150.837, "epsilon": -82.134, "zeta": -83.000, "epsilon_zeta": 0.866, "bb_type": "--", "chi": -105.061, "glyco_bond": "anti", "C5prime_xyz": [ -1.850, 8.155, -1.874 ], "P_xyz": [ 0.762, 8.424, -1.929 ], "form": ".", "ssZp": 0.114, "Dp": 0.532, "splay_angle": 144.985, "splay_distance": 20.108, "splay_ratio": 0.954, "d22": null, "d64": null, "eta": -142.778, "theta": -0.029, "eta_prime": -128.997, "theta_prime": -34.755, "eta_base": -154.901, "theta_base": -5.659, "v0": -17.338, "v1": 33.542, "v2": -36.031, "v3": 26.973, "v4": -6.267, "amplitude": 36.484, "phase_angle": 170.962, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 168.362, 253.691, 167.631 ], "x_axis": [ -0.611, -0.067, -0.789 ], "y_axis": [ 0.791, -0.095, -0.605 ], "z_axis": [ -0.034, -0.993, 0.111 ], "quaternion": [ -0.318, -0.305, -0.593, 0.674 ] } }, { "index": 416, "index_chain": 416, "chain_name": "A", "nt_resnum": 418, "nt_name": "A", "nt_code": "A", "nt_id": "///A/418", "linked_nts": [ "///A/417", "///A/419" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart", "alpha": 114.297, "beta": 131.030, "gamma": -63.916, "delta": 150.031, "epsilon": -159.664, "zeta": -138.112, "epsilon_zeta": -21.552, "bb_type": "--", "chi": -132.854, "glyco_bond": "anti", "C5prime_xyz": [ -1.725, 8.633, -0.445 ], "P_xyz": [ -1.460, 10.720, 1.108 ], "form": ".", "ssZp": 1.762, "Dp": 1.904, "splay_angle": 39.620, "splay_distance": 6.455, "splay_ratio": 0.339, "d22": null, "d64": null, "eta": 166.692, "theta": 158.214, "eta_prime": -153.305, "theta_prime": 157.738, "eta_base": -165.349, "theta_base": 174.854, "v0": -19.225, "v1": 35.053, "v2": -36.643, "v3": 26.442, "v4": -4.747, "amplitude": 37.403, "phase_angle": 168.429, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 187.159, 253.625, 160.492 ], "x_axis": [ -0.407, 0.574, -0.710 ], "y_axis": [ -0.883, -0.049, 0.466 ], "z_axis": [ 0.233, 0.817, 0.527 ], "quaternion": [ 0.518, -0.169, 0.456, 0.704 ] } }, { "index": 417, "index_chain": 417, "chain_name": "A", "nt_resnum": 419, "nt_name": "G", "nt_code": "G", "nt_id": "///A/419", "linked_nts": [ "///A/418", "///A/420" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-canonical,non-pair-contact,ss-non-loop,phosphate", "alpha": -95.271, "beta": 107.430, "gamma": 173.790, "delta": 142.235, "epsilon": 14.810, "zeta": -64.645, "epsilon_zeta": -280.544, "bb_type": "--", "chi": -87.553, "glyco_bond": "--", "C5prime_xyz": [ -2.746, 7.657, -2.538 ], "P_xyz": [ -3.616, 7.433, -5.001 ], "form": ".", "ssZp": 0.301, "Dp": 1.065, "splay_angle": 64.161, "splay_distance": 9.089, "splay_ratio": 0.531, "d22": null, "d64": null, "eta": -24.585, "theta": -9.351, "eta_prime": -75.808, "theta_prime": 56.045, "eta_base": -100.965, "theta_base": 91.970, "v0": -22.564, "v1": 35.220, "v2": -33.745, "v3": 21.611, "v4": 0.356, "amplitude": 35.771, "phase_angle": 160.622, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 191.927, 250.739, 163.749 ], "x_axis": [ 0.783, 0.381, 0.492 ], "y_axis": [ -0.387, -0.322, 0.864 ], "z_axis": [ 0.487, -0.867, -0.105 ], "quaternion": [ 0.582, 0.743, -0.002, 0.329 ] } }, { "index": 418, "index_chain": 418, "chain_name": "A", "nt_resnum": 420, "nt_name": "U", "nt_code": "U", "nt_id": "///A/420", "linked_nts": [ "///A/419", "///A/421" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate", "alpha": -96.771, "beta": -105.178, "gamma": 80.071, "delta": 82.580, "epsilon": 177.219, "zeta": -80.337, "epsilon_zeta": -102.444, "bb_type": "BI", "chi": -165.560, "glyco_bond": "anti", "C5prime_xyz": [ -1.564, 8.724, 0.831 ], "P_xyz": [ 0.719, 8.121, 1.979 ], "form": ".", "ssZp": 4.150, "Dp": 4.205, "splay_angle": 30.046, "splay_distance": 4.651, "splay_ratio": 0.260, "d22": null, "d64": null, "eta": -177.672, "theta": -123.270, "eta_prime": 157.592, "theta_prime": -128.774, "eta_base": 153.839, "theta_base": -100.842, "v0": -1.392, "v1": -20.056, "v2": 32.598, "v3": -34.314, "v4": 22.511, "amplitude": 34.876, "phase_angle": 20.825, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.007, "origin": [ 184.218, 250.009, 158.989 ], "x_axis": [ 0.943, 0.296, 0.151 ], "y_axis": [ -0.067, -0.275, 0.959 ], "z_axis": [ 0.326, -0.915, -0.240 ], "quaternion": [ 0.597, 0.784, 0.073, 0.152 ] } }, { "index": 419, "index_chain": 419, "chain_name": "A", "nt_resnum": 421, "nt_name": "A", "nt_code": "A", "nt_id": "///A/421", "linked_nts": [ "///A/420", "///A/422" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop", "alpha": 172.363, "beta": -131.334, "gamma": 149.493, "delta": 80.579, "epsilon": -138.495, "zeta": -67.104, "epsilon_zeta": -71.391, "bb_type": "BI", "chi": 170.946, "glyco_bond": "anti", "C5prime_xyz": [ -1.832, 8.255, 2.090 ], "P_xyz": [ 0.620, 8.978, 1.590 ], "form": ".", "ssZp": 4.452, "Dp": 4.586, "splay_angle": 34.814, "splay_distance": 5.433, "splay_ratio": 0.304, "d22": null, "d64": null, "eta": 166.290, "theta": -97.712, "eta_prime": -171.178, "theta_prime": -112.840, "eta_base": -116.302, "theta_base": -57.754, "v0": -0.240, "v1": -22.145, "v2": 34.868, "v3": -36.033, "v4": 22.809, "amplitude": 36.876, "phase_angle": 18.994, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.043, "frame": { "rmsd": 0.010, "origin": [ 186.717, 246.568, 157.106 ], "x_axis": [ 0.725, -0.025, 0.689 ], "y_axis": [ -0.679, -0.199, 0.707 ], "z_axis": [ 0.120, -0.980, -0.161 ], "quaternion": [ 0.584, 0.722, -0.244, 0.280 ] } }, { "index": 420, "index_chain": 420, "chain_name": "A", "nt_resnum": 422, "nt_name": "C", "nt_code": "C", "nt_id": "///A/422", "linked_nts": [ "///A/421", "///A/423" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end", "alpha": 161.740, "beta": -150.089, "gamma": 151.367, "delta": 81.522, "epsilon": -147.814, "zeta": -67.217, "epsilon_zeta": -80.597, "bb_type": "BI", "chi": 178.446, "glyco_bond": "anti", "C5prime_xyz": [ -1.332, 8.378, 1.783 ], "P_xyz": [ 0.957, 9.339, 0.969 ], "form": "A", "ssZp": 4.590, "Dp": 4.622, "splay_angle": 25.189, "splay_distance": 4.038, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 136.283, "theta": -147.182, "eta_prime": 174.957, "theta_prime": -152.406, "eta_base": -89.472, "theta_base": -135.242, "v0": 3.573, "v1": -25.378, "v2": 36.344, "v3": -35.257, "v4": 19.943, "amplitude": 37.331, "phase_angle": 13.206, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.065, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 188.926, 243.079, 160.637 ], "x_axis": [ -0.391, -0.199, 0.899 ], "y_axis": [ -0.907, -0.083, -0.413 ], "z_axis": [ 0.157, -0.976, -0.148 ], "quaternion": [ -0.307, -0.458, 0.603, -0.576 ] } }, { "index": 421, "index_chain": 421, "chain_name": "A", "nt_resnum": 423, "nt_name": "G", "nt_code": "G", "nt_id": "///A/423", "linked_nts": [ "///A/422", "///A/424" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": -63.242, "beta": -175.913, "gamma": 44.709, "delta": 77.896, "epsilon": -98.509, "zeta": -138.560, "epsilon_zeta": 40.051, "bb_type": "--", "chi": -172.726, "glyco_bond": "anti", "C5prime_xyz": [ -1.582, 8.621, 1.235 ], "P_xyz": [ 0.780, 9.188, 2.206 ], "form": "A", "ssZp": 4.468, "Dp": 4.743, "splay_angle": 25.867, "splay_distance": 4.268, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 179.045, "theta": -143.228, "eta_prime": -172.529, "theta_prime": -145.985, "eta_base": -143.897, "theta_base": -131.777, "v0": 1.629, "v1": -25.217, "v2": 37.994, "v3": -38.100, "v4": 22.970, "amplitude": 39.587, "phase_angle": 16.314, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.824, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 191.582, 240.140, 161.425 ], "x_axis": [ -0.800, -0.169, 0.575 ], "y_axis": [ -0.595, 0.108, -0.796 ], "z_axis": [ 0.073, -0.980, -0.187 ], "quaternion": [ -0.174, -0.264, 0.724, -0.613 ] } }, { "index": 422, "index_chain": 422, "chain_name": "A", "nt_resnum": 424, "nt_name": "G", "nt_code": "G", "nt_id": "///A/424", "linked_nts": [ "///A/423", "///A/425" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 81.518, "beta": -97.419, "gamma": -160.260, "delta": 83.466, "epsilon": -142.764, "zeta": -36.791, "epsilon_zeta": -105.973, "bb_type": "BI", "chi": 152.509, "glyco_bond": "anti", "C5prime_xyz": [ -1.978, 7.614, 2.884 ], "P_xyz": [ -0.365, 9.515, 2.085 ], "form": ".", "ssZp": 3.893, "Dp": 4.575, "splay_angle": 25.066, "splay_distance": 4.181, "splay_ratio": 0.234, "d22": null, "d64": null, "eta": 169.689, "theta": -133.306, "eta_prime": 178.445, "theta_prime": -127.178, "eta_base": -154.014, "theta_base": -88.790, "v0": 2.314, "v1": -23.135, "v2": 34.105, "v3": -33.662, "v4": 19.765, "amplitude": 35.296, "phase_angle": 14.925, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.019, "frame": { "rmsd": 0.019, "origin": [ 193.238, 236.264, 162.093 ], "x_axis": [ -0.871, 0.271, 0.410 ], "y_axis": [ -0.331, 0.292, -0.897 ], "z_axis": [ -0.363, -0.917, -0.165 ], "quaternion": [ -0.253, -0.020, 0.763, -0.595 ] } }, { "index": 423, "index_chain": 423, "chain_name": "A", "nt_resnum": 425, "nt_name": "C", "nt_code": "C", "nt_id": "///A/425", "linked_nts": [ "///A/424", "///A/426" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -97.414, "beta": -135.793, "gamma": 47.134, "delta": 144.289, "epsilon": -166.588, "zeta": -92.269, "epsilon_zeta": -74.319, "bb_type": "BI", "chi": -123.360, "glyco_bond": "anti", "C5prime_xyz": [ -1.816, 8.588, -1.041 ], "P_xyz": [ 0.046, 9.720, 0.416 ], "form": ".", "ssZp": 2.554, "Dp": 2.330, "splay_angle": 20.267, "splay_distance": 3.765, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": 151.438, "theta": -123.124, "eta_prime": -169.381, "theta_prime": -139.821, "eta_base": -109.211, "theta_base": -110.236, "v0": -21.920, "v1": 34.607, "v2": -33.266, "v3": 21.436, "v4": 0.106, "amplitude": 35.177, "phase_angle": 161.028, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.066, "filter_rmsd": 0.064, "frame": { "rmsd": 0.011, "origin": [ 190.253, 233.720, 163.542 ], "x_axis": [ -0.733, 0.515, -0.444 ], "y_axis": [ 0.481, -0.068, -0.874 ], "z_axis": [ -0.480, -0.854, -0.198 ], "quaternion": [ -0.013, 0.365, 0.682, -0.633 ] } }, { "index": 424, "index_chain": 424, "chain_name": "A", "nt_resnum": 426, "nt_name": "G", "nt_code": "G", "nt_id": "///A/426", "linked_nts": [ "///A/425", "///A/427" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -68.813, "beta": 175.077, "gamma": 29.424, "delta": 74.519, "epsilon": 168.834, "zeta": -83.855, "epsilon_zeta": -107.312, "bb_type": "BI", "chi": -143.486, "glyco_bond": "anti", "C5prime_xyz": [ -2.734, 8.820, -0.575 ], "P_xyz": [ -0.911, 10.672, -0.583 ], "form": "A", "ssZp": 3.932, "Dp": 4.139, "splay_angle": 21.461, "splay_distance": 3.640, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 145.379, "theta": -166.104, "eta_prime": 159.196, "theta_prime": -172.960, "eta_base": -153.312, "theta_base": -142.454, "v0": -10.659, "v1": -14.980, "v2": 33.210, "v3": -40.355, "v4": 32.202, "amplitude": 39.931, "phase_angle": 33.727, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.018, "frame": { "rmsd": 0.018, "origin": [ 187.383, 231.292, 163.756 ], "x_axis": [ -0.387, 0.472, -0.792 ], "y_axis": [ 0.787, -0.279, -0.551 ], "z_axis": [ -0.481, -0.836, -0.263 ], "quaternion": [ -0.133, -0.537, -0.586, 0.592 ] } }, { "index": 425, "index_chain": 425, "chain_name": "A", "nt_resnum": 427, "nt_name": "G", "nt_code": "G", "nt_id": "///A/427", "linked_nts": [ "///A/426", "///A/428" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": 148.044, "beta": -151.517, "gamma": -179.408, "delta": 84.371, "epsilon": -175.774, "zeta": 24.192, "epsilon_zeta": 160.034, "bb_type": "--", "chi": -179.950, "glyco_bond": "anti", "C5prime_xyz": [ -1.086, 8.308, 1.700 ], "P_xyz": [ 0.715, 9.891, 0.642 ], "form": ".", "ssZp": 4.348, "Dp": 4.411, "splay_angle": 24.316, "splay_distance": 4.496, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": 173.292, "theta": -110.321, "eta_prime": -178.045, "theta_prime": -135.433, "eta_base": -131.708, "theta_base": -118.013, "v0": 5.498, "v1": -25.296, "v2": 34.431, "v3": -32.223, "v4": 16.902, "amplitude": 34.942, "phase_angle": 9.814, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.474, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 184.330, 229.404, 163.158 ], "x_axis": [ 0.052, 0.284, -0.957 ], "y_axis": [ 0.871, -0.482, -0.095 ], "z_axis": [ -0.488, -0.829, -0.272 ], "quaternion": [ 0.273, 0.672, 0.430, -0.538 ] } }, { "index": 426, "index_chain": 426, "chain_name": "A", "nt_resnum": 428, "nt_name": "A", "nt_code": "A", "nt_id": "///A/428", "linked_nts": [ "///A/427", "///A/429" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,phosphate", "alpha": 179.092, "beta": 95.492, "gamma": 161.710, "delta": 84.277, "epsilon": -140.200, "zeta": -110.533, "epsilon_zeta": -29.667, "bb_type": "--", "chi": 171.725, "glyco_bond": "anti", "C5prime_xyz": [ -1.355, 8.016, 2.135 ], "P_xyz": [ -1.136, 10.386, 1.067 ], "form": "A", "ssZp": 4.637, "Dp": 4.697, "splay_angle": 21.562, "splay_distance": 3.352, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 154.092, "theta": 176.066, "eta_prime": 172.574, "theta_prime": -166.763, "eta_base": -144.427, "theta_base": -134.369, "v0": 6.402, "v1": -26.620, "v2": 35.583, "v3": -32.926, "v4": 16.765, "amplitude": 35.992, "phase_angle": 8.654, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.009, "origin": [ 180.623, 228.714, 160.709 ], "x_axis": [ 0.510, 0.072, -0.857 ], "y_axis": [ 0.726, -0.571, 0.384 ], "z_axis": [ -0.461, -0.818, -0.344 ], "quaternion": [ 0.386, 0.779, 0.256, -0.423 ] } }, { "index": 427, "index_chain": 427, "chain_name": "A", "nt_resnum": 429, "nt_name": "A", "nt_code": "A", "nt_id": "///A/429", "linked_nts": [ "///A/428", "///A/430" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": 175.046, "beta": -121.860, "gamma": 152.020, "delta": 80.958, "epsilon": -154.645, "zeta": -78.539, "epsilon_zeta": -76.106, "bb_type": "BI", "chi": -152.384, "glyco_bond": "anti", "C5prime_xyz": [ -1.659, 8.876, 0.067 ], "P_xyz": [ 0.390, 8.957, -1.547 ], "form": ".", "ssZp": 4.061, "Dp": 4.408, "splay_angle": 26.372, "splay_distance": 4.895, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": 158.836, "theta": -119.300, "eta_prime": -176.445, "theta_prime": -139.970, "eta_base": -138.756, "theta_base": -129.274, "v0": -3.515, "v1": -18.724, "v2": 32.565, "v3": -35.500, "v4": 24.624, "amplitude": 35.685, "phase_angle": 24.140, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.043, "frame": { "rmsd": 0.008, "origin": [ 178.607, 227.684, 158.237 ], "x_axis": [ 0.726, -0.400, -0.559 ], "y_axis": [ 0.070, -0.766, 0.640 ], "z_axis": [ -0.684, -0.504, -0.528 ], "quaternion": [ 0.329, 0.869, -0.095, -0.357 ] } }, { "index": 428, "index_chain": 428, "chain_name": "A", "nt_resnum": 430, "nt_name": "C", "nt_code": "C", "nt_id": "///A/430", "linked_nts": [ "///A/429", "///A/431" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,A-minor", "alpha": 111.926, "beta": -141.027, "gamma": -133.258, "delta": 82.747, "epsilon": -115.986, "zeta": 35.074, "epsilon_zeta": 208.940, "bb_type": "--", "chi": -166.210, "glyco_bond": "anti", "C5prime_xyz": [ -1.279, 8.677, 0.903 ], "P_xyz": [ -0.767, 10.934, -0.330 ], "form": ".", "ssZp": 4.427, "Dp": 4.721, "splay_angle": 52.489, "splay_distance": 7.711, "splay_ratio": 0.447, "d22": null, "d64": null, "eta": -169.516, "theta": -38.543, "eta_prime": -158.686, "theta_prime": -77.383, "eta_base": -124.900, "theta_base": -121.380, "v0": 2.559, "v1": -23.933, "v2": 34.988, "v3": -34.472, "v4": 20.157, "amplitude": 36.163, "phase_angle": 14.644, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.005, "origin": [ 177.120, 226.298, 153.784 ], "x_axis": [ 0.443, -0.803, -0.398 ], "y_axis": [ -0.280, -0.546, 0.789 ], "z_axis": [ -0.851, -0.238, -0.467 ], "quaternion": [ 0.328, 0.784, -0.346, -0.399 ] } }, { "index": 429, "index_chain": 429, "chain_name": "A", "nt_resnum": 431, "nt_name": "A", "nt_code": "A", "nt_id": "///A/431", "linked_nts": [ "///A/430", "///A/432" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": 113.384, "beta": 140.453, "gamma": 48.704, "delta": 85.171, "epsilon": -155.337, "zeta": -38.675, "epsilon_zeta": -116.662, "bb_type": "BI", "chi": 165.748, "glyco_bond": "--", "C5prime_xyz": [ -1.562, 7.858, 2.403 ], "P_xyz": [ 0.990, 7.420, 2.862 ], "form": ".", "ssZp": 4.301, "Dp": 4.598, "splay_angle": 28.295, "splay_distance": 4.382, "splay_ratio": 0.254, "d22": null, "d64": null, "eta": -28.539, "theta": -93.976, "eta_prime": 31.136, "theta_prime": -103.276, "eta_base": 79.001, "theta_base": -59.220, "v0": 6.259, "v1": -26.380, "v2": 35.291, "v3": -32.675, "v4": 16.708, "amplitude": 35.708, "phase_angle": 8.764, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.006, "origin": [ 171.724, 221.415, 151.236 ], "x_axis": [ -0.398, 0.899, -0.180 ], "y_axis": [ -0.481, -0.037, 0.876 ], "z_axis": [ 0.781, 0.435, 0.448 ], "quaternion": [ 0.503, 0.219, 0.478, 0.686 ] } }, { "index": 430, "index_chain": 430, "chain_name": "A", "nt_resnum": 432, "nt_name": "C", "nt_code": "C", "nt_id": "///A/432", "linked_nts": [ "///A/431", "///A/433" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -122.314, "beta": -145.049, "gamma": 60.143, "delta": 79.076, "epsilon": -150.337, "zeta": -178.445, "epsilon_zeta": 28.108, "bb_type": "--", "chi": -155.235, "glyco_bond": "anti", "C5prime_xyz": [ -1.296, 8.786, 0.230 ], "P_xyz": [ 1.213, 9.115, 0.911 ], "form": ".", "ssZp": 4.325, "Dp": 4.660, "splay_angle": 114.779, "splay_distance": 15.855, "splay_ratio": 0.843, "d22": null, "d64": null, "eta": 142.983, "theta": 100.117, "eta_prime": 169.453, "theta_prime": 91.603, "eta_base": -111.335, "theta_base": 62.780, "v0": 3.603, "v1": -26.487, "v2": 38.109, "v3": -37.027, "v4": 21.054, "amplitude": 39.179, "phase_angle": 13.423, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 172.823, 225.578, 152.052 ], "x_axis": [ -0.610, 0.348, 0.712 ], "y_axis": [ 0.185, -0.811, 0.555 ], "z_axis": [ 0.770, 0.470, 0.430 ], "quaternion": [ 0.049, 0.439, 0.304, 0.844 ] } }, { "index": 431, "index_chain": 431, "chain_name": "A", "nt_resnum": 433, "nt_name": "G", "nt_code": "G", "nt_id": "///A/433", "linked_nts": [ "///A/432", "///A/434" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -78.274, "beta": 145.716, "gamma": -6.566, "delta": 147.537, "epsilon": -95.395, "zeta": -54.487, "epsilon_zeta": -40.908, "bb_type": "--", "chi": -120.343, "glyco_bond": "anti", "C5prime_xyz": [ -1.861, 8.561, -1.148 ], "P_xyz": [ -0.104, 9.907, 0.262 ], "form": ".", "ssZp": 0.812, "Dp": 0.874, "splay_angle": 135.519, "splay_distance": 17.864, "splay_ratio": 0.926, "d22": null, "d64": null, "eta": 128.929, "theta": -31.478, "eta_prime": 134.978, "theta_prime": -42.189, "eta_base": 138.885, "theta_base": -6.333, "v0": -20.535, "v1": 35.081, "v2": -35.412, "v3": 24.449, "v4": -2.662, "amplitude": 36.604, "phase_angle": 165.343, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 178.468, 211.019, 154.803 ], "x_axis": [ -0.997, 0.045, -0.060 ], "y_axis": [ 0.033, 0.981, 0.189 ], "z_axis": [ 0.068, 0.186, -0.980 ], "quaternion": [ 0.032, 0.020, 0.995, 0.094 ] } }, { "index": 432, "index_chain": 432, "chain_name": "A", "nt_resnum": 434, "nt_name": "U", "nt_code": "U", "nt_id": "///A/434", "linked_nts": [ "///A/433", "///A/435" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-donor,splayed-apart", "alpha": -73.203, "beta": -139.871, "gamma": 70.475, "delta": 146.541, "epsilon": -106.790, "zeta": 95.800, "epsilon_zeta": 157.410, "bb_type": "--", "chi": -142.611, "glyco_bond": "anti", "C5prime_xyz": [ -1.693, 8.683, 0.008 ], "P_xyz": [ 0.206, 8.902, 1.806 ], "form": ".", "ssZp": 1.191, "Dp": 1.170, "splay_angle": 44.169, "splay_distance": 7.174, "splay_ratio": 0.382, "d22": null, "d64": null, "eta": -163.293, "theta": 137.130, "eta_prime": -113.436, "theta_prime": 91.334, "eta_base": -124.497, "theta_base": 52.594, "v0": -19.675, "v1": 33.823, "v2": -34.337, "v3": 23.842, "v4": -2.808, "amplitude": 35.428, "phase_angle": 165.746, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.513, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 183.500, 228.048, 156.763 ], "x_axis": [ -0.653, -0.174, 0.737 ], "y_axis": [ -0.010, -0.971, -0.239 ], "z_axis": [ 0.757, -0.164, 0.632 ], "quaternion": [ -0.045, 0.414, -0.111, 0.902 ] } }, { "index": 433, "index_chain": 433, "chain_name": "A", "nt_resnum": 435, "nt_name": "G", "nt_code": "G", "nt_id": "///A/435", "linked_nts": [ "///A/434", "///A/436" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor", "alpha": 70.268, "beta": -144.801, "gamma": 165.662, "delta": 83.068, "epsilon": -80.584, "zeta": -139.875, "epsilon_zeta": 59.291, "bb_type": "--", "chi": -103.954, "glyco_bond": "anti", "C5prime_xyz": [ -2.055, 7.920, -2.490 ], "P_xyz": [ -1.605, 7.042, -4.909 ], "form": ".", "ssZp": -0.042, "Dp": 4.523, "splay_angle": 53.132, "splay_distance": 8.615, "splay_ratio": 0.458, "d22": null, "d64": null, "eta": 144.970, "theta": -113.321, "eta_prime": 130.007, "theta_prime": -147.386, "eta_base": 111.591, "theta_base": 165.502, "v0": 1.204, "v1": -22.432, "v2": 33.921, "v3": -34.202, "v4": 20.829, "amplitude": 35.421, "phase_angle": 16.737, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6n", "suiteness": 0.559, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 180.026, 222.550, 153.735 ], "x_axis": [ 0.038, 0.974, 0.224 ], "y_axis": [ 0.647, 0.147, -0.749 ], "z_axis": [ -0.762, 0.174, -0.624 ], "quaternion": [ -0.375, 0.616, 0.658, -0.218 ] } }, { "index": 434, "index_chain": 434, "chain_name": "A", "nt_resnum": 436, "nt_name": "A", "nt_code": "A", "nt_id": "///A/436", "linked_nts": [ "///A/435", "///A/437" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": 143.353, "beta": -108.601, "gamma": 63.905, "delta": 81.876, "epsilon": -154.985, "zeta": -119.707, "epsilon_zeta": -35.278, "bb_type": "BI", "chi": -165.047, "glyco_bond": "anti", "C5prime_xyz": [ -1.345, 8.604, 0.839 ], "P_xyz": [ 0.811, 8.035, 2.219 ], "form": ".", "ssZp": 4.548, "Dp": 4.621, "splay_angle": 38.769, "splay_distance": 5.807, "splay_ratio": 0.332, "d22": null, "d64": null, "eta": 48.725, "theta": -134.446, "eta_prime": 79.917, "theta_prime": -131.971, "eta_base": 65.792, "theta_base": -112.085, "v0": 3.795, "v1": -25.563, "v2": 36.384, "v3": -35.236, "v4": 19.787, "amplitude": 37.327, "phase_angle": 12.909, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.004, "origin": [ 178.293, 222.589, 145.296 ], "x_axis": [ 0.070, -0.980, 0.188 ], "y_axis": [ 0.972, 0.024, -0.235 ], "z_axis": [ 0.226, 0.199, 0.954 ], "quaternion": [ 0.715, -0.152, 0.013, -0.682 ] } }, { "index": 435, "index_chain": 435, "chain_name": "A", "nt_resnum": 437, "nt_name": "A", "nt_code": "A", "nt_id": "///A/437", "linked_nts": [ "///A/436", "///A/438" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,hairpin-loop,A-minor", "alpha": 138.887, "beta": -100.140, "gamma": 179.857, "delta": 82.246, "epsilon": -104.415, "zeta": 172.806, "epsilon_zeta": 82.779, "bb_type": "BII", "chi": 121.085, "glyco_bond": "--", "C5prime_xyz": [ -3.337, 6.629, 3.271 ], "P_xyz": [ -1.114, 7.908, 3.798 ], "form": ".", "ssZp": 2.740, "Dp": 4.441, "splay_angle": 54.624, "splay_distance": 7.979, "splay_ratio": 0.460, "d22": null, "d64": null, "eta": -168.403, "theta": 158.099, "eta_prime": -157.072, "theta_prime": 166.585, "eta_base": -118.931, "theta_base": 160.574, "v0": -3.942, "v1": -18.480, "v2": 32.464, "v3": -35.681, "v4": 25.029, "amplitude": 35.763, "phase_angle": 24.802, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.047, "frame": { "rmsd": 0.018, "origin": [ 178.434, 222.931, 151.091 ], "x_axis": [ 0.185, -0.943, -0.278 ], "y_axis": [ 0.543, 0.334, -0.770 ], "z_axis": [ 0.819, -0.008, 0.574 ], "quaternion": [ 0.723, -0.263, 0.379, -0.514 ] } }, { "index": 436, "index_chain": 436, "chain_name": "A", "nt_resnum": 438, "nt_name": "A", "nt_code": "A", "nt_id": "///A/438", "linked_nts": [ "///A/437", "///A/439" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,A-minor", "alpha": 98.912, "beta": -84.311, "gamma": 177.666, "delta": 83.073, "epsilon": -124.481, "zeta": -41.334, "epsilon_zeta": -83.147, "bb_type": "--", "chi": 178.044, "glyco_bond": "anti", "C5prime_xyz": [ -1.296, 8.210, 1.799 ], "P_xyz": [ -0.010, 8.999, -0.347 ], "form": ".", "ssZp": 4.777, "Dp": 4.781, "splay_angle": 41.662, "splay_distance": 6.877, "splay_ratio": 0.367, "d22": null, "d64": null, "eta": -169.928, "theta": -77.565, "eta_prime": -163.667, "theta_prime": -101.330, "eta_base": -176.284, "theta_base": -56.525, "v0": 6.520, "v1": -27.369, "v2": 36.730, "v3": -33.941, "v4": 17.311, "amplitude": 37.161, "phase_angle": 8.732, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 173.346, 228.765, 153.026 ], "x_axis": [ 0.297, -0.562, 0.772 ], "y_axis": [ 0.953, 0.222, -0.205 ], "z_axis": [ -0.056, 0.797, 0.601 ], "quaternion": [ 0.728, -0.344, -0.285, -0.520 ] } }, { "index": 437, "index_chain": 437, "chain_name": "A", "nt_resnum": 439, "nt_name": "U", "nt_code": "U", "nt_id": "///A/439", "linked_nts": [ "///A/438", "///A/440" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": 149.051, "beta": -170.913, "gamma": 166.463, "delta": 80.878, "epsilon": -134.088, "zeta": -124.475, "epsilon_zeta": -9.614, "bb_type": "--", "chi": -171.019, "glyco_bond": "anti", "C5prime_xyz": [ -1.371, 8.587, 1.185 ], "P_xyz": [ 0.244, 10.275, 0.009 ], "form": "A", "ssZp": 4.605, "Dp": 4.695, "splay_angle": 30.000, "splay_distance": 4.547, "splay_ratio": 0.259, "d22": 3.966, "d64": 3.614, "eta": 133.046, "theta": -164.861, "eta_prime": 172.540, "theta_prime": -154.529, "eta_base": -99.334, "theta_base": -115.981, "v0": 2.741, "v1": -24.697, "v2": 36.114, "v3": -35.526, "v4": 20.623, "amplitude": 37.300, "phase_angle": 14.484, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.131, "filter_rmsd": 0.102, "frame": { "rmsd": 0.004, "origin": [ 178.154, 227.085, 157.648 ], "x_axis": [ 0.977, -0.082, -0.196 ], "y_axis": [ -0.036, 0.846, -0.532 ], "z_axis": [ 0.209, 0.527, 0.823 ], "quaternion": [ 0.955, -0.278, 0.106, -0.012 ] } }, { "index": 438, "index_chain": 438, "chain_name": "A", "nt_resnum": 440, "nt_name": "U", "nt_code": "U", "nt_id": "///A/440", "linked_nts": [ "///A/439", "///A/441" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,helix,stem,multiplet", "alpha": 38.374, "beta": 112.429, "gamma": -3.394, "delta": 82.002, "epsilon": -171.510, "zeta": -72.831, "epsilon_zeta": -98.679, "bb_type": "BI", "chi": -162.760, "glyco_bond": "anti", "C5prime_xyz": [ -1.547, 8.704, 0.643 ], "P_xyz": [ 0.646, 8.500, 2.054 ], "form": ".", "ssZp": 4.372, "Dp": 4.422, "splay_angle": 24.117, "splay_distance": 4.332, "splay_ratio": 0.227, "d22": 4.709, "d64": 5.442, "eta": 165.324, "theta": -126.815, "eta_prime": 177.095, "theta_prime": -139.528, "eta_base": -137.462, "theta_base": -131.463, "v0": 0.362, "v1": -22.246, "v2": 34.367, "v3": -35.124, "v4": 21.935, "amplitude": 36.144, "phase_angle": 18.041, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 180.913, 228.798, 160.830 ], "x_axis": [ 0.492, 0.153, -0.857 ], "y_axis": [ -0.740, 0.592, -0.319 ], "z_axis": [ 0.458, 0.791, 0.405 ], "quaternion": [ 0.789, -0.352, 0.417, 0.283 ] } }, { "index": 439, "index_chain": 439, "chain_name": "A", "nt_resnum": 441, "nt_name": "C", "nt_code": "C", "nt_id": "///A/441", "linked_nts": [ "///A/440", "///A/442" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": 143.364, "beta": -175.402, "gamma": -167.643, "delta": 84.141, "epsilon": -125.722, "zeta": -92.474, "epsilon_zeta": -33.248, "bb_type": "--", "chi": 174.810, "glyco_bond": "anti", "C5prime_xyz": [ -1.069, 8.131, 2.018 ], "P_xyz": [ 0.450, 10.248, 1.785 ], "form": "A", "ssZp": 4.740, "Dp": 4.752, "splay_angle": 24.055, "splay_distance": 3.628, "splay_ratio": 0.209, "d22": 4.604, "d64": 4.384, "eta": 167.527, "theta": -177.887, "eta_prime": 172.852, "theta_prime": -165.983, "eta_base": -160.103, "theta_base": -132.831, "v0": 6.774, "v1": -27.067, "v2": 36.018, "v3": -33.094, "v4": 16.601, "amplitude": 36.384, "phase_angle": 8.139, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.642, "filter_rmsd": 0.067, "frame": { "rmsd": 0.009, "origin": [ 184.602, 229.428, 163.012 ], "x_axis": [ 0.078, 0.237, -0.968 ], "y_axis": [ -0.892, 0.450, 0.038 ], "z_axis": [ 0.445, 0.861, 0.246 ], "quaternion": [ 0.666, -0.309, 0.531, 0.424 ] } }, { "index": 440, "index_chain": 440, "chain_name": "A", "nt_resnum": 442, "nt_name": "C", "nt_code": "C", "nt_id": "///A/442", "linked_nts": [ "///A/441", "///A/443" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -47.913, "beta": 162.657, "gamma": 42.535, "delta": 83.238, "epsilon": -154.087, "zeta": -76.366, "epsilon_zeta": -77.721, "bb_type": "BI", "chi": -171.386, "glyco_bond": "anti", "C5prime_xyz": [ -1.170, 8.540, 1.242 ], "P_xyz": [ 1.368, 8.498, 1.885 ], "form": "A", "ssZp": 4.560, "Dp": 4.589, "splay_angle": 23.342, "splay_distance": 3.630, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 165.897, "theta": -148.577, "eta_prime": 179.817, "theta_prime": -149.090, "eta_base": -142.008, "theta_base": -136.271, "v0": 4.120, "v1": -25.007, "v2": 35.214, "v3": -33.844, "v4": 18.751, "amplitude": 36.030, "phase_angle": 12.218, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.392, "filter_rmsd": 0.065, "frame": { "rmsd": 0.008, "origin": [ 187.528, 231.493, 163.594 ], "x_axis": [ -0.499, 0.341, -0.797 ], "y_axis": [ -0.784, 0.214, 0.583 ], "z_axis": [ 0.369, 0.916, 0.160 ], "quaternion": [ 0.468, -0.178, 0.623, 0.601 ] } }, { "index": 441, "index_chain": 441, "chain_name": "A", "nt_resnum": 443, "nt_name": "G", "nt_code": "G", "nt_id": "///A/443", "linked_nts": [ "///A/442", "///A/444" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -59.774, "beta": 176.591, "gamma": 45.499, "delta": 82.274, "epsilon": -169.098, "zeta": -87.190, "epsilon_zeta": -81.908, "bb_type": "BI", "chi": -170.951, "glyco_bond": "anti", "C5prime_xyz": [ -1.328, 8.582, 1.185 ], "P_xyz": [ 1.139, 8.831, 2.031 ], "form": "A", "ssZp": 4.431, "Dp": 4.463, "splay_angle": 23.299, "splay_distance": 3.556, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 166.812, "theta": -134.963, "eta_prime": 178.321, "theta_prime": -135.208, "eta_base": -152.490, "theta_base": -98.055, "v0": 2.819, "v1": -24.339, "v2": 35.412, "v3": -34.797, "v4": 20.145, "amplitude": 36.545, "phase_angle": 14.302, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.853, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 190.520, 233.542, 163.420 ], "x_axis": [ -0.835, 0.283, -0.472 ], "y_axis": [ -0.489, 0.011, 0.872 ], "z_axis": [ 0.252, 0.959, 0.129 ], "quaternion": [ 0.276, -0.079, 0.655, 0.699 ] } }, { "index": 442, "index_chain": 442, "chain_name": "A", "nt_resnum": 444, "nt_name": "U", "nt_code": "U", "nt_id": "///A/444", "linked_nts": [ "///A/443", "///A/445" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": -178.978, "beta": -129.858, "gamma": 137.622, "delta": 81.072, "epsilon": -96.108, "zeta": -147.036, "epsilon_zeta": 50.928, "bb_type": "--", "chi": -179.939, "glyco_bond": "anti", "C5prime_xyz": [ -1.699, 8.512, 1.628 ], "P_xyz": [ 0.849, 8.843, 1.166 ], "form": ".", "ssZp": 4.360, "Dp": 4.515, "splay_angle": 21.202, "splay_distance": 3.425, "splay_ratio": 0.184, "d22": 4.640, "d64": 4.346, "eta": 172.111, "theta": -137.646, "eta_prime": -173.675, "theta_prime": -146.812, "eta_base": -124.319, "theta_base": -136.349, "v0": -1.199, "v1": -21.148, "v2": 34.183, "v3": -35.833, "v4": 23.334, "amplitude": 36.481, "phase_angle": 20.445, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.107, "frame": { "rmsd": 0.009, "origin": [ 190.621, 236.915, 162.300 ], "x_axis": [ -0.972, 0.111, 0.206 ], "y_axis": [ 0.189, -0.150, 0.970 ], "z_axis": [ 0.139, 0.982, 0.125 ], "quaternion": [ -0.026, 0.115, 0.651, 0.750 ] } }, { "index": 443, "index_chain": 443, "chain_name": "A", "nt_resnum": 445, "nt_name": "C", "nt_code": "C", "nt_id": "///A/445", "linked_nts": [ "///A/444", "///A/446" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 101.735, "beta": -103.729, "gamma": 179.680, "delta": 84.537, "epsilon": -149.924, "zeta": -55.363, "epsilon_zeta": -94.561, "bb_type": "BI", "chi": 178.317, "glyco_bond": "anti", "C5prime_xyz": [ -1.410, 8.470, 1.757 ], "P_xyz": [ 0.512, 9.271, 0.181 ], "form": ".", "ssZp": 4.284, "Dp": 4.423, "splay_angle": 23.094, "splay_distance": 4.166, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 151.380, "theta": -117.098, "eta_prime": 172.791, "theta_prime": -142.840, "eta_base": -157.337, "theta_base": -125.002, "v0": -0.872, "v1": -19.548, "v2": 31.349, "v3": -32.754, "v4": 21.209, "amplitude": 33.380, "phase_angle": 20.088, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.070, "frame": { "rmsd": 0.011, "origin": [ 191.363, 240.112, 161.320 ], "x_axis": [ -0.817, -0.107, 0.567 ], "y_axis": [ 0.574, -0.060, 0.817 ], "z_axis": [ -0.053, 0.992, 0.110 ], "quaternion": [ -0.242, 0.182, 0.642, 0.705 ] } }, { "index": 444, "index_chain": 444, "chain_name": "A", "nt_resnum": 446, "nt_name": "G", "nt_code": "G", "nt_id": "///A/446", "linked_nts": [ "///A/445", "///A/447" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end", "alpha": 160.434, "beta": 172.191, "gamma": 163.825, "delta": 79.876, "epsilon": -117.497, "zeta": -71.545, "epsilon_zeta": -45.952, "bb_type": "--", "chi": 178.172, "glyco_bond": "anti", "C5prime_xyz": [ -1.447, 8.322, 1.766 ], "P_xyz": [ -0.058, 10.399, 0.991 ], "form": ".", "ssZp": 4.806, "Dp": 4.815, "splay_angle": 33.852, "splay_distance": 5.012, "splay_ratio": 0.291, "d22": null, "d64": null, "eta": 142.847, "theta": -151.156, "eta_prime": 163.725, "theta_prime": -142.923, "eta_base": -150.496, "theta_base": -81.443, "v0": 5.375, "v1": -27.837, "v2": 38.536, "v3": -36.485, "v4": 19.586, "amplitude": 39.245, "phase_angle": 10.909, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.452, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 188.824, 243.307, 160.481 ], "x_axis": [ -0.376, -0.165, 0.912 ], "y_axis": [ 0.923, 0.015, 0.383 ], "z_axis": [ -0.076, 0.986, 0.147 ], "quaternion": [ -0.443, 0.340, 0.558, 0.614 ] } }, { "index": 445, "index_chain": 445, "chain_name": "A", "nt_resnum": 447, "nt_name": "G", "nt_code": "G", "nt_id": "///A/447", "linked_nts": [ "///A/446", "///A/448" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,ss-non-loop", "alpha": -67.302, "beta": 151.822, "gamma": 66.556, "delta": 81.645, "epsilon": -114.248, "zeta": 175.414, "epsilon_zeta": 70.338, "bb_type": "BII", "chi": 178.361, "glyco_bond": "anti", "C5prime_xyz": [ -1.313, 8.275, 1.755 ], "P_xyz": [ 1.288, 8.479, 1.501 ], "form": ".", "ssZp": 4.799, "Dp": 4.818, "splay_angle": 73.148, "splay_distance": 11.288, "splay_ratio": 0.600, "d22": null, "d64": null, "eta": 161.384, "theta": 160.058, "eta_prime": -173.224, "theta_prime": 155.847, "eta_base": -92.243, "theta_base": 140.803, "v0": 6.678, "v1": -28.452, "v2": 38.310, "v3": -35.481, "v4": 18.192, "amplitude": 38.781, "phase_angle": 8.937, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.352, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 188.253, 245.705, 164.846 ], "x_axis": [ 0.638, -0.087, 0.765 ], "y_axis": [ 0.765, 0.185, -0.617 ], "z_axis": [ -0.088, 0.979, 0.185 ], "quaternion": [ 0.709, -0.563, -0.301, -0.301 ] } }, { "index": 446, "index_chain": 446, "chain_name": "A", "nt_resnum": 448, "nt_name": "A", "nt_code": "A", "nt_id": "///A/448", "linked_nts": [ "///A/447", "///A/449" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate", "alpha": 88.833, "beta": -111.975, "gamma": -158.666, "delta": 85.816, "epsilon": -125.473, "zeta": -97.318, "epsilon_zeta": -28.155, "bb_type": "--", "chi": -176.561, "glyco_bond": "anti", "C5prime_xyz": [ -2.229, 8.632, 1.315 ], "P_xyz": [ -0.988, 10.208, -0.372 ], "form": ".", "ssZp": 4.007, "Dp": 4.183, "splay_angle": 17.305, "splay_distance": 2.787, "splay_ratio": 0.155, "d22": null, "d64": null, "eta": -162.224, "theta": -173.226, "eta_prime": -179.274, "theta_prime": -162.345, "eta_base": 151.929, "theta_base": -102.679, "v0": -8.793, "v1": -11.931, "v2": 26.693, "v3": -32.561, "v4": 26.003, "amplitude": 32.200, "phase_angle": 34.007, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.012, "origin": [ 181.688, 248.722, 156.173 ], "x_axis": [ -0.268, -0.445, 0.854 ], "y_axis": [ 0.858, 0.294, 0.422 ], "z_axis": [ -0.439, 0.846, 0.303 ], "quaternion": [ 0.576, -0.184, -0.561, -0.565 ] } }, { "index": 447, "index_chain": 447, "chain_name": "A", "nt_resnum": 449, "nt_name": "A", "nt_code": "A", "nt_id": "///A/449", "linked_nts": [ "///A/448", "///A/450" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate", "alpha": -23.179, "beta": 161.714, "gamma": 12.205, "delta": 90.707, "epsilon": -153.475, "zeta": -95.392, "epsilon_zeta": -58.083, "bb_type": "BI", "chi": -113.874, "glyco_bond": "anti", "C5prime_xyz": [ -1.137, 7.979, -1.873 ], "P_xyz": [ 1.465, 8.397, -1.641 ], "form": ".", "ssZp": 2.267, "Dp": 4.496, "splay_angle": 13.469, "splay_distance": 2.633, "splay_ratio": 0.144, "d22": null, "d64": null, "eta": 163.154, "theta": -159.462, "eta_prime": 179.158, "theta_prime": -150.904, "eta_base": -115.796, "theta_base": -164.738, "v0": 10.201, "v1": -26.006, "v2": 31.232, "v3": -26.205, "v4": 10.197, "amplitude": 31.233, "phase_angle": 0.116, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.013, "origin": [ 180.864, 250.606, 158.056 ], "x_axis": [ 0.505, -0.021, 0.863 ], "y_axis": [ 0.528, 0.798, -0.290 ], "z_axis": [ -0.683, 0.602, 0.414 ], "quaternion": [ 0.824, -0.270, -0.469, -0.167 ] } }, { "index": 448, "index_chain": 448, "chain_name": "A", "nt_resnum": 450, "nt_name": "U", "nt_code": "U", "nt_id": "///A/450", "linked_nts": [ "///A/449", "///A/451" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,ss-non-loop", "alpha": -43.461, "beta": 148.792, "gamma": 58.074, "delta": 144.828, "epsilon": -114.481, "zeta": 161.107, "epsilon_zeta": 84.412, "bb_type": "BII", "chi": -91.059, "glyco_bond": "anti", "C5prime_xyz": [ -2.403, 7.727, -2.486 ], "P_xyz": [ 0.116, 7.697, -3.214 ], "form": ".", "ssZp": 0.928, "Dp": 1.439, "splay_angle": 64.709, "splay_distance": 10.580, "splay_ratio": 0.537, "d22": 8.128, "d64": 9.170, "eta": -174.601, "theta": 147.247, "eta_prime": -146.187, "theta_prime": 145.420, "eta_base": -162.463, "theta_base": 167.839, "v0": -19.908, "v1": 33.355, "v2": -33.380, "v3": 22.727, "v4": -1.941, "amplitude": 34.649, "phase_angle": 164.446, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.366, "filter_rmsd": 0.105, "frame": { "rmsd": 0.005, "origin": [ 179.465, 252.794, 157.623 ], "x_axis": [ 0.648, -0.016, 0.762 ], "y_axis": [ 0.185, 0.973, -0.137 ], "z_axis": [ -0.739, 0.230, 0.633 ], "quaternion": [ 0.902, -0.102, -0.416, -0.056 ] } }, { "index": 449, "index_chain": 449, "chain_name": "A", "nt_resnum": 451, "nt_name": "C", "nt_code": "C", "nt_id": "///A/451", "linked_nts": [ "///A/450", "///A/452" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,junction-loop,splayed-apart", "alpha": -151.217, "beta": 161.483, "gamma": 116.220, "delta": 149.674, "epsilon": -80.534, "zeta": 112.221, "epsilon_zeta": 167.245, "bb_type": "--", "chi": -152.272, "glyco_bond": "anti", "C5prime_xyz": [ -1.849, 8.696, 0.565 ], "P_xyz": [ 0.690, 9.293, 0.355 ], "form": ".", "ssZp": 0.403, "Dp": 0.407, "splay_angle": 141.976, "splay_distance": 18.016, "splay_ratio": 0.946, "d22": 10.308, "d64": 13.477, "eta": -119.355, "theta": 117.465, "eta_prime": -147.394, "theta_prime": 80.718, "eta_base": -145.675, "theta_base": 58.225, "v0": -21.640, "v1": 36.811, "v2": -37.032, "v3": 25.512, "v4": -2.645, "amplitude": 38.318, "phase_angle": 165.115, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.057, "frame": { "rmsd": 0.008, "origin": [ 170.111, 255.480, 153.473 ], "x_axis": [ 0.391, -0.250, 0.886 ], "y_axis": [ 0.734, 0.665, -0.137 ], "z_axis": [ -0.555, 0.704, 0.443 ], "quaternion": [ 0.790, -0.266, -0.456, -0.311 ] } }, { "index": 450, "index_chain": 450, "chain_name": "A", "nt_resnum": 452, "nt_name": "C", "nt_code": "C", "nt_id": "///A/452", "linked_nts": [ "///A/451", "///A/453" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,junction-loop,splayed-apart", "alpha": 63.510, "beta": 174.058, "gamma": 73.062, "delta": 147.235, "epsilon": -146.363, "zeta": -1.662, "epsilon_zeta": -144.700, "bb_type": "--", "chi": -126.758, "glyco_bond": "anti", "C5prime_xyz": [ -1.744, 8.642, -0.860 ], "P_xyz": [ 0.833, 9.031, -0.526 ], "form": ".", "ssZp": 1.869, "Dp": 1.853, "splay_angle": 139.907, "splay_distance": 17.332, "splay_ratio": 0.940, "d22": null, "d64": null, "eta": 5.482, "theta": -10.194, "eta_prime": 22.376, "theta_prime": -36.500, "eta_base": 28.299, "theta_base": -12.293, "v0": -20.456, "v1": 34.764, "v2": -35.018, "v3": 24.103, "v4": -2.487, "amplitude": 36.232, "phase_angle": 165.123, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.308, "filter_rmsd": 0.062, "frame": { "rmsd": 0.003, "origin": [ 180.501, 265.013, 142.258 ], "x_axis": [ -0.158, 0.904, 0.397 ], "y_axis": [ -0.749, -0.372, 0.549 ], "z_axis": [ 0.644, -0.210, 0.736 ], "quaternion": [ 0.549, 0.346, 0.113, 0.753 ] } }, { "index": 451, "index_chain": 451, "chain_name": "A", "nt_resnum": 453, "nt_name": "G", "nt_code": "G", "nt_id": "///A/453", "linked_nts": [ "///A/452", "///A/454" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -101.822, "beta": -155.330, "gamma": 62.680, "delta": 79.823, "epsilon": -133.745, "zeta": -75.568, "epsilon_zeta": -58.177, "bb_type": "BI", "chi": 175.088, "glyco_bond": "anti", "C5prime_xyz": [ -1.355, 8.239, 1.922 ], "P_xyz": [ 1.021, 8.085, 3.020 ], "form": "A", "ssZp": 4.797, "Dp": 4.777, "splay_angle": 22.775, "splay_distance": 3.720, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 167.173, "theta": -136.895, "eta_prime": -147.163, "theta_prime": -131.274, "eta_base": -125.008, "theta_base": -107.319, "v0": 5.998, "v1": -28.408, "v2": 38.879, "v3": -36.429, "v4": 19.172, "amplitude": 39.484, "phase_angle": 10.044, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 170.889, 253.654, 151.145 ], "x_axis": [ -0.611, 0.103, -0.785 ], "y_axis": [ 0.648, 0.635, -0.421 ], "z_axis": [ 0.455, -0.765, -0.455 ], "quaternion": [ 0.377, 0.228, 0.822, -0.361 ] } }, { "index": 452, "index_chain": 452, "chain_name": "A", "nt_resnum": 454, "nt_name": "G", "nt_code": "G", "nt_id": "///A/454", "linked_nts": [ "///A/453", "///A/455" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor", "alpha": -69.024, "beta": -179.171, "gamma": 57.078, "delta": 82.174, "epsilon": -158.573, "zeta": -73.830, "epsilon_zeta": -84.743, "bb_type": "BI", "chi": -162.529, "glyco_bond": "anti", "C5prime_xyz": [ -1.595, 8.779, 0.663 ], "P_xyz": [ 0.902, 9.378, 1.170 ], "form": "A", "ssZp": 4.346, "Dp": 4.465, "splay_angle": 26.556, "splay_distance": 4.266, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": 167.950, "theta": -153.297, "eta_prime": -177.829, "theta_prime": -152.173, "eta_base": -140.967, "theta_base": -133.674, "v0": -0.619, "v1": -21.425, "v2": 33.989, "v3": -35.334, "v4": 22.672, "amplitude": 36.074, "phase_angle": 19.576, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.851, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 169.842, 250.285, 149.965 ], "x_axis": [ -0.180, 0.577, -0.797 ], "y_axis": [ 0.931, 0.362, 0.051 ], "z_axis": [ 0.318, -0.732, -0.602 ], "quaternion": [ 0.381, 0.515, 0.732, -0.233 ] } }, { "index": 453, "index_chain": 453, "chain_name": "A", "nt_resnum": 455, "nt_name": "G", "nt_code": "G", "nt_id": "///A/455", "linked_nts": [ "///A/454", "///A/456" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor", "alpha": -67.987, "beta": 179.081, "gamma": 56.960, "delta": 81.479, "epsilon": -158.586, "zeta": -70.492, "epsilon_zeta": -88.093, "bb_type": "BI", "chi": -160.703, "glyco_bond": "anti", "C5prime_xyz": [ -1.556, 8.811, 0.567 ], "P_xyz": [ 0.971, 9.392, 0.944 ], "form": "A", "ssZp": 4.352, "Dp": 4.489, "splay_angle": 20.706, "splay_distance": 3.279, "splay_ratio": 0.180, "d22": null, "d64": null, "eta": 172.169, "theta": -150.395, "eta_prime": -177.281, "theta_prime": -150.968, "eta_base": -148.173, "theta_base": -122.468, "v0": -0.072, "v1": -22.231, "v2": 34.804, "v3": -35.802, "v4": 22.599, "amplitude": 36.742, "phase_angle": 18.693, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.908, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 169.322, 246.693, 147.724 ], "x_axis": [ 0.233, 0.725, -0.648 ], "y_axis": [ 0.900, 0.091, 0.425 ], "z_axis": [ 0.367, -0.683, -0.632 ], "quaternion": [ 0.416, 0.666, 0.610, -0.105 ] } }, { "index": 454, "index_chain": 454, "chain_name": "A", "nt_resnum": 456, "nt_name": "A", "nt_code": "A", "nt_id": "///A/456", "linked_nts": [ "///A/455", "///A/457" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -71.924, "beta": 168.624, "gamma": 63.313, "delta": 82.732, "epsilon": -142.035, "zeta": -90.459, "epsilon_zeta": -51.575, "bb_type": "BI", "chi": -167.141, "glyco_bond": "anti", "C5prime_xyz": [ -1.507, 8.662, 0.934 ], "P_xyz": [ 1.074, 9.108, 1.071 ], "form": "A", "ssZp": 4.488, "Dp": 4.598, "splay_angle": 26.026, "splay_distance": 3.983, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 169.315, "theta": -155.627, "eta_prime": -177.560, "theta_prime": -154.055, "eta_base": -134.822, "theta_base": -127.754, "v0": 0.557, "v1": -22.247, "v2": 34.167, "v3": -34.798, "v4": 21.607, "amplitude": 35.869, "phase_angle": 17.721, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.776, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 169.484, 244.952, 144.950 ], "x_axis": [ 0.659, 0.695, -0.289 ], "y_axis": [ 0.651, -0.334, 0.681 ], "z_axis": [ 0.377, -0.637, -0.673 ], "quaternion": [ 0.404, 0.816, 0.412, 0.027 ] } }, { "index": 455, "index_chain": 455, "chain_name": "A", "nt_resnum": 457, "nt_name": "G", "nt_code": "G", "nt_id": "///A/457", "linked_nts": [ "///A/456", "///A/458" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor,kissing-loop,splayed-apart", "alpha": -67.769, "beta": 162.626, "gamma": 62.186, "delta": 84.265, "epsilon": -127.711, "zeta": 66.227, "epsilon_zeta": 166.061, "bb_type": "--", "chi": -165.209, "glyco_bond": "anti", "C5prime_xyz": [ -0.923, 8.589, 0.840 ], "P_xyz": [ 1.685, 8.540, 0.605 ], "form": ".", "ssZp": 4.523, "Dp": 4.767, "splay_angle": 152.686, "splay_distance": 19.489, "splay_ratio": 0.972, "d22": null, "d64": null, "eta": 173.904, "theta": 39.886, "eta_prime": -178.428, "theta_prime": 32.797, "eta_base": -144.160, "theta_base": 8.688, "v0": 5.257, "v1": -25.650, "v2": 35.170, "v3": -33.097, "v4": 17.668, "amplitude": 35.757, "phase_angle": 10.396, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.651, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 170.263, 242.876, 141.642 ], "x_axis": [ 0.895, 0.414, 0.167 ], "y_axis": [ 0.177, -0.673, 0.718 ], "z_axis": [ 0.410, -0.613, -0.676 ], "quaternion": [ 0.369, 0.901, 0.164, 0.160 ] } }, { "index": 456, "index_chain": 456, "chain_name": "A", "nt_resnum": 458, "nt_name": "G", "nt_code": "G", "nt_id": "///A/458", "linked_nts": [ "///A/457", "///A/459" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,hairpin-loop,kissing-loop,splayed-apart", "alpha": 75.849, "beta": 139.256, "gamma": -70.184, "delta": 150.250, "epsilon": -102.261, "zeta": 166.328, "epsilon_zeta": 91.411, "bb_type": "BII", "chi": -141.774, "glyco_bond": "anti", "C5prime_xyz": [ -1.555, 8.695, 0.049 ], "P_xyz": [ -1.291, 10.785, 1.609 ], "form": ".", "ssZp": 0.913, "Dp": 0.943, "splay_angle": 108.186, "splay_distance": 15.862, "splay_ratio": 0.810, "d22": null, "d64": null, "eta": -139.030, "theta": 148.317, "eta_prime": -118.313, "theta_prime": 162.862, "eta_base": -90.274, "theta_base": -169.560, "v0": -18.254, "v1": 34.195, "v2": -36.206, "v3": 26.558, "v4": -5.404, "amplitude": 36.813, "phase_angle": 169.582, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "5r", "suiteness": 0.314, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 173.957, 225.743, 150.166 ], "x_axis": [ -0.884, -0.076, 0.462 ], "y_axis": [ -0.305, 0.842, -0.446 ], "z_axis": [ -0.355, -0.535, -0.767 ], "quaternion": [ -0.219, -0.102, 0.934, -0.262 ] } }, { "index": 457, "index_chain": 457, "chain_name": "A", "nt_resnum": 459, "nt_name": "A", "nt_code": "A", "nt_id": "///A/459", "linked_nts": [ "///A/458", "///A/460" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,kissing-loop,splayed-apart", "alpha": -71.927, "beta": 152.891, "gamma": 112.919, "delta": 80.187, "epsilon": -109.550, "zeta": -41.565, "epsilon_zeta": -67.985, "bb_type": "--", "chi": -152.186, "glyco_bond": "anti", "C5prime_xyz": [ -1.170, 8.632, 0.007 ], "P_xyz": [ 0.358, 9.241, -2.031 ], "form": ".", "ssZp": 3.816, "Dp": 4.838, "splay_angle": 41.986, "splay_distance": 6.689, "splay_ratio": 0.358, "d22": null, "d64": null, "eta": -95.223, "theta": -95.863, "eta_prime": -107.763, "theta_prime": -96.307, "eta_base": -108.152, "theta_base": -51.519, "v0": 6.101, "v1": -28.360, "v2": 38.717, "v3": -36.211, "v4": 18.993, "amplitude": 39.299, "phase_angle": 9.875, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.035, "frame": { "rmsd": 0.009, "origin": [ 185.047, 230.320, 139.789 ], "x_axis": [ -0.311, 0.301, -0.902 ], "y_axis": [ -0.808, 0.415, 0.417 ], "z_axis": [ 0.500, 0.859, 0.114 ], "quaternion": [ 0.552, -0.200, 0.635, 0.502 ] } }, { "index": 458, "index_chain": 458, "chain_name": "A", "nt_resnum": 460, "nt_name": "C", "nt_code": "C", "nt_id": "///A/460", "linked_nts": [ "///A/459", "///A/461" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,kissing-loop", "alpha": -83.483, "beta": -163.907, "gamma": 53.376, "delta": 79.073, "epsilon": -149.587, "zeta": -138.982, "epsilon_zeta": -10.606, "bb_type": "--", "chi": -111.640, "glyco_bond": "anti", "C5prime_xyz": [ -2.092, 8.211, -2.192 ], "P_xyz": [ 0.218, 8.836, -3.236 ], "form": ".", "ssZp": 1.891, "Dp": 4.591, "splay_angle": 45.066, "splay_distance": 7.010, "splay_ratio": 0.409, "d22": 4.023, "d64": 3.163, "eta": 148.127, "theta": -162.765, "eta_prime": -177.237, "theta_prime": -159.858, "eta_base": -112.411, "theta_base": -112.993, "v0": -1.704, "v1": -21.593, "v2": 35.367, "v3": -37.311, "v4": 24.597, "amplitude": 37.911, "phase_angle": 21.108, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.103, "filter_rmsd": 0.064, "frame": { "rmsd": 0.007, "origin": [ 179.768, 232.771, 136.492 ], "x_axis": [ -0.991, 0.007, 0.132 ], "y_axis": [ 0.100, 0.695, 0.712 ], "z_axis": [ -0.087, 0.719, -0.690 ], "quaternion": [ -0.060, 0.029, 0.919, 0.389 ] } }, { "index": 459, "index_chain": 459, "chain_name": "A", "nt_resnum": 461, "nt_name": "C", "nt_code": "C", "nt_id": "///A/461", "linked_nts": [ "///A/460", "///A/462" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-pair-contact,hairpin-loop,kissing-loop", "alpha": 144.611, "beta": -104.332, "gamma": 158.495, "delta": 82.167, "epsilon": -106.944, "zeta": -90.134, "epsilon_zeta": -16.810, "bb_type": "--", "chi": 85.024, "glyco_bond": "syn", "C5prime_xyz": [ -4.708, 5.254, 2.695 ], "P_xyz": [ -2.806, 4.988, 4.469 ], "form": ".", "ssZp": -0.021, "Dp": 4.435, "splay_angle": 33.420, "splay_distance": 6.072, "splay_ratio": 0.319, "d22": null, "d64": null, "eta": 167.091, "theta": -112.738, "eta_prime": 173.740, "theta_prime": -134.249, "eta_base": -138.320, "theta_base": 177.421, "v0": -3.377, "v1": -18.435, "v2": 31.870, "v3": -34.797, "v4": 24.064, "amplitude": 34.904, "phase_angle": 24.065, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.072, "frame": { "rmsd": 0.012, "origin": [ 176.424, 238.864, 137.397 ], "x_axis": [ -0.009, -0.982, -0.186 ], "y_axis": [ 0.997, 0.006, -0.083 ], "z_axis": [ 0.082, -0.186, 0.979 ], "quaternion": [ 0.703, 0.037, 0.096, -0.704 ] } }, { "index": 460, "index_chain": 460, "chain_name": "A", "nt_resnum": 462, "nt_name": "A", "nt_code": "A", "nt_id": "///A/462", "linked_nts": [ "///A/461", "///A/463" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,kissing-loop", "alpha": 69.518, "beta": -112.489, "gamma": -102.458, "delta": 81.256, "epsilon": -96.474, "zeta": -22.610, "epsilon_zeta": -73.864, "bb_type": "--", "chi": 142.373, "glyco_bond": "anti", "C5prime_xyz": [ -2.563, 7.291, 3.083 ], "P_xyz": [ -2.926, 9.807, 3.719 ], "form": ".", "ssZp": 3.922, "Dp": 4.516, "splay_angle": 33.918, "splay_distance": 5.584, "splay_ratio": 0.301, "d22": null, "d64": null, "eta": -169.796, "theta": -115.968, "eta_prime": -164.329, "theta_prime": -123.987, "eta_base": 179.489, "theta_base": -62.375, "v0": -1.072, "v1": -21.018, "v2": 33.825, "v3": -35.446, "v4": 23.060, "amplitude": 36.071, "phase_angle": 20.325, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.046, "frame": { "rmsd": 0.014, "origin": [ 172.851, 240.464, 132.755 ], "x_axis": [ -0.349, -0.699, 0.624 ], "y_axis": [ 0.834, 0.073, 0.547 ], "z_axis": [ -0.428, 0.711, 0.558 ], "quaternion": [ 0.566, -0.072, -0.465, -0.677 ] } }, { "index": 461, "index_chain": 461, "chain_name": "A", "nt_resnum": 463, "nt_name": "U", "nt_code": "U", "nt_id": "///A/463", "linked_nts": [ "///A/462", "///A/464" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop", "alpha": -167.514, "beta": 125.285, "gamma": 138.820, "delta": 77.903, "epsilon": 121.413, "zeta": 59.978, "epsilon_zeta": 61.435, "bb_type": "--", "chi": -173.252, "glyco_bond": "anti", "C5prime_xyz": [ -0.884, 8.300, 1.359 ], "P_xyz": [ 0.233, 9.991, -0.289 ], "form": ".", "ssZp": 3.869, "Dp": 3.896, "splay_angle": 28.208, "splay_distance": 4.436, "splay_ratio": 0.245, "d22": 4.162, "d64": 4.010, "eta": 149.000, "theta": -159.194, "eta_prime": 172.854, "theta_prime": -150.442, "eta_base": -105.477, "theta_base": -103.338, "v0": 9.972, "v1": -30.770, "v2": 38.884, "v3": -34.246, "v4": 15.391, "amplitude": 38.991, "phase_angle": 4.251, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 170.762, 240.910, 137.914 ], "x_axis": [ 0.670, -0.287, 0.685 ], "y_axis": [ 0.645, 0.681, -0.346 ], "z_axis": [ -0.367, 0.674, 0.641 ], "quaternion": [ 0.865, -0.295, -0.304, -0.269 ] } }, { "index": 462, "index_chain": 462, "chain_name": "A", "nt_resnum": 464, "nt_name": "C", "nt_code": "C", "nt_id": "///A/464", "linked_nts": [ "///A/463", "///A/465" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor,kissing-loop,phosphate", "alpha": 175.871, "beta": 154.882, "gamma": 104.134, "delta": 85.658, "epsilon": -156.603, "zeta": -66.076, "epsilon_zeta": -90.527, "bb_type": "BI", "chi": 179.147, "glyco_bond": "anti", "C5prime_xyz": [ -1.274, 8.398, 1.736 ], "P_xyz": [ 1.164, 9.152, 1.161 ], "form": "A", "ssZp": 4.360, "Dp": 4.461, "splay_angle": 19.159, "splay_distance": 2.954, "splay_ratio": 0.167, "d22": 4.754, "d64": 4.309, "eta": 138.097, "theta": -147.548, "eta_prime": 176.505, "theta_prime": -150.695, "eta_base": -112.837, "theta_base": -125.849, "v0": 1.893, "v1": -21.823, "v2": 32.234, "v3": -32.080, "v4": 19.081, "amplitude": 33.445, "phase_angle": 15.464, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.008, "origin": [ 170.476, 242.885, 141.876 ], "x_axis": [ 0.954, 0.282, 0.102 ], "y_axis": [ -0.077, 0.558, -0.826 ], "z_axis": [ -0.290, 0.780, 0.554 ], "quaternion": [ 0.876, -0.459, -0.112, 0.103 ] } }, { "index": 463, "index_chain": 463, "chain_name": "A", "nt_resnum": 465, "nt_name": "U", "nt_code": "U", "nt_id": "///A/465", "linked_nts": [ "///A/464", "///A/466" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -81.375, "beta": -172.299, "gamma": 58.461, "delta": 88.068, "epsilon": -156.283, "zeta": -73.634, "epsilon_zeta": -82.649, "bb_type": "BI", "chi": -152.242, "glyco_bond": "anti", "C5prime_xyz": [ -1.254, 8.657, 0.136 ], "P_xyz": [ 1.331, 8.866, 0.565 ], "form": "A", "ssZp": 4.085, "Dp": 4.440, "splay_angle": 20.802, "splay_distance": 3.338, "splay_ratio": 0.181, "d22": 4.537, "d64": 4.185, "eta": 167.795, "theta": -144.145, "eta_prime": -175.968, "theta_prime": -144.575, "eta_base": -135.511, "theta_base": -121.544, "v0": 3.476, "v1": -22.344, "v2": 31.619, "v3": -30.527, "v4": 17.112, "amplitude": 32.404, "phase_angle": 12.637, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.641, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 169.966, 244.121, 144.510 ], "x_axis": [ 0.672, 0.661, -0.333 ], "y_axis": [ -0.674, 0.360, -0.645 ], "z_axis": [ -0.307, 0.658, 0.687 ], "quaternion": [ 0.824, -0.395, 0.008, 0.405 ] } }, { "index": 464, "index_chain": 464, "chain_name": "A", "nt_resnum": 466, "nt_name": "C", "nt_code": "C", "nt_id": "///A/466", "linked_nts": [ "///A/465", "///A/467" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -64.959, "beta": 173.862, "gamma": 51.565, "delta": 83.478, "epsilon": -175.492, "zeta": -83.103, "epsilon_zeta": -92.389, "bb_type": "BI", "chi": -146.402, "glyco_bond": "anti", "C5prime_xyz": [ -1.307, 8.788, -0.273 ], "P_xyz": [ 1.288, 9.135, -0.313 ], "form": "A", "ssZp": 3.977, "Dp": 4.329, "splay_angle": 25.489, "splay_distance": 4.183, "splay_ratio": 0.222, "d22": 4.276, "d64": 4.703, "eta": 165.401, "theta": -134.333, "eta_prime": -178.320, "theta_prime": -140.585, "eta_base": -140.285, "theta_base": -116.525, "v0": 0.513, "v1": -21.647, "v2": 33.370, "v3": -33.994, "v4": 21.136, "amplitude": 35.047, "phase_angle": 17.798, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.847, "filter_rmsd": 0.062, "frame": { "rmsd": 0.005, "origin": [ 169.763, 246.184, 147.126 ], "x_axis": [ 0.243, 0.719, -0.651 ], "y_axis": [ -0.955, 0.062, -0.289 ], "z_axis": [ -0.167, 0.692, 0.702 ], "quaternion": [ 0.708, -0.346, 0.171, 0.591 ] } }, { "index": 465, "index_chain": 465, "chain_name": "A", "nt_resnum": 467, "nt_name": "C", "nt_code": "C", "nt_id": "///A/467", "linked_nts": [ "///A/466", "///A/468" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,phosphate", "alpha": 160.824, "beta": -139.011, "gamma": 165.109, "delta": 82.120, "epsilon": -135.042, "zeta": -77.391, "epsilon_zeta": -57.651, "bb_type": "BI", "chi": -172.361, "glyco_bond": "anti", "C5prime_xyz": [ -1.407, 8.622, 1.259 ], "P_xyz": [ 0.559, 9.630, -0.136 ], "form": ".", "ssZp": 4.584, "Dp": 4.645, "splay_angle": 31.591, "splay_distance": 5.062, "splay_ratio": 0.274, "d22": 4.644, "d64": 4.848, "eta": 168.894, "theta": -150.295, "eta_prime": -172.177, "theta_prime": -145.232, "eta_base": -128.911, "theta_base": -125.246, "v0": 1.067, "v1": -23.009, "v2": 34.927, "v3": -35.306, "v4": 21.583, "amplitude": 36.518, "phase_angle": 16.974, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.451, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 170.255, 249.800, 149.171 ], "x_axis": [ -0.265, 0.656, -0.707 ], "y_axis": [ -0.954, -0.286, 0.092 ], "z_axis": [ -0.142, 0.699, 0.701 ], "quaternion": [ 0.536, -0.283, 0.264, 0.750 ] } }, { "index": 466, "index_chain": 466, "chain_name": "A", "nt_resnum": 468, "nt_name": "C", "nt_code": "C", "nt_id": "///A/468", "linked_nts": [ "///A/467", "///A/469" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -53.708, "beta": -178.229, "gamma": 61.373, "delta": 146.171, "epsilon": -136.724, "zeta": 93.629, "epsilon_zeta": 129.647, "bb_type": "--", "chi": -140.005, "glyco_bond": "anti", "C5prime_xyz": [ -1.909, 8.797, -0.186 ], "P_xyz": [ 0.301, 9.493, 1.037 ], "form": ".", "ssZp": 1.551, "Dp": 1.702, "splay_angle": 78.367, "splay_distance": 11.742, "splay_ratio": 0.633, "d22": null, "d64": null, "eta": -170.698, "theta": 118.750, "eta_prime": -140.481, "theta_prime": 112.361, "eta_base": -115.281, "theta_base": 136.383, "v0": -23.406, "v1": 37.021, "v2": -35.732, "v3": 23.117, "v4": -0.012, "amplitude": 37.731, "phase_angle": 161.265, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.897, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 170.539, 254.408, 151.250 ], "x_axis": [ -0.596, 0.062, -0.800 ], "y_axis": [ -0.621, -0.667, 0.411 ], "z_axis": [ -0.508, 0.743, 0.436 ], "quaternion": [ 0.208, -0.398, 0.351, 0.822 ] } }, { "index": 467, "index_chain": 467, "chain_name": "A", "nt_resnum": 469, "nt_name": "A", "nt_code": "A", "nt_id": "///A/469", "linked_nts": [ "///A/468", "///A/470" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop", "alpha": 143.242, "beta": -121.973, "gamma": 150.654, "delta": 84.406, "epsilon": -103.238, "zeta": -102.500, "epsilon_zeta": -0.737, "bb_type": "--", "chi": 171.468, "glyco_bond": "anti", "C5prime_xyz": [ -1.893, 8.253, 2.054 ], "P_xyz": [ 0.607, 8.748, 1.483 ], "form": ".", "ssZp": 4.368, "Dp": 4.458, "splay_angle": 19.892, "splay_distance": 3.113, "splay_ratio": 0.174, "d22": null, "d64": null, "eta": -167.326, "theta": -133.655, "eta_prime": -178.829, "theta_prime": -136.256, "eta_base": 173.634, "theta_base": -91.211, "v0": -2.201, "v1": -18.685, "v2": 31.169, "v3": -33.391, "v4": 22.433, "amplitude": 33.688, "phase_angle": 22.299, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 177.568, 248.686, 158.716 ], "x_axis": [ 0.009, 0.819, -0.574 ], "y_axis": [ -0.999, 0.032, 0.031 ], "z_axis": [ 0.044, 0.573, 0.818 ], "quaternion": [ 0.682, -0.199, 0.227, 0.667 ] } }, { "index": 468, "index_chain": 468, "chain_name": "A", "nt_resnum": 470, "nt_name": "A", "nt_code": "A", "nt_id": "///A/470", "linked_nts": [ "///A/469", "///A/471" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": -43.771, "beta": 143.119, "gamma": 38.401, "delta": 80.970, "epsilon": -133.916, "zeta": 67.382, "epsilon_zeta": 158.702, "bb_type": "--", "chi": -150.736, "glyco_bond": "anti", "C5prime_xyz": [ -1.286, 8.723, -0.032 ], "P_xyz": [ 1.321, 8.709, -0.234 ], "form": ".", "ssZp": 4.032, "Dp": 4.713, "splay_angle": 105.002, "splay_distance": 15.828, "splay_ratio": 0.794, "d22": null, "d64": null, "eta": 153.679, "theta": 46.850, "eta_prime": 172.599, "theta_prime": -6.020, "eta_base": -123.281, "theta_base": -41.752, "v0": 2.325, "v1": -24.372, "v2": 35.917, "v3": -35.561, "v4": 20.983, "amplitude": 37.203, "phase_angle": 15.110, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.213, "filter_rmsd": 0.040, "frame": { "rmsd": 0.008, "origin": [ 177.662, 251.309, 160.391 ], "x_axis": [ -0.737, 0.596, -0.319 ], "y_axis": [ -0.644, -0.475, 0.600 ], "z_axis": [ 0.206, 0.648, 0.734 ], "quaternion": [ 0.361, -0.033, 0.363, 0.858 ] } }, { "index": 469, "index_chain": 469, "chain_name": "A", "nt_resnum": 471, "nt_name": "G", "nt_code": "G", "nt_id": "///A/471", "linked_nts": [ "///A/470", "///A/472" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart", "alpha": 73.078, "beta": 105.684, "gamma": 153.533, "delta": 79.866, "epsilon": -152.605, "zeta": -75.079, "epsilon_zeta": -77.527, "bb_type": "BI", "chi": 178.506, "glyco_bond": "anti", "C5prime_xyz": [ -1.477, 8.388, 1.729 ], "P_xyz": [ -1.240, 10.562, 0.273 ], "form": "A", "ssZp": 4.658, "Dp": 4.654, "splay_angle": 23.933, "splay_distance": 3.691, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 42.388, "theta": 158.498, "eta_prime": 80.527, "theta_prime": 174.715, "eta_base": 137.506, "theta_base": -156.929, "v0": 3.495, "v1": -25.950, "v2": 37.338, "v3": -36.295, "v4": 20.677, "amplitude": 38.395, "phase_angle": 13.471, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "5j", "suiteness": 0.235, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 164.707, 251.960, 169.461 ], "x_axis": [ -0.135, 0.138, -0.981 ], "y_axis": [ 0.952, -0.257, -0.168 ], "z_axis": [ -0.276, -0.956, -0.097 ], "quaternion": [ -0.357, -0.552, -0.494, 0.569 ] } }, { "index": 470, "index_chain": 470, "chain_name": "A", "nt_resnum": 472, "nt_name": "G", "nt_code": "G", "nt_id": "///A/472", "linked_nts": [ "///A/471", "///A/473" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.908, "beta": -179.850, "gamma": 60.942, "delta": 84.316, "epsilon": -159.923, "zeta": -73.329, "epsilon_zeta": -86.594, "bb_type": "BI", "chi": -162.148, "glyco_bond": "anti", "C5prime_xyz": [ -1.200, 8.703, 0.669 ], "P_xyz": [ 1.395, 8.930, 0.981 ], "form": "A", "ssZp": 4.378, "Dp": 4.499, "splay_angle": 21.071, "splay_distance": 3.398, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": 177.783, "theta": -150.538, "eta_prime": -170.256, "theta_prime": -151.644, "eta_base": -138.908, "theta_base": -142.606, "v0": 2.612, "v1": -23.299, "v2": 33.937, "v3": -33.367, "v4": 19.451, "amplitude": 35.045, "phase_angle": 14.446, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.871, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 161.636, 249.912, 169.400 ], "x_axis": [ 0.361, -0.124, -0.924 ], "y_axis": [ 0.848, -0.368, 0.381 ], "z_axis": [ -0.387, -0.922, -0.027 ], "quaternion": [ 0.491, 0.663, 0.273, -0.495 ] } }, { "index": 471, "index_chain": 471, "chain_name": "A", "nt_resnum": 473, "nt_name": "C", "nt_code": "C", "nt_id": "///A/473", "linked_nts": [ "///A/472", "///A/474" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -69.815, "beta": 171.516, "gamma": 64.835, "delta": 85.590, "epsilon": -140.476, "zeta": -75.740, "epsilon_zeta": -64.736, "bb_type": "BI", "chi": -157.241, "glyco_bond": "anti", "C5prime_xyz": [ -1.553, 8.862, 0.362 ], "P_xyz": [ 1.019, 9.377, 0.489 ], "form": ".", "ssZp": 4.086, "Dp": 4.394, "splay_angle": 50.777, "splay_distance": 7.381, "splay_ratio": 0.479, "d22": 5.729, "d64": 4.965, "eta": 177.400, "theta": -135.497, "eta_prime": -171.647, "theta_prime": -134.613, "eta_base": -151.971, "theta_base": -67.914, "v0": -3.825, "v1": -16.544, "v2": 29.311, "v3": -32.384, "v4": 22.871, "amplitude": 32.406, "phase_angle": 25.245, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.707, "filter_rmsd": 0.061, "frame": { "rmsd": 0.012, "origin": [ 158.770, 248.099, 169.193 ], "x_axis": [ 0.665, -0.250, -0.704 ], "y_axis": [ 0.592, -0.398, 0.701 ], "z_axis": [ -0.456, -0.882, -0.117 ], "quaternion": [ 0.536, 0.738, 0.116, -0.393 ] } }, { "index": 472, "index_chain": 472, "chain_name": "A", "nt_resnum": 474, "nt_name": "U", "nt_code": "U", "nt_id": "///A/474", "linked_nts": [ "///A/473", "///A/475" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": -52.503, "beta": 167.484, "gamma": 47.395, "delta": 77.809, "epsilon": -144.487, "zeta": -147.617, "epsilon_zeta": 3.130, "bb_type": "--", "chi": 41.513, "glyco_bond": "syn", "C5prime_xyz": [ -5.585, 3.800, 0.679 ], "P_xyz": [ -5.627, 1.221, 1.153 ], "form": ".", "ssZp": -3.642, "Dp": 4.586, "splay_angle": 96.668, "splay_distance": 12.044, "splay_ratio": 0.748, "d22": null, "d64": null, "eta": 168.424, "theta": 136.424, "eta_prime": -174.155, "theta_prime": 150.864, "eta_base": -94.848, "theta_base": 147.917, "v0": -2.310, "v1": -21.367, "v2": 35.530, "v3": -37.861, "v4": 25.276, "amplitude": 38.308, "phase_angle": 21.955, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.785, "filter_rmsd": 0.108, "frame": { "rmsd": 0.012, "origin": [ 160.825, 241.276, 171.120 ], "x_axis": [ 0.206, 0.116, -0.972 ], "y_axis": [ -0.837, 0.535, -0.113 ], "z_axis": [ 0.507, 0.837, 0.207 ], "quaternion": [ 0.698, -0.340, 0.530, 0.342 ] } }, { "index": 473, "index_chain": 473, "chain_name": "A", "nt_resnum": 475, "nt_name": "A", "nt_code": "A", "nt_id": "///A/475", "linked_nts": [ "///A/474", "///A/476" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": -72.204, "beta": 158.831, "gamma": 57.581, "delta": 89.571, "epsilon": -153.735, "zeta": -61.917, "epsilon_zeta": -91.818, "bb_type": "BI", "chi": -172.515, "glyco_bond": "anti", "C5prime_xyz": [ -1.093, 8.369, 1.360 ], "P_xyz": [ 1.494, 8.105, 1.681 ], "form": ".", "ssZp": 4.385, "Dp": 4.474, "splay_angle": 21.273, "splay_distance": 3.249, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": 178.504, "theta": -127.443, "eta_prime": 167.402, "theta_prime": -129.583, "eta_base": 146.311, "theta_base": -91.171, "v0": 5.446, "v1": -23.242, "v2": 31.109, "v3": -28.896, "v4": 14.888, "amplitude": 31.493, "phase_angle": 8.960, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.632, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 149.042, 240.781, 168.677 ], "x_axis": [ 0.860, 0.246, -0.448 ], "y_axis": [ 0.453, 0.039, 0.891 ], "z_axis": [ 0.236, -0.969, -0.078 ], "quaternion": [ 0.675, 0.689, 0.253, -0.077 ] } }, { "index": 474, "index_chain": 474, "chain_name": "A", "nt_resnum": 476, "nt_name": "A", "nt_code": "A", "nt_id": "///A/476", "linked_nts": [ "///A/475", "///A/477" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,ribose-zipper", "alpha": -78.343, "beta": -174.015, "gamma": 54.176, "delta": 92.202, "epsilon": -125.268, "zeta": -100.459, "epsilon_zeta": -24.809, "bb_type": "--", "chi": -150.702, "glyco_bond": "anti", "C5prime_xyz": [ -0.991, 8.564, 0.145 ], "P_xyz": [ 1.563, 8.556, 0.765 ], "form": ".", "ssZp": 3.825, "Dp": 4.521, "splay_angle": 18.481, "splay_distance": 3.078, "splay_ratio": 0.164, "d22": null, "d64": null, "eta": 173.721, "theta": -140.613, "eta_prime": -169.377, "theta_prime": -137.537, "eta_base": -115.020, "theta_base": -121.970, "v0": 5.290, "v1": -21.748, "v2": 29.002, "v3": -26.834, "v4": 13.678, "amplitude": 29.331, "phase_angle": 8.584, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.517, "filter_rmsd": 0.041, "frame": { "rmsd": 0.013, "origin": [ 150.611, 238.138, 167.624 ], "x_axis": [ 0.909, 0.228, 0.350 ], "y_axis": [ -0.299, -0.227, 0.927 ], "z_axis": [ 0.291, -0.947, -0.138 ], "quaternion": [ 0.621, 0.754, -0.024, 0.212 ] } }, { "index": 475, "index_chain": 475, "chain_name": "A", "nt_resnum": 477, "nt_name": "A", "nt_code": "A", "nt_id": "///A/477", "linked_nts": [ "///A/476", "///A/478" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper", "alpha": -49.114, "beta": 141.261, "gamma": 52.930, "delta": 85.048, "epsilon": -103.724, "zeta": -96.760, "epsilon_zeta": -6.964, "bb_type": "--", "chi": -140.513, "glyco_bond": "anti", "C5prime_xyz": [ -1.754, 8.760, -0.642 ], "P_xyz": [ 0.775, 8.888, -1.302 ], "form": ".", "ssZp": 2.967, "Dp": 4.422, "splay_angle": 67.838, "splay_distance": 9.644, "splay_ratio": 0.598, "d22": null, "d64": null, "eta": 176.108, "theta": -80.576, "eta_prime": -171.815, "theta_prime": -88.936, "eta_base": -149.668, "theta_base": -31.703, "v0": -3.780, "v1": -17.037, "v2": 30.045, "v3": -33.071, "v4": 23.302, "amplitude": 33.151, "phase_angle": 24.998, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.702, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 151.413, 235.227, 167.027 ], "x_axis": [ 0.691, 0.200, 0.694 ], "y_axis": [ -0.532, -0.510, 0.676 ], "z_axis": [ 0.489, -0.837, -0.246 ], "quaternion": [ 0.484, 0.782, -0.106, 0.378 ] } }, { "index": 476, "index_chain": 476, "chain_name": "A", "nt_resnum": 478, "nt_name": "U", "nt_code": "U", "nt_id": "///A/478", "linked_nts": [ "///A/477", "///A/479" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-stack,non-canonical,junction-loop", "alpha": 173.565, "beta": -144.862, "gamma": 162.780, "delta": 84.290, "epsilon": -123.545, "zeta": -77.192, "epsilon_zeta": -46.354, "bb_type": "--", "chi": -19.340, "glyco_bond": "syn", "C5prime_xyz": [ -4.549, 4.143, -2.536 ], "P_xyz": [ -5.346, 1.692, -2.052 ], "form": ".", "ssZp": -4.611, "Dp": 4.761, "splay_angle": 49.018, "splay_distance": 7.657, "splay_ratio": 0.416, "d22": null, "d64": null, "eta": 155.409, "theta": -140.884, "eta_prime": -171.629, "theta_prime": -142.074, "eta_base": -116.619, "theta_base": -164.647, "v0": 5.932, "v1": -26.410, "v2": 35.765, "v3": -33.372, "v4": 17.372, "amplitude": 36.262, "phase_angle": 9.491, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.008, "origin": [ 148.859, 230.473, 175.020 ], "x_axis": [ 0.526, 0.070, 0.848 ], "y_axis": [ 0.652, -0.674, -0.349 ], "z_axis": [ 0.547, 0.736, -0.400 ], "quaternion": [ -0.336, 0.806, 0.224, 0.432 ] } }, { "index": 477, "index_chain": 477, "chain_name": "A", "nt_resnum": 479, "nt_name": "A", "nt_code": "A", "nt_id": "///A/479", "linked_nts": [ "///A/478", "///A/480" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop,A-minor,ribose-zipper", "alpha": -50.355, "beta": 179.861, "gamma": 35.565, "delta": 79.652, "epsilon": -145.224, "zeta": -71.822, "epsilon_zeta": -73.402, "bb_type": "BI", "chi": -162.565, "glyco_bond": "anti", "C5prime_xyz": [ -1.494, 8.691, 0.666 ], "P_xyz": [ 0.890, 9.362, 1.498 ], "form": "A", "ssZp": 4.473, "Dp": 4.657, "splay_angle": 26.534, "splay_distance": 4.345, "splay_ratio": 0.234, "d22": null, "d64": null, "eta": 164.753, "theta": -145.705, "eta_prime": 179.710, "theta_prime": -139.503, "eta_base": 171.724, "theta_base": -111.328, "v0": 1.494, "v1": -24.274, "v2": 36.611, "v3": -36.757, "v4": 22.248, "amplitude": 38.171, "phase_angle": 16.435, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.327, "filter_rmsd": 0.040, "frame": { "rmsd": 0.011, "origin": [ 152.695, 226.230, 180.110 ], "x_axis": [ -0.841, 0.538, -0.059 ], "y_axis": [ -0.173, -0.370, -0.913 ], "z_axis": [ -0.513, -0.757, 0.404 ], "quaternion": [ 0.220, -0.177, -0.516, 0.809 ] } }, { "index": 478, "index_chain": 478, "chain_name": "A", "nt_resnum": 480, "nt_name": "C", "nt_code": "C", "nt_id": "///A/480", "linked_nts": [ "///A/479", "///A/481" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,ribose-zipper", "alpha": -56.466, "beta": 165.119, "gamma": 64.910, "delta": 79.547, "epsilon": -152.520, "zeta": -79.537, "epsilon_zeta": -72.983, "bb_type": "BI", "chi": -160.539, "glyco_bond": "anti", "C5prime_xyz": [ -1.760, 8.905, 0.483 ], "P_xyz": [ 0.724, 9.688, 0.371 ], "form": ".", "ssZp": 4.284, "Dp": 4.443, "splay_angle": 20.972, "splay_distance": 3.585, "splay_ratio": 0.187, "d22": 4.338, "d64": 4.166, "eta": 178.808, "theta": -134.944, "eta_prime": -163.655, "theta_prime": -138.299, "eta_base": -125.080, "theta_base": -135.914, "v0": -5.407, "v1": -17.800, "v2": 32.820, "v3": -36.892, "v4": 26.678, "amplitude": 36.792, "phase_angle": 26.869, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.731, "filter_rmsd": 0.058, "frame": { "rmsd": 0.009, "origin": [ 149.641, 224.896, 182.897 ], "x_axis": [ -0.797, 0.274, -0.538 ], "y_axis": [ 0.274, -0.630, -0.727 ], "z_axis": [ -0.538, -0.727, 0.427 ], "quaternion": [ 0.000, -0.318, -0.430, 0.845 ] } }, { "index": 479, "index_chain": 479, "chain_name": "A", "nt_resnum": 481, "nt_name": "U", "nt_code": "U", "nt_id": "///A/481", "linked_nts": [ "///A/480", "///A/482" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BII,non-stack,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge", "alpha": -179.369, "beta": -177.988, "gamma": 162.661, "delta": 147.242, "epsilon": -95.753, "zeta": 175.194, "epsilon_zeta": 89.053, "bb_type": "BII", "chi": -146.985, "glyco_bond": "anti", "C5prime_xyz": [ -2.000, 8.687, 0.243 ], "P_xyz": [ 0.112, 9.990, -0.557 ], "form": ".", "ssZp": 0.756, "Dp": 0.812, "splay_angle": 15.380, "splay_distance": 3.974, "splay_ratio": 0.241, "d22": 9.105, "d64": 7.480, "eta": -151.004, "theta": 124.566, "eta_prime": -148.080, "theta_prime": 135.212, "eta_base": -143.673, "theta_base": 116.837, "v0": -22.535, "v1": 36.623, "v2": -35.970, "v3": 23.887, "v4": -1.065, "amplitude": 37.648, "phase_angle": 162.830, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.556, "filter_rmsd": 0.100, "frame": { "rmsd": 0.009, "origin": [ 147.257, 223.924, 185.392 ], "x_axis": [ -0.159, 0.382, -0.910 ], "y_axis": [ 0.433, -0.802, -0.412 ], "z_axis": [ -0.887, -0.460, -0.038 ], "quaternion": [ -0.018, -0.648, -0.314, 0.693 ] } }, { "index": 480, "index_chain": 480, "chain_name": "A", "nt_resnum": 482, "nt_name": "C", "nt_code": "C", "nt_id": "///A/482", "linked_nts": [ "///A/481", "///A/483" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,bulge", "alpha": -90.732, "beta": 168.297, "gamma": 7.044, "delta": 80.113, "epsilon": -146.898, "zeta": -56.753, "epsilon_zeta": -90.145, "bb_type": "BI", "chi": -0.861, "glyco_bond": "syn", "C5prime_xyz": [ -5.185, 4.048, -1.685 ], "P_xyz": [ -5.188, 2.123, -3.454 ], "form": ".", "ssZp": -4.654, "Dp": 4.647, "splay_angle": 32.410, "splay_distance": 5.447, "splay_ratio": 0.290, "d22": 3.942, "d64": 5.879, "eta": 152.029, "theta": -106.543, "eta_prime": 137.391, "theta_prime": -106.121, "eta_base": 123.096, "theta_base": -116.572, "v0": 1.547, "v1": -24.232, "v2": 36.495, "v3": -36.607, "v4": 22.146, "amplitude": 38.035, "phase_angle": 16.361, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.007, "origin": [ 149.689, 221.505, 187.399 ], "x_axis": [ -0.600, 0.721, 0.346 ], "y_axis": [ 0.304, -0.194, 0.933 ], "z_axis": [ 0.740, 0.665, -0.103 ], "quaternion": [ 0.160, 0.417, 0.614, 0.650 ] } }, { "index": 481, "index_chain": 481, "chain_name": "A", "nt_resnum": 483, "nt_name": "C", "nt_code": "C", "nt_id": "///A/483", "linked_nts": [ "///A/482", "///A/484" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": 149.235, "beta": -160.557, "gamma": -177.672, "delta": 81.953, "epsilon": -148.109, "zeta": -59.889, "epsilon_zeta": -88.220, "bb_type": "BI", "chi": 167.891, "glyco_bond": "anti", "C5prime_xyz": [ -1.441, 8.087, 2.313 ], "P_xyz": [ 0.359, 9.957, 2.000 ], "form": "A", "ssZp": 4.420, "Dp": 4.618, "splay_angle": 26.287, "splay_distance": 4.142, "splay_ratio": 0.235, "d22": 4.907, "d64": 4.984, "eta": 162.015, "theta": -160.384, "eta_prime": -167.500, "theta_prime": -154.791, "eta_base": -156.729, "theta_base": -127.618, "v0": 3.980, "v1": -25.486, "v2": 36.137, "v3": -34.797, "v4": 19.434, "amplitude": 37.022, "phase_angle": 12.554, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.767, "filter_rmsd": 0.067, "frame": { "rmsd": 0.008, "origin": [ 144.376, 222.016, 188.486 ], "x_axis": [ 0.247, -0.392, -0.886 ], "y_axis": [ 0.703, -0.557, 0.442 ], "z_axis": [ -0.667, -0.732, 0.138 ], "quaternion": [ 0.455, 0.646, 0.120, -0.602 ] } }, { "index": 482, "index_chain": 482, "chain_name": "A", "nt_resnum": 484, "nt_name": "C", "nt_code": "C", "nt_id": "///A/484", "linked_nts": [ "///A/483", "///A/485" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -77.732, "beta": -153.979, "gamma": 42.610, "delta": 82.802, "epsilon": -175.918, "zeta": -78.150, "epsilon_zeta": -97.769, "bb_type": "BI", "chi": -163.996, "glyco_bond": "anti", "C5prime_xyz": [ -1.263, 8.682, 0.795 ], "P_xyz": [ 0.931, 9.045, 2.177 ], "form": "A", "ssZp": 4.328, "Dp": 4.374, "splay_angle": 22.353, "splay_distance": 3.573, "splay_ratio": 0.197, "d22": 4.550, "d64": 4.573, "eta": 164.986, "theta": -146.486, "eta_prime": 179.179, "theta_prime": -146.900, "eta_base": -142.837, "theta_base": -128.746, "v0": 2.741, "v1": -23.948, "v2": 34.880, "v3": -34.286, "v4": 19.900, "amplitude": 36.006, "phase_angle": 14.367, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.525, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 140.530, 220.849, 187.483 ], "x_axis": [ 0.684, -0.571, -0.455 ], "y_axis": [ 0.473, -0.128, 0.872 ], "z_axis": [ -0.556, -0.811, 0.182 ], "quaternion": [ 0.659, 0.638, -0.038, -0.396 ] } }, { "index": 483, "index_chain": 483, "chain_name": "A", "nt_resnum": 485, "nt_name": "U", "nt_code": "U", "nt_id": "///A/485", "linked_nts": [ "///A/484", "///A/486" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -170.199, "beta": -151.637, "gamma": 134.918, "delta": 78.785, "epsilon": -133.048, "zeta": -80.595, "epsilon_zeta": -52.453, "bb_type": "BI", "chi": -177.852, "glyco_bond": "anti", "C5prime_xyz": [ -1.541, 8.504, 1.562 ], "P_xyz": [ 0.876, 9.302, 0.977 ], "form": "A", "ssZp": 4.652, "Dp": 4.680, "splay_angle": 22.358, "splay_distance": 3.567, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 160.329, "theta": -144.674, "eta_prime": 172.982, "theta_prime": -146.900, "eta_base": -156.629, "theta_base": -119.136, "v0": 0.779, "v1": -23.617, "v2": 36.297, "v3": -36.851, "v4": 22.686, "amplitude": 38.051, "phase_angle": 17.462, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 137.787, 218.840, 186.385 ], "x_axis": [ 0.870, -0.492, -0.023 ], "y_axis": [ 0.084, 0.102, 0.991 ], "z_axis": [ -0.486, -0.864, 0.130 ], "quaternion": [ 0.725, 0.640, -0.160, -0.199 ] } }, { "index": 484, "index_chain": 484, "chain_name": "A", "nt_resnum": 486, "nt_name": "A", "nt_code": "A", "nt_id": "///A/486", "linked_nts": [ "///A/485", "///A/487" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -52.893, "beta": 161.901, "gamma": 48.667, "delta": 77.684, "epsilon": -117.711, "zeta": -61.089, "epsilon_zeta": -56.621, "bb_type": "--", "chi": -170.306, "glyco_bond": "anti", "C5prime_xyz": [ -1.703, 8.645, 1.091 ], "P_xyz": [ 0.808, 9.227, 1.467 ], "form": ".", "ssZp": 4.530, "Dp": 4.727, "splay_angle": 23.780, "splay_distance": 4.162, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 169.936, "theta": -129.232, "eta_prime": -177.603, "theta_prime": -132.731, "eta_base": -134.522, "theta_base": -113.754, "v0": -0.179, "v1": -23.692, "v2": 37.267, "v3": -38.417, "v4": 24.313, "amplitude": 39.385, "phase_angle": 18.876, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.721, "filter_rmsd": 0.040, "frame": { "rmsd": 0.008, "origin": [ 137.187, 215.533, 185.188 ], "x_axis": [ 0.792, -0.282, 0.542 ], "y_axis": [ -0.444, 0.343, 0.828 ], "z_axis": [ -0.419, -0.896, 0.146 ], "quaternion": [ 0.755, 0.571, -0.318, 0.054 ] } }, { "index": 485, "index_chain": 485, "chain_name": "A", "nt_resnum": 487, "nt_name": "G", "nt_code": "G", "nt_id": "///A/487", "linked_nts": [ "///A/486", "///A/488" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -97.242, "beta": 110.605, "gamma": 138.794, "delta": 81.145, "epsilon": -137.640, "zeta": -72.655, "epsilon_zeta": -64.985, "bb_type": "BI", "chi": 171.412, "glyco_bond": "anti", "C5prime_xyz": [ -1.603, 8.295, 2.094 ], "P_xyz": [ -0.439, 10.229, 0.768 ], "form": "A", "ssZp": 4.534, "Dp": 4.620, "splay_angle": 25.903, "splay_distance": 4.200, "splay_ratio": 0.231, "d22": null, "d64": null, "eta": -176.769, "theta": -174.545, "eta_prime": -165.020, "theta_prime": -166.968, "eta_base": -127.081, "theta_base": -143.629, "v0": 0.030, "v1": -22.045, "v2": 34.452, "v3": -35.381, "v4": 22.319, "amplitude": 36.344, "phase_angle": 18.572, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 137.967, 211.453, 184.935 ], "x_axis": [ 0.546, -0.112, 0.830 ], "y_axis": [ -0.746, 0.386, 0.543 ], "z_axis": [ -0.381, -0.916, 0.127 ], "quaternion": [ 0.718, 0.508, -0.422, 0.221 ] } }, { "index": 486, "index_chain": 486, "chain_name": "A", "nt_resnum": 488, "nt_name": "U", "nt_code": "U", "nt_id": "///A/488", "linked_nts": [ "///A/487", "///A/489" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -55.741, "beta": -172.750, "gamma": 34.842, "delta": 80.426, "epsilon": 175.212, "zeta": -86.142, "epsilon_zeta": -98.646, "bb_type": "BI", "chi": -160.255, "glyco_bond": "anti", "C5prime_xyz": [ -1.491, 8.717, 0.537 ], "P_xyz": [ 0.806, 9.454, 1.534 ], "form": "A", "ssZp": 4.247, "Dp": 4.301, "splay_angle": 16.742, "splay_distance": 2.639, "splay_ratio": 0.148, "d22": null, "d64": null, "eta": 165.370, "theta": -155.122, "eta_prime": -179.414, "theta_prime": -147.366, "eta_base": -144.563, "theta_base": -120.697, "v0": 1.025, "v1": -23.513, "v2": 35.833, "v3": -36.259, "v4": 22.221, "amplitude": 37.492, "phase_angle": 17.107, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.414, "filter_rmsd": 0.097, "frame": { "rmsd": 0.010, "origin": [ 138.695, 207.395, 184.134 ], "x_axis": [ 0.076, 0.134, 0.988 ], "y_axis": [ -0.909, 0.416, 0.013 ], "z_axis": [ -0.410, -0.899, 0.154 ], "quaternion": [ 0.641, 0.356, -0.545, 0.407 ] } }, { "index": 487, "index_chain": 487, "chain_name": "A", "nt_resnum": 489, "nt_name": "G", "nt_code": "G", "nt_id": "///A/489", "linked_nts": [ "///A/488", "///A/490" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart", "alpha": 176.048, "beta": -138.981, "gamma": 163.363, "delta": 144.959, "epsilon": -82.938, "zeta": -102.270, "epsilon_zeta": 19.332, "bb_type": "--", "chi": -151.960, "glyco_bond": "anti", "C5prime_xyz": [ -1.760, 8.756, 0.538 ], "P_xyz": [ 0.777, 9.122, 0.074 ], "form": ".", "ssZp": 0.517, "Dp": 0.579, "splay_angle": 155.441, "splay_distance": 18.983, "splay_ratio": 0.977, "d22": null, "d64": null, "eta": -129.760, "theta": -78.142, "eta_prime": -128.391, "theta_prime": -101.517, "eta_base": -106.946, "theta_base": -158.446, "v0": -21.942, "v1": 35.408, "v2": -34.687, "v3": 22.905, "v4": -0.831, "amplitude": 36.366, "phase_angle": 162.522, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.346, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 138.986, 204.895, 184.928 ], "x_axis": [ -0.377, 0.465, 0.801 ], "y_axis": [ -0.884, 0.076, -0.461 ], "z_axis": [ -0.275, -0.882, 0.383 ], "quaternion": [ 0.520, 0.203, -0.517, 0.649 ] } }, { "index": 488, "index_chain": 488, "chain_name": "A", "nt_resnum": 490, "nt_name": "A", "nt_code": "A", "nt_id": "///A/490", "linked_nts": [ "///A/489", "///A/491" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,bulge,A-minor,phosphate,splayed-apart", "alpha": 58.733, "beta": 159.785, "gamma": 40.862, "delta": 82.844, "epsilon": -108.156, "zeta": 99.043, "epsilon_zeta": 152.801, "bb_type": "--", "chi": -174.600, "glyco_bond": "anti", "C5prime_xyz": [ -1.674, 8.608, 1.340 ], "P_xyz": [ 0.743, 8.951, 2.302 ], "form": ".", "ssZp": 4.391, "Dp": 4.529, "splay_angle": 155.808, "splay_distance": 20.268, "splay_ratio": 0.978, "d22": null, "d64": null, "eta": -107.647, "theta": 91.763, "eta_prime": -60.950, "theta_prime": 68.464, "eta_base": 6.858, "theta_base": 22.370, "v0": -2.696, "v1": -18.690, "v2": 31.655, "v3": -34.116, "v4": 23.299, "amplitude": 34.398, "phase_angle": 23.033, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "8d", "suiteness": 0.560, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 132.187, 197.226, 168.949 ], "x_axis": [ -0.299, 0.863, -0.407 ], "y_axis": [ -0.030, 0.418, 0.908 ], "z_axis": [ 0.954, 0.283, -0.099 ], "quaternion": [ 0.505, 0.309, 0.674, 0.442 ] } }, { "index": 489, "index_chain": 489, "chain_name": "A", "nt_resnum": 491, "nt_name": "C", "nt_code": "C", "nt_id": "///A/491", "linked_nts": [ "///A/490", "///A/492" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart", "alpha": 62.771, "beta": 104.839, "gamma": -174.155, "delta": 77.407, "epsilon": -153.791, "zeta": -68.913, "epsilon_zeta": -84.877, "bb_type": "BI", "chi": -164.158, "glyco_bond": "anti", "C5prime_xyz": [ -1.687, 8.872, 0.709 ], "P_xyz": [ -2.625, 11.049, -0.443 ], "form": ".", "ssZp": 4.468, "Dp": 4.562, "splay_angle": 31.278, "splay_distance": 5.048, "splay_ratio": 0.273, "d22": 4.741, "d64": 4.885, "eta": 78.276, "theta": 146.012, "eta_prime": 72.944, "theta_prime": 169.109, "eta_base": 118.318, "theta_base": -159.535, "v0": -2.636, "v1": -21.542, "v2": 36.147, "v3": -38.588, "v4": 25.968, "amplitude": 39.072, "phase_angle": 22.310, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "5j", "suiteness": 0.397, "filter_rmsd": 0.060, "frame": { "rmsd": 0.010, "origin": [ 139.432, 202.321, 187.180 ], "x_axis": [ -0.882, 0.362, 0.300 ], "y_axis": [ -0.416, -0.302, -0.858 ], "z_axis": [ -0.220, -0.882, 0.418 ], "quaternion": [ 0.241, 0.025, -0.539, 0.807 ] } }, { "index": 490, "index_chain": 490, "chain_name": "A", "nt_resnum": 492, "nt_name": "C", "nt_code": "C", "nt_id": "///A/492", "linked_nts": [ "///A/491", "///A/493" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,phosphate", "alpha": -75.772, "beta": -158.683, "gamma": 45.398, "delta": 82.664, "epsilon": -149.360, "zeta": -72.109, "epsilon_zeta": -77.251, "bb_type": "BI", "chi": -170.686, "glyco_bond": "anti", "C5prime_xyz": [ -1.527, 8.762, 1.076 ], "P_xyz": [ 0.476, 9.257, 2.683 ], "form": ".", "ssZp": 4.330, "Dp": 4.434, "splay_angle": 19.599, "splay_distance": 3.114, "splay_ratio": 0.170, "d22": null, "d64": null, "eta": 171.301, "theta": -147.263, "eta_prime": 176.135, "theta_prime": -134.755, "eta_base": -155.778, "theta_base": -89.864, "v0": -3.009, "v1": -18.598, "v2": 31.812, "v3": -34.467, "v4": 23.684, "amplitude": 34.687, "phase_angle": 23.495, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.590, "filter_rmsd": 0.064, "frame": { "rmsd": 0.011, "origin": [ 138.384, 199.089, 190.914 ], "x_axis": [ -0.619, 0.696, -0.363 ], "y_axis": [ 0.242, -0.271, -0.932 ], "z_axis": [ -0.747, -0.665, -0.001 ], "quaternion": [ 0.165, -0.404, -0.581, 0.687 ] } }, { "index": 491, "index_chain": 491, "chain_name": "A", "nt_resnum": 493, "nt_name": "G", "nt_code": "G", "nt_id": "///A/493", "linked_nts": [ "///A/492", "///A/494" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,junction-loop,phosphate", "alpha": -59.844, "beta": 169.067, "gamma": 64.518, "delta": 141.420, "epsilon": -96.298, "zeta": 135.960, "epsilon_zeta": 127.742, "bb_type": "BII", "chi": -141.063, "glyco_bond": "anti", "C5prime_xyz": [ -1.646, 8.785, -0.158 ], "P_xyz": [ 0.804, 9.135, 0.664 ], "form": ".", "ssZp": 1.092, "Dp": 1.128, "splay_angle": 65.972, "splay_distance": 10.831, "splay_ratio": 0.545, "d22": null, "d64": null, "eta": -161.342, "theta": 136.038, "eta_prime": -133.933, "theta_prime": 134.838, "eta_base": -89.506, "theta_base": 150.382, "v0": -21.575, "v1": 33.346, "v2": -31.827, "v3": 20.176, "v4": 0.693, "amplitude": 33.846, "phase_angle": 160.111, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.892, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 135.395, 198.216, 190.923 ], "x_axis": [ -0.197, 0.440, -0.876 ], "y_axis": [ 0.500, -0.723, -0.476 ], "z_axis": [ -0.843, -0.532, -0.078 ], "quaternion": [ -0.022, -0.633, -0.371, 0.679 ] } }, { "index": 492, "index_chain": 492, "chain_name": "A", "nt_resnum": 494, "nt_name": "A", "nt_code": "A", "nt_id": "///A/494", "linked_nts": [ "///A/493", "///A/495" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart", "alpha": -77.301, "beta": 174.039, "gamma": 48.484, "delta": 142.349, "epsilon": -121.137, "zeta": 108.039, "epsilon_zeta": 130.824, "bb_type": "--", "chi": -128.891, "glyco_bond": "anti", "C5prime_xyz": [ -1.980, 8.672, -0.788 ], "P_xyz": [ 0.275, 9.621, 0.129 ], "form": ".", "ssZp": 1.467, "Dp": 1.480, "splay_angle": 169.159, "splay_distance": 19.055, "splay_ratio": 0.996, "d22": null, "d64": null, "eta": -144.366, "theta": 124.939, "eta_prime": -144.255, "theta_prime": 87.151, "eta_base": -149.534, "theta_base": -152.033, "v0": -23.118, "v1": 35.331, "v2": -33.424, "v3": 20.932, "v4": 1.164, "amplitude": 35.709, "phase_angle": 159.392, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "0b", "suiteness": 0.487, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 140.938, 194.796, 199.578 ], "x_axis": [ -0.961, 0.262, -0.091 ], "y_axis": [ -0.087, -0.597, -0.797 ], "z_axis": [ -0.263, -0.758, 0.596 ], "quaternion": [ 0.098, -0.100, -0.438, 0.888 ] } }, { "index": 493, "index_chain": 493, "chain_name": "A", "nt_resnum": 495, "nt_name": "U", "nt_code": "U", "nt_id": "///A/495", "linked_nts": [ "///A/494", "///A/496" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-canonical,multiplet,junction-loop,splayed-apart", "alpha": 67.943, "beta": 152.229, "gamma": 60.136, "delta": 148.563, "epsilon": -92.636, "zeta": -50.727, "epsilon_zeta": -41.908, "bb_type": "--", "chi": -123.493, "glyco_bond": "anti", "C5prime_xyz": [ -2.189, 8.567, -1.025 ], "P_xyz": [ 0.369, 9.099, -0.790 ], "form": ".", "ssZp": 0.722, "Dp": 0.713, "splay_angle": 123.383, "splay_distance": 16.701, "splay_ratio": 0.881, "d22": null, "d64": null, "eta": -10.626, "theta": -25.772, "eta_prime": 9.276, "theta_prime": -48.651, "eta_base": -118.277, "theta_base": -13.168, "v0": -23.644, "v1": 38.129, "v2": -37.149, "v3": 24.498, "v4": -0.752, "amplitude": 38.998, "phase_angle": 162.284, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.554, "filter_rmsd": 0.097, "frame": { "rmsd": 0.011, "origin": [ 150.546, 180.303, 191.782 ], "x_axis": [ -0.653, -0.595, 0.467 ], "y_axis": [ -0.562, 0.795, 0.228 ], "z_axis": [ -0.507, -0.114, -0.854 ], "quaternion": [ -0.268, -0.318, 0.909, 0.031 ] } }, { "index": 494, "index_chain": 494, "chain_name": "A", "nt_resnum": 496, "nt_name": "A", "nt_code": "A", "nt_id": "///A/496", "linked_nts": [ "///A/495", "///A/497" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,splayed-apart", "alpha": -82.223, "beta": -178.326, "gamma": 70.410, "delta": 84.062, "epsilon": -147.927, "zeta": -46.757, "epsilon_zeta": -101.170, "bb_type": "BI", "chi": -179.845, "glyco_bond": "anti", "C5prime_xyz": [ -1.643, 8.407, 1.646 ], "P_xyz": [ 0.861, 8.728, 2.323 ], "form": ".", "ssZp": 4.492, "Dp": 4.538, "splay_angle": 28.451, "splay_distance": 4.466, "splay_ratio": 0.249, "d22": null, "d64": null, "eta": 151.671, "theta": -116.056, "eta_prime": -159.595, "theta_prime": -117.403, "eta_base": -140.394, "theta_base": -63.813, "v0": 0.226, "v1": -21.540, "v2": 33.354, "v3": -34.141, "v4": 21.409, "amplitude": 35.114, "phase_angle": 18.217, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.384, "filter_rmsd": 0.042, "frame": { "rmsd": 0.014, "origin": [ 143.003, 195.166, 192.845 ], "x_axis": [ 0.385, -0.151, 0.911 ], "y_axis": [ 0.559, -0.747, -0.360 ], "z_axis": [ 0.735, 0.647, -0.204 ], "quaternion": [ -0.329, 0.764, 0.133, 0.538 ] } }, { "index": 495, "index_chain": 495, "chain_name": "A", "nt_resnum": 497, "nt_name": "G", "nt_code": "G", "nt_id": "///A/497", "linked_nts": [ "///A/496", "///A/498" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop", "alpha": -86.883, "beta": -172.760, "gamma": 51.167, "delta": 81.083, "epsilon": -139.419, "zeta": -60.627, "epsilon_zeta": -78.792, "bb_type": "BI", "chi": -160.283, "glyco_bond": "anti", "C5prime_xyz": [ -1.291, 8.727, 0.534 ], "P_xyz": [ 1.227, 9.201, 1.057 ], "form": ".", "ssZp": 4.399, "Dp": 4.684, "splay_angle": 46.979, "splay_distance": 8.175, "splay_ratio": 0.409, "d22": null, "d64": null, "eta": 153.979, "theta": -94.240, "eta_prime": 178.173, "theta_prime": -128.215, "eta_base": -103.557, "theta_base": -168.500, "v0": 2.489, "v1": -24.592, "v2": 36.154, "v3": -35.707, "v4": 20.984, "amplitude": 37.412, "phase_angle": 14.902, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.401, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 146.737, 196.272, 195.031 ], "x_axis": [ 0.639, -0.756, 0.142 ], "y_axis": [ -0.022, -0.202, -0.979 ], "z_axis": [ 0.769, 0.623, -0.146 ], "quaternion": [ 0.568, -0.705, 0.276, -0.323 ] } }, { "index": 496, "index_chain": 496, "chain_name": "A", "nt_resnum": 498, "nt_name": "U", "nt_code": "U", "nt_id": "///A/498", "linked_nts": [ "///A/497", "///A/499" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop", "alpha": 120.231, "beta": 135.866, "gamma": 174.069, "delta": 81.969, "epsilon": -117.984, "zeta": -69.642, "epsilon_zeta": -48.342, "bb_type": "--", "chi": -140.448, "glyco_bond": "anti", "C5prime_xyz": [ -2.046, 8.816, -0.698 ], "P_xyz": [ -2.550, 10.325, -2.777 ], "form": ".", "ssZp": 3.209, "Dp": 4.429, "splay_angle": 43.513, "splay_distance": 7.299, "splay_ratio": 0.371, "d22": null, "d64": null, "eta": 87.012, "theta": -138.175, "eta_prime": 102.589, "theta_prime": -161.646, "eta_base": 78.081, "theta_base": 154.277, "v0": -7.712, "v1": -14.964, "v2": 30.433, "v3": -35.757, "v4": 27.495, "amplitude": 35.457, "phase_angle": 30.875, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.100, "frame": { "rmsd": 0.011, "origin": [ 148.546, 204.065, 196.716 ], "x_axis": [ -0.561, -0.615, 0.554 ], "y_axis": [ 0.063, -0.699, -0.712 ], "z_axis": [ 0.826, -0.365, 0.431 ], "quaternion": [ -0.207, 0.421, -0.328, 0.820 ] } }, { "index": 497, "index_chain": 497, "chain_name": "A", "nt_resnum": 499, "nt_name": "G", "nt_code": "G", "nt_id": "///A/499", "linked_nts": [ "///A/498", "///A/500" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop", "alpha": -172.829, "beta": -167.752, "gamma": 41.833, "delta": 87.659, "epsilon": -150.866, "zeta": -69.344, "epsilon_zeta": -81.522, "bb_type": "BI", "chi": -152.621, "glyco_bond": "anti", "C5prime_xyz": [ -1.342, 8.820, 0.162 ], "P_xyz": [ 0.930, 9.502, 1.262 ], "form": "B", "ssZp": 3.934, "Dp": 4.297, "splay_angle": 19.861, "splay_distance": 3.240, "splay_ratio": 0.175, "d22": null, "d64": null, "eta": 44.076, "theta": -141.685, "eta_prime": 76.305, "theta_prime": -137.294, "eta_base": 60.087, "theta_base": -89.895, "v0": -2.224, "v1": -17.044, "v2": 28.597, "v3": -30.750, "v4": 20.833, "amplitude": 30.991, "phase_angle": 22.671, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.310, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 155.806, 203.896, 197.457 ], "x_axis": [ -0.007, 0.728, -0.685 ], "y_axis": [ -0.131, -0.680, -0.721 ], "z_axis": [ -0.991, 0.084, 0.100 ], "quaternion": [ 0.321, -0.627, -0.238, 0.669 ] } }, { "index": 498, "index_chain": 498, "chain_name": "A", "nt_resnum": 500, "nt_name": "A", "nt_code": "A", "nt_id": "///A/500", "linked_nts": [ "///A/499", "///A/501" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,cap-donor,splayed-apart", "alpha": -71.489, "beta": 172.470, "gamma": 53.379, "delta": 83.449, "epsilon": -107.404, "zeta": -129.675, "epsilon_zeta": 22.271, "bb_type": "--", "chi": -134.843, "glyco_bond": "anti", "C5prime_xyz": [ -1.267, 8.548, -0.978 ], "P_xyz": [ 1.269, 8.727, -1.581 ], "form": ".", "ssZp": 2.751, "Dp": 4.730, "splay_angle": 120.806, "splay_distance": 16.746, "splay_ratio": 0.870, "d22": null, "d64": null, "eta": 172.444, "theta": -138.092, "eta_prime": -173.945, "theta_prime": -141.639, "eta_base": -120.907, "theta_base": -107.001, "v0": 3.215, "v1": -24.377, "v2": 35.068, "v3": -34.193, "v4": 19.582, "amplitude": 36.086, "phase_angle": 13.636, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.866, "filter_rmsd": 0.041, "frame": { "rmsd": 0.013, "origin": [ 152.821, 204.783, 196.561 ], "x_axis": [ -0.168, 0.127, -0.978 ], "y_axis": [ -0.363, -0.930, -0.058 ], "z_axis": [ -0.917, 0.345, 0.202 ], "quaternion": [ 0.161, -0.624, 0.095, 0.758 ] } }, { "index": 499, "index_chain": 499, "chain_name": "A", "nt_resnum": 501, "nt_name": "A", "nt_code": "A", "nt_id": "///A/501", "linked_nts": [ "///A/500", "///A/502" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart", "alpha": 52.356, "beta": 165.880, "gamma": 58.408, "delta": 144.400, "epsilon": -86.618, "zeta": -73.388, "epsilon_zeta": -13.230, "bb_type": "--", "chi": -115.024, "glyco_bond": "anti", "C5prime_xyz": [ -2.258, 8.425, -1.503 ], "P_xyz": [ 0.194, 9.308, -1.399 ], "form": ".", "ssZp": 0.523, "Dp": 0.582, "splay_angle": 81.201, "splay_distance": 12.770, "splay_ratio": 0.651, "d22": null, "d64": null, "eta": -57.470, "theta": -46.992, "eta_prime": -41.281, "theta_prime": -67.283, "eta_base": -82.016, "theta_base": -53.698, "v0": -24.372, "v1": 37.199, "v2": -35.148, "v3": 22.010, "v4": 1.251, "amplitude": 37.567, "phase_angle": 159.330, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "7p", "suiteness": 0.404, "filter_rmsd": 0.041, "frame": { "rmsd": 0.011, "origin": [ 138.311, 196.616, 194.778 ], "x_axis": [ 0.274, -0.720, -0.637 ], "y_axis": [ 0.889, -0.062, 0.453 ], "z_axis": [ -0.366, -0.691, 0.623 ], "quaternion": [ 0.677, 0.422, 0.100, -0.594 ] } }, { "index": 500, "index_chain": 500, "chain_name": "A", "nt_resnum": 502, "nt_name": "C", "nt_code": "C", "nt_id": "///A/502", "linked_nts": [ "///A/501", "///A/503" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": -77.986, "beta": -173.593, "gamma": 42.051, "delta": 144.799, "epsilon": -110.337, "zeta": -65.897, "epsilon_zeta": -44.440, "bb_type": "--", "chi": -91.747, "glyco_bond": "anti", "C5prime_xyz": [ -2.578, 7.822, -2.419 ], "P_xyz": [ -0.379, 9.180, -2.770 ], "form": ".", "ssZp": 1.010, "Dp": 1.261, "splay_angle": 137.648, "splay_distance": 18.548, "splay_ratio": 0.933, "d22": 11.328, "d64": 14.862, "eta": 144.949, "theta": -58.683, "eta_prime": -161.395, "theta_prime": -98.902, "eta_base": -147.666, "theta_base": -132.998, "v0": -23.505, "v1": 36.419, "v2": -34.742, "v3": 22.050, "v4": 0.700, "amplitude": 36.933, "phase_angle": 160.162, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.544, "filter_rmsd": 0.061, "frame": { "rmsd": 0.008, "origin": [ 146.304, 190.947, 202.966 ], "x_axis": [ 0.485, 0.068, -0.872 ], "y_axis": [ -0.018, 0.998, 0.067 ], "z_axis": [ 0.874, -0.017, 0.485 ], "quaternion": [ 0.861, 0.025, 0.507, 0.025 ] } }, { "index": 501, "index_chain": 501, "chain_name": "A", "nt_resnum": 503, "nt_name": "C", "nt_code": "C", "nt_id": "///A/503", "linked_nts": [ "///A/502", "///A/504" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BII,non-canonical,multiplet,junction-loop,splayed-apart", "alpha": -53.741, "beta": -177.838, "gamma": 168.981, "delta": 150.526, "epsilon": -119.973, "zeta": -173.117, "epsilon_zeta": 53.144, "bb_type": "BII", "chi": -146.236, "glyco_bond": "anti", "C5prime_xyz": [ -1.294, 8.561, 0.333 ], "P_xyz": [ 0.980, 9.522, -0.533 ], "form": ".", "ssZp": 1.419, "Dp": 1.430, "splay_angle": 176.525, "splay_distance": 19.358, "splay_ratio": 1.000, "d22": null, "d64": null, "eta": -36.959, "theta": 115.712, "eta_prime": 7.340, "theta_prime": 109.960, "eta_base": 43.362, "theta_base": -123.768, "v0": -15.068, "v1": 31.383, "v2": -34.730, "v3": 26.970, "v4": -7.693, "amplitude": 34.941, "phase_angle": 173.707, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "2u", "suiteness": 0.331, "filter_rmsd": 0.061, "frame": { "rmsd": 0.006, "origin": [ 148.597, 203.933, 216.011 ], "x_axis": [ -0.843, -0.210, 0.495 ], "y_axis": [ -0.332, -0.520, -0.787 ], "z_axis": [ 0.423, -0.828, 0.369 ], "quaternion": [ 0.037, 0.277, -0.488, 0.827 ] } }, { "index": 502, "index_chain": 502, "chain_name": "A", "nt_resnum": 504, "nt_name": "A", "nt_code": "A", "nt_id": "///A/504", "linked_nts": [ "///A/503", "///A/505" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-acceptor,splayed-apart", "alpha": -87.622, "beta": -139.066, "gamma": 168.807, "delta": 149.681, "epsilon": -101.154, "zeta": -160.645, "epsilon_zeta": 59.491, "bb_type": "BII", "chi": -161.489, "glyco_bond": "anti", "C5prime_xyz": [ -2.109, 8.519, 1.061 ], "P_xyz": [ 0.385, 9.241, 0.773 ], "form": ".", "ssZp": 0.707, "Dp": 0.911, "splay_angle": 41.565, "splay_distance": 6.976, "splay_ratio": 0.355, "d22": null, "d64": null, "eta": 25.904, "theta": 147.323, "eta_prime": 14.311, "theta_prime": 147.421, "eta_base": -115.558, "theta_base": 163.149, "v0": -22.222, "v1": 37.337, "v2": -37.244, "v3": 25.369, "v4": -2.194, "amplitude": 38.668, "phase_angle": 164.403, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.011, "origin": [ 154.440, 195.646, 199.521 ], "x_axis": [ -0.368, -0.856, 0.364 ], "y_axis": [ -0.233, 0.464, 0.855 ], "z_axis": [ -0.900, 0.230, -0.370 ], "quaternion": [ -0.426, -0.367, 0.742, 0.365 ] } }, { "index": 503, "index_chain": 503, "chain_name": "A", "nt_resnum": 505, "nt_name": "G", "nt_code": "G", "nt_id": "///A/505", "linked_nts": [ "///A/504", "///A/506" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,cap-acceptor", "alpha": -88.014, "beta": 72.177, "gamma": 173.416, "delta": 150.636, "epsilon": -148.891, "zeta": 139.629, "epsilon_zeta": 71.479, "bb_type": "--", "chi": -120.047, "glyco_bond": "anti", "C5prime_xyz": [ -2.041, 8.564, -1.173 ], "P_xyz": [ -2.431, 8.827, -3.748 ], "form": ".", "ssZp": 1.623, "Dp": 1.759, "splay_angle": 58.041, "splay_distance": 8.824, "splay_ratio": 0.487, "d22": null, "d64": null, "eta": -53.008, "theta": 23.418, "eta_prime": -91.271, "theta_prime": 60.237, "eta_base": -98.781, "theta_base": 94.242, "v0": -22.908, "v1": 38.226, "v2": -38.084, "v3": 25.864, "v4": -2.050, "amplitude": 39.584, "phase_angle": 164.177, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "4s", "suiteness": 0.433, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 159.084, 199.543, 196.071 ], "x_axis": [ -0.129, 0.547, -0.827 ], "y_axis": [ -0.140, 0.816, 0.561 ], "z_axis": [ 0.982, 0.188, -0.029 ], "quaternion": [ 0.644, 0.145, 0.702, 0.267 ] } }, { "index": 504, "index_chain": 504, "chain_name": "A", "nt_resnum": 506, "nt_name": "U", "nt_code": "U", "nt_id": "///A/506", "linked_nts": [ "///A/505", "///A/507" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate", "alpha": -65.938, "beta": 152.752, "gamma": 28.689, "delta": 81.090, "epsilon": -137.823, "zeta": -74.474, "epsilon_zeta": -63.348, "bb_type": "BI", "chi": 179.391, "glyco_bond": "anti", "C5prime_xyz": [ -1.232, 8.287, 1.735 ], "P_xyz": [ 1.219, 8.071, 2.637 ], "form": "A", "ssZp": 4.762, "Dp": 4.746, "splay_angle": 27.844, "splay_distance": 4.245, "splay_ratio": 0.244, "d22": null, "d64": null, "eta": 168.355, "theta": -135.703, "eta_prime": 158.317, "theta_prime": -131.264, "eta_base": 164.575, "theta_base": -103.435, "v0": 5.723, "v1": -27.435, "v2": 37.543, "v3": -35.232, "v4": 18.626, "amplitude": 38.141, "phase_angle": 10.157, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.395, "filter_rmsd": 0.105, "frame": { "rmsd": 0.008, "origin": [ 157.244, 194.767, 203.259 ], "x_axis": [ 0.379, 0.206, -0.902 ], "y_axis": [ 0.035, 0.971, 0.237 ], "z_axis": [ 0.925, -0.121, 0.360 ], "quaternion": [ 0.823, 0.109, 0.555, 0.052 ] } }, { "index": 505, "index_chain": 505, "chain_name": "A", "nt_resnum": 507, "nt_name": "A", "nt_code": "A", "nt_id": "///A/507", "linked_nts": [ "///A/506", "///A/508" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -59.698, "beta": 171.415, "gamma": 55.664, "delta": 81.984, "epsilon": -127.766, "zeta": -59.522, "epsilon_zeta": -68.244, "bb_type": "BI", "chi": -175.648, "glyco_bond": "anti", "C5prime_xyz": [ -1.495, 8.471, 1.428 ], "P_xyz": [ 1.031, 8.772, 2.023 ], "form": ".", "ssZp": 4.637, "Dp": 4.693, "splay_angle": 37.116, "splay_distance": 5.752, "splay_ratio": 0.319, "d22": null, "d64": null, "eta": 175.644, "theta": -114.343, "eta_prime": -170.049, "theta_prime": -108.745, "eta_base": -127.658, "theta_base": -58.915, "v0": 1.685, "v1": -23.588, "v2": 35.336, "v3": -35.330, "v4": 21.199, "amplitude": 36.767, "phase_angle": 16.035, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.918, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 161.055, 192.914, 203.000 ], "x_axis": [ 0.252, 0.759, -0.600 ], "y_axis": [ -0.290, 0.651, 0.701 ], "z_axis": [ 0.923, -0.003, 0.384 ], "quaternion": [ 0.756, 0.233, 0.504, 0.347 ] } }, { "index": 506, "index_chain": 506, "chain_name": "A", "nt_resnum": 508, "nt_name": "C", "nt_code": "C", "nt_id": "///A/508", "linked_nts": [ "///A/507", "///A/509" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop", "alpha": -57.584, "beta": 163.286, "gamma": 53.618, "delta": 78.751, "epsilon": -147.730, "zeta": -74.462, "epsilon_zeta": -73.268, "bb_type": "BI", "chi": -166.800, "glyco_bond": "anti", "C5prime_xyz": [ -1.392, 8.729, 0.912 ], "P_xyz": [ 1.193, 9.120, 1.025 ], "form": "A", "ssZp": 4.563, "Dp": 4.644, "splay_angle": 25.334, "splay_distance": 4.094, "splay_ratio": 0.224, "d22": 4.425, "d64": 4.846, "eta": 159.294, "theta": -145.715, "eta_prime": -169.308, "theta_prime": -145.155, "eta_base": -91.300, "theta_base": -124.693, "v0": 1.028, "v1": -24.334, "v2": 37.185, "v3": -37.567, "v4": 23.002, "amplitude": 38.905, "phase_angle": 17.100, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.687, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 164.828, 197.251, 202.813 ], "x_axis": [ -0.155, 0.918, 0.366 ], "y_axis": [ -0.331, -0.397, 0.856 ], "z_axis": [ 0.931, 0.011, 0.365 ], "quaternion": [ 0.451, 0.468, 0.313, 0.692 ] } }, { "index": 507, "index_chain": 507, "chain_name": "A", "nt_resnum": 509, "nt_name": "C", "nt_code": "C", "nt_id": "///A/509", "linked_nts": [ "///A/508", "///A/510" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": -55.536, "beta": 171.251, "gamma": 54.646, "delta": 79.007, "epsilon": -145.008, "zeta": -77.513, "epsilon_zeta": -67.495, "bb_type": "BI", "chi": -164.540, "glyco_bond": "anti", "C5prime_xyz": [ -1.519, 8.826, 0.754 ], "P_xyz": [ 0.992, 9.453, 1.094 ], "form": ".", "ssZp": 4.451, "Dp": 4.584, "splay_angle": 19.184, "splay_distance": 3.438, "splay_ratio": 0.178, "d22": null, "d64": null, "eta": 176.109, "theta": -117.787, "eta_prime": -171.851, "theta_prime": -130.391, "eta_base": -138.526, "theta_base": -104.386, "v0": -2.553, "v1": -20.688, "v2": 34.745, "v3": -37.175, "v4": 25.073, "amplitude": 37.585, "phase_angle": 22.417, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.901, "filter_rmsd": 0.060, "frame": { "rmsd": 0.009, "origin": [ 168.604, 198.833, 202.794 ], "x_axis": [ -0.388, 0.598, 0.701 ], "y_axis": [ -0.207, -0.798, 0.566 ], "z_axis": [ 0.898, 0.074, 0.434 ], "quaternion": [ 0.249, 0.494, 0.198, 0.809 ] } }, { "index": 508, "index_chain": 508, "chain_name": "A", "nt_resnum": 510, "nt_name": "G", "nt_code": "G", "nt_id": "///A/510", "linked_nts": [ "///A/509", "///A/511" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,cap-acceptor", "alpha": 147.888, "beta": -166.062, "gamma": 172.413, "delta": 79.403, "epsilon": -102.494, "zeta": -95.184, "epsilon_zeta": -7.311, "bb_type": "--", "chi": -166.599, "glyco_bond": "anti", "C5prime_xyz": [ -1.250, 8.592, 0.887 ], "P_xyz": [ 0.076, 10.241, -0.632 ], "form": ".", "ssZp": 4.369, "Dp": 4.829, "splay_angle": 81.714, "splay_distance": 11.889, "splay_ratio": 0.654, "d22": null, "d64": null, "eta": 148.965, "theta": -121.025, "eta_prime": 164.939, "theta_prime": -162.454, "eta_base": -150.789, "theta_base": 148.640, "v0": 5.165, "v1": -27.850, "v2": 38.793, "v3": -36.868, "v4": 19.990, "amplitude": 39.559, "phase_angle": 11.294, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.721, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 170.363, 201.367, 204.313 ], "x_axis": [ -0.618, 0.058, 0.784 ], "y_axis": [ 0.240, -0.936, 0.258 ], "z_axis": [ 0.749, 0.347, 0.564 ], "quaternion": [ -0.052, 0.434, 0.171, 0.883 ] } }, { "index": 509, "index_chain": 509, "chain_name": "A", "nt_resnum": 511, "nt_name": "U", "nt_code": "U", "nt_id": "///A/511", "linked_nts": [ "///A/510", "///A/512" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": 129.497, "beta": -173.670, "gamma": 70.929, "delta": 89.395, "epsilon": -160.849, "zeta": -46.277, "epsilon_zeta": -114.572, "bb_type": "BI", "chi": -163.913, "glyco_bond": "anti", "C5prime_xyz": [ -1.487, 8.665, 0.774 ], "P_xyz": [ 1.056, 8.947, 1.298 ], "form": ".", "ssZp": 4.121, "Dp": 4.261, "splay_angle": 31.071, "splay_distance": 4.823, "splay_ratio": 0.268, "d22": null, "d64": null, "eta": 1.210, "theta": -118.322, "eta_prime": 39.419, "theta_prime": -118.418, "eta_base": 26.335, "theta_base": -64.208, "v0": -1.050, "v1": -17.947, "v2": 28.827, "v3": -30.266, "v4": 19.826, "amplitude": 30.779, "phase_angle": 20.513, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.011, "origin": [ 182.116, 201.364, 202.522 ], "x_axis": [ 0.248, -0.820, -0.515 ], "y_axis": [ -0.506, -0.563, 0.653 ], "z_axis": [ -0.826, 0.099, -0.555 ], "quaternion": [ 0.180, 0.769, -0.431, -0.436 ] } }, { "index": 510, "index_chain": 510, "chain_name": "A", "nt_resnum": 512, "nt_name": "G", "nt_code": "G", "nt_id": "///A/512", "linked_nts": [ "///A/511", "///A/513" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-donor,phosphate", "alpha": -93.676, "beta": -166.799, "gamma": 60.199, "delta": 89.548, "epsilon": -155.813, "zeta": -84.007, "epsilon_zeta": -71.806, "bb_type": "BI", "chi": -133.550, "glyco_bond": "anti", "C5prime_xyz": [ -1.096, 8.549, -0.942 ], "P_xyz": [ 1.525, 8.636, -0.947 ], "form": ".", "ssZp": 3.370, "Dp": 4.431, "splay_angle": 20.465, "splay_distance": 3.403, "splay_ratio": 0.184, "d22": null, "d64": null, "eta": 163.298, "theta": -152.784, "eta_prime": -170.044, "theta_prime": -154.573, "eta_base": -98.437, "theta_base": -141.846, "v0": 4.001, "v1": -22.096, "v2": 30.778, "v3": -29.366, "v4": 16.053, "amplitude": 31.412, "phase_angle": 11.529, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.184, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 179.062, 198.430, 200.214 ], "x_axis": [ -0.346, -0.877, 0.335 ], "y_axis": [ -0.591, 0.481, 0.648 ], "z_axis": [ -0.729, 0.026, -0.684 ], "quaternion": [ -0.336, -0.463, 0.792, 0.213 ] } }, { "index": 511, "index_chain": 511, "chain_name": "A", "nt_resnum": 513, "nt_name": "A", "nt_code": "A", "nt_id": "///A/513", "linked_nts": [ "///A/512", "///A/514" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,phosphate", "alpha": -65.020, "beta": 161.576, "gamma": 56.895, "delta": 82.985, "epsilon": -108.798, "zeta": -53.283, "epsilon_zeta": -55.515, "bb_type": "--", "chi": -135.106, "glyco_bond": "anti", "C5prime_xyz": [ -1.314, 8.565, -0.966 ], "P_xyz": [ 1.142, 8.546, -1.865 ], "form": ".", "ssZp": 2.805, "Dp": 4.744, "splay_angle": 60.282, "splay_distance": 9.585, "splay_ratio": 0.503, "d22": null, "d64": null, "eta": 175.977, "theta": -93.998, "eta_prime": -177.635, "theta_prime": -84.734, "eta_base": -158.589, "theta_base": -59.838, "v0": 3.567, "v1": -25.350, "v2": 36.295, "v3": -35.197, "v4": 19.992, "amplitude": 37.285, "phase_angle": 13.234, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.716, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 176.654, 198.991, 197.876 ], "x_axis": [ -0.523, -0.662, 0.537 ], "y_axis": [ -0.585, 0.737, 0.339 ], "z_axis": [ -0.620, -0.136, -0.773 ], "quaternion": [ -0.332, -0.358, 0.871, 0.058 ] } }, { "index": 512, "index_chain": 512, "chain_name": "A", "nt_resnum": 514, "nt_name": "G", "nt_code": "G", "nt_id": "///A/514", "linked_nts": [ "///A/513", "///A/515" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,phosphate", "alpha": -70.020, "beta": 151.071, "gamma": 91.673, "delta": 81.273, "epsilon": -152.647, "zeta": -71.853, "epsilon_zeta": -80.794, "bb_type": "BI", "chi": -172.528, "glyco_bond": "anti", "C5prime_xyz": [ -1.348, 8.528, 1.237 ], "P_xyz": [ 0.924, 9.206, 0.149 ], "form": "A", "ssZp": 4.647, "Dp": 4.653, "splay_angle": 22.650, "splay_distance": 3.635, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 167.466, "theta": -148.628, "eta_prime": -146.576, "theta_prime": -155.387, "eta_base": -91.495, "theta_base": -140.498, "v0": 4.495, "v1": -26.949, "v2": 37.957, "v3": -36.357, "v4": 20.112, "amplitude": 38.818, "phase_angle": 12.091, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 168.338, 198.579, 202.624 ], "x_axis": [ -0.346, 0.614, 0.710 ], "y_axis": [ 0.256, 0.789, -0.558 ], "z_axis": [ -0.903, -0.011, -0.430 ], "quaternion": [ 0.503, -0.272, -0.801, 0.178 ] } }, { "index": 513, "index_chain": 513, "chain_name": "A", "nt_resnum": 515, "nt_name": "G", "nt_code": "G", "nt_id": "///A/515", "linked_nts": [ "///A/514", "///A/516" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop", "alpha": -59.588, "beta": 175.541, "gamma": 52.697, "delta": 79.000, "epsilon": -132.767, "zeta": -68.618, "epsilon_zeta": -64.149, "bb_type": "BI", "chi": -164.524, "glyco_bond": "anti", "C5prime_xyz": [ -1.441, 8.748, 0.775 ], "P_xyz": [ 1.089, 9.274, 1.144 ], "form": ".", "ssZp": 4.474, "Dp": 4.708, "splay_angle": 33.816, "splay_distance": 5.271, "splay_ratio": 0.291, "d22": null, "d64": null, "eta": 176.165, "theta": -130.162, "eta_prime": -174.001, "theta_prime": -123.882, "eta_base": -143.975, "theta_base": -78.104, "v0": 1.433, "v1": -24.650, "v2": 37.286, "v3": -37.447, "v4": 22.703, "amplitude": 38.895, "phase_angle": 16.535, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.958, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 165.071, 197.028, 202.984 ], "x_axis": [ -0.185, 0.920, 0.346 ], "y_axis": [ 0.324, 0.389, -0.862 ], "z_axis": [ -0.928, -0.048, -0.371 ], "quaternion": [ -0.456, 0.446, 0.697, -0.326 ] } }, { "index": 514, "index_chain": 514, "chain_name": "A", "nt_resnum": 516, "nt_name": "G", "nt_code": "G", "nt_id": "///A/516", "linked_nts": [ "///A/515", "///A/517" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -54.733, "beta": 160.738, "gamma": 58.188, "delta": 78.237, "epsilon": -156.968, "zeta": -81.794, "epsilon_zeta": -75.175, "bb_type": "BI", "chi": -162.912, "glyco_bond": "anti", "C5prime_xyz": [ -1.201, 8.727, 0.679 ], "P_xyz": [ 1.371, 9.035, 0.392 ], "form": ".", "ssZp": 4.499, "Dp": 4.619, "splay_angle": 69.686, "splay_distance": 11.180, "splay_ratio": 0.578, "d22": null, "d64": null, "eta": 165.574, "theta": 175.738, "eta_prime": -167.812, "theta_prime": 160.315, "eta_base": -100.148, "theta_base": 150.044, "v0": 2.979, "v1": -26.338, "v2": 38.506, "v3": -37.824, "v4": 21.963, "amplitude": 39.759, "phase_angle": 14.419, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.757, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 161.326, 200.658, 202.214 ], "x_axis": [ 0.172, 0.858, -0.483 ], "y_axis": [ 0.287, -0.513, -0.809 ], "z_axis": [ -0.942, 0.000, -0.334 ], "quaternion": [ -0.285, 0.711, 0.403, -0.502 ] } }, { "index": 515, "index_chain": 515, "chain_name": "A", "nt_resnum": 517, "nt_name": "A", "nt_code": "A", "nt_id": "///A/517", "linked_nts": [ "///A/516", "///A/518" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate", "alpha": -111.284, "beta": 99.817, "gamma": 164.781, "delta": 80.309, "epsilon": -114.690, "zeta": -89.204, "epsilon_zeta": -25.485, "bb_type": "--", "chi": 166.308, "glyco_bond": "anti", "C5prime_xyz": [ -1.660, 7.992, 2.364 ], "P_xyz": [ -1.535, 10.475, 1.556 ], "form": "A", "ssZp": 4.731, "Dp": 4.754, "splay_angle": 26.349, "splay_distance": 3.981, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": -154.784, "theta": 171.597, "eta_prime": -178.198, "theta_prime": -169.960, "eta_base": 160.967, "theta_base": -117.840, "v0": 3.110, "v1": -25.350, "v2": 36.802, "v3": -35.969, "v4": 20.724, "amplitude": 37.928, "phase_angle": 13.997, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.816, "filter_rmsd": 0.044, "frame": { "rmsd": 0.011, "origin": [ 155.531, 191.972, 206.212 ], "x_axis": [ -0.153, 0.913, 0.378 ], "y_axis": [ 0.406, 0.407, -0.818 ], "z_axis": [ -0.901, 0.028, -0.433 ], "quaternion": [ -0.453, 0.467, 0.706, -0.280 ] } }, { "index": 516, "index_chain": 516, "chain_name": "A", "nt_resnum": 518, "nt_name": "A", "nt_code": "A", "nt_id": "///A/518", "linked_nts": [ "///A/517", "///A/519" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,phosphate", "alpha": -51.307, "beta": 150.664, "gamma": 56.881, "delta": 83.075, "epsilon": -131.070, "zeta": -66.738, "epsilon_zeta": -64.332, "bb_type": "BI", "chi": -178.677, "glyco_bond": "anti", "C5prime_xyz": [ -1.622, 8.470, 1.587 ], "P_xyz": [ 0.958, 8.654, 1.956 ], "form": ".", "ssZp": 4.539, "Dp": 4.586, "splay_angle": 25.932, "splay_distance": 4.109, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 167.515, "theta": -121.257, "eta_prime": -172.887, "theta_prime": -122.082, "eta_base": -113.332, "theta_base": -75.764, "v0": -0.789, "v1": -20.734, "v2": 33.127, "v3": -34.515, "v4": 22.264, "amplitude": 35.223, "phase_angle": 19.864, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.288, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 151.799, 193.356, 206.238 ], "x_axis": [ 0.216, 0.923, -0.320 ], "y_axis": [ 0.450, -0.384, -0.806 ], "z_axis": [ -0.867, 0.030, -0.498 ], "quaternion": [ -0.289, 0.724, 0.474, -0.409 ] } }, { "index": 517, "index_chain": 517, "chain_name": "A", "nt_resnum": 519, "nt_name": "A", "nt_code": "A", "nt_id": "///A/519", "linked_nts": [ "///A/518", "///A/520" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": -65.387, "beta": 163.170, "gamma": 55.849, "delta": 81.001, "epsilon": -129.904, "zeta": -89.683, "epsilon_zeta": -40.220, "bb_type": "--", "chi": -167.108, "glyco_bond": "anti", "C5prime_xyz": [ -1.624, 8.684, 0.907 ], "P_xyz": [ 0.927, 9.228, 1.089 ], "form": ".", "ssZp": 4.481, "Dp": 4.649, "splay_angle": 112.603, "splay_distance": 15.350, "splay_ratio": 0.832, "d22": null, "d64": null, "eta": 160.938, "theta": -149.309, "eta_prime": -176.005, "theta_prime": -139.992, "eta_base": -106.066, "theta_base": -125.867, "v0": -0.916, "v1": -21.375, "v2": 34.215, "v3": -35.720, "v4": 23.116, "amplitude": 36.417, "phase_angle": 20.024, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.798, "filter_rmsd": 0.039, "frame": { "rmsd": 0.009, "origin": [ 149.664, 195.901, 203.819 ], "x_axis": [ 0.509, 0.284, -0.812 ], "y_axis": [ 0.085, -0.956, -0.281 ], "z_axis": [ -0.856, 0.074, -0.511 ], "quaternion": [ -0.103, 0.863, 0.107, -0.484 ] } }, { "index": 518, "index_chain": 518, "chain_name": "A", "nt_resnum": 520, "nt_name": "G", "nt_code": "G", "nt_id": "///A/520", "linked_nts": [ "///A/519", "///A/521" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -71.670, "beta": -158.792, "gamma": 132.440, "delta": 82.753, "epsilon": -142.368, "zeta": -65.027, "epsilon_zeta": -77.340, "bb_type": "BI", "chi": 166.016, "glyco_bond": "anti", "C5prime_xyz": [ -1.851, 8.242, 2.284 ], "P_xyz": [ 0.633, 9.018, 2.563 ], "form": "A", "ssZp": 4.160, "Dp": 4.453, "splay_angle": 22.746, "splay_distance": 3.774, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": -100.676, "theta": -139.490, "eta_prime": -99.345, "theta_prime": -134.989, "eta_base": -98.231, "theta_base": -121.265, "v0": -3.252, "v1": -18.217, "v2": 31.466, "v3": -34.218, "v4": 23.658, "amplitude": 34.417, "phase_angle": 23.898, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.020, "frame": { "rmsd": 0.020, "origin": [ 136.870, 190.311, 197.440 ], "x_axis": [ 0.454, -0.383, -0.804 ], "y_axis": [ 0.884, 0.082, 0.460 ], "z_axis": [ -0.111, -0.920, 0.376 ], "quaternion": [ 0.691, 0.499, 0.251, -0.458 ] } }, { "index": 519, "index_chain": 519, "chain_name": "A", "nt_resnum": 521, "nt_name": "G", "nt_code": "G", "nt_id": "///A/521", "linked_nts": [ "///A/520", "///A/522" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -64.341, "beta": -158.613, "gamma": 48.340, "delta": 145.817, "epsilon": -81.596, "zeta": -122.174, "epsilon_zeta": 40.578, "bb_type": "--", "chi": -127.537, "glyco_bond": "anti", "C5prime_xyz": [ -1.633, 8.687, -0.811 ], "P_xyz": [ 0.351, 9.701, 0.565 ], "form": ".", "ssZp": 0.459, "Dp": 0.601, "splay_angle": 152.652, "splay_distance": 19.279, "splay_ratio": 0.972, "d22": null, "d64": null, "eta": -156.354, "theta": -65.569, "eta_prime": -134.035, "theta_prime": -102.266, "eta_base": -117.022, "theta_base": -140.280, "v0": -20.597, "v1": 34.739, "v2": -34.858, "v3": 23.825, "v4": -2.237, "amplitude": 36.133, "phase_angle": 164.737, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.650, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 134.442, 187.426, 197.303 ], "x_axis": [ 0.879, -0.165, -0.448 ], "y_axis": [ 0.475, 0.206, 0.856 ], "z_axis": [ -0.048, -0.965, 0.259 ], "quaternion": [ 0.766, 0.594, 0.131, -0.209 ] } }, { "index": 520, "index_chain": 520, "chain_name": "A", "nt_resnum": 522, "nt_name": "U", "nt_code": "U", "nt_id": "///A/522", "linked_nts": [ "///A/521", "///A/523" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,splayed-apart", "alpha": 43.172, "beta": 172.754, "gamma": 43.822, "delta": 80.376, "epsilon": -116.665, "zeta": -83.790, "epsilon_zeta": -32.875, "bb_type": "--", "chi": -155.361, "glyco_bond": "anti", "C5prime_xyz": [ -1.641, 8.790, 0.225 ], "P_xyz": [ 0.834, 9.549, 0.566 ], "form": ".", "ssZp": 3.986, "Dp": 4.656, "splay_angle": 29.703, "splay_distance": 4.819, "splay_ratio": 0.256, "d22": null, "d64": null, "eta": -100.404, "theta": -135.331, "eta_prime": -58.852, "theta_prime": -129.972, "eta_base": -9.824, "theta_base": -89.971, "v0": -0.536, "v1": -22.054, "v2": 34.946, "v3": -36.255, "v4": 23.198, "amplitude": 37.056, "phase_angle": 19.428, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "8d", "suiteness": 0.566, "filter_rmsd": 0.099, "frame": { "rmsd": 0.009, "origin": [ 128.928, 188.990, 215.710 ], "x_axis": [ 0.241, 0.965, 0.106 ], "y_axis": [ 0.496, -0.028, -0.868 ], "z_axis": [ -0.834, 0.262, -0.485 ], "quaternion": [ -0.427, 0.662, 0.551, -0.275 ] } }, { "index": 521, "index_chain": 521, "chain_name": "A", "nt_resnum": 523, "nt_name": "G", "nt_code": "G", "nt_id": "///A/523", "linked_nts": [ "///A/522", "///A/524" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor", "alpha": -65.143, "beta": 136.818, "gamma": 76.724, "delta": 74.277, "epsilon": -113.100, "zeta": -65.015, "epsilon_zeta": -48.084, "bb_type": "--", "chi": -165.280, "glyco_bond": "anti", "C5prime_xyz": [ -1.504, 8.736, 0.737 ], "P_xyz": [ 0.590, 9.258, -0.709 ], "form": ".", "ssZp": 4.374, "Dp": 4.845, "splay_angle": 73.591, "splay_distance": 10.800, "splay_ratio": 0.599, "d22": null, "d64": null, "eta": 164.098, "theta": -98.123, "eta_prime": -175.690, "theta_prime": -148.843, "eta_base": -122.070, "theta_base": 154.244, "v0": 1.883, "v1": -27.115, "v2": 40.806, "v3": -40.811, "v4": 24.523, "amplitude": 42.479, "phase_angle": 16.136, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.563, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 126.883, 192.792, 213.569 ], "x_axis": [ 0.552, 0.701, -0.452 ], "y_axis": [ 0.135, -0.610, -0.781 ], "z_axis": [ -0.823, 0.370, -0.432 ], "quaternion": [ -0.357, 0.805, 0.260, -0.396 ] } }, { "index": 522, "index_chain": 522, "chain_name": "A", "nt_resnum": 524, "nt_name": "A", "nt_code": "A", "nt_id": "///A/524", "linked_nts": [ "///A/523", "///A/525" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate", "alpha": 177.452, "beta": 145.630, "gamma": 51.886, "delta": 82.058, "epsilon": -142.105, "zeta": -64.741, "epsilon_zeta": -77.364, "bb_type": "BI", "chi": -153.030, "glyco_bond": "anti", "C5prime_xyz": [ -1.624, 8.805, 0.106 ], "P_xyz": [ 0.958, 9.065, -0.228 ], "form": "B", "ssZp": 4.105, "Dp": 4.539, "splay_angle": 21.503, "splay_distance": 3.440, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 13.814, "theta": -127.077, "eta_prime": 50.930, "theta_prime": -121.327, "eta_base": 31.264, "theta_base": -82.891, "v0": -1.762, "v1": -20.207, "v2": 33.185, "v3": -35.118, "v4": 23.292, "amplitude": 35.635, "phase_angle": 21.371, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.479, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 116.649, 189.435, 212.780 ], "x_axis": [ 0.221, -0.949, 0.222 ], "y_axis": [ 0.727, 0.009, -0.687 ], "z_axis": [ 0.650, 0.314, 0.692 ], "quaternion": [ 0.693, -0.361, 0.154, -0.605 ] } }, { "index": 523, "index_chain": 523, "chain_name": "A", "nt_resnum": 525, "nt_name": "A", "nt_code": "A", "nt_id": "///A/525", "linked_nts": [ "///A/524", "///A/526" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-pair-contact,junction-loop,cap-donor,phosphate", "alpha": -67.989, "beta": -167.998, "gamma": 54.623, "delta": 148.053, "epsilon": -164.635, "zeta": -86.970, "epsilon_zeta": -77.665, "bb_type": "BI", "chi": -103.723, "glyco_bond": "anti", "C5prime_xyz": [ -1.766, 8.063, -1.965 ], "P_xyz": [ 0.754, 8.765, -1.700 ], "form": ".", "ssZp": 2.046, "Dp": 2.142, "splay_angle": 47.239, "splay_distance": 8.168, "splay_ratio": 0.402, "d22": null, "d64": null, "eta": 164.367, "theta": -88.520, "eta_prime": -158.189, "theta_prime": -113.112, "eta_base": -109.135, "theta_base": -95.266, "v0": -17.329, "v1": 32.319, "v2": -34.094, "v3": 24.898, "v4": -4.929, "amplitude": 34.697, "phase_angle": 169.303, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.836, "filter_rmsd": 0.042, "frame": { "rmsd": 0.013, "origin": [ 119.332, 187.937, 214.326 ], "x_axis": [ 0.301, -0.691, -0.657 ], "y_axis": [ 0.681, 0.638, -0.359 ], "z_axis": [ 0.667, -0.339, 0.663 ], "quaternion": [ 0.806, -0.006, 0.411, -0.426 ] } }, { "index": 524, "index_chain": 524, "chain_name": "A", "nt_resnum": 526, "nt_name": "A", "nt_code": "A", "nt_id": "///A/526", "linked_nts": [ "///A/525", "///A/527" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,junction-loop,cap-acceptor", "alpha": 168.522, "beta": 168.108, "gamma": -169.374, "delta": 151.884, "epsilon": -70.083, "zeta": 133.434, "epsilon_zeta": 156.483, "bb_type": "BII", "chi": -114.457, "glyco_bond": "anti", "C5prime_xyz": [ -2.508, 8.386, -1.390 ], "P_xyz": [ -1.794, 9.769, -3.506 ], "form": "Z", "ssZp": 0.126, "Dp": 0.499, "splay_angle": 22.856, "splay_distance": 3.910, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": -121.168, "theta": 105.790, "eta_prime": -117.680, "theta_prime": 99.499, "eta_base": -103.700, "theta_base": 56.935, "v0": -24.746, "v1": 40.555, "v2": -39.841, "v3": 26.608, "v4": -1.424, "amplitude": 41.641, "phase_angle": 163.094, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.011, "origin": [ 126.801, 185.497, 216.557 ], "x_axis": [ 0.500, -0.140, -0.854 ], "y_axis": [ 0.200, 0.979, -0.044 ], "z_axis": [ 0.842, -0.149, 0.518 ], "quaternion": [ 0.866, 0.030, 0.490, -0.098 ] } }, { "index": 525, "index_chain": 525, "chain_name": "A", "nt_resnum": 527, "nt_name": "A", "nt_code": "A", "nt_id": "///A/527", "linked_nts": [ "///A/526", "///A/528" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate", "alpha": -71.976, "beta": 156.055, "gamma": -63.199, "delta": 86.826, "epsilon": -173.235, "zeta": 93.289, "epsilon_zeta": 93.476, "bb_type": "--", "chi": 178.959, "glyco_bond": "anti", "C5prime_xyz": [ -1.100, 8.141, 1.763 ], "P_xyz": [ -0.151, 9.231, 3.941 ], "form": ".", "ssZp": 4.370, "Dp": 4.467, "splay_angle": 54.059, "splay_distance": 9.139, "splay_ratio": 0.473, "d22": null, "d64": null, "eta": 104.322, "theta": -59.462, "eta_prime": 83.596, "theta_prime": -82.894, "eta_base": 59.075, "theta_base": -80.509, "v0": 8.513, "v1": -27.610, "v2": 35.092, "v3": -31.128, "v4": 14.373, "amplitude": 35.224, "phase_angle": 4.963, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "0k", "suiteness": 0.014, "filter_rmsd": 0.042, "frame": { "rmsd": 0.015, "origin": [ 123.395, 186.298, 214.811 ], "x_axis": [ 0.374, 0.592, -0.714 ], "y_axis": [ -0.193, 0.803, 0.564 ], "z_axis": [ 0.907, -0.074, 0.414 ], "quaternion": [ 0.805, 0.198, 0.503, 0.244 ] } }, { "index": 526, "index_chain": 526, "chain_name": "A", "nt_resnum": 528, "nt_name": "G", "nt_code": "G", "nt_id": "///A/528", "linked_nts": [ "///A/527", "///A/529" ], "nt_type": "RNA", "dbn": "(", "summary": "turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop,cap-donor,phosphate", "alpha": -94.315, "beta": -82.743, "gamma": -64.289, "delta": 140.223, "epsilon": -156.944, "zeta": 152.044, "epsilon_zeta": 51.011, "bb_type": "--", "chi": -89.245, "glyco_bond": "anti", "C5prime_xyz": [ -2.952, 7.947, -2.389 ], "P_xyz": [ -5.030, 9.373, -3.127 ], "form": ".", "ssZp": 2.291, "Dp": 2.297, "splay_angle": 77.568, "splay_distance": 12.121, "splay_ratio": 0.627, "d22": null, "d64": null, "eta": 167.452, "theta": 51.948, "eta_prime": -160.727, "theta_prime": 83.003, "eta_base": -139.019, "theta_base": 116.522, "v0": -29.546, "v1": 40.112, "v2": -34.478, "v3": 18.406, "v4": 6.796, "amplitude": 39.300, "phase_angle": 151.319, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.021, "frame": { "rmsd": 0.021, "origin": [ 132.489, 187.210, 214.850 ], "x_axis": [ 0.590, 0.795, -0.143 ], "y_axis": [ -0.255, 0.352, 0.901 ], "z_axis": [ 0.766, -0.495, 0.410 ], "quaternion": [ 0.767, 0.455, 0.297, 0.342 ] } }, { "index": 527, "index_chain": 527, "chain_name": "A", "nt_resnum": 529, "nt_name": "C", "nt_code": "C", "nt_id": "///A/529", "linked_nts": [ "///A/528", "///A/530" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart", "alpha": -65.806, "beta": 164.811, "gamma": 54.776, "delta": 82.861, "epsilon": -142.855, "zeta": 175.014, "epsilon_zeta": 42.131, "bb_type": "--", "chi": -167.673, "glyco_bond": "anti", "C5prime_xyz": [ -1.613, 8.809, 0.914 ], "P_xyz": [ 0.898, 9.317, 1.429 ], "form": ".", "ssZp": 4.332, "Dp": 4.445, "splay_angle": 104.770, "splay_distance": 14.532, "splay_ratio": 0.792, "d22": null, "d64": null, "eta": -161.519, "theta": 99.063, "eta_prime": -177.429, "theta_prime": 109.116, "eta_base": -177.415, "theta_base": 135.633, "v0": -4.542, "v1": -17.261, "v2": 31.125, "v3": -34.646, "v4": 24.726, "amplitude": 34.620, "phase_angle": 25.967, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "#a", "suiteness": 0.601, "filter_rmsd": 0.063, "frame": { "rmsd": 0.007, "origin": [ 130.405, 176.746, 220.604 ], "x_axis": [ 0.806, 0.375, -0.459 ], "y_axis": [ -0.263, 0.920, 0.289 ], "z_axis": [ 0.531, -0.112, 0.840 ], "quaternion": [ 0.944, 0.106, 0.262, 0.169 ] } }, { "index": 528, "index_chain": 528, "chain_name": "A", "nt_resnum": 530, "nt_name": "A", "nt_code": "A", "nt_id": "///A/530", "linked_nts": [ "///A/529", "///A/531" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor,cap-acceptor,phosphate,splayed-apart", "alpha": -86.825, "beta": 160.136, "gamma": 54.884, "delta": 79.982, "epsilon": -136.889, "zeta": -43.002, "epsilon_zeta": -93.887, "bb_type": "BI", "chi": 179.278, "glyco_bond": "anti", "C5prime_xyz": [ -1.676, 8.421, 1.670 ], "P_xyz": [ 0.856, 8.837, 2.159 ], "form": ".", "ssZp": 4.690, "Dp": 4.688, "splay_angle": 44.205, "splay_distance": 6.531, "splay_ratio": 0.377, "d22": null, "d64": null, "eta": 177.546, "theta": -107.530, "eta_prime": 167.709, "theta_prime": -104.366, "eta_base": 147.306, "theta_base": -47.551, "v0": 0.563, "v1": -23.418, "v2": 36.043, "v3": -36.711, "v4": 22.830, "amplitude": 37.850, "phase_angle": 17.774, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.677, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 120.036, 177.538, 230.755 ], "x_axis": [ 0.180, -0.644, -0.744 ], "y_axis": [ 0.690, 0.621, -0.371 ], "z_axis": [ 0.701, -0.447, 0.556 ], "quaternion": [ 0.768, 0.025, 0.470, -0.434 ] } }, { "index": 529, "index_chain": 529, "chain_name": "A", "nt_resnum": 531, "nt_name": "C", "nt_code": "C", "nt_id": "///A/531", "linked_nts": [ "///A/530", "///A/532" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop,A-minor,cap-donor", "alpha": -78.529, "beta": 176.165, "gamma": 53.259, "delta": 81.745, "epsilon": -152.812, "zeta": -74.511, "epsilon_zeta": -78.301, "bb_type": "BI", "chi": -173.462, "glyco_bond": "anti", "C5prime_xyz": [ -1.070, 8.465, 1.340 ], "P_xyz": [ 1.505, 8.507, 1.840 ], "form": "A", "ssZp": 4.674, "Dp": 4.658, "splay_angle": 27.701, "splay_distance": 4.161, "splay_ratio": 0.241, "d22": 4.700, "d64": 4.784, "eta": 149.769, "theta": -149.689, "eta_prime": -175.355, "theta_prime": -147.521, "eta_base": -83.622, "theta_base": -127.945, "v0": 5.696, "v1": -27.259, "v2": 37.310, "v3": -35.018, "v4": 18.479, "amplitude": 37.902, "phase_angle": 10.143, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.433, "filter_rmsd": 0.063, "frame": { "rmsd": 0.007, "origin": [ 125.400, 175.013, 228.016 ], "x_axis": [ 0.655, 0.542, -0.527 ], "y_axis": [ -0.101, 0.754, 0.650 ], "z_axis": [ 0.749, -0.372, 0.548 ], "quaternion": [ 0.860, 0.297, 0.371, 0.187 ] } }, { "index": 530, "index_chain": 530, "chain_name": "A", "nt_resnum": 532, "nt_name": "C", "nt_code": "C", "nt_id": "///A/532", "linked_nts": [ "///A/531", "///A/533" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -68.238, "beta": -175.744, "gamma": 53.076, "delta": 82.201, "epsilon": -152.642, "zeta": -67.159, "epsilon_zeta": -85.482, "bb_type": "BI", "chi": -175.254, "glyco_bond": "anti", "C5prime_xyz": [ -1.123, 8.449, 1.433 ], "P_xyz": [ 1.375, 8.482, 2.214 ], "form": "A", "ssZp": 4.661, "Dp": 4.651, "splay_angle": 24.299, "splay_distance": 3.776, "splay_ratio": 0.215, "d22": 4.525, "d64": 4.587, "eta": 171.928, "theta": -142.933, "eta_prime": -179.344, "theta_prime": -140.410, "eta_base": -147.769, "theta_base": -118.489, "v0": 5.307, "v1": -26.905, "v2": 37.131, "v3": -35.036, "v4": 18.757, "amplitude": 37.787, "phase_angle": 10.694, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.936, "filter_rmsd": 0.064, "frame": { "rmsd": 0.006, "origin": [ 128.298, 172.115, 228.735 ], "x_axis": [ 0.356, 0.905, -0.231 ], "y_axis": [ -0.502, 0.394, 0.770 ], "z_axis": [ 0.788, -0.158, 0.595 ], "quaternion": [ 0.766, 0.303, 0.333, 0.460 ] } }, { "index": 531, "index_chain": 531, "chain_name": "A", "nt_resnum": 533, "nt_name": "C", "nt_code": "C", "nt_id": "///A/533", "linked_nts": [ "///A/532", "///A/534" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -74.540, "beta": -171.135, "gamma": 52.277, "delta": 81.444, "epsilon": -156.686, "zeta": -71.419, "epsilon_zeta": -85.267, "bb_type": "BI", "chi": -168.009, "glyco_bond": "anti", "C5prime_xyz": [ -1.270, 8.631, 0.998 ], "P_xyz": [ 1.223, 8.925, 1.740 ], "form": "A", "ssZp": 4.570, "Dp": 4.602, "splay_angle": 23.938, "splay_distance": 3.846, "splay_ratio": 0.213, "d22": 4.678, "d64": 4.905, "eta": 166.820, "theta": -151.269, "eta_prime": 178.697, "theta_prime": -149.333, "eta_base": -145.065, "theta_base": -136.149, "v0": 3.390, "v1": -25.641, "v2": 36.893, "v3": -35.918, "v4": 20.511, "amplitude": 37.951, "phase_angle": 13.566, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.843, "filter_rmsd": 0.059, "frame": { "rmsd": 0.008, "origin": [ 131.972, 171.272, 228.939 ], "x_axis": [ -0.099, 0.985, 0.143 ], "y_axis": [ -0.618, -0.173, 0.767 ], "z_axis": [ 0.780, -0.012, 0.626 ], "quaternion": [ 0.582, 0.335, 0.274, 0.689 ] } }, { "index": 532, "index_chain": 532, "chain_name": "A", "nt_resnum": 534, "nt_name": "C", "nt_code": "C", "nt_id": "///A/534", "linked_nts": [ "///A/533", "///A/535" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop", "alpha": -67.976, "beta": -175.265, "gamma": 50.202, "delta": 79.586, "epsilon": -128.863, "zeta": -72.837, "epsilon_zeta": -56.026, "bb_type": "BI", "chi": -163.652, "glyco_bond": "anti", "C5prime_xyz": [ -1.409, 8.779, 0.715 ], "P_xyz": [ 1.071, 9.318, 1.352 ], "form": ".", "ssZp": 4.428, "Dp": 4.703, "splay_angle": 25.363, "splay_distance": 4.045, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 174.201, "theta": -134.339, "eta_prime": 179.789, "theta_prime": -129.851, "eta_base": -160.118, "theta_base": -85.572, "v0": 0.616, "v1": -23.617, "v2": 36.394, "v3": -37.026, "v4": 22.932, "amplitude": 38.201, "phase_angle": 17.690, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.903, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 135.816, 171.387, 229.019 ], "x_axis": [ -0.487, 0.801, 0.348 ], "y_axis": [ -0.484, -0.579, 0.656 ], "z_axis": [ 0.727, 0.151, 0.669 ], "quaternion": [ 0.388, 0.325, 0.244, 0.827 ] } }, { "index": 533, "index_chain": 533, "chain_name": "A", "nt_resnum": 535, "nt_name": "G", "nt_code": "G", "nt_id": "///A/535", "linked_nts": [ "///A/534", "///A/536" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-acceptor", "alpha": -72.445, "beta": 154.306, "gamma": 69.799, "delta": 79.380, "epsilon": -130.982, "zeta": -51.358, "epsilon_zeta": -79.624, "bb_type": "BI", "chi": -169.505, "glyco_bond": "anti", "C5prime_xyz": [ -1.605, 8.664, 1.026 ], "P_xyz": [ 0.875, 9.252, 0.458 ], "form": ".", "ssZp": 4.629, "Dp": 4.754, "splay_angle": 84.338, "splay_distance": 11.702, "splay_ratio": 0.671, "d22": null, "d64": null, "eta": 160.246, "theta": -101.359, "eta_prime": -178.755, "theta_prime": -153.889, "eta_base": -117.604, "theta_base": 147.253, "v0": 1.389, "v1": -24.682, "v2": 37.289, "v3": -37.488, "v4": 22.774, "amplitude": 38.909, "phase_angle": 16.590, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.438, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 136.673, 174.003, 231.983 ], "x_axis": [ -0.801, 0.169, 0.574 ], "y_axis": [ 0.048, -0.938, 0.342 ], "z_axis": [ 0.597, 0.302, 0.744 ], "quaternion": [ 0.033, 0.314, 0.173, 0.933 ] } }, { "index": 534, "index_chain": 534, "chain_name": "A", "nt_resnum": 536, "nt_name": "G", "nt_code": "G", "nt_id": "///A/536", "linked_nts": [ "///A/535", "///A/537" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": 174.904, "beta": 131.680, "gamma": 46.656, "delta": 85.901, "epsilon": -150.648, "zeta": -59.344, "epsilon_zeta": -91.305, "bb_type": "BI", "chi": -157.952, "glyco_bond": "anti", "C5prime_xyz": [ -1.414, 8.781, 0.458 ], "P_xyz": [ 1.196, 8.555, 0.405 ], "form": ".", "ssZp": 4.182, "Dp": 4.419, "splay_angle": 24.789, "splay_distance": 3.928, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 3.824, "theta": -120.537, "eta_prime": 42.428, "theta_prime": -126.489, "eta_base": 23.834, "theta_base": -76.991, "v0": -0.482, "v1": -19.538, "v2": 30.898, "v3": -32.092, "v4": 20.581, "amplitude": 32.772, "phase_angle": 19.470, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.536, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 148.120, 171.742, 231.094 ], "x_axis": [ 0.024, -0.938, -0.345 ], "y_axis": [ -0.686, -0.267, 0.677 ], "z_axis": [ -0.727, 0.221, -0.650 ], "quaternion": [ 0.164, 0.697, -0.583, -0.385 ] } }, { "index": 535, "index_chain": 535, "chain_name": "A", "nt_resnum": 537, "nt_name": "A", "nt_code": "A", "nt_id": "///A/537", "linked_nts": [ "///A/536", "///A/538" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate", "alpha": -77.222, "beta": 174.576, "gamma": 54.464, "delta": 74.841, "epsilon": 107.564, "zeta": 63.711, "epsilon_zeta": 43.853, "bb_type": "--", "chi": -144.037, "glyco_bond": "anti", "C5prime_xyz": [ -1.120, 8.608, -0.448 ], "P_xyz": [ 1.445, 8.763, -0.928 ], "form": ".", "ssZp": 3.438, "Dp": 3.766, "splay_angle": 30.622, "splay_distance": 4.894, "splay_ratio": 0.265, "d22": null, "d64": null, "eta": 167.544, "theta": -118.605, "eta_prime": -162.419, "theta_prime": -129.184, "eta_base": -89.622, "theta_base": -86.099, "v0": 6.926, "v1": -29.501, "v2": 39.813, "v3": -36.876, "v4": 18.943, "amplitude": 40.308, "phase_angle": 8.993, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.741, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 145.393, 169.814, 229.027 ], "x_axis": [ -0.567, -0.781, 0.263 ], "y_axis": [ -0.602, 0.611, 0.515 ], "z_axis": [ -0.563, 0.133, -0.816 ], "quaternion": [ -0.239, -0.399, 0.865, 0.187 ] } }, { "index": 536, "index_chain": 536, "chain_name": "A", "nt_resnum": 538, "nt_name": "A", "nt_code": "A", "nt_id": "///A/538", "linked_nts": [ "///A/537", "///A/539" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate", "alpha": -164.864, "beta": 146.137, "gamma": 93.382, "delta": 80.720, "epsilon": -125.583, "zeta": -54.523, "epsilon_zeta": -71.060, "bb_type": "--", "chi": -158.915, "glyco_bond": "anti", "C5prime_xyz": [ -1.098, 8.593, 0.436 ], "P_xyz": [ 0.872, 8.960, -1.233 ], "form": ".", "ssZp": 4.311, "Dp": 4.813, "splay_angle": 37.572, "splay_distance": 5.919, "splay_ratio": 0.323, "d22": null, "d64": null, "eta": 149.718, "theta": -114.331, "eta_prime": -179.382, "theta_prime": -114.462, "eta_base": -113.830, "theta_base": -70.319, "v0": 6.656, "v1": -28.685, "v2": 38.791, "v3": -35.956, "v4": 18.513, "amplitude": 39.286, "phase_angle": 9.103, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 140.880, 169.112, 227.271 ], "x_axis": [ -0.859, -0.044, 0.510 ], "y_axis": [ -0.010, 0.998, 0.070 ], "z_axis": [ -0.512, 0.055, -0.857 ], "quaternion": [ -0.265, -0.014, 0.964, 0.032 ] } }, { "index": 537, "index_chain": 537, "chain_name": "A", "nt_resnum": 539, "nt_name": "G", "nt_code": "G", "nt_id": "///A/539", "linked_nts": [ "///A/538", "///A/540" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop", "alpha": -59.724, "beta": 166.197, "gamma": 58.011, "delta": 79.483, "epsilon": -167.516, "zeta": -78.148, "epsilon_zeta": -89.368, "bb_type": "BI", "chi": -159.482, "glyco_bond": "anti", "C5prime_xyz": [ -1.393, 8.847, 0.471 ], "P_xyz": [ 1.181, 9.320, 0.388 ], "form": ".", "ssZp": 4.350, "Dp": 4.460, "splay_angle": 22.299, "splay_distance": 3.966, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 160.069, "theta": -130.858, "eta_prime": -164.473, "theta_prime": -142.374, "eta_base": -89.150, "theta_base": -128.312, "v0": -0.856, "v1": -22.045, "v2": 35.317, "v3": -36.771, "v4": 23.737, "amplitude": 37.556, "phase_angle": 19.887, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.600, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 135.491, 171.079, 228.729 ], "x_axis": [ -0.231, 0.843, 0.487 ], "y_axis": [ 0.568, 0.523, -0.636 ], "z_axis": [ -0.790, 0.130, -0.599 ], "quaternion": [ -0.416, 0.460, 0.767, -0.165 ] } }, { "index": 538, "index_chain": 538, "chain_name": "A", "nt_resnum": 540, "nt_name": "G", "nt_code": "G", "nt_id": "///A/540", "linked_nts": [ "///A/539", "///A/541" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": 142.092, "beta": -152.281, "gamma": -171.092, "delta": 82.171, "epsilon": -123.826, "zeta": -85.480, "epsilon_zeta": -38.345, "bb_type": "--", "chi": 173.710, "glyco_bond": "anti", "C5prime_xyz": [ -1.514, 8.282, 2.001 ], "P_xyz": [ 0.070, 10.231, 1.303 ], "form": "A", "ssZp": 4.665, "Dp": 4.686, "splay_angle": 24.772, "splay_distance": 4.036, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 173.743, "theta": -164.547, "eta_prime": -174.882, "theta_prime": -157.574, "eta_base": -139.815, "theta_base": -129.341, "v0": 1.731, "v1": -23.372, "v2": 34.993, "v3": -34.988, "v4": 20.998, "amplitude": 36.403, "phase_angle": 16.001, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.718, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 131.526, 171.036, 228.775 ], "x_axis": [ 0.066, 0.972, 0.225 ], "y_axis": [ 0.616, 0.138, -0.775 ], "z_axis": [ -0.785, 0.190, -0.590 ], "quaternion": [ -0.392, 0.616, 0.645, -0.227 ] } }, { "index": 539, "index_chain": 539, "chain_name": "A", "nt_resnum": 541, "nt_name": "G", "nt_code": "G", "nt_id": "///A/541", "linked_nts": [ "///A/540", "///A/542" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -43.266, "beta": 166.105, "gamma": 36.298, "delta": 79.686, "epsilon": -163.950, "zeta": -76.531, "epsilon_zeta": -87.419, "bb_type": "BI", "chi": -165.855, "glyco_bond": "anti", "C5prime_xyz": [ -1.706, 8.791, 0.835 ], "P_xyz": [ 0.678, 9.467, 1.636 ], "form": ".", "ssZp": 4.403, "Dp": 4.435, "splay_angle": 23.291, "splay_distance": 4.113, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 163.364, "theta": -130.222, "eta_prime": 179.900, "theta_prime": -138.847, "eta_base": -140.453, "theta_base": -114.980, "v0": -2.892, "v1": -19.999, "v2": 33.999, "v3": -36.639, "v4": 24.960, "amplitude": 36.944, "phase_angle": 23.035, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.262, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 127.658, 172.173, 228.584 ], "x_axis": [ 0.495, 0.853, -0.167 ], "y_axis": [ 0.493, -0.434, -0.754 ], "z_axis": [ -0.715, 0.290, -0.636 ], "quaternion": [ -0.326, 0.801, 0.420, -0.276 ] } }, { "index": 540, "index_chain": 540, "chain_name": "A", "nt_resnum": 542, "nt_name": "G", "nt_code": "G", "nt_id": "///A/542", "linked_nts": [ "///A/541", "///A/543" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop,A-minor", "alpha": 144.281, "beta": -157.977, "gamma": -176.424, "delta": 80.986, "epsilon": -124.190, "zeta": -70.147, "epsilon_zeta": -54.042, "bb_type": "--", "chi": 174.112, "glyco_bond": "anti", "C5prime_xyz": [ -1.441, 8.201, 2.003 ], "P_xyz": [ 0.096, 10.197, 1.286 ], "form": ".", "ssZp": 4.801, "Dp": 4.781, "splay_angle": 30.987, "splay_distance": 4.695, "splay_ratio": 0.270, "d22": null, "d64": null, "eta": 164.647, "theta": -151.020, "eta_prime": 178.235, "theta_prime": -143.783, "eta_base": -137.208, "theta_base": -92.108, "v0": 5.137, "v1": -27.074, "v2": 37.643, "v3": -35.673, "v4": 19.220, "amplitude": 38.358, "phase_angle": 11.078, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.872, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 124.952, 175.211, 227.980 ], "x_axis": [ 0.663, 0.534, -0.525 ], "y_axis": [ 0.193, -0.799, -0.569 ], "z_axis": [ -0.723, 0.276, -0.633 ], "quaternion": [ -0.240, 0.880, 0.207, -0.355 ] } }, { "index": 541, "index_chain": 541, "chain_name": "A", "nt_resnum": 543, "nt_name": "A", "nt_code": "A", "nt_id": "///A/543", "linked_nts": [ "///A/542", "///A/544" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": -56.568, "beta": 167.501, "gamma": 50.867, "delta": 81.419, "epsilon": -161.977, "zeta": -80.435, "epsilon_zeta": -81.543, "bb_type": "BI", "chi": -176.053, "glyco_bond": "anti", "C5prime_xyz": [ -1.491, 8.461, 1.462 ], "P_xyz": [ 1.025, 8.736, 2.114 ], "form": "A", "ssZp": 4.499, "Dp": 4.517, "splay_angle": 25.321, "splay_distance": 3.952, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 160.352, "theta": -126.045, "eta_prime": -173.906, "theta_prime": -130.974, "eta_base": -101.091, "theta_base": -92.384, "v0": 2.055, "v1": -23.918, "v2": 35.474, "v3": -35.315, "v4": 20.999, "amplitude": 36.819, "phase_angle": 15.531, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.646, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 124.622, 177.959, 224.187 ], "x_axis": [ 0.618, -0.375, -0.691 ], "y_axis": [ -0.386, -0.910, 0.148 ], "z_axis": [ -0.685, 0.175, -0.708 ], "quaternion": [ -0.007, 0.900, -0.211, -0.382 ] } }, { "index": 542, "index_chain": 542, "chain_name": "A", "nt_resnum": 544, "nt_name": "G", "nt_code": "G", "nt_id": "///A/544", "linked_nts": [ "///A/543", "///A/545" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 172.401, "beta": -143.173, "gamma": 148.308, "delta": 81.469, "epsilon": -133.428, "zeta": -81.039, "epsilon_zeta": -52.389, "bb_type": "BI", "chi": 172.282, "glyco_bond": "anti", "C5prime_xyz": [ -1.621, 8.205, 2.080 ], "P_xyz": [ 0.772, 9.079, 1.525 ], "form": "A", "ssZp": 4.611, "Dp": 4.681, "splay_angle": 23.036, "splay_distance": 3.653, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 156.490, "theta": -146.255, "eta_prime": 179.705, "theta_prime": -148.494, "eta_base": -116.455, "theta_base": -129.649, "v0": 3.022, "v1": -24.704, "v2": 35.815, "v3": -35.101, "v4": 20.223, "amplitude": 36.920, "phase_angle": 14.057, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.016, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 124.068, 178.762, 220.358 ], "x_axis": [ 0.185, -0.906, -0.380 ], "y_axis": [ -0.690, -0.395, 0.607 ], "z_axis": [ -0.700, 0.150, -0.698 ], "quaternion": [ 0.151, 0.755, -0.529, -0.358 ] } }, { "index": 543, "index_chain": 543, "chain_name": "A", "nt_resnum": 545, "nt_name": "U", "nt_code": "U", "nt_id": "///A/545", "linked_nts": [ "///A/544", "///A/546" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": -55.374, "beta": 179.066, "gamma": 41.943, "delta": 82.152, "epsilon": -126.571, "zeta": -70.323, "epsilon_zeta": -56.248, "bb_type": "--", "chi": -158.383, "glyco_bond": "anti", "C5prime_xyz": [ -1.367, 8.701, 0.453 ], "P_xyz": [ 1.109, 9.192, 1.105 ], "form": ".", "ssZp": 4.231, "Dp": 4.688, "splay_angle": 27.411, "splay_distance": 4.468, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 173.821, "theta": -127.543, "eta_prime": -177.275, "theta_prime": -122.051, "eta_base": -147.066, "theta_base": -81.193, "v0": 2.190, "v1": -24.035, "v2": 35.523, "v3": -35.245, "v4": 20.865, "amplitude": 36.826, "phase_angle": 15.288, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.656, "filter_rmsd": 0.100, "frame": { "rmsd": 0.008, "origin": [ 123.690, 179.740, 216.859 ], "x_axis": [ -0.239, -0.970, 0.044 ], "y_axis": [ -0.719, 0.208, 0.663 ], "z_axis": [ -0.652, 0.127, -0.747 ], "quaternion": [ -0.235, -0.570, 0.741, 0.267 ] } }, { "index": 544, "index_chain": 544, "chain_name": "A", "nt_resnum": 546, "nt_name": "G", "nt_code": "G", "nt_id": "///A/546", "linked_nts": [ "///A/545", "///A/547" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor", "alpha": -63.914, "beta": 149.601, "gamma": 69.871, "delta": 75.426, "epsilon": -111.206, "zeta": -98.997, "epsilon_zeta": -12.210, "bb_type": "--", "chi": -164.432, "glyco_bond": "anti", "C5prime_xyz": [ -1.798, 8.795, 0.692 ], "P_xyz": [ 0.518, 9.546, -0.216 ], "form": ".", "ssZp": 4.335, "Dp": 4.783, "splay_angle": 77.739, "splay_distance": 11.227, "splay_ratio": 0.628, "d22": null, "d64": null, "eta": 167.831, "theta": -108.580, "eta_prime": -170.121, "theta_prime": -152.646, "eta_base": -113.524, "theta_base": 148.274, "v0": -1.444, "v1": -23.552, "v2": 38.221, "v3": -40.076, "v4": 26.171, "amplitude": 40.823, "phase_angle": 20.567, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.375, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 120.696, 177.125, 214.819 ], "x_axis": [ -0.617, -0.603, 0.506 ], "y_axis": [ -0.479, 0.797, 0.367 ], "z_axis": [ -0.625, -0.016, -0.781 ], "quaternion": [ -0.316, -0.303, 0.894, 0.098 ] } }, { "index": 545, "index_chain": 545, "chain_name": "A", "nt_resnum": 547, "nt_name": "A", "nt_code": "A", "nt_id": "///A/547", "linked_nts": [ "///A/546", "///A/548" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": 141.446, "beta": -162.155, "gamma": 57.791, "delta": 88.487, "epsilon": -173.696, "zeta": -77.499, "epsilon_zeta": -96.198, "bb_type": "BI", "chi": -153.725, "glyco_bond": "anti", "C5prime_xyz": [ -0.952, 8.546, 0.251 ], "P_xyz": [ 1.603, 8.518, 0.867 ], "form": ".", "ssZp": 4.156, "Dp": 4.360, "splay_angle": 27.294, "splay_distance": 4.203, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 10.864, "theta": -124.499, "eta_prime": 42.623, "theta_prime": -126.407, "eta_base": 25.956, "theta_base": -87.752, "v0": 6.553, "v1": -24.654, "v2": 32.365, "v3": -29.528, "v4": 14.562, "amplitude": 32.635, "phase_angle": 7.370, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.058, "filter_rmsd": 0.040, "frame": { "rmsd": 0.011, "origin": [ 121.086, 184.394, 206.271 ], "x_axis": [ 0.269, 0.868, 0.417 ], "y_axis": [ -0.745, -0.087, 0.661 ], "z_axis": [ 0.610, -0.488, 0.624 ], "quaternion": [ 0.672, 0.428, 0.072, 0.600 ] } }, { "index": 546, "index_chain": 546, "chain_name": "A", "nt_resnum": 548, "nt_name": "A", "nt_code": "A", "nt_id": "///A/548", "linked_nts": [ "///A/547", "///A/549" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-pair-contact,internal-loop,cap-donor,phosphate", "alpha": -177.281, "beta": -131.300, "gamma": 129.801, "delta": 80.358, "epsilon": -113.676, "zeta": -74.019, "epsilon_zeta": -39.657, "bb_type": "--", "chi": -162.255, "glyco_bond": "anti", "C5prime_xyz": [ -1.320, 8.648, 0.634 ], "P_xyz": [ 1.007, 8.648, -0.539 ], "form": ".", "ssZp": 4.312, "Dp": 4.787, "splay_angle": 43.585, "splay_distance": 6.856, "splay_ratio": 0.371, "d22": null, "d64": null, "eta": 162.136, "theta": -121.119, "eta_prime": -176.776, "theta_prime": -116.388, "eta_base": -121.361, "theta_base": -110.626, "v0": 2.925, "v1": -25.509, "v2": 37.118, "v3": -36.503, "v4": 21.149, "amplitude": 38.313, "phase_angle": 14.346, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.011, "origin": [ 123.591, 184.277, 209.644 ], "x_axis": [ -0.314, 0.568, 0.761 ], "y_axis": [ -0.650, -0.713, 0.263 ], "z_axis": [ 0.692, -0.412, 0.593 ], "quaternion": [ 0.376, 0.449, -0.046, 0.809 ] } }, { "index": 547, "index_chain": 547, "chain_name": "A", "nt_resnum": 549, "nt_name": "A", "nt_code": "A", "nt_id": "///A/549", "linked_nts": [ "///A/548", "///A/550" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart", "alpha": -54.797, "beta": -139.155, "gamma": 51.185, "delta": 143.848, "epsilon": -125.598, "zeta": 98.674, "epsilon_zeta": 135.728, "bb_type": "--", "chi": -64.928, "glyco_bond": "--", "C5prime_xyz": [ -3.422, 6.701, -3.025 ], "P_xyz": [ -1.572, 8.238, -4.067 ], "form": ".", "ssZp": 0.775, "Dp": 1.561, "splay_angle": 151.720, "splay_distance": 19.285, "splay_ratio": 0.970, "d22": null, "d64": null, "eta": -150.726, "theta": 113.995, "eta_prime": -133.840, "theta_prime": 69.101, "eta_base": -128.755, "theta_base": 81.711, "v0": -23.487, "v1": 36.312, "v2": -34.528, "v3": 21.887, "v4": 0.800, "amplitude": 36.748, "phase_angle": 159.984, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.592, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 126.395, 183.372, 215.835 ], "x_axis": [ -0.699, 0.305, 0.648 ], "y_axis": [ -0.322, -0.942, 0.096 ], "z_axis": [ 0.639, -0.141, 0.756 ], "quaternion": [ 0.170, 0.349, -0.012, 0.921 ] } }, { "index": 548, "index_chain": 548, "chain_name": "A", "nt_resnum": 550, "nt_name": "G", "nt_code": "G", "nt_id": "///A/550", "linked_nts": [ "///A/549", "///A/551" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart", "alpha": 51.099, "beta": -162.815, "gamma": 52.456, "delta": 146.205, "epsilon": -137.309, "zeta": 102.297, "epsilon_zeta": 120.394, "bb_type": "--", "chi": -97.314, "glyco_bond": "anti", "C5prime_xyz": [ -2.310, 7.995, -2.253 ], "P_xyz": [ -0.035, 9.292, -2.219 ], "form": ".", "ssZp": 1.472, "Dp": 1.673, "splay_angle": 144.784, "splay_distance": 19.393, "splay_ratio": 0.953, "d22": null, "d64": null, "eta": -20.874, "theta": 82.374, "eta_prime": -3.273, "theta_prime": 36.707, "eta_base": -15.228, "theta_base": -7.698, "v0": -21.454, "v1": 35.507, "v2": -35.283, "v3": 23.800, "v4": -1.681, "amplitude": 36.736, "phase_angle": 163.833, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.461, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 129.491, 165.985, 208.088 ], "x_axis": [ -0.403, -0.637, 0.657 ], "y_axis": [ -0.401, 0.768, 0.499 ], "z_axis": [ -0.823, -0.063, -0.565 ], "quaternion": [ -0.447, -0.314, 0.827, 0.132 ] } }, { "index": 549, "index_chain": 549, "chain_name": "A", "nt_resnum": 551, "nt_name": "A", "nt_code": "A", "nt_id": "///A/551", "linked_nts": [ "///A/550", "///A/552" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,splayed-apart", "alpha": -65.096, "beta": -158.385, "gamma": -178.584, "delta": 82.687, "epsilon": -127.340, "zeta": -113.688, "epsilon_zeta": -13.652, "bb_type": "--", "chi": -163.474, "glyco_bond": "anti", "C5prime_xyz": [ -1.222, 8.615, 0.733 ], "P_xyz": [ 0.087, 10.195, -0.896 ], "form": ".", "ssZp": 4.462, "Dp": 4.746, "splay_angle": 40.390, "splay_distance": 6.502, "splay_ratio": 0.347, "d22": null, "d64": null, "eta": -4.733, "theta": -158.989, "eta_prime": 14.666, "theta_prime": -147.290, "eta_base": 65.340, "theta_base": -137.459, "v0": 3.983, "v1": -25.569, "v2": 36.172, "v3": -34.861, "v4": 19.468, "amplitude": 37.057, "phase_angle": 12.548, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 124.181, 183.789, 213.650 ], "x_axis": [ -0.735, -0.554, 0.390 ], "y_axis": [ 0.340, -0.799, -0.495 ], "z_axis": [ 0.586, -0.232, 0.776 ], "quaternion": [ -0.246, 0.268, -0.200, 0.910 ] } }, { "index": 550, "index_chain": 550, "chain_name": "A", "nt_resnum": 552, "nt_name": "G", "nt_code": "G", "nt_id": "///A/552", "linked_nts": [ "///A/551", "///A/553" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 59.314, "beta": 149.699, "gamma": -10.359, "delta": 148.079, "epsilon": -142.479, "zeta": 129.367, "epsilon_zeta": 88.154, "bb_type": "--", "chi": -77.507, "glyco_bond": "anti", "C5prime_xyz": [ -2.819, 7.260, -2.845 ], "P_xyz": [ -1.005, 9.053, -3.426 ], "form": ".", "ssZp": 1.263, "Dp": 1.734, "splay_angle": 62.663, "splay_distance": 9.981, "splay_ratio": 0.523, "d22": null, "d64": null, "eta": -153.680, "theta": 107.842, "eta_prime": -136.210, "theta_prime": 111.850, "eta_base": -136.097, "theta_base": 133.780, "v0": -21.032, "v1": 35.531, "v2": -35.657, "v3": 24.407, "v4": -2.328, "amplitude": 36.951, "phase_angle": 164.794, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 126.115, 182.364, 219.692 ], "x_axis": [ -0.683, -0.726, 0.079 ], "y_axis": [ 0.625, -0.636, -0.453 ], "z_axis": [ 0.379, -0.260, 0.888 ], "quaternion": [ -0.377, 0.128, -0.199, 0.895 ] } }, { "index": 551, "index_chain": 551, "chain_name": "A", "nt_resnum": 553, "nt_name": "A", "nt_code": "A", "nt_id": "///A/553", "linked_nts": [ "///A/552", "///A/554" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop,cap-donor,splayed-apart", "alpha": -77.808, "beta": 157.627, "gamma": 59.974, "delta": 147.463, "epsilon": -154.283, "zeta": 146.167, "epsilon_zeta": 59.550, "bb_type": "--", "chi": -132.030, "glyco_bond": "anti", "C5prime_xyz": [ -1.743, 8.632, -0.562 ], "P_xyz": [ 0.807, 8.903, -0.017 ], "form": ".", "ssZp": 1.928, "Dp": 1.950, "splay_angle": 142.547, "splay_distance": 16.863, "splay_ratio": 0.947, "d22": null, "d64": null, "eta": 177.316, "theta": 130.647, "eta_prime": -163.970, "theta_prime": 73.525, "eta_base": -160.684, "theta_base": 178.357, "v0": -20.437, "v1": 34.876, "v2": -35.181, "v3": 24.273, "v4": -2.603, "amplitude": 36.374, "phase_angle": 165.285, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "0b", "suiteness": 0.411, "filter_rmsd": 0.038, "frame": { "rmsd": 0.011, "origin": [ 134.026, 188.448, 219.561 ], "x_axis": [ -0.609, -0.450, 0.653 ], "y_axis": [ 0.222, -0.887, -0.405 ], "z_axis": [ 0.761, -0.102, 0.640 ], "quaternion": [ -0.190, 0.399, -0.143, 0.886 ] } }, { "index": 552, "index_chain": 552, "chain_name": "A", "nt_resnum": 554, "nt_name": "U", "nt_code": "U", "nt_id": "///A/554", "linked_nts": [ "///A/553", "///A/555" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -1.925, "beta": -129.365, "gamma": 70.947, "delta": 149.724, "epsilon": -130.163, "zeta": 57.537, "epsilon_zeta": 172.299, "bb_type": "--", "chi": -63.902, "glyco_bond": "--", "C5prime_xyz": [ -3.039, 6.546, -3.123 ], "P_xyz": [ -0.638, 7.439, -3.677 ], "form": ".", "ssZp": 0.481, "Dp": 1.545, "splay_angle": 98.841, "splay_distance": 15.683, "splay_ratio": 0.760, "d22": 9.522, "d64": 11.064, "eta": -41.726, "theta": 73.358, "eta_prime": -22.733, "theta_prime": 43.553, "eta_base": -136.027, "theta_base": 28.170, "v0": -17.860, "v1": 33.355, "v2": -35.266, "v3": 25.901, "v4": -5.206, "amplitude": 35.866, "phase_angle": 169.504, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.003, "origin": [ 147.503, 186.172, 209.684 ], "x_axis": [ 0.621, -0.139, 0.771 ], "y_axis": [ -0.660, -0.623, 0.419 ], "z_axis": [ 0.422, -0.770, -0.479 ], "quaternion": [ 0.360, 0.825, -0.242, 0.362 ] } }, { "index": 553, "index_chain": 553, "chain_name": "A", "nt_resnum": 555, "nt_name": "C", "nt_code": "C", "nt_id": "///A/555", "linked_nts": [ "///A/554", "///A/556" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop,cap-acceptor,splayed-apart", "alpha": -147.746, "beta": -133.562, "gamma": 10.632, "delta": 143.893, "epsilon": -147.076, "zeta": -158.742, "epsilon_zeta": 11.666, "bb_type": "--", "chi": -78.903, "glyco_bond": "anti", "C5prime_xyz": [ -2.464, 7.421, -2.857 ], "P_xyz": [ -1.227, 9.673, -3.412 ], "form": ".", "ssZp": 1.274, "Dp": 2.015, "splay_angle": 142.284, "splay_distance": 18.738, "splay_ratio": 0.946, "d22": 10.370, "d64": 13.030, "eta": 106.648, "theta": -169.801, "eta_prime": 128.419, "theta_prime": -157.016, "eta_base": 129.886, "theta_base": -119.604, "v0": -21.036, "v1": 34.017, "v2": -33.263, "v3": 21.905, "v4": -0.650, "amplitude": 34.899, "phase_angle": 162.388, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.069, "frame": { "rmsd": 0.011, "origin": [ 132.979, 186.881, 215.560 ], "x_axis": [ 0.697, 0.699, 0.159 ], "y_axis": [ 0.486, -0.298, -0.821 ], "z_axis": [ -0.527, 0.650, -0.548 ], "quaternion": [ -0.461, 0.797, 0.372, -0.115 ] } }, { "index": 554, "index_chain": 554, "chain_name": "A", "nt_resnum": 556, "nt_name": "C", "nt_code": "C", "nt_id": "///A/556", "linked_nts": [ "///A/555", "///A/557" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,A-minor,phosphate,splayed-apart", "alpha": 106.287, "beta": 146.018, "gamma": -29.778, "delta": 86.246, "epsilon": -148.292, "zeta": -59.711, "epsilon_zeta": -88.581, "bb_type": "BI", "chi": -176.297, "glyco_bond": "anti", "C5prime_xyz": [ -1.162, 8.411, 1.515 ], "P_xyz": [ 0.266, 8.718, 3.683 ], "form": "A", "ssZp": 4.558, "Dp": 4.585, "splay_angle": 24.402, "splay_distance": 3.808, "splay_ratio": 0.213, "d22": 4.039, "d64": 3.915, "eta": -105.066, "theta": -141.859, "eta_prime": -123.192, "theta_prime": -130.256, "eta_base": -129.421, "theta_base": -81.435, "v0": 4.340, "v1": -24.219, "v2": 33.725, "v3": -32.181, "v4": 17.596, "amplitude": 34.423, "phase_angle": 11.553, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.007, "origin": [ 134.095, 183.466, 197.169 ], "x_axis": [ 0.920, 0.377, 0.107 ], "y_axis": [ -0.193, 0.199, 0.961 ], "z_axis": [ 0.341, -0.905, 0.256 ], "quaternion": [ 0.771, 0.605, 0.076, 0.185 ] } }, { "index": 555, "index_chain": 555, "chain_name": "A", "nt_resnum": 557, "nt_name": "U", "nt_code": "U", "nt_id": "///A/557", "linked_nts": [ "///A/556", "///A/558" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -74.152, "beta": -179.370, "gamma": 57.953, "delta": 87.445, "epsilon": -144.506, "zeta": -91.698, "epsilon_zeta": -52.808, "bb_type": "BI", "chi": -161.614, "glyco_bond": "anti", "C5prime_xyz": [ -1.399, 8.695, 0.657 ], "P_xyz": [ 1.115, 9.017, 1.315 ], "form": ".", "ssZp": 4.187, "Dp": 4.414, "splay_angle": 36.048, "splay_distance": 5.775, "splay_ratio": 0.309, "d22": null, "d64": null, "eta": 169.900, "theta": -103.248, "eta_prime": -168.897, "theta_prime": -100.248, "eta_base": -113.026, "theta_base": -55.045, "v0": -0.548, "v1": -18.898, "v2": 29.960, "v3": -31.140, "v4": 20.026, "amplitude": 31.801, "phase_angle": 19.590, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.759, "filter_rmsd": 0.104, "frame": { "rmsd": 0.009, "origin": [ 137.025, 181.047, 197.423 ], "x_axis": [ 0.496, 0.464, 0.734 ], "y_axis": [ -0.782, -0.130, 0.610 ], "z_axis": [ 0.378, -0.876, 0.298 ], "quaternion": [ 0.645, 0.576, -0.138, 0.483 ] } }, { "index": 556, "index_chain": 556, "chain_name": "A", "nt_resnum": 558, "nt_name": "G", "nt_code": "G", "nt_id": "///A/558", "linked_nts": [ "///A/557", "///A/559" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": 144.937, "beta": -104.876, "gamma": 164.785, "delta": 84.923, "epsilon": -112.584, "zeta": 179.863, "epsilon_zeta": 67.552, "bb_type": "BII", "chi": -171.111, "glyco_bond": "anti", "C5prime_xyz": [ -2.327, 8.793, 0.979 ], "P_xyz": [ -0.318, 9.342, -0.589 ], "form": ".", "ssZp": 4.058, "Dp": 4.178, "splay_angle": 69.236, "splay_distance": 10.439, "splay_ratio": 0.570, "d22": null, "d64": null, "eta": 169.958, "theta": 127.061, "eta_prime": -153.776, "theta_prime": 130.627, "eta_base": -87.529, "theta_base": 150.487, "v0": -11.629, "v1": -10.157, "v2": 26.539, "v3": -34.004, "v4": 28.838, "amplitude": 33.779, "phase_angle": 38.216, "puckering": "C4'-exo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 138.498, 179.799, 202.866 ], "x_axis": [ -0.358, 0.177, 0.917 ], "y_axis": [ -0.786, -0.587, -0.194 ], "z_axis": [ 0.504, -0.790, 0.349 ], "quaternion": [ 0.318, 0.469, -0.325, 0.757 ] } }, { "index": 557, "index_chain": 557, "chain_name": "A", "nt_resnum": 559, "nt_name": "A", "nt_code": "A", "nt_id": "///A/559", "linked_nts": [ "///A/558", "///A/560" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -62.301, "beta": 145.159, "gamma": 41.839, "delta": 82.061, "epsilon": -128.738, "zeta": -83.419, "epsilon_zeta": -45.319, "bb_type": "--", "chi": 172.570, "glyco_bond": "anti", "C5prime_xyz": [ -1.643, 8.242, 2.031 ], "P_xyz": [ 0.843, 8.162, 2.848 ], "form": "A", "ssZp": 4.627, "Dp": 4.650, "splay_angle": 25.327, "splay_distance": 3.943, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": -172.533, "theta": -135.065, "eta_prime": 177.922, "theta_prime": -133.880, "eta_base": 172.974, "theta_base": -107.689, "v0": 0.348, "v1": -21.842, "v2": 33.777, "v3": -34.539, "v4": 21.598, "amplitude": 35.532, "phase_angle": 18.085, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.419, "filter_rmsd": 0.043, "frame": { "rmsd": 0.014, "origin": [ 143.694, 174.396, 195.602 ], "x_axis": [ 0.018, 0.552, 0.833 ], "y_axis": [ -0.984, -0.139, 0.114 ], "z_axis": [ 0.179, -0.822, 0.541 ], "quaternion": [ 0.596, 0.393, -0.275, 0.645 ] } }, { "index": 558, "index_chain": 558, "chain_name": "A", "nt_resnum": 560, "nt_name": "A", "nt_code": "A", "nt_id": "///A/560", "linked_nts": [ "///A/559", "///A/561" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper", "alpha": -60.365, "beta": 159.358, "gamma": 56.383, "delta": 79.200, "epsilon": -136.699, "zeta": -87.003, "epsilon_zeta": -49.696, "bb_type": "BI", "chi": -178.121, "glyco_bond": "anti", "C5prime_xyz": [ -1.701, 8.494, 1.535 ], "P_xyz": [ 0.829, 8.949, 1.937 ], "form": "A", "ssZp": 4.648, "Dp": 4.666, "splay_angle": 24.734, "splay_distance": 3.754, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 165.294, "theta": -149.986, "eta_prime": -178.831, "theta_prime": -148.458, "eta_base": -133.651, "theta_base": -119.159, "v0": 0.173, "v1": -23.396, "v2": 36.456, "v3": -37.381, "v4": 23.464, "amplitude": 38.416, "phase_angle": 18.378, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.688, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 146.098, 172.171, 197.799 ], "x_axis": [ -0.559, 0.362, 0.746 ], "y_axis": [ -0.822, -0.365, -0.438 ], "z_axis": [ 0.113, -0.858, 0.501 ], "quaternion": [ 0.380, 0.276, -0.416, 0.779 ] } }, { "index": 559, "index_chain": 559, "chain_name": "A", "nt_resnum": 561, "nt_name": "A", "nt_code": "A", "nt_id": "///A/561", "linked_nts": [ "///A/560", "///A/562" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper", "alpha": -61.468, "beta": 155.682, "gamma": 62.466, "delta": 83.752, "epsilon": -115.344, "zeta": -63.038, "epsilon_zeta": -52.306, "bb_type": "--", "chi": 179.096, "glyco_bond": "anti", "C5prime_xyz": [ -1.558, 8.347, 1.709 ], "P_xyz": [ 1.026, 8.615, 1.920 ], "form": ".", "ssZp": 4.655, "Dp": 4.680, "splay_angle": 43.480, "splay_distance": 6.717, "splay_ratio": 0.371, "d22": null, "d64": null, "eta": 176.184, "theta": -105.435, "eta_prime": -173.456, "theta_prime": -102.259, "eta_base": -132.702, "theta_base": -61.328, "v0": 1.448, "v1": -22.884, "v2": 34.360, "v3": -34.512, "v4": 20.855, "amplitude": 35.810, "phase_angle": 16.356, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.647, "filter_rmsd": 0.043, "frame": { "rmsd": 0.015, "origin": [ 147.416, 169.992, 200.557 ], "x_axis": [ -0.931, 0.137, 0.338 ], "y_axis": [ -0.363, -0.444, -0.819 ], "z_axis": [ 0.038, -0.886, 0.463 ], "quaternion": [ 0.148, 0.112, -0.506, 0.842 ] } }, { "index": 560, "index_chain": 560, "chain_name": "A", "nt_resnum": 562, "nt_name": "C", "nt_code": "C", "nt_id": "///A/562", "linked_nts": [ "///A/561", "///A/563" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -60.005, "beta": 172.550, "gamma": 51.558, "delta": 81.433, "epsilon": -150.154, "zeta": -72.898, "epsilon_zeta": -77.255, "bb_type": "BI", "chi": -159.727, "glyco_bond": "anti", "C5prime_xyz": [ -1.355, 8.753, 0.511 ], "P_xyz": [ 1.214, 9.136, 0.746 ], "form": "A", "ssZp": 4.378, "Dp": 4.596, "splay_angle": 25.695, "splay_distance": 4.114, "splay_ratio": 0.224, "d22": 4.587, "d64": 4.805, "eta": 158.852, "theta": -144.427, "eta_prime": -170.204, "theta_prime": -142.021, "eta_base": -102.275, "theta_base": -117.162, "v0": 1.997, "v1": -24.546, "v2": 36.537, "v3": -36.370, "v4": 21.648, "amplitude": 37.942, "phase_angle": 15.637, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.428, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 142.606, 165.686, 202.413 ], "x_axis": [ -0.676, -0.220, -0.703 ], "y_axis": [ 0.736, -0.250, -0.629 ], "z_axis": [ -0.038, -0.943, 0.331 ], "quaternion": [ -0.318, -0.247, -0.523, 0.751 ] } }, { "index": 561, "index_chain": 561, "chain_name": "A", "nt_resnum": 563, "nt_name": "C", "nt_code": "C", "nt_id": "///A/563", "linked_nts": [ "///A/562", "///A/564" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -56.297, "beta": 172.869, "gamma": 55.408, "delta": 80.686, "epsilon": -155.098, "zeta": -80.628, "epsilon_zeta": -74.471, "bb_type": "BI", "chi": -152.053, "glyco_bond": "anti", "C5prime_xyz": [ -1.477, 8.848, 0.035 ], "P_xyz": [ 1.079, 9.376, -0.003 ], "form": ".", "ssZp": 4.140, "Dp": 4.511, "splay_angle": 23.781, "splay_distance": 4.363, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 176.481, "theta": -124.716, "eta_prime": -168.767, "theta_prime": -137.144, "eta_base": -132.010, "theta_base": -128.670, "v0": -1.690, "v1": -21.093, "v2": 34.607, "v3": -36.536, "v4": 24.102, "amplitude": 37.110, "phase_angle": 21.164, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.924, "filter_rmsd": 0.059, "frame": { "rmsd": 0.007, "origin": [ 140.722, 162.218, 203.577 ], "x_axis": [ -0.183, -0.301, -0.936 ], "y_axis": [ 0.977, -0.164, -0.138 ], "z_axis": [ -0.112, -0.939, 0.324 ], "quaternion": [ -0.494, -0.405, -0.417, 0.646 ] } }, { "index": 562, "index_chain": 562, "chain_name": "A", "nt_resnum": 564, "nt_name": "G", "nt_code": "G", "nt_id": "///A/564", "linked_nts": [ "///A/563", "///A/565" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 139.472, "beta": -158.037, "gamma": -167.882, "delta": 82.482, "epsilon": -134.650, "zeta": -87.202, "epsilon_zeta": -47.448, "bb_type": "BI", "chi": 177.580, "glyco_bond": "anti", "C5prime_xyz": [ -1.877, 8.546, 1.726 ], "P_xyz": [ -0.533, 10.662, 0.990 ], "form": "A", "ssZp": 4.377, "Dp": 4.470, "splay_angle": 21.044, "splay_distance": 3.320, "splay_ratio": 0.183, "d22": null, "d64": null, "eta": 167.981, "theta": 179.099, "eta_prime": 178.532, "theta_prime": -171.897, "eta_base": -155.568, "theta_base": -142.943, "v0": -3.831, "v1": -18.374, "v2": 32.227, "v3": -35.400, "v4": 24.756, "amplitude": 35.472, "phase_angle": 24.697, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.591, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 137.949, 158.879, 204.019 ], "x_axis": [ 0.185, 0.110, -0.977 ], "y_axis": [ 0.982, 0.005, 0.186 ], "z_axis": [ 0.025, -0.994, -0.107 ], "quaternion": [ 0.520, 0.567, 0.481, -0.419 ] } }, { "index": 563, "index_chain": 563, "chain_name": "A", "nt_resnum": 565, "nt_name": "U", "nt_code": "U", "nt_id": "///A/565", "linked_nts": [ "///A/564", "///A/566" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.708, "beta": 171.043, "gamma": 47.927, "delta": 83.958, "epsilon": -157.928, "zeta": -68.442, "epsilon_zeta": -89.486, "bb_type": "BI", "chi": -160.260, "glyco_bond": "anti", "C5prime_xyz": [ -1.333, 8.705, 0.546 ], "P_xyz": [ 1.229, 9.053, 0.973 ], "form": "A", "ssZp": 4.335, "Dp": 4.492, "splay_angle": 22.167, "splay_distance": 3.594, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 160.467, "theta": -145.473, "eta_prime": 172.586, "theta_prime": -146.281, "eta_base": -151.582, "theta_base": -126.180, "v0": 1.297, "v1": -22.402, "v2": 33.764, "v3": -33.961, "v4": 20.626, "amplitude": 35.224, "phase_angle": 16.554, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.736, "filter_rmsd": 0.103, "frame": { "rmsd": 0.007, "origin": [ 136.379, 155.976, 203.659 ], "x_axis": [ 0.716, 0.138, -0.684 ], "y_axis": [ 0.698, -0.123, 0.706 ], "z_axis": [ 0.013, -0.983, -0.184 ], "quaternion": [ 0.593, 0.711, 0.294, -0.236 ] } }, { "index": 564, "index_chain": 564, "chain_name": "A", "nt_resnum": 566, "nt_name": "G", "nt_code": "G", "nt_id": "///A/566", "linked_nts": [ "///A/565", "///A/567" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -71.211, "beta": 172.474, "gamma": 61.702, "delta": 80.840, "epsilon": -127.441, "zeta": -77.869, "epsilon_zeta": -49.572, "bb_type": "--", "chi": -160.603, "glyco_bond": "anti", "C5prime_xyz": [ -1.527, 8.840, 0.528 ], "P_xyz": [ 1.015, 9.445, 0.603 ], "form": ".", "ssZp": 4.258, "Dp": 4.619, "splay_angle": 27.156, "splay_distance": 4.383, "splay_ratio": 0.235, "d22": null, "d64": null, "eta": 174.251, "theta": -137.269, "eta_prime": -174.415, "theta_prime": -133.187, "eta_base": -142.382, "theta_base": -94.847, "v0": -1.592, "v1": -21.016, "v2": 34.327, "v3": -36.165, "v4": 23.809, "amplitude": 36.769, "phase_angle": 20.998, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.828, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 135.563, 153.073, 201.703 ], "x_axis": [ 0.962, 0.087, -0.258 ], "y_axis": [ 0.271, -0.232, 0.934 ], "z_axis": [ 0.022, -0.969, -0.247 ], "quaternion": [ 0.609, 0.781, 0.115, -0.076 ] } }, { "index": 565, "index_chain": 565, "chain_name": "A", "nt_resnum": 567, "nt_name": "U", "nt_code": "U", "nt_id": "///A/567", "linked_nts": [ "///A/566", "///A/568" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -71.093, "beta": 142.544, "gamma": 88.170, "delta": 82.536, "epsilon": -169.876, "zeta": -103.169, "epsilon_zeta": -66.706, "bb_type": "BI", "chi": -159.648, "glyco_bond": "anti", "C5prime_xyz": [ -1.544, 8.791, 0.459 ], "P_xyz": [ 0.663, 9.282, -0.853 ], "form": ".", "ssZp": 4.272, "Dp": 4.359, "splay_angle": 26.723, "splay_distance": 4.033, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 166.937, "theta": -169.751, "eta_prime": -163.683, "theta_prime": -168.910, "eta_base": -107.300, "theta_base": -159.002, "v0": -2.498, "v1": -19.502, "v2": 32.684, "v3": -35.033, "v4": 23.711, "amplitude": 35.386, "phase_angle": 22.536, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 138.060, 149.755, 200.302 ], "x_axis": [ 0.920, -0.145, 0.364 ], "y_axis": [ -0.391, -0.382, 0.837 ], "z_axis": [ 0.017, -0.913, -0.408 ], "quaternion": [ 0.532, 0.823, -0.163, 0.116 ] } }, { "index": 566, "index_chain": 566, "chain_name": "A", "nt_resnum": 568, "nt_name": "G", "nt_code": "G", "nt_id": "///A/568", "linked_nts": [ "///A/567", "///A/569" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -133.679, "beta": -130.091, "gamma": 80.885, "delta": 85.729, "epsilon": -155.544, "zeta": -67.063, "epsilon_zeta": -88.481, "bb_type": "BI", "chi": -170.928, "glyco_bond": "anti", "C5prime_xyz": [ -0.811, 8.444, 1.220 ], "P_xyz": [ 1.584, 7.662, 1.970 ], "form": "A", "ssZp": 4.561, "Dp": 4.592, "splay_angle": 21.881, "splay_distance": 3.388, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 160.491, "theta": -133.177, "eta_prime": 154.329, "theta_prime": -134.123, "eta_base": 170.486, "theta_base": -120.119, "v0": 6.855, "v1": -26.314, "v2": 34.700, "v3": -31.698, "v4": 15.739, "amplitude": 35.009, "phase_angle": 7.610, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.023, "frame": { "rmsd": 0.023, "origin": [ 137.139, 146.822, 197.692 ], "x_axis": [ 0.360, 0.396, 0.845 ], "y_axis": [ -0.835, -0.267, 0.481 ], "z_axis": [ 0.416, -0.879, 0.235 ], "quaternion": [ 0.576, 0.590, -0.186, 0.534 ] } }, { "index": 567, "index_chain": 567, "chain_name": "A", "nt_resnum": 569, "nt_name": "C", "nt_code": "C", "nt_id": "///A/569", "linked_nts": [ "///A/568", "///A/570" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -75.251, "beta": -175.004, "gamma": 53.987, "delta": 83.720, "epsilon": -176.739, "zeta": -80.211, "epsilon_zeta": -96.528, "bb_type": "BI", "chi": -160.738, "glyco_bond": "anti", "C5prime_xyz": [ -1.154, 8.675, 0.598 ], "P_xyz": [ 1.403, 8.884, 1.107 ], "form": "A", "ssZp": 4.298, "Dp": 4.376, "splay_angle": 24.498, "splay_distance": 3.909, "splay_ratio": 0.215, "d22": 4.556, "d64": 4.752, "eta": 164.980, "theta": -136.561, "eta_prime": -178.375, "theta_prime": -139.151, "eta_base": -143.075, "theta_base": -117.206, "v0": 3.557, "v1": -24.636, "v2": 35.222, "v3": -34.143, "v4": 19.317, "amplitude": 36.166, "phase_angle": 13.120, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.832, "filter_rmsd": 0.062, "frame": { "rmsd": 0.008, "origin": [ 139.769, 144.687, 197.619 ], "x_axis": [ -0.153, 0.255, 0.955 ], "y_axis": [ -0.871, -0.491, -0.008 ], "z_axis": [ 0.467, -0.833, 0.297 ], "quaternion": [ 0.404, 0.510, -0.302, 0.697 ] } }, { "index": 568, "index_chain": 568, "chain_name": "A", "nt_resnum": 570, "nt_name": "C", "nt_code": "C", "nt_id": "///A/570", "linked_nts": [ "///A/569", "///A/571" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -178.402, "beta": -139.106, "gamma": 146.628, "delta": 81.239, "epsilon": -127.539, "zeta": -113.773, "epsilon_zeta": -13.766, "bb_type": "--", "chi": -171.927, "glyco_bond": "anti", "C5prime_xyz": [ -1.552, 8.733, 1.193 ], "P_xyz": [ 0.820, 9.372, 0.332 ], "form": "A", "ssZp": 4.392, "Dp": 4.525, "splay_angle": 23.951, "splay_distance": 4.006, "splay_ratio": 0.210, "d22": 4.621, "d64": 4.847, "eta": 171.402, "theta": -132.966, "eta_prime": -172.874, "theta_prime": -145.105, "eta_base": -136.258, "theta_base": -127.905, "v0": -3.075, "v1": -19.128, "v2": 32.807, "v3": -35.564, "v4": 24.328, "amplitude": 35.766, "phase_angle": 23.470, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.008, "origin": [ 142.644, 142.721, 199.394 ], "x_axis": [ -0.592, -0.016, 0.806 ], "y_axis": [ -0.643, -0.594, -0.483 ], "z_axis": [ 0.486, -0.804, 0.341 ], "quaternion": [ 0.197, 0.407, -0.405, 0.795 ] } }, { "index": 569, "index_chain": 569, "chain_name": "A", "nt_resnum": 571, "nt_name": "U", "nt_code": "U", "nt_id": "///A/571", "linked_nts": [ "///A/570", "///A/572" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack", "alpha": 127.133, "beta": -130.093, "gamma": -174.871, "delta": 81.965, "epsilon": -95.518, "zeta": -117.957, "epsilon_zeta": 22.439, "bb_type": "--", "chi": -176.643, "glyco_bond": "anti", "C5prime_xyz": [ -1.358, 8.435, 1.524 ], "P_xyz": [ 0.262, 9.850, 0.047 ], "form": ".", "ssZp": 4.512, "Dp": 4.698, "splay_angle": 49.407, "splay_distance": 7.779, "splay_ratio": 0.418, "d22": null, "d64": null, "eta": 166.324, "theta": -175.353, "eta_prime": 178.054, "theta_prime": -158.723, "eta_base": -148.269, "theta_base": -145.730, "v0": 3.795, "v1": -25.405, "v2": 36.210, "v3": -34.965, "v4": 19.665, "amplitude": 37.140, "phase_angle": 12.855, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.007, "origin": [ 145.053, 140.747, 201.913 ], "x_axis": [ -0.843, -0.246, 0.479 ], "y_axis": [ -0.267, -0.581, -0.769 ], "z_axis": [ 0.468, -0.776, 0.424 ], "quaternion": [ 0.006, 0.281, -0.458, 0.844 ] } }, { "index": 570, "index_chain": 570, "chain_name": "A", "nt_resnum": 572, "nt_name": "A", "nt_code": "A", "nt_id": "///A/572", "linked_nts": [ "///A/571", "///A/573" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,multiplet,ss-non-loop,A-minor,phosphate,splayed-apart", "alpha": -49.940, "beta": -175.523, "gamma": 45.313, "delta": 83.022, "epsilon": -107.207, "zeta": 160.637, "epsilon_zeta": 92.157, "bb_type": "BII", "chi": -114.056, "glyco_bond": "anti", "C5prime_xyz": [ -1.983, 8.261, -2.028 ], "P_xyz": [ 0.389, 8.969, -2.867 ], "form": ".", "ssZp": 1.306, "Dp": 4.558, "splay_angle": 133.751, "splay_distance": 19.072, "splay_ratio": 0.920, "d22": null, "d64": null, "eta": -156.371, "theta": 106.763, "eta_prime": -163.825, "theta_prime": 126.664, "eta_base": -166.690, "theta_base": 163.670, "v0": -2.379, "v1": -19.334, "v2": 32.359, "v3": -34.648, "v4": 23.405, "amplitude": 35.006, "phase_angle": 22.425, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.080, "filter_rmsd": 0.043, "frame": { "rmsd": 0.008, "origin": [ 149.509, 135.648, 205.740 ], "x_axis": [ -0.920, -0.336, 0.202 ], "y_axis": [ -0.026, -0.462, -0.886 ], "z_axis": [ 0.391, -0.821, 0.417 ], "quaternion": [ -0.093, 0.177, -0.510, 0.837 ] } }, { "index": 571, "index_chain": 571, "chain_name": "A", "nt_resnum": 573, "nt_name": "C", "nt_code": "C", "nt_id": "///A/573", "linked_nts": [ "///A/572", "///A/574" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,cap-acceptor,splayed-apart", "alpha": -43.344, "beta": -159.910, "gamma": 25.753, "delta": 145.313, "epsilon": -103.163, "zeta": 103.946, "epsilon_zeta": 152.891, "bb_type": "--", "chi": -148.070, "glyco_bond": "anti", "C5prime_xyz": [ -2.046, 8.805, 0.211 ], "P_xyz": [ -1.068, 10.104, 2.264 ], "form": ".", "ssZp": 0.842, "Dp": 0.985, "splay_angle": 28.846, "splay_distance": 5.038, "splay_ratio": 0.299, "d22": null, "d64": null, "eta": -108.528, "theta": 129.181, "eta_prime": -119.834, "theta_prime": 96.456, "eta_base": -155.133, "theta_base": 114.827, "v0": -24.741, "v1": 38.095, "v2": -36.095, "v3": 22.797, "v4": 0.969, "amplitude": 38.475, "phase_angle": 159.739, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "3b", "suiteness": 0.096, "filter_rmsd": 0.060, "frame": { "rmsd": 0.009, "origin": [ 159.196, 124.587, 193.594 ], "x_axis": [ 0.418, -0.139, 0.898 ], "y_axis": [ -0.580, 0.720, 0.381 ], "z_axis": [ -0.700, -0.680, 0.220 ], "quaternion": [ 0.768, 0.346, -0.520, 0.143 ] } }, { "index": 572, "index_chain": 572, "chain_name": "A", "nt_resnum": 574, "nt_name": "A", "nt_code": "A", "nt_id": "///A/574", "linked_nts": [ "///A/573", "///A/575" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": 64.268, "beta": -151.198, "gamma": -176.582, "delta": 82.636, "epsilon": -141.583, "zeta": -83.085, "epsilon_zeta": -58.498, "bb_type": "BI", "chi": 35.866, "glyco_bond": "syn", "C5prime_xyz": [ -5.403, 3.356, 0.452 ], "P_xyz": [ -6.050, 2.228, 2.728 ], "form": ".", "ssZp": -3.788, "Dp": 4.597, "splay_angle": 65.809, "splay_distance": 9.507, "splay_ratio": 0.550, "d22": null, "d64": null, "eta": 143.135, "theta": 178.378, "eta_prime": 128.933, "theta_prime": -168.614, "eta_base": 165.957, "theta_base": 142.059, "v0": 0.143, "v1": -22.076, "v2": 34.257, "v3": -35.140, "v4": 22.095, "amplitude": 36.097, "phase_angle": 18.373, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6n", "suiteness": 0.615, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 158.468, 128.989, 191.256 ], "x_axis": [ 0.854, -0.026, 0.520 ], "y_axis": [ -0.156, 0.940, 0.304 ], "z_axis": [ -0.497, -0.341, 0.798 ], "quaternion": [ 0.948, 0.170, -0.268, 0.034 ] } }, { "index": 573, "index_chain": 573, "chain_name": "A", "nt_resnum": 575, "nt_name": "A", "nt_code": "A", "nt_id": "///A/575", "linked_nts": [ "///A/574", "///A/576" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop", "alpha": -58.082, "beta": -149.806, "gamma": 45.867, "delta": 141.953, "epsilon": -142.049, "zeta": 178.928, "epsilon_zeta": 39.023, "bb_type": "--", "chi": -62.380, "glyco_bond": "--", "C5prime_xyz": [ -3.748, 6.554, -2.988 ], "P_xyz": [ -2.226, 8.100, -4.453 ], "form": "Z", "ssZp": 1.145, "Dp": 1.898, "splay_angle": 36.943, "splay_distance": 6.146, "splay_ratio": 0.348, "d22": null, "d64": null, "eta": -161.600, "theta": 127.673, "eta_prime": -153.616, "theta_prime": 88.873, "eta_base": 153.120, "theta_base": 78.941, "v0": -26.104, "v1": 37.814, "v2": -34.360, "v3": 20.225, "v4": 3.483, "amplitude": 37.624, "phase_angle": 155.958, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.785, "filter_rmsd": 0.039, "frame": { "rmsd": 0.009, "origin": [ 163.480, 137.034, 190.518 ], "x_axis": [ 0.517, -0.855, 0.043 ], "y_axis": [ -0.507, -0.346, -0.789 ], "z_axis": [ 0.690, 0.386, -0.613 ], "quaternion": [ -0.374, 0.787, -0.433, 0.233 ] } }, { "index": 574, "index_chain": 574, "chain_name": "A", "nt_resnum": 576, "nt_name": "G", "nt_code": "G", "nt_id": "///A/576", "linked_nts": [ "///A/575", "///A/577" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,cap-acceptor,phosphate,splayed-apart", "alpha": -35.929, "beta": -83.361, "gamma": -146.078, "delta": 148.623, "epsilon": -110.140, "zeta": -100.603, "epsilon_zeta": -9.537, "bb_type": "--", "chi": 68.958, "glyco_bond": "syn", "C5prime_xyz": [ -5.196, 4.214, 1.602 ], "P_xyz": [ -4.643, 4.184, 4.166 ], "form": ".", "ssZp": -1.068, "Dp": 1.115, "splay_angle": 101.549, "splay_distance": 16.492, "splay_ratio": 0.776, "d22": null, "d64": null, "eta": -172.001, "theta": -145.186, "eta_prime": 146.662, "theta_prime": -140.235, "eta_base": 143.125, "theta_base": -137.889, "v0": -21.419, "v1": 36.152, "v2": -36.255, "v3": 24.846, "v4": -2.343, "amplitude": 37.575, "phase_angle": 164.769, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 158.340, 140.337, 189.850 ], "x_axis": [ -0.540, -0.284, 0.792 ], "y_axis": [ -0.841, 0.202, -0.501 ], "z_axis": [ -0.018, -0.937, -0.348 ], "quaternion": [ -0.280, -0.389, 0.723, -0.498 ] } }, { "index": 575, "index_chain": 575, "chain_name": "A", "nt_resnum": 577, "nt_name": "U", "nt_code": "U", "nt_id": "///A/577", "linked_nts": [ "///A/576", "///A/578" ], "nt_type": "RNA", "dbn": "(", "summary": "turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,phosphate,splayed-apart", "alpha": 131.571, "beta": 148.194, "gamma": -90.738, "delta": 148.475, "epsilon": -143.210, "zeta": 115.500, "epsilon_zeta": 101.289, "bb_type": "--", "chi": -99.150, "glyco_bond": "anti", "C5prime_xyz": [ -2.579, 7.996, -2.139 ], "P_xyz": [ -2.825, 10.470, -2.981 ], "form": "Z", "ssZp": 1.725, "Dp": 1.756, "splay_angle": 45.139, "splay_distance": 6.951, "splay_ratio": 0.401, "d22": null, "d64": null, "eta": -158.125, "theta": 77.686, "eta_prime": -120.069, "theta_prime": 59.399, "eta_base": -143.963, "theta_base": 44.682, "v0": -24.150, "v1": 38.693, "v2": -37.662, "v3": 24.661, "v4": -0.527, "amplitude": 39.599, "phase_angle": 162.003, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.100, "frame": { "rmsd": 0.009, "origin": [ 159.915, 154.787, 182.059 ], "x_axis": [ 0.928, -0.145, -0.343 ], "y_axis": [ -0.283, -0.874, -0.395 ], "z_axis": [ -0.243, 0.464, -0.852 ], "quaternion": [ -0.225, 0.956, -0.112, -0.153 ] } }, { "index": 576, "index_chain": 576, "chain_name": "A", "nt_resnum": 578, "nt_name": "A", "nt_code": "A", "nt_id": "///A/578", "linked_nts": [ "///A/577", "///A/579" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,A-minor,phosphate", "alpha": 42.189, "beta": -153.753, "gamma": -156.779, "delta": 146.472, "epsilon": -154.023, "zeta": 80.910, "epsilon_zeta": 125.067, "bb_type": "--", "chi": 72.084, "glyco_bond": "syn", "C5prime_xyz": [ -5.152, 4.273, 1.813 ], "P_xyz": [ -5.360, 3.262, 4.219 ], "form": ".", "ssZp": -1.937, "Dp": 1.957, "splay_angle": 84.481, "splay_distance": 12.993, "splay_ratio": 0.672, "d22": null, "d64": null, "eta": 152.168, "theta": 36.805, "eta_prime": 143.156, "theta_prime": 28.542, "eta_base": 137.684, "theta_base": 41.290, "v0": -23.026, "v1": 36.578, "v2": -35.363, "v3": 23.028, "v4": -0.186, "amplitude": 37.288, "phase_angle": 161.513, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 156.592, 149.744, 185.501 ], "x_axis": [ 0.615, -0.651, 0.446 ], "y_axis": [ -0.735, -0.677, 0.027 ], "z_axis": [ 0.284, -0.344, -0.895 ], "quaternion": [ 0.104, 0.893, -0.388, 0.204 ] } }, { "index": 577, "index_chain": 577, "chain_name": "A", "nt_resnum": 579, "nt_name": "G", "nt_code": "G", "nt_id": "///A/579", "linked_nts": [ "///A/578", "///A/580" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,phosphate", "alpha": 70.549, "beta": -120.668, "gamma": -172.204, "delta": 85.262, "epsilon": -120.460, "zeta": -85.957, "epsilon_zeta": -34.503, "bb_type": "--", "chi": 178.981, "glyco_bond": "anti", "C5prime_xyz": [ -1.374, 8.409, 1.763 ], "P_xyz": [ 0.395, 9.729, 0.356 ], "form": "A", "ssZp": 4.507, "Dp": 4.595, "splay_angle": 21.909, "splay_distance": 3.455, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 160.863, "theta": -156.343, "eta_prime": 170.241, "theta_prime": -153.726, "eta_base": -147.853, "theta_base": -114.933, "v0": 1.913, "v1": -22.384, "v2": 33.135, "v3": -32.949, "v4": 19.609, "amplitude": 34.384, "phase_angle": 15.489, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 148.918, 142.953, 177.512 ], "x_axis": [ 0.218, -0.700, 0.680 ], "y_axis": [ -0.165, 0.660, 0.733 ], "z_axis": [ -0.962, -0.272, 0.028 ], "quaternion": [ 0.690, 0.364, -0.595, -0.194 ] } }, { "index": 578, "index_chain": 578, "chain_name": "A", "nt_resnum": 580, "nt_name": "U", "nt_code": "U", "nt_id": "///A/580", "linked_nts": [ "///A/579", "///A/581" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -55.518, "beta": 155.289, "gamma": 50.248, "delta": 83.692, "epsilon": -148.688, "zeta": -76.644, "epsilon_zeta": -72.044, "bb_type": "BI", "chi": -164.720, "glyco_bond": "anti", "C5prime_xyz": [ -1.551, 8.721, 0.799 ], "P_xyz": [ 1.031, 9.008, 1.087 ], "form": "A", "ssZp": 4.352, "Dp": 4.485, "splay_angle": 21.430, "splay_distance": 3.425, "splay_ratio": 0.186, "d22": 4.590, "d64": 4.348, "eta": 158.627, "theta": -144.528, "eta_prime": 179.656, "theta_prime": -148.120, "eta_base": -124.990, "theta_base": -128.366, "v0": -1.090, "v1": -20.267, "v2": 32.648, "v3": -34.188, "v4": 22.269, "amplitude": 34.823, "phase_angle": 20.355, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.463, "filter_rmsd": 0.105, "frame": { "rmsd": 0.008, "origin": [ 146.228, 140.820, 177.906 ], "x_axis": [ 0.153, -0.062, 0.986 ], "y_axis": [ -0.305, 0.946, 0.107 ], "z_axis": [ -0.940, -0.317, 0.126 ], "quaternion": [ 0.746, 0.142, -0.646, 0.081 ] } }, { "index": 579, "index_chain": 579, "chain_name": "A", "nt_resnum": 581, "nt_name": "C", "nt_code": "C", "nt_id": "///A/581", "linked_nts": [ "///A/580", "///A/582" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -78.325, "beta": 171.780, "gamma": 58.499, "delta": 79.535, "epsilon": -148.895, "zeta": -68.624, "epsilon_zeta": -80.272, "bb_type": "BI", "chi": -163.284, "glyco_bond": "anti", "C5prime_xyz": [ -1.339, 8.741, 0.687 ], "P_xyz": [ 1.229, 9.210, 0.644 ], "form": "A", "ssZp": 4.531, "Dp": 4.663, "splay_angle": 21.653, "splay_distance": 3.483, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 158.705, "theta": -142.634, "eta_prime": 169.932, "theta_prime": -142.732, "eta_base": -153.434, "theta_base": -116.506, "v0": 1.529, "v1": -24.601, "v2": 37.042, "v3": -37.134, "v4": 22.448, "amplitude": 38.604, "phase_angle": 16.353, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.812, "filter_rmsd": 0.062, "frame": { "rmsd": 0.008, "origin": [ 143.725, 138.502, 178.199 ], "x_axis": [ 0.053, 0.466, 0.883 ], "y_axis": [ -0.410, 0.817, -0.406 ], "z_axis": [ -0.910, -0.341, 0.235 ], "quaternion": [ 0.725, -0.023, -0.618, 0.302 ] } }, { "index": 580, "index_chain": 580, "chain_name": "A", "nt_resnum": 582, "nt_name": "A", "nt_code": "A", "nt_id": "///A/582", "linked_nts": [ "///A/581", "///A/583" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -68.261, "beta": 178.651, "gamma": 50.660, "delta": 80.843, "epsilon": -147.054, "zeta": -60.592, "epsilon_zeta": -86.462, "bb_type": "BI", "chi": -163.650, "glyco_bond": "anti", "C5prime_xyz": [ -1.538, 8.708, 0.722 ], "P_xyz": [ 0.953, 9.309, 1.245 ], "form": ".", "ssZp": 4.455, "Dp": 4.598, "splay_angle": 32.033, "splay_distance": 4.927, "splay_ratio": 0.276, "d22": null, "d64": null, "eta": 164.830, "theta": -133.567, "eta_prime": 177.737, "theta_prime": -128.532, "eta_base": -140.855, "theta_base": -80.452, "v0": 0.090, "v1": -22.712, "v2": 35.453, "v3": -36.355, "v4": 22.854, "amplitude": 37.375, "phase_angle": 18.452, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.967, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 141.733, 137.052, 180.662 ], "x_axis": [ 0.108, 0.915, 0.388 ], "y_axis": [ -0.446, 0.393, -0.804 ], "z_axis": [ -0.889, -0.085, 0.451 ], "quaternion": [ 0.699, -0.257, -0.457, 0.487 ] } }, { "index": 581, "index_chain": 581, "chain_name": "A", "nt_resnum": 583, "nt_name": "G", "nt_code": "G", "nt_id": "///A/583", "linked_nts": [ "///A/582", "///A/584" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -71.812, "beta": 177.282, "gamma": 58.732, "delta": 81.981, "epsilon": -148.599, "zeta": -116.742, "epsilon_zeta": -31.857, "bb_type": "BI", "chi": -158.707, "glyco_bond": "anti", "C5prime_xyz": [ -1.133, 8.664, 0.454 ], "P_xyz": [ 1.469, 8.867, 0.430 ], "form": ".", "ssZp": 4.405, "Dp": 4.668, "splay_angle": 48.842, "splay_distance": 7.560, "splay_ratio": 0.414, "d22": null, "d64": null, "eta": 166.667, "theta": 170.654, "eta_prime": -171.385, "theta_prime": 169.946, "eta_base": -105.894, "theta_base": 161.926, "v0": 4.659, "v1": -26.512, "v2": 37.145, "v3": -35.496, "v4": 19.458, "amplitude": 37.941, "phase_angle": 11.752, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.870, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 138.576, 139.996, 183.036 ], "x_axis": [ -0.250, 0.855, -0.454 ], "y_axis": [ -0.396, -0.518, -0.758 ], "z_axis": [ -0.884, -0.009, 0.468 ], "quaternion": [ 0.418, -0.447, -0.257, 0.748 ] } }, { "index": 582, "index_chain": 582, "chain_name": "A", "nt_resnum": 584, "nt_name": "A", "nt_code": "A", "nt_id": "///A/584", "linked_nts": [ "///A/583", "///A/585" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -67.147, "beta": 147.072, "gamma": 69.015, "delta": 79.402, "epsilon": -138.165, "zeta": -72.570, "epsilon_zeta": -65.595, "bb_type": "BI", "chi": -172.626, "glyco_bond": "anti", "C5prime_xyz": [ -1.788, 8.642, 1.181 ], "P_xyz": [ 0.687, 9.328, 0.761 ], "form": ".", "ssZp": 4.609, "Dp": 4.632, "splay_angle": 31.381, "splay_distance": 4.847, "splay_ratio": 0.271, "d22": null, "d64": null, "eta": 173.766, "theta": -135.206, "eta_prime": 169.242, "theta_prime": -134.849, "eta_base": 158.297, "theta_base": -91.213, "v0": -3.302, "v1": -19.784, "v2": 33.961, "v3": -36.813, "v4": 25.322, "amplitude": 37.060, "phase_angle": 23.595, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.290, "filter_rmsd": 0.038, "frame": { "rmsd": 0.011, "origin": [ 137.403, 134.970, 188.559 ], "x_axis": [ 0.081, 0.966, -0.246 ], "y_axis": [ -0.471, -0.180, -0.864 ], "z_axis": [ -0.879, 0.186, 0.440 ], "quaternion": [ 0.579, -0.453, -0.273, 0.620 ] } }, { "index": 583, "index_chain": 583, "chain_name": "A", "nt_resnum": 585, "nt_name": "G", "nt_code": "G", "nt_id": "///A/585", "linked_nts": [ "///A/584", "///A/586" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -54.965, "beta": 161.806, "gamma": 52.525, "delta": 81.115, "epsilon": -137.215, "zeta": -74.923, "epsilon_zeta": -62.292, "bb_type": "BI", "chi": -171.848, "glyco_bond": "anti", "C5prime_xyz": [ -1.514, 8.600, 1.215 ], "P_xyz": [ 1.061, 8.912, 1.530 ], "form": "A", "ssZp": 4.618, "Dp": 4.679, "splay_angle": 27.234, "splay_distance": 4.284, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 167.824, "theta": -135.346, "eta_prime": -170.954, "theta_prime": -133.399, "eta_base": -105.512, "theta_base": -98.460, "v0": 2.066, "v1": -24.362, "v2": 36.208, "v3": -36.014, "v4": 21.408, "amplitude": 37.582, "phase_angle": 15.543, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.840, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 134.201, 138.523, 189.345 ], "x_axis": [ -0.253, 0.448, -0.858 ], "y_axis": [ -0.290, -0.881, -0.374 ], "z_axis": [ -0.923, 0.154, 0.352 ], "quaternion": [ 0.234, -0.565, -0.070, 0.788 ] } }, { "index": 584, "index_chain": 584, "chain_name": "A", "nt_resnum": 586, "nt_name": "C", "nt_code": "C", "nt_id": "///A/586", "linked_nts": [ "///A/585", "///A/587" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -56.148, "beta": 166.271, "gamma": 54.052, "delta": 80.811, "epsilon": -152.667, "zeta": -70.790, "epsilon_zeta": -81.877, "bb_type": "BI", "chi": -166.214, "glyco_bond": "anti", "C5prime_xyz": [ -1.422, 8.733, 0.881 ], "P_xyz": [ 1.150, 9.168, 1.092 ], "form": "A", "ssZp": 4.520, "Dp": 4.579, "splay_angle": 21.728, "splay_distance": 3.484, "splay_ratio": 0.191, "d22": 4.207, "d64": 4.323, "eta": 168.259, "theta": -145.744, "eta_prime": -173.057, "theta_prime": -145.998, "eta_base": -118.970, "theta_base": -120.478, "v0": 0.439, "v1": -22.827, "v2": 35.283, "v3": -36.005, "v4": 22.405, "amplitude": 37.085, "phase_angle": 17.934, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.872, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 130.579, 140.802, 189.129 ], "x_axis": [ -0.322, -0.273, -0.907 ], "y_axis": [ -0.042, -0.952, 0.302 ], "z_axis": [ -0.946, 0.135, 0.295 ], "quaternion": [ -0.072, -0.578, 0.136, 0.802 ] } }, { "index": 585, "index_chain": 585, "chain_name": "A", "nt_resnum": 587, "nt_name": "C", "nt_code": "C", "nt_id": "///A/587", "linked_nts": [ "///A/586", "///A/588" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.981, "beta": 172.428, "gamma": 57.599, "delta": 80.736, "epsilon": -166.987, "zeta": -78.034, "epsilon_zeta": -88.953, "bb_type": "BI", "chi": -164.154, "glyco_bond": "anti", "C5prime_xyz": [ -1.479, 8.782, 0.746 ], "P_xyz": [ 1.073, 9.295, 0.992 ], "form": "A", "ssZp": 4.400, "Dp": 4.448, "splay_angle": 20.375, "splay_distance": 3.459, "splay_ratio": 0.186, "d22": 4.328, "d64": 4.439, "eta": 166.606, "theta": -134.231, "eta_prime": -177.134, "theta_prime": -141.535, "eta_base": -134.291, "theta_base": -121.334, "v0": -0.327, "v1": -22.284, "v2": 35.115, "v3": -36.271, "v4": 23.072, "amplitude": 37.157, "phase_angle": 19.082, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.959, "filter_rmsd": 0.060, "frame": { "rmsd": 0.005, "origin": [ 127.526, 142.444, 188.785 ], "x_axis": [ -0.226, -0.752, -0.620 ], "y_axis": [ 0.076, -0.648, 0.758 ], "z_axis": [ -0.971, 0.124, 0.203 ], "quaternion": [ -0.287, -0.552, 0.306, 0.720 ] } }, { "index": 586, "index_chain": 586, "chain_name": "A", "nt_resnum": 588, "nt_name": "C", "nt_code": "C", "nt_id": "///A/588", "linked_nts": [ "///A/587", "///A/589" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor", "alpha": 176.889, "beta": -155.756, "gamma": 153.838, "delta": 83.501, "epsilon": -148.449, "zeta": -70.962, "epsilon_zeta": -77.487, "bb_type": "BI", "chi": -173.390, "glyco_bond": "anti", "C5prime_xyz": [ -1.552, 8.705, 1.267 ], "P_xyz": [ 0.649, 9.821, 0.391 ], "form": ".", "ssZp": 4.319, "Dp": 4.413, "splay_angle": 25.741, "splay_distance": 3.961, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 162.716, "theta": -153.082, "eta_prime": -179.958, "theta_prime": -145.631, "eta_base": -141.759, "theta_base": -97.562, "v0": -2.624, "v1": -18.474, "v2": 31.222, "v3": -33.621, "v4": 22.856, "amplitude": 33.898, "phase_angle": 22.918, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.106, "filter_rmsd": 0.063, "frame": { "rmsd": 0.008, "origin": [ 124.513, 143.324, 187.330 ], "x_axis": [ -0.001, -0.988, -0.155 ], "y_axis": [ 0.042, -0.155, 0.987 ], "z_axis": [ -0.999, -0.005, 0.042 ], "quaternion": [ -0.471, -0.527, 0.449, 0.547 ] } }, { "index": 587, "index_chain": 587, "chain_name": "A", "nt_resnum": 589, "nt_name": "G", "nt_code": "G", "nt_id": "///A/589", "linked_nts": [ "///A/588", "///A/590" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,hairpin-loop", "alpha": -63.889, "beta": 173.844, "gamma": 71.334, "delta": 148.088, "epsilon": -111.639, "zeta": 164.850, "epsilon_zeta": 83.511, "bb_type": "BII", "chi": -128.774, "glyco_bond": "anti", "C5prime_xyz": [ -1.450, 8.573, -0.692 ], "P_xyz": [ 1.127, 8.603, -0.192 ], "form": ".", "ssZp": 1.273, "Dp": 1.380, "splay_angle": 55.361, "splay_distance": 8.975, "splay_ratio": 0.469, "d22": null, "d64": null, "eta": -166.022, "theta": 162.250, "eta_prime": -130.634, "theta_prime": 156.967, "eta_base": -80.493, "theta_base": -179.039, "v0": -16.292, "v1": 31.335, "v2": -33.612, "v3": 25.046, "v4": -5.702, "amplitude": 34.057, "phase_angle": 170.733, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.687, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 120.933, 141.643, 187.540 ], "x_axis": [ 0.013, -0.766, 0.642 ], "y_axis": [ -0.075, 0.640, 0.765 ], "z_axis": [ -0.997, -0.058, -0.050 ], "quaternion": [ 0.633, 0.325, -0.647, -0.273 ] } }, { "index": 588, "index_chain": 588, "chain_name": "A", "nt_resnum": 590, "nt_name": "U", "nt_code": "U", "nt_id": "///A/590", "linked_nts": [ "///A/589", "///A/591" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,cap-donor,splayed-apart", "alpha": -81.278, "beta": 163.877, "gamma": 51.455, "delta": 146.892, "epsilon": -117.035, "zeta": -108.822, "epsilon_zeta": -8.214, "bb_type": "--", "chi": -159.677, "glyco_bond": "anti", "C5prime_xyz": [ -1.766, 8.559, 0.939 ], "P_xyz": [ 0.332, 8.492, 2.503 ], "form": ".", "ssZp": 1.348, "Dp": 1.378, "splay_angle": 115.503, "splay_distance": 16.114, "splay_ratio": 0.846, "d22": 11.189, "d64": 14.580, "eta": -159.638, "theta": -69.560, "eta_prime": -157.067, "theta_prime": -137.531, "eta_base": -146.370, "theta_base": -168.810, "v0": -20.340, "v1": 34.532, "v2": -34.759, "v3": 23.904, "v4": -2.418, "amplitude": 35.975, "phase_angle": 165.057, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4b", "suiteness": 0.754, "filter_rmsd": 0.100, "frame": { "rmsd": 0.008, "origin": [ 118.787, 148.379, 182.010 ], "x_axis": [ -0.211, -0.908, 0.363 ], "y_axis": [ 0.302, 0.293, 0.907 ], "z_axis": [ -0.930, 0.301, 0.212 ], "quaternion": [ 0.569, 0.267, -0.568, -0.531 ] } }, { "index": 589, "index_chain": 589, "chain_name": "A", "nt_resnum": 591, "nt_name": "U", "nt_code": "U", "nt_id": "///A/591", "linked_nts": [ "///A/590", "///A/592" ], "nt_type": "RNA", "dbn": "<", "summary": "pseudoknotted,turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart", "alpha": 89.989, "beta": -177.341, "gamma": 66.037, "delta": 145.011, "epsilon": -102.593, "zeta": -76.745, "epsilon_zeta": -25.848, "bb_type": "--", "chi": -99.119, "glyco_bond": "anti", "C5prime_xyz": [ -2.450, 7.989, -2.190 ], "P_xyz": [ -0.013, 8.848, -2.603 ], "form": ".", "ssZp": 0.858, "Dp": 1.052, "splay_angle": 135.419, "splay_distance": 17.084, "splay_ratio": 0.926, "d22": null, "d64": null, "eta": -17.441, "theta": -27.181, "eta_prime": 39.149, "theta_prime": -66.297, "eta_base": 37.298, "theta_base": -9.314, "v0": -23.119, "v1": 36.155, "v2": -34.726, "v3": 22.279, "v4": 0.346, "amplitude": 36.785, "phase_angle": 160.741, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4p", "suiteness": 0.127, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 122.415, 164.070, 181.470 ], "x_axis": [ 0.967, 0.012, 0.253 ], "y_axis": [ -0.076, -0.939, 0.334 ], "z_axis": [ 0.242, -0.342, -0.908 ], "quaternion": [ 0.173, 0.977, -0.016, 0.127 ] } }, { "index": 590, "index_chain": 590, "chain_name": "A", "nt_resnum": 592, "nt_name": "A", "nt_code": "A", "nt_id": "///A/592", "linked_nts": [ "///A/591", "///A/593" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 124.379, "beta": 158.382, "gamma": -68.110, "delta": 149.640, "epsilon": -151.496, "zeta": 177.566, "epsilon_zeta": 30.938, "bb_type": "--", "chi": 35.613, "glyco_bond": "syn", "C5prime_xyz": [ -5.477, 3.729, -0.176 ], "P_xyz": [ -7.586, 2.887, -1.486 ], "form": ".", "ssZp": -1.540, "Dp": 1.855, "splay_angle": 48.196, "splay_distance": 7.606, "splay_ratio": 0.416, "d22": null, "d64": null, "eta": -148.003, "theta": 141.022, "eta_prime": -100.740, "theta_prime": 106.819, "eta_base": -129.309, "theta_base": 149.639, "v0": -22.119, "v1": 37.363, "v2": -37.447, "v3": 25.640, "v4": -2.395, "amplitude": 38.816, "phase_angle": 164.738, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 116.343, 148.947, 186.598 ], "x_axis": [ -0.200, -0.955, 0.218 ], "y_axis": [ 0.014, -0.226, -0.974 ], "z_axis": [ 0.980, -0.192, 0.059 ], "quaternion": [ -0.398, 0.492, -0.478, 0.609 ] } }, { "index": 591, "index_chain": 591, "chain_name": "A", "nt_resnum": 593, "nt_name": "A", "nt_code": "A", "nt_id": "///A/593", "linked_nts": [ "///A/592", "///A/594" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 42.264, "beta": -104.998, "gamma": -156.967, "delta": 80.738, "epsilon": -112.866, "zeta": -106.787, "epsilon_zeta": -6.079, "bb_type": "--", "chi": 66.845, "glyco_bond": "syn", "C5prime_xyz": [ -5.177, 4.312, 2.055 ], "P_xyz": [ -4.762, 5.186, 4.483 ], "form": ".", "ssZp": -1.357, "Dp": 4.530, "splay_angle": 105.821, "splay_distance": 14.119, "splay_ratio": 0.802, "d22": null, "d64": null, "eta": 155.784, "theta": -142.418, "eta_prime": 129.251, "theta_prime": -153.140, "eta_base": -166.264, "theta_base": -170.531, "v0": -4.280, "v1": -18.516, "v2": 32.958, "v3": -36.355, "v4": 25.564, "amplitude": 36.418, "phase_angle": 25.178, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "4n", "suiteness": 0.067, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 118.924, 145.059, 180.591 ], "x_axis": [ 0.267, -0.098, 0.959 ], "y_axis": [ 0.420, 0.907, -0.024 ], "z_axis": [ -0.867, 0.409, 0.283 ], "quaternion": [ 0.784, -0.138, -0.583, -0.165 ] } }, { "index": 592, "index_chain": 592, "chain_name": "A", "nt_resnum": 594, "nt_name": "C", "nt_code": "C", "nt_id": "///A/594", "linked_nts": [ "///A/593", "///A/595" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BII,hairpin-loop,phosphate,splayed-apart", "alpha": 42.896, "beta": 120.804, "gamma": 138.745, "delta": 83.847, "epsilon": -102.897, "zeta": 135.146, "epsilon_zeta": 121.957, "bb_type": "BII", "chi": -140.993, "glyco_bond": "anti", "C5prime_xyz": [ -1.360, 8.722, -0.611 ], "P_xyz": [ -1.119, 9.413, -3.127 ], "form": ".", "ssZp": 3.070, "Dp": 4.659, "splay_angle": 133.876, "splay_distance": 19.593, "splay_ratio": 0.920, "d22": null, "d64": null, "eta": -39.052, "theta": 72.854, "eta_prime": -23.539, "theta_prime": 80.767, "eta_base": -52.988, "theta_base": 111.479, "v0": 1.646, "v1": -22.458, "v2": 33.475, "v3": -33.490, "v4": 20.153, "amplitude": 34.824, "phase_angle": 15.999, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.005, "origin": [ 124.224, 141.280, 168.063 ], "x_axis": [ 0.432, 0.638, -0.637 ], "y_axis": [ -0.132, 0.744, 0.655 ], "z_axis": [ 0.892, -0.199, 0.405 ], "quaternion": [ 0.803, 0.266, 0.476, 0.240 ] } }, { "index": 593, "index_chain": 593, "chain_name": "A", "nt_resnum": 595, "nt_name": "G", "nt_code": "G", "nt_id": "///A/595", "linked_nts": [ "///A/594", "///A/596" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor,splayed-apart", "alpha": 74.014, "beta": 159.613, "gamma": -116.075, "delta": 81.368, "epsilon": -149.972, "zeta": -66.738, "epsilon_zeta": -83.235, "bb_type": "BI", "chi": -171.963, "glyco_bond": "anti", "C5prime_xyz": [ -1.282, 8.587, 1.240 ], "P_xyz": [ -1.011, 11.080, 2.040 ], "form": "A", "ssZp": 4.624, "Dp": 4.645, "splay_angle": 22.685, "splay_distance": 3.681, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": -176.206, "theta": 170.990, "eta_prime": 162.331, "theta_prime": -173.186, "eta_base": 140.623, "theta_base": -136.317, "v0": 4.091, "v1": -25.944, "v2": 36.729, "v3": -35.311, "v4": 19.702, "amplitude": 37.615, "phase_angle": 12.460, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 124.028, 143.444, 187.535 ], "x_axis": [ 0.057, -0.985, -0.164 ], "y_axis": [ -0.099, 0.158, -0.982 ], "z_axis": [ 0.993, 0.072, -0.089 ], "quaternion": [ 0.531, -0.497, 0.545, -0.417 ] } }, { "index": 594, "index_chain": 594, "chain_name": "A", "nt_resnum": 596, "nt_name": "G", "nt_code": "G", "nt_id": "///A/596", "linked_nts": [ "///A/595", "///A/597" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor", "alpha": -72.423, "beta": -177.025, "gamma": 53.940, "delta": 81.556, "epsilon": -155.223, "zeta": -69.911, "epsilon_zeta": -85.312, "bb_type": "BI", "chi": -167.090, "glyco_bond": "anti", "C5prime_xyz": [ -1.596, 8.751, 0.925 ], "P_xyz": [ 0.841, 9.342, 1.685 ], "form": "A", "ssZp": 4.439, "Dp": 4.502, "splay_angle": 23.411, "splay_distance": 3.774, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 166.687, "theta": -148.728, "eta_prime": -179.721, "theta_prime": -146.895, "eta_base": -142.814, "theta_base": -122.856, "v0": -0.936, "v1": -21.190, "v2": 33.921, "v3": -35.404, "v4": 22.938, "amplitude": 36.108, "phase_angle": 20.044, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.921, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 127.238, 142.544, 189.097 ], "x_axis": [ -0.222, -0.738, -0.637 ], "y_axis": [ -0.095, 0.667, -0.739 ], "z_axis": [ 0.970, -0.104, -0.218 ], "quaternion": [ 0.554, -0.287, 0.726, -0.290 ] } }, { "index": 595, "index_chain": 595, "chain_name": "A", "nt_resnum": 597, "nt_name": "G", "nt_code": "G", "nt_id": "///A/597", "linked_nts": [ "///A/596", "///A/598" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -68.239, "beta": -174.634, "gamma": 46.342, "delta": 82.515, "epsilon": -178.320, "zeta": -83.721, "epsilon_zeta": -94.599, "bb_type": "BI", "chi": -162.396, "glyco_bond": "anti", "C5prime_xyz": [ -1.423, 8.764, 0.689 ], "P_xyz": [ 0.969, 9.306, 1.593 ], "form": "A", "ssZp": 4.206, "Dp": 4.278, "splay_angle": 20.816, "splay_distance": 3.264, "splay_ratio": 0.181, "d22": null, "d64": null, "eta": 165.816, "theta": -140.512, "eta_prime": 178.818, "theta_prime": -140.750, "eta_base": -144.183, "theta_base": -104.987, "v0": 0.105, "v1": -21.608, "v2": 33.646, "v3": -34.547, "v4": 21.753, "amplitude": 35.474, "phase_angle": 18.470, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.855, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 130.529, 140.722, 189.401 ], "x_axis": [ -0.465, -0.228, -0.855 ], "y_axis": [ 0.022, 0.963, -0.268 ], "z_axis": [ 0.885, -0.143, -0.443 ], "quaternion": [ 0.514, -0.061, 0.847, -0.121 ] } }, { "index": 596, "index_chain": 596, "chain_name": "A", "nt_resnum": 598, "nt_name": "U", "nt_code": "U", "nt_id": "///A/598", "linked_nts": [ "///A/597", "///A/599" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": 178.327, "beta": -130.913, "gamma": 139.427, "delta": 81.695, "epsilon": -108.013, "zeta": -125.809, "epsilon_zeta": 17.796, "bb_type": "--", "chi": -171.054, "glyco_bond": "anti", "C5prime_xyz": [ -1.733, 8.700, 1.116 ], "P_xyz": [ 0.723, 9.112, 0.351 ], "form": ".", "ssZp": 4.266, "Dp": 4.504, "splay_angle": 31.699, "splay_distance": 5.152, "splay_ratio": 0.273, "d22": null, "d64": null, "eta": 170.046, "theta": -117.826, "eta_prime": -174.872, "theta_prime": -121.644, "eta_base": -127.829, "theta_base": -84.773, "v0": -3.625, "v1": -18.736, "v2": 32.617, "v3": -35.663, "v4": 24.777, "amplitude": 35.789, "phase_angle": 24.301, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.009, "origin": [ 132.683, 139.205, 187.474 ], "x_axis": [ -0.366, 0.390, -0.845 ], "y_axis": [ 0.378, 0.892, 0.248 ], "z_axis": [ 0.850, -0.229, -0.474 ], "quaternion": [ 0.513, 0.232, 0.826, 0.006 ] } }, { "index": 597, "index_chain": 597, "chain_name": "A", "nt_resnum": 599, "nt_name": "G", "nt_code": "G", "nt_id": "///A/599", "linked_nts": [ "///A/598", "///A/600" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 111.601, "beta": -91.975, "gamma": -176.993, "delta": 85.855, "epsilon": -86.198, "zeta": -163.223, "epsilon_zeta": 77.025, "bb_type": "BII", "chi": 177.950, "glyco_bond": "anti", "C5prime_xyz": [ -1.751, 8.501, 1.720 ], "P_xyz": [ -0.171, 9.420, -0.153 ], "form": ".", "ssZp": 4.204, "Dp": 4.310, "splay_angle": 58.500, "splay_distance": 9.136, "splay_ratio": 0.489, "d22": null, "d64": null, "eta": -177.610, "theta": 135.426, "eta_prime": -158.276, "theta_prime": 149.034, "eta_base": -102.227, "theta_base": 156.057, "v0": -3.475, "v1": -17.385, "v2": 30.309, "v3": -33.129, "v4": 23.132, "amplitude": 33.287, "phase_angle": 24.419, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 135.287, 140.422, 183.198 ], "x_axis": [ -0.011, 0.905, -0.424 ], "y_axis": [ 0.566, 0.355, 0.744 ], "z_axis": [ 0.824, -0.232, -0.517 ], "quaternion": [ 0.455, 0.536, 0.686, 0.186 ] } }, { "index": 598, "index_chain": 598, "chain_name": "A", "nt_resnum": 600, "nt_name": "A", "nt_code": "A", "nt_id": "///A/600", "linked_nts": [ "///A/599", "///A/601" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -76.920, "beta": 146.044, "gamma": 43.341, "delta": 81.277, "epsilon": -113.634, "zeta": -69.740, "epsilon_zeta": -43.894, "bb_type": "--", "chi": -175.146, "glyco_bond": "anti", "C5prime_xyz": [ -1.691, 8.602, 1.354 ], "P_xyz": [ 0.859, 8.864, 1.906 ], "form": ".", "ssZp": 4.497, "Dp": 4.602, "splay_angle": 41.726, "splay_distance": 6.532, "splay_ratio": 0.356, "d22": null, "d64": null, "eta": -179.620, "theta": -110.767, "eta_prime": 169.580, "theta_prime": -105.275, "eta_base": 159.768, "theta_base": -62.670, "v0": -1.980, "v1": -20.146, "v2": 33.281, "v3": -35.376, "v4": 23.556, "amplitude": 35.820, "phase_angle": 21.703, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.010, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 138.470, 131.896, 184.001 ], "x_axis": [ -0.436, 0.762, -0.479 ], "y_axis": [ 0.387, 0.639, 0.665 ], "z_axis": [ 0.812, 0.104, -0.574 ], "quaternion": [ 0.397, 0.353, 0.814, 0.236 ] } }, { "index": 599, "index_chain": 599, "chain_name": "A", "nt_resnum": 601, "nt_name": "U", "nt_code": "U", "nt_id": "///A/601", "linked_nts": [ "///A/600", "///A/602" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -63.658, "beta": 156.572, "gamma": 68.024, "delta": 81.256, "epsilon": -148.905, "zeta": -79.014, "epsilon_zeta": -69.891, "bb_type": "BI", "chi": -162.808, "glyco_bond": "anti", "C5prime_xyz": [ -1.497, 8.700, 0.675 ], "P_xyz": [ 1.020, 9.130, 0.124 ], "form": "A", "ssZp": 4.483, "Dp": 4.625, "splay_angle": 28.555, "splay_distance": 4.416, "splay_ratio": 0.247, "d22": null, "d64": null, "eta": 159.882, "theta": -149.246, "eta_prime": -167.194, "theta_prime": -151.424, "eta_base": -99.477, "theta_base": -130.707, "v0": 1.273, "v1": -23.845, "v2": 36.026, "v3": -36.269, "v4": 22.059, "amplitude": 37.608, "phase_angle": 16.674, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.278, "filter_rmsd": 0.098, "frame": { "rmsd": 0.009, "origin": [ 141.108, 136.990, 180.877 ], "x_axis": [ 0.120, 0.905, 0.408 ], "y_axis": [ 0.558, -0.401, 0.727 ], "z_axis": [ 0.821, 0.141, -0.553 ], "quaternion": [ 0.203, 0.720, 0.508, 0.427 ] } }, { "index": 600, "index_chain": 600, "chain_name": "A", "nt_resnum": 602, "nt_name": "G", "nt_code": "G", "nt_id": "///A/602", "linked_nts": [ "///A/601", "///A/603" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -84.065, "beta": -176.032, "gamma": 61.393, "delta": 83.616, "epsilon": -159.680, "zeta": -70.848, "epsilon_zeta": -88.832, "bb_type": "BI", "chi": -173.070, "glyco_bond": "anti", "C5prime_xyz": [ -1.372, 8.531, 1.293 ], "P_xyz": [ 1.161, 8.773, 1.904 ], "form": "A", "ssZp": 4.515, "Dp": 4.535, "splay_angle": 23.471, "splay_distance": 3.682, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 163.418, "theta": -149.109, "eta_prime": 172.568, "theta_prime": -148.084, "eta_base": -152.036, "theta_base": -132.173, "v0": 3.199, "v1": -24.500, "v2": 35.266, "v3": -34.382, "v4": 19.656, "amplitude": 36.290, "phase_angle": 13.640, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.628, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 143.887, 138.652, 177.875 ], "x_axis": [ -0.024, 0.421, 0.907 ], "y_axis": [ 0.306, -0.861, 0.407 ], "z_axis": [ 0.952, 0.287, -0.108 ], "quaternion": [ 0.043, 0.697, 0.260, 0.667 ] } }, { "index": 601, "index_chain": 601, "chain_name": "A", "nt_resnum": 603, "nt_name": "G", "nt_code": "G", "nt_id": "///A/603", "linked_nts": [ "///A/602", "///A/604" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -77.238, "beta": -174.510, "gamma": 61.458, "delta": 85.104, "epsilon": -152.685, "zeta": -65.642, "epsilon_zeta": -87.042, "bb_type": "BI", "chi": -164.982, "glyco_bond": "anti", "C5prime_xyz": [ -1.444, 8.713, 0.842 ], "P_xyz": [ 1.081, 9.062, 1.471 ], "form": "A", "ssZp": 4.367, "Dp": 4.475, "splay_angle": 21.309, "splay_distance": 3.393, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": 173.425, "theta": -137.756, "eta_prime": -176.203, "theta_prime": -137.345, "eta_base": -149.007, "theta_base": -100.991, "v0": 0.458, "v1": -20.867, "v2": 32.101, "v3": -32.729, "v4": 20.405, "amplitude": 33.724, "phase_angle": 17.847, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.731, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 145.998, 141.314, 176.455 ], "x_axis": [ 0.053, -0.079, 0.996 ], "y_axis": [ 0.300, -0.949, -0.091 ], "z_axis": [ 0.952, 0.304, -0.026 ], "quaternion": [ -0.139, 0.712, 0.078, 0.684 ] } }, { "index": 602, "index_chain": 602, "chain_name": "A", "nt_resnum": 604, "nt_name": "C", "nt_code": "C", "nt_id": "///A/604", "linked_nts": [ "///A/603", "///A/605" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack", "alpha": -75.998, "beta": 179.337, "gamma": 56.028, "delta": 83.058, "epsilon": -154.144, "zeta": -67.554, "epsilon_zeta": -86.590, "bb_type": "BI", "chi": -152.455, "glyco_bond": "anti", "C5prime_xyz": [ -1.261, 8.787, 0.071 ], "P_xyz": [ 1.327, 9.184, 0.151 ], "form": ".", "ssZp": 4.183, "Dp": 4.553, "splay_angle": 25.495, "splay_distance": 4.033, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": 163.493, "theta": -142.406, "eta_prime": -179.698, "theta_prime": -140.657, "eta_base": -127.286, "theta_base": -104.269, "v0": 1.519, "v1": -23.102, "v2": 34.604, "v3": -34.654, "v4": 20.930, "amplitude": 36.036, "phase_angle": 16.211, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.855, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 148.743, 142.844, 177.735 ], "x_axis": [ 0.214, -0.686, 0.695 ], "y_axis": [ 0.317, -0.624, -0.714 ], "z_axis": [ 0.924, 0.373, 0.084 ], "quaternion": [ -0.410, 0.662, -0.139, 0.611 ] } }, { "index": 603, "index_chain": 603, "chain_name": "A", "nt_resnum": 605, "nt_name": "G", "nt_code": "G", "nt_id": "///A/605", "linked_nts": [ "///A/604", "///A/606" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -68.571, "beta": 168.354, "gamma": 62.707, "delta": 82.206, "epsilon": -117.319, "zeta": -118.402, "epsilon_zeta": 1.083, "bb_type": "--", "chi": -154.220, "glyco_bond": "anti", "C5prime_xyz": [ -1.218, 8.753, 0.172 ], "P_xyz": [ 1.358, 8.984, -0.256 ], "form": ".", "ssZp": 4.025, "Dp": 4.759, "splay_angle": 110.857, "splay_distance": 15.688, "splay_ratio": 0.823, "d22": null, "d64": null, "eta": 176.979, "theta": -140.541, "eta_prime": -168.134, "theta_prime": -152.198, "eta_base": -120.295, "theta_base": -128.072, "v0": 3.472, "v1": -25.273, "v2": 36.235, "v3": -35.220, "v4": 20.056, "amplitude": 37.246, "phase_angle": 13.382, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.826, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 152.405, 142.980, 179.420 ], "x_axis": [ 0.362, -0.927, 0.096 ], "y_axis": [ 0.202, -0.022, -0.979 ], "z_axis": [ 0.910, 0.374, 0.179 ], "quaternion": [ 0.616, -0.549, 0.330, -0.458 ] } }, { "index": 604, "index_chain": 604, "chain_name": "A", "nt_resnum": 606, "nt_name": "U", "nt_code": "U", "nt_id": "///A/606", "linked_nts": [ "///A/605", "///A/607" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C2'-endo,non-stack,isolated-canonical,non-pair-contact,multiplet,junction-loop,cap-acceptor,splayed-apart", "alpha": 56.041, "beta": -177.168, "gamma": 47.594, "delta": 145.237, "epsilon": -164.768, "zeta": 137.969, "epsilon_zeta": 57.263, "bb_type": "--", "chi": -111.310, "glyco_bond": "anti", "C5prime_xyz": [ -2.216, 8.313, -1.664 ], "P_xyz": [ 0.065, 9.548, -1.296 ], "form": ".", "ssZp": 2.139, "Dp": 2.122, "splay_angle": 99.913, "splay_distance": 15.681, "splay_ratio": 0.767, "d22": null, "d64": null, "eta": -84.907, "theta": 137.203, "eta_prime": -59.473, "theta_prime": 135.709, "eta_base": -87.348, "theta_base": 161.148, "v0": -22.731, "v1": 36.151, "v2": -35.012, "v3": 22.772, "v4": -0.251, "amplitude": 36.900, "phase_angle": 161.593, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "7p", "suiteness": 0.571, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 166.146, 148.290, 174.027 ], "x_axis": [ 0.305, -0.635, -0.709 ], "y_axis": [ -0.945, -0.109, -0.308 ], "z_axis": [ 0.118, 0.764, -0.634 ], "quaternion": [ -0.375, 0.716, -0.552, -0.207 ] } }, { "index": 605, "index_chain": 605, "chain_name": "A", "nt_resnum": 607, "nt_name": "G", "nt_code": "G", "nt_id": "///A/607", "linked_nts": [ "///A/606", "///A/608" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart", "alpha": 74.610, "beta": 153.526, "gamma": -75.501, "delta": 83.937, "epsilon": -159.653, "zeta": -63.611, "epsilon_zeta": -96.042, "bb_type": "BI", "chi": -173.549, "glyco_bond": "anti", "C5prime_xyz": [ -1.584, 8.608, 1.314 ], "P_xyz": [ -1.289, 10.428, 3.164 ], "form": "A", "ssZp": 4.354, "Dp": 4.426, "splay_angle": 23.514, "splay_distance": 3.692, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": -164.975, "theta": -179.217, "eta_prime": 157.200, "theta_prime": -163.377, "eta_base": 145.982, "theta_base": -116.968, "v0": -0.254, "v1": -21.001, "v2": 32.905, "v3": -34.006, "v4": 21.644, "amplitude": 34.805, "phase_angle": 19.016, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 159.820, 160.740, 181.160 ], "x_axis": [ 0.966, -0.216, 0.143 ], "y_axis": [ -0.150, -0.916, -0.372 ], "z_axis": [ 0.212, 0.338, -0.917 ], "quaternion": [ -0.182, 0.975, -0.094, 0.091 ] } }, { "index": 606, "index_chain": 606, "chain_name": "A", "nt_resnum": 608, "nt_name": "C", "nt_code": "C", "nt_id": "///A/608", "linked_nts": [ "///A/607", "///A/609" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,A-minor,phosphate", "alpha": -84.205, "beta": -168.074, "gamma": 57.218, "delta": 84.967, "epsilon": -154.387, "zeta": -64.467, "epsilon_zeta": -89.920, "bb_type": "BI", "chi": -159.100, "glyco_bond": "anti", "C5prime_xyz": [ -1.226, 8.751, 0.503 ], "P_xyz": [ 1.288, 9.061, 1.181 ], "form": "A", "ssZp": 4.279, "Dp": 4.482, "splay_angle": 23.128, "splay_distance": 3.750, "splay_ratio": 0.201, "d22": 4.283, "d64": 4.370, "eta": 167.565, "theta": -139.352, "eta_prime": -179.099, "theta_prime": -138.543, "eta_base": -135.226, "theta_base": -111.162, "v0": 1.470, "v1": -22.085, "v2": 33.129, "v3": -33.180, "v4": 20.027, "amplitude": 34.501, "phase_angle": 16.216, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.586, "filter_rmsd": 0.063, "frame": { "rmsd": 0.007, "origin": [ 161.388, 163.060, 178.753 ], "x_axis": [ 0.631, -0.772, -0.073 ], "y_axis": [ -0.736, -0.567, -0.370 ], "z_axis": [ 0.245, 0.287, -0.926 ], "quaternion": [ -0.186, 0.884, -0.427, 0.049 ] } }, { "index": 607, "index_chain": 607, "chain_name": "A", "nt_resnum": 609, "nt_name": "C", "nt_code": "C", "nt_id": "///A/609", "linked_nts": [ "///A/608", "///A/610" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -75.836, "beta": 174.697, "gamma": 61.086, "delta": 80.226, "epsilon": -153.317, "zeta": -67.683, "epsilon_zeta": -85.634, "bb_type": "BI", "chi": -159.086, "glyco_bond": "anti", "C5prime_xyz": [ -1.518, 8.822, 0.436 ], "P_xyz": [ 1.016, 9.431, 0.405 ], "form": "A", "ssZp": 4.380, "Dp": 4.573, "splay_angle": 26.879, "splay_distance": 4.310, "splay_ratio": 0.234, "d22": 3.950, "d64": 4.107, "eta": 164.711, "theta": -144.480, "eta_prime": -178.209, "theta_prime": -142.663, "eta_base": -134.742, "theta_base": -113.898, "v0": -0.695, "v1": -22.338, "v2": 35.509, "v3": -36.897, "v4": 23.719, "amplitude": 37.700, "phase_angle": 19.627, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.803, "filter_rmsd": 0.058, "frame": { "rmsd": 0.010, "origin": [ 163.656, 163.889, 175.884 ], "x_axis": [ 0.120, -0.969, -0.214 ], "y_axis": [ -0.947, -0.046, -0.319 ], "z_axis": [ 0.300, 0.241, -0.923 ], "quaternion": [ -0.194, 0.723, -0.663, 0.029 ] } }, { "index": 608, "index_chain": 608, "chain_name": "A", "nt_resnum": 610, "nt_name": "U", "nt_code": "U", "nt_id": "///A/610", "linked_nts": [ "///A/609", "///A/611" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop", "alpha": -68.822, "beta": 175.774, "gamma": 64.390, "delta": 86.430, "epsilon": -146.265, "zeta": -64.845, "epsilon_zeta": -81.420, "bb_type": "BI", "chi": -164.831, "glyco_bond": "anti", "C5prime_xyz": [ -1.670, 8.775, 0.766 ], "P_xyz": [ 0.813, 9.325, 1.376 ], "form": ".", "ssZp": 4.075, "Dp": 4.267, "splay_angle": 24.380, "splay_distance": 4.001, "splay_ratio": 0.211, "d22": 4.192, "d64": 3.889, "eta": 178.375, "theta": -131.381, "eta_prime": -166.210, "theta_prime": -131.999, "eta_base": -125.890, "theta_base": -93.518, "v0": -4.891, "v1": -15.238, "v2": 28.210, "v3": -31.872, "v4": 23.238, "amplitude": 31.739, "phase_angle": 27.275, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.744, "filter_rmsd": 0.101, "frame": { "rmsd": 0.011, "origin": [ 165.944, 163.221, 172.293 ], "x_axis": [ -0.519, -0.853, -0.053 ], "y_axis": [ -0.849, 0.522, -0.080 ], "z_axis": [ 0.096, 0.004, -0.995 ], "quaternion": [ 0.043, -0.488, 0.871, -0.022 ] } }, { "index": 609, "index_chain": 609, "chain_name": "A", "nt_resnum": 611, "nt_name": "U", "nt_code": "U", "nt_id": "///A/611", "linked_nts": [ "///A/610", "///A/612" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": -67.832, "beta": 176.763, "gamma": 44.110, "delta": 81.952, "epsilon": -178.325, "zeta": -82.530, "epsilon_zeta": -95.796, "bb_type": "BI", "chi": -152.727, "glyco_bond": "anti", "C5prime_xyz": [ -1.556, 8.789, 0.076 ], "P_xyz": [ 0.920, 9.512, 0.469 ], "form": "A", "ssZp": 4.108, "Dp": 4.289, "splay_angle": 23.415, "splay_distance": 3.748, "splay_ratio": 0.204, "d22": 4.136, "d64": 4.239, "eta": 155.856, "theta": -141.118, "eta_prime": 178.272, "theta_prime": -145.135, "eta_base": -123.899, "theta_base": -112.396, "v0": -1.128, "v1": -20.736, "v2": 33.423, "v3": -35.018, "v4": 22.816, "amplitude": 35.656, "phase_angle": 20.386, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.794, "filter_rmsd": 0.101, "frame": { "rmsd": 0.009, "origin": [ 165.728, 161.710, 168.594 ], "x_axis": [ -0.963, -0.268, 0.036 ], "y_axis": [ -0.269, 0.963, -0.030 ], "z_axis": [ -0.026, -0.039, -0.999 ], "quaternion": [ -0.016, -0.136, 0.990, -0.017 ] } }, { "index": 610, "index_chain": 610, "chain_name": "A", "nt_resnum": 612, "nt_name": "U", "nt_code": "U", "nt_id": "///A/612", "linked_nts": [ "///A/611", "///A/613" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor,phosphate", "alpha": 167.917, "beta": -140.644, "gamma": 153.962, "delta": 81.630, "epsilon": -114.723, "zeta": -101.862, "epsilon_zeta": -12.861, "bb_type": "--", "chi": -174.987, "glyco_bond": "anti", "C5prime_xyz": [ -1.437, 8.507, 1.413 ], "P_xyz": [ 0.774, 9.344, 0.303 ], "form": ".", "ssZp": 4.581, "Dp": 4.694, "splay_angle": 73.579, "splay_distance": 11.070, "splay_ratio": 0.599, "d22": 8.972, "d64": 11.238, "eta": 167.899, "theta": -117.127, "eta_prime": -177.139, "theta_prime": -160.644, "eta_base": -129.362, "theta_base": 142.064, "v0": 1.653, "v1": -23.197, "v2": 34.761, "v3": -34.822, "v4": 20.905, "amplitude": 36.180, "phase_angle": 16.099, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.116, "filter_rmsd": 0.105, "frame": { "rmsd": 0.007, "origin": [ 164.645, 160.409, 165.250 ], "x_axis": [ -0.945, 0.326, 0.028 ], "y_axis": [ 0.322, 0.943, -0.087 ], "z_axis": [ -0.055, -0.074, -0.996 ], "quaternion": [ -0.021, 0.164, 0.985, -0.041 ] } }, { "index": 611, "index_chain": 611, "chain_name": "A", "nt_resnum": 613, "nt_name": "U", "nt_code": "U", "nt_id": "///A/613", "linked_nts": [ "///A/612", "///A/614" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop", "alpha": 152.217, "beta": -157.372, "gamma": 53.901, "delta": 85.960, "epsilon": -151.104, "zeta": -66.362, "epsilon_zeta": -84.742, "bb_type": "BI", "chi": -156.487, "glyco_bond": "anti", "C5prime_xyz": [ -1.534, 8.747, 0.317 ], "P_xyz": [ 0.812, 9.339, 1.306 ], "form": ".", "ssZp": 4.152, "Dp": 4.422, "splay_angle": 27.427, "splay_distance": 4.342, "splay_ratio": 0.238, "d22": null, "d64": null, "eta": 25.183, "theta": -137.923, "eta_prime": 50.348, "theta_prime": -132.861, "eta_base": 25.839, "theta_base": -85.997, "v0": -1.491, "v1": -18.882, "v2": 30.772, "v3": -32.549, "v4": 21.519, "amplitude": 32.999, "phase_angle": 21.170, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.075, "filter_rmsd": 0.101, "frame": { "rmsd": 0.009, "origin": [ 174.631, 157.733, 161.292 ], "x_axis": [ 0.672, 0.592, 0.445 ], "y_axis": [ -0.513, 0.805, -0.297 ], "z_axis": [ -0.535, -0.029, 0.845 ], "quaternion": [ 0.911, -0.074, -0.269, 0.303 ] } }, { "index": 612, "index_chain": 612, "chain_name": "A", "nt_resnum": 614, "nt_name": "G", "nt_code": "G", "nt_id": "///A/614", "linked_nts": [ "///A/613", "///A/615" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,cap-donor,phosphate", "alpha": -72.963, "beta": 175.144, "gamma": 58.351, "delta": 84.692, "epsilon": -127.813, "zeta": -104.038, "epsilon_zeta": -23.775, "bb_type": "--", "chi": -146.542, "glyco_bond": "anti", "C5prime_xyz": [ -1.127, 8.707, -0.274 ], "P_xyz": [ 1.465, 8.866, -0.571 ], "form": ".", "ssZp": 3.770, "Dp": 4.711, "splay_angle": 44.364, "splay_distance": 7.724, "splay_ratio": 0.381, "d22": null, "d64": null, "eta": 172.091, "theta": -135.041, "eta_prime": -171.177, "theta_prime": -137.566, "eta_base": -115.142, "theta_base": -139.936, "v0": 3.529, "v1": -24.049, "v2": 34.262, "v3": -33.167, "v4": 18.754, "amplitude": 35.163, "phase_angle": 12.999, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.865, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 173.855, 159.365, 165.240 ], "x_axis": [ 0.075, 0.995, 0.064 ], "y_axis": [ -0.899, 0.095, -0.427 ], "z_axis": [ -0.431, -0.025, 0.902 ], "quaternion": [ 0.720, -0.140, -0.172, 0.658 ] } }, { "index": 613, "index_chain": 613, "chain_name": "A", "nt_resnum": 615, "nt_name": "U", "nt_code": "U", "nt_id": "///A/615", "linked_nts": [ "///A/614", "///A/616" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C2'-endo,BI,non-pair-contact,hairpin-loop,phosphate", "alpha": 66.472, "beta": -155.459, "gamma": -56.286, "delta": 156.275, "epsilon": -155.135, "zeta": -74.144, "epsilon_zeta": -80.991, "bb_type": "BI", "chi": -107.083, "glyco_bond": "anti", "C5prime_xyz": [ -1.547, 8.033, -1.691 ], "P_xyz": [ -0.750, 10.404, -2.418 ], "form": ".", "ssZp": 1.615, "Dp": 1.732, "splay_angle": 67.630, "splay_distance": 10.271, "splay_ratio": 0.560, "d22": null, "d64": null, "eta": -138.534, "theta": -121.131, "eta_prime": -128.369, "theta_prime": -169.317, "eta_base": -137.477, "theta_base": 146.660, "v0": -11.921, "v1": 30.733, "v2": -36.751, "v3": 30.835, "v4": -12.089, "amplitude": 36.751, "phase_angle": 180.137, "puckering": "C3'-exo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "7r", "suiteness": 0.663, "filter_rmsd": 0.102, "frame": { "rmsd": 0.006, "origin": [ 171.676, 159.083, 172.645 ], "x_axis": [ 0.070, 0.993, -0.092 ], "y_axis": [ -0.826, 0.006, -0.564 ], "z_axis": [ -0.560, 0.115, 0.820 ], "quaternion": [ 0.688, -0.247, -0.170, 0.660 ] } }, { "index": 614, "index_chain": 614, "chain_name": "A", "nt_resnum": 616, "nt_name": "A", "nt_code": "A", "nt_id": "///A/616", "linked_nts": [ "///A/615", "///A/617" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop", "alpha": 169.639, "beta": 135.341, "gamma": 35.391, "delta": 84.577, "epsilon": 170.965, "zeta": 35.549, "epsilon_zeta": 135.416, "bb_type": "--", "chi": -172.017, "glyco_bond": "anti", "C5prime_xyz": [ -1.441, 8.551, 1.266 ], "P_xyz": [ 1.077, 8.222, 1.928 ], "form": ".", "ssZp": 3.981, "Dp": 4.103, "splay_angle": 26.871, "splay_distance": 4.796, "splay_ratio": 0.250, "d22": null, "d64": null, "eta": -3.680, "theta": -83.199, "eta_prime": 41.627, "theta_prime": -101.805, "eta_base": 52.921, "theta_base": -74.298, "v0": 0.355, "v1": -20.570, "v2": 31.738, "v3": -32.487, "v4": 20.296, "amplitude": 33.383, "phase_angle": 18.064, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2g", "suiteness": 0.010, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 169.188, 149.259, 174.313 ], "x_axis": [ 0.231, -0.351, -0.907 ], "y_axis": [ -0.820, 0.431, -0.376 ], "z_axis": [ 0.524, 0.831, -0.188 ], "quaternion": [ 0.607, -0.497, 0.589, 0.193 ] } }, { "index": 615, "index_chain": 615, "chain_name": "A", "nt_resnum": 617, "nt_name": "G", "nt_code": "G", "nt_id": "///A/617", "linked_nts": [ "///A/616", "///A/618" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate", "alpha": -162.053, "beta": 89.079, "gamma": 173.262, "delta": 145.910, "epsilon": -86.825, "zeta": -91.877, "epsilon_zeta": 5.053, "bb_type": "--", "chi": -170.683, "glyco_bond": "anti", "C5prime_xyz": [ -1.780, 8.332, 1.545 ], "P_xyz": [ -0.990, 10.448, 0.239 ], "form": ".", "ssZp": 0.998, "Dp": 0.960, "splay_angle": 78.497, "splay_distance": 12.002, "splay_ratio": 0.635, "d22": null, "d64": null, "eta": -127.952, "theta": -120.286, "eta_prime": -121.398, "theta_prime": -148.277, "eta_base": -72.205, "theta_base": 171.318, "v0": -17.696, "v1": 31.913, "v2": -33.133, "v3": 23.791, "v4": -4.060, "amplitude": 33.879, "phase_angle": 167.955, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 172.439, 150.649, 171.073 ], "x_axis": [ -0.348, 0.078, -0.934 ], "y_axis": [ -0.745, 0.582, 0.326 ], "z_axis": [ 0.569, 0.810, -0.144 ], "quaternion": [ 0.522, -0.232, 0.720, 0.394 ] } }, { "index": 616, "index_chain": 616, "chain_name": "A", "nt_resnum": 618, "nt_name": "A", "nt_code": "A", "nt_id": "///A/618", "linked_nts": [ "///A/617", "///A/619" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 97.347, "beta": -144.532, "gamma": 79.891, "delta": 148.871, "epsilon": -147.656, "zeta": 107.550, "epsilon_zeta": 104.793, "bb_type": "--", "chi": -119.258, "glyco_bond": "anti", "C5prime_xyz": [ -1.733, 8.432, -1.196 ], "P_xyz": [ 0.675, 8.800, -0.214 ], "form": ".", "ssZp": 1.755, "Dp": 1.808, "splay_angle": 132.570, "splay_distance": 18.710, "splay_ratio": 0.916, "d22": null, "d64": null, "eta": -13.910, "theta": 98.377, "eta_prime": 60.972, "theta_prime": 39.370, "eta_base": 63.080, "theta_base": 0.667, "v0": -17.699, "v1": 32.897, "v2": -34.749, "v3": 25.393, "v4": -5.012, "amplitude": 35.363, "phase_angle": 169.309, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.036, "frame": { "rmsd": 0.004, "origin": [ 175.858, 150.932, 182.574 ], "x_axis": [ -0.706, -0.630, 0.322 ], "y_axis": [ -0.703, 0.569, -0.427 ], "z_axis": [ 0.086, -0.528, -0.845 ], "quaternion": [ -0.067, -0.377, 0.883, -0.271 ] } }, { "index": 617, "index_chain": 617, "chain_name": "A", "nt_resnum": 619, "nt_name": "A", "nt_code": "A", "nt_id": "///A/619", "linked_nts": [ "///A/618", "///A/620" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop,cap-donor,phosphate,splayed-apart", "alpha": -41.648, "beta": -162.663, "gamma": -169.602, "delta": 81.492, "epsilon": -149.520, "zeta": -73.840, "epsilon_zeta": -75.679, "bb_type": "BI", "chi": -167.485, "glyco_bond": "anti", "C5prime_xyz": [ -1.473, 8.660, 0.961 ], "P_xyz": [ -0.345, 10.623, -0.370 ], "form": ".", "ssZp": 4.512, "Dp": 4.588, "splay_angle": 26.821, "splay_distance": 4.457, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": 24.927, "theta": -179.995, "eta_prime": 41.935, "theta_prime": -173.132, "eta_base": 82.996, "theta_base": -157.364, "v0": 0.913, "v1": -22.951, "v2": 35.039, "v3": -35.472, "v4": 21.799, "amplitude": 36.682, "phase_angle": 17.212, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.006, "origin": [ 165.825, 163.173, 172.595 ], "x_axis": [ -0.546, -0.838, 0.019 ], "y_axis": [ 0.789, -0.506, 0.348 ], "z_axis": [ -0.282, 0.204, 0.937 ], "quaternion": [ -0.470, -0.076, 0.160, 0.865 ] } }, { "index": 618, "index_chain": 618, "chain_name": "A", "nt_resnum": 620, "nt_name": "U", "nt_code": "U", "nt_id": "///A/620", "linked_nts": [ "///A/619", "///A/621" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -61.369, "beta": 178.417, "gamma": 53.453, "delta": 77.991, "epsilon": -146.180, "zeta": -61.070, "epsilon_zeta": -85.111, "bb_type": "BI", "chi": -155.757, "glyco_bond": "anti", "C5prime_xyz": [ -1.842, 8.876, 0.214 ], "P_xyz": [ 0.580, 9.852, 0.411 ], "form": "A", "ssZp": 4.243, "Dp": 4.566, "splay_angle": 24.930, "splay_distance": 4.068, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 174.678, "theta": -135.781, "eta_prime": -175.706, "theta_prime": -132.469, "eta_base": -155.475, "theta_base": -94.008, "v0": -3.238, "v1": -20.515, "v2": 35.087, "v3": -37.949, "v4": 25.944, "amplitude": 38.217, "phase_angle": 23.349, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.960, "filter_rmsd": 0.102, "frame": { "rmsd": 0.006, "origin": [ 162.895, 165.361, 175.142 ], "x_axis": [ -0.204, -0.971, 0.124 ], "y_axis": [ 0.922, -0.148, 0.359 ], "z_axis": [ -0.330, 0.187, 0.925 ], "quaternion": [ 0.627, 0.068, -0.181, -0.755 ] } }, { "index": 619, "index_chain": 619, "chain_name": "A", "nt_resnum": 621, "nt_name": "G", "nt_code": "G", "nt_id": "///A/621", "linked_nts": [ "///A/620", "///A/622" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,A-minor", "alpha": -80.565, "beta": -163.740, "gamma": 47.307, "delta": 83.046, "epsilon": -160.540, "zeta": -84.028, "epsilon_zeta": -76.511, "bb_type": "BI", "chi": -136.713, "glyco_bond": "anti", "C5prime_xyz": [ -1.366, 8.741, -0.836 ], "P_xyz": [ 1.135, 9.497, -0.598 ], "form": ".", "ssZp": 3.580, "Dp": 4.449, "splay_angle": 20.145, "splay_distance": 3.303, "splay_ratio": 0.179, "d22": null, "d64": null, "eta": 160.361, "theta": -165.324, "eta_prime": 175.878, "theta_prime": -163.153, "eta_base": -135.262, "theta_base": -145.832, "v0": 0.663, "v1": -21.788, "v2": 33.374, "v3": -33.923, "v4": 21.026, "amplitude": 35.004, "phase_angle": 17.557, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.618, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 161.300, 163.265, 178.242 ], "x_axis": [ 0.641, -0.759, -0.117 ], "y_axis": [ 0.728, 0.552, 0.407 ], "z_axis": [ -0.244, -0.346, 0.906 ], "quaternion": [ 0.880, 0.214, -0.036, -0.422 ] } }, { "index": 620, "index_chain": 620, "chain_name": "A", "nt_resnum": 622, "nt_name": "A", "nt_code": "A", "nt_id": "///A/622", "linked_nts": [ "///A/621", "///A/623" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart", "alpha": -60.946, "beta": 161.277, "gamma": 56.186, "delta": 83.691, "epsilon": -96.585, "zeta": -111.109, "epsilon_zeta": 14.524, "bb_type": "--", "chi": -139.267, "glyco_bond": "anti", "C5prime_xyz": [ -1.266, 8.637, -0.718 ], "P_xyz": [ 1.246, 8.676, -1.459 ], "form": ".", "ssZp": 2.860, "Dp": 4.684, "splay_angle": 130.526, "splay_distance": 17.219, "splay_ratio": 0.908, "d22": null, "d64": null, "eta": -176.417, "theta": -109.814, "eta_prime": -172.515, "theta_prime": -139.567, "eta_base": -154.746, "theta_base": -173.259, "v0": 2.598, "v1": -23.850, "v2": 34.821, "v3": -34.238, "v4": 20.013, "amplitude": 35.974, "phase_angle": 14.544, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.778, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 160.109, 162.445, 181.212 ], "x_axis": [ 0.852, -0.521, 0.044 ], "y_axis": [ 0.397, 0.699, 0.594 ], "z_axis": [ -0.341, -0.489, 0.803 ], "quaternion": [ 0.916, 0.296, -0.105, -0.251 ] } }, { "index": 621, "index_chain": 621, "chain_name": "A", "nt_resnum": 623, "nt_name": "A", "nt_code": "A", "nt_id": "///A/623", "linked_nts": [ "///A/622", "///A/624" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor,splayed-apart", "alpha": 76.236, "beta": -163.771, "gamma": 53.317, "delta": 84.842, "epsilon": -140.945, "zeta": -76.994, "epsilon_zeta": -63.951, "bb_type": "BI", "chi": -177.038, "glyco_bond": "anti", "C5prime_xyz": [ -1.325, 8.462, 1.552 ], "P_xyz": [ 0.873, 8.466, 2.983 ], "form": "A", "ssZp": 4.480, "Dp": 4.540, "splay_angle": 24.476, "splay_distance": 3.825, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": -47.373, "theta": -141.229, "eta_prime": -23.970, "theta_prime": -136.252, "eta_base": -14.181, "theta_base": -106.368, "v0": 1.092, "v1": -21.506, "v2": 32.556, "v3": -32.842, "v4": 20.069, "amplitude": 34.013, "phase_angle": 16.833, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7d", "suiteness": 0.497, "filter_rmsd": 0.046, "frame": { "rmsd": 0.017, "origin": [ 156.762, 169.203, 196.691 ], "x_axis": [ 0.552, 0.822, 0.143 ], "y_axis": [ 0.668, -0.333, -0.665 ], "z_axis": [ -0.499, 0.463, -0.733 ], "quaternion": [ -0.348, 0.809, 0.460, -0.110 ] } }, { "index": 622, "index_chain": 622, "chain_name": "A", "nt_resnum": 624, "nt_name": "C", "nt_code": "C", "nt_id": "///A/624", "linked_nts": [ "///A/623", "///A/625" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper,phosphate", "alpha": -64.298, "beta": 171.724, "gamma": 51.727, "delta": 83.540, "epsilon": -154.873, "zeta": -71.284, "epsilon_zeta": -83.588, "bb_type": "BI", "chi": -166.431, "glyco_bond": "anti", "C5prime_xyz": [ -1.324, 8.668, 0.922 ], "P_xyz": [ 1.219, 8.940, 1.424 ], "form": "A", "ssZp": 4.451, "Dp": 4.532, "splay_angle": 21.635, "splay_distance": 3.424, "splay_ratio": 0.189, "d22": 4.468, "d64": 4.363, "eta": 164.916, "theta": -145.940, "eta_prime": -178.942, "theta_prime": -146.328, "eta_base": -135.475, "theta_base": -123.138, "v0": 1.777, "v1": -23.201, "v2": 34.551, "v3": -34.482, "v4": 20.649, "amplitude": 35.913, "phase_angle": 15.831, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.927, "filter_rmsd": 0.060, "frame": { "rmsd": 0.009, "origin": [ 154.241, 171.607, 195.110 ], "x_axis": [ 0.853, 0.459, -0.248 ], "y_axis": [ 0.244, -0.772, -0.587 ], "z_axis": [ -0.461, 0.440, -0.770 ], "quaternion": [ -0.279, 0.921, 0.191, -0.193 ] } }, { "index": 623, "index_chain": 623, "chain_name": "A", "nt_resnum": 625, "nt_name": "C", "nt_code": "C", "nt_id": "///A/625", "linked_nts": [ "///A/624", "///A/626" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper,phosphate", "alpha": -67.279, "beta": 176.732, "gamma": 52.505, "delta": 81.039, "epsilon": -144.583, "zeta": -72.648, "epsilon_zeta": -71.935, "bb_type": "BI", "chi": -160.907, "glyco_bond": "anti", "C5prime_xyz": [ -1.217, 8.752, 0.585 ], "P_xyz": [ 1.346, 9.122, 0.931 ], "form": "A", "ssZp": 4.404, "Dp": 4.631, "splay_angle": 21.558, "splay_distance": 3.498, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": 168.913, "theta": -143.404, "eta_prime": -179.804, "theta_prime": -143.264, "eta_base": -142.913, "theta_base": -120.403, "v0": 1.612, "v1": -23.853, "v2": 35.822, "v3": -35.860, "v4": 21.619, "amplitude": 37.302, "phase_angle": 16.192, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.958, "filter_rmsd": 0.063, "frame": { "rmsd": 0.009, "origin": [ 152.742, 174.281, 193.585 ], "x_axis": [ 0.867, -0.047, -0.495 ], "y_axis": [ -0.279, -0.870, -0.406 ], "z_axis": [ -0.412, 0.490, -0.768 ], "quaternion": [ -0.239, 0.936, -0.087, -0.242 ] } }, { "index": 624, "index_chain": 624, "chain_name": "A", "nt_resnum": 626, "nt_name": "G", "nt_code": "G", "nt_id": "///A/626", "linked_nts": [ "///A/625", "///A/627" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -67.911, "beta": 169.895, "gamma": 53.663, "delta": 79.258, "epsilon": -155.304, "zeta": -74.914, "epsilon_zeta": -80.390, "bb_type": "BI", "chi": -170.377, "glyco_bond": "anti", "C5prime_xyz": [ -1.591, 8.732, 1.086 ], "P_xyz": [ 0.891, 9.333, 1.586 ], "form": "A", "ssZp": 4.515, "Dp": 4.540, "splay_angle": 23.930, "splay_distance": 3.705, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 160.594, "theta": -154.352, "eta_prime": 174.742, "theta_prime": -153.571, "eta_base": -146.198, "theta_base": -125.604, "v0": -1.698, "v1": -21.657, "v2": 35.415, "v3": -37.370, "v4": 24.666, "amplitude": 37.962, "phase_angle": 21.109, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.979, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 152.559, 176.948, 191.329 ], "x_axis": [ 0.708, -0.629, -0.320 ], "y_axis": [ -0.687, -0.719, -0.108 ], "z_axis": [ -0.163, 0.296, -0.941 ], "quaternion": [ -0.110, 0.918, -0.358, -0.132 ] } }, { "index": 625, "index_chain": 625, "chain_name": "A", "nt_resnum": 627, "nt_name": "G", "nt_code": "G", "nt_id": "///A/627", "linked_nts": [ "///A/626", "///A/628" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -68.026, "beta": 173.565, "gamma": 55.629, "delta": 81.374, "epsilon": -143.735, "zeta": -73.466, "epsilon_zeta": -70.269, "bb_type": "BI", "chi": -173.896, "glyco_bond": "anti", "C5prime_xyz": [ -1.289, 8.561, 1.331 ], "P_xyz": [ 1.266, 8.796, 1.839 ], "form": "A", "ssZp": 4.662, "Dp": 4.676, "splay_angle": 25.653, "splay_distance": 3.930, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 169.382, "theta": -141.858, "eta_prime": 179.472, "theta_prime": -139.073, "eta_base": -140.037, "theta_base": -105.094, "v0": 2.588, "v1": -24.911, "v2": 36.510, "v3": -35.974, "v4": 21.084, "amplitude": 37.752, "phase_angle": 14.738, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.947, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 153.294, 178.909, 188.272 ], "x_axis": [ 0.227, -0.941, -0.252 ], "y_axis": [ -0.952, -0.269, 0.147 ], "z_axis": [ -0.206, 0.207, -0.957 ], "quaternion": [ -0.019, 0.783, -0.604, -0.146 ] } }, { "index": 626, "index_chain": 626, "chain_name": "A", "nt_resnum": 628, "nt_name": "C", "nt_code": "C", "nt_id": "///A/628", "linked_nts": [ "///A/627", "///A/629" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -68.785, "beta": 170.558, "gamma": 61.987, "delta": 84.743, "epsilon": -153.673, "zeta": -54.541, "epsilon_zeta": -99.133, "bb_type": "BI", "chi": -173.488, "glyco_bond": "anti", "C5prime_xyz": [ -1.267, 8.567, 1.321 ], "P_xyz": [ 1.306, 8.717, 1.771 ], "form": "A", "ssZp": 4.459, "Dp": 4.512, "splay_angle": 22.204, "splay_distance": 3.460, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 169.074, "theta": -125.296, "eta_prime": -173.630, "theta_prime": -126.694, "eta_base": -122.841, "theta_base": -79.450, "v0": 1.790, "v1": -22.565, "v2": 33.531, "v3": -33.417, "v4": 19.976, "amplitude": 34.833, "phase_angle": 15.716, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.844, "filter_rmsd": 0.064, "frame": { "rmsd": 0.009, "origin": [ 153.951, 178.662, 184.406 ], "x_axis": [ -0.408, -0.912, 0.036 ], "y_axis": [ -0.860, 0.397, 0.321 ], "z_axis": [ -0.307, 0.100, -0.946 ], "quaternion": [ -0.104, -0.534, 0.829, 0.127 ] } }, { "index": 627, "index_chain": 627, "chain_name": "A", "nt_resnum": 629, "nt_name": "G", "nt_code": "G", "nt_id": "///A/629", "linked_nts": [ "///A/628", "///A/630" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop", "alpha": -94.445, "beta": -170.190, "gamma": 60.934, "delta": 87.282, "epsilon": -120.789, "zeta": -130.414, "epsilon_zeta": 9.625, "bb_type": "--", "chi": -158.373, "glyco_bond": "anti", "C5prime_xyz": [ -1.302, 8.706, 0.485 ], "P_xyz": [ 1.245, 8.967, 1.037 ], "form": ".", "ssZp": 4.111, "Dp": 4.587, "splay_angle": 43.175, "splay_distance": 6.694, "splay_ratio": 0.372, "d22": null, "d64": null, "eta": 165.015, "theta": 173.756, "eta_prime": -176.425, "theta_prime": -176.116, "eta_base": -112.018, "theta_base": 164.320, "v0": 1.966, "v1": -21.597, "v2": 31.828, "v3": -31.601, "v4": 18.728, "amplitude": 32.994, "phase_angle": 15.282, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.283, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 152.406, 176.922, 181.845 ], "x_axis": [ -0.865, -0.278, 0.418 ], "y_axis": [ -0.270, 0.960, 0.081 ], "z_axis": [ -0.423, -0.042, -0.905 ], "quaternion": [ -0.218, -0.142, 0.966, 0.010 ] } }, { "index": 628, "index_chain": 628, "chain_name": "A", "nt_resnum": 630, "nt_name": "A", "nt_code": "A", "nt_id": "///A/630", "linked_nts": [ "///A/629", "///A/631" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,phosphate", "alpha": -94.173, "beta": 156.110, "gamma": 66.751, "delta": 86.338, "epsilon": -145.633, "zeta": -157.529, "epsilon_zeta": 11.896, "bb_type": "--", "chi": -121.996, "glyco_bond": "anti", "C5prime_xyz": [ -1.445, 8.325, -1.617 ], "P_xyz": [ 0.785, 7.943, -2.925 ], "form": ".", "ssZp": 2.648, "Dp": 4.576, "splay_angle": 81.518, "splay_distance": 12.236, "splay_ratio": 0.654, "d22": null, "d64": null, "eta": 165.022, "theta": 133.021, "eta_prime": 159.150, "theta_prime": 152.182, "eta_base": 139.093, "theta_base": 156.002, "v0": 3.141, "v1": -22.962, "v2": 32.827, "v3": -31.959, "v4": 18.250, "amplitude": 33.748, "phase_angle": 13.420, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.063, "filter_rmsd": 0.042, "frame": { "rmsd": 0.012, "origin": [ 156.425, 178.746, 176.811 ], "x_axis": [ -0.745, -0.535, 0.399 ], "y_axis": [ -0.653, 0.708, -0.270 ], "z_axis": [ -0.138, -0.462, -0.876 ], "quaternion": [ -0.147, -0.325, 0.912, -0.201 ] } }, { "index": 629, "index_chain": 629, "chain_name": "A", "nt_resnum": 631, "nt_name": "G", "nt_code": "G", "nt_id": "///A/631", "linked_nts": [ "///A/630", "///A/632" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,phosphate,splayed-apart", "alpha": -67.552, "beta": 169.279, "gamma": 72.378, "delta": 147.332, "epsilon": -143.608, "zeta": 99.859, "epsilon_zeta": 116.533, "bb_type": "--", "chi": -125.431, "glyco_bond": "anti", "C5prime_xyz": [ -1.603, 8.552, -0.925 ], "P_xyz": [ 0.991, 8.786, -0.652 ], "form": ".", "ssZp": 1.719, "Dp": 1.782, "splay_angle": 86.053, "splay_distance": 12.833, "splay_ratio": 0.683, "d22": null, "d64": null, "eta": -157.669, "theta": 90.515, "eta_prime": -157.101, "theta_prime": 67.866, "eta_base": -179.075, "theta_base": 94.762, "v0": -18.134, "v1": 32.526, "v2": -33.750, "v3": 24.168, "v4": -3.954, "amplitude": 34.535, "phase_angle": 167.758, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "3b", "suiteness": 0.074, "filter_rmsd": 0.020, "frame": { "rmsd": 0.020, "origin": [ 157.568, 182.987, 165.391 ], "x_axis": [ 0.120, -0.807, 0.579 ], "y_axis": [ -0.776, 0.287, 0.561 ], "z_axis": [ -0.619, -0.517, -0.592 ], "quaternion": [ -0.451, -0.597, 0.663, 0.017 ] } }, { "index": 630, "index_chain": 630, "chain_name": "A", "nt_resnum": 632, "nt_name": "U", "nt_code": "U", "nt_id": "///A/632", "linked_nts": [ "///A/631", "///A/633" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart", "alpha": -77.230, "beta": 147.110, "gamma": 45.485, "delta": 82.974, "epsilon": -153.286, "zeta": -68.065, "epsilon_zeta": -85.222, "bb_type": "BI", "chi": -169.293, "glyco_bond": "anti", "C5prime_xyz": [ -1.495, 8.634, 1.054 ], "P_xyz": [ 1.098, 8.762, 1.350 ], "form": "A", "ssZp": 4.465, "Dp": 4.518, "splay_angle": 18.928, "splay_distance": 3.026, "splay_ratio": 0.167, "d22": 4.452, "d64": 3.967, "eta": 163.964, "theta": -137.509, "eta_prime": 178.338, "theta_prime": -140.105, "eta_base": -176.428, "theta_base": -117.835, "v0": -0.222, "v1": -21.387, "v2": 33.571, "v3": -34.669, "v4": 22.010, "amplitude": 35.499, "phase_angle": 18.969, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.177, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 155.396, 195.382, 167.907 ], "x_axis": [ 0.588, -0.435, -0.682 ], "y_axis": [ -0.648, -0.758, -0.075 ], "z_axis": [ -0.485, 0.486, -0.727 ], "quaternion": [ -0.160, 0.876, -0.309, -0.333 ] } }, { "index": 631, "index_chain": 631, "chain_name": "A", "nt_resnum": 633, "nt_name": "U", "nt_code": "U", "nt_id": "///A/633", "linked_nts": [ "///A/632", "///A/634" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -77.121, "beta": -173.174, "gamma": 50.014, "delta": 83.647, "epsilon": -159.636, "zeta": -74.525, "epsilon_zeta": -85.111, "bb_type": "BI", "chi": -151.291, "glyco_bond": "anti", "C5prime_xyz": [ -1.356, 8.718, 0.008 ], "P_xyz": [ 1.180, 9.243, 0.407 ], "form": "A", "ssZp": 4.135, "Dp": 4.497, "splay_angle": 23.584, "splay_distance": 3.795, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 161.902, "theta": -154.004, "eta_prime": 175.158, "theta_prime": -154.398, "eta_base": -145.550, "theta_base": -137.714, "v0": 1.968, "v1": -23.015, "v2": 34.126, "v3": -33.921, "v4": 20.177, "amplitude": 35.413, "phase_angle": 15.494, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.812, "filter_rmsd": 0.100, "frame": { "rmsd": 0.008, "origin": [ 155.437, 197.433, 165.684 ], "x_axis": [ 0.146, -0.857, -0.495 ], "y_axis": [ -0.940, -0.276, 0.201 ], "z_axis": [ -0.308, 0.436, -0.845 ], "quaternion": [ -0.078, 0.753, -0.597, -0.267 ] } }, { "index": 632, "index_chain": 632, "chain_name": "A", "nt_resnum": 634, "nt_name": "A", "nt_code": "A", "nt_id": "///A/634", "linked_nts": [ "///A/633", "///A/635" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -63.289, "beta": 169.874, "gamma": 53.996, "delta": 79.427, "epsilon": -142.808, "zeta": -83.373, "epsilon_zeta": -59.436, "bb_type": "BI", "chi": -163.919, "glyco_bond": "anti", "C5prime_xyz": [ -1.452, 8.761, 0.742 ], "P_xyz": [ 1.090, 9.278, 1.071 ], "form": "A", "ssZp": 4.431, "Dp": 4.610, "splay_angle": 23.445, "splay_distance": 3.704, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 169.984, "theta": -147.237, "eta_prime": 179.088, "theta_prime": -144.095, "eta_base": -153.402, "theta_base": -109.967, "v0": -0.604, "v1": -22.343, "v2": 35.522, "v3": -36.829, "v4": 23.622, "amplitude": 37.683, "phase_angle": 19.500, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.898, "filter_rmsd": 0.044, "frame": { "rmsd": 0.010, "origin": [ 155.627, 199.501, 162.507 ], "x_axis": [ -0.185, -0.963, -0.194 ], "y_axis": [ -0.908, 0.093, 0.408 ], "z_axis": [ -0.375, 0.251, -0.892 ], "quaternion": [ -0.062, -0.635, 0.737, 0.224 ] } }, { "index": 633, "index_chain": 633, "chain_name": "A", "nt_resnum": 635, "nt_name": "C", "nt_code": "C", "nt_id": "///A/635", "linked_nts": [ "///A/634", "///A/636" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -41.670, "beta": 159.081, "gamma": 42.046, "delta": 80.405, "epsilon": -156.883, "zeta": -80.457, "epsilon_zeta": -76.426, "bb_type": "BI", "chi": -160.818, "glyco_bond": "anti", "C5prime_xyz": [ -1.368, 8.783, 0.581 ], "P_xyz": [ 1.213, 9.087, 0.873 ], "form": "A", "ssZp": 4.406, "Dp": 4.541, "splay_angle": 22.153, "splay_distance": 3.886, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 168.224, "theta": -124.112, "eta_prime": -175.676, "theta_prime": -133.955, "eta_base": -127.087, "theta_base": -115.329, "v0": 0.061, "v1": -22.374, "v2": 35.050, "v3": -36.003, "v4": 22.670, "amplitude": 36.975, "phase_angle": 18.569, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.434, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 154.888, 199.012, 158.910 ], "x_axis": [ -0.654, -0.738, 0.163 ], "y_axis": [ -0.634, 0.653, 0.413 ], "z_axis": [ -0.412, 0.167, -0.896 ], "quaternion": [ -0.161, -0.383, 0.895, 0.162 ] } }, { "index": 634, "index_chain": 634, "chain_name": "A", "nt_resnum": 636, "nt_name": "G", "nt_code": "G", "nt_id": "///A/636", "linked_nts": [ "///A/635", "///A/637" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 152.940, "beta": -155.426, "gamma": 176.113, "delta": 82.021, "epsilon": -144.779, "zeta": -81.630, "epsilon_zeta": -63.149, "bb_type": "BI", "chi": 178.032, "glyco_bond": "anti", "C5prime_xyz": [ -1.605, 8.439, 1.761 ], "P_xyz": [ 0.153, 10.167, 0.905 ], "form": "A", "ssZp": 4.510, "Dp": 4.564, "splay_angle": 21.887, "splay_distance": 3.679, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 162.622, "theta": -143.338, "eta_prime": 179.203, "theta_prime": -152.231, "eta_base": -140.451, "theta_base": -122.448, "v0": -0.224, "v1": -21.502, "v2": 33.862, "v3": -34.985, "v4": 22.230, "amplitude": 35.819, "phase_angle": 19.026, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.858, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 153.902, 197.177, 155.629 ], "x_axis": [ -0.748, -0.363, 0.556 ], "y_axis": [ -0.273, 0.931, 0.241 ], "z_axis": [ -0.605, 0.028, -0.796 ], "quaternion": [ -0.311, -0.171, 0.932, 0.072 ] } }, { "index": 635, "index_chain": 635, "chain_name": "A", "nt_resnum": 637, "nt_name": "A", "nt_code": "A", "nt_id": "///A/637", "linked_nts": [ "///A/636", "///A/638" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 165.057, "beta": -162.937, "gamma": 157.471, "delta": 81.172, "epsilon": -114.710, "zeta": -96.457, "epsilon_zeta": -18.253, "bb_type": "--", "chi": 176.363, "glyco_bond": "anti", "C5prime_xyz": [ -1.460, 8.235, 1.886 ], "P_xyz": [ 0.570, 9.704, 1.161 ], "form": "A", "ssZp": 4.738, "Dp": 4.758, "splay_angle": 24.481, "splay_distance": 3.729, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 150.608, "theta": -156.489, "eta_prime": 168.264, "theta_prime": -151.318, "eta_base": -144.171, "theta_base": -113.156, "v0": 4.015, "v1": -25.847, "v2": 36.735, "v3": -35.464, "v4": 19.828, "amplitude": 37.653, "phase_angle": 12.677, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.254, "filter_rmsd": 0.043, "frame": { "rmsd": 0.010, "origin": [ 151.744, 195.006, 153.589 ], "x_axis": [ -0.677, 0.279, 0.681 ], "y_axis": [ 0.202, 0.960, -0.193 ], "z_axis": [ -0.707, 0.007, -0.707 ], "quaternion": [ -0.380, 0.132, 0.914, -0.051 ] } }, { "index": 636, "index_chain": 636, "chain_name": "A", "nt_resnum": 638, "nt_name": "U", "nt_code": "U", "nt_id": "///A/638", "linked_nts": [ "///A/637", "///A/639" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -46.465, "beta": 152.968, "gamma": 45.214, "delta": 79.644, "epsilon": -148.568, "zeta": -85.992, "epsilon_zeta": -62.576, "bb_type": "BI", "chi": -164.884, "glyco_bond": "anti", "C5prime_xyz": [ -1.303, 8.628, 0.835 ], "P_xyz": [ 1.299, 8.764, 0.873 ], "form": "A", "ssZp": 4.551, "Dp": 4.669, "splay_angle": 21.149, "splay_distance": 3.353, "splay_ratio": 0.187, "d22": 4.517, "d64": 4.688, "eta": 161.046, "theta": -153.186, "eta_prime": 177.544, "theta_prime": -154.876, "eta_base": -130.690, "theta_base": -148.090, "v0": 3.818, "v1": -26.580, "v2": 38.062, "v3": -36.895, "v4": 20.838, "amplitude": 39.084, "phase_angle": 13.135, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.195, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 148.247, 194.490, 152.403 ], "x_axis": [ -0.316, 0.848, 0.426 ], "y_axis": [ 0.547, 0.530, -0.648 ], "z_axis": [ -0.775, 0.028, -0.631 ], "quaternion": [ -0.382, 0.443, 0.787, -0.197 ] } }, { "index": 637, "index_chain": 637, "chain_name": "A", "nt_resnum": 639, "nt_name": "C", "nt_code": "C", "nt_id": "///A/639", "linked_nts": [ "///A/638", "///A/640" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -50.914, "beta": 161.567, "gamma": 50.643, "delta": 79.476, "epsilon": -150.718, "zeta": -82.504, "epsilon_zeta": -68.215, "bb_type": "BI", "chi": -163.032, "glyco_bond": "anti", "C5prime_xyz": [ -1.420, 8.781, 0.685 ], "P_xyz": [ 1.152, 9.189, 0.773 ], "form": "A", "ssZp": 4.476, "Dp": 4.606, "splay_angle": 26.165, "splay_distance": 4.128, "splay_ratio": 0.227, "d22": 4.516, "d64": 4.665, "eta": 170.386, "theta": -155.502, "eta_prime": 179.549, "theta_prime": -155.476, "eta_base": -159.981, "theta_base": -141.276, "v0": 0.281, "v1": -23.447, "v2": 36.411, "v3": -37.265, "v4": 23.300, "amplitude": 38.328, "phase_angle": 18.197, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.705, "filter_rmsd": 0.062, "frame": { "rmsd": 0.004, "origin": [ 145.277, 193.054, 151.803 ], "x_axis": [ -0.032, 0.980, 0.196 ], "y_axis": [ 0.516, 0.184, -0.837 ], "z_axis": [ -0.856, 0.074, -0.512 ], "quaternion": [ -0.400, 0.569, 0.657, -0.290 ] } }, { "index": 638, "index_chain": 638, "chain_name": "A", "nt_resnum": 640, "nt_name": "U", "nt_code": "U", "nt_id": "///A/640", "linked_nts": [ "///A/639", "///A/641" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -61.611, "beta": 169.471, "gamma": 55.970, "delta": 81.794, "epsilon": -152.893, "zeta": -63.934, "epsilon_zeta": -88.960, "bb_type": "BI", "chi": -170.273, "glyco_bond": "anti", "C5prime_xyz": [ -1.527, 8.650, 1.105 ], "P_xyz": [ 1.003, 9.095, 1.570 ], "form": "A", "ssZp": 4.489, "Dp": 4.530, "splay_angle": 23.197, "splay_distance": 3.658, "splay_ratio": 0.203, "d22": 4.102, "d64": 4.091, "eta": 171.387, "theta": -139.033, "eta_prime": -179.723, "theta_prime": -139.574, "eta_base": -154.336, "theta_base": -102.111, "v0": -0.472, "v1": -21.841, "v2": 34.557, "v3": -35.768, "v4": 22.863, "amplitude": 36.617, "phase_angle": 19.308, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.888, "filter_rmsd": 0.103, "frame": { "rmsd": 0.007, "origin": [ 141.192, 192.646, 151.360 ], "x_axis": [ 0.377, 0.926, -0.027 ], "y_axis": [ 0.529, -0.239, -0.814 ], "z_axis": [ -0.760, 0.292, -0.580 ], "quaternion": [ -0.373, 0.741, 0.491, -0.266 ] } }, { "index": 639, "index_chain": 639, "chain_name": "A", "nt_resnum": 641, "nt_name": "C", "nt_code": "C", "nt_id": "///A/641", "linked_nts": [ "///A/640", "///A/642" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -76.786, "beta": 176.672, "gamma": 58.342, "delta": 80.768, "epsilon": -154.482, "zeta": -65.908, "epsilon_zeta": -88.575, "bb_type": "BI", "chi": -167.335, "glyco_bond": "anti", "C5prime_xyz": [ -1.339, 8.690, 0.938 ], "P_xyz": [ 1.233, 9.109, 1.207 ], "form": "A", "ssZp": 4.577, "Dp": 4.614, "splay_angle": 21.940, "splay_distance": 3.538, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 161.531, "theta": -143.523, "eta_prime": 179.083, "theta_prime": -142.823, "eta_base": -123.476, "theta_base": -120.447, "v0": 2.047, "v1": -24.541, "v2": 36.418, "v3": -36.219, "v4": 21.529, "amplitude": 37.799, "phase_angle": 15.537, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.837, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 138.832, 195.241, 150.321 ], "x_axis": [ 0.653, 0.525, -0.546 ], "y_axis": [ 0.132, -0.789, -0.601 ], "z_axis": [ -0.746, 0.320, -0.584 ], "quaternion": [ -0.265, 0.870, 0.189, -0.371 ] } }, { "index": 640, "index_chain": 640, "chain_name": "A", "nt_resnum": 642, "nt_name": "G", "nt_code": "G", "nt_id": "///A/642", "linked_nts": [ "///A/641", "///A/643" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -76.399, "beta": -171.806, "gamma": 53.881, "delta": 82.457, "epsilon": -159.319, "zeta": -70.611, "epsilon_zeta": -88.708, "bb_type": "BI", "chi": -158.713, "glyco_bond": "anti", "C5prime_xyz": [ -1.476, 8.778, 0.449 ], "P_xyz": [ 1.012, 9.352, 1.020 ], "form": "A", "ssZp": 4.320, "Dp": 4.490, "splay_angle": 22.187, "splay_distance": 3.546, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 166.604, "theta": -150.881, "eta_prime": 179.178, "theta_prime": -149.465, "eta_base": -144.684, "theta_base": -125.527, "v0": 0.355, "v1": -22.166, "v2": 34.289, "v3": -35.020, "v4": 21.888, "amplitude": 36.063, "phase_angle": 18.049, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.816, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 137.023, 198.048, 149.156 ], "x_axis": [ 0.773, -0.080, -0.629 ], "y_axis": [ -0.311, -0.912, -0.267 ], "z_axis": [ -0.552, 0.402, -0.730 ], "quaternion": [ -0.181, 0.924, -0.106, -0.319 ] } }, { "index": 641, "index_chain": 641, "chain_name": "A", "nt_resnum": 643, "nt_name": "U", "nt_code": "U", "nt_id": "///A/643", "linked_nts": [ "///A/642", "///A/644" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.818, "beta": 174.513, "gamma": 53.769, "delta": 80.377, "epsilon": -145.544, "zeta": -81.970, "epsilon_zeta": -63.574, "bb_type": "BI", "chi": -160.253, "glyco_bond": "anti", "C5prime_xyz": [ -1.572, 8.731, 0.530 ], "P_xyz": [ 0.975, 9.268, 0.764 ], "form": "A", "ssZp": 4.396, "Dp": 4.631, "splay_angle": 26.622, "splay_distance": 4.293, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": 168.867, "theta": -150.569, "eta_prime": -179.361, "theta_prime": -149.233, "eta_base": -143.582, "theta_base": -130.521, "v0": 0.815, "v1": -23.552, "v2": 36.088, "v3": -36.611, "v4": 22.535, "amplitude": 37.816, "phase_angle": 17.387, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.910, "filter_rmsd": 0.100, "frame": { "rmsd": 0.007, "origin": [ 135.971, 200.563, 146.888 ], "x_axis": [ 0.561, -0.545, -0.624 ], "y_axis": [ -0.671, -0.740, 0.043 ], "z_axis": [ -0.485, 0.394, -0.781 ], "quaternion": [ -0.100, 0.878, -0.346, -0.316 ] } }, { "index": 642, "index_chain": 642, "chain_name": "A", "nt_resnum": 644, "nt_name": "G", "nt_code": "G", "nt_id": "///A/644", "linked_nts": [ "///A/643", "///A/645" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -51.496, "beta": 172.003, "gamma": 43.532, "delta": 79.756, "epsilon": -145.157, "zeta": -73.593, "epsilon_zeta": -71.564, "bb_type": "BI", "chi": -163.274, "glyco_bond": "anti", "C5prime_xyz": [ -1.540, 8.791, 0.695 ], "P_xyz": [ 0.921, 9.400, 1.282 ], "form": "A", "ssZp": 4.436, "Dp": 4.605, "splay_angle": 22.441, "splay_distance": 3.592, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 171.628, "theta": -144.404, "eta_prime": 179.702, "theta_prime": -141.176, "eta_base": -151.948, "theta_base": -103.116, "v0": -0.783, "v1": -22.317, "v2": 35.640, "v3": -37.102, "v4": 23.886, "amplitude": 37.875, "phase_angle": 19.784, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.697, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 135.449, 203.088, 143.455 ], "x_axis": [ 0.327, -0.902, -0.281 ], "y_axis": [ -0.830, -0.416, 0.371 ], "z_axis": [ -0.452, 0.111, -0.885 ], "quaternion": [ 0.080, 0.811, -0.534, -0.226 ] } }, { "index": 643, "index_chain": 643, "chain_name": "A", "nt_resnum": 645, "nt_name": "C", "nt_code": "C", "nt_id": "///A/645", "linked_nts": [ "///A/644", "///A/646" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop", "alpha": -57.372, "beta": 163.011, "gamma": 53.112, "delta": 79.618, "epsilon": -159.619, "zeta": -79.402, "epsilon_zeta": -80.216, "bb_type": "BI", "chi": -163.988, "glyco_bond": "anti", "C5prime_xyz": [ -1.514, 8.778, 0.731 ], "P_xyz": [ 1.046, 9.280, 0.796 ], "form": "A", "ssZp": 4.490, "Dp": 4.543, "splay_angle": 21.144, "splay_distance": 3.669, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 164.546, "theta": -124.707, "eta_prime": -176.895, "theta_prime": -133.304, "eta_base": -122.178, "theta_base": -106.623, "v0": -0.744, "v1": -22.140, "v2": 35.303, "v3": -36.714, "v4": 23.624, "amplitude": 37.502, "phase_angle": 19.719, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.905, "filter_rmsd": 0.058, "frame": { "rmsd": 0.010, "origin": [ 135.264, 202.228, 139.972 ], "x_axis": [ -0.214, -0.974, 0.071 ], "y_axis": [ -0.888, 0.224, 0.402 ], "z_axis": [ -0.408, 0.023, -0.913 ], "quaternion": [ -0.156, -0.607, 0.767, 0.139 ] } }, { "index": 644, "index_chain": 644, "chain_name": "A", "nt_resnum": 646, "nt_name": "A", "nt_code": "A", "nt_id": "///A/646", "linked_nts": [ "///A/645", "///A/647" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": 154.127, "beta": -149.352, "gamma": 173.994, "delta": 81.705, "epsilon": -170.785, "zeta": -95.819, "epsilon_zeta": -74.966, "bb_type": "BI", "chi": -173.379, "glyco_bond": "anti", "C5prime_xyz": [ -1.595, 8.508, 1.291 ], "P_xyz": [ 0.003, 10.042, -0.086 ], "form": ".", "ssZp": 4.436, "Dp": 4.440, "splay_angle": 59.920, "splay_distance": 9.301, "splay_ratio": 0.505, "d22": null, "d64": null, "eta": 163.806, "theta": 142.242, "eta_prime": -173.101, "theta_prime": 140.846, "eta_base": -121.867, "theta_base": 127.305, "v0": 1.308, "v1": -23.097, "v2": 34.839, "v3": -35.121, "v4": 21.341, "amplitude": 36.363, "phase_angle": 16.645, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.811, "filter_rmsd": 0.037, "frame": { "rmsd": 0.010, "origin": [ 135.150, 199.988, 137.068 ], "x_axis": [ -0.647, -0.719, 0.253 ], "y_axis": [ -0.715, 0.688, 0.126 ], "z_axis": [ -0.265, -0.099, -0.959 ], "quaternion": [ -0.143, -0.395, 0.908, 0.008 ] } }, { "index": 645, "index_chain": 645, "chain_name": "A", "nt_resnum": 647, "nt_name": "A", "nt_code": "A", "nt_id": "///A/647", "linked_nts": [ "///A/646", "///A/648" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate", "alpha": -117.046, "beta": 127.727, "gamma": 174.245, "delta": 146.272, "epsilon": -55.022, "zeta": 94.265, "epsilon_zeta": 210.713, "bb_type": "--", "chi": -107.809, "glyco_bond": "anti", "C5prime_xyz": [ -1.916, 8.200, -1.815 ], "P_xyz": [ -1.683, 8.873, -4.338 ], "form": ".", "ssZp": -0.245, "Dp": 0.335, "splay_angle": 47.782, "splay_distance": 8.494, "splay_ratio": 0.407, "d22": null, "d64": null, "eta": -70.340, "theta": 93.728, "eta_prime": -109.424, "theta_prime": 98.664, "eta_base": -158.766, "theta_base": 128.401, "v0": -19.287, "v1": 33.521, "v2": -34.157, "v3": 23.914, "v4": -3.114, "amplitude": 35.169, "phase_angle": 166.221, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 142.015, 205.686, 134.438 ], "x_axis": [ 0.179, -0.896, -0.407 ], "y_axis": [ -0.779, 0.124, -0.615 ], "z_axis": [ 0.601, 0.427, -0.675 ], "quaternion": [ -0.396, 0.658, -0.636, 0.074 ] } }, { "index": 646, "index_chain": 646, "chain_name": "A", "nt_resnum": 648, "nt_name": "G", "nt_code": "G", "nt_id": "///A/648", "linked_nts": [ "///A/647", "///A/649" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 32.707, "beta": -158.042, "gamma": -54.258, "delta": 152.153, "epsilon": -172.825, "zeta": -131.689, "epsilon_zeta": -41.135, "bb_type": "BI", "chi": -91.782, "glyco_bond": "anti", "C5prime_xyz": [ -2.298, 7.856, -2.306 ], "P_xyz": [ -2.037, 10.121, -3.553 ], "form": ".", "ssZp": 2.285, "Dp": 2.229, "splay_angle": 18.873, "splay_distance": 3.384, "splay_ratio": 0.169, "d22": null, "d64": null, "eta": -106.028, "theta": -168.689, "eta_prime": -115.897, "theta_prime": 171.501, "eta_base": -102.858, "theta_base": -145.766, "v0": -21.080, "v1": 37.393, "v2": -38.149, "v3": 26.934, "v4": -3.892, "amplitude": 39.193, "phase_angle": 166.750, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.022, "frame": { "rmsd": 0.022, "origin": [ 142.195, 212.325, 139.733 ], "x_axis": [ 0.293, 0.951, -0.098 ], "y_axis": [ -0.851, 0.213, -0.480 ], "z_axis": [ -0.436, 0.224, 0.872 ], "quaternion": [ 0.771, -0.228, -0.110, 0.584 ] } }, { "index": 647, "index_chain": 647, "chain_name": "A", "nt_resnum": 649, "nt_name": "G", "nt_code": "G", "nt_id": "///A/649", "linked_nts": [ "///A/648", "///A/650" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 101.183, "beta": -153.653, "gamma": -165.545, "delta": 71.398, "epsilon": 83.949, "zeta": 76.896, "epsilon_zeta": 7.053, "bb_type": "--", "chi": -164.969, "glyco_bond": "anti", "C5prime_xyz": [ -0.811, 8.581, 0.746 ], "P_xyz": [ 0.168, 10.388, -0.861 ], "form": ".", "ssZp": 3.822, "Dp": 3.810, "splay_angle": 26.052, "splay_distance": 4.546, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": -176.297, "theta": -150.464, "eta_prime": 168.507, "theta_prime": -146.053, "eta_base": -138.981, "theta_base": -110.639, "v0": 8.826, "v1": -32.810, "v2": 43.589, "v3": -39.483, "v4": 19.303, "amplitude": 43.944, "phase_angle": 7.285, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "4n", "suiteness": 0.053, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 141.703, 213.667, 142.800 ], "x_axis": [ -0.148, 0.897, -0.416 ], "y_axis": [ -0.878, -0.313, -0.362 ], "z_axis": [ -0.455, 0.312, 0.834 ], "quaternion": [ 0.586, -0.288, -0.017, 0.757 ] } }, { "index": 648, "index_chain": 648, "chain_name": "A", "nt_resnum": 650, "nt_name": "U", "nt_code": "U", "nt_id": "///A/650", "linked_nts": [ "///A/649", "///A/651" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate", "alpha": 52.054, "beta": -155.803, "gamma": -168.474, "delta": 79.126, "epsilon": -119.778, "zeta": -134.217, "epsilon_zeta": 14.440, "bb_type": "--", "chi": -175.370, "glyco_bond": "anti", "C5prime_xyz": [ -1.132, 8.374, 1.415 ], "P_xyz": [ 0.083, 10.348, 0.223 ], "form": ".", "ssZp": 4.743, "Dp": 4.830, "splay_angle": 37.408, "splay_distance": 6.362, "splay_ratio": 0.336, "d22": 7.014, "d64": 8.475, "eta": 138.649, "theta": -170.744, "eta_prime": 169.090, "theta_prime": -166.842, "eta_base": -135.294, "theta_base": -168.350, "v0": 6.749, "v1": -29.439, "v2": 39.909, "v3": -37.024, "v4": 19.071, "amplitude": 40.430, "phase_angle": 9.206, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.009, "origin": [ 140.342, 217.275, 145.209 ], "x_axis": [ -0.606, 0.505, -0.614 ], "y_axis": [ -0.608, -0.793, -0.052 ], "z_axis": [ -0.513, 0.341, 0.788 ], "quaternion": [ 0.312, -0.316, 0.081, 0.893 ] } }, { "index": 649, "index_chain": 649, "chain_name": "A", "nt_resnum": 651, "nt_name": "U", "nt_code": "U", "nt_id": "///A/651", "linked_nts": [ "///A/650", "///A/652" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": 119.028, "beta": -105.704, "gamma": -144.637, "delta": 81.086, "epsilon": -164.442, "zeta": -75.130, "epsilon_zeta": -89.312, "bb_type": "BI", "chi": -167.825, "glyco_bond": "anti", "C5prime_xyz": [ -1.573, 8.671, 0.960 ], "P_xyz": [ -1.372, 10.325, -1.060 ], "form": ".", "ssZp": 4.445, "Dp": 4.484, "splay_angle": 31.077, "splay_distance": 4.774, "splay_ratio": 0.269, "d22": null, "d64": null, "eta": -145.895, "theta": 150.637, "eta_prime": -148.192, "theta_prime": 163.875, "eta_base": -149.290, "theta_base": -173.892, "v0": 0.924, "v1": -23.677, "v2": 36.073, "v3": -36.541, "v4": 22.448, "amplitude": 37.764, "phase_angle": 17.210, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.096, "frame": { "rmsd": 0.014, "origin": [ 140.840, 221.353, 150.067 ], "x_axis": [ -0.735, 0.611, -0.292 ], "y_axis": [ -0.652, -0.756, 0.057 ], "z_axis": [ -0.186, 0.233, 0.955 ], "quaternion": [ 0.340, -0.129, 0.078, 0.928 ] } }, { "index": 650, "index_chain": 650, "chain_name": "A", "nt_resnum": 652, "nt_name": "A", "nt_code": "A", "nt_id": "///A/652", "linked_nts": [ "///A/651", "///A/653" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,A-minor,ribose-zipper,phosphate", "alpha": -72.144, "beta": -174.402, "gamma": 57.097, "delta": 81.834, "epsilon": -115.365, "zeta": -90.938, "epsilon_zeta": -24.427, "bb_type": "--", "chi": 173.981, "glyco_bond": "anti", "C5prime_xyz": [ -1.722, 8.318, 1.954 ], "P_xyz": [ 0.513, 8.487, 3.308 ], "form": "A", "ssZp": 4.558, "Dp": 4.621, "splay_angle": 22.140, "splay_distance": 3.421, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": -176.862, "theta": -136.426, "eta_prime": -175.883, "theta_prime": -130.439, "eta_base": -156.479, "theta_base": -84.646, "v0": -0.061, "v1": -21.804, "v2": 34.113, "v3": -35.103, "v4": 22.200, "amplitude": 36.016, "phase_angle": 18.711, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.778, "filter_rmsd": 0.044, "frame": { "rmsd": 0.015, "origin": [ 142.423, 223.374, 154.092 ], "x_axis": [ -0.788, 0.213, -0.577 ], "y_axis": [ -0.197, -0.976, -0.090 ], "z_axis": [ -0.583, 0.043, 0.812 ], "quaternion": [ 0.108, -0.307, -0.013, 0.946 ] } }, { "index": 651, "index_chain": 651, "chain_name": "A", "nt_resnum": 653, "nt_name": "A", "nt_code": "A", "nt_id": "///A/653", "linked_nts": [ "///A/652", "///A/654" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper", "alpha": -59.324, "beta": 144.341, "gamma": 60.659, "delta": 83.691, "epsilon": -130.827, "zeta": -64.298, "epsilon_zeta": -66.529, "bb_type": "BI", "chi": -173.780, "glyco_bond": "anti", "C5prime_xyz": [ -1.643, 8.572, 1.309 ], "P_xyz": [ 0.960, 8.791, 1.310 ], "form": ".", "ssZp": 4.478, "Dp": 4.567, "splay_angle": 37.792, "splay_distance": 5.876, "splay_ratio": 0.324, "d22": null, "d64": null, "eta": 161.055, "theta": -116.056, "eta_prime": -179.063, "theta_prime": -114.670, "eta_base": -118.556, "theta_base": -71.101, "v0": -1.089, "v1": -20.579, "v2": 33.122, "v3": -34.692, "v4": 22.582, "amplitude": 35.324, "phase_angle": 20.338, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.912, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 139.699, 224.343, 155.920 ], "x_axis": [ -0.683, -0.522, -0.511 ], "y_axis": [ 0.390, -0.852, 0.349 ], "z_axis": [ -0.618, 0.039, 0.786 ], "quaternion": [ -0.250, -0.310, 0.107, 0.911 ] } }, { "index": 652, "index_chain": 652, "chain_name": "A", "nt_resnum": 654, "nt_name": "G", "nt_code": "G", "nt_id": "///A/654", "linked_nts": [ "///A/653", "///A/655" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -58.894, "beta": 164.066, "gamma": 58.906, "delta": 83.449, "epsilon": -152.023, "zeta": -75.670, "epsilon_zeta": -76.352, "bb_type": "BI", "chi": -159.316, "glyco_bond": "anti", "C5prime_xyz": [ -1.310, 8.772, 0.511 ], "P_xyz": [ 1.293, 9.031, 0.493 ], "form": "A", "ssZp": 4.313, "Dp": 4.514, "splay_angle": 24.019, "splay_distance": 3.828, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 166.361, "theta": -145.966, "eta_prime": -163.332, "theta_prime": -147.269, "eta_base": -93.802, "theta_base": -124.174, "v0": 0.528, "v1": -21.701, "v2": 33.404, "v3": -34.060, "v4": 21.163, "amplitude": 35.082, "phase_angle": 17.793, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.764, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 135.110, 221.292, 157.960 ], "x_axis": [ 0.013, -0.996, 0.091 ], "y_axis": [ 0.810, 0.064, 0.583 ], "z_axis": [ -0.586, 0.066, 0.808 ], "quaternion": [ 0.686, 0.188, -0.247, -0.658 ] } }, { "index": 653, "index_chain": 653, "chain_name": "A", "nt_resnum": 655, "nt_name": "C", "nt_code": "C", "nt_id": "///A/655", "linked_nts": [ "///A/654", "///A/656" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -59.461, "beta": 172.019, "gamma": 50.407, "delta": 81.810, "epsilon": -150.608, "zeta": -82.941, "epsilon_zeta": -67.667, "bb_type": "BI", "chi": -156.059, "glyco_bond": "anti", "C5prime_xyz": [ -1.252, 8.785, 0.290 ], "P_xyz": [ 1.331, 9.149, 0.460 ], "form": "A", "ssZp": 4.278, "Dp": 4.580, "splay_angle": 24.901, "splay_distance": 4.192, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 170.539, "theta": -122.491, "eta_prime": -176.809, "theta_prime": -132.877, "eta_base": -139.761, "theta_base": -112.555, "v0": 0.859, "v1": -22.648, "v2": 34.655, "v3": -35.132, "v4": 21.604, "amplitude": 36.298, "phase_angle": 17.304, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.945, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 132.109, 220.976, 160.315 ], "x_axis": [ 0.472, -0.816, 0.333 ], "y_axis": [ 0.664, 0.578, 0.475 ], "z_axis": [ -0.580, -0.004, 0.815 ], "quaternion": [ 0.846, 0.141, -0.269, -0.437 ] } }, { "index": 654, "index_chain": 654, "chain_name": "A", "nt_resnum": 656, "nt_name": "A", "nt_code": "A", "nt_id": "///A/656", "linked_nts": [ "///A/655", "///A/657" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": 154.331, "beta": -157.748, "gamma": 167.086, "delta": 78.450, "epsilon": -110.187, "zeta": -72.420, "epsilon_zeta": -37.768, "bb_type": "--", "chi": -177.843, "glyco_bond": "anti", "C5prime_xyz": [ -1.320, 8.333, 1.542 ], "P_xyz": [ 0.339, 9.942, 0.333 ], "form": ".", "ssZp": 4.760, "Dp": 4.851, "splay_angle": 34.195, "splay_distance": 5.156, "splay_ratio": 0.295, "d22": null, "d64": null, "eta": 152.738, "theta": -139.122, "eta_prime": 168.731, "theta_prime": -135.996, "eta_base": -151.269, "theta_base": -84.351, "v0": 6.542, "v1": -29.454, "v2": 40.076, "v3": -37.392, "v4": 19.407, "amplitude": 40.642, "phase_angle": 9.574, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.621, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 129.950, 218.810, 163.182 ], "x_axis": [ 0.867, -0.412, 0.280 ], "y_axis": [ 0.331, 0.896, 0.295 ], "z_axis": [ -0.373, -0.163, 0.913 ], "quaternion": [ 0.959, 0.120, -0.170, -0.194 ] } }, { "index": 655, "index_chain": 655, "chain_name": "A", "nt_resnum": 657, "nt_name": "G", "nt_code": "G", "nt_id": "///A/657", "linked_nts": [ "///A/656", "///A/658" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": -70.686, "beta": 149.908, "gamma": 70.732, "delta": 76.566, "epsilon": -102.761, "zeta": -120.335, "epsilon_zeta": 17.574, "bb_type": "--", "chi": 177.047, "glyco_bond": "anti", "C5prime_xyz": [ -1.348, 8.270, 1.766 ], "P_xyz": [ 1.128, 8.815, 1.150 ], "form": ".", "ssZp": 4.848, "Dp": 4.895, "splay_angle": 86.152, "splay_distance": 10.811, "splay_ratio": 0.684, "d22": null, "d64": null, "eta": 160.193, "theta": -111.401, "eta_prime": -176.203, "theta_prime": -147.977, "eta_base": -102.274, "theta_base": 145.306, "v0": 6.522, "v1": -30.393, "v2": 41.534, "v3": -38.842, "v4": 20.339, "amplitude": 42.159, "phase_angle": 9.881, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.154, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 132.851, 217.456, 167.223 ], "x_axis": [ 0.769, 0.553, 0.320 ], "y_axis": [ -0.588, 0.809, 0.015 ], "z_axis": [ -0.251, -0.200, 0.947 ], "quaternion": [ 0.939, 0.057, -0.152, 0.304 ] } }, { "index": 656, "index_chain": 656, "chain_name": "A", "nt_resnum": 658, "nt_name": "A", "nt_code": "A", "nt_id": "///A/658", "linked_nts": [ "///A/657", "///A/659" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 83.997, "beta": 142.854, "gamma": -178.221, "delta": 148.973, "epsilon": -153.798, "zeta": -13.992, "epsilon_zeta": -139.806, "bb_type": "--", "chi": 26.221, "glyco_bond": "syn", "C5prime_xyz": [ -5.435, 3.802, -0.687 ], "P_xyz": [ -7.156, 2.033, 0.214 ], "form": ".", "ssZp": -1.429, "Dp": 1.919, "splay_angle": 126.634, "splay_distance": 17.059, "splay_ratio": 0.894, "d22": null, "d64": null, "eta": 78.023, "theta": -70.960, "eta_prime": 92.727, "theta_prime": -121.162, "eta_base": 63.704, "theta_base": -160.065, "v0": -21.352, "v1": 36.427, "v2": -36.732, "v3": 25.357, "v4": -2.708, "amplitude": 37.980, "phase_angle": 165.273, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 122.894, 213.918, 169.509 ], "x_axis": [ -0.294, -0.956, 0.002 ], "y_axis": [ 0.623, -0.191, 0.759 ], "z_axis": [ -0.725, 0.224, 0.651 ], "quaternion": [ 0.540, 0.247, -0.336, -0.731 ] } }, { "index": 657, "index_chain": 657, "chain_name": "A", "nt_resnum": 659, "nt_name": "A", "nt_code": "A", "nt_id": "///A/659", "linked_nts": [ "///A/658", "///A/660" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,splayed-apart", "alpha": 124.955, "beta": 143.547, "gamma": 38.758, "delta": 144.813, "epsilon": -104.360, "zeta": -76.420, "epsilon_zeta": -27.940, "bb_type": "--", "chi": -106.551, "glyco_bond": "anti", "C5prime_xyz": [ -2.297, 8.232, -1.883 ], "P_xyz": [ 0.230, 8.904, -1.751 ], "form": ".", "ssZp": 0.921, "Dp": 1.027, "splay_angle": 127.958, "splay_distance": 17.329, "splay_ratio": 0.899, "d22": null, "d64": null, "eta": -25.216, "theta": -57.010, "eta_prime": 57.396, "theta_prime": -74.761, "eta_base": 61.900, "theta_base": -47.528, "v0": -23.430, "v1": 36.662, "v2": -35.184, "v3": 22.572, "v4": 0.316, "amplitude": 37.270, "phase_angle": 160.740, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.006, "origin": [ 137.509, 211.046, 177.825 ], "x_axis": [ -0.490, -0.147, 0.859 ], "y_axis": [ -0.811, 0.440, -0.386 ], "z_axis": [ -0.321, -0.886, -0.335 ], "quaternion": [ -0.392, -0.318, 0.752, -0.423 ] } }, { "index": 658, "index_chain": 658, "chain_name": "A", "nt_resnum": 660, "nt_name": "G", "nt_code": "G", "nt_id": "///A/660", "linked_nts": [ "///A/659", "///A/661" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -51.570, "beta": 176.723, "gamma": 59.228, "delta": 79.274, "epsilon": -139.722, "zeta": -79.507, "epsilon_zeta": -60.215, "bb_type": "BI", "chi": -178.260, "glyco_bond": "anti", "C5prime_xyz": [ -1.484, 8.461, 1.564 ], "P_xyz": [ 1.050, 8.842, 2.061 ], "form": "A", "ssZp": 4.764, "Dp": 4.739, "splay_angle": 25.239, "splay_distance": 3.709, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 178.221, "theta": -146.942, "eta_prime": -140.276, "theta_prime": -143.951, "eta_base": -114.525, "theta_base": -103.825, "v0": 3.077, "v1": -26.227, "v2": 38.111, "v3": -37.340, "v4": 21.583, "amplitude": 39.308, "phase_angle": 14.172, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.587, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 124.558, 214.999, 167.012 ], "x_axis": [ 0.095, 0.973, 0.211 ], "y_axis": [ 0.880, -0.181, 0.439 ], "z_axis": [ 0.465, 0.144, -0.873 ], "quaternion": [ 0.100, 0.733, 0.632, 0.231 ] } }, { "index": 659, "index_chain": 659, "chain_name": "A", "nt_resnum": 661, "nt_name": "A", "nt_code": "A", "nt_id": "///A/661", "linked_nts": [ "///A/660", "///A/662" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -66.692, "beta": 156.934, "gamma": 67.044, "delta": 83.466, "epsilon": -130.351, "zeta": -58.036, "epsilon_zeta": -72.315, "bb_type": "BI", "chi": 175.851, "glyco_bond": "anti", "C5prime_xyz": [ -1.232, 8.175, 1.896 ], "P_xyz": [ 1.383, 8.257, 1.899 ], "form": ".", "ssZp": 4.761, "Dp": 4.757, "splay_angle": 34.520, "splay_distance": 5.149, "splay_ratio": 0.298, "d22": null, "d64": null, "eta": 170.092, "theta": -113.066, "eta_prime": -174.314, "theta_prime": -112.261, "eta_base": -116.754, "theta_base": -65.295, "v0": 6.069, "v1": -27.144, "v2": 36.790, "v3": -34.247, "v4": 17.806, "amplitude": 37.296, "phase_angle": 9.447, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.611, "filter_rmsd": 0.042, "frame": { "rmsd": 0.013, "origin": [ 125.344, 217.060, 164.030 ], "x_axis": [ 0.661, 0.603, 0.447 ], "y_axis": [ 0.568, -0.791, 0.228 ], "z_axis": [ 0.491, 0.103, -0.865 ], "quaternion": [ 0.034, 0.911, 0.321, 0.257 ] } }, { "index": 660, "index_chain": 660, "chain_name": "A", "nt_resnum": 662, "nt_name": "U", "nt_code": "U", "nt_id": "///A/662", "linked_nts": [ "///A/661", "///A/663" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -68.531, "beta": 174.763, "gamma": 55.350, "delta": 85.689, "epsilon": -156.823, "zeta": -73.683, "epsilon_zeta": -83.139, "bb_type": "BI", "chi": -170.208, "glyco_bond": "anti", "C5prime_xyz": [ -1.243, 8.521, 1.179 ], "P_xyz": [ 1.305, 8.611, 1.780 ], "form": "A", "ssZp": 4.459, "Dp": 4.501, "splay_angle": 22.137, "splay_distance": 3.552, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 160.030, "theta": -147.374, "eta_prime": -169.855, "theta_prime": -148.288, "eta_base": -91.792, "theta_base": -137.146, "v0": 3.462, "v1": -23.382, "v2": 33.291, "v3": -32.220, "v4": 18.173, "amplitude": 34.159, "phase_angle": 12.944, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.725, "filter_rmsd": 0.105, "frame": { "rmsd": 0.007, "origin": [ 129.988, 218.987, 162.923 ], "x_axis": [ 0.758, -0.443, 0.478 ], "y_axis": [ -0.357, -0.896, -0.264 ], "z_axis": [ 0.546, 0.030, -0.838 ], "quaternion": [ -0.079, 0.934, -0.214, 0.274 ] } }, { "index": 661, "index_chain": 661, "chain_name": "A", "nt_resnum": 663, "nt_name": "G", "nt_code": "G", "nt_id": "///A/663", "linked_nts": [ "///A/662", "///A/664" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -65.479, "beta": 172.833, "gamma": 59.083, "delta": 85.081, "epsilon": -146.558, "zeta": -73.430, "epsilon_zeta": -73.128, "bb_type": "BI", "chi": -167.249, "glyco_bond": "anti", "C5prime_xyz": [ -1.498, 8.808, 0.941 ], "P_xyz": [ 0.967, 9.218, 1.710 ], "form": "A", "ssZp": 4.138, "Dp": 4.309, "splay_angle": 18.802, "splay_distance": 3.111, "splay_ratio": 0.164, "d22": null, "d64": null, "eta": 176.064, "theta": -139.695, "eta_prime": -172.308, "theta_prime": -132.610, "eta_base": -148.724, "theta_base": -109.115, "v0": -4.423, "v1": -16.120, "v2": 29.220, "v3": -32.618, "v4": 23.398, "amplitude": 32.575, "phase_angle": 26.235, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.864, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 131.786, 221.285, 160.898 ], "x_axis": [ 0.476, -0.791, 0.385 ], "y_axis": [ -0.647, -0.611, -0.455 ], "z_axis": [ 0.596, -0.033, -0.803 ], "quaternion": [ -0.124, 0.850, -0.423, 0.288 ] } }, { "index": 662, "index_chain": 662, "chain_name": "A", "nt_resnum": 664, "nt_name": "C", "nt_code": "C", "nt_id": "///A/664", "linked_nts": [ "///A/663", "///A/665" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -54.333, "beta": 173.802, "gamma": 53.611, "delta": 143.040, "epsilon": -165.759, "zeta": -102.067, "epsilon_zeta": -63.693, "bb_type": "BI", "chi": -122.568, "glyco_bond": "anti", "C5prime_xyz": [ -2.135, 8.661, -1.085 ], "P_xyz": [ 0.259, 9.606, -0.628 ], "form": ".", "ssZp": 2.400, "Dp": 2.288, "splay_angle": 36.575, "splay_distance": 6.172, "splay_ratio": 0.316, "d22": null, "d64": null, "eta": 166.675, "theta": -92.831, "eta_prime": -155.469, "theta_prime": -123.936, "eta_base": -121.365, "theta_base": -72.031, "v0": -25.861, "v1": 37.954, "v2": -34.859, "v3": 20.745, "v4": 2.960, "amplitude": 37.932, "phase_angle": 156.779, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.938, "filter_rmsd": 0.059, "frame": { "rmsd": 0.011, "origin": [ 134.448, 221.376, 159.290 ], "x_axis": [ 0.032, -0.988, 0.148 ], "y_axis": [ -0.666, -0.132, -0.735 ], "z_axis": [ 0.746, -0.076, -0.662 ], "quaternion": [ -0.244, 0.675, -0.612, 0.331 ] } }, { "index": 663, "index_chain": 663, "chain_name": "A", "nt_resnum": 665, "nt_name": "G", "nt_code": "G", "nt_id": "///A/665", "linked_nts": [ "///A/664", "///A/666" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": 141.914, "beta": -159.408, "gamma": 170.306, "delta": 79.932, "epsilon": -77.401, "zeta": -139.595, "epsilon_zeta": 62.194, "bb_type": "--", "chi": -153.147, "glyco_bond": "anti", "C5prime_xyz": [ -1.429, 8.808, 0.094 ], "P_xyz": [ -0.190, 9.995, -1.873 ], "form": ".", "ssZp": 3.330, "Dp": 4.576, "splay_angle": 47.014, "splay_distance": 7.520, "splay_ratio": 0.403, "d22": null, "d64": null, "eta": 158.891, "theta": -116.869, "eta_prime": 177.706, "theta_prime": -112.959, "eta_base": -113.345, "theta_base": -90.729, "v0": 1.110, "v1": -23.916, "v2": 36.366, "v3": -36.739, "v4": 22.482, "amplitude": 38.026, "phase_angle": 16.989, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 136.503, 217.535, 154.917 ], "x_axis": [ -0.521, -0.609, -0.598 ], "y_axis": [ -0.392, 0.793, -0.466 ], "z_axis": [ 0.758, -0.008, -0.652 ], "quaternion": [ 0.394, -0.291, 0.861, -0.138 ] } }, { "index": 664, "index_chain": 664, "chain_name": "A", "nt_resnum": 666, "nt_name": "G", "nt_code": "G", "nt_id": "///A/666", "linked_nts": [ "///A/665", "///A/667" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": 154.133, "beta": -122.165, "gamma": 178.399, "delta": 145.441, "epsilon": -96.671, "zeta": 123.242, "epsilon_zeta": 140.087, "bb_type": "--", "chi": -126.783, "glyco_bond": "anti", "C5prime_xyz": [ -1.730, 8.614, -0.871 ], "P_xyz": [ 0.253, 8.374, -2.551 ], "form": ".", "ssZp": 0.844, "Dp": 0.981, "splay_angle": 63.191, "splay_distance": 11.036, "splay_ratio": 0.524, "d22": null, "d64": null, "eta": -152.315, "theta": 83.146, "eta_prime": -141.665, "theta_prime": 78.950, "eta_base": -125.297, "theta_base": 94.176, "v0": -19.813, "v1": 33.713, "v2": -33.993, "v3": 23.445, "v4": -2.495, "amplitude": 35.155, "phase_angle": 165.229, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 135.206, 217.760, 147.513 ], "x_axis": [ -0.948, 0.111, 0.298 ], "y_axis": [ 0.111, 0.994, -0.017 ], "z_axis": [ -0.298, 0.017, -0.955 ], "quaternion": [ -0.151, 0.056, 0.987, -0.000 ] } }, { "index": 665, "index_chain": 665, "chain_name": "A", "nt_resnum": 667, "nt_name": "A", "nt_code": "A", "nt_id": "///A/667", "linked_nts": [ "///A/666", "///A/668" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor", "alpha": -42.138, "beta": -176.404, "gamma": -51.977, "delta": 83.536, "epsilon": -144.497, "zeta": -39.828, "epsilon_zeta": -104.669, "bb_type": "BI", "chi": -171.968, "glyco_bond": "anti", "C5prime_xyz": [ -1.703, 8.476, 1.194 ], "P_xyz": [ -1.009, 10.383, 2.832 ], "form": ".", "ssZp": 4.644, "Dp": 4.670, "splay_angle": 49.021, "splay_distance": 7.274, "splay_ratio": 0.416, "d22": null, "d64": null, "eta": 149.181, "theta": -144.672, "eta_prime": 130.153, "theta_prime": -125.538, "eta_base": 140.469, "theta_base": -68.263, "v0": 3.297, "v1": -25.103, "v2": 36.036, "v3": -35.111, "v4": 20.087, "amplitude": 37.073, "phase_angle": 13.584, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "0k", "suiteness": 0.020, "filter_rmsd": 0.039, "frame": { "rmsd": 0.016, "origin": [ 145.229, 218.404, 152.085 ], "x_axis": [ -0.766, -0.638, -0.077 ], "y_axis": [ -0.538, 0.702, -0.466 ], "z_axis": [ 0.351, -0.315, -0.882 ], "quaternion": [ 0.117, -0.321, 0.915, -0.213 ] } }, { "index": 666, "index_chain": 666, "chain_name": "A", "nt_resnum": 668, "nt_name": "G", "nt_code": "G", "nt_id": "///A/668", "linked_nts": [ "///A/667", "///A/669" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,cap-donor", "alpha": -82.556, "beta": 170.277, "gamma": 73.925, "delta": 83.412, "epsilon": -147.899, "zeta": -70.541, "epsilon_zeta": -77.358, "bb_type": "BI", "chi": 177.883, "glyco_bond": "anti", "C5prime_xyz": [ -1.514, 8.352, 1.782 ], "P_xyz": [ 1.079, 8.682, 2.010 ], "form": "A", "ssZp": 4.608, "Dp": 4.621, "splay_angle": 25.449, "splay_distance": 4.013, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 164.794, "theta": -140.113, "eta_prime": -157.269, "theta_prime": -141.252, "eta_base": -79.500, "theta_base": -118.910, "v0": 2.702, "v1": -23.861, "v2": 34.745, "v3": -34.124, "v4": 19.818, "amplitude": 35.866, "phase_angle": 14.362, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.143, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 141.431, 215.869, 146.423 ], "x_axis": [ -0.725, 0.506, -0.466 ], "y_axis": [ 0.509, 0.850, 0.131 ], "z_axis": [ 0.463, -0.143, -0.875 ], "quaternion": [ 0.250, 0.273, 0.929, -0.003 ] } }, { "index": 667, "index_chain": 667, "chain_name": "A", "nt_resnum": 669, "nt_name": "C", "nt_code": "C", "nt_id": "///A/669", "linked_nts": [ "///A/668", "///A/670" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -69.814, "beta": -177.346, "gamma": 57.325, "delta": 82.597, "epsilon": -157.556, "zeta": -75.529, "epsilon_zeta": -82.028, "bb_type": "BI", "chi": -168.711, "glyco_bond": "anti", "C5prime_xyz": [ -1.351, 8.728, 1.033 ], "P_xyz": [ 1.117, 9.089, 1.832 ], "form": "A", "ssZp": 4.373, "Dp": 4.456, "splay_angle": 20.979, "splay_distance": 3.251, "splay_ratio": 0.182, "d22": 4.790, "d64": 4.286, "eta": 172.060, "theta": -153.763, "eta_prime": -174.022, "theta_prime": -152.640, "eta_base": -135.000, "theta_base": -132.304, "v0": -0.228, "v1": -21.448, "v2": 33.664, "v3": -34.716, "v4": 22.060, "amplitude": 35.591, "phase_angle": 18.941, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.934, "filter_rmsd": 0.064, "frame": { "rmsd": 0.006, "origin": [ 141.364, 213.855, 142.953 ], "x_axis": [ -0.310, 0.918, -0.246 ], "y_axis": [ 0.817, 0.390, 0.425 ], "z_axis": [ 0.486, -0.069, -0.871 ], "quaternion": [ 0.228, 0.541, 0.802, 0.111 ] } }, { "index": 668, "index_chain": 668, "chain_name": "A", "nt_resnum": 670, "nt_name": "C", "nt_code": "C", "nt_id": "///A/670", "linked_nts": [ "///A/669", "///A/671" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -84.554, "beta": -178.052, "gamma": 60.941, "delta": 84.391, "epsilon": -157.877, "zeta": -64.112, "epsilon_zeta": -93.765, "bb_type": "BI", "chi": -163.030, "glyco_bond": "anti", "C5prime_xyz": [ -1.036, 8.639, 0.717 ], "P_xyz": [ 1.577, 8.751, 1.000 ], "form": "A", "ssZp": 4.441, "Dp": 4.556, "splay_angle": 23.801, "splay_distance": 3.728, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 162.541, "theta": -140.573, "eta_prime": 172.808, "theta_prime": -140.587, "eta_base": -154.631, "theta_base": -115.325, "v0": 4.572, "v1": -25.090, "v2": 34.902, "v3": -33.177, "v4": 18.084, "amplitude": 35.600, "phase_angle": 11.369, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.616, "filter_rmsd": 0.068, "frame": { "rmsd": 0.011, "origin": [ 141.772, 212.604, 139.980 ], "x_axis": [ 0.136, 0.988, 0.079 ], "y_axis": [ 0.890, -0.157, 0.428 ], "z_axis": [ 0.435, 0.012, -0.900 ], "quaternion": [ 0.140, 0.740, 0.634, 0.174 ] } }, { "index": 669, "index_chain": 669, "chain_name": "A", "nt_resnum": 671, "nt_name": "G", "nt_code": "G", "nt_id": "///A/671", "linked_nts": [ "///A/670", "///A/672" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop", "alpha": -74.014, "beta": -177.738, "gamma": 58.109, "delta": 82.500, "epsilon": -150.840, "zeta": -75.962, "epsilon_zeta": -74.878, "bb_type": "BI", "chi": -156.975, "glyco_bond": "anti", "C5prime_xyz": [ -1.175, 8.736, 0.368 ], "P_xyz": [ 1.422, 9.049, 0.576 ], "form": "A", "ssZp": 4.319, "Dp": 4.597, "splay_angle": 17.808, "splay_distance": 2.875, "splay_ratio": 0.156, "d22": null, "d64": null, "eta": 170.409, "theta": -148.470, "eta_prime": -174.821, "theta_prime": -147.894, "eta_base": -134.238, "theta_base": -131.350, "v0": 3.001, "v1": -24.452, "v2": 35.420, "v3": -34.652, "v4": 19.978, "amplitude": 36.504, "phase_angle": 13.999, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.841, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 142.267, 213.707, 136.453 ], "x_axis": [ 0.599, 0.722, 0.347 ], "y_axis": [ 0.680, -0.687, 0.255 ], "z_axis": [ 0.423, 0.083, -0.902 ], "quaternion": [ 0.048, 0.893, 0.393, 0.215 ] } }, { "index": 670, "index_chain": 670, "chain_name": "A", "nt_resnum": 672, "nt_name": "C", "nt_code": "C", "nt_id": "///A/672", "linked_nts": [ "///A/671", "///A/673" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": -62.298, "beta": 165.047, "gamma": 57.758, "delta": 81.810, "epsilon": -135.173, "zeta": 69.835, "epsilon_zeta": 154.992, "bb_type": "--", "chi": -150.769, "glyco_bond": "anti", "C5prime_xyz": [ -1.537, 8.847, -0.046 ], "P_xyz": [ 1.010, 9.334, -0.355 ], "form": ".", "ssZp": 3.994, "Dp": 4.611, "splay_angle": 112.372, "splay_distance": 15.269, "splay_ratio": 0.831, "d22": null, "d64": null, "eta": 172.304, "theta": -4.339, "eta_prime": -175.714, "theta_prime": -61.292, "eta_base": -148.105, "theta_base": -124.194, "v0": -1.278, "v1": -20.842, "v2": 33.711, "v3": -35.395, "v4": 23.180, "amplitude": 36.015, "phase_angle": 20.606, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.931, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 142.613, 214.981, 133.899 ], "x_axis": [ 0.817, 0.359, 0.451 ], "y_axis": [ 0.455, -0.882, -0.122 ], "z_axis": [ 0.354, 0.305, -0.884 ], "quaternion": [ -0.113, 0.946, 0.215, 0.213 ] } }, { "index": 671, "index_chain": 671, "chain_name": "A", "nt_resnum": 673, "nt_name": "A", "nt_code": "A", "nt_id": "///A/673", "linked_nts": [ "///A/672", "///A/674" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,junction-loop,splayed-apart", "alpha": -105.841, "beta": -119.727, "gamma": 170.428, "delta": 149.876, "epsilon": -103.671, "zeta": 167.392, "epsilon_zeta": 88.936, "bb_type": "BII", "chi": -123.611, "glyco_bond": "anti", "C5prime_xyz": [ -2.300, 8.575, -0.964 ], "P_xyz": [ -0.146, 8.517, -2.448 ], "form": ".", "ssZp": 0.962, "Dp": 0.990, "splay_angle": 49.927, "splay_distance": 7.790, "splay_ratio": 0.427, "d22": null, "d64": null, "eta": -4.559, "theta": 144.254, "eta_prime": 57.903, "theta_prime": 149.197, "eta_base": 89.528, "theta_base": -152.344, "v0": -24.466, "v1": 39.306, "v2": -38.211, "v3": 25.069, "v4": -0.597, "amplitude": 40.167, "phase_angle": 162.046, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 150.229, 211.083, 121.252 ], "x_axis": [ -0.813, 0.465, -0.352 ], "y_axis": [ -0.443, -0.100, 0.891 ], "z_axis": [ 0.379, 0.880, 0.287 ], "quaternion": [ 0.306, 0.009, 0.597, 0.742 ] } }, { "index": 672, "index_chain": 672, "chain_name": "A", "nt_resnum": 674, "nt_name": "G", "nt_code": "G", "nt_id": "///A/674", "linked_nts": [ "///A/673", "///A/675" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop", "alpha": -57.283, "beta": 123.786, "gamma": 52.139, "delta": 81.655, "epsilon": -153.564, "zeta": -74.076, "epsilon_zeta": -79.487, "bb_type": "BI", "chi": -163.631, "glyco_bond": "anti", "C5prime_xyz": [ -1.231, 8.706, 0.759 ], "P_xyz": [ 1.291, 8.329, 0.200 ], "form": "A", "ssZp": 4.466, "Dp": 4.582, "splay_angle": 21.199, "splay_distance": 3.347, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": -176.215, "theta": -137.180, "eta_prime": -166.152, "theta_prime": -145.694, "eta_base": -109.362, "theta_base": -131.763, "v0": 2.549, "v1": -24.404, "v2": 35.768, "v3": -35.280, "v4": 20.639, "amplitude": 36.986, "phase_angle": 14.741, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4a", "suiteness": 0.263, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 156.296, 213.781, 125.327 ], "x_axis": [ -0.263, 0.624, 0.736 ], "y_axis": [ -0.447, -0.755, 0.481 ], "z_axis": [ 0.855, -0.203, 0.477 ], "quaternion": [ 0.339, 0.504, 0.088, 0.790 ] } }, { "index": 673, "index_chain": 673, "chain_name": "A", "nt_resnum": 675, "nt_name": "C", "nt_code": "C", "nt_id": "///A/675", "linked_nts": [ "///A/674", "///A/676" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,phosphate", "alpha": -60.936, "beta": 173.149, "gamma": 51.002, "delta": 82.104, "epsilon": -142.025, "zeta": -72.162, "epsilon_zeta": -69.864, "bb_type": "BI", "chi": -160.325, "glyco_bond": "anti", "C5prime_xyz": [ -1.331, 8.751, 0.551 ], "P_xyz": [ 1.236, 9.112, 0.871 ], "form": "A", "ssZp": 4.371, "Dp": 4.625, "splay_angle": 21.997, "splay_distance": 3.601, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 171.326, "theta": -138.298, "eta_prime": -177.329, "theta_prime": -137.291, "eta_base": -143.402, "theta_base": -109.358, "v0": 1.073, "v1": -22.989, "v2": 34.966, "v3": -35.331, "v4": 21.594, "amplitude": 36.560, "phase_angle": 16.982, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.961, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 159.405, 214.524, 126.318 ], "x_axis": [ -0.522, 0.176, 0.835 ], "y_axis": [ -0.188, -0.978, 0.088 ], "z_axis": [ 0.832, -0.111, 0.544 ], "quaternion": [ 0.104, 0.478, -0.006, 0.872 ] } }, { "index": 674, "index_chain": 674, "chain_name": "A", "nt_resnum": 676, "nt_name": "G", "nt_code": "G", "nt_id": "///A/676", "linked_nts": [ "///A/675", "///A/677" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor", "alpha": -61.034, "beta": 166.265, "gamma": 54.513, "delta": 77.972, "epsilon": -130.481, "zeta": -66.566, "epsilon_zeta": -63.915, "bb_type": "BI", "chi": -157.335, "glyco_bond": "anti", "C5prime_xyz": [ -1.667, 8.842, 0.297 ], "P_xyz": [ 0.829, 9.567, 0.084 ], "form": ".", "ssZp": 4.243, "Dp": 4.716, "splay_angle": 77.678, "splay_distance": 11.223, "splay_ratio": 0.628, "d22": null, "d64": null, "eta": 168.308, "theta": -113.618, "eta_prime": -177.121, "theta_prime": -157.557, "eta_base": -135.061, "theta_base": 145.926, "v0": -1.099, "v1": -22.693, "v2": 36.457, "v3": -38.140, "v4": 24.747, "amplitude": 38.847, "phase_angle": 20.205, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.938, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 161.411, 215.477, 129.153 ], "x_axis": [ -0.615, -0.363, 0.700 ], "y_axis": [ 0.222, -0.932, -0.288 ], "z_axis": [ 0.756, -0.022, 0.654 ], "quaternion": [ -0.163, 0.407, -0.086, 0.895 ] } }, { "index": 675, "index_chain": 675, "chain_name": "A", "nt_resnum": 677, "nt_name": "A", "nt_code": "A", "nt_id": "///A/677", "linked_nts": [ "///A/676", "///A/678" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": 176.051, "beta": 149.616, "gamma": 42.510, "delta": 83.649, "epsilon": -141.231, "zeta": -74.029, "epsilon_zeta": -67.202, "bb_type": "BI", "chi": -170.986, "glyco_bond": "anti", "C5prime_xyz": [ -1.313, 8.502, 1.203 ], "P_xyz": [ 1.280, 8.426, 1.575 ], "form": "A", "ssZp": 4.596, "Dp": 4.658, "splay_angle": 23.187, "splay_distance": 3.544, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 14.989, "theta": -132.409, "eta_prime": 43.870, "theta_prime": -131.799, "eta_base": 27.695, "theta_base": -90.424, "v0": 3.692, "v1": -24.524, "v2": 34.819, "v3": -33.674, "v4": 18.927, "amplitude": 35.709, "phase_angle": 12.820, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.774, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 171.852, 216.078, 125.081 ], "x_axis": [ -0.038, -0.511, -0.859 ], "y_axis": [ -0.292, -0.816, 0.498 ], "z_axis": [ -0.956, 0.270, -0.118 ], "quaternion": [ 0.083, 0.688, -0.292, -0.659 ] } }, { "index": 676, "index_chain": 676, "chain_name": "A", "nt_resnum": 678, "nt_name": "A", "nt_code": "A", "nt_id": "///A/678", "linked_nts": [ "///A/677", "///A/679" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate", "alpha": -57.985, "beta": 163.526, "gamma": 51.315, "delta": 84.476, "epsilon": -151.629, "zeta": -80.062, "epsilon_zeta": -71.567, "bb_type": "BI", "chi": -165.170, "glyco_bond": "anti", "C5prime_xyz": [ -1.278, 8.581, 0.860 ], "P_xyz": [ 1.328, 8.702, 1.087 ], "form": "A", "ssZp": 4.484, "Dp": 4.578, "splay_angle": 19.744, "splay_distance": 3.040, "splay_ratio": 0.172, "d22": null, "d64": null, "eta": 164.404, "theta": -149.312, "eta_prime": -174.983, "theta_prime": -149.888, "eta_base": -111.282, "theta_base": -131.412, "v0": 3.280, "v1": -23.991, "v2": 34.442, "v3": -33.538, "v4": 19.094, "amplitude": 35.414, "phase_angle": 13.455, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.889, "filter_rmsd": 0.040, "frame": { "rmsd": 0.008, "origin": [ 169.020, 216.251, 122.957 ], "x_axis": [ -0.215, -0.943, -0.255 ], "y_axis": [ -0.239, -0.202, 0.950 ], "z_axis": [ -0.947, 0.265, -0.182 ], "quaternion": [ -0.317, -0.541, 0.546, 0.556 ] } }, { "index": 677, "index_chain": 677, "chain_name": "A", "nt_resnum": 679, "nt_name": "A", "nt_code": "A", "nt_id": "///A/679", "linked_nts": [ "///A/678", "///A/680" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate", "alpha": -68.247, "beta": 166.536, "gamma": 60.122, "delta": 84.810, "epsilon": -111.049, "zeta": -58.567, "epsilon_zeta": -52.482, "bb_type": "--", "chi": -157.651, "glyco_bond": "anti", "C5prime_xyz": [ -1.288, 8.634, 0.414 ], "P_xyz": [ 1.312, 8.808, 0.216 ], "form": ".", "ssZp": 4.084, "Dp": 4.717, "splay_angle": 59.396, "splay_distance": 9.225, "splay_ratio": 0.496, "d22": null, "d64": null, "eta": 177.916, "theta": -96.055, "eta_prime": -173.853, "theta_prime": -84.552, "eta_base": -145.862, "theta_base": -57.155, "v0": 3.646, "v1": -24.401, "v2": 34.774, "v3": -33.655, "v4": 18.953, "amplitude": 35.677, "phase_angle": 12.925, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.850, "filter_rmsd": 0.037, "frame": { "rmsd": 0.007, "origin": [ 166.726, 217.302, 121.262 ], "x_axis": [ -0.347, -0.910, 0.228 ], "y_axis": [ -0.257, 0.326, 0.910 ], "z_axis": [ -0.902, 0.257, -0.347 ], "quaternion": [ -0.398, -0.411, 0.711, 0.410 ] } }, { "index": 678, "index_chain": 678, "chain_name": "A", "nt_resnum": 680, "nt_name": "G", "nt_code": "G", "nt_id": "///A/680", "linked_nts": [ "///A/679", "///A/681" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": -51.137, "beta": 144.944, "gamma": 83.627, "delta": 81.535, "epsilon": -149.091, "zeta": -80.163, "epsilon_zeta": -68.929, "bb_type": "BI", "chi": -166.021, "glyco_bond": "anti", "C5prime_xyz": [ -1.356, 8.728, 0.886 ], "P_xyz": [ 1.009, 9.142, -0.155 ], "form": "A", "ssZp": 4.498, "Dp": 4.596, "splay_angle": 22.603, "splay_distance": 3.559, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 175.180, "theta": -149.203, "eta_prime": -138.240, "theta_prime": -154.748, "eta_base": -78.244, "theta_base": -133.095, "v0": 1.191, "v1": -23.443, "v2": 35.593, "v3": -35.833, "v4": 21.867, "amplitude": 37.180, "phase_angle": 16.796, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.010, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 159.511, 214.330, 126.182 ], "x_axis": [ -0.350, 0.152, 0.924 ], "y_axis": [ 0.274, 0.960, -0.054 ], "z_axis": [ -0.896, 0.234, -0.378 ], "quaternion": [ 0.555, -0.130, -0.820, -0.055 ] } }, { "index": 679, "index_chain": 679, "chain_name": "A", "nt_resnum": 681, "nt_name": "C", "nt_code": "C", "nt_id": "///A/681", "linked_nts": [ "///A/680", "///A/682" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop", "alpha": -50.470, "beta": 164.082, "gamma": 49.325, "delta": 82.017, "epsilon": -160.429, "zeta": -83.532, "epsilon_zeta": -76.896, "bb_type": "BI", "chi": -163.470, "glyco_bond": "anti", "C5prime_xyz": [ -1.431, 8.746, 0.743 ], "P_xyz": [ 1.133, 9.076, 1.082 ], "form": "A", "ssZp": 4.393, "Dp": 4.479, "splay_angle": 22.355, "splay_distance": 3.723, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 170.837, "theta": -123.939, "eta_prime": -174.093, "theta_prime": -132.160, "eta_base": -134.137, "theta_base": -97.603, "v0": -0.216, "v1": -21.734, "v2": 34.169, "v3": -35.295, "v4": 22.375, "amplitude": 36.132, "phase_angle": 18.972, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.764, "filter_rmsd": 0.060, "frame": { "rmsd": 0.006, "origin": [ 156.047, 213.844, 125.521 ], "x_axis": [ -0.125, 0.615, 0.778 ], "y_axis": [ 0.393, 0.751, -0.531 ], "z_axis": [ -0.911, 0.240, -0.335 ], "quaternion": [ 0.568, -0.339, -0.743, 0.098 ] } }, { "index": 680, "index_chain": 680, "chain_name": "A", "nt_resnum": 682, "nt_name": "G", "nt_code": "G", "nt_id": "///A/682", "linked_nts": [ "///A/681", "///A/683" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate", "alpha": 146.633, "beta": -140.684, "gamma": 173.916, "delta": 82.150, "epsilon": -168.736, "zeta": -114.333, "epsilon_zeta": -54.403, "bb_type": "BI", "chi": 173.084, "glyco_bond": "anti", "C5prime_xyz": [ -1.581, 8.254, 2.034 ], "P_xyz": [ 0.392, 9.705, 1.148 ], "form": ".", "ssZp": 4.220, "Dp": 4.431, "splay_angle": 67.477, "splay_distance": 9.788, "splay_ratio": 0.558, "d22": null, "d64": null, "eta": 159.874, "theta": 133.273, "eta_prime": -174.061, "theta_prime": 136.749, "eta_base": -110.377, "theta_base": 133.698, "v0": 2.341, "v1": -23.946, "v2": 35.276, "v3": -34.946, "v4": 20.572, "amplitude": 36.532, "phase_angle": 15.069, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.634, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 152.725, 215.035, 126.706 ], "x_axis": [ 0.176, 0.931, 0.319 ], "y_axis": [ 0.356, 0.241, -0.903 ], "z_axis": [ -0.918, 0.272, -0.289 ], "quaternion": [ 0.531, -0.553, -0.582, 0.271 ] } }, { "index": 681, "index_chain": 681, "chain_name": "A", "nt_resnum": 683, "nt_name": "A", "nt_code": "A", "nt_id": "///A/683", "linked_nts": [ "///A/682", "///A/684" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate", "alpha": -99.984, "beta": 137.532, "gamma": 156.713, "delta": 142.925, "epsilon": 21.225, "zeta": -57.837, "epsilon_zeta": -280.938, "bb_type": "--", "chi": -106.181, "glyco_bond": "anti", "C5prime_xyz": [ -1.678, 8.101, -1.842 ], "P_xyz": [ -0.733, 8.257, -4.268 ], "form": ".", "ssZp": -0.310, "Dp": 0.734, "splay_angle": 55.692, "splay_distance": 8.164, "splay_ratio": 0.468, "d22": null, "d64": null, "eta": -23.199, "theta": 31.909, "eta_prime": -87.800, "theta_prime": 79.751, "eta_base": -148.195, "theta_base": 131.607, "v0": -15.486, "v1": 29.672, "v2": -31.812, "v3": 23.740, "v4": -5.414, "amplitude": 32.235, "phase_angle": 170.717, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 151.303, 205.659, 124.283 ], "x_axis": [ -0.670, 0.258, 0.696 ], "y_axis": [ -0.500, 0.536, -0.680 ], "z_axis": [ -0.549, -0.804, -0.230 ], "quaternion": [ -0.399, -0.077, 0.780, -0.475 ] } }, { "index": 682, "index_chain": 682, "chain_name": "A", "nt_resnum": 684, "nt_name": "G", "nt_code": "G", "nt_id": "///A/684", "linked_nts": [ "///A/683", "///A/685" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop", "alpha": 175.107, "beta": -95.796, "gamma": 170.864, "delta": 85.967, "epsilon": -156.617, "zeta": -62.491, "epsilon_zeta": -94.126, "bb_type": "BI", "chi": -153.714, "glyco_bond": "anti", "C5prime_xyz": [ -0.664, 8.540, 0.226 ], "P_xyz": [ 0.360, 8.223, -2.176 ], "form": "A", "ssZp": 4.297, "Dp": 4.619, "splay_angle": 18.507, "splay_distance": 2.872, "splay_ratio": 0.161, "d22": null, "d64": null, "eta": -154.740, "theta": -136.801, "eta_prime": -146.363, "theta_prime": -159.468, "eta_base": -111.896, "theta_base": -136.091, "v0": 10.514, "v1": -29.976, "v2": 37.017, "v3": -31.846, "v4": 13.540, "amplitude": 37.051, "phase_angle": 2.461, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 157.860, 203.793, 119.791 ], "x_axis": [ 0.052, -0.595, -0.802 ], "y_axis": [ -0.513, 0.673, -0.533 ], "z_axis": [ 0.857, 0.439, -0.270 ], "quaternion": [ 0.603, -0.403, 0.688, -0.034 ] } }, { "index": 683, "index_chain": 683, "chain_name": "A", "nt_resnum": 685, "nt_name": "U", "nt_code": "U", "nt_id": "///A/685", "linked_nts": [ "///A/684", "///A/686" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -77.799, "beta": 165.373, "gamma": 69.091, "delta": 84.463, "epsilon": -138.700, "zeta": -86.145, "epsilon_zeta": -52.555, "bb_type": "BI", "chi": -162.625, "glyco_bond": "anti", "C5prime_xyz": [ -1.235, 8.622, 0.708 ], "P_xyz": [ 1.364, 8.826, 0.390 ], "form": "A", "ssZp": 4.435, "Dp": 4.655, "splay_angle": 22.757, "splay_distance": 3.547, "splay_ratio": 0.197, "d22": 4.585, "d64": 3.880, "eta": 166.962, "theta": -147.276, "eta_prime": -173.539, "theta_prime": -148.147, "eta_base": -123.870, "theta_base": -133.114, "v0": 4.168, "v1": -24.762, "v2": 34.789, "v3": -33.327, "v4": 18.453, "amplitude": 35.573, "phase_angle": 12.047, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.513, "filter_rmsd": 0.107, "frame": { "rmsd": 0.008, "origin": [ 160.451, 203.869, 118.555 ], "x_axis": [ -0.256, -0.156, -0.954 ], "y_axis": [ -0.324, 0.944, -0.067 ], "z_axis": [ 0.911, 0.292, -0.292 ], "quaternion": [ 0.591, -0.152, 0.789, 0.071 ] } }, { "index": 684, "index_chain": 684, "chain_name": "A", "nt_resnum": 686, "nt_name": "C", "nt_code": "C", "nt_id": "///A/686", "linked_nts": [ "///A/685", "///A/687" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": -74.003, "beta": 178.265, "gamma": 49.869, "delta": 85.562, "epsilon": -146.512, "zeta": -119.729, "epsilon_zeta": -26.783, "bb_type": "--", "chi": -163.699, "glyco_bond": "anti", "C5prime_xyz": [ -1.046, 8.645, 0.783 ], "P_xyz": [ 1.477, 8.715, 1.477 ], "form": "A", "ssZp": 4.378, "Dp": 4.565, "splay_angle": 17.122, "splay_distance": 2.733, "splay_ratio": 0.149, "d22": 4.202, "d64": 3.679, "eta": 162.081, "theta": -141.276, "eta_prime": 169.579, "theta_prime": -135.867, "eta_base": -163.413, "theta_base": -125.993, "v0": 3.521, "v1": -23.692, "v2": 33.715, "v3": -32.615, "v4": 18.390, "amplitude": 34.590, "phase_angle": 12.914, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.753, "filter_rmsd": 0.067, "frame": { "rmsd": 0.009, "origin": [ 163.862, 203.806, 117.586 ], "x_axis": [ -0.810, 0.200, -0.551 ], "y_axis": [ -0.076, 0.896, 0.437 ], "z_axis": [ 0.582, 0.396, -0.711 ], "quaternion": [ 0.307, 0.034, 0.924, 0.225 ] } }, { "index": 685, "index_chain": 685, "chain_name": "A", "nt_resnum": 687, "nt_name": "U", "nt_code": "U", "nt_id": "///A/687", "linked_nts": [ "///A/686", "///A/688" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": 40.364, "beta": 111.820, "gamma": -10.956, "delta": 77.294, "epsilon": 61.638, "zeta": 106.552, "epsilon_zeta": -44.914, "bb_type": "--", "chi": -132.963, "glyco_bond": "anti", "C5prime_xyz": [ -1.768, 8.640, -1.098 ], "P_xyz": [ 0.613, 9.230, -0.159 ], "form": ".", "ssZp": 2.138, "Dp": 2.903, "splay_angle": 31.756, "splay_distance": 5.278, "splay_ratio": 0.294, "d22": null, "d64": null, "eta": -173.836, "theta": -121.987, "eta_prime": -157.759, "theta_prime": -122.893, "eta_base": -142.492, "theta_base": -55.624, "v0": 0.103, "v1": -22.356, "v2": 35.016, "v3": -35.739, "v4": 22.501, "amplitude": 36.895, "phase_angle": 18.367, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 165.400, 203.691, 115.330 ], "x_axis": [ -0.887, 0.458, -0.065 ], "y_axis": [ 0.389, 0.815, 0.429 ], "z_axis": [ 0.250, 0.355, -0.901 ], "quaternion": [ 0.083, 0.223, 0.949, 0.207 ] } }, { "index": 686, "index_chain": 686, "chain_name": "A", "nt_resnum": 688, "nt_name": "G", "nt_code": "G", "nt_id": "///A/688", "linked_nts": [ "///A/687", "///A/689" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart", "alpha": -136.277, "beta": 130.827, "gamma": 58.683, "delta": 81.598, "epsilon": -128.545, "zeta": -104.544, "epsilon_zeta": -24.002, "bb_type": "--", "chi": -120.802, "glyco_bond": "anti", "C5prime_xyz": [ -1.373, 8.297, -1.739 ], "P_xyz": [ 0.563, 7.272, -3.178 ], "form": ".", "ssZp": 2.186, "Dp": 4.778, "splay_angle": 100.220, "splay_distance": 12.830, "splay_ratio": 0.775, "d22": null, "d64": null, "eta": 146.799, "theta": -109.580, "eta_prime": 176.806, "theta_prime": -150.529, "eta_base": -110.015, "theta_base": 132.342, "v0": 6.360, "v1": -27.569, "v2": 37.238, "v3": -34.588, "v4": 17.819, "amplitude": 37.719, "phase_angle": 9.159, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 165.947, 208.820, 114.213 ], "x_axis": [ -0.152, 0.942, 0.298 ], "y_axis": [ 0.987, 0.159, 0.002 ], "z_axis": [ -0.045, 0.295, -0.955 ], "quaternion": [ -0.114, 0.641, 0.753, 0.099 ] } }, { "index": 687, "index_chain": 687, "chain_name": "A", "nt_resnum": 689, "nt_name": "A", "nt_code": "A", "nt_id": "///A/689", "linked_nts": [ "///A/688", "///A/690" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,splayed-apart", "alpha": 167.524, "beta": -139.384, "gamma": 30.550, "delta": 80.186, "epsilon": 164.053, "zeta": 36.023, "epsilon_zeta": 128.030, "bb_type": "--", "chi": 12.843, "glyco_bond": "syn", "C5prime_xyz": [ -5.491, 3.766, -0.905 ], "P_xyz": [ -5.837, 2.091, -2.881 ], "form": ".", "ssZp": -4.076, "Dp": 4.094, "splay_angle": 27.834, "splay_distance": 4.760, "splay_ratio": 0.249, "d22": null, "d64": null, "eta": 30.653, "theta": -103.523, "eta_prime": 47.535, "theta_prime": -108.981, "eta_base": 34.746, "theta_base": -126.986, "v0": -2.226, "v1": -20.328, "v2": 33.750, "v3": -36.045, "v4": 24.147, "amplitude": 36.415, "phase_angle": 22.059, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 175.988, 205.578, 106.914 ], "x_axis": [ -0.405, -0.727, -0.554 ], "y_axis": [ -0.751, 0.610, -0.252 ], "z_axis": [ 0.521, 0.314, -0.794 ], "quaternion": [ 0.321, -0.441, 0.838, 0.019 ] } }, { "index": 688, "index_chain": 688, "chain_name": "A", "nt_resnum": 690, "nt_name": "A", "nt_code": "A", "nt_id": "///A/690", "linked_nts": [ "///A/689", "///A/691" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart", "alpha": -168.393, "beta": 112.789, "gamma": 140.277, "delta": 86.772, "epsilon": -95.514, "zeta": -167.455, "epsilon_zeta": 71.941, "bb_type": "BII", "chi": 171.219, "glyco_bond": "anti", "C5prime_xyz": [ -1.781, 8.186, 2.092 ], "P_xyz": [ -0.548, 10.140, 0.868 ], "form": ".", "ssZp": 4.348, "Dp": 4.438, "splay_angle": 86.102, "splay_distance": 12.573, "splay_ratio": 0.683, "d22": null, "d64": null, "eta": 166.944, "theta": 132.860, "eta_prime": -168.156, "theta_prime": 111.107, "eta_base": -172.164, "theta_base": 77.815, "v0": -0.225, "v1": -19.470, "v2": 30.519, "v3": -31.519, "v4": 20.089, "amplitude": 32.280, "phase_angle": 19.012, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 172.852, 202.016, 107.281 ], "x_axis": [ 0.852, 0.001, 0.523 ], "y_axis": [ -0.173, 0.945, 0.279 ], "z_axis": [ -0.494, -0.328, 0.805 ], "quaternion": [ 0.949, 0.160, -0.268, 0.046 ] } }, { "index": 689, "index_chain": 689, "chain_name": "A", "nt_resnum": 691, "nt_name": "U", "nt_code": "U", "nt_id": "///A/691", "linked_nts": [ "///A/690", "///A/692" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 51.525, "beta": -142.030, "gamma": 149.414, "delta": 82.794, "epsilon": -153.126, "zeta": 48.363, "epsilon_zeta": 158.512, "bb_type": "--", "chi": -177.970, "glyco_bond": "anti", "C5prime_xyz": [ -1.351, 8.403, 1.594 ], "P_xyz": [ 1.000, 9.113, 0.682 ], "form": ".", "ssZp": 4.544, "Dp": 4.581, "splay_angle": 99.163, "splay_distance": 14.899, "splay_ratio": 0.765, "d22": null, "d64": null, "eta": 74.695, "theta": 3.777, "eta_prime": 83.127, "theta_prime": -28.700, "eta_base": 79.603, "theta_base": -33.268, "v0": 3.382, "v1": -24.035, "v2": 34.367, "v3": -33.420, "v4": 18.914, "amplitude": 35.308, "phase_angle": 13.256, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.005, "origin": [ 165.394, 210.610, 101.933 ], "x_axis": [ 0.945, 0.268, 0.186 ], "y_axis": [ -0.084, -0.352, 0.932 ], "z_axis": [ 0.315, -0.897, -0.310 ], "quaternion": [ 0.566, 0.807, 0.057, 0.155 ] } }, { "index": 690, "index_chain": 690, "chain_name": "A", "nt_resnum": 692, "nt_name": "A", "nt_code": "A", "nt_id": "///A/692", "linked_nts": [ "///A/691", "///A/693" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": 60.494, "beta": 130.216, "gamma": -133.958, "delta": 86.969, "epsilon": -106.057, "zeta": -86.493, "epsilon_zeta": -19.564, "bb_type": "--", "chi": -178.017, "glyco_bond": "anti", "C5prime_xyz": [ -1.023, 8.177, 1.630 ], "P_xyz": [ -0.875, 10.554, 2.697 ], "form": ".", "ssZp": 4.671, "Dp": 4.776, "splay_angle": 29.741, "splay_distance": 4.533, "splay_ratio": 0.257, "d22": null, "d64": null, "eta": 107.913, "theta": -171.768, "eta_prime": 137.087, "theta_prime": -152.004, "eta_base": -165.557, "theta_base": -82.253, "v0": 8.605, "v1": -27.581, "v2": 35.053, "v3": -31.107, "v4": 14.249, "amplitude": 35.179, "phase_angle": 4.858, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 170.673, 201.983, 112.874 ], "x_axis": [ -0.224, 0.826, 0.517 ], "y_axis": [ -0.573, 0.317, -0.756 ], "z_axis": [ -0.788, -0.466, 0.402 ], "quaternion": [ 0.611, -0.119, -0.534, 0.572 ] } }, { "index": 691, "index_chain": 691, "chain_name": "A", "nt_resnum": 693, "nt_name": "G", "nt_code": "G", "nt_id": "///A/693", "linked_nts": [ "///A/692", "///A/694" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": -48.895, "beta": 133.389, "gamma": 60.653, "delta": 80.864, "epsilon": -145.773, "zeta": -70.137, "epsilon_zeta": -75.636, "bb_type": "BI", "chi": -175.257, "glyco_bond": "anti", "C5prime_xyz": [ -1.527, 8.546, 1.388 ], "P_xyz": [ 1.032, 8.647, 0.869 ], "form": "A", "ssZp": 4.681, "Dp": 4.671, "splay_angle": 23.501, "splay_distance": 3.774, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 152.091, "theta": -132.570, "eta_prime": -174.764, "theta_prime": -138.958, "eta_base": -95.343, "theta_base": -115.829, "v0": 2.062, "v1": -24.455, "v2": 36.335, "v3": -36.128, "v4": 21.501, "amplitude": 37.715, "phase_angle": 15.547, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.906, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 166.972, 203.450, 115.041 ], "x_axis": [ -0.589, 0.755, -0.289 ], "y_axis": [ -0.233, -0.500, -0.834 ], "z_axis": [ -0.774, -0.424, 0.470 ], "quaternion": [ 0.309, -0.332, -0.393, 0.800 ] } }, { "index": 692, "index_chain": 692, "chain_name": "A", "nt_resnum": 694, "nt_name": "G", "nt_code": "G", "nt_id": "///A/694", "linked_nts": [ "///A/693", "///A/695" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -62.671, "beta": 167.003, "gamma": 59.848, "delta": 79.847, "epsilon": -154.505, "zeta": -72.134, "epsilon_zeta": -82.371, "bb_type": "BI", "chi": -173.279, "glyco_bond": "anti", "C5prime_xyz": [ -1.818, 8.656, 1.257 ], "P_xyz": [ 0.687, 9.290, 1.633 ], "form": "A", "ssZp": 4.533, "Dp": 4.545, "splay_angle": 21.072, "splay_distance": 3.458, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 168.809, "theta": -149.316, "eta_prime": -172.798, "theta_prime": -149.277, "eta_base": -123.837, "theta_base": -130.628, "v0": -1.364, "v1": -21.668, "v2": 35.121, "v3": -36.916, "v4": 24.115, "amplitude": 37.531, "phase_angle": 20.646, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.912, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 164.168, 204.108, 117.481 ], "x_axis": [ -0.607, 0.337, -0.720 ], "y_axis": [ 0.145, -0.843, -0.517 ], "z_axis": [ -0.782, -0.418, 0.463 ], "quaternion": [ 0.056, -0.440, -0.274, 0.853 ] } }, { "index": 693, "index_chain": 693, "chain_name": "A", "nt_resnum": 695, "nt_name": "G", "nt_code": "G", "nt_id": "///A/695", "linked_nts": [ "///A/694", "///A/696" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -65.535, "beta": -174.419, "gamma": 47.371, "delta": 83.167, "epsilon": -149.197, "zeta": -74.149, "epsilon_zeta": -75.048, "bb_type": "BI", "chi": -155.375, "glyco_bond": "anti", "C5prime_xyz": [ -1.521, 8.824, 0.284 ], "P_xyz": [ 0.909, 9.478, 1.016 ], "form": ".", "ssZp": 4.173, "Dp": 4.487, "splay_angle": 18.993, "splay_distance": 3.060, "splay_ratio": 0.165, "d22": null, "d64": null, "eta": 171.844, "theta": -145.209, "eta_prime": -179.485, "theta_prime": -141.817, "eta_base": -150.460, "theta_base": -98.202, "v0": -0.623, "v1": -20.921, "v2": 33.238, "v3": -34.502, "v4": 22.157, "amplitude": 35.275, "phase_angle": 19.568, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.875, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 161.582, 204.939, 119.621 ], "x_axis": [ -0.340, -0.116, -0.933 ], "y_axis": [ 0.359, -0.933, -0.015 ], "z_axis": [ -0.869, -0.340, 0.359 ], "quaternion": [ -0.146, -0.555, -0.110, 0.811 ] } }, { "index": 694, "index_chain": 694, "chain_name": "A", "nt_resnum": 696, "nt_name": "C", "nt_code": "C", "nt_id": "///A/696", "linked_nts": [ "///A/695", "///A/697" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop", "alpha": -57.605, "beta": 162.230, "gamma": 51.316, "delta": 81.566, "epsilon": -150.305, "zeta": -79.113, "epsilon_zeta": -71.192, "bb_type": "BI", "chi": -149.169, "glyco_bond": "anti", "C5prime_xyz": [ -1.447, 8.826, -0.104 ], "P_xyz": [ 1.134, 9.196, -0.339 ], "form": "A", "ssZp": 4.053, "Dp": 4.556, "splay_angle": 23.465, "splay_distance": 3.906, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 165.274, "theta": -120.401, "eta_prime": -177.180, "theta_prime": -131.847, "eta_base": -120.361, "theta_base": -104.799, "v0": 0.170, "v1": -22.180, "v2": 34.530, "v3": -35.403, "v4": 22.237, "amplitude": 36.384, "phase_angle": 18.370, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.899, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 158.668, 204.087, 119.234 ], "x_axis": [ -0.049, -0.661, -0.748 ], "y_axis": [ 0.310, -0.722, 0.618 ], "z_axis": [ -0.949, -0.202, 0.241 ], "quaternion": [ -0.342, -0.598, 0.147, 0.709 ] } }, { "index": 695, "index_chain": 695, "chain_name": "A", "nt_resnum": 697, "nt_name": "G", "nt_code": "G", "nt_id": "///A/697", "linked_nts": [ "///A/696", "///A/698" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop", "alpha": 165.753, "beta": -162.630, "gamma": 156.351, "delta": 84.644, "epsilon": -140.290, "zeta": -82.998, "epsilon_zeta": -57.292, "bb_type": "BI", "chi": -174.520, "glyco_bond": "anti", "C5prime_xyz": [ -1.280, 8.504, 1.413 ], "P_xyz": [ 0.786, 9.730, 0.381 ], "form": "A", "ssZp": 4.553, "Dp": 4.598, "splay_angle": 18.828, "splay_distance": 2.957, "splay_ratio": 0.164, "d22": null, "d64": null, "eta": 149.029, "theta": -161.914, "eta_prime": 169.293, "theta_prime": -160.655, "eta_base": -142.488, "theta_base": -137.811, "v0": 2.321, "v1": -22.666, "v2": 33.196, "v3": -32.882, "v4": 19.298, "amplitude": 34.352, "phase_angle": 14.904, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.239, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 155.403, 202.308, 118.036 ], "x_axis": [ 0.646, -0.702, -0.299 ], "y_axis": [ 0.184, -0.236, 0.954 ], "z_axis": [ -0.741, -0.672, -0.023 ], "quaternion": [ 0.589, 0.690, -0.188, -0.377 ] } }, { "index": 696, "index_chain": 696, "chain_name": "A", "nt_resnum": 698, "nt_name": "C", "nt_code": "C", "nt_id": "///A/698", "linked_nts": [ "///A/697", "///A/699" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop", "alpha": -60.004, "beta": 168.177, "gamma": 51.241, "delta": 86.220, "epsilon": -115.141, "zeta": -96.429, "epsilon_zeta": -18.712, "bb_type": "--", "chi": -154.392, "glyco_bond": "anti", "C5prime_xyz": [ -1.309, 8.772, 0.227 ], "P_xyz": [ 1.283, 9.041, 0.488 ], "form": ".", "ssZp": 3.870, "Dp": 4.569, "splay_angle": 27.910, "splay_distance": 4.566, "splay_ratio": 0.256, "d22": null, "d64": null, "eta": 176.941, "theta": -133.939, "eta_prime": -173.004, "theta_prime": -127.765, "eta_base": -143.451, "theta_base": -67.277, "v0": 1.183, "v1": -21.372, "v2": 32.243, "v3": -32.434, "v4": 19.748, "amplitude": 33.649, "phase_angle": 16.623, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.821, "filter_rmsd": 0.061, "frame": { "rmsd": 0.006, "origin": [ 153.307, 200.841, 116.555 ], "x_axis": [ 0.658, -0.703, 0.268 ], "y_axis": [ -0.317, 0.065, 0.946 ], "z_axis": [ -0.683, -0.708, -0.180 ], "quaternion": [ 0.621, 0.666, -0.383, -0.156 ] } }, { "index": 697, "index_chain": 697, "chain_name": "A", "nt_resnum": 699, "nt_name": "A", "nt_code": "A", "nt_id": "///A/699", "linked_nts": [ "///A/698", "///A/700" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,phosphate", "alpha": -51.492, "beta": 130.567, "gamma": 61.469, "delta": 86.109, "epsilon": -118.059, "zeta": 36.963, "epsilon_zeta": 204.977, "bb_type": "--", "chi": -148.323, "glyco_bond": "anti", "C5prime_xyz": [ -0.992, 8.586, -0.176 ], "P_xyz": [ 1.276, 7.934, -1.334 ], "form": ".", "ssZp": 3.762, "Dp": 4.771, "splay_angle": 25.332, "splay_distance": 4.060, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 163.880, "theta": 0.528, "eta_prime": -172.305, "theta_prime": -50.384, "eta_base": -99.556, "theta_base": -99.369, "v0": 7.070, "v1": -26.755, "v2": 35.184, "v3": -32.090, "v4": 15.852, "amplitude": 35.482, "phase_angle": 7.428, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.851, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 152.262, 197.141, 119.017 ], "x_axis": [ 0.168, -0.396, 0.903 ], "y_axis": [ -0.875, 0.361, 0.321 ], "z_axis": [ -0.453, -0.844, -0.286 ], "quaternion": [ 0.558, 0.523, -0.608, 0.215 ] } }, { "index": 698, "index_chain": 698, "chain_name": "A", "nt_resnum": 700, "nt_name": "U", "nt_code": "U", "nt_id": "///A/700", "linked_nts": [ "///A/699", "///A/701" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": 155.774, "beta": 133.910, "gamma": 75.654, "delta": 145.427, "epsilon": -109.384, "zeta": -47.729, "epsilon_zeta": -61.654, "bb_type": "--", "chi": -143.564, "glyco_bond": "anti", "C5prime_xyz": [ -1.823, 8.711, 0.045 ], "P_xyz": [ 0.795, 8.587, 0.003 ], "form": ".", "ssZp": 1.316, "Dp": 1.268, "splay_angle": 133.585, "splay_distance": 16.527, "splay_ratio": 0.920, "d22": null, "d64": null, "eta": 46.044, "theta": -18.903, "eta_prime": 116.838, "theta_prime": -51.054, "eta_base": 120.614, "theta_base": -9.578, "v0": -21.052, "v1": 34.792, "v2": -34.444, "v3": 23.160, "v4": -1.534, "amplitude": 35.900, "phase_angle": 163.625, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.049, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 150.365, 193.995, 120.747 ], "x_axis": [ 0.209, 0.201, -0.957 ], "y_axis": [ -0.901, 0.419, -0.109 ], "z_axis": [ 0.380, 0.885, 0.269 ], "quaternion": [ 0.689, -0.361, 0.485, 0.400 ] } }, { "index": 699, "index_chain": 699, "chain_name": "A", "nt_resnum": 701, "nt_name": "G", "nt_code": "G", "nt_id": "///A/701", "linked_nts": [ "///A/700", "///A/702" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,junction-loop,splayed-apart", "alpha": -116.352, "beta": -131.171, "gamma": 76.833, "delta": 82.623, "epsilon": -126.099, "zeta": -161.355, "epsilon_zeta": 35.256, "bb_type": "--", "chi": -178.759, "glyco_bond": "anti", "C5prime_xyz": [ -1.059, 8.247, 1.600 ], "P_xyz": [ 1.370, 7.509, 2.273 ], "form": ".", "ssZp": 4.815, "Dp": 4.832, "splay_angle": 71.508, "splay_distance": 10.236, "splay_ratio": 0.586, "d22": null, "d64": null, "eta": 159.586, "theta": 154.538, "eta_prime": -161.973, "theta_prime": 178.137, "eta_base": -159.284, "theta_base": 165.777, "v0": 9.887, "v1": -30.764, "v2": 38.942, "v3": -34.256, "v4": 15.410, "amplitude": 39.052, "phase_angle": 4.302, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 136.098, 201.503, 124.387 ], "x_axis": [ -0.103, -0.740, -0.664 ], "y_axis": [ 0.960, -0.250, 0.130 ], "z_axis": [ -0.262, -0.624, 0.736 ], "quaternion": [ 0.588, 0.320, 0.171, -0.723 ] } }, { "index": 700, "index_chain": 700, "chain_name": "A", "nt_resnum": 702, "nt_name": "A", "nt_code": "A", "nt_id": "///A/702", "linked_nts": [ "///A/701", "///A/703" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,junction-loop", "alpha": -39.669, "beta": 157.850, "gamma": 57.928, "delta": 149.851, "epsilon": -82.767, "zeta": 142.821, "epsilon_zeta": 134.412, "bb_type": "BII", "chi": -102.994, "glyco_bond": "anti", "C5prime_xyz": [ -2.631, 8.105, -1.940 ], "P_xyz": [ -0.144, 8.866, -2.261 ], "form": ".", "ssZp": 0.542, "Dp": 0.530, "splay_angle": 48.131, "splay_distance": 7.620, "splay_ratio": 0.411, "d22": null, "d64": null, "eta": -125.113, "theta": 174.824, "eta_prime": -130.706, "theta_prime": 158.986, "eta_base": 178.806, "theta_base": -138.025, "v0": -24.753, "v1": 39.439, "v2": -38.121, "v3": 24.840, "v4": -0.284, "amplitude": 40.179, "phase_angle": 161.582, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "3b", "suiteness": 0.177, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 135.907, 205.731, 133.706 ], "x_axis": [ -0.664, -0.143, -0.734 ], "y_axis": [ 0.418, -0.885, -0.207 ], "z_axis": [ -0.619, -0.444, 0.647 ], "quaternion": [ -0.157, -0.378, -0.182, 0.894 ] } }, { "index": 701, "index_chain": 701, "chain_name": "A", "nt_resnum": 703, "nt_name": "G", "nt_code": "G", "nt_id": "///A/703", "linked_nts": [ "///A/702", "///A/704" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop", "alpha": -66.112, "beta": 124.848, "gamma": 48.059, "delta": 81.369, "epsilon": -144.224, "zeta": -78.173, "epsilon_zeta": -66.052, "bb_type": "BI", "chi": -169.167, "glyco_bond": "anti", "C5prime_xyz": [ -1.479, 8.768, 1.059 ], "P_xyz": [ 1.128, 8.573, 1.045 ], "form": "A", "ssZp": 4.445, "Dp": 4.525, "splay_angle": 22.004, "splay_distance": 3.542, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": -173.471, "theta": -134.660, "eta_prime": -166.370, "theta_prime": -139.112, "eta_base": -101.749, "theta_base": -115.926, "v0": -2.247, "v1": -19.778, "v2": 32.981, "v3": -35.189, "v4": 23.640, "amplitude": 35.607, "phase_angle": 22.139, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4a", "suiteness": 0.154, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 135.406, 202.481, 140.580 ], "x_axis": [ -0.233, -0.971, -0.046 ], "y_axis": [ 0.843, -0.178, -0.508 ], "z_axis": [ 0.486, -0.157, 0.860 ], "quaternion": [ 0.602, -0.146, 0.221, -0.753 ] } }, { "index": 702, "index_chain": 702, "chain_name": "A", "nt_resnum": 704, "nt_name": "U", "nt_code": "U", "nt_id": "///A/704", "linked_nts": [ "///A/703", "///A/705" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -55.255, "beta": 161.174, "gamma": 55.640, "delta": 83.956, "epsilon": -159.460, "zeta": -71.629, "epsilon_zeta": -87.831, "bb_type": "BI", "chi": -165.680, "glyco_bond": "anti", "C5prime_xyz": [ -1.715, 8.787, 0.811 ], "P_xyz": [ 0.794, 9.285, 1.329 ], "form": "A", "ssZp": 4.098, "Dp": 4.243, "splay_angle": 17.070, "splay_distance": 2.770, "splay_ratio": 0.149, "d22": null, "d64": null, "eta": 170.152, "theta": -147.869, "eta_prime": -171.220, "theta_prime": -150.530, "eta_base": -126.888, "theta_base": -134.558, "v0": -5.026, "v1": -16.351, "v2": 30.170, "v3": -33.952, "v4": 24.601, "amplitude": 33.848, "phase_angle": 26.959, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.844, "filter_rmsd": 0.106, "frame": { "rmsd": 0.010, "origin": [ 135.755, 201.447, 143.949 ], "x_axis": [ 0.219, -0.890, -0.400 ], "y_axis": [ 0.830, 0.385, -0.402 ], "z_axis": [ 0.512, -0.244, 0.823 ], "quaternion": [ 0.779, -0.051, 0.293, -0.552 ] } }, { "index": 703, "index_chain": 703, "chain_name": "A", "nt_resnum": 705, "nt_name": "A", "nt_code": "A", "nt_id": "///A/705", "linked_nts": [ "///A/704", "///A/706" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -71.393, "beta": -173.381, "gamma": 40.973, "delta": 85.097, "epsilon": -171.462, "zeta": -79.710, "epsilon_zeta": -91.752, "bb_type": "BI", "chi": -147.556, "glyco_bond": "anti", "C5prime_xyz": [ -1.256, 8.747, -0.163 ], "P_xyz": [ 1.196, 9.334, 0.548 ], "form": "A", "ssZp": 3.911, "Dp": 4.271, "splay_angle": 20.665, "splay_distance": 3.480, "splay_ratio": 0.181, "d22": null, "d64": null, "eta": 161.303, "theta": -134.854, "eta_prime": 172.026, "theta_prime": -142.364, "eta_base": -158.458, "theta_base": -121.024, "v0": -0.550, "v1": -19.563, "v2": 31.109, "v3": -32.317, "v4": 20.757, "amplitude": 33.019, "phase_angle": 19.583, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.650, "filter_rmsd": 0.043, "frame": { "rmsd": 0.011, "origin": [ 135.678, 200.665, 146.605 ], "x_axis": [ 0.573, -0.500, -0.650 ], "y_axis": [ 0.654, 0.756, -0.005 ], "z_axis": [ 0.494, -0.422, 0.760 ], "quaternion": [ 0.879, 0.119, 0.325, -0.328 ] } }, { "index": 704, "index_chain": 704, "chain_name": "A", "nt_resnum": 706, "nt_name": "C", "nt_code": "C", "nt_id": "///A/706", "linked_nts": [ "///A/705", "///A/707" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 155.857, "beta": -153.615, "gamma": 165.225, "delta": 81.546, "epsilon": -133.242, "zeta": -88.973, "epsilon_zeta": -44.270, "bb_type": "BI", "chi": -169.795, "glyco_bond": "anti", "C5prime_xyz": [ -1.241, 8.610, 1.132 ], "P_xyz": [ 0.628, 9.833, -0.193 ], "form": "A", "ssZp": 4.566, "Dp": 4.690, "splay_angle": 26.945, "splay_distance": 4.207, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 158.560, "theta": -162.714, "eta_prime": 174.026, "theta_prime": -161.466, "eta_base": -147.519, "theta_base": -135.052, "v0": 2.959, "v1": -24.774, "v2": 36.055, "v3": -35.363, "v4": 20.440, "amplitude": 37.191, "phase_angle": 14.196, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.599, "filter_rmsd": 0.065, "frame": { "rmsd": 0.007, "origin": [ 136.796, 198.091, 148.663 ], "x_axis": [ 0.764, -0.074, -0.641 ], "y_axis": [ 0.380, 0.854, 0.354 ], "z_axis": [ 0.521, -0.514, 0.681 ], "quaternion": [ 0.908, 0.239, 0.320, -0.125 ] } }, { "index": 705, "index_chain": 705, "chain_name": "A", "nt_resnum": 707, "nt_name": "G", "nt_code": "G", "nt_id": "///A/707", "linked_nts": [ "///A/706", "///A/708" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -42.007, "beta": 166.472, "gamma": 33.067, "delta": 81.361, "epsilon": -144.944, "zeta": -81.766, "epsilon_zeta": -63.178, "bb_type": "BI", "chi": -174.309, "glyco_bond": "anti", "C5prime_xyz": [ -1.355, 8.548, 1.379 ], "P_xyz": [ 1.017, 8.729, 2.449 ], "form": "A", "ssZp": 4.598, "Dp": 4.631, "splay_angle": 24.673, "splay_distance": 3.966, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 167.282, "theta": -150.916, "eta_prime": 177.363, "theta_prime": -147.710, "eta_base": -145.248, "theta_base": -135.521, "v0": 2.060, "v1": -24.061, "v2": 35.730, "v3": -35.538, "v4": 21.113, "amplitude": 37.082, "phase_angle": 15.516, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.202, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 138.882, 194.913, 150.465 ], "x_axis": [ 0.569, 0.568, -0.595 ], "y_axis": [ -0.209, 0.799, 0.563 ], "z_axis": [ 0.795, -0.196, 0.574 ], "quaternion": [ 0.858, 0.221, 0.405, 0.227 ] } }, { "index": 706, "index_chain": 706, "chain_name": "A", "nt_resnum": 708, "nt_name": "U", "nt_code": "U", "nt_id": "///A/708", "linked_nts": [ "///A/707", "///A/709" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -53.354, "beta": 169.805, "gamma": 47.526, "delta": 79.528, "epsilon": -151.872, "zeta": -62.693, "epsilon_zeta": -89.178, "bb_type": "BI", "chi": -166.926, "glyco_bond": "anti", "C5prime_xyz": [ -1.623, 8.716, 0.904 ], "P_xyz": [ 0.853, 9.354, 1.421 ], "form": "A", "ssZp": 4.512, "Dp": 4.579, "splay_angle": 23.439, "splay_distance": 3.747, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 170.524, "theta": -140.283, "eta_prime": -179.409, "theta_prime": -138.711, "eta_base": -156.898, "theta_base": -95.893, "v0": -0.618, "v1": -22.622, "v2": 35.916, "v3": -37.214, "v4": 23.860, "amplitude": 38.093, "phase_angle": 19.466, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.801, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 141.445, 191.984, 151.225 ], "x_axis": [ 0.407, 0.840, -0.359 ], "y_axis": [ -0.397, 0.517, 0.759 ], "z_axis": [ 0.823, -0.166, 0.544 ], "quaternion": [ 0.785, 0.294, 0.376, 0.394 ] } }, { "index": 707, "index_chain": 707, "chain_name": "A", "nt_resnum": 709, "nt_name": "G", "nt_code": "G", "nt_id": "///A/709", "linked_nts": [ "///A/708", "///A/710" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -70.009, "beta": 168.296, "gamma": 61.789, "delta": 79.638, "epsilon": -155.597, "zeta": -71.345, "epsilon_zeta": -84.251, "bb_type": "BI", "chi": -170.241, "glyco_bond": "anti", "C5prime_xyz": [ -1.521, 8.728, 1.088 ], "P_xyz": [ 1.030, 9.272, 1.295 ], "form": "A", "ssZp": 4.536, "Dp": 4.552, "splay_angle": 27.386, "splay_distance": 4.377, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 165.105, "theta": -150.629, "eta_prime": -174.611, "theta_prime": -150.979, "eta_base": -111.811, "theta_base": -133.807, "v0": -0.678, "v1": -22.287, "v2": 35.494, "v3": -36.829, "v4": 23.696, "amplitude": 37.679, "phase_angle": 19.608, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.834, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 145.071, 192.906, 151.435 ], "x_axis": [ 0.004, 0.974, 0.228 ], "y_axis": [ -0.540, -0.190, 0.820 ], "z_axis": [ 0.842, -0.126, 0.525 ], "quaternion": [ 0.578, 0.409, 0.265, 0.654 ] } }, { "index": 708, "index_chain": 708, "chain_name": "A", "nt_resnum": 710, "nt_name": "G", "nt_code": "G", "nt_id": "///A/710", "linked_nts": [ "///A/709", "///A/711" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -63.134, "beta": -170.982, "gamma": 40.912, "delta": 81.356, "epsilon": -161.889, "zeta": -77.418, "epsilon_zeta": -84.472, "bb_type": "BI", "chi": -171.608, "glyco_bond": "anti", "C5prime_xyz": [ -1.621, 8.644, 1.210 ], "P_xyz": [ 0.559, 9.123, 2.569 ], "form": "A", "ssZp": 4.432, "Dp": 4.462, "splay_angle": 24.445, "splay_distance": 4.013, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 169.437, "theta": -133.263, "eta_prime": 177.515, "theta_prime": -137.196, "eta_base": -153.395, "theta_base": -105.282, "v0": -0.377, "v1": -21.691, "v2": 34.285, "v3": -35.485, "v4": 22.626, "amplitude": 36.310, "phase_angle": 19.225, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.669, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 149.445, 192.806, 151.568 ], "x_axis": [ -0.509, 0.786, 0.351 ], "y_axis": [ -0.597, -0.616, 0.514 ], "z_axis": [ 0.620, 0.052, 0.783 ], "quaternion": [ 0.405, 0.285, 0.166, 0.853 ] } }, { "index": 709, "index_chain": 709, "chain_name": "A", "nt_resnum": 711, "nt_name": "U", "nt_code": "U", "nt_id": "///A/711", "linked_nts": [ "///A/710", "///A/712" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 166.409, "beta": -159.821, "gamma": 162.656, "delta": 83.271, "epsilon": -131.834, "zeta": -81.687, "epsilon_zeta": -50.146, "bb_type": "BI", "chi": 172.521, "glyco_bond": "anti", "C5prime_xyz": [ -1.388, 8.115, 2.104 ], "P_xyz": [ 0.700, 9.549, 1.490 ], "form": "A", "ssZp": 4.671, "Dp": 4.705, "splay_angle": 25.015, "splay_distance": 3.873, "splay_ratio": 0.220, "d22": 4.713, "d64": 4.676, "eta": 162.132, "theta": -157.651, "eta_prime": 178.539, "theta_prime": -155.765, "eta_base": -131.173, "theta_base": -129.848, "v0": 4.473, "v1": -25.641, "v2": 35.902, "v3": -34.339, "v4": 18.850, "amplitude": 36.676, "phase_angle": 11.796, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.497, "filter_rmsd": 0.106, "frame": { "rmsd": 0.009, "origin": [ 151.951, 195.077, 153.728 ], "x_axis": [ -0.785, 0.267, 0.560 ], "y_axis": [ -0.204, -0.963, 0.173 ], "z_axis": [ 0.585, 0.022, 0.810 ], "quaternion": [ 0.125, 0.303, 0.052, 0.943 ] } }, { "index": 710, "index_chain": 710, "chain_name": "A", "nt_resnum": 712, "nt_name": "C", "nt_code": "C", "nt_id": "///A/712", "linked_nts": [ "///A/711", "///A/713" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack", "alpha": -58.994, "beta": 172.984, "gamma": 46.475, "delta": 81.117, "epsilon": -157.650, "zeta": -69.227, "epsilon_zeta": -88.423, "bb_type": "BI", "chi": -174.034, "glyco_bond": "anti", "C5prime_xyz": [ -1.284, 8.590, 1.342 ], "P_xyz": [ 1.183, 8.807, 2.184 ], "form": "A", "ssZp": 4.529, "Dp": 4.552, "splay_angle": 22.540, "splay_distance": 3.613, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 163.993, "theta": -149.038, "eta_prime": 178.029, "theta_prime": -146.863, "eta_base": -141.736, "theta_base": -130.844, "v0": 1.879, "v1": -24.150, "v2": 36.003, "v3": -35.853, "v4": 21.429, "amplitude": 37.408, "phase_angle": 15.751, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.755, "filter_rmsd": 0.063, "frame": { "rmsd": 0.008, "origin": [ 153.993, 197.263, 156.187 ], "x_axis": [ -0.820, -0.354, 0.450 ], "y_axis": [ 0.266, -0.931, -0.249 ], "z_axis": [ 0.507, -0.084, 0.858 ], "quaternion": [ -0.163, 0.252, -0.088, 0.950 ] } }, { "index": 711, "index_chain": 711, "chain_name": "A", "nt_resnum": 713, "nt_name": "G", "nt_code": "G", "nt_id": "///A/713", "linked_nts": [ "///A/712", "///A/714" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -67.264, "beta": -174.482, "gamma": 51.578, "delta": 84.653, "epsilon": -155.341, "zeta": -73.099, "epsilon_zeta": -82.242, "bb_type": "BI", "chi": -166.018, "glyco_bond": "anti", "C5prime_xyz": [ -1.433, 8.773, 0.899 ], "P_xyz": [ 0.927, 9.162, 1.980 ], "form": "A", "ssZp": 4.234, "Dp": 4.358, "splay_angle": 21.211, "splay_distance": 3.390, "splay_ratio": 0.184, "d22": null, "d64": null, "eta": 173.784, "theta": -148.676, "eta_prime": -175.692, "theta_prime": -145.615, "eta_base": -149.543, "theta_base": -125.553, "v0": -2.461, "v1": -18.274, "v2": 30.840, "v3": -33.156, "v4": 22.472, "amplitude": 33.444, "phase_angle": 22.757, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.880, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 154.977, 199.233, 159.052 ], "x_axis": [ -0.672, -0.732, 0.115 ], "y_axis": [ 0.627, -0.644, -0.439 ], "z_axis": [ 0.395, -0.223, 0.891 ], "quaternion": [ -0.379, 0.142, -0.185, 0.895 ] } }, { "index": 712, "index_chain": 712, "chain_name": "A", "nt_resnum": 714, "nt_name": "U", "nt_code": "U", "nt_id": "///A/714", "linked_nts": [ "///A/713", "///A/715" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -68.998, "beta": -171.525, "gamma": 43.504, "delta": 85.951, "epsilon": -165.340, "zeta": -79.254, "epsilon_zeta": -86.086, "bb_type": "BI", "chi": -148.487, "glyco_bond": "anti", "C5prime_xyz": [ -1.169, 8.700, -0.103 ], "P_xyz": [ 1.313, 9.162, 0.598 ], "form": "A", "ssZp": 3.971, "Dp": 4.371, "splay_angle": 22.413, "splay_distance": 3.764, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 166.579, "theta": -127.186, "eta_prime": 177.152, "theta_prime": -133.608, "eta_base": -153.619, "theta_base": -108.993, "v0": 2.163, "v1": -21.720, "v2": 31.937, "v3": -31.595, "v4": 18.611, "amplitude": 33.062, "phase_angle": 14.992, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.731, "filter_rmsd": 0.103, "frame": { "rmsd": 0.007, "origin": [ 155.541, 199.696, 162.363 ], "x_axis": [ -0.292, -0.921, -0.257 ], "y_axis": [ 0.914, -0.189, -0.360 ], "z_axis": [ 0.283, -0.340, 0.897 ], "quaternion": [ 0.595, -0.008, 0.227, -0.771 ] } }, { "index": 713, "index_chain": 713, "chain_name": "A", "nt_resnum": 715, "nt_name": "A", "nt_code": "A", "nt_id": "///A/715", "linked_nts": [ "///A/714", "///A/716" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 152.737, "beta": -148.480, "gamma": 168.327, "delta": 81.721, "epsilon": -136.347, "zeta": 29.468, "epsilon_zeta": 194.185, "bb_type": "--", "chi": -170.963, "glyco_bond": "anti", "C5prime_xyz": [ -1.412, 8.547, 1.143 ], "P_xyz": [ 0.303, 9.849, -0.342 ], "form": ".", "ssZp": 4.636, "Dp": 4.709, "splay_angle": 54.323, "splay_distance": 7.232, "splay_ratio": 0.476, "d22": null, "d64": null, "eta": 159.260, "theta": -20.866, "eta_prime": 179.455, "theta_prime": -98.417, "eta_base": -136.419, "theta_base": -168.519, "v0": 2.652, "v1": -24.477, "v2": 35.781, "v3": -35.256, "v4": 20.578, "amplitude": 36.976, "phase_angle": 14.610, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.669, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 155.231, 197.515, 165.415 ], "x_axis": [ 0.167, -0.888, -0.428 ], "y_axis": [ 0.966, 0.235, -0.110 ], "z_axis": [ 0.198, -0.395, 0.897 ], "quaternion": [ 0.758, 0.094, 0.206, -0.611 ] } }, { "index": 714, "index_chain": 714, "chain_name": "A", "nt_resnum": 716, "nt_name": "G", "nt_code": "G", "nt_id": "///A/716", "linked_nts": [ "///A/715", "///A/717" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,non-pair-contact,junction-loop,cap-donor,cap-acceptor,phosphate", "alpha": 114.511, "beta": 88.848, "gamma": 67.069, "delta": 86.074, "epsilon": -106.509, "zeta": -67.376, "epsilon_zeta": -39.133, "bb_type": "--", "chi": 99.982, "glyco_bond": "--", "C5prime_xyz": [ -3.997, 5.670, 3.203 ], "P_xyz": [ -1.632, 4.826, 3.971 ], "form": ".", "ssZp": 1.349, "Dp": 4.394, "splay_angle": 24.806, "splay_distance": 3.480, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": -47.468, "theta": -69.525, "eta_prime": 40.953, "theta_prime": -76.356, "eta_base": 72.861, "theta_base": -83.813, "v0": -3.269, "v1": -17.365, "v2": 30.004, "v3": -32.739, "v4": 22.764, "amplitude": 32.882, "phase_angle": 24.152, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.017, "frame": { "rmsd": 0.017, "origin": [ 156.582, 197.808, 172.513 ], "x_axis": [ -0.323, 0.739, 0.592 ], "y_axis": [ 0.936, 0.157, 0.315 ], "z_axis": [ 0.140, 0.655, -0.742 ], "quaternion": [ -0.151, 0.562, 0.745, 0.326 ] } }, { "index": 715, "index_chain": 715, "chain_name": "A", "nt_resnum": 717, "nt_name": "A", "nt_code": "A", "nt_id": "///A/717", "linked_nts": [ "///A/716", "///A/718" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart", "alpha": -103.034, "beta": -123.193, "gamma": 68.402, "delta": 137.975, "epsilon": 48.876, "zeta": -80.566, "epsilon_zeta": -230.558, "bb_type": "--", "chi": -78.049, "glyco_bond": "--", "C5prime_xyz": [ -2.109, 7.012, -2.919 ], "P_xyz": [ 0.428, 7.600, -2.599 ], "form": ".", "ssZp": 0.332, "Dp": 0.454, "splay_angle": 130.595, "splay_distance": 18.189, "splay_ratio": 0.909, "d22": null, "d64": null, "eta": 143.289, "theta": 160.026, "eta_prime": -143.243, "theta_prime": 78.317, "eta_base": -119.425, "theta_base": 83.518, "v0": -8.858, "v1": 21.100, "v2": -24.706, "v3": 20.247, "v4": -7.351, "amplitude": 24.718, "phase_angle": 178.223, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.018, "filter_rmsd": 0.042, "frame": { "rmsd": 0.012, "origin": [ 155.916, 198.337, 169.139 ], "x_axis": [ 0.565, 0.819, 0.103 ], "y_axis": [ 0.782, -0.492, -0.383 ], "z_axis": [ -0.263, 0.297, -0.918 ], "quaternion": [ -0.197, 0.862, 0.464, -0.046 ] } }, { "index": 716, "index_chain": 716, "chain_name": "A", "nt_resnum": 718, "nt_name": "C", "nt_code": "C", "nt_id": "///A/718", "linked_nts": [ "///A/717", "///A/719" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop,A-minor,cap-donor,phosphate,splayed-apart", "alpha": -153.817, "beta": -155.157, "gamma": -19.718, "delta": 145.214, "epsilon": -168.365, "zeta": -109.547, "epsilon_zeta": -58.818, "bb_type": "BI", "chi": -133.919, "glyco_bond": "anti", "C5prime_xyz": [ -1.427, 8.666, -0.462 ], "P_xyz": [ -0.501, 10.832, 0.657 ], "form": ".", "ssZp": 2.574, "Dp": 2.349, "splay_angle": 24.247, "splay_distance": 4.177, "splay_ratio": 0.214, "d22": 4.712, "d64": 4.490, "eta": 7.503, "theta": -140.639, "eta_prime": -0.535, "theta_prime": -154.926, "eta_base": -5.207, "theta_base": -120.514, "v0": -19.372, "v1": 32.866, "v2": -32.975, "v3": 22.496, "v4": -2.085, "amplitude": 34.178, "phase_angle": 164.756, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.011, "origin": [ 159.601, 180.543, 169.918 ], "x_axis": [ 0.584, -0.325, -0.744 ], "y_axis": [ -0.119, 0.872, -0.475 ], "z_axis": [ 0.803, 0.366, 0.471 ], "quaternion": [ 0.855, -0.246, 0.452, -0.060 ] } }, { "index": 717, "index_chain": 717, "chain_name": "A", "nt_resnum": 719, "nt_name": "C", "nt_code": "C", "nt_id": "///A/719", "linked_nts": [ "///A/718", "///A/720" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,multiplet,internal-loop,A-minor,phosphate", "alpha": 152.626, "beta": -178.979, "gamma": 163.616, "delta": 84.483, "epsilon": -127.019, "zeta": -91.058, "epsilon_zeta": -35.961, "bb_type": "--", "chi": -171.528, "glyco_bond": "anti", "C5prime_xyz": [ -1.051, 8.600, 1.261 ], "P_xyz": [ 0.838, 10.126, 0.318 ], "form": "A", "ssZp": 4.382, "Dp": 4.554, "splay_angle": 16.834, "splay_distance": 2.726, "splay_ratio": 0.146, "d22": 4.456, "d64": 3.904, "eta": 144.178, "theta": -166.616, "eta_prime": 155.079, "theta_prime": -161.294, "eta_base": -157.997, "theta_base": -142.871, "v0": 1.140, "v1": -21.568, "v2": 32.717, "v3": -32.988, "v4": 20.099, "amplitude": 34.174, "phase_angle": 16.788, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.075, "frame": { "rmsd": 0.017, "origin": [ 162.828, 180.878, 172.549 ], "x_axis": [ 0.275, 0.142, -0.951 ], "y_axis": [ -0.550, 0.835, -0.035 ], "z_axis": [ 0.789, 0.532, 0.307 ], "quaternion": [ 0.777, -0.182, 0.560, 0.222 ] } }, { "index": 718, "index_chain": 718, "chain_name": "A", "nt_resnum": 720, "nt_name": "C", "nt_code": "C", "nt_id": "///A/720", "linked_nts": [ "///A/719", "///A/721" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -41.933, "beta": 160.903, "gamma": 27.750, "delta": 80.967, "epsilon": -142.559, "zeta": -81.517, "epsilon_zeta": -61.042, "bb_type": "BI", "chi": -146.888, "glyco_bond": "anti", "C5prime_xyz": [ -1.367, 8.775, -0.257 ], "P_xyz": [ 1.177, 9.281, 0.011 ], "form": ".", "ssZp": 3.906, "Dp": 4.633, "splay_angle": 27.521, "splay_distance": 4.495, "splay_ratio": 0.238, "d22": null, "d64": null, "eta": 158.124, "theta": -146.874, "eta_prime": 170.653, "theta_prime": -142.230, "eta_base": -162.282, "theta_base": -119.540, "v0": 1.116, "v1": -23.527, "v2": 35.753, "v3": -36.108, "v4": 22.062, "amplitude": 37.376, "phase_angle": 16.946, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.061, "filter_rmsd": 0.062, "frame": { "rmsd": 0.010, "origin": [ 165.346, 181.179, 173.550 ], "x_axis": [ -0.120, 0.463, -0.878 ], "y_axis": [ -0.424, 0.776, 0.467 ], "z_axis": [ 0.897, 0.429, 0.103 ], "quaternion": [ 0.663, 0.014, 0.669, 0.335 ] } }, { "index": 719, "index_chain": 719, "chain_name": "A", "nt_resnum": 721, "nt_name": "G", "nt_code": "G", "nt_id": "///A/721", "linked_nts": [ "///A/720", "///A/722" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,non-stack,isolated-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -48.726, "beta": 159.674, "gamma": 57.838, "delta": 77.652, "epsilon": -123.884, "zeta": -94.676, "epsilon_zeta": -29.208, "bb_type": "--", "chi": -147.506, "glyco_bond": "anti", "C5prime_xyz": [ -1.695, 8.878, -0.282 ], "P_xyz": [ 0.731, 9.462, -1.009 ], "form": ".", "ssZp": 3.717, "Dp": 4.698, "splay_angle": 66.769, "splay_distance": 11.308, "splay_ratio": 0.553, "d22": null, "d64": null, "eta": -178.507, "theta": -155.654, "eta_prime": -166.584, "theta_prime": -152.385, "eta_base": -137.696, "theta_base": -146.258, "v0": -2.139, "v1": -22.030, "v2": 36.460, "v3": -38.705, "v4": 25.776, "amplitude": 39.233, "phase_angle": 21.671, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.686, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 169.220, 183.158, 172.422 ], "x_axis": [ -0.337, 0.742, -0.579 ], "y_axis": [ -0.256, 0.520, 0.815 ], "z_axis": [ 0.906, 0.423, 0.015 ], "quaternion": [ 0.547, 0.179, 0.679, 0.456 ] } }, { "index": 720, "index_chain": 720, "chain_name": "A", "nt_resnum": 722, "nt_name": "A", "nt_code": "A", "nt_id": "///A/722", "linked_nts": [ "///A/721", "///A/723" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,ribose-zipper", "alpha": -141.183, "beta": 145.729, "gamma": 170.753, "delta": 83.786, "epsilon": -148.579, "zeta": -70.130, "epsilon_zeta": -78.450, "bb_type": "BI", "chi": -159.446, "glyco_bond": "anti", "C5prime_xyz": [ -1.459, 8.741, 0.515 ], "P_xyz": [ -0.900, 10.795, -1.001 ], "form": ".", "ssZp": 4.261, "Dp": 4.486, "splay_angle": 21.332, "splay_distance": 3.366, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": -148.801, "theta": 175.116, "eta_prime": -160.485, "theta_prime": -172.296, "eta_base": -162.261, "theta_base": -119.285, "v0": -0.594, "v1": -20.415, "v2": 32.421, "v3": -33.702, "v4": 21.659, "amplitude": 34.416, "phase_angle": 19.605, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 179.221, 188.332, 173.470 ], "x_axis": [ -0.429, 0.720, -0.545 ], "y_axis": [ -0.742, 0.063, 0.667 ], "z_axis": [ 0.515, 0.691, 0.507 ], "quaternion": [ 0.534, -0.011, 0.496, 0.684 ] } }, { "index": 721, "index_chain": 721, "chain_name": "A", "nt_resnum": 723, "nt_name": "A", "nt_code": "A", "nt_id": "///A/723", "linked_nts": [ "///A/722", "///A/724" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,ribose-zipper,phosphate", "alpha": -65.550, "beta": 168.389, "gamma": 53.162, "delta": 82.014, "epsilon": -149.689, "zeta": -61.580, "epsilon_zeta": -88.109, "bb_type": "BI", "chi": -148.195, "glyco_bond": "anti", "C5prime_xyz": [ -1.152, 8.664, -0.176 ], "P_xyz": [ 1.435, 8.868, -0.500 ], "form": ".", "ssZp": 4.050, "Dp": 4.643, "splay_angle": 43.552, "splay_distance": 7.036, "splay_ratio": 0.372, "d22": null, "d64": null, "eta": 163.013, "theta": -98.483, "eta_prime": -178.659, "theta_prime": -102.259, "eta_base": -116.591, "theta_base": -72.561, "v0": 4.318, "v1": -25.808, "v2": 36.325, "v3": -34.840, "v4": 19.253, "amplitude": 37.150, "phase_angle": 12.100, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.974, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 179.977, 191.556, 174.069 ], "x_axis": [ -0.790, 0.608, 0.084 ], "y_axis": [ -0.135, -0.306, 0.942 ], "z_axis": [ 0.599, 0.733, 0.324 ], "quaternion": [ 0.239, 0.220, 0.538, 0.778 ] } }, { "index": 722, "index_chain": 722, "chain_name": "A", "nt_resnum": 724, "nt_name": "A", "nt_code": "A", "nt_id": "///A/724", "linked_nts": [ "///A/723", "///A/725" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 154.617, "beta": -147.595, "gamma": 172.448, "delta": 81.925, "epsilon": -124.535, "zeta": -78.560, "epsilon_zeta": -45.976, "bb_type": "--", "chi": 165.836, "glyco_bond": "anti", "C5prime_xyz": [ -1.731, 7.965, 2.371 ], "P_xyz": [ 0.259, 9.585, 1.889 ], "form": "A", "ssZp": 4.622, "Dp": 4.706, "splay_angle": 26.595, "splay_distance": 4.273, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": 164.639, "theta": -150.842, "eta_prime": -163.009, "theta_prime": -147.631, "eta_base": -101.151, "theta_base": -118.061, "v0": 2.478, "v1": -24.183, "v2": 35.546, "v3": -35.095, "v4": 20.576, "amplitude": 36.774, "phase_angle": 14.852, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.744, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 177.200, 196.909, 177.695 ], "x_axis": [ -0.750, -0.268, 0.605 ], "y_axis": [ 0.557, -0.749, 0.359 ], "z_axis": [ 0.357, 0.607, 0.710 ], "quaternion": [ -0.230, 0.269, 0.270, 0.896 ] } }, { "index": 723, "index_chain": 723, "chain_name": "A", "nt_resnum": 725, "nt_name": "C", "nt_code": "C", "nt_id": "///A/725", "linked_nts": [ "///A/724", "///A/726" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,ribose-zipper", "alpha": -56.822, "beta": 175.754, "gamma": 47.921, "delta": 81.774, "epsilon": -153.948, "zeta": -76.073, "epsilon_zeta": -77.875, "bb_type": "BI", "chi": -165.716, "glyco_bond": "anti", "C5prime_xyz": [ -1.544, 8.794, 0.826 ], "P_xyz": [ 0.870, 9.354, 1.640 ], "form": "A", "ssZp": 4.339, "Dp": 4.453, "splay_angle": 23.843, "splay_distance": 3.769, "splay_ratio": 0.207, "d22": 4.514, "d64": 4.422, "eta": 167.653, "theta": -152.289, "eta_prime": -175.796, "theta_prime": -149.992, "eta_base": -132.771, "theta_base": -121.184, "v0": -2.250, "v1": -19.977, "v2": 33.280, "v3": -35.517, "v4": 23.826, "amplitude": 35.922, "phase_angle": 22.112, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.639, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 176.268, 200.313, 180.104 ], "x_axis": [ -0.234, -0.722, 0.652 ], "y_axis": [ 0.894, -0.423, -0.148 ], "z_axis": [ 0.383, 0.548, 0.744 ], "quaternion": [ 0.521, -0.334, -0.129, -0.775 ] } }, { "index": 724, "index_chain": 724, "chain_name": "A", "nt_resnum": 726, "nt_name": "C", "nt_code": "C", "nt_id": "///A/726", "linked_nts": [ "///A/725", "///A/727" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,ribose-zipper", "alpha": -61.886, "beta": 173.072, "gamma": 51.023, "delta": 82.222, "epsilon": -154.464, "zeta": -75.960, "epsilon_zeta": -78.504, "bb_type": "BI", "chi": -163.249, "glyco_bond": "anti", "C5prime_xyz": [ -1.234, 8.731, 0.723 ], "P_xyz": [ 1.324, 9.029, 1.176 ], "form": "A", "ssZp": 4.414, "Dp": 4.544, "splay_angle": 25.771, "splay_distance": 4.029, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 169.147, "theta": -151.258, "eta_prime": -178.781, "theta_prime": -150.795, "eta_base": -138.427, "theta_base": -130.691, "v0": 1.624, "v1": -23.328, "v2": 34.943, "v3": -34.982, "v4": 21.049, "amplitude": 36.373, "phase_angle": 16.118, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.955, "filter_rmsd": 0.065, "frame": { "rmsd": 0.008, "origin": [ 176.420, 202.636, 183.068 ], "x_axis": [ 0.277, -0.862, 0.425 ], "y_axis": [ 0.861, 0.026, -0.508 ], "z_axis": [ 0.426, 0.507, 0.749 ], "quaternion": [ 0.716, -0.354, 0.000, -0.601 ] } }, { "index": 725, "index_chain": 725, "chain_name": "A", "nt_resnum": 727, "nt_name": "A", "nt_code": "A", "nt_id": "///A/727", "linked_nts": [ "///A/726", "///A/728" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -62.900, "beta": 170.647, "gamma": 54.523, "delta": 82.863, "epsilon": -143.352, "zeta": -74.605, "epsilon_zeta": -68.747, "bb_type": "BI", "chi": -175.481, "glyco_bond": "anti", "C5prime_xyz": [ -1.562, 8.499, 1.418 ], "P_xyz": [ 0.930, 8.812, 2.134 ], "form": "A", "ssZp": 4.540, "Dp": 4.581, "splay_angle": 22.726, "splay_distance": 3.605, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 171.771, "theta": -140.958, "eta_prime": -177.460, "theta_prime": -139.990, "eta_base": -144.881, "theta_base": -110.260, "v0": 0.471, "v1": -22.042, "v2": 33.981, "v3": -34.693, "v4": 21.590, "amplitude": 35.708, "phase_angle": 17.895, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.954, "filter_rmsd": 0.041, "frame": { "rmsd": 0.012, "origin": [ 176.700, 204.633, 186.556 ], "x_axis": [ 0.525, -0.851, 0.001 ], "y_axis": [ 0.569, 0.351, -0.744 ], "z_axis": [ 0.633, 0.391, 0.668 ], "quaternion": [ 0.798, -0.356, 0.198, -0.445 ] } }, { "index": 726, "index_chain": 726, "chain_name": "A", "nt_resnum": 728, "nt_name": "G", "nt_code": "G", "nt_id": "///A/728", "linked_nts": [ "///A/727", "///A/729" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.889, "beta": 171.625, "gamma": 50.961, "delta": 81.325, "epsilon": -168.396, "zeta": -77.944, "epsilon_zeta": -90.453, "bb_type": "BI", "chi": -166.149, "glyco_bond": "anti", "C5prime_xyz": [ -1.404, 8.722, 0.872 ], "P_xyz": [ 1.133, 9.162, 1.326 ], "form": "A", "ssZp": 4.417, "Dp": 4.454, "splay_angle": 22.580, "splay_distance": 3.828, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 163.267, "theta": -130.719, "eta_prime": -179.559, "theta_prime": -137.304, "eta_base": -131.455, "theta_base": -113.271, "v0": 0.804, "v1": -22.901, "v2": 35.001, "v3": -35.492, "v4": 21.908, "amplitude": 36.673, "phase_angle": 17.369, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.971, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 178.269, 204.571, 189.801 ], "x_axis": [ 0.741, -0.477, -0.474 ], "y_axis": [ 0.142, 0.800, -0.583 ], "z_axis": [ 0.657, 0.365, 0.660 ], "quaternion": [ 0.894, -0.265, 0.316, -0.173 ] } }, { "index": 727, "index_chain": 727, "chain_name": "A", "nt_resnum": 729, "nt_name": "G", "nt_code": "G", "nt_id": "///A/729", "linked_nts": [ "///A/728", "///A/730" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": 161.615, "beta": -148.572, "gamma": 167.997, "delta": 84.060, "epsilon": -157.131, "zeta": -66.471, "epsilon_zeta": -90.661, "bb_type": "BI", "chi": 175.071, "glyco_bond": "anti", "C5prime_xyz": [ -1.761, 8.385, 1.897 ], "P_xyz": [ 0.309, 9.828, 1.189 ], "form": "A", "ssZp": 4.219, "Dp": 4.414, "splay_angle": 23.963, "splay_distance": 3.713, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 166.894, "theta": -159.110, "eta_prime": -171.848, "theta_prime": -158.141, "eta_base": -124.909, "theta_base": -132.545, "v0": -0.973, "v1": -19.985, "v2": 32.030, "v3": -33.511, "v4": 21.785, "amplitude": 34.131, "phase_angle": 20.207, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.679, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 180.961, 203.529, 192.315 ], "x_axis": [ 0.680, -0.004, -0.733 ], "y_axis": [ -0.251, 0.938, -0.238 ], "z_axis": [ 0.689, 0.346, 0.637 ], "quaternion": [ 0.902, -0.162, 0.394, 0.069 ] } }, { "index": 728, "index_chain": 728, "chain_name": "A", "nt_resnum": 730, "nt_name": "U", "nt_code": "U", "nt_id": "///A/730", "linked_nts": [ "///A/729", "///A/731" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop", "alpha": -83.974, "beta": -158.574, "gamma": 54.606, "delta": 87.179, "epsilon": -170.828, "zeta": -75.177, "epsilon_zeta": -95.651, "bb_type": "BI", "chi": -152.170, "glyco_bond": "anti", "C5prime_xyz": [ -1.177, 8.693, 0.122 ], "P_xyz": [ 1.286, 8.982, 0.984 ], "form": "A", "ssZp": 4.026, "Dp": 4.291, "splay_angle": 22.004, "splay_distance": 3.814, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 170.077, "theta": -127.458, "eta_prime": -177.217, "theta_prime": -138.245, "eta_base": -141.578, "theta_base": -124.960, "v0": 2.184, "v1": -21.351, "v2": 31.323, "v3": -30.952, "v4": 18.194, "amplitude": 32.410, "phase_angle": 14.878, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.489, "filter_rmsd": 0.104, "frame": { "rmsd": 0.009, "origin": [ 183.600, 202.748, 194.808 ], "x_axis": [ 0.401, 0.595, -0.697 ], "y_axis": [ -0.617, 0.738, 0.275 ], "z_axis": [ 0.678, 0.320, 0.662 ], "quaternion": [ 0.837, -0.013, 0.411, 0.362 ] } }, { "index": 729, "index_chain": 729, "chain_name": "A", "nt_resnum": 731, "nt_name": "G", "nt_code": "G", "nt_id": "///A/731", "linked_nts": [ "///A/730", "///A/732" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate", "alpha": 149.203, "beta": -158.677, "gamma": 174.594, "delta": 80.565, "epsilon": -98.524, "zeta": -127.593, "epsilon_zeta": 29.069, "bb_type": "--", "chi": -174.773, "glyco_bond": "anti", "C5prime_xyz": [ -1.328, 8.473, 1.377 ], "P_xyz": [ 0.221, 10.159, 0.137 ], "form": ".", "ssZp": 4.553, "Dp": 4.771, "splay_angle": 39.969, "splay_distance": 6.253, "splay_ratio": 0.342, "d22": null, "d64": null, "eta": 166.271, "theta": -167.634, "eta_prime": 177.127, "theta_prime": -162.082, "eta_base": -152.471, "theta_base": -147.038, "v0": 4.437, "v1": -26.982, "v2": 38.081, "v3": -36.592, "v4": 20.277, "amplitude": 38.968, "phase_angle": 12.251, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.810, "filter_rmsd": 0.017, "frame": { "rmsd": 0.017, "origin": [ 187.116, 202.559, 196.274 ], "x_axis": [ 0.165, 0.843, -0.513 ], "y_axis": [ -0.682, 0.473, 0.558 ], "z_axis": [ 0.712, 0.258, 0.653 ], "quaternion": [ 0.757, 0.099, 0.405, 0.504 ] } }, { "index": 730, "index_chain": 730, "chain_name": "A", "nt_resnum": 732, "nt_name": "A", "nt_code": "A", "nt_id": "///A/732", "linked_nts": [ "///A/731", "///A/733" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,BII,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart", "alpha": 43.224, "beta": -173.786, "gamma": -53.709, "delta": 144.730, "epsilon": -113.855, "zeta": 138.998, "epsilon_zeta": 107.147, "bb_type": "BII", "chi": 80.260, "glyco_bond": "syn", "C5prime_xyz": [ -5.164, 5.009, 2.029 ], "P_xyz": [ -7.645, 4.507, 2.678 ], "form": ".", "ssZp": -1.313, "Dp": 1.294, "splay_angle": 126.964, "splay_distance": 19.052, "splay_ratio": 0.895, "d22": null, "d64": null, "eta": -156.649, "theta": 95.721, "eta_prime": -158.329, "theta_prime": 79.787, "eta_base": -157.534, "theta_base": 42.956, "v0": -27.375, "v1": 39.993, "v2": -36.545, "v3": 21.760, "v4": 3.265, "amplitude": 39.846, "phase_angle": 156.514, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "7r", "suiteness": 0.323, "filter_rmsd": 0.045, "frame": { "rmsd": 0.020, "origin": [ 192.430, 203.378, 199.466 ], "x_axis": [ 0.645, -0.688, -0.333 ], "y_axis": [ -0.121, -0.523, 0.844 ], "z_axis": [ -0.755, -0.504, -0.421 ], "quaternion": [ 0.419, 0.804, -0.252, -0.338 ] } }, { "index": 731, "index_chain": 731, "chain_name": "A", "nt_resnum": 733, "nt_name": "U", "nt_code": "U", "nt_id": "///A/733", "linked_nts": [ "///A/732", "///A/734" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,junction-loop,phosphate,splayed-apart", "alpha": -87.709, "beta": -174.598, "gamma": -118.124, "delta": 150.774, "epsilon": -79.533, "zeta": -97.341, "epsilon_zeta": 17.808, "bb_type": "--", "chi": -165.792, "glyco_bond": "anti", "C5prime_xyz": [ -2.192, 8.489, 1.237 ], "P_xyz": [ -1.585, 11.005, 1.613 ], "form": ".", "ssZp": 0.009, "Dp": 0.357, "splay_angle": 106.112, "splay_distance": 15.102, "splay_ratio": 0.799, "d22": 9.119, "d64": 10.949, "eta": 85.029, "theta": -110.750, "eta_prime": 64.007, "theta_prime": -109.897, "eta_base": 94.113, "theta_base": -76.332, "v0": -23.210, "v1": 38.836, "v2": -38.642, "v3": 26.239, "v4": -2.138, "amplitude": 40.160, "phase_angle": 164.193, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.008, "origin": [ 178.837, 199.715, 212.303 ], "x_axis": [ -0.528, 0.848, -0.045 ], "y_axis": [ 0.839, 0.513, -0.182 ], "z_axis": [ -0.132, -0.134, -0.982 ], "quaternion": [ -0.025, 0.485, 0.869, -0.091 ] } }, { "index": 732, "index_chain": 732, "chain_name": "A", "nt_resnum": 734, "nt_name": "C", "nt_code": "C", "nt_id": "///A/734", "linked_nts": [ "///A/733", "///A/735" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart", "alpha": -82.524, "beta": -174.401, "gamma": 53.119, "delta": 83.277, "epsilon": -149.236, "zeta": -51.018, "epsilon_zeta": -98.218, "bb_type": "BI", "chi": -175.612, "glyco_bond": "anti", "C5prime_xyz": [ -1.306, 8.527, 1.433 ], "P_xyz": [ 1.090, 8.710, 2.454 ], "form": ".", "ssZp": 4.557, "Dp": 4.584, "splay_angle": 28.486, "splay_distance": 4.347, "splay_ratio": 0.247, "d22": 3.701, "d64": 3.528, "eta": 147.499, "theta": -123.374, "eta_prime": -171.184, "theta_prime": -119.921, "eta_base": -141.977, "theta_base": -64.689, "v0": 1.888, "v1": -23.396, "v2": 34.674, "v3": -34.561, "v4": 20.636, "amplitude": 36.010, "phase_angle": 15.659, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.427, "filter_rmsd": 0.062, "frame": { "rmsd": 0.008, "origin": [ 189.730, 196.446, 202.368 ], "x_axis": [ -0.255, 0.961, -0.110 ], "y_axis": [ -0.368, 0.009, 0.930 ], "z_axis": [ 0.894, 0.278, 0.352 ], "quaternion": [ 0.526, 0.310, 0.477, 0.632 ] } }, { "index": 733, "index_chain": 733, "chain_name": "A", "nt_resnum": 735, "nt_name": "U", "nt_code": "U", "nt_id": "///A/735", "linked_nts": [ "///A/734", "///A/736" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -86.586, "beta": -177.843, "gamma": 58.950, "delta": 84.000, "epsilon": -153.531, "zeta": -73.096, "epsilon_zeta": -80.436, "bb_type": "BI", "chi": -163.548, "glyco_bond": "anti", "C5prime_xyz": [ -1.223, 8.583, 0.755 ], "P_xyz": [ 1.373, 8.792, 1.055 ], "form": ".", "ssZp": 4.501, "Dp": 4.608, "splay_angle": 29.898, "splay_distance": 4.723, "splay_ratio": 0.260, "d22": null, "d64": null, "eta": 155.843, "theta": -147.274, "eta_prime": -177.490, "theta_prime": -146.061, "eta_base": -98.590, "theta_base": -133.213, "v0": 4.533, "v1": -25.308, "v2": 35.291, "v3": -33.646, "v4": 18.368, "amplitude": 36.019, "phase_angle": 11.538, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.478, "filter_rmsd": 0.102, "frame": { "rmsd": 0.012, "origin": [ 191.529, 200.189, 203.655 ], "x_axis": [ -0.460, 0.519, 0.721 ], "y_axis": [ 0.060, -0.791, 0.608 ], "z_axis": [ 0.886, 0.323, 0.333 ], "quaternion": [ 0.143, 0.500, 0.290, 0.804 ] } }, { "index": 734, "index_chain": 734, "chain_name": "A", "nt_resnum": 736, "nt_name": "A", "nt_code": "A", "nt_id": "///A/736", "linked_nts": [ "///A/735", "///A/737" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop", "alpha": -71.439, "beta": -165.614, "gamma": 47.875, "delta": 83.119, "epsilon": -139.131, "zeta": -77.820, "epsilon_zeta": -61.311, "bb_type": "BI", "chi": -166.519, "glyco_bond": "anti", "C5prime_xyz": [ -1.369, 8.691, 0.933 ], "P_xyz": [ 0.895, 9.106, 2.174 ], "form": "A", "ssZp": 4.398, "Dp": 4.550, "splay_angle": 22.962, "splay_distance": 3.688, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 175.087, "theta": -144.252, "eta_prime": 179.303, "theta_prime": -140.413, "eta_base": -161.327, "theta_base": -110.183, "v0": -0.547, "v1": -20.992, "v2": 33.296, "v3": -34.517, "v4": 22.151, "amplitude": 35.315, "phase_angle": 19.468, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.766, "filter_rmsd": 0.047, "frame": { "rmsd": 0.014, "origin": [ 195.202, 203.157, 203.737 ], "x_axis": [ -0.775, -0.039, 0.631 ], "y_axis": [ 0.160, -0.978, 0.135 ], "z_axis": [ 0.611, 0.206, 0.764 ], "quaternion": [ -0.053, 0.331, 0.091, 0.938 ] } }, { "index": 735, "index_chain": 735, "chain_name": "A", "nt_resnum": 737, "nt_name": "C", "nt_code": "C", "nt_id": "///A/737", "linked_nts": [ "///A/736", "///A/738" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -68.323, "beta": 161.219, "gamma": 59.468, "delta": 78.966, "epsilon": -155.439, "zeta": -68.790, "epsilon_zeta": -86.648, "bb_type": "BI", "chi": -168.155, "glyco_bond": "anti", "C5prime_xyz": [ -1.538, 8.740, 0.963 ], "P_xyz": [ 1.017, 9.270, 0.915 ], "form": "A", "ssZp": 4.560, "Dp": 4.587, "splay_angle": 24.864, "splay_distance": 3.934, "splay_ratio": 0.219, "d22": 4.291, "d64": 4.681, "eta": 158.674, "theta": -147.023, "eta_prime": 175.957, "theta_prime": -148.885, "eta_base": -138.837, "theta_base": -123.747, "v0": -0.212, "v1": -23.345, "v2": 36.706, "v3": -37.791, "v4": 23.945, "amplitude": 38.789, "phase_angle": 18.866, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.848, "filter_rmsd": 0.059, "frame": { "rmsd": 0.009, "origin": [ 196.596, 204.969, 206.632 ], "x_axis": [ -0.617, -0.575, 0.537 ], "y_axis": [ 0.560, -0.800, -0.214 ], "z_axis": [ 0.553, 0.169, 0.816 ], "quaternion": [ -0.316, 0.303, -0.012, 0.899 ] } }, { "index": 736, "index_chain": 736, "chain_name": "A", "nt_resnum": 738, "nt_name": "C", "nt_code": "C", "nt_id": "///A/738", "linked_nts": [ "///A/737", "///A/739" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -70.686, "beta": 171.972, "gamma": 64.549, "delta": 79.914, "epsilon": -156.308, "zeta": -71.190, "epsilon_zeta": -85.118, "bb_type": "BI", "chi": -172.318, "glyco_bond": "anti", "C5prime_xyz": [ -1.471, 8.655, 1.219 ], "P_xyz": [ 1.081, 9.177, 1.428 ], "form": "A", "ssZp": 4.592, "Dp": 4.582, "splay_angle": 23.564, "splay_distance": 3.799, "splay_ratio": 0.211, "d22": 4.766, "d64": 5.004, "eta": 170.212, "theta": -150.895, "eta_prime": -174.940, "theta_prime": -151.520, "eta_base": -131.526, "theta_base": -136.835, "v0": 0.487, "v1": -23.475, "v2": 36.211, "v3": -36.914, "v4": 22.966, "amplitude": 38.045, "phase_angle": 17.864, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.756, "filter_rmsd": 0.059, "frame": { "rmsd": 0.008, "origin": [ 196.966, 206.406, 210.276 ], "x_axis": [ -0.226, -0.920, 0.321 ], "y_axis": [ 0.788, -0.367, -0.494 ], "z_axis": [ 0.572, 0.141, 0.808 ], "quaternion": [ 0.551, -0.288, 0.114, -0.775 ] } }, { "index": 737, "index_chain": 737, "chain_name": "A", "nt_resnum": 739, "nt_name": "C", "nt_code": "C", "nt_id": "///A/739", "linked_nts": [ "///A/738", "///A/740" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor,ribose-zipper,phosphate", "alpha": -72.994, "beta": -178.025, "gamma": 58.422, "delta": 80.383, "epsilon": -152.146, "zeta": -70.405, "epsilon_zeta": -81.741, "bb_type": "BI", "chi": -163.823, "glyco_bond": "anti", "C5prime_xyz": [ -1.473, 8.787, 0.721 ], "P_xyz": [ 1.044, 9.372, 1.103 ], "form": "A", "ssZp": 4.475, "Dp": 4.577, "splay_angle": 23.212, "splay_distance": 3.700, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 170.973, "theta": -147.413, "eta_prime": -179.298, "theta_prime": -146.156, "eta_base": -152.352, "theta_base": -121.971, "v0": -0.214, "v1": -22.673, "v2": 35.590, "v3": -36.671, "v4": 23.259, "amplitude": 37.615, "phase_angle": 18.885, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.881, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 196.802, 207.763, 213.820 ], "x_axis": [ 0.136, -0.991, 0.018 ], "y_axis": [ 0.838, 0.105, -0.535 ], "z_axis": [ 0.528, 0.088, 0.845 ], "quaternion": [ 0.722, -0.216, 0.177, -0.633 ] } }, { "index": 738, "index_chain": 738, "chain_name": "A", "nt_resnum": 740, "nt_name": "A", "nt_code": "A", "nt_id": "///A/740", "linked_nts": [ "///A/739", "///A/741" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor,ribose-zipper,phosphate", "alpha": -77.548, "beta": -174.322, "gamma": 53.280, "delta": 80.990, "epsilon": -153.542, "zeta": -65.134, "epsilon_zeta": -88.407, "bb_type": "BI", "chi": -159.668, "glyco_bond": "anti", "C5prime_xyz": [ -1.285, 8.729, 0.490 ], "P_xyz": [ 1.245, 9.231, 0.933 ], "form": "A", "ssZp": 4.399, "Dp": 4.593, "splay_angle": 26.035, "splay_distance": 4.103, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 163.612, "theta": -143.161, "eta_prime": 173.953, "theta_prime": -139.110, "eta_base": -150.004, "theta_base": -104.926, "v0": 1.642, "v1": -24.144, "v2": 36.195, "v3": -36.195, "v4": 21.801, "amplitude": 37.678, "phase_angle": 16.127, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.825, "filter_rmsd": 0.044, "frame": { "rmsd": 0.011, "origin": [ 197.457, 207.145, 217.408 ], "x_axis": [ 0.414, -0.751, -0.515 ], "y_axis": [ 0.659, 0.637, -0.400 ], "z_axis": [ 0.628, -0.174, 0.758 ], "quaternion": [ 0.838, -0.068, 0.341, -0.421 ] } }, { "index": 739, "index_chain": 739, "chain_name": "A", "nt_resnum": 741, "nt_name": "U", "nt_code": "U", "nt_id": "///A/741", "linked_nts": [ "///A/740", "///A/742" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -68.495, "beta": 168.734, "gamma": 67.373, "delta": 82.805, "epsilon": -165.598, "zeta": -72.111, "epsilon_zeta": -93.487, "bb_type": "BI", "chi": -162.179, "glyco_bond": "anti", "C5prime_xyz": [ -1.443, 8.737, 0.647 ], "P_xyz": [ 1.138, 9.173, 0.540 ], "form": ".", "ssZp": 4.331, "Dp": 4.419, "splay_angle": 21.189, "splay_distance": 4.017, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 171.692, "theta": -127.681, "eta_prime": -166.112, "theta_prime": -145.301, "eta_base": -115.469, "theta_base": -153.286, "v0": -0.095, "v1": -21.586, "v2": 33.810, "v3": -34.790, "v4": 22.024, "amplitude": 35.705, "phase_angle": 18.750, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.652, "filter_rmsd": 0.103, "frame": { "rmsd": 0.008, "origin": [ 199.956, 204.640, 219.484 ], "x_axis": [ 0.720, -0.208, -0.662 ], "y_axis": [ 0.293, 0.956, 0.018 ], "z_axis": [ 0.629, -0.207, 0.749 ], "quaternion": [ 0.925, 0.061, 0.349, -0.135 ] } }, { "index": 740, "index_chain": 740, "chain_name": "A", "nt_resnum": 742, "nt_name": "G", "nt_code": "G", "nt_id": "///A/742", "linked_nts": [ "///A/741", "///A/743" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": 154.051, "beta": -174.235, "gamma": 177.778, "delta": 80.830, "epsilon": -138.836, "zeta": -72.475, "epsilon_zeta": -66.361, "bb_type": "BI", "chi": -169.451, "glyco_bond": "anti", "C5prime_xyz": [ -1.583, 8.709, 1.063 ], "P_xyz": [ -0.373, 10.691, -0.145 ], "form": ".", "ssZp": 4.546, "Dp": 4.630, "splay_angle": 28.252, "splay_distance": 4.415, "splay_ratio": 0.244, "d22": null, "d64": null, "eta": 160.281, "theta": -167.139, "eta_prime": 169.779, "theta_prime": -157.748, "eta_base": -179.599, "theta_base": -109.109, "v0": -0.428, "v1": -22.138, "v2": 35.011, "v3": -36.173, "v4": 23.096, "amplitude": 37.077, "phase_angle": 19.217, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.939, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 200.072, 201.231, 221.607 ], "x_axis": [ 0.700, 0.067, -0.711 ], "y_axis": [ 0.233, 0.920, 0.317 ], "z_axis": [ 0.675, -0.387, 0.628 ], "quaternion": [ 0.901, 0.195, 0.384, -0.046 ] } }, { "index": 741, "index_chain": 741, "chain_name": "A", "nt_resnum": 743, "nt_name": "U", "nt_code": "U", "nt_id": "///A/743", "linked_nts": [ "///A/742", "///A/744" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -57.075, "beta": 162.312, "gamma": 57.163, "delta": 83.469, "epsilon": -160.842, "zeta": -77.159, "epsilon_zeta": -83.683, "bb_type": "BI", "chi": -166.075, "glyco_bond": "anti", "C5prime_xyz": [ -1.467, 8.677, 0.886 ], "P_xyz": [ 1.121, 9.017, 1.064 ], "form": "A", "ssZp": 4.394, "Dp": 4.453, "splay_angle": 24.377, "splay_distance": 3.786, "splay_ratio": 0.211, "d22": 5.062, "d64": 4.780, "eta": 167.079, "theta": -154.744, "eta_prime": -169.200, "theta_prime": -155.903, "eta_base": -105.941, "theta_base": -140.436, "v0": 0.117, "v1": -21.366, "v2": 33.235, "v3": -34.103, "v4": 21.460, "amplitude": 35.031, "phase_angle": 18.427, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.865, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 204.267, 199.934, 222.064 ], "x_axis": [ 0.608, 0.740, -0.288 ], "y_axis": [ -0.360, 0.580, 0.731 ], "z_axis": [ 0.708, -0.341, 0.619 ], "quaternion": [ 0.838, 0.320, 0.297, 0.328 ] } }, { "index": 742, "index_chain": 742, "chain_name": "A", "nt_resnum": 744, "nt_name": "C", "nt_code": "C", "nt_id": "///A/744", "linked_nts": [ "///A/743", "///A/745" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,bulge", "alpha": -68.389, "beta": -174.259, "gamma": 50.146, "delta": 84.497, "epsilon": -144.057, "zeta": -79.663, "epsilon_zeta": -64.394, "bb_type": "BI", "chi": -156.075, "glyco_bond": "anti", "C5prime_xyz": [ -0.971, 8.705, 0.340 ], "P_xyz": [ 1.584, 8.878, 0.899 ], "form": "A", "ssZp": 4.259, "Dp": 4.617, "splay_angle": 22.135, "splay_distance": 3.597, "splay_ratio": 0.192, "d22": 4.317, "d64": 4.472, "eta": 174.855, "theta": -146.582, "eta_prime": 179.977, "theta_prime": -145.157, "eta_base": -156.523, "theta_base": -131.677, "v0": 3.578, "v1": -24.028, "v2": 34.252, "v3": -33.103, "v4": 18.664, "amplitude": 35.140, "phase_angle": 12.909, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.830, "filter_rmsd": 0.065, "frame": { "rmsd": 0.007, "origin": [ 206.800, 197.288, 223.019 ], "x_axis": [ 0.293, 0.954, 0.063 ], "y_axis": [ -0.585, 0.127, 0.801 ], "z_axis": [ 0.756, -0.271, 0.595 ], "quaternion": [ 0.710, 0.378, 0.244, 0.542 ] } }, { "index": 743, "index_chain": 743, "chain_name": "A", "nt_resnum": 745, "nt_name": "C", "nt_code": "C", "nt_id": "///A/745", "linked_nts": [ "///A/744", "///A/746" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BII,isolated-canonical,non-pair-contact,helix-end,bulge,junction-loop,splayed-apart", "alpha": -63.576, "beta": 158.201, "gamma": 62.402, "delta": 80.139, "epsilon": -130.136, "zeta": 147.883, "epsilon_zeta": 81.981, "bb_type": "BII", "chi": -162.235, "glyco_bond": "anti", "C5prime_xyz": [ -1.598, 8.849, 0.598 ], "P_xyz": [ 0.931, 9.420, 0.329 ], "form": ".", "ssZp": 4.349, "Dp": 4.627, "splay_angle": 128.354, "splay_distance": 16.908, "splay_ratio": 0.900, "d22": null, "d64": null, "eta": 170.803, "theta": 78.717, "eta_prime": -177.007, "theta_prime": 89.016, "eta_base": -152.408, "theta_base": 132.414, "v0": -2.716, "v1": -20.360, "v2": 34.284, "v3": -36.811, "v4": 24.967, "amplitude": 37.162, "phase_angle": 22.698, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.768, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 210.080, 196.130, 223.935 ], "x_axis": [ -0.031, 0.958, 0.285 ], "y_axis": [ -0.594, -0.247, 0.766 ], "z_axis": [ 0.804, -0.146, 0.576 ], "quaternion": [ 0.570, 0.400, 0.228, 0.681 ] } }, { "index": 744, "index_chain": 744, "chain_name": "A", "nt_resnum": 746, "nt_name": "A", "nt_code": "A", "nt_id": "///A/746", "linked_nts": [ "///A/745", "///A/747" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart", "alpha": -76.017, "beta": 178.119, "gamma": 41.685, "delta": 81.819, "epsilon": -153.033, "zeta": -58.435, "epsilon_zeta": -94.598, "bb_type": "BI", "chi": -166.894, "glyco_bond": "anti", "C5prime_xyz": [ -1.523, 8.685, 0.918 ], "P_xyz": [ 0.848, 9.282, 1.848 ], "form": ".", "ssZp": 4.453, "Dp": 4.518, "splay_angle": 39.546, "splay_distance": 6.396, "splay_ratio": 0.342, "d22": null, "d64": null, "eta": -165.617, "theta": -108.236, "eta_prime": -170.010, "theta_prime": -110.159, "eta_base": 154.893, "theta_base": -71.454, "v0": -0.542, "v1": -21.353, "v2": 33.852, "v3": -35.109, "v4": 22.505, "amplitude": 35.902, "phase_angle": 19.456, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.494, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 209.469, 181.338, 232.102 ], "x_axis": [ 0.347, 0.041, -0.937 ], "y_axis": [ -0.250, 0.967, -0.050 ], "z_axis": [ 0.904, 0.251, 0.346 ], "quaternion": [ 0.816, -0.092, 0.564, 0.089 ] } }, { "index": 745, "index_chain": 745, "chain_name": "A", "nt_resnum": 747, "nt_name": "G", "nt_code": "G", "nt_id": "///A/747", "linked_nts": [ "///A/746", "///A/748" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor", "alpha": 175.297, "beta": -160.007, "gamma": 154.769, "delta": 80.173, "epsilon": -137.810, "zeta": -76.510, "epsilon_zeta": -61.300, "bb_type": "BI", "chi": -175.219, "glyco_bond": "anti", "C5prime_xyz": [ -1.406, 8.533, 1.426 ], "P_xyz": [ 0.616, 9.824, 0.420 ], "form": "A", "ssZp": 4.642, "Dp": 4.683, "splay_angle": 21.985, "splay_distance": 3.616, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 158.054, "theta": -153.729, "eta_prime": -171.141, "theta_prime": -153.511, "eta_base": -107.206, "theta_base": -128.591, "v0": 2.475, "v1": -24.784, "v2": 36.515, "v3": -36.117, "v4": 21.203, "amplitude": 37.799, "phase_angle": 14.976, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.137, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 214.860, 183.543, 229.461 ], "x_axis": [ -0.088, 0.810, -0.580 ], "y_axis": [ -0.467, 0.481, 0.742 ], "z_axis": [ 0.880, 0.335, 0.336 ], "quaternion": [ 0.657, 0.155, 0.555, 0.485 ] } }, { "index": 746, "index_chain": 746, "chain_name": "A", "nt_resnum": 748, "nt_name": "G", "nt_code": "G", "nt_id": "///A/748", "linked_nts": [ "///A/747", "///A/749" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -50.096, "beta": 169.047, "gamma": 44.836, "delta": 79.652, "epsilon": -172.535, "zeta": -83.763, "epsilon_zeta": -88.773, "bb_type": "BI", "chi": -162.903, "glyco_bond": "anti", "C5prime_xyz": [ -1.794, 8.807, 0.673 ], "P_xyz": [ 0.644, 9.531, 1.227 ], "form": ".", "ssZp": 4.307, "Dp": 4.358, "splay_angle": 26.792, "splay_distance": 4.508, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 166.274, "theta": -138.809, "eta_prime": -175.910, "theta_prime": -143.745, "eta_base": -134.312, "theta_base": -121.954, "v0": -2.298, "v1": -20.876, "v2": 34.805, "v3": -37.154, "v4": 24.856, "amplitude": 37.557, "phase_angle": 22.070, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.708, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 218.192, 184.477, 228.408 ], "x_axis": [ -0.409, 0.904, -0.128 ], "y_axis": [ -0.294, 0.002, 0.956 ], "z_axis": [ 0.864, 0.428, 0.265 ], "quaternion": [ 0.463, 0.285, 0.535, 0.647 ] } }, { "index": 747, "index_chain": 747, "chain_name": "A", "nt_resnum": 749, "nt_name": "G", "nt_code": "G", "nt_id": "///A/749", "linked_nts": [ "///A/748", "///A/750" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": 160.099, "beta": -143.405, "gamma": 173.759, "delta": 81.546, "epsilon": -109.214, "zeta": -102.270, "epsilon_zeta": -6.944, "bb_type": "--", "chi": 170.796, "glyco_bond": "anti", "C5prime_xyz": [ -1.874, 8.326, 2.096 ], "P_xyz": [ 0.144, 9.881, 1.505 ], "form": "A", "ssZp": 4.462, "Dp": 4.547, "splay_angle": 22.691, "splay_distance": 3.581, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": -178.710, "theta": -154.826, "eta_prime": -168.019, "theta_prime": -148.559, "eta_base": -131.390, "theta_base": -107.563, "v0": -2.018, "v1": -20.250, "v2": 33.535, "v3": -35.672, "v4": 23.783, "amplitude": 36.111, "phase_angle": 21.772, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.659, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 221.771, 186.964, 227.258 ], "x_axis": [ -0.513, 0.789, 0.338 ], "y_axis": [ -0.154, -0.472, 0.868 ], "z_axis": [ 0.844, 0.393, 0.364 ], "quaternion": [ 0.308, 0.386, 0.411, 0.766 ] } }, { "index": 748, "index_chain": 748, "chain_name": "A", "nt_resnum": 750, "nt_name": "U", "nt_code": "U", "nt_id": "///A/750", "linked_nts": [ "///A/749", "///A/751" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,internal-loop", "alpha": -34.650, "beta": 145.184, "gamma": 37.880, "delta": 85.285, "epsilon": -137.437, "zeta": -73.221, "epsilon_zeta": -64.216, "bb_type": "BI", "chi": -162.058, "glyco_bond": "anti", "C5prime_xyz": [ -1.664, 8.794, 0.613 ], "P_xyz": [ 0.875, 9.047, 1.229 ], "form": ".", "ssZp": 4.145, "Dp": 4.379, "splay_angle": 30.770, "splay_distance": 4.914, "splay_ratio": 0.266, "d22": null, "d64": null, "eta": 164.178, "theta": -126.714, "eta_prime": -177.977, "theta_prime": -117.646, "eta_base": -126.417, "theta_base": -72.636, "v0": -4.872, "v1": -15.441, "v2": 28.572, "v3": -32.205, "v4": 23.416, "amplitude": 32.104, "phase_angle": 27.128, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.144, "filter_rmsd": 0.104, "frame": { "rmsd": 0.010, "origin": [ 224.093, 189.522, 228.200 ], "x_axis": [ -0.604, 0.187, 0.775 ], "y_axis": [ 0.246, -0.881, 0.404 ], "z_axis": [ 0.758, 0.434, 0.486 ], "quaternion": [ -0.017, 0.445, 0.243, 0.862 ] } }, { "index": 749, "index_chain": 749, "chain_name": "A", "nt_resnum": 751, "nt_name": "G", "nt_code": "G", "nt_id": "///A/751", "linked_nts": [ "///A/750", "///A/752" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -54.179, "beta": 162.707, "gamma": 66.265, "delta": 145.172, "epsilon": -151.709, "zeta": 174.946, "epsilon_zeta": 33.345, "bb_type": "--", "chi": -130.506, "glyco_bond": "anti", "C5prime_xyz": [ -1.808, 8.669, -0.692 ], "P_xyz": [ 0.762, 9.002, -0.353 ], "form": ".", "ssZp": 2.053, "Dp": 2.025, "splay_angle": 57.863, "splay_distance": 8.847, "splay_ratio": 0.486, "d22": null, "d64": null, "eta": 171.176, "theta": 156.256, "eta_prime": -140.893, "theta_prime": 144.145, "eta_base": -85.113, "theta_base": 165.887, "v0": -21.244, "v1": 34.335, "v2": -33.604, "v3": 22.229, "v4": -0.830, "amplitude": 35.226, "phase_angle": 162.545, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.806, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 225.572, 190.457, 232.792 ], "x_axis": [ -0.337, -0.660, 0.672 ], "y_axis": [ 0.695, -0.655, -0.295 ], "z_axis": [ 0.635, 0.368, 0.680 ], "quaternion": [ -0.414, 0.400, 0.022, 0.817 ] } }, { "index": 750, "index_chain": 750, "chain_name": "A", "nt_resnum": 752, "nt_name": "A", "nt_code": "A", "nt_id": "///A/752", "linked_nts": [ "///A/751", "///A/753" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -78.181, "beta": 171.706, "gamma": 49.335, "delta": 85.187, "epsilon": -137.661, "zeta": -80.728, "epsilon_zeta": -56.933, "bb_type": "BI", "chi": -165.241, "glyco_bond": "anti", "C5prime_xyz": [ -0.935, 8.433, 0.873 ], "P_xyz": [ 1.668, 8.319, 1.177 ], "form": ".", "ssZp": 4.558, "Dp": 4.734, "splay_angle": 32.312, "splay_distance": 4.884, "splay_ratio": 0.278, "d22": null, "d64": null, "eta": -173.042, "theta": -136.898, "eta_prime": 167.837, "theta_prime": -132.638, "eta_base": 173.907, "theta_base": -106.140, "v0": 7.909, "v1": -27.665, "v2": 35.833, "v3": -32.286, "v4": 15.437, "amplitude": 36.050, "phase_angle": 6.287, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.251, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 228.996, 197.057, 227.997 ], "x_axis": [ -0.157, -0.332, 0.930 ], "y_axis": [ 0.512, -0.832, -0.211 ], "z_axis": [ 0.844, 0.443, 0.301 ], "quaternion": [ -0.279, 0.586, 0.077, 0.757 ] } }, { "index": 751, "index_chain": 751, "chain_name": "A", "nt_resnum": 753, "nt_name": "A", "nt_code": "A", "nt_id": "///A/753", "linked_nts": [ "///A/752", "///A/754" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -49.019, "beta": 158.779, "gamma": 55.507, "delta": 83.022, "epsilon": -133.629, "zeta": -59.250, "epsilon_zeta": -74.379, "bb_type": "BI", "chi": -174.509, "glyco_bond": "anti", "C5prime_xyz": [ -1.396, 8.423, 1.372 ], "P_xyz": [ 1.206, 8.571, 1.515 ], "form": ".", "ssZp": 4.687, "Dp": 4.722, "splay_angle": 33.695, "splay_distance": 5.167, "splay_ratio": 0.291, "d22": null, "d64": null, "eta": 176.600, "theta": -116.665, "eta_prime": -165.567, "theta_prime": -114.881, "eta_base": -122.467, "theta_base": -68.664, "v0": 3.820, "v1": -25.410, "v2": 36.135, "v3": -34.934, "v4": 19.630, "amplitude": 37.061, "phase_angle": 12.833, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.680, "filter_rmsd": 0.038, "frame": { "rmsd": 0.010, "origin": [ 232.233, 199.114, 231.020 ], "x_axis": [ 0.095, -0.801, 0.591 ], "y_axis": [ 0.361, -0.526, -0.770 ], "z_axis": [ 0.928, 0.287, 0.239 ], "quaternion": [ -0.450, 0.588, -0.187, 0.646 ] } }, { "index": 752, "index_chain": 752, "chain_name": "A", "nt_resnum": 754, "nt_name": "G", "nt_code": "G", "nt_id": "///A/754", "linked_nts": [ "///A/753", "///A/755" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -65.267, "beta": 165.621, "gamma": 57.466, "delta": 80.458, "epsilon": -141.492, "zeta": -77.900, "epsilon_zeta": -63.592, "bb_type": "BI", "chi": -174.648, "glyco_bond": "anti", "C5prime_xyz": [ -1.538, 8.541, 1.379 ], "P_xyz": [ 1.023, 8.905, 1.715 ], "form": "A", "ssZp": 4.660, "Dp": 4.681, "splay_angle": 23.177, "splay_distance": 3.617, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 161.065, "theta": -142.448, "eta_prime": -170.871, "theta_prime": -141.863, "eta_base": -94.964, "theta_base": -111.469, "v0": 2.502, "v1": -24.872, "v2": 36.548, "v3": -36.126, "v4": 21.201, "amplitude": 37.822, "phase_angle": 14.911, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.796, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 235.960, 196.474, 233.435 ], "x_axis": [ 0.269, -0.889, -0.369 ], "y_axis": [ 0.085, 0.404, -0.911 ], "z_axis": [ 0.959, 0.214, 0.185 ], "quaternion": [ 0.682, -0.412, 0.487, -0.358 ] } }, { "index": 753, "index_chain": 753, "chain_name": "A", "nt_resnum": 755, "nt_name": "U", "nt_code": "U", "nt_id": "///A/755", "linked_nts": [ "///A/754", "///A/756" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -51.345, "beta": 169.055, "gamma": 42.307, "delta": 78.191, "epsilon": -141.629, "zeta": -86.327, "epsilon_zeta": -55.302, "bb_type": "BI", "chi": -166.545, "glyco_bond": "anti", "C5prime_xyz": [ -1.348, 8.620, 0.913 ], "P_xyz": [ 1.198, 9.001, 1.347 ], "form": "A", "ssZp": 4.606, "Dp": 4.731, "splay_angle": 21.387, "splay_distance": 3.331, "splay_ratio": 0.188, "d22": 4.096, "d64": 4.078, "eta": 166.726, "theta": -152.127, "eta_prime": 179.476, "theta_prime": -147.948, "eta_base": -133.371, "theta_base": -123.248, "v0": 3.574, "v1": -26.743, "v2": 38.606, "v3": -37.582, "v4": 21.422, "amplitude": 39.715, "phase_angle": 13.573, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.673, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 239.133, 195.527, 234.890 ], "x_axis": [ 0.240, -0.464, -0.853 ], "y_axis": [ -0.071, 0.868, -0.492 ], "z_axis": [ 0.968, 0.179, 0.175 ], "quaternion": [ 0.755, -0.222, 0.603, -0.130 ] } }, { "index": 754, "index_chain": 754, "chain_name": "A", "nt_resnum": 756, "nt_name": "U", "nt_code": "U", "nt_id": "///A/756", "linked_nts": [ "///A/755", "///A/757" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -45.418, "beta": 160.195, "gamma": 48.770, "delta": 82.382, "epsilon": -146.546, "zeta": -78.163, "epsilon_zeta": -68.384, "bb_type": "BI", "chi": -163.953, "glyco_bond": "anti", "C5prime_xyz": [ -1.421, 8.689, 0.773 ], "P_xyz": [ 1.151, 8.992, 1.090 ], "form": "A", "ssZp": 4.403, "Dp": 4.565, "splay_angle": 20.577, "splay_distance": 3.306, "splay_ratio": 0.180, "d22": 4.124, "d64": 4.129, "eta": 173.625, "theta": -143.811, "eta_prime": -174.445, "theta_prime": -144.402, "eta_base": -139.492, "theta_base": -117.813, "v0": 0.645, "v1": -22.344, "v2": 34.313, "v3": -34.929, "v4": 21.623, "amplitude": 36.004, "phase_angle": 17.631, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.570, "filter_rmsd": 0.102, "frame": { "rmsd": 0.006, "origin": [ 242.199, 194.368, 235.485 ], "x_axis": [ -0.010, 0.020, -1.000 ], "y_axis": [ -0.086, 0.996, 0.021 ], "z_axis": [ 0.996, 0.086, -0.009 ], "quaternion": [ 0.703, -0.023, 0.710, 0.038 ] } }, { "index": 755, "index_chain": 755, "chain_name": "A", "nt_resnum": 757, "nt_name": "C", "nt_code": "C", "nt_id": "///A/757", "linked_nts": [ "///A/756", "///A/758" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -52.474, "beta": 163.199, "gamma": 46.452, "delta": 79.529, "epsilon": -161.773, "zeta": -90.626, "epsilon_zeta": -71.147, "bb_type": "BI", "chi": -161.610, "glyco_bond": "anti", "C5prime_xyz": [ -1.480, 8.811, 0.606 ], "P_xyz": [ 1.076, 9.288, 0.866 ], "form": "A", "ssZp": 4.403, "Dp": 4.504, "splay_angle": 22.011, "splay_distance": 3.457, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": 164.028, "theta": -139.230, "eta_prime": 179.991, "theta_prime": -148.561, "eta_base": -135.443, "theta_base": -123.073, "v0": -0.556, "v1": -22.303, "v2": 35.460, "v3": -36.789, "v4": 23.520, "amplitude": 37.609, "phase_angle": 19.461, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.780, "filter_rmsd": 0.061, "frame": { "rmsd": 0.004, "origin": [ 245.255, 193.393, 234.685 ], "x_axis": [ -0.115, 0.548, -0.828 ], "y_axis": [ 0.002, 0.834, 0.552 ], "z_axis": [ 0.993, 0.062, -0.097 ], "quaternion": [ 0.637, 0.192, 0.715, 0.215 ] } }, { "index": 756, "index_chain": 756, "chain_name": "A", "nt_resnum": 758, "nt_name": "A", "nt_code": "A", "nt_id": "///A/758", "linked_nts": [ "///A/757", "///A/759" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 167.687, "beta": -152.385, "gamma": 148.676, "delta": 80.484, "epsilon": -105.325, "zeta": -104.757, "epsilon_zeta": -0.568, "bb_type": "--", "chi": 168.518, "glyco_bond": "anti", "C5prime_xyz": [ -1.367, 7.906, 2.276 ], "P_xyz": [ 0.941, 8.977, 1.679 ], "form": "A", "ssZp": 4.865, "Dp": 4.840, "splay_angle": 23.096, "splay_distance": 3.506, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 154.230, "theta": -152.717, "eta_prime": 164.658, "theta_prime": -149.704, "eta_base": -152.323, "theta_base": -123.617, "v0": 7.696, "v1": -29.297, "v2": 38.727, "v3": -35.359, "v4": 17.414, "amplitude": 39.065, "phase_angle": 7.542, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.020, "filter_rmsd": 0.037, "frame": { "rmsd": 0.010, "origin": [ 248.307, 192.887, 233.142 ], "x_axis": [ -0.405, 0.850, -0.336 ], "y_axis": [ 0.060, 0.392, 0.918 ], "z_axis": [ 0.912, 0.352, -0.210 ], "quaternion": [ 0.441, 0.321, 0.708, 0.448 ] } }, { "index": 757, "index_chain": 757, "chain_name": "A", "nt_resnum": 759, "nt_name": "G", "nt_code": "G", "nt_id": "///A/759", "linked_nts": [ "///A/758", "///A/760" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -54.552, "beta": 137.502, "gamma": 65.269, "delta": 81.536, "epsilon": -131.591, "zeta": -71.289, "epsilon_zeta": -60.302, "bb_type": "BI", "chi": 175.636, "glyco_bond": "anti", "C5prime_xyz": [ -1.818, 8.423, 1.854 ], "P_xyz": [ 0.782, 8.703, 1.874 ], "form": ".", "ssZp": 4.543, "Dp": 4.614, "splay_angle": 28.925, "splay_distance": 4.309, "splay_ratio": 0.250, "d22": null, "d64": null, "eta": 166.371, "theta": -123.469, "eta_prime": -178.123, "theta_prime": -123.633, "eta_base": -137.645, "theta_base": -56.086, "v0": -0.725, "v1": -21.438, "v2": 34.118, "v3": -35.518, "v4": 22.873, "amplitude": 36.248, "phase_angle": 19.739, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.803, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 250.495, 193.845, 230.575 ], "x_axis": [ -0.454, 0.846, 0.279 ], "y_axis": [ 0.309, -0.145, 0.940 ], "z_axis": [ 0.836, 0.513, -0.195 ], "quaternion": [ 0.227, 0.471, 0.613, 0.592 ] } }, { "index": 758, "index_chain": 758, "chain_name": "A", "nt_resnum": 760, "nt_name": "G", "nt_code": "G", "nt_id": "///A/760", "linked_nts": [ "///A/759", "///A/761" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -57.531, "beta": 165.117, "gamma": 48.861, "delta": 91.413, "epsilon": 172.176, "zeta": -65.511, "epsilon_zeta": -122.313, "bb_type": "BI", "chi": -153.883, "glyco_bond": "anti", "C5prime_xyz": [ -0.832, 8.599, 0.401 ], "P_xyz": [ 1.722, 8.292, 0.946 ], "form": ".", "ssZp": 3.733, "Dp": 3.969, "splay_angle": 14.688, "splay_distance": 2.468, "splay_ratio": 0.138, "d22": null, "d64": null, "eta": 158.144, "theta": -115.139, "eta_prime": -169.181, "theta_prime": -121.443, "eta_base": -74.859, "theta_base": -61.743, "v0": 5.651, "v1": -21.125, "v2": 27.666, "v3": -25.234, "v4": 12.514, "amplitude": 27.894, "phase_angle": 7.343, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.613, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 252.002, 197.442, 232.409 ], "x_axis": [ 0.124, 0.166, 0.978 ], "y_axis": [ 0.618, -0.784, 0.055 ], "z_axis": [ 0.776, 0.598, -0.200 ], "quaternion": [ -0.187, 0.726, 0.270, 0.604 ] } }, { "index": 759, "index_chain": 759, "chain_name": "A", "nt_resnum": 761, "nt_name": "U", "nt_code": "U", "nt_id": "///A/761", "linked_nts": [ "///A/760", "///A/762" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -172.240, "beta": -109.525, "gamma": 92.645, "delta": 77.955, "epsilon": -147.568, "zeta": -61.609, "epsilon_zeta": -85.959, "bb_type": "BI", "chi": -123.906, "glyco_bond": "anti", "C5prime_xyz": [ -1.978, 8.518, -1.588 ], "P_xyz": [ 0.598, 8.188, -1.990 ], "form": ".", "ssZp": 2.685, "Dp": 4.586, "splay_angle": 105.826, "splay_distance": 13.833, "splay_ratio": 0.801, "d22": null, "d64": null, "eta": 146.519, "theta": -91.067, "eta_prime": 169.939, "theta_prime": -138.086, "eta_base": -111.725, "theta_base": 157.492, "v0": -1.770, "v1": -21.927, "v2": 36.075, "v3": -38.050, "v4": 25.089, "amplitude": 38.684, "phase_angle": 21.163, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.109, "frame": { "rmsd": 0.008, "origin": [ 254.323, 197.801, 233.165 ], "x_axis": [ 0.541, -0.389, 0.745 ], "y_axis": [ 0.665, -0.344, -0.663 ], "z_axis": [ 0.515, 0.854, 0.072 ], "quaternion": [ 0.563, -0.673, -0.102, -0.468 ] } }, { "index": 760, "index_chain": 760, "chain_name": "A", "nt_resnum": 762, "nt_name": "A", "nt_code": "A", "nt_id": "///A/762", "linked_nts": [ "///A/761", "///A/763" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor,splayed-apart", "alpha": 119.012, "beta": 152.529, "gamma": 52.078, "delta": 88.889, "epsilon": -144.244, "zeta": -18.705, "epsilon_zeta": -125.538, "bb_type": "--", "chi": 167.746, "glyco_bond": "--", "C5prime_xyz": [ -1.082, 7.662, 2.343 ], "P_xyz": [ 1.425, 6.920, 2.601 ], "form": ".", "ssZp": 4.581, "Dp": 4.722, "splay_angle": 44.097, "splay_distance": 6.629, "splay_ratio": 0.382, "d22": null, "d64": null, "eta": -32.267, "theta": -74.401, "eta_prime": 1.269, "theta_prime": -79.715, "eta_base": 15.311, "theta_base": -45.742, "v0": 12.677, "v1": -30.345, "v2": 35.598, "v3": -29.285, "v4": 10.551, "amplitude": 35.613, "phase_angle": 358.334, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.010, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 260.452, 204.205, 222.546 ], "x_axis": [ 0.116, -0.616, -0.779 ], "y_axis": [ 0.391, -0.693, 0.606 ], "z_axis": [ -0.913, -0.375, 0.160 ], "quaternion": [ -0.382, -0.642, 0.087, 0.659 ] } }, { "index": 761, "index_chain": 761, "chain_name": "A", "nt_resnum": 763, "nt_name": "A", "nt_code": "A", "nt_id": "///A/763", "linked_nts": [ "///A/762", "///A/764" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor", "alpha": -100.002, "beta": -157.808, "gamma": 49.051, "delta": 82.120, "epsilon": -144.272, "zeta": -95.046, "epsilon_zeta": -49.226, "bb_type": "BI", "chi": -165.327, "glyco_bond": "anti", "C5prime_xyz": [ -1.400, 8.656, 0.853 ], "P_xyz": [ 0.916, 9.065, 2.019 ], "form": ".", "ssZp": 4.504, "Dp": 4.623, "splay_angle": 23.901, "splay_distance": 4.184, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 149.580, "theta": -129.108, "eta_prime": -174.260, "theta_prime": -134.392, "eta_base": -94.828, "theta_base": -114.301, "v0": 1.527, "v1": -23.001, "v2": 34.515, "v3": -34.648, "v4": 20.886, "amplitude": 35.955, "phase_angle": 16.271, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 257.936, 198.351, 220.717 ], "x_axis": [ 0.510, -0.778, 0.367 ], "y_axis": [ 0.130, 0.491, 0.861 ], "z_axis": [ -0.851, -0.391, 0.351 ], "quaternion": [ 0.767, 0.408, -0.397, -0.296 ] } }, { "index": 762, "index_chain": 762, "chain_name": "A", "nt_resnum": 764, "nt_name": "C", "nt_code": "C", "nt_id": "///A/764", "linked_nts": [ "///A/763", "///A/765" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": 125.410, "beta": -141.337, "gamma": -161.140, "delta": 82.013, "epsilon": -106.597, "zeta": -104.607, "epsilon_zeta": -1.989, "bb_type": "--", "chi": 179.563, "glyco_bond": "anti", "C5prime_xyz": [ -1.124, 8.298, 1.737 ], "P_xyz": [ 0.230, 10.236, 0.616 ], "form": ".", "ssZp": 4.783, "Dp": 4.830, "splay_angle": 59.433, "splay_distance": 7.858, "splay_ratio": 0.511, "d22": null, "d64": null, "eta": 171.685, "theta": -131.033, "eta_prime": -177.660, "theta_prime": -125.326, "eta_base": -141.888, "theta_base": -50.734, "v0": 7.182, "v1": -28.552, "v2": 37.963, "v3": -34.840, "v4": 17.436, "amplitude": 38.341, "phase_angle": 8.059, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.085, "filter_rmsd": 0.067, "frame": { "rmsd": 0.007, "origin": [ 255.418, 195.023, 220.404 ], "x_axis": [ 0.496, -0.494, 0.714 ], "y_axis": [ -0.152, 0.760, 0.632 ], "z_axis": [ -0.855, -0.422, 0.302 ], "quaternion": [ 0.800, 0.329, -0.490, -0.107 ] } }, { "index": 763, "index_chain": 763, "chain_name": "A", "nt_resnum": 765, "nt_name": "A", "nt_code": "A", "nt_id": "///A/765", "linked_nts": [ "///A/764", "///A/766" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate", "alpha": 116.374, "beta": -100.741, "gamma": -173.325, "delta": 77.279, "epsilon": -108.790, "zeta": -94.365, "epsilon_zeta": -14.425, "bb_type": "--", "chi": -29.060, "glyco_bond": "syn", "C5prime_xyz": [ -4.357, 4.539, -2.897 ], "P_xyz": [ -5.784, 2.580, -1.896 ], "form": ".", "ssZp": -4.590, "Dp": 4.850, "splay_angle": 22.442, "splay_distance": 3.415, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 161.196, "theta": -117.240, "eta_prime": -163.926, "theta_prime": -112.333, "eta_base": -62.760, "theta_base": -97.822, "v0": 4.419, "v1": -28.313, "v2": 40.287, "v3": -38.747, "v4": 21.596, "amplitude": 41.274, "phase_angle": 12.554, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 253.480, 196.654, 227.842 ], "x_axis": [ 0.442, -0.821, 0.361 ], "y_axis": [ -0.140, -0.461, -0.876 ], "z_axis": [ 0.886, 0.337, -0.319 ], "quaternion": [ -0.407, 0.745, -0.322, 0.418 ] } }, { "index": 764, "index_chain": 764, "chain_name": "A", "nt_resnum": 766, "nt_name": "C", "nt_code": "C", "nt_id": "///A/766", "linked_nts": [ "///A/765", "///A/767" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": 30.340, "beta": 112.543, "gamma": -0.711, "delta": 80.382, "epsilon": -161.015, "zeta": -85.575, "epsilon_zeta": -75.440, "bb_type": "BI", "chi": -154.880, "glyco_bond": "anti", "C5prime_xyz": [ -1.194, 8.816, 0.207 ], "P_xyz": [ 1.160, 8.557, 1.384 ], "form": ".", "ssZp": 4.288, "Dp": 4.536, "splay_angle": 31.981, "splay_distance": 5.025, "splay_ratio": 0.276, "d22": 4.995, "d64": 5.357, "eta": 147.299, "theta": -159.234, "eta_prime": -177.429, "theta_prime": -157.276, "eta_base": -131.175, "theta_base": -151.713, "v0": 1.274, "v1": -23.545, "v2": 35.685, "v3": -35.902, "v4": 21.845, "amplitude": 37.254, "phase_angle": 16.690, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.068, "frame": { "rmsd": 0.007, "origin": [ 250.952, 195.723, 229.941 ], "x_axis": [ -0.428, 0.881, -0.204 ], "y_axis": [ -0.209, -0.316, -0.926 ], "z_axis": [ -0.879, -0.354, 0.319 ], "quaternion": [ 0.379, -0.377, -0.445, 0.718 ] } }, { "index": 765, "index_chain": 765, "chain_name": "A", "nt_resnum": 767, "nt_name": "U", "nt_code": "U", "nt_id": "///A/767", "linked_nts": [ "///A/766", "///A/768" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -58.077, "beta": 173.405, "gamma": 53.169, "delta": 82.727, "epsilon": -148.539, "zeta": -76.001, "epsilon_zeta": -72.538, "bb_type": "BI", "chi": -166.763, "glyco_bond": "anti", "C5prime_xyz": [ -1.444, 8.646, 0.924 ], "P_xyz": [ 1.094, 9.052, 1.408 ], "form": "A", "ssZp": 4.499, "Dp": 4.581, "splay_angle": 20.782, "splay_distance": 3.335, "splay_ratio": 0.183, "d22": null, "d64": null, "eta": 177.512, "theta": -146.806, "eta_prime": -178.997, "theta_prime": -147.001, "eta_base": -168.134, "theta_base": -124.839, "v0": 0.662, "v1": -22.046, "v2": 33.815, "v3": -34.414, "v4": 21.292, "amplitude": 35.474, "phase_angle": 17.592, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.772, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 248.380, 193.029, 233.314 ], "x_axis": [ -0.250, 0.863, -0.439 ], "y_axis": [ -0.000, -0.454, -0.891 ], "z_axis": [ -0.968, -0.223, 0.114 ], "quaternion": [ 0.320, -0.522, -0.413, 0.674 ] } }, { "index": 766, "index_chain": 766, "chain_name": "A", "nt_resnum": 768, "nt_name": "G", "nt_code": "G", "nt_id": "///A/768", "linked_nts": [ "///A/767", "///A/769" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.311, "beta": 167.234, "gamma": 55.221, "delta": 79.622, "epsilon": -155.934, "zeta": -74.774, "epsilon_zeta": -81.159, "bb_type": "BI", "chi": -166.460, "glyco_bond": "anti", "C5prime_xyz": [ -1.579, 8.740, 0.884 ], "P_xyz": [ 0.974, 9.283, 1.080 ], "form": "A", "ssZp": 4.530, "Dp": 4.582, "splay_angle": 20.743, "splay_distance": 3.228, "splay_ratio": 0.181, "d22": null, "d64": null, "eta": 162.469, "theta": -152.155, "eta_prime": 176.625, "theta_prime": -152.870, "eta_base": -144.685, "theta_base": -125.921, "v0": 0.437, "v1": -23.356, "v2": 36.090, "v3": -36.817, "v4": 22.944, "amplitude": 37.935, "phase_angle": 17.943, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.962, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 245.484, 193.452, 234.912 ], "x_axis": [ -0.130, 0.533, -0.836 ], "y_axis": [ 0.060, -0.838, -0.543 ], "z_axis": [ -0.990, -0.121, 0.077 ], "quaternion": [ 0.165, -0.638, -0.232, 0.715 ] } }, { "index": 767, "index_chain": 767, "chain_name": "A", "nt_resnum": 769, "nt_name": "A", "nt_code": "A", "nt_id": "///A/769", "linked_nts": [ "///A/768", "///A/770" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.682, "beta": 170.166, "gamma": 52.768, "delta": 81.171, "epsilon": -144.112, "zeta": -78.962, "epsilon_zeta": -65.150, "bb_type": "BI", "chi": -166.760, "glyco_bond": "anti", "C5prime_xyz": [ -1.333, 8.620, 0.934 ], "P_xyz": [ 1.243, 8.918, 1.283 ], "form": "A", "ssZp": 4.550, "Dp": 4.660, "splay_angle": 22.903, "splay_distance": 3.586, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 169.924, "theta": -145.377, "eta_prime": -179.095, "theta_prime": -144.681, "eta_base": -138.158, "theta_base": -119.391, "v0": 2.451, "v1": -24.451, "v2": 35.972, "v3": -35.556, "v4": 20.892, "amplitude": 37.231, "phase_angle": 14.943, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.943, "filter_rmsd": 0.040, "frame": { "rmsd": 0.008, "origin": [ 242.507, 194.567, 235.474 ], "x_axis": [ -0.029, -0.008, -1.000 ], "y_axis": [ 0.071, -0.997, 0.005 ], "z_axis": [ -0.997, -0.071, 0.030 ], "quaternion": [ -0.027, -0.696, -0.023, 0.717 ] } }, { "index": 768, "index_chain": 768, "chain_name": "A", "nt_resnum": 770, "nt_name": "A", "nt_code": "A", "nt_id": "///A/770", "linked_nts": [ "///A/769", "///A/771" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -54.143, "beta": 168.473, "gamma": 43.234, "delta": 80.509, "epsilon": -176.383, "zeta": -89.115, "epsilon_zeta": -87.268, "bb_type": "BI", "chi": -171.411, "glyco_bond": "anti", "C5prime_xyz": [ -1.489, 8.562, 1.197 ], "P_xyz": [ 0.997, 8.913, 1.925 ], "form": "A", "ssZp": 4.390, "Dp": 4.407, "splay_angle": 23.533, "splay_distance": 3.642, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 162.127, "theta": -140.746, "eta_prime": 177.813, "theta_prime": -139.856, "eta_base": -138.270, "theta_base": -111.495, "v0": 1.844, "v1": -24.101, "v2": 36.007, "v3": -35.976, "v4": 21.528, "amplitude": 37.438, "phase_angle": 15.896, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.740, "filter_rmsd": 0.038, "frame": { "rmsd": 0.007, "origin": [ 239.169, 195.701, 234.815 ], "x_axis": [ 0.278, -0.513, -0.812 ], "y_axis": [ 0.105, -0.824, 0.556 ], "z_axis": [ -0.955, -0.240, -0.175 ], "quaternion": [ 0.264, 0.755, -0.135, -0.585 ] } }, { "index": 769, "index_chain": 769, "chain_name": "A", "nt_resnum": 771, "nt_name": "U", "nt_code": "U", "nt_id": "///A/771", "linked_nts": [ "///A/770", "///A/772" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -179.138, "beta": -123.561, "gamma": 142.342, "delta": 81.385, "epsilon": -130.331, "zeta": -65.610, "epsilon_zeta": -64.721, "bb_type": "BI", "chi": 179.962, "glyco_bond": "anti", "C5prime_xyz": [ -2.029, 8.606, 1.538 ], "P_xyz": [ 0.510, 9.037, 1.116 ], "form": ".", "ssZp": 4.271, "Dp": 4.401, "splay_angle": 27.594, "splay_distance": 4.385, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": 170.010, "theta": -118.685, "eta_prime": -172.715, "theta_prime": -123.060, "eta_base": -130.239, "theta_base": -62.110, "v0": -5.990, "v1": -16.414, "v2": 31.206, "v3": -35.567, "v4": 26.168, "amplitude": 35.380, "phase_angle": 28.114, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.009, "origin": [ 236.268, 195.828, 232.617 ], "x_axis": [ 0.341, -0.878, -0.335 ], "y_axis": [ -0.092, -0.386, 0.918 ], "z_axis": [ -0.935, -0.283, -0.213 ], "quaternion": [ 0.431, 0.696, -0.348, -0.456 ] } }, { "index": 770, "index_chain": 770, "chain_name": "A", "nt_resnum": 772, "nt_name": "G", "nt_code": "G", "nt_id": "///A/772", "linked_nts": [ "///A/771", "///A/773" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -58.069, "beta": 162.174, "gamma": 46.430, "delta": 85.737, "epsilon": -98.006, "zeta": -139.267, "epsilon_zeta": 41.261, "bb_type": "--", "chi": -150.803, "glyco_bond": "anti", "C5prime_xyz": [ -1.538, 8.809, 0.029 ], "P_xyz": [ 1.038, 9.225, 0.269 ], "form": ".", "ssZp": 3.416, "Dp": 4.436, "splay_angle": 20.595, "splay_distance": 3.817, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 169.918, "theta": -154.687, "eta_prime": -166.436, "theta_prime": -135.967, "eta_base": -85.634, "theta_base": -96.336, "v0": -0.913, "v1": -19.629, "v2": 31.521, "v3": -32.943, "v4": 21.358, "amplitude": 33.575, "phase_angle": 20.143, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.715, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 234.626, 191.772, 232.340 ], "x_axis": [ 0.090, -0.750, 0.655 ], "y_axis": [ -0.471, 0.548, 0.692 ], "z_axis": [ -0.878, -0.371, -0.304 ], "quaternion": [ 0.578, 0.460, -0.664, -0.121 ] } }, { "index": 771, "index_chain": 771, "chain_name": "A", "nt_resnum": 773, "nt_name": "G", "nt_code": "G", "nt_id": "///A/773", "linked_nts": [ "///A/772", "///A/774" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -34.041, "beta": 111.251, "gamma": 69.773, "delta": 142.835, "epsilon": -150.195, "zeta": 144.041, "epsilon_zeta": 65.764, "bb_type": "--", "chi": -100.901, "glyco_bond": "anti", "C5prime_xyz": [ -2.301, 8.203, -2.107 ], "P_xyz": [ 0.019, 7.344, -2.896 ], "form": ".", "ssZp": 1.937, "Dp": 2.022, "splay_angle": 48.910, "splay_distance": 7.915, "splay_ratio": 0.417, "d22": null, "d64": null, "eta": 162.315, "theta": -179.122, "eta_prime": -142.953, "theta_prime": 151.419, "eta_base": -108.991, "theta_base": 166.136, "v0": -24.055, "v1": 36.187, "v2": -33.881, "v3": 20.820, "v4": 1.864, "amplitude": 36.440, "phase_angle": 158.399, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 230.962, 191.112, 233.184 ], "x_axis": [ -0.124, -0.400, 0.908 ], "y_axis": [ -0.766, 0.620, 0.168 ], "z_axis": [ -0.630, -0.675, -0.383 ], "quaternion": [ 0.528, 0.400, -0.729, 0.174 ] } }, { "index": 772, "index_chain": 772, "chain_name": "A", "nt_resnum": 774, "nt_name": "A", "nt_code": "A", "nt_id": "///A/774", "linked_nts": [ "///A/773", "///A/775" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": 17.544, "beta": 125.235, "gamma": 5.324, "delta": 149.055, "epsilon": -168.798, "zeta": -90.910, "epsilon_zeta": -77.888, "bb_type": "BI", "chi": -120.685, "glyco_bond": "anti", "C5prime_xyz": [ -1.642, 8.469, -1.133 ], "P_xyz": [ 0.441, 8.959, 0.400 ], "form": "B", "ssZp": 2.096, "Dp": 2.075, "splay_angle": 23.369, "splay_distance": 3.990, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": -175.593, "theta": -108.102, "eta_prime": -174.669, "theta_prime": -121.785, "eta_base": -167.543, "theta_base": -78.692, "v0": -18.472, "v1": 33.957, "v2": -35.533, "v3": 25.727, "v4": -4.755, "amplitude": 36.242, "phase_angle": 168.652, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.013, "origin": [ 229.070, 190.708, 225.509 ], "x_axis": [ 0.008, -0.451, 0.892 ], "y_axis": [ -0.537, 0.751, 0.385 ], "z_axis": [ -0.844, -0.482, -0.236 ], "quaternion": [ 0.617, 0.351, -0.703, 0.035 ] } }, { "index": 773, "index_chain": 773, "chain_name": "A", "nt_resnum": 775, "nt_name": "G", "nt_code": "G", "nt_id": "///A/775", "linked_nts": [ "///A/774", "///A/776" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,bulge,internal-loop,phosphate,splayed-apart", "alpha": -67.692, "beta": 176.409, "gamma": 51.175, "delta": 143.031, "epsilon": -90.390, "zeta": -81.801, "epsilon_zeta": -8.589, "bb_type": "--", "chi": -104.140, "glyco_bond": "anti", "C5prime_xyz": [ -2.933, 8.214, -1.955 ], "P_xyz": [ -0.840, 9.760, -2.221 ], "form": ".", "ssZp": 0.898, "Dp": 0.852, "splay_angle": 135.282, "splay_distance": 17.130, "splay_ratio": 0.925, "d22": null, "d64": null, "eta": -169.439, "theta": -60.366, "eta_prime": -140.781, "theta_prime": -88.929, "eta_base": -91.831, "theta_base": -158.369, "v0": -28.620, "v1": 40.583, "v2": -36.258, "v3": 20.702, "v4": 4.741, "amplitude": 40.173, "phase_angle": 154.493, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 225.799, 188.548, 226.255 ], "x_axis": [ -0.359, 0.135, 0.924 ], "y_axis": [ -0.473, 0.827, -0.305 ], "z_axis": [ -0.805, -0.546, -0.233 ], "quaternion": [ 0.556, 0.109, -0.778, 0.273 ] } }, { "index": 774, "index_chain": 774, "chain_name": "A", "nt_resnum": 776, "nt_name": "G", "nt_code": "G", "nt_id": "///A/776", "linked_nts": [ "///A/775", "///A/777" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,turn,syn,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,multiplet,bulge,phosphate,splayed-apart", "alpha": -70.798, "beta": 174.170, "gamma": 167.232, "delta": 83.996, "epsilon": -132.875, "zeta": 76.565, "epsilon_zeta": 150.559, "bb_type": "--", "chi": 69.425, "glyco_bond": "syn", "C5prime_xyz": [ -5.170, 4.682, 2.148 ], "P_xyz": [ -5.357, 4.760, 4.750 ], "form": ".", "ssZp": -1.667, "Dp": 4.327, "splay_angle": 143.977, "splay_distance": 18.088, "splay_ratio": 0.952, "d22": null, "d64": null, "eta": -88.932, "theta": 14.284, "eta_prime": -52.195, "theta_prime": 11.607, "eta_base": 42.456, "theta_base": -31.027, "v0": -8.005, "v1": -13.683, "v2": 28.627, "v3": -34.113, "v4": 26.663, "amplitude": 33.764, "phase_angle": 32.021, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "2h", "suiteness": 0.753, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 220.970, 191.473, 210.082 ], "x_axis": [ -0.187, 0.603, -0.775 ], "y_axis": [ -0.491, 0.626, 0.606 ], "z_axis": [ 0.851, 0.494, 0.179 ], "quaternion": [ 0.636, 0.044, 0.639, 0.430 ] } }, { "index": 775, "index_chain": 775, "chain_name": "A", "nt_resnum": 777, "nt_name": "C", "nt_code": "C", "nt_id": "///A/777", "linked_nts": [ "///A/776", "///A/778" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart", "alpha": 61.725, "beta": 134.916, "gamma": -79.473, "delta": 81.073, "epsilon": -150.789, "zeta": -74.444, "epsilon_zeta": -76.345, "bb_type": "BI", "chi": -170.840, "glyco_bond": "anti", "C5prime_xyz": [ -1.357, 8.714, 1.149 ], "P_xyz": [ -1.156, 10.408, 3.145 ], "form": ".", "ssZp": 4.475, "Dp": 4.526, "splay_angle": 29.575, "splay_distance": 4.604, "splay_ratio": 0.256, "d22": 4.838, "d64": 5.085, "eta": 170.389, "theta": 172.845, "eta_prime": 178.698, "theta_prime": -169.739, "eta_base": -114.980, "theta_base": -126.184, "v0": -0.930, "v1": -21.200, "v2": 34.036, "v3": -35.505, "v4": 22.989, "amplitude": 36.232, "phase_angle": 20.047, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.007, "origin": [ 222.610, 187.344, 227.616 ], "x_axis": [ -0.441, 0.799, 0.408 ], "y_axis": [ -0.139, 0.388, -0.911 ], "z_axis": [ -0.886, -0.459, -0.060 ], "quaternion": [ -0.471, 0.240, 0.687, -0.498 ] } }, { "index": 776, "index_chain": 776, "chain_name": "A", "nt_resnum": 778, "nt_name": "C", "nt_code": "C", "nt_id": "///A/778", "linked_nts": [ "///A/777", "///A/779" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.403, "beta": 176.282, "gamma": 55.148, "delta": 82.850, "epsilon": -137.520, "zeta": -76.931, "epsilon_zeta": -60.589, "bb_type": "BI", "chi": -166.362, "glyco_bond": "anti", "C5prime_xyz": [ -1.159, 8.670, 0.915 ], "P_xyz": [ 1.407, 8.910, 1.391 ], "form": "A", "ssZp": 4.495, "Dp": 4.654, "splay_angle": 24.392, "splay_distance": 3.958, "splay_ratio": 0.213, "d22": 4.610, "d64": 4.510, "eta": 178.195, "theta": -140.174, "eta_prime": -170.459, "theta_prime": -138.458, "eta_base": -134.421, "theta_base": -121.980, "v0": 2.884, "v1": -24.059, "v2": 34.897, "v3": -34.197, "v4": 19.758, "amplitude": 35.984, "phase_angle": 14.118, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.973, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 218.848, 184.972, 228.810 ], "x_axis": [ -0.439, 0.884, -0.161 ], "y_axis": [ 0.250, -0.052, -0.967 ], "z_axis": [ -0.863, -0.464, -0.198 ], "quaternion": [ -0.279, 0.450, 0.629, -0.568 ] } }, { "index": 777, "index_chain": 777, "chain_name": "A", "nt_resnum": 779, "nt_name": "C", "nt_code": "C", "nt_id": "///A/779", "linked_nts": [ "///A/778", "///A/780" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor", "alpha": -72.342, "beta": 179.318, "gamma": 51.771, "delta": 79.646, "epsilon": -144.653, "zeta": -65.179, "epsilon_zeta": -79.473, "bb_type": "BI", "chi": -157.245, "glyco_bond": "anti", "C5prime_xyz": [ -1.448, 8.845, 0.331 ], "P_xyz": [ 1.068, 9.474, 0.627 ], "form": ".", "ssZp": 4.306, "Dp": 4.624, "splay_angle": 30.775, "splay_distance": 4.850, "splay_ratio": 0.265, "d22": null, "d64": null, "eta": 162.097, "theta": -137.302, "eta_prime": 173.190, "theta_prime": -131.979, "eta_base": -158.655, "theta_base": -88.943, "v0": -0.319, "v1": -22.926, "v2": 36.081, "v3": -37.221, "v4": 23.671, "amplitude": 38.165, "phase_angle": 19.022, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.890, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 215.146, 183.822, 229.608 ], "x_axis": [ 0.029, 0.849, -0.527 ], "y_axis": [ 0.367, -0.500, -0.784 ], "z_axis": [ -0.930, -0.171, -0.326 ], "quaternion": [ -0.225, 0.681, 0.447, -0.535 ] } }, { "index": 778, "index_chain": 778, "chain_name": "A", "nt_resnum": 780, "nt_name": "G", "nt_code": "G", "nt_id": "///A/780", "linked_nts": [ "///A/779", "///A/781" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -67.138, "beta": 161.990, "gamma": 68.729, "delta": 80.634, "epsilon": -163.284, "zeta": -78.809, "epsilon_zeta": -84.476, "bb_type": "BI", "chi": -162.065, "glyco_bond": "anti", "C5prime_xyz": [ -1.355, 8.718, 0.637 ], "P_xyz": [ 1.177, 9.094, 0.106 ], "form": ".", "ssZp": 4.464, "Dp": 4.555, "splay_angle": 42.528, "splay_distance": 7.290, "splay_ratio": 0.375, "d22": null, "d64": null, "eta": 166.769, "theta": -144.181, "eta_prime": -166.641, "theta_prime": -164.404, "eta_base": -103.450, "theta_base": -176.784, "v0": 3.141, "v1": -25.706, "v2": 37.302, "v3": -36.462, "v4": 21.033, "amplitude": 38.446, "phase_angle": 14.011, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.585, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 211.982, 185.601, 226.390 ], "x_axis": [ 0.282, 0.221, -0.934 ], "y_axis": [ 0.180, -0.968, -0.175 ], "z_axis": [ -0.943, -0.118, -0.312 ], "quaternion": [ -0.018, 0.800, 0.125, -0.586 ] } }, { "index": 779, "index_chain": 779, "chain_name": "A", "nt_resnum": 781, "nt_name": "A", "nt_code": "A", "nt_id": "///A/781", "linked_nts": [ "///A/780", "///A/782" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate", "alpha": 164.702, "beta": 158.504, "gamma": 177.588, "delta": 79.301, "epsilon": -127.465, "zeta": -71.071, "epsilon_zeta": -56.394, "bb_type": "BI", "chi": 171.632, "glyco_bond": "anti", "C5prime_xyz": [ -1.455, 8.082, 2.092 ], "P_xyz": [ -0.605, 10.544, 1.836 ], "form": ".", "ssZp": 4.852, "Dp": 4.818, "splay_angle": 30.843, "splay_distance": 4.570, "splay_ratio": 0.270, "d22": null, "d64": null, "eta": 158.062, "theta": -168.620, "eta_prime": 153.757, "theta_prime": -156.167, "eta_base": 150.577, "theta_base": -102.696, "v0": 5.837, "v1": -28.709, "v2": 39.483, "v3": -37.123, "v4": 19.722, "amplitude": 40.143, "phase_angle": 10.398, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.707, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 205.737, 187.826, 229.421 ], "x_axis": [ 0.646, 0.402, -0.649 ], "y_axis": [ 0.383, -0.906, -0.180 ], "z_axis": [ -0.660, -0.132, -0.739 ], "quaternion": [ -0.013, 0.907, 0.216, -0.361 ] } }, { "index": 780, "index_chain": 780, "chain_name": "A", "nt_resnum": 782, "nt_name": "A", "nt_code": "A", "nt_id": "///A/782", "linked_nts": [ "///A/781", "///A/783" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,cap-acceptor,phosphate", "alpha": -67.068, "beta": 168.541, "gamma": 62.488, "delta": 82.675, "epsilon": -152.247, "zeta": -27.899, "epsilon_zeta": -124.347, "bb_type": "BI", "chi": 177.691, "glyco_bond": "anti", "C5prime_xyz": [ -1.399, 8.290, 1.787 ], "P_xyz": [ 1.171, 8.509, 2.231 ], "form": ".", "ssZp": 4.617, "Dp": 4.624, "splay_angle": 41.809, "splay_distance": 6.286, "splay_ratio": 0.360, "d22": null, "d64": null, "eta": 164.738, "theta": -99.974, "eta_prime": -172.824, "theta_prime": -99.998, "eta_base": -104.726, "theta_base": -48.665, "v0": 3.388, "v1": -24.836, "v2": 35.584, "v3": -34.621, "v4": 19.748, "amplitude": 36.584, "phase_angle": 13.427, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.679, "filter_rmsd": 0.042, "frame": { "rmsd": 0.012, "origin": [ 205.132, 189.172, 225.096 ], "x_axis": [ 0.739, -0.469, -0.484 ], "y_axis": [ -0.231, -0.851, 0.471 ], "z_axis": [ -0.633, -0.236, -0.737 ], "quaternion": [ 0.194, 0.912, -0.192, -0.306 ] } }, { "index": 781, "index_chain": 781, "chain_name": "A", "nt_resnum": 783, "nt_name": "C", "nt_code": "C", "nt_id": "///A/783", "linked_nts": [ "///A/782", "///A/784" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor", "alpha": -104.730, "beta": -170.208, "gamma": 66.646, "delta": 84.673, "epsilon": -150.802, "zeta": -68.160, "epsilon_zeta": -82.643, "bb_type": "BI", "chi": -166.585, "glyco_bond": "anti", "C5prime_xyz": [ -1.273, 8.698, 0.938 ], "P_xyz": [ 1.262, 8.942, 1.564 ], "form": "A", "ssZp": 4.403, "Dp": 4.502, "splay_angle": 21.723, "splay_distance": 3.510, "splay_ratio": 0.190, "d22": 4.214, "d64": 4.168, "eta": 153.744, "theta": -139.436, "eta_prime": -170.148, "theta_prime": -139.920, "eta_base": -85.458, "theta_base": -114.801, "v0": 0.785, "v1": -21.527, "v2": 32.810, "v3": -33.276, "v4": 20.522, "amplitude": 34.368, "phase_angle": 17.318, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.009, "origin": [ 205.831, 184.129, 221.410 ], "x_axis": [ 0.004, -0.908, 0.418 ], "y_axis": [ -0.752, 0.273, 0.601 ], "z_axis": [ -0.660, -0.317, -0.682 ], "quaternion": [ -0.386, -0.594, 0.698, 0.102 ] } }, { "index": 782, "index_chain": 782, "chain_name": "A", "nt_resnum": 784, "nt_name": "C", "nt_code": "C", "nt_id": "///A/784", "linked_nts": [ "///A/783", "///A/785" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -77.112, "beta": 174.256, "gamma": 60.325, "delta": 82.606, "epsilon": -170.480, "zeta": -71.270, "epsilon_zeta": -99.210, "bb_type": "BI", "chi": -165.539, "glyco_bond": "anti", "C5prime_xyz": [ -1.552, 8.785, 0.810 ], "P_xyz": [ 0.984, 9.336, 1.187 ], "form": "A", "ssZp": 4.285, "Dp": 4.338, "splay_angle": 20.200, "splay_distance": 3.404, "splay_ratio": 0.183, "d22": 4.337, "d64": 4.299, "eta": 160.972, "theta": -133.110, "eta_prime": 179.678, "theta_prime": -141.012, "eta_base": -136.580, "theta_base": -118.518, "v0": -2.179, "v1": -19.659, "v2": 32.666, "v3": -34.811, "v4": 23.333, "amplitude": 35.237, "phase_angle": 22.022, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.812, "filter_rmsd": 0.061, "frame": { "rmsd": 0.008, "origin": [ 204.772, 182.189, 218.683 ], "x_axis": [ -0.313, -0.559, 0.768 ], "y_axis": [ -0.645, 0.718, 0.260 ], "z_axis": [ -0.697, -0.414, -0.586 ], "quaternion": [ -0.453, -0.372, 0.809, -0.048 ] } }, { "index": 783, "index_chain": 783, "chain_name": "A", "nt_resnum": 785, "nt_name": "C", "nt_code": "C", "nt_id": "///A/785", "linked_nts": [ "///A/784", "///A/786" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge", "alpha": -170.682, "beta": -158.125, "gamma": 133.751, "delta": 71.604, "epsilon": 82.285, "zeta": 97.950, "epsilon_zeta": -15.664, "bb_type": "--", "chi": -170.935, "glyco_bond": "anti", "C5prime_xyz": [ -1.668, 8.783, 1.139 ], "P_xyz": [ 0.667, 9.764, 0.527 ], "form": ".", "ssZp": 2.933, "Dp": 3.096, "splay_angle": 26.236, "splay_distance": 4.193, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": -174.248, "theta": -131.367, "eta_prime": -161.852, "theta_prime": -122.470, "eta_base": -125.756, "theta_base": -66.238, "v0": -1.867, "v1": -21.798, "v2": 36.111, "v3": -38.151, "v4": 25.173, "amplitude": 38.765, "phase_angle": 21.328, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.009, "origin": [ 203.720, 179.294, 217.233 ], "x_axis": [ -0.505, 0.006, 0.863 ], "y_axis": [ -0.444, 0.855, -0.266 ], "z_axis": [ -0.740, -0.518, -0.429 ], "quaternion": [ -0.480, -0.131, 0.835, -0.235 ] } }, { "index": 784, "index_chain": 784, "chain_name": "A", "nt_resnum": 786, "nt_name": "A", "nt_code": "A", "nt_id": "///A/786", "linked_nts": [ "///A/785", "///A/787" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,bulge,phosphate", "alpha": -113.598, "beta": 147.845, "gamma": 46.605, "delta": 143.621, "epsilon": -86.459, "zeta": 124.171, "epsilon_zeta": 149.370, "bb_type": "BII", "chi": -100.594, "glyco_bond": "anti", "C5prime_xyz": [ -2.330, 8.093, -2.141 ], "P_xyz": [ 0.239, 8.547, -2.453 ], "form": ".", "ssZp": 0.588, "Dp": 0.744, "splay_angle": 40.220, "splay_distance": 6.706, "splay_ratio": 0.350, "d22": null, "d64": null, "eta": 173.471, "theta": 152.006, "eta_prime": -138.080, "theta_prime": 139.298, "eta_base": -78.739, "theta_base": 155.649, "v0": -23.449, "v1": 36.053, "v2": -34.183, "v3": 21.529, "v4": 1.031, "amplitude": 36.457, "phase_angle": 159.658, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 199.547, 179.168, 216.848 ], "x_axis": [ -0.654, 0.699, 0.289 ], "y_axis": [ -0.028, 0.360, -0.933 ], "z_axis": [ -0.756, -0.618, -0.216 ], "quaternion": [ -0.350, 0.225, 0.747, -0.519 ] } }, { "index": 785, "index_chain": 785, "chain_name": "A", "nt_resnum": 787, "nt_name": "C", "nt_code": "C", "nt_id": "///A/787", "linked_nts": [ "///A/786", "///A/788" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge", "alpha": 166.204, "beta": -142.491, "gamma": 72.436, "delta": 81.857, "epsilon": -152.625, "zeta": -82.550, "epsilon_zeta": -70.076, "bb_type": "BI", "chi": -159.999, "glyco_bond": "anti", "C5prime_xyz": [ -1.278, 8.730, 0.539 ], "P_xyz": [ 1.256, 8.767, 1.179 ], "form": ".", "ssZp": 4.413, "Dp": 4.600, "splay_angle": 30.180, "splay_distance": 4.772, "splay_ratio": 0.261, "d22": null, "d64": null, "eta": 141.953, "theta": -151.746, "eta_prime": 128.157, "theta_prime": -149.295, "eta_base": 149.296, "theta_base": -135.526, "v0": 2.831, "v1": -24.843, "v2": 36.180, "v3": -35.562, "v4": 20.657, "amplitude": 37.350, "phase_angle": 14.378, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 203.335, 173.913, 215.112 ], "x_axis": [ -0.706, 0.666, 0.242 ], "y_axis": [ 0.109, 0.440, -0.891 ], "z_axis": [ -0.700, -0.603, -0.383 ], "quaternion": [ -0.296, 0.244, 0.795, -0.470 ] } }, { "index": 786, "index_chain": 786, "chain_name": "A", "nt_resnum": 788, "nt_name": "G", "nt_code": "G", "nt_id": "///A/788", "linked_nts": [ "///A/787", "///A/789" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -50.720, "beta": 174.348, "gamma": 50.155, "delta": 82.131, "epsilon": -140.616, "zeta": -79.613, "epsilon_zeta": -61.003, "bb_type": "BI", "chi": -159.102, "glyco_bond": "anti", "C5prime_xyz": [ -1.304, 8.803, 0.501 ], "P_xyz": [ 1.235, 9.217, 0.953 ], "form": "A", "ssZp": 4.295, "Dp": 4.590, "splay_angle": 22.086, "splay_distance": 3.578, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": -177.078, "theta": -144.095, "eta_prime": -170.616, "theta_prime": -142.330, "eta_base": -151.231, "theta_base": -114.416, "v0": 0.257, "v1": -22.044, "v2": 34.210, "v3": -35.012, "v4": 21.949, "amplitude": 36.016, "phase_angle": 18.221, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.763, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 200.356, 170.188, 214.956 ], "x_axis": [ -0.499, 0.865, -0.061 ], "y_axis": [ 0.434, 0.188, -0.881 ], "z_axis": [ -0.750, -0.466, -0.469 ], "quaternion": [ -0.235, 0.442, 0.734, -0.459 ] } }, { "index": 787, "index_chain": 787, "chain_name": "A", "nt_resnum": 789, "nt_name": "C", "nt_code": "C", "nt_id": "///A/789", "linked_nts": [ "///A/788", "///A/790" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -57.127, "beta": 158.874, "gamma": 52.944, "delta": 78.498, "epsilon": -147.917, "zeta": -75.810, "epsilon_zeta": -72.107, "bb_type": "BI", "chi": -162.171, "glyco_bond": "anti", "C5prime_xyz": [ -1.546, 8.827, 0.614 ], "P_xyz": [ 1.008, 9.345, 0.545 ], "form": "A", "ssZp": 4.455, "Dp": 4.617, "splay_angle": 23.041, "splay_distance": 3.639, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 163.420, "theta": -148.099, "eta_prime": 179.216, "theta_prime": -148.972, "eta_base": -137.861, "theta_base": -121.163, "v0": -1.111, "v1": -22.582, "v2": 36.366, "v3": -38.025, "v4": 24.686, "amplitude": 38.756, "phase_angle": 20.227, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.829, "filter_rmsd": 0.059, "frame": { "rmsd": 0.007, "origin": [ 197.000, 169.282, 214.109 ], "x_axis": [ -0.104, 0.889, -0.447 ], "y_axis": [ 0.584, -0.309, -0.751 ], "z_axis": [ -0.805, -0.338, -0.487 ], "quaternion": [ -0.158, 0.650, 0.566, -0.481 ] } }, { "index": 788, "index_chain": 788, "chain_name": "A", "nt_resnum": 790, "nt_name": "A", "nt_code": "A", "nt_id": "///A/790", "linked_nts": [ "///A/789", "///A/791" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.482, "beta": 168.489, "gamma": 56.609, "delta": 80.967, "epsilon": -153.830, "zeta": -72.385, "epsilon_zeta": -81.446, "bb_type": "BI", "chi": -170.649, "glyco_bond": "anti", "C5prime_xyz": [ -1.462, 8.609, 1.129 ], "P_xyz": [ 1.090, 9.040, 1.493 ], "form": "A", "ssZp": 4.543, "Dp": 4.574, "splay_angle": 23.559, "splay_distance": 3.702, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 165.052, "theta": -147.824, "eta_prime": 178.227, "theta_prime": -146.792, "eta_base": -137.852, "theta_base": -121.174, "v0": 0.513, "v1": -22.916, "v2": 35.283, "v3": -35.989, "v4": 22.411, "amplitude": 37.068, "phase_angle": 17.851, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.950, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 193.588, 169.416, 212.852 ], "x_axis": [ 0.452, 0.632, -0.629 ], "y_axis": [ 0.541, -0.755, -0.370 ], "z_axis": [ -0.709, -0.173, -0.683 ], "quaternion": [ -0.058, 0.850, 0.345, -0.394 ] } }, { "index": 789, "index_chain": 789, "chain_name": "A", "nt_resnum": 791, "nt_name": "C", "nt_code": "C", "nt_id": "///A/791", "linked_nts": [ "///A/790", "///A/792" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor", "alpha": -60.766, "beta": 176.934, "gamma": 51.446, "delta": 83.306, "epsilon": -166.755, "zeta": -77.164, "epsilon_zeta": -89.591, "bb_type": "BI", "chi": -162.794, "glyco_bond": "anti", "C5prime_xyz": [ -1.307, 8.746, 0.708 ], "P_xyz": [ 1.208, 9.075, 1.343 ], "form": "A", "ssZp": 4.268, "Dp": 4.375, "splay_angle": 22.025, "splay_distance": 3.528, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 171.726, "theta": -123.825, "eta_prime": -173.616, "theta_prime": -128.103, "eta_base": -133.639, "theta_base": -83.602, "v0": 0.171, "v1": -21.363, "v2": 33.261, "v3": -34.123, "v4": 21.422, "amplitude": 35.049, "phase_angle": 18.378, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.955, "filter_rmsd": 0.062, "frame": { "rmsd": 0.008, "origin": [ 190.649, 170.525, 210.892 ], "x_axis": [ 0.724, 0.108, -0.681 ], "y_axis": [ 0.188, -0.981, 0.045 ], "z_axis": [ -0.664, -0.161, -0.731 ], "quaternion": [ 0.055, 0.927, 0.080, -0.363 ] } }, { "index": 790, "index_chain": 790, "chain_name": "A", "nt_resnum": 792, "nt_name": "G", "nt_code": "G", "nt_id": "///A/792", "linked_nts": [ "///A/791", "///A/793" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": 171.873, "beta": -137.955, "gamma": 143.359, "delta": 82.072, "epsilon": -95.899, "zeta": -99.290, "epsilon_zeta": 3.391, "bb_type": "--", "chi": -172.776, "glyco_bond": "anti", "C5prime_xyz": [ -1.741, 8.688, 1.222 ], "P_xyz": [ 0.620, 9.360, 0.342 ], "form": ".", "ssZp": 4.253, "Dp": 4.501, "splay_angle": 34.832, "splay_distance": 5.579, "splay_ratio": 0.300, "d22": null, "d64": null, "eta": 166.628, "theta": -131.087, "eta_prime": -173.782, "theta_prime": -127.448, "eta_base": -112.451, "theta_base": -89.017, "v0": -2.812, "v1": -19.391, "v2": 32.844, "v3": -35.422, "v4": 24.136, "amplitude": 35.690, "phase_angle": 23.034, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 190.355, 170.575, 207.377 ], "x_axis": [ 0.712, -0.575, -0.402 ], "y_axis": [ -0.433, -0.811, 0.393 ], "z_axis": [ -0.552, -0.105, -0.827 ], "quaternion": [ 0.136, 0.915, -0.276, -0.261 ] } }, { "index": 791, "index_chain": 791, "chain_name": "A", "nt_resnum": 793, "nt_name": "U", "nt_code": "U", "nt_id": "///A/793", "linked_nts": [ "///A/792", "///A/794" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": -53.639, "beta": 141.208, "gamma": 63.304, "delta": 82.301, "epsilon": -102.908, "zeta": 123.704, "epsilon_zeta": 133.388, "bb_type": "--", "chi": -150.463, "glyco_bond": "anti", "C5prime_xyz": [ -1.615, 8.789, -0.073 ], "P_xyz": [ 0.815, 8.930, -1.017 ], "form": ".", "ssZp": 3.572, "Dp": 4.615, "splay_angle": 148.294, "splay_distance": 18.183, "splay_ratio": 0.962, "d22": 9.825, "d64": 11.871, "eta": 172.507, "theta": 108.935, "eta_prime": -167.502, "theta_prime": 91.408, "eta_base": -118.757, "theta_base": -78.490, "v0": -1.067, "v1": -21.162, "v2": 33.987, "v3": -35.581, "v4": 23.130, "amplitude": 36.229, "phase_angle": 20.263, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.745, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 189.252, 167.298, 202.999 ], "x_axis": [ 0.198, -0.968, 0.156 ], "y_axis": [ -0.869, -0.100, 0.485 ], "z_axis": [ -0.454, -0.231, -0.860 ], "quaternion": [ 0.244, 0.735, -0.625, -0.102 ] } }, { "index": 792, "index_chain": 792, "chain_name": "A", "nt_resnum": 794, "nt_name": "U", "nt_code": "U", "nt_id": "///A/794", "linked_nts": [ "///A/793", "///A/795" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,splayed-apart", "alpha": 50.655, "beta": 146.026, "gamma": 56.664, "delta": 80.753, "epsilon": -157.460, "zeta": 92.465, "epsilon_zeta": 110.075, "bb_type": "--", "chi": -157.683, "glyco_bond": "anti", "C5prime_xyz": [ -1.519, 8.781, 0.355 ], "P_xyz": [ 1.032, 9.043, -0.162 ], "form": ".", "ssZp": 4.347, "Dp": 4.546, "splay_angle": 133.210, "splay_distance": 17.399, "splay_ratio": 0.918, "d22": null, "d64": null, "eta": -46.579, "theta": 28.986, "eta_prime": -35.651, "theta_prime": 11.330, "eta_base": 138.642, "theta_base": 9.335, "v0": -0.315, "v1": -22.115, "v2": 34.797, "v3": -35.963, "v4": 22.920, "amplitude": 36.824, "phase_angle": 19.099, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.004, "origin": [ 171.408, 163.843, 203.551 ], "x_axis": [ 0.554, -0.831, -0.052 ], "y_axis": [ 0.833, 0.551, 0.052 ], "z_axis": [ -0.014, -0.072, 0.997 ], "quaternion": [ 0.881, 0.035, 0.011, -0.472 ] } }, { "index": 793, "index_chain": 793, "chain_name": "A", "nt_resnum": 795, "nt_name": "G", "nt_code": "G", "nt_id": "///A/795", "linked_nts": [ "///A/794", "///A/796" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart", "alpha": 149.701, "beta": -179.628, "gamma": 164.619, "delta": 82.705, "epsilon": -102.549, "zeta": -63.742, "epsilon_zeta": -38.808, "bb_type": "--", "chi": -117.785, "glyco_bond": "anti", "C5prime_xyz": [ -2.003, 8.410, -1.856 ], "P_xyz": [ -1.721, 8.757, -4.431 ], "form": ".", "ssZp": 1.519, "Dp": 4.546, "splay_angle": 45.760, "splay_distance": 7.629, "splay_ratio": 0.394, "d22": null, "d64": null, "eta": -179.507, "theta": -101.536, "eta_prime": -155.989, "theta_prime": -140.153, "eta_base": -132.423, "theta_base": -178.032, "v0": -2.468, "v1": -19.841, "v2": 33.142, "v3": -35.505, "v4": 23.987, "amplitude": 35.856, "phase_angle": 22.438, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 184.397, 174.831, 207.196 ], "x_axis": [ -0.288, 0.932, 0.218 ], "y_axis": [ -0.730, -0.362, 0.580 ], "z_axis": [ 0.619, 0.008, 0.785 ], "quaternion": [ 0.533, 0.268, 0.188, 0.780 ] } }, { "index": 794, "index_chain": 794, "chain_name": "A", "nt_resnum": 796, "nt_name": "A", "nt_code": "A", "nt_id": "///A/796", "linked_nts": [ "///A/795", "///A/797" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor", "alpha": 177.985, "beta": 168.606, "gamma": 54.836, "delta": 78.501, "epsilon": -119.549, "zeta": -75.060, "epsilon_zeta": -44.490, "bb_type": "--", "chi": 166.306, "glyco_bond": "anti", "C5prime_xyz": [ -1.842, 8.046, 2.316 ], "P_xyz": [ 0.538, 8.327, 3.331 ], "form": ".", "ssZp": 4.732, "Dp": 4.761, "splay_angle": 30.043, "splay_distance": 4.696, "splay_ratio": 0.266, "d22": null, "d64": null, "eta": 29.554, "theta": -127.312, "eta_prime": 69.554, "theta_prime": -122.881, "eta_base": 68.819, "theta_base": -84.968, "v0": 1.654, "v1": -25.102, "v2": 37.676, "v3": -37.746, "v4": 22.766, "amplitude": 39.240, "phase_angle": 16.231, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.248, "filter_rmsd": 0.040, "frame": { "rmsd": 0.006, "origin": [ 186.464, 173.609, 214.438 ], "x_axis": [ 0.389, -0.831, -0.399 ], "y_axis": [ -0.800, -0.519, 0.301 ], "z_axis": [ -0.457, 0.202, -0.866 ], "quaternion": [ 0.030, 0.833, -0.490, -0.257 ] } }, { "index": 795, "index_chain": 795, "chain_name": "A", "nt_resnum": 797, "nt_name": "A", "nt_code": "A", "nt_id": "///A/797", "linked_nts": [ "///A/796", "///A/798" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart", "alpha": -79.598, "beta": 167.000, "gamma": 75.846, "delta": 81.779, "epsilon": -128.260, "zeta": -110.009, "epsilon_zeta": -18.251, "bb_type": "--", "chi": -174.105, "glyco_bond": "anti", "C5prime_xyz": [ -1.730, 8.587, 1.303 ], "P_xyz": [ 0.803, 9.251, 1.299 ], "form": ".", "ssZp": 4.575, "Dp": 4.634, "splay_angle": 129.104, "splay_distance": 16.315, "splay_ratio": 0.903, "d22": null, "d64": null, "eta": 167.372, "theta": -125.431, "eta_prime": -173.146, "theta_prime": -142.462, "eta_base": -118.283, "theta_base": -160.532, "v0": -1.028, "v1": -21.389, "v2": 34.268, "v3": -35.833, "v4": 23.272, "amplitude": 36.507, "phase_angle": 20.171, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.169, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 186.729, 172.979, 209.792 ], "x_axis": [ -0.325, -0.945, -0.041 ], "y_axis": [ -0.809, 0.255, 0.529 ], "z_axis": [ -0.489, 0.205, -0.848 ], "quaternion": [ -0.144, -0.563, 0.779, 0.236 ] } }, { "index": 796, "index_chain": 796, "chain_name": "A", "nt_resnum": 798, "nt_name": "A", "nt_code": "A", "nt_id": "///A/798", "linked_nts": [ "///A/797", "///A/799" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 82.196, "beta": 145.340, "gamma": 66.054, "delta": 81.625, "epsilon": -92.528, "zeta": 121.256, "epsilon_zeta": 146.217, "bb_type": "--", "chi": 173.499, "glyco_bond": "anti", "C5prime_xyz": [ -1.943, 8.341, 1.929 ], "P_xyz": [ 0.615, 8.866, 2.119 ], "form": ".", "ssZp": 4.508, "Dp": 4.537, "splay_angle": 106.573, "splay_distance": 14.353, "splay_ratio": 0.802, "d22": null, "d64": null, "eta": -54.280, "theta": 87.525, "eta_prime": -40.336, "theta_prime": 113.774, "eta_base": -39.414, "theta_base": 120.286, "v0": -2.018, "v1": -20.639, "v2": 34.032, "v3": -36.114, "v4": 24.076, "amplitude": 36.614, "phase_angle": 21.648, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7d", "suiteness": 0.508, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 178.215, 185.307, 203.332 ], "x_axis": [ -0.837, 0.169, 0.520 ], "y_axis": [ 0.149, -0.845, 0.514 ], "z_axis": [ 0.526, 0.508, 0.682 ], "quaternion": [ 0.006, 0.285, 0.279, 0.917 ] } }, { "index": 797, "index_chain": 797, "chain_name": "A", "nt_resnum": 799, "nt_name": "A", "nt_code": "A", "nt_id": "///A/799", "linked_nts": [ "///A/798", "///A/800" ], "nt_type": "RNA", "dbn": "A", "summary": "pseudoknotted,anti,~C2'-endo,isolated-canonical,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -165.684, "beta": -149.707, "gamma": 101.604, "delta": 147.964, "epsilon": -135.786, "zeta": 109.800, "epsilon_zeta": 114.414, "bb_type": "--", "chi": -116.666, "glyco_bond": "anti", "C5prime_xyz": [ -1.967, 8.434, -1.357 ], "P_xyz": [ 0.647, 8.656, -1.260 ], "form": ".", "ssZp": 1.734, "Dp": 1.712, "splay_angle": 76.474, "splay_distance": 11.808, "splay_ratio": 0.620, "d22": null, "d64": null, "eta": -173.156, "theta": 113.513, "eta_prime": -164.033, "theta_prime": 88.440, "eta_base": 165.309, "theta_base": 114.561, "v0": -21.536, "v1": 35.882, "v2": -35.698, "v3": 24.153, "v4": -1.825, "amplitude": 37.131, "phase_angle": 164.031, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.007, "origin": [ 189.971, 177.217, 201.791 ], "x_axis": [ -0.536, 0.515, -0.669 ], "y_axis": [ -0.432, 0.514, 0.741 ], "z_axis": [ 0.725, 0.686, -0.053 ], "quaternion": [ 0.481, 0.029, 0.725, 0.492 ] } }, { "index": 798, "index_chain": 798, "chain_name": "A", "nt_resnum": 800, "nt_name": "G", "nt_code": "G", "nt_id": "///A/800", "linked_nts": [ "///A/799", "///A/801" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor", "alpha": -66.660, "beta": 149.719, "gamma": 39.359, "delta": 79.787, "epsilon": -153.088, "zeta": -75.816, "epsilon_zeta": -77.272, "bb_type": "BI", "chi": -167.242, "glyco_bond": "anti", "C5prime_xyz": [ -1.514, 8.743, 0.926 ], "P_xyz": [ 1.053, 9.016, 1.308 ], "form": "A", "ssZp": 4.508, "Dp": 4.570, "splay_angle": 22.845, "splay_distance": 3.599, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 174.088, "theta": -148.405, "eta_prime": 177.815, "theta_prime": -148.703, "eta_base": -176.838, "theta_base": -125.879, "v0": -0.332, "v1": -22.573, "v2": 35.622, "v3": -36.788, "v4": 23.427, "amplitude": 37.698, "phase_angle": 19.105, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.395, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 190.900, 170.395, 211.384 ], "x_axis": [ 0.618, 0.117, -0.777 ], "y_axis": [ -0.190, 0.982, -0.004 ], "z_axis": [ 0.762, 0.150, 0.629 ], "quaternion": [ 0.899, -0.043, 0.428, 0.085 ] } }, { "index": 799, "index_chain": 799, "chain_name": "A", "nt_resnum": 801, "nt_name": "U", "nt_code": "U", "nt_id": "///A/801", "linked_nts": [ "///A/800", "///A/802" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.721, "beta": 165.667, "gamma": 61.853, "delta": 82.288, "epsilon": -155.784, "zeta": -67.583, "epsilon_zeta": -88.202, "bb_type": "BI", "chi": -166.938, "glyco_bond": "anti", "C5prime_xyz": [ -1.423, 8.691, 0.923 ], "P_xyz": [ 1.155, 9.113, 1.064 ], "form": "A", "ssZp": 4.428, "Dp": 4.494, "splay_angle": 22.487, "splay_distance": 3.541, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 173.174, "theta": -143.679, "eta_prime": -172.432, "theta_prime": -144.077, "eta_base": -134.174, "theta_base": -118.947, "v0": -0.452, "v1": -21.277, "v2": 33.653, "v3": -34.881, "v4": 22.320, "amplitude": 35.668, "phase_angle": 19.352, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.846, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 193.881, 169.340, 213.102 ], "x_axis": [ 0.451, 0.600, -0.661 ], "y_axis": [ -0.458, 0.791, 0.406 ], "z_axis": [ 0.766, 0.120, 0.631 ], "quaternion": [ 0.847, 0.084, 0.421, 0.312 ] } }, { "index": 800, "index_chain": 800, "chain_name": "A", "nt_resnum": 802, "nt_name": "G", "nt_code": "G", "nt_id": "///A/802", "linked_nts": [ "///A/801", "///A/803" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -79.189, "beta": -165.539, "gamma": 47.829, "delta": 86.788, "epsilon": -149.799, "zeta": -77.078, "epsilon_zeta": -72.721, "bb_type": "BI", "chi": -159.130, "glyco_bond": "anti", "C5prime_xyz": [ -1.186, 8.698, 0.564 ], "P_xyz": [ 1.181, 8.985, 1.650 ], "form": "A", "ssZp": 4.235, "Dp": 4.474, "splay_angle": 20.049, "splay_distance": 3.235, "splay_ratio": 0.174, "d22": null, "d64": null, "eta": 166.311, "theta": -146.146, "eta_prime": 176.363, "theta_prime": -143.332, "eta_base": -146.756, "theta_base": -120.989, "v0": 2.056, "v1": -21.474, "v2": 31.597, "v3": -31.315, "v4": 18.505, "amplitude": 32.731, "phase_angle": 15.129, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.656, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 197.245, 169.103, 214.180 ], "x_axis": [ -0.227, 0.843, -0.488 ], "y_axis": [ -0.628, 0.256, 0.735 ], "z_axis": [ 0.745, 0.473, 0.471 ], "quaternion": [ 0.612, 0.107, 0.503, 0.600 ] } }, { "index": 801, "index_chain": 801, "chain_name": "A", "nt_resnum": 803, "nt_name": "C", "nt_code": "C", "nt_id": "///A/803", "linked_nts": [ "///A/802", "///A/804" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -59.747, "beta": 170.736, "gamma": 45.733, "delta": 82.163, "epsilon": -163.215, "zeta": -81.331, "epsilon_zeta": -81.884, "bb_type": "BI", "chi": -152.944, "glyco_bond": "anti", "C5prime_xyz": [ -1.350, 8.818, 0.109 ], "P_xyz": [ 1.213, 9.254, 0.375 ], "form": "A", "ssZp": 4.169, "Dp": 4.454, "splay_angle": 22.683, "splay_distance": 3.916, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 163.561, "theta": -128.735, "eta_prime": 177.936, "theta_prime": -139.182, "eta_base": -147.197, "theta_base": -121.722, "v0": 0.131, "v1": -21.778, "v2": 33.942, "v3": -34.828, "v4": 21.895, "amplitude": 35.778, "phase_angle": 18.431, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.826, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 200.195, 170.299, 214.754 ], "x_axis": [ -0.577, 0.810, -0.103 ], "y_axis": [ -0.359, -0.138, 0.923 ], "z_axis": [ 0.734, 0.569, 0.371 ], "quaternion": [ 0.405, 0.218, 0.517, 0.722 ] } }, { "index": 802, "index_chain": 802, "chain_name": "A", "nt_resnum": 804, "nt_name": "G", "nt_code": "G", "nt_id": "///A/804", "linked_nts": [ "///A/803", "///A/805" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge", "alpha": 142.561, "beta": -150.701, "gamma": 179.745, "delta": 79.900, "epsilon": -131.001, "zeta": -57.232, "epsilon_zeta": -73.769, "bb_type": "BI", "chi": -179.944, "glyco_bond": "anti", "C5prime_xyz": [ -1.351, 8.345, 1.644 ], "P_xyz": [ 0.126, 10.133, 0.422 ], "form": ".", "ssZp": 4.816, "Dp": 4.804, "splay_angle": 40.233, "splay_distance": 6.254, "splay_ratio": 0.351, "d22": null, "d64": null, "eta": 159.949, "theta": -141.227, "eta_prime": 175.831, "theta_prime": -137.166, "eta_base": -144.040, "theta_base": -102.305, "v0": 6.381, "v1": -29.047, "v2": 39.479, "v3": -36.822, "v4": 19.196, "amplitude": 40.041, "phase_angle": 9.618, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.764, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 202.679, 173.299, 214.339 ], "x_axis": [ -0.690, 0.669, 0.276 ], "y_axis": [ -0.064, -0.437, 0.897 ], "z_axis": [ 0.721, 0.601, 0.344 ], "quaternion": [ 0.233, 0.317, 0.477, 0.786 ] } }, { "index": 803, "index_chain": 803, "chain_name": "A", "nt_resnum": 805, "nt_name": "G", "nt_code": "G", "nt_id": "///A/805", "linked_nts": [ "///A/804", "///A/806" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge", "alpha": -66.448, "beta": -177.125, "gamma": 61.835, "delta": 78.020, "epsilon": -150.910, "zeta": -73.162, "epsilon_zeta": -77.748, "bb_type": "BI", "chi": -173.710, "glyco_bond": "anti", "C5prime_xyz": [ -1.673, 8.689, 1.271 ], "P_xyz": [ 0.785, 9.345, 1.895 ], "form": "A", "ssZp": 4.614, "Dp": 4.613, "splay_angle": 24.460, "splay_distance": 3.874, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 172.450, "theta": -151.228, "eta_prime": -163.444, "theta_prime": -147.814, "eta_base": -106.806, "theta_base": -123.107, "v0": -0.698, "v1": -23.100, "v2": 36.730, "v3": -38.113, "v4": 24.468, "amplitude": 38.981, "phase_angle": 19.567, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.684, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 203.140, 179.051, 216.751 ], "x_axis": [ -0.546, -0.000, 0.838 ], "y_axis": [ 0.386, -0.888, 0.251 ], "z_axis": [ 0.744, 0.460, 0.485 ], "quaternion": [ -0.113, 0.463, 0.208, 0.854 ] } }, { "index": 804, "index_chain": 804, "chain_name": "A", "nt_resnum": 806, "nt_name": "G", "nt_code": "G", "nt_id": "///A/806", "linked_nts": [ "///A/805", "///A/807" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -75.744, "beta": -171.815, "gamma": 54.886, "delta": 84.521, "epsilon": -153.882, "zeta": -71.724, "epsilon_zeta": -82.158, "bb_type": "BI", "chi": -166.815, "glyco_bond": "anti", "C5prime_xyz": [ -1.471, 8.697, 0.938 ], "P_xyz": [ 0.945, 9.120, 1.854 ], "form": "A", "ssZp": 4.376, "Dp": 4.465, "splay_angle": 20.185, "splay_distance": 3.268, "splay_ratio": 0.177, "d22": null, "d64": null, "eta": 169.738, "theta": -146.757, "eta_prime": 178.748, "theta_prime": -145.521, "eta_base": -147.639, "theta_base": -122.649, "v0": 0.022, "v1": -20.671, "v2": 32.180, "v3": -33.099, "v4": 20.906, "amplitude": 33.952, "phase_angle": 18.591, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.817, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 204.480, 182.310, 218.359 ], "x_axis": [ -0.451, -0.625, 0.638 ], "y_axis": [ 0.619, -0.734, -0.281 ], "z_axis": [ 0.643, 0.268, 0.717 ], "quaternion": [ -0.365, 0.376, -0.004, 0.852 ] } }, { "index": 805, "index_chain": 805, "chain_name": "A", "nt_resnum": 807, "nt_name": "G", "nt_code": "G", "nt_id": "///A/807", "linked_nts": [ "///A/806", "///A/808" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -73.015, "beta": 176.245, "gamma": 56.507, "delta": 81.812, "epsilon": -135.954, "zeta": -70.442, "epsilon_zeta": -65.512, "bb_type": "BI", "chi": -157.698, "glyco_bond": "anti", "C5prime_xyz": [ -1.399, 8.861, 0.367 ], "P_xyz": [ 1.152, 9.380, 0.598 ], "form": ".", "ssZp": 4.237, "Dp": 4.598, "splay_angle": 36.696, "splay_distance": 5.739, "splay_ratio": 0.316, "d22": null, "d64": null, "eta": 168.827, "theta": -131.165, "eta_prime": 179.776, "theta_prime": -123.769, "eta_base": -146.784, "theta_base": -78.030, "v0": -1.287, "v1": -20.842, "v2": 33.720, "v3": -35.392, "v4": 23.158, "amplitude": 36.022, "phase_angle": 20.594, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.912, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 205.232, 184.134, 220.965 ], "x_axis": [ -0.075, -0.926, 0.371 ], "y_axis": [ 0.826, -0.266, -0.496 ], "z_axis": [ 0.558, 0.269, 0.785 ], "quaternion": [ 0.601, -0.319, 0.078, -0.729 ] } }, { "index": 806, "index_chain": 806, "chain_name": "A", "nt_resnum": 808, "nt_name": "A", "nt_code": "A", "nt_id": "///A/808", "linked_nts": [ "///A/807", "///A/809" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,junction-loop,splayed-apart", "alpha": -57.791, "beta": 156.418, "gamma": 65.863, "delta": 84.120, "epsilon": -110.827, "zeta": 134.541, "epsilon_zeta": 114.632, "bb_type": "BII", "chi": -152.599, "glyco_bond": "anti", "C5prime_xyz": [ -1.230, 8.627, 0.079 ], "P_xyz": [ 1.260, 8.669, -0.752 ], "form": ".", "ssZp": 3.877, "Dp": 4.765, "splay_angle": 128.905, "splay_distance": 18.093, "splay_ratio": 0.903, "d22": null, "d64": null, "eta": -179.759, "theta": 109.674, "eta_prime": -155.813, "theta_prime": 117.903, "eta_base": -97.097, "theta_base": 149.657, "v0": 5.147, "v1": -25.959, "v2": 35.743, "v3": -33.747, "v4": 18.077, "amplitude": 36.372, "phase_angle": 10.665, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.632, "filter_rmsd": 0.038, "frame": { "rmsd": 0.014, "origin": [ 208.759, 181.415, 224.584 ], "x_axis": [ 0.685, -0.719, -0.118 ], "y_axis": [ 0.578, 0.634, -0.514 ], "z_axis": [ 0.444, 0.284, 0.850 ], "quaternion": [ 0.890, -0.224, 0.158, -0.364 ] } }, { "index": 807, "index_chain": 807, "chain_name": "A", "nt_resnum": 809, "nt_name": "U", "nt_code": "U", "nt_id": "///A/809", "linked_nts": [ "///A/808", "///A/810" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor,splayed-apart", "alpha": 44.143, "beta": 174.480, "gamma": -45.970, "delta": 151.408, "epsilon": -102.966, "zeta": 112.083, "epsilon_zeta": 144.950, "bb_type": "--", "chi": -137.276, "glyco_bond": "anti", "C5prime_xyz": [ -1.324, 8.514, -0.186 ], "P_xyz": [ -0.294, 10.546, 1.080 ], "form": ".", "ssZp": 1.107, "Dp": 1.167, "splay_angle": 34.511, "splay_distance": 5.786, "splay_ratio": 0.304, "d22": null, "d64": null, "eta": -106.923, "theta": 122.141, "eta_prime": -120.686, "theta_prime": 92.111, "eta_base": -168.584, "theta_base": 59.792, "v0": -14.779, "v1": 31.332, "v2": -34.949, "v3": 27.323, "v4": -8.066, "amplitude": 35.122, "phase_angle": 174.308, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.008, "origin": [ 212.043, 198.894, 227.907 ], "x_axis": [ -0.701, -0.366, 0.612 ], "y_axis": [ 0.085, -0.895, -0.437 ], "z_axis": [ 0.708, -0.254, 0.659 ], "quaternion": [ -0.125, 0.366, -0.192, 0.902 ] } }, { "index": 808, "index_chain": 808, "chain_name": "A", "nt_resnum": 810, "nt_name": "G", "nt_code": "G", "nt_id": "///A/810", "linked_nts": [ "///A/809", "///A/811" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,bulge,junction-loop,cap-acceptor,splayed-apart", "alpha": 49.284, "beta": -138.877, "gamma": -170.488, "delta": 82.304, "epsilon": -131.311, "zeta": -100.908, "epsilon_zeta": -30.403, "bb_type": "--", "chi": -94.775, "glyco_bond": "anti", "C5prime_xyz": [ -2.253, 7.525, -2.861 ], "P_xyz": [ -2.761, 6.570, -5.250 ], "form": ".", "ssZp": 0.232, "Dp": 4.680, "splay_angle": 129.011, "splay_distance": 18.872, "splay_ratio": 0.903, "d22": null, "d64": null, "eta": 145.343, "theta": 168.129, "eta_prime": 129.165, "theta_prime": 142.805, "eta_base": 113.513, "theta_base": 124.019, "v0": 1.579, "v1": -23.430, "v2": 35.107, "v3": -35.149, "v4": 21.210, "amplitude": 36.555, "phase_angle": 16.180, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6n", "suiteness": 0.269, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 209.417, 196.017, 223.628 ], "x_axis": [ 0.071, 0.944, 0.323 ], "y_axis": [ 0.690, 0.187, -0.699 ], "z_axis": [ -0.720, 0.272, -0.638 ], "quaternion": [ -0.394, 0.617, 0.662, -0.161 ] } }, { "index": 809, "index_chain": 809, "chain_name": "A", "nt_resnum": 811, "nt_name": "A", "nt_code": "A", "nt_id": "///A/811", "linked_nts": [ "///A/810", "///A/812" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,bulge,splayed-apart", "alpha": -96.026, "beta": 157.723, "gamma": -58.668, "delta": 146.971, "epsilon": -103.556, "zeta": -100.949, "epsilon_zeta": -2.607, "bb_type": "--", "chi": -89.053, "glyco_bond": "anti", "C5prime_xyz": [ -2.710, 7.647, -2.458 ], "P_xyz": [ -2.163, 10.088, -3.223 ], "form": ".", "ssZp": 0.945, "Dp": 1.172, "splay_angle": 160.719, "splay_distance": 19.438, "splay_ratio": 0.986, "d22": null, "d64": null, "eta": 50.951, "theta": -74.000, "eta_prime": 49.018, "theta_prime": -82.279, "eta_base": 29.367, "theta_base": -90.433, "v0": -21.831, "v1": 35.679, "v2": -35.001, "v3": 23.311, "v4": -1.146, "amplitude": 36.612, "phase_angle": 162.942, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.012, "origin": [ 214.869, 194.935, 205.594 ], "x_axis": [ 0.564, -0.818, -0.111 ], "y_axis": [ -0.020, -0.148, 0.989 ], "z_axis": [ -0.825, -0.556, -0.100 ], "quaternion": [ 0.574, 0.673, -0.311, -0.348 ] } }, { "index": 810, "index_chain": 810, "chain_name": "A", "nt_resnum": 812, "nt_name": "G", "nt_code": "G", "nt_id": "///A/812", "linked_nts": [ "///A/811", "///A/813" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,bulge,splayed-apart", "alpha": 43.572, "beta": 147.479, "gamma": 42.908, "delta": 77.999, "epsilon": -158.147, "zeta": -72.648, "epsilon_zeta": -85.499, "bb_type": "BI", "chi": -173.868, "glyco_bond": "anti", "C5prime_xyz": [ -1.745, 8.775, 1.234 ], "P_xyz": [ 0.776, 9.261, 1.794 ], "form": "A", "ssZp": 4.469, "Dp": 4.479, "splay_angle": 25.020, "splay_distance": 3.976, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": -135.241, "theta": -151.422, "eta_prime": -90.525, "theta_prime": -151.497, "eta_base": -53.216, "theta_base": -129.287, "v0": -3.980, "v1": -19.614, "v2": 34.279, "v3": -37.534, "v4": 26.223, "amplitude": 37.677, "phase_angle": 24.519, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "8d", "suiteness": 0.319, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 206.504, 197.230, 222.989 ], "x_axis": [ 0.362, 0.920, 0.147 ], "y_axis": [ 0.570, -0.094, -0.816 ], "z_axis": [ -0.738, 0.380, -0.558 ], "quaternion": [ -0.421, 0.710, 0.525, -0.208 ] } }, { "index": 811, "index_chain": 811, "chain_name": "A", "nt_resnum": 813, "nt_name": "G", "nt_code": "G", "nt_id": "///A/813", "linked_nts": [ "///A/812", "///A/814" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -67.083, "beta": 175.479, "gamma": 58.117, "delta": 82.207, "epsilon": -145.360, "zeta": -63.651, "epsilon_zeta": -81.709, "bb_type": "BI", "chi": -171.114, "glyco_bond": "anti", "C5prime_xyz": [ -1.637, 8.689, 1.164 ], "P_xyz": [ 0.854, 9.170, 1.815 ], "form": "A", "ssZp": 4.482, "Dp": 4.548, "splay_angle": 22.997, "splay_distance": 3.658, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 174.176, "theta": -133.082, "eta_prime": -174.687, "theta_prime": -131.862, "eta_base": -139.874, "theta_base": -84.162, "v0": -0.511, "v1": -21.582, "v2": 34.159, "v3": -35.403, "v4": 22.664, "amplitude": 36.212, "phase_angle": 19.387, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.893, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 202.808, 198.681, 222.799 ], "x_axis": [ 0.596, 0.756, -0.273 ], "y_axis": [ 0.376, -0.562, -0.737 ], "z_axis": [ -0.710, 0.336, -0.619 ], "quaternion": [ -0.322, 0.833, 0.340, -0.295 ] } }, { "index": 812, "index_chain": 812, "chain_name": "A", "nt_resnum": 814, "nt_name": "U", "nt_code": "U", "nt_id": "///A/814", "linked_nts": [ "///A/813", "///A/815" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -72.595, "beta": 169.618, "gamma": 58.808, "delta": 81.548, "epsilon": -163.780, "zeta": -79.312, "epsilon_zeta": -84.468, "bb_type": "BI", "chi": -163.167, "glyco_bond": "anti", "C5prime_xyz": [ -1.525, 8.734, 0.694 ], "P_xyz": [ 1.040, 9.236, 0.832 ], "form": ".", "ssZp": 4.392, "Dp": 4.472, "splay_angle": 33.975, "splay_distance": 5.428, "splay_ratio": 0.295, "d22": null, "d64": null, "eta": 158.732, "theta": -161.759, "eta_prime": -177.848, "theta_prime": -163.816, "eta_base": -108.265, "theta_base": -157.151, "v0": -0.060, "v1": -22.293, "v2": 34.864, "v3": -35.851, "v4": 22.666, "amplitude": 36.803, "phase_angle": 18.683, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.892, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 201.974, 201.508, 220.634 ], "x_axis": [ 0.694, 0.104, -0.712 ], "y_axis": [ -0.234, -0.903, -0.360 ], "z_axis": [ -0.681, 0.417, -0.602 ], "quaternion": [ -0.217, 0.894, -0.037, -0.389 ] } }, { "index": 813, "index_chain": 813, "chain_name": "A", "nt_resnum": 815, "nt_name": "G", "nt_code": "G", "nt_id": "///A/815", "linked_nts": [ "///A/814", "///A/816" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -66.211, "beta": 179.748, "gamma": 58.877, "delta": 79.803, "epsilon": -149.671, "zeta": -69.343, "epsilon_zeta": -80.328, "bb_type": "BI", "chi": -173.945, "glyco_bond": "anti", "C5prime_xyz": [ -1.750, 8.701, 1.274 ], "P_xyz": [ 0.660, 9.351, 2.050 ], "form": "A", "ssZp": 4.517, "Dp": 4.533, "splay_angle": 25.429, "splay_distance": 4.001, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 178.816, "theta": -144.872, "eta_prime": -177.770, "theta_prime": -142.228, "eta_base": -164.341, "theta_base": -106.289, "v0": -2.979, "v1": -20.171, "v2": 34.291, "v3": -36.959, "v4": 25.211, "amplitude": 37.276, "phase_angle": 23.083, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.796, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 198.268, 205.474, 220.554 ], "x_axis": [ 0.728, -0.149, -0.670 ], "y_axis": [ -0.260, -0.963, -0.068 ], "z_axis": [ -0.635, 0.223, -0.740 ], "quaternion": [ -0.079, 0.926, -0.110, -0.352 ] } }, { "index": 814, "index_chain": 814, "chain_name": "A", "nt_resnum": 816, "nt_name": "U", "nt_code": "U", "nt_id": "///A/816", "linked_nts": [ "///A/815", "///A/817" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor", "alpha": -67.719, "beta": 176.796, "gamma": 53.462, "delta": 81.136, "epsilon": -151.065, "zeta": -66.364, "epsilon_zeta": -84.701, "bb_type": "BI", "chi": -167.485, "glyco_bond": "anti", "C5prime_xyz": [ -1.444, 8.646, 0.963 ], "P_xyz": [ 1.082, 9.097, 1.469 ], "form": "A", "ssZp": 4.541, "Dp": 4.607, "splay_angle": 21.201, "splay_distance": 3.446, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": 166.780, "theta": -141.794, "eta_prime": -178.103, "theta_prime": -141.442, "eta_base": -127.156, "theta_base": -114.589, "v0": 1.889, "v1": -24.333, "v2": 36.223, "v3": -36.103, "v4": 21.579, "amplitude": 37.638, "phase_angle": 15.759, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.984, "filter_rmsd": 0.101, "frame": { "rmsd": 0.009, "origin": [ 197.255, 207.287, 217.133 ], "x_axis": [ 0.415, -0.740, -0.529 ], "y_axis": [ -0.632, -0.653, 0.418 ], "z_axis": [ -0.654, 0.161, -0.739 ], "quaternion": [ 0.077, 0.838, -0.409, -0.353 ] } }, { "index": 815, "index_chain": 815, "chain_name": "A", "nt_resnum": 817, "nt_name": "G", "nt_code": "G", "nt_id": "///A/817", "linked_nts": [ "///A/816", "///A/818" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,A-minor", "alpha": -73.674, "beta": -175.537, "gamma": 49.849, "delta": 79.023, "epsilon": 155.262, "zeta": 30.531, "epsilon_zeta": 124.731, "bb_type": "--", "chi": -161.730, "glyco_bond": "anti", "C5prime_xyz": [ -1.385, 8.794, 0.631 ], "P_xyz": [ 1.074, 9.367, 1.293 ], "form": ".", "ssZp": 4.025, "Dp": 4.069, "splay_angle": 24.709, "splay_distance": 4.451, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": 163.225, "theta": -109.310, "eta_prime": -178.841, "theta_prime": -130.114, "eta_base": -134.819, "theta_base": -111.449, "v0": 0.904, "v1": -23.671, "v2": 36.093, "v3": -36.567, "v4": 22.546, "amplitude": 37.798, "phase_angle": 17.272, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.884, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 196.881, 207.974, 213.778 ], "x_axis": [ 0.125, -0.992, 0.031 ], "y_axis": [ -0.805, -0.084, 0.587 ], "z_axis": [ -0.579, -0.098, -0.809 ], "quaternion": [ 0.241, 0.710, -0.632, -0.193 ] } }, { "index": 816, "index_chain": 816, "chain_name": "A", "nt_resnum": 818, "nt_name": "G", "nt_code": "G", "nt_id": "///A/818", "linked_nts": [ "///A/817", "///A/819" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -179.612, "beta": 105.210, "gamma": 154.950, "delta": 82.797, "epsilon": -129.270, "zeta": -79.908, "epsilon_zeta": -49.362, "bb_type": "BI", "chi": 167.492, "glyco_bond": "anti", "C5prime_xyz": [ -1.472, 8.051, 2.327 ], "P_xyz": [ -0.756, 10.384, 1.385 ], "form": "A", "ssZp": 4.598, "Dp": 4.689, "splay_angle": 23.509, "splay_distance": 3.769, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": 163.484, "theta": 174.337, "eta_prime": 176.933, "theta_prime": -170.758, "eta_base": -141.601, "theta_base": -143.654, "v0": 3.372, "v1": -24.289, "v2": 34.867, "v3": -33.894, "v4": 19.276, "amplitude": 35.839, "phase_angle": 13.372, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.017, "frame": { "rmsd": 0.017, "origin": [ 196.815, 206.455, 209.595 ], "x_axis": [ -0.203, -0.908, 0.368 ], "y_axis": [ -0.713, 0.394, 0.580 ], "z_axis": [ -0.672, -0.145, -0.727 ], "quaternion": [ -0.341, -0.532, 0.762, 0.143 ] } }, { "index": 817, "index_chain": 817, "chain_name": "A", "nt_resnum": 819, "nt_name": "G", "nt_code": "G", "nt_id": "///A/819", "linked_nts": [ "///A/818", "///A/820" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -60.328, "beta": 179.399, "gamma": 46.982, "delta": 82.717, "epsilon": -153.956, "zeta": -74.281, "epsilon_zeta": -79.675, "bb_type": "BI", "chi": -157.027, "glyco_bond": "anti", "C5prime_xyz": [ -1.367, 8.792, 0.361 ], "P_xyz": [ 1.130, 9.321, 0.901 ], "form": "A", "ssZp": 4.271, "Dp": 4.514, "splay_angle": 23.779, "splay_distance": 3.842, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 168.033, "theta": -150.334, "eta_prime": -178.355, "theta_prime": -147.957, "eta_base": -147.072, "theta_base": -127.416, "v0": -0.001, "v1": -21.660, "v2": 33.812, "v3": -34.792, "v4": 21.979, "amplitude": 35.685, "phase_angle": 18.645, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.732, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 196.581, 204.881, 206.178 ], "x_axis": [ -0.590, -0.534, 0.605 ], "y_axis": [ -0.530, 0.822, 0.209 ], "z_axis": [ -0.609, -0.198, -0.768 ], "quaternion": [ -0.341, -0.298, 0.892, 0.003 ] } }, { "index": 818, "index_chain": 818, "chain_name": "A", "nt_resnum": 820, "nt_name": "U", "nt_code": "U", "nt_id": "///A/820", "linked_nts": [ "///A/819", "///A/821" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop", "alpha": -62.668, "beta": 170.197, "gamma": 57.851, "delta": 80.899, "epsilon": -112.589, "zeta": -72.873, "epsilon_zeta": -39.716, "bb_type": "--", "chi": -152.043, "glyco_bond": "anti", "C5prime_xyz": [ -1.543, 8.806, 0.016 ], "P_xyz": [ 0.991, 9.395, -0.217 ], "form": ".", "ssZp": 3.791, "Dp": 4.655, "splay_angle": 44.595, "splay_distance": 7.280, "splay_ratio": 0.379, "d22": null, "d64": null, "eta": -178.412, "theta": -121.546, "eta_prime": -169.451, "theta_prime": -110.893, "eta_base": -143.125, "theta_base": -102.475, "v0": -1.417, "v1": -21.305, "v2": 34.600, "v3": -36.384, "v4": 23.860, "amplitude": 37.001, "phase_angle": 20.756, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.944, "filter_rmsd": 0.097, "frame": { "rmsd": 0.011, "origin": [ 194.937, 202.928, 203.307 ], "x_axis": [ -0.781, -0.116, 0.613 ], "y_axis": [ -0.264, 0.952, -0.156 ], "z_axis": [ -0.565, -0.283, -0.775 ], "quaternion": [ -0.315, -0.101, 0.936, -0.117 ] } }, { "index": 819, "index_chain": 819, "chain_name": "A", "nt_resnum": 821, "nt_name": "A", "nt_code": "A", "nt_id": "///A/821", "linked_nts": [ "///A/820", "///A/822" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,junction-loop", "alpha": -55.058, "beta": -142.650, "gamma": 44.182, "delta": 144.434, "epsilon": -131.568, "zeta": -179.395, "epsilon_zeta": 47.827, "bb_type": "BII", "chi": -67.370, "glyco_bond": "--", "C5prime_xyz": [ -3.396, 6.807, -2.973 ], "P_xyz": [ -1.706, 8.527, -3.974 ], "form": ".", "ssZp": 1.007, "Dp": 1.653, "splay_angle": 42.563, "splay_distance": 7.693, "splay_ratio": 0.364, "d22": null, "d64": null, "eta": -162.399, "theta": 176.830, "eta_prime": -142.529, "theta_prime": 153.307, "eta_base": -137.189, "theta_base": 146.820, "v0": -24.688, "v1": 37.248, "v2": -34.847, "v3": 21.519, "v4": 1.793, "amplitude": 37.449, "phase_angle": 158.517, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.513, "filter_rmsd": 0.043, "frame": { "rmsd": 0.013, "origin": [ 188.299, 202.083, 200.440 ], "x_axis": [ -0.533, 0.329, 0.779 ], "y_axis": [ -0.022, 0.916, -0.401 ], "z_axis": [ -0.846, -0.231, -0.481 ], "quaternion": [ -0.475, 0.090, 0.856, -0.185 ] } }, { "index": 820, "index_chain": 820, "chain_name": "A", "nt_resnum": 822, "nt_name": "G", "nt_code": "G", "nt_id": "///A/822", "linked_nts": [ "///A/821", "///A/823" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,junction-loop,phosphate,splayed-apart", "alpha": 31.018, "beta": -143.191, "gamma": -119.253, "delta": 147.827, "epsilon": -141.636, "zeta": 113.363, "epsilon_zeta": 105.001, "bb_type": "--", "chi": -134.918, "glyco_bond": "anti", "C5prime_xyz": [ -1.739, 8.750, -0.400 ], "P_xyz": [ -1.028, 10.651, -2.048 ], "form": ".", "ssZp": 1.910, "Dp": 1.837, "splay_angle": 168.807, "splay_distance": 17.135, "splay_ratio": 0.995, "d22": null, "d64": null, "eta": -170.498, "theta": 86.948, "eta_prime": 165.130, "theta_prime": 99.131, "eta_base": 160.030, "theta_base": 121.094, "v0": -21.960, "v1": 36.592, "v2": -36.297, "v3": 24.517, "v4": -1.747, "amplitude": 37.782, "phase_angle": 163.879, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 188.912, 197.569, 194.241 ], "x_axis": [ -0.354, 0.094, 0.931 ], "y_axis": [ -0.114, 0.983, -0.143 ], "z_axis": [ -0.928, -0.157, -0.337 ], "quaternion": [ 0.568, 0.006, -0.818, 0.092 ] } }, { "index": 821, "index_chain": 821, "chain_name": "A", "nt_resnum": 823, "nt_name": "G", "nt_code": "G", "nt_id": "///A/823", "linked_nts": [ "///A/822", "///A/824" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart", "alpha": 29.471, "beta": 84.485, "gamma": 151.785, "delta": 82.352, "epsilon": -153.850, "zeta": 122.796, "epsilon_zeta": 83.354, "bb_type": "--", "chi": -38.794, "glyco_bond": "syn", "C5prime_xyz": [ -3.701, 4.668, -3.238 ], "P_xyz": [ -6.018, 3.498, -2.900 ], "form": ".", "ssZp": -3.498, "Dp": 4.691, "splay_angle": 119.339, "splay_distance": 15.784, "splay_ratio": 0.863, "d22": null, "d64": null, "eta": -7.527, "theta": -11.259, "eta_prime": -38.206, "theta_prime": 4.970, "eta_base": -49.488, "theta_base": 2.012, "v0": 9.748, "v1": -30.849, "v2": 39.117, "v3": -34.600, "v4": 15.701, "amplitude": 39.243, "phase_angle": 4.608, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 188.974, 208.325, 180.903 ], "x_axis": [ 0.594, 0.662, -0.457 ], "y_axis": [ 0.803, -0.523, 0.286 ], "z_axis": [ -0.050, -0.537, -0.842 ], "quaternion": [ 0.239, 0.860, 0.426, -0.147 ] } }, { "index": 822, "index_chain": 822, "chain_name": "A", "nt_resnum": 824, "nt_name": "G", "nt_code": "G", "nt_id": "///A/824", "linked_nts": [ "///A/823", "///A/825" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,splayed-apart", "alpha": -70.718, "beta": 153.735, "gamma": 30.381, "delta": 82.055, "epsilon": -157.016, "zeta": -72.569, "epsilon_zeta": -84.447, "bb_type": "BI", "chi": -165.776, "glyco_bond": "anti", "C5prime_xyz": [ -1.410, 8.727, 0.893 ], "P_xyz": [ 1.083, 8.930, 1.687 ], "form": "A", "ssZp": 4.422, "Dp": 4.502, "splay_angle": 23.006, "splay_distance": 3.638, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 163.340, "theta": -147.935, "eta_prime": -173.001, "theta_prime": -147.267, "eta_base": -130.322, "theta_base": -124.552, "v0": 1.092, "v1": -22.936, "v2": 34.830, "v3": -35.146, "v4": 21.497, "amplitude": 36.407, "phase_angle": 16.923, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "9a", "suiteness": 0.433, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 192.412, 199.730, 193.688 ], "x_axis": [ 0.075, -0.725, -0.685 ], "y_axis": [ 0.112, 0.689, -0.716 ], "z_axis": [ 0.991, -0.023, 0.132 ], "quaternion": [ 0.688, -0.252, 0.609, -0.304 ] } }, { "index": 823, "index_chain": 823, "chain_name": "A", "nt_resnum": 825, "nt_name": "G", "nt_code": "G", "nt_id": "///A/825", "linked_nts": [ "///A/824", "///A/826" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -63.791, "beta": 171.064, "gamma": 57.976, "delta": 83.069, "epsilon": -168.069, "zeta": -75.476, "epsilon_zeta": -92.593, "bb_type": "BI", "chi": -167.854, "glyco_bond": "anti", "C5prime_xyz": [ -1.454, 8.705, 0.989 ], "P_xyz": [ 1.090, 9.096, 1.457 ], "form": "A", "ssZp": 4.300, "Dp": 4.355, "splay_angle": 23.771, "splay_distance": 3.736, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 170.847, "theta": -130.215, "eta_prime": -173.811, "theta_prime": -134.336, "eta_base": -135.560, "theta_base": -100.433, "v0": -0.781, "v1": -20.620, "v2": 32.900, "v3": -34.276, "v4": 22.131, "amplitude": 34.980, "phase_angle": 19.857, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.919, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 195.452, 198.431, 195.205 ], "x_axis": [ 0.089, -0.285, -0.955 ], "y_axis": [ 0.033, 0.959, -0.283 ], "z_axis": [ 0.995, -0.007, 0.095 ], "quaternion": [ 0.732, -0.094, 0.666, -0.109 ] } }, { "index": 824, "index_chain": 824, "chain_name": "A", "nt_resnum": 826, "nt_name": "U", "nt_code": "U", "nt_id": "///A/826", "linked_nts": [ "///A/825", "///A/827" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate", "alpha": -166.698, "beta": -144.065, "gamma": 125.187, "delta": 80.465, "epsilon": -141.008, "zeta": -70.738, "epsilon_zeta": -70.270, "bb_type": "BI", "chi": -168.179, "glyco_bond": "anti", "C5prime_xyz": [ -1.650, 8.697, 0.976 ], "P_xyz": [ 0.823, 9.179, 0.319 ], "form": ".", "ssZp": 4.492, "Dp": 4.598, "splay_angle": 24.418, "splay_distance": 3.835, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 154.876, "theta": -135.156, "eta_prime": 175.774, "theta_prime": -138.062, "eta_base": -131.194, "theta_base": -93.855, "v0": -1.197, "v1": -21.627, "v2": 34.941, "v3": -36.609, "v4": 23.799, "amplitude": 37.277, "phase_angle": 20.393, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 198.889, 197.191, 194.427 ], "x_axis": [ 0.020, 0.409, -0.912 ], "y_axis": [ 0.042, 0.911, 0.409 ], "z_axis": [ 0.999, -0.046, 0.001 ], "quaternion": [ 0.695, 0.164, 0.688, 0.132 ] } }, { "index": 825, "index_chain": 825, "chain_name": "A", "nt_resnum": 827, "nt_name": "G", "nt_code": "G", "nt_id": "///A/827", "linked_nts": [ "///A/826", "///A/828" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart", "alpha": -64.153, "beta": 163.225, "gamma": 59.680, "delta": 84.858, "epsilon": -83.252, "zeta": -161.640, "epsilon_zeta": 78.388, "bb_type": "BII", "chi": -162.319, "glyco_bond": "anti", "C5prime_xyz": [ -1.517, 8.731, 0.632 ], "P_xyz": [ 1.061, 9.111, 0.552 ], "form": ".", "ssZp": 3.831, "Dp": 4.501, "splay_angle": 155.419, "splay_distance": 18.992, "splay_ratio": 0.977, "d22": null, "d64": null, "eta": -175.403, "theta": -159.875, "eta_prime": -160.492, "theta_prime": 178.207, "eta_base": -102.227, "theta_base": 160.349, "v0": -0.268, "v1": -20.967, "v2": 32.909, "v3": -34.001, "v4": 21.675, "amplitude": 34.816, "phase_angle": 19.051, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.869, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 201.896, 197.970, 192.177 ], "x_axis": [ 0.026, 0.941, -0.336 ], "y_axis": [ 0.124, 0.331, 0.935 ], "z_axis": [ 0.992, -0.066, -0.109 ], "quaternion": [ 0.559, 0.448, 0.594, 0.366 ] } }, { "index": 826, "index_chain": 826, "chain_name": "A", "nt_resnum": 828, "nt_name": "A", "nt_code": "A", "nt_id": "///A/828", "linked_nts": [ "///A/827", "///A/829" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-acceptor,splayed-apart", "alpha": 75.939, "beta": -168.453, "gamma": 50.818, "delta": 81.540, "epsilon": -154.732, "zeta": 170.020, "epsilon_zeta": 35.248, "bb_type": "--", "chi": -149.261, "glyco_bond": "anti", "C5prime_xyz": [ -1.497, 8.780, -0.133 ], "P_xyz": [ 0.960, 9.570, 0.252 ], "form": ".", "ssZp": 4.056, "Dp": 4.514, "splay_angle": 129.369, "splay_distance": 16.831, "splay_ratio": 0.904, "d22": null, "d64": null, "eta": -22.478, "theta": 107.310, "eta_prime": -10.443, "theta_prime": 76.349, "eta_base": -6.898, "theta_base": 20.548, "v0": -0.735, "v1": -21.403, "v2": 34.044, "v3": -35.474, "v4": 22.860, "amplitude": 36.177, "phase_angle": 19.772, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3d", "suiteness": 0.400, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 211.565, 193.605, 207.931 ], "x_axis": [ -0.561, 0.586, 0.585 ], "y_axis": [ -0.435, 0.392, -0.810 ], "z_axis": [ -0.704, -0.710, 0.035 ], "quaternion": [ -0.465, 0.054, 0.692, -0.549 ] } }, { "index": 827, "index_chain": 827, "chain_name": "A", "nt_resnum": 829, "nt_name": "A", "nt_code": "A", "nt_id": "///A/829", "linked_nts": [ "///A/828", "///A/830" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 51.620, "beta": -168.106, "gamma": 161.152, "delta": 150.494, "epsilon": -129.748, "zeta": 133.738, "epsilon_zeta": 96.515, "bb_type": "--", "chi": -119.038, "glyco_bond": "anti", "C5prime_xyz": [ -1.922, 8.472, -1.189 ], "P_xyz": [ 0.095, 8.942, -2.796 ], "form": ".", "ssZp": 1.439, "Dp": 1.474, "splay_angle": 49.086, "splay_distance": 7.617, "splay_ratio": 0.427, "d22": null, "d64": null, "eta": 91.943, "theta": 96.146, "eta_prime": 105.091, "theta_prime": 77.588, "eta_base": 137.744, "theta_base": 40.688, "v0": -20.521, "v1": 36.262, "v2": -37.219, "v3": 26.317, "v4": -3.813, "amplitude": 38.213, "phase_angle": 166.902, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 204.916, 198.193, 193.164 ], "x_axis": [ 0.336, 0.751, 0.569 ], "y_axis": [ 0.466, -0.657, 0.592 ], "z_axis": [ 0.818, 0.066, -0.571 ], "quaternion": [ 0.164, 0.801, 0.380, 0.433 ] } }, { "index": 828, "index_chain": 828, "chain_name": "A", "nt_resnum": 830, "nt_name": "A", "nt_code": "A", "nt_id": "///A/830", "linked_nts": [ "///A/829", "///A/831" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart", "alpha": -72.676, "beta": 150.669, "gamma": -5.341, "delta": 80.709, "epsilon": -157.457, "zeta": -69.465, "epsilon_zeta": -87.992, "bb_type": "BI", "chi": -61.408, "glyco_bond": "--", "C5prime_xyz": [ -3.227, 5.847, -3.448 ], "P_xyz": [ -1.437, 5.740, -5.340 ], "form": ".", "ssZp": -1.908, "Dp": 4.619, "splay_angle": 100.418, "splay_distance": 14.034, "splay_ratio": 0.769, "d22": null, "d64": null, "eta": 132.530, "theta": -115.058, "eta_prime": 122.272, "theta_prime": -126.090, "eta_base": 97.737, "theta_base": -121.610, "v0": 3.934, "v1": -26.329, "v2": 37.504, "v3": -36.241, "v4": 20.377, "amplitude": 38.469, "phase_angle": 12.862, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.014, "origin": [ 202.504, 192.829, 198.004 ], "x_axis": [ -0.113, 0.815, -0.568 ], "y_axis": [ -0.039, -0.575, -0.817 ], "z_axis": [ -0.993, -0.071, 0.097 ], "quaternion": [ 0.320, -0.584, -0.332, 0.668 ] } }, { "index": 829, "index_chain": 829, "chain_name": "A", "nt_resnum": 831, "nt_name": "U", "nt_code": "U", "nt_id": "///A/831", "linked_nts": [ "///A/830", "///A/832" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 134.732, "beta": -128.617, "gamma": -71.573, "delta": 145.103, "epsilon": -157.145, "zeta": 163.007, "epsilon_zeta": 39.848, "bb_type": "--", "chi": 54.730, "glyco_bond": "syn", "C5prime_xyz": [ -5.364, 3.828, 0.898 ], "P_xyz": [ -7.731, 3.368, 1.909 ], "form": ".", "ssZp": -2.136, "Dp": 2.092, "splay_angle": 86.845, "splay_distance": 13.870, "splay_ratio": 0.688, "d22": null, "d64": null, "eta": -62.775, "theta": 104.470, "eta_prime": -51.044, "theta_prime": 98.227, "eta_base": -62.625, "theta_base": 95.481, "v0": -20.569, "v1": 33.624, "v2": -33.104, "v3": 22.114, "v4": -1.149, "amplitude": 34.596, "phase_angle": 163.112, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.004, "origin": [ 200.693, 191.351, 184.166 ], "x_axis": [ -0.453, 0.801, -0.392 ], "y_axis": [ -0.452, 0.172, 0.875 ], "z_axis": [ 0.768, 0.574, 0.284 ], "quaternion": [ 0.501, 0.151, 0.579, 0.625 ] } }, { "index": 830, "index_chain": 830, "chain_name": "A", "nt_resnum": 832, "nt_name": "G", "nt_code": "G", "nt_id": "///A/832", "linked_nts": [ "///A/831", "///A/833" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate,splayed-apart", "alpha": 83.358, "beta": -154.156, "gamma": -170.983, "delta": 81.922, "epsilon": -119.052, "zeta": -95.027, "epsilon_zeta": -24.025, "bb_type": "--", "chi": 178.816, "glyco_bond": "anti", "C5prime_xyz": [ -1.758, 8.440, 1.733 ], "P_xyz": [ -0.293, 10.433, 0.942 ], "form": "A", "ssZp": 4.536, "Dp": 4.610, "splay_angle": 19.571, "splay_distance": 3.112, "splay_ratio": 0.171, "d22": null, "d64": null, "eta": 142.177, "theta": -166.914, "eta_prime": 122.812, "theta_prime": -158.619, "eta_base": 141.323, "theta_base": -111.442, "v0": -0.068, "v1": -22.059, "v2": 34.593, "v3": -35.663, "v4": 22.518, "amplitude": 36.537, "phase_angle": 18.774, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "4n", "suiteness": 0.107, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 199.142, 196.581, 196.918 ], "x_axis": [ 0.139, 0.435, -0.890 ], "y_axis": [ -0.019, -0.897, -0.442 ], "z_axis": [ -0.990, 0.078, -0.116 ], "quaternion": [ -0.177, 0.733, 0.142, -0.641 ] } }, { "index": 831, "index_chain": 831, "chain_name": "A", "nt_resnum": 833, "nt_name": "C", "nt_code": "C", "nt_id": "///A/833", "linked_nts": [ "///A/832", "///A/834" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -36.448, "beta": 147.995, "gamma": 37.581, "delta": 80.327, "epsilon": -140.970, "zeta": -82.843, "epsilon_zeta": -58.127, "bb_type": "BI", "chi": -157.013, "glyco_bond": "anti", "C5prime_xyz": [ -1.564, 8.840, 0.321 ], "P_xyz": [ 1.009, 9.203, 0.492 ], "form": ".", "ssZp": 4.236, "Dp": 4.587, "splay_angle": 28.738, "splay_distance": 4.682, "splay_ratio": 0.249, "d22": 4.974, "d64": 5.198, "eta": 161.888, "theta": -143.774, "eta_prime": 179.063, "theta_prime": -141.835, "eta_base": -123.903, "theta_base": -119.530, "v0": -1.791, "v1": -20.962, "v2": 34.435, "v3": -36.457, "v4": 24.112, "amplitude": 36.969, "phase_angle": 21.337, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.158, "filter_rmsd": 0.059, "frame": { "rmsd": 0.011, "origin": [ 196.708, 198.058, 195.661 ], "x_axis": [ 0.102, -0.279, -0.955 ], "y_axis": [ -0.255, -0.935, 0.246 ], "z_axis": [ -0.961, 0.219, -0.166 ], "quaternion": [ 0.009, 0.742, -0.180, -0.645 ] } }, { "index": 832, "index_chain": 832, "chain_name": "A", "nt_resnum": 834, "nt_name": "C", "nt_code": "C", "nt_id": "///A/834", "linked_nts": [ "///A/833", "///A/835" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,splayed-apart", "alpha": -49.003, "beta": 166.383, "gamma": 51.453, "delta": 78.117, "epsilon": -137.948, "zeta": 137.292, "epsilon_zeta": 84.759, "bb_type": "--", "chi": -148.093, "glyco_bond": "anti", "C5prime_xyz": [ -1.578, 8.877, -0.232 ], "P_xyz": [ 0.919, 9.521, -0.601 ], "form": ".", "ssZp": 3.915, "Dp": 4.653, "splay_angle": 136.713, "splay_distance": 17.276, "splay_ratio": 0.930, "d22": null, "d64": null, "eta": 177.384, "theta": 63.393, "eta_prime": -171.384, "theta_prime": 79.470, "eta_base": -139.739, "theta_base": 127.709, "v0": -1.961, "v1": -21.902, "v2": 36.095, "v3": -38.237, "v4": 25.372, "amplitude": 38.784, "phase_angle": 21.459, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.713, "filter_rmsd": 0.060, "frame": { "rmsd": 0.009, "origin": [ 192.840, 199.620, 193.535 ], "x_axis": [ -0.014, -0.719, -0.695 ], "y_axis": [ -0.317, -0.656, 0.685 ], "z_axis": [ -0.948, 0.230, -0.219 ], "quaternion": [ 0.167, 0.682, -0.379, -0.602 ] } }, { "index": 833, "index_chain": 833, "chain_name": "A", "nt_resnum": 835, "nt_name": "A", "nt_code": "A", "nt_id": "///A/835", "linked_nts": [ "///A/834", "///A/836" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -65.837, "beta": 177.400, "gamma": 62.884, "delta": 147.822, "epsilon": -124.748, "zeta": 151.546, "epsilon_zeta": 83.706, "bb_type": "BII", "chi": -126.398, "glyco_bond": "anti", "C5prime_xyz": [ -1.812, 8.566, -0.858 ], "P_xyz": [ 0.652, 9.165, -0.208 ], "form": ".", "ssZp": 1.487, "Dp": 1.477, "splay_angle": 107.446, "splay_distance": 15.406, "splay_ratio": 0.807, "d22": null, "d64": null, "eta": -135.940, "theta": 122.390, "eta_prime": -120.332, "theta_prime": 127.882, "eta_base": -172.353, "theta_base": 164.702, "v0": -20.818, "v1": 35.399, "v2": -35.632, "v3": 24.528, "v4": -2.541, "amplitude": 36.870, "phase_angle": 165.115, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "3b", "suiteness": 0.289, "filter_rmsd": 0.040, "frame": { "rmsd": 0.013, "origin": [ 182.589, 199.917, 207.438 ], "x_axis": [ 0.235, 0.905, -0.355 ], "y_axis": [ 0.394, -0.423, -0.816 ], "z_axis": [ -0.889, 0.052, -0.456 ], "quaternion": [ -0.299, 0.727, 0.446, -0.428 ] } }, { "index": 834, "index_chain": 834, "chain_name": "A", "nt_resnum": 836, "nt_name": "A", "nt_code": "A", "nt_id": "///A/836", "linked_nts": [ "///A/835", "///A/837" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart", "alpha": -70.543, "beta": -121.421, "gamma": 58.245, "delta": 147.607, "epsilon": -111.977, "zeta": -98.576, "epsilon_zeta": -13.402, "bb_type": "--", "chi": -73.683, "glyco_bond": "anti", "C5prime_xyz": [ -2.946, 7.050, -2.934 ], "P_xyz": [ -0.844, 8.606, -3.054 ], "form": ".", "ssZp": 0.574, "Dp": 1.165, "splay_angle": 94.292, "splay_distance": 14.901, "splay_ratio": 0.733, "d22": null, "d64": null, "eta": -87.602, "theta": -30.766, "eta_prime": -107.358, "theta_prime": -47.689, "eta_base": -149.179, "theta_base": -34.684, "v0": -21.350, "v1": 35.775, "v2": -35.777, "v3": 24.337, "v4": -2.088, "amplitude": 37.141, "phase_angle": 164.421, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4b", "suiteness": 0.010, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 179.886, 184.760, 207.983 ], "x_axis": [ -0.940, 0.339, 0.029 ], "y_axis": [ 0.162, 0.522, -0.837 ], "z_axis": [ -0.299, -0.783, -0.546 ], "quaternion": [ -0.095, 0.144, 0.867, -0.467 ] } }, { "index": 835, "index_chain": 835, "chain_name": "A", "nt_resnum": 837, "nt_name": "U", "nt_code": "U", "nt_id": "///A/837", "linked_nts": [ "///A/836", "///A/838" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart", "alpha": 68.538, "beta": 119.998, "gamma": -39.731, "delta": 133.933, "epsilon": 63.661, "zeta": 90.843, "epsilon_zeta": -27.183, "bb_type": "--", "chi": -80.013, "glyco_bond": "anti", "C5prime_xyz": [ -2.761, 7.238, -2.850 ], "P_xyz": [ -1.425, 9.489, -2.980 ], "form": ".", "ssZp": 1.101, "Dp": 1.162, "splay_angle": 60.763, "splay_distance": 9.843, "splay_ratio": 0.512, "d22": 5.114, "d64": 5.628, "eta": 151.615, "theta": -57.402, "eta_prime": -143.154, "theta_prime": -113.728, "eta_base": -146.149, "theta_base": -98.491, "v0": -19.098, "v1": 28.817, "v2": -27.190, "v3": 16.892, "v4": 1.223, "amplitude": 29.139, "phase_angle": 158.927, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.005, "origin": [ 180.115, 193.766, 196.114 ], "x_axis": [ 0.064, 0.701, 0.710 ], "y_axis": [ 0.832, -0.431, 0.350 ], "z_axis": [ 0.551, 0.568, -0.611 ], "quaternion": [ -0.075, 0.726, 0.528, 0.435 ] } }, { "index": 836, "index_chain": 836, "chain_name": "A", "nt_resnum": 838, "nt_name": "C", "nt_code": "C", "nt_id": "///A/838", "linked_nts": [ "///A/837", "///A/839" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BII,non-stack,isolated-canonical,non-pair-contact,helix,multiplet,internal-loop,junction-loop,splayed-apart", "alpha": 60.128, "beta": 147.748, "gamma": 174.223, "delta": 149.146, "epsilon": -122.113, "zeta": 177.367, "epsilon_zeta": 60.520, "bb_type": "BII", "chi": -138.178, "glyco_bond": "anti", "C5prime_xyz": [ -1.533, 8.729, -0.192 ], "P_xyz": [ -0.148, 10.346, -1.704 ], "form": ".", "ssZp": 1.324, "Dp": 1.351, "splay_angle": 121.850, "splay_distance": 16.680, "splay_ratio": 0.874, "d22": null, "d64": null, "eta": 132.047, "theta": 127.921, "eta_prime": 171.451, "theta_prime": 132.988, "eta_base": -157.297, "theta_base": 176.994, "v0": -20.344, "v1": 35.489, "v2": -36.282, "v3": 25.422, "v4": -3.381, "amplitude": 37.330, "phase_angle": 166.393, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.009, "origin": [ 188.949, 197.776, 194.456 ], "x_axis": [ -0.469, 0.113, 0.876 ], "y_axis": [ -0.141, -0.989, 0.052 ], "z_axis": [ 0.872, -0.099, 0.480 ], "quaternion": [ 0.074, 0.510, -0.014, 0.857 ] } }, { "index": 837, "index_chain": 837, "chain_name": "A", "nt_resnum": 839, "nt_name": "G", "nt_code": "G", "nt_id": "///A/839", "linked_nts": [ "///A/838", "///A/840" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor,splayed-apart", "alpha": 17.284, "beta": 179.860, "gamma": 63.389, "delta": 145.925, "epsilon": -92.866, "zeta": 65.246, "epsilon_zeta": 201.889, "bb_type": "--", "chi": -103.653, "glyco_bond": "anti", "C5prime_xyz": [ -2.041, 8.164, -1.994 ], "P_xyz": [ 0.479, 8.824, -2.118 ], "form": ".", "ssZp": 0.511, "Dp": 0.870, "splay_angle": 32.578, "splay_distance": 5.754, "splay_ratio": 0.328, "d22": null, "d64": null, "eta": -42.671, "theta": 74.515, "eta_prime": -40.119, "theta_prime": 68.907, "eta_base": -74.426, "theta_base": 68.170, "v0": -19.796, "v1": 33.870, "v2": -34.263, "v3": 23.712, "v4": -2.666, "amplitude": 35.392, "phase_angle": 165.492, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 198.825, 188.626, 184.609 ], "x_axis": [ 0.348, -0.737, 0.580 ], "y_axis": [ -0.890, -0.064, 0.452 ], "z_axis": [ -0.296, -0.673, -0.678 ], "quaternion": [ 0.389, 0.723, -0.563, 0.098 ] } }, { "index": 838, "index_chain": 838, "chain_name": "A", "nt_resnum": 840, "nt_name": "A", "nt_code": "A", "nt_id": "///A/840", "linked_nts": [ "///A/839", "///A/841" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-stack,non-canonical,junction-loop,cap-acceptor,splayed-apart", "alpha": -110.556, "beta": -179.828, "gamma": 66.860, "delta": 146.453, "epsilon": -119.857, "zeta": 119.709, "epsilon_zeta": 120.434, "bb_type": "--", "chi": -53.410, "glyco_bond": "--", "C5prime_xyz": [ -3.029, 5.925, -3.289 ], "P_xyz": [ -0.726, 5.588, -4.492 ], "form": ".", "ssZp": -0.581, "Dp": 1.743, "splay_angle": 131.255, "splay_distance": 17.600, "splay_ratio": 0.912, "d22": null, "d64": null, "eta": 171.395, "theta": 144.351, "eta_prime": -158.832, "theta_prime": 133.926, "eta_base": -174.418, "theta_base": 177.246, "v0": -12.538, "v1": 27.300, "v2": -30.874, "v3": 24.413, "v4": -7.661, "amplitude": 30.977, "phase_angle": 175.329, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "0b", "suiteness": 0.011, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 195.806, 192.792, 187.185 ], "x_axis": [ 0.404, 0.100, -0.909 ], "y_axis": [ -0.795, 0.529, -0.295 ], "z_axis": [ 0.452, 0.842, 0.293 ], "quaternion": [ 0.746, -0.381, 0.456, 0.300 ] } }, { "index": 839, "index_chain": 839, "chain_name": "A", "nt_resnum": 841, "nt_name": "A", "nt_code": "A", "nt_id": "///A/841", "linked_nts": [ "///A/840", "///A/842" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,splayed-apart", "alpha": 12.393, "beta": 150.184, "gamma": 20.632, "delta": 82.461, "epsilon": -144.064, "zeta": -69.873, "epsilon_zeta": -74.191, "bb_type": "BI", "chi": -172.171, "glyco_bond": "anti", "C5prime_xyz": [ -1.247, 8.512, 1.249 ], "P_xyz": [ 1.157, 8.458, 2.290 ], "form": "A", "ssZp": 4.618, "Dp": 4.654, "splay_angle": 25.620, "splay_distance": 3.961, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": -114.343, "theta": -135.205, "eta_prime": -130.541, "theta_prime": -130.436, "eta_base": -125.352, "theta_base": -92.337, "v0": 3.036, "v1": -24.452, "v2": 35.378, "v3": -34.600, "v4": 19.958, "amplitude": 36.455, "phase_angle": 13.962, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.043, "frame": { "rmsd": 0.013, "origin": [ 183.307, 202.791, 194.504 ], "x_axis": [ 0.249, 0.619, -0.745 ], "y_axis": [ 0.530, -0.731, -0.430 ], "z_axis": [ -0.811, -0.288, -0.510 ], "quaternion": [ -0.045, 0.789, 0.364, -0.493 ] } }, { "index": 840, "index_chain": 840, "chain_name": "A", "nt_resnum": 842, "nt_name": "C", "nt_code": "C", "nt_id": "///A/842", "linked_nts": [ "///A/841", "///A/843" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -60.150, "beta": 168.622, "gamma": 55.173, "delta": 83.180, "epsilon": -162.490, "zeta": -74.728, "epsilon_zeta": -87.762, "bb_type": "BI", "chi": -165.776, "glyco_bond": "anti", "C5prime_xyz": [ -1.282, 8.677, 0.887 ], "P_xyz": [ 1.296, 8.912, 1.212 ], "form": "A", "ssZp": 4.400, "Dp": 4.468, "splay_angle": 23.301, "splay_distance": 3.846, "splay_ratio": 0.208, "d22": 4.425, "d64": 4.493, "eta": 167.920, "theta": -129.950, "eta_prime": -170.612, "theta_prime": -138.304, "eta_base": -113.719, "theta_base": -119.896, "v0": 1.541, "v1": -22.930, "v2": 34.386, "v3": -34.456, "v4": 20.764, "amplitude": 35.808, "phase_angle": 16.202, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.959, "filter_rmsd": 0.060, "frame": { "rmsd": 0.009, "origin": [ 180.542, 203.549, 191.770 ], "x_axis": [ 0.554, -0.031, -0.832 ], "y_axis": [ 0.222, -0.957, 0.184 ], "z_axis": [ -0.802, -0.287, -0.524 ], "quaternion": [ 0.135, 0.871, 0.055, -0.469 ] } }, { "index": 841, "index_chain": 841, "chain_name": "A", "nt_resnum": 843, "nt_name": "C", "nt_code": "C", "nt_id": "///A/843", "linked_nts": [ "///A/842", "///A/844" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -174.141, "beta": -163.648, "gamma": 144.420, "delta": 81.716, "epsilon": -124.004, "zeta": -92.679, "epsilon_zeta": -31.325, "bb_type": "--", "chi": -179.372, "glyco_bond": "anti", "C5prime_xyz": [ -1.469, 8.534, 1.632 ], "P_xyz": [ 0.828, 9.621, 1.093 ], "form": "A", "ssZp": 4.497, "Dp": 4.579, "splay_angle": 21.071, "splay_distance": 3.339, "splay_ratio": 0.183, "d22": 4.492, "d64": 4.150, "eta": 162.131, "theta": -155.133, "eta_prime": 176.132, "theta_prime": -153.331, "eta_base": -147.975, "theta_base": -127.605, "v0": -1.098, "v1": -20.735, "v2": 33.474, "v3": -35.099, "v4": 22.811, "amplitude": 35.709, "phase_angle": 20.380, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.009, "origin": [ 177.906, 204.399, 189.102 ], "x_axis": [ 0.768, -0.452, -0.454 ], "y_axis": [ -0.129, -0.803, 0.582 ], "z_axis": [ -0.627, -0.389, -0.675 ], "quaternion": [ 0.269, 0.901, -0.161, -0.300 ] } }, { "index": 842, "index_chain": 842, "chain_name": "A", "nt_resnum": 844, "nt_name": "U", "nt_code": "U", "nt_id": "///A/844", "linked_nts": [ "///A/843", "///A/845" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -49.131, "beta": 156.623, "gamma": 42.483, "delta": 81.057, "epsilon": -170.956, "zeta": -78.570, "epsilon_zeta": -92.386, "bb_type": "BI", "chi": -161.640, "glyco_bond": "anti", "C5prime_xyz": [ -1.502, 8.717, 0.609 ], "P_xyz": [ 1.059, 9.095, 0.867 ], "form": "A", "ssZp": 4.340, "Dp": 4.417, "splay_angle": 18.856, "splay_distance": 3.251, "splay_ratio": 0.174, "d22": null, "d64": null, "eta": 157.763, "theta": -131.438, "eta_prime": 175.289, "theta_prime": -140.048, "eta_base": -143.322, "theta_base": -116.339, "v0": 0.086, "v1": -22.472, "v2": 35.031, "v3": -35.997, "v4": 22.664, "amplitude": 36.943, "phase_angle": 18.513, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.367, "filter_rmsd": 0.100, "frame": { "rmsd": 0.011, "origin": [ 176.291, 204.151, 186.190 ], "x_axis": [ 0.618, -0.786, -0.012 ], "y_axis": [ -0.567, -0.456, 0.686 ], "z_axis": [ -0.545, -0.417, -0.728 ], "quaternion": [ 0.329, 0.837, -0.404, -0.167 ] } }, { "index": 843, "index_chain": 843, "chain_name": "A", "nt_resnum": 845, "nt_name": "G", "nt_code": "G", "nt_id": "///A/845", "linked_nts": [ "///A/844", "///A/846" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 163.192, "beta": -149.513, "gamma": 164.938, "delta": 84.338, "epsilon": -124.100, "zeta": -80.040, "epsilon_zeta": -44.059, "bb_type": "--", "chi": -175.289, "glyco_bond": "anti", "C5prime_xyz": [ -1.573, 8.612, 1.413 ], "P_xyz": [ 0.497, 9.862, 0.408 ], "form": "A", "ssZp": 4.402, "Dp": 4.513, "splay_angle": 23.541, "splay_distance": 3.866, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 169.834, "theta": -148.148, "eta_prime": -175.236, "theta_prime": -147.627, "eta_base": -132.793, "theta_base": -120.669, "v0": -1.361, "v1": -19.513, "v2": 31.693, "v3": -33.404, "v4": 21.961, "amplitude": 33.922, "phase_angle": 20.882, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.571, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 176.677, 202.993, 183.177 ], "x_axis": [ 0.252, -0.890, 0.379 ], "y_axis": [ -0.878, -0.046, 0.476 ], "z_axis": [ -0.406, -0.453, -0.794 ], "quaternion": [ 0.321, 0.723, -0.612, -0.009 ] } }, { "index": 844, "index_chain": 844, "chain_name": "A", "nt_resnum": 846, "nt_name": "G", "nt_code": "G", "nt_id": "///A/846", "linked_nts": [ "///A/845", "///A/847" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -66.661, "beta": 169.633, "gamma": 52.129, "delta": 78.646, "epsilon": -159.217, "zeta": 36.534, "epsilon_zeta": 164.249, "bb_type": "--", "chi": -145.072, "glyco_bond": "anti", "C5prime_xyz": [ -1.686, 8.853, -0.425 ], "P_xyz": [ 0.788, 9.565, -0.868 ], "form": ".", "ssZp": 3.957, "Dp": 4.533, "splay_angle": 23.912, "splay_distance": 3.780, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 156.585, "theta": -25.913, "eta_prime": 174.923, "theta_prime": -67.760, "eta_base": -143.750, "theta_base": -107.478, "v0": -2.150, "v1": -21.579, "v2": 35.694, "v3": -37.938, "v4": 25.273, "amplitude": 38.424, "phase_angle": 21.730, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.644, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 176.520, 200.548, 180.186 ], "x_axis": [ -0.300, -0.753, 0.586 ], "y_axis": [ -0.922, 0.387, 0.025 ], "z_axis": [ -0.246, -0.532, -0.810 ], "quaternion": [ -0.263, -0.530, 0.790, -0.161 ] } }, { "index": 845, "index_chain": 845, "chain_name": "A", "nt_resnum": 847, "nt_name": "A", "nt_code": "A", "nt_id": "///A/847", "linked_nts": [ "///A/846", "///A/848" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor,splayed-apart", "alpha": 117.611, "beta": 166.648, "gamma": 84.769, "delta": 150.767, "epsilon": -95.202, "zeta": 132.389, "epsilon_zeta": 132.409, "bb_type": "BII", "chi": -133.242, "glyco_bond": "anti", "C5prime_xyz": [ -1.814, 8.615, -0.439 ], "P_xyz": [ 0.786, 8.903, -0.267 ], "form": ".", "ssZp": 0.701, "Dp": 0.723, "splay_angle": 120.647, "splay_distance": 17.321, "splay_ratio": 0.869, "d22": null, "d64": null, "eta": 54.604, "theta": 162.748, "eta_prime": 119.566, "theta_prime": 102.654, "eta_base": 118.370, "theta_base": 92.718, "v0": -20.297, "v1": 36.086, "v2": -37.113, "v3": 26.355, "v4": -3.994, "amplitude": 38.065, "phase_angle": 167.161, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.011, "origin": [ 174.826, 197.424, 178.899 ], "x_axis": [ 0.673, 0.556, -0.488 ], "y_axis": [ -0.724, 0.630, -0.281 ], "z_axis": [ 0.151, 0.542, 0.827 ], "quaternion": [ 0.885, -0.233, 0.181, 0.362 ] } }, { "index": 846, "index_chain": 846, "chain_name": "A", "nt_resnum": 848, "nt_name": "G", "nt_code": "G", "nt_id": "///A/848", "linked_nts": [ "///A/847", "///A/849" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": 62.572, "beta": -147.103, "gamma": 53.534, "delta": 146.111, "epsilon": -97.704, "zeta": -98.566, "epsilon_zeta": 0.862, "bb_type": "--", "chi": -111.299, "glyco_bond": "anti", "C5prime_xyz": [ -2.270, 8.423, -1.635 ], "P_xyz": [ -0.281, 9.922, -0.812 ], "form": ".", "ssZp": 0.905, "Dp": 0.898, "splay_angle": 152.869, "splay_distance": 18.541, "splay_ratio": 0.972, "d22": null, "d64": null, "eta": 29.669, "theta": -42.751, "eta_prime": 27.370, "theta_prime": -77.206, "eta_base": 13.675, "theta_base": -146.821, "v0": -24.149, "v1": 37.759, "v2": -36.201, "v3": 23.147, "v4": 0.431, "amplitude": 38.376, "phase_angle": 160.620, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.040, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 158.218, 194.692, 174.812 ], "x_axis": [ -0.624, 0.778, 0.074 ], "y_axis": [ 0.707, 0.521, 0.479 ], "z_axis": [ 0.334, 0.351, -0.875 ], "quaternion": [ 0.075, 0.427, 0.869, 0.239 ] } }, { "index": 847, "index_chain": 847, "chain_name": "A", "nt_resnum": 849, "nt_name": "A", "nt_code": "A", "nt_id": "///A/849", "linked_nts": [ "///A/848", "///A/850" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-donor,splayed-apart", "alpha": 55.912, "beta": 155.057, "gamma": 46.476, "delta": 83.062, "epsilon": -138.154, "zeta": -69.812, "epsilon_zeta": -68.342, "bb_type": "BI", "chi": -174.814, "glyco_bond": "anti", "C5prime_xyz": [ -1.572, 8.500, 1.387 ], "P_xyz": [ 0.975, 8.686, 1.979 ], "form": "A", "ssZp": 4.551, "Dp": 4.604, "splay_angle": 22.812, "splay_distance": 3.571, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": -111.866, "theta": -130.472, "eta_prime": -61.938, "theta_prime": -130.525, "eta_base": 24.562, "theta_base": -87.504, "v0": 0.775, "v1": -22.233, "v2": 33.944, "v3": -34.515, "v4": 21.293, "amplitude": 35.578, "phase_angle": 17.431, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "8d", "suiteness": 0.562, "filter_rmsd": 0.041, "frame": { "rmsd": 0.012, "origin": [ 176.659, 193.093, 175.881 ], "x_axis": [ -0.074, -0.610, 0.789 ], "y_axis": [ -0.889, 0.399, 0.225 ], "z_axis": [ -0.452, -0.685, -0.572 ], "quaternion": [ -0.434, -0.524, 0.715, -0.161 ] } }, { "index": 848, "index_chain": 848, "chain_name": "A", "nt_resnum": 850, "nt_name": "U", "nt_code": "U", "nt_id": "///A/850", "linked_nts": [ "///A/849", "///A/851" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop", "alpha": -71.383, "beta": 167.507, "gamma": 57.762, "delta": 81.415, "epsilon": -152.732, "zeta": -75.080, "epsilon_zeta": -77.651, "bb_type": "BI", "chi": -164.829, "glyco_bond": "anti", "C5prime_xyz": [ -1.374, 8.662, 0.800 ], "P_xyz": [ 1.207, 9.052, 0.866 ], "form": "A", "ssZp": 4.503, "Dp": 4.604, "splay_angle": 23.770, "splay_distance": 3.795, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 158.093, "theta": -147.987, "eta_prime": 178.932, "theta_prime": -147.813, "eta_base": -115.760, "theta_base": -129.507, "v0": 2.250, "v1": -24.609, "v2": 36.319, "v3": -36.008, "v4": 21.320, "amplitude": 37.644, "phase_angle": 15.247, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.898, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 175.648, 189.678, 175.609 ], "x_axis": [ -0.684, -0.120, 0.720 ], "y_axis": [ -0.599, 0.656, -0.460 ], "z_axis": [ -0.417, -0.745, -0.521 ], "quaternion": [ -0.336, -0.212, 0.846, -0.356 ] } }, { "index": 849, "index_chain": 849, "chain_name": "A", "nt_resnum": 851, "nt_name": "A", "nt_code": "A", "nt_id": "///A/851", "linked_nts": [ "///A/850", "///A/852" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": -57.734, "beta": 170.322, "gamma": 55.670, "delta": 84.454, "epsilon": -91.987, "zeta": -151.011, "epsilon_zeta": 59.024, "bb_type": "--", "chi": -163.868, "glyco_bond": "anti", "C5prime_xyz": [ -1.671, 8.751, 0.754 ], "P_xyz": [ 0.836, 9.280, 1.304 ], "form": ".", "ssZp": 3.837, "Dp": 4.364, "splay_angle": 17.079, "splay_distance": 2.924, "splay_ratio": 0.156, "d22": null, "d64": null, "eta": -167.772, "theta": -135.815, "eta_prime": -160.009, "theta_prime": -140.081, "eta_base": -135.710, "theta_base": -115.500, "v0": -2.926, "v1": -18.234, "v2": 31.215, "v3": -33.749, "v4": 23.133, "amplitude": 34.013, "phase_angle": 23.400, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.919, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 175.059, 185.977, 175.015 ], "x_axis": [ -0.815, 0.312, 0.489 ], "y_axis": [ -0.206, 0.633, -0.746 ], "z_axis": [ -0.542, -0.709, -0.452 ], "quaternion": [ -0.303, 0.031, 0.851, -0.427 ] } }, { "index": 850, "index_chain": 850, "chain_name": "A", "nt_resnum": 852, "nt_name": "G", "nt_code": "G", "nt_id": "///A/852", "linked_nts": [ "///A/851", "///A/853" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": 95.333, "beta": -99.755, "gamma": 169.042, "delta": 76.120, "epsilon": 119.317, "zeta": 59.416, "epsilon_zeta": 59.901, "bb_type": "--", "chi": -162.043, "glyco_bond": "anti", "C5prime_xyz": [ -1.131, 8.713, 0.744 ], "P_xyz": [ 0.440, 8.770, -1.342 ], "form": ".", "ssZp": 3.522, "Dp": 3.663, "splay_angle": 26.604, "splay_distance": 4.230, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": 155.908, "theta": -120.123, "eta_prime": -176.703, "theta_prime": -138.727, "eta_base": -139.659, "theta_base": -77.833, "v0": 4.997, "v1": -26.637, "v2": 37.184, "v3": -35.357, "v4": 19.202, "amplitude": 37.922, "phase_angle": 11.328, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 173.522, 183.987, 173.522 ], "x_axis": [ -0.763, 0.627, 0.158 ], "y_axis": [ 0.005, 0.251, -0.968 ], "z_axis": [ -0.647, -0.738, -0.194 ], "quaternion": [ -0.271, 0.213, 0.743, -0.574 ] } }, { "index": 851, "index_chain": 851, "chain_name": "A", "nt_resnum": 853, "nt_name": "C", "nt_code": "C", "nt_id": "///A/853", "linked_nts": [ "///A/852", "///A/854" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -156.949, "beta": 161.097, "gamma": 71.228, "delta": 81.235, "epsilon": -136.870, "zeta": -48.931, "epsilon_zeta": -87.939, "bb_type": "BI", "chi": -145.375, "glyco_bond": "anti", "C5prime_xyz": [ -1.395, 8.789, -0.367 ], "P_xyz": [ 0.988, 9.005, -1.405 ], "form": ".", "ssZp": 3.803, "Dp": 4.670, "splay_angle": 34.851, "splay_distance": 6.060, "splay_ratio": 0.304, "d22": 4.849, "d64": 6.356, "eta": 137.540, "theta": -140.406, "eta_prime": 173.847, "theta_prime": -162.159, "eta_base": -100.281, "theta_base": -177.838, "v0": 0.734, "v1": -23.194, "v2": 35.610, "v3": -36.149, "v4": 22.346, "amplitude": 37.339, "phase_angle": 17.506, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.006, "origin": [ 169.654, 184.005, 171.811 ], "x_axis": [ -0.454, 0.467, -0.758 ], "y_axis": [ 0.504, -0.567, -0.651 ], "z_axis": [ -0.735, -0.678, 0.022 ], "quaternion": [ -0.013, -0.522, -0.465, 0.715 ] } }, { "index": 852, "index_chain": 852, "chain_name": "A", "nt_resnum": 854, "nt_name": "U", "nt_code": "U", "nt_id": "///A/854", "linked_nts": [ "///A/853", "///A/855" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -118.269, "beta": 86.362, "gamma": 161.787, "delta": 82.629, "epsilon": -127.836, "zeta": -60.943, "epsilon_zeta": -66.894, "bb_type": "BI", "chi": 171.111, "glyco_bond": "anti", "C5prime_xyz": [ -1.488, 8.121, 2.159 ], "P_xyz": [ -1.345, 10.385, 0.867 ], "form": ".", "ssZp": 4.648, "Dp": 4.696, "splay_angle": 28.421, "splay_distance": 4.449, "splay_ratio": 0.249, "d22": null, "d64": null, "eta": -177.038, "theta": -176.403, "eta_prime": 173.150, "theta_prime": -158.917, "eta_base": 168.994, "theta_base": -102.286, "v0": 3.302, "v1": -24.476, "v2": 35.198, "v3": -34.245, "v4": 19.535, "amplitude": 36.198, "phase_angle": 13.497, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.320, "filter_rmsd": 0.108, "frame": { "rmsd": 0.010, "origin": [ 166.148, 180.463, 175.259 ], "x_axis": [ -0.300, 0.773, -0.559 ], "y_axis": [ 0.588, -0.311, -0.747 ], "z_axis": [ -0.751, -0.553, -0.362 ], "quaternion": [ -0.083, 0.586, 0.581, -0.559 ] } }, { "index": 853, "index_chain": 853, "chain_name": "A", "nt_resnum": 855, "nt_name": "G", "nt_code": "G", "nt_id": "///A/855", "linked_nts": [ "///A/854", "///A/856" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,internal-loop,A-minor", "alpha": -67.777, "beta": 172.625, "gamma": 51.264, "delta": 80.623, "epsilon": -159.306, "zeta": -59.720, "epsilon_zeta": -99.586, "bb_type": "BI", "chi": -172.941, "glyco_bond": "anti", "C5prime_xyz": [ -1.530, 8.627, 1.261 ], "P_xyz": [ 0.954, 9.065, 1.958 ], "form": "A", "ssZp": 4.503, "Dp": 4.531, "splay_angle": 22.297, "splay_distance": 3.673, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 153.779, "theta": -134.156, "eta_prime": -178.904, "theta_prime": -138.418, "eta_base": -103.617, "theta_base": -109.977, "v0": 0.608, "v1": -23.107, "v2": 35.534, "v3": -36.147, "v4": 22.445, "amplitude": 37.298, "phase_angle": 17.688, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.725, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 162.626, 180.947, 172.586 ], "x_axis": [ 0.354, 0.233, -0.906 ], "y_axis": [ 0.632, -0.773, 0.048 ], "z_axis": [ -0.689, -0.590, -0.421 ], "quaternion": [ 0.200, 0.798, 0.271, -0.500 ] } }, { "index": 854, "index_chain": 854, "chain_name": "A", "nt_resnum": 856, "nt_name": "G", "nt_code": "G", "nt_id": "///A/856", "linked_nts": [ "///A/855", "///A/857" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop,A-minor,phosphate", "alpha": -143.239, "beta": 174.046, "gamma": 124.355, "delta": 84.724, "epsilon": -129.744, "zeta": -70.241, "epsilon_zeta": -59.503, "bb_type": "BI", "chi": 177.828, "glyco_bond": "anti", "C5prime_xyz": [ -1.611, 8.396, 1.782 ], "P_xyz": [ 0.701, 9.526, 1.291 ], "form": "A", "ssZp": 4.513, "Dp": 4.586, "splay_angle": 22.530, "splay_distance": 3.558, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 164.708, "theta": -137.428, "eta_prime": -178.451, "theta_prime": -138.719, "eta_base": -131.433, "theta_base": -93.560, "v0": 0.934, "v1": -21.958, "v2": 33.386, "v3": -33.811, "v4": 20.769, "amplitude": 34.938, "phase_angle": 17.139, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 159.882, 180.936, 170.143 ], "x_axis": [ 0.705, -0.222, -0.674 ], "y_axis": [ 0.281, -0.784, 0.553 ], "z_axis": [ -0.651, -0.579, -0.490 ], "quaternion": [ 0.328, 0.863, 0.017, -0.384 ] } }, { "index": 855, "index_chain": 855, "chain_name": "A", "nt_resnum": 857, "nt_name": "U", "nt_code": "U", "nt_id": "///A/857", "linked_nts": [ "///A/856", "///A/858" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop", "alpha": -75.818, "beta": 170.485, "gamma": 57.276, "delta": 83.744, "epsilon": -97.553, "zeta": 119.019, "epsilon_zeta": 143.428, "bb_type": "--", "chi": -161.953, "glyco_bond": "anti", "C5prime_xyz": [ -1.490, 8.710, 0.628 ], "P_xyz": [ 1.086, 9.162, 0.774 ], "form": ".", "ssZp": 4.022, "Dp": 4.600, "splay_angle": 76.504, "splay_distance": 10.027, "splay_ratio": 0.646, "d22": 11.247, "d64": 11.159, "eta": 168.374, "theta": 88.403, "eta_prime": -174.816, "theta_prime": 102.952, "eta_base": -115.843, "theta_base": 107.250, "v0": 0.466, "v1": -22.287, "v2": 34.389, "v3": -35.042, "v4": 21.807, "amplitude": 36.129, "phase_angle": 17.856, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.735, "filter_rmsd": 0.102, "frame": { "rmsd": 0.009, "origin": [ 159.196, 179.178, 167.127 ], "x_axis": [ 0.716, -0.698, -0.006 ], "y_axis": [ -0.395, -0.413, 0.821 ], "z_axis": [ -0.575, -0.585, -0.572 ], "quaternion": [ 0.428, 0.822, -0.333, -0.177 ] } }, { "index": 856, "index_chain": 856, "chain_name": "A", "nt_resnum": 858, "nt_name": "U", "nt_code": "U", "nt_id": "///A/858", "linked_nts": [ "///A/857", "///A/859" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": 178.575, "beta": -156.604, "gamma": 96.402, "delta": 140.848, "epsilon": -101.598, "zeta": -68.095, "epsilon_zeta": -33.503, "bb_type": "--", "chi": 55.051, "glyco_bond": "syn", "C5prime_xyz": [ -5.580, 4.264, 1.023 ], "P_xyz": [ -5.647, 1.663, 0.789 ], "form": ".", "ssZp": -1.137, "Dp": 1.104, "splay_angle": 88.539, "splay_distance": 15.003, "splay_ratio": 0.699, "d22": 9.292, "d64": 11.702, "eta": 179.150, "theta": -68.088, "eta_prime": -174.604, "theta_prime": -111.182, "eta_base": 171.848, "theta_base": -107.497, "v0": -27.477, "v1": 38.107, "v2": -33.591, "v3": 18.645, "v4": 5.319, "amplitude": 37.639, "phase_angle": 153.184, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.107, "frame": { "rmsd": 0.010, "origin": [ 151.151, 181.197, 172.760 ], "x_axis": [ -0.184, 0.864, 0.468 ], "y_axis": [ -0.683, -0.455, 0.572 ], "z_axis": [ 0.707, -0.214, 0.674 ], "quaternion": [ 0.509, 0.386, 0.117, 0.760 ] } }, { "index": 857, "index_chain": 857, "chain_name": "A", "nt_resnum": 859, "nt_name": "C", "nt_code": "C", "nt_id": "///A/859", "linked_nts": [ "///A/858", "///A/860" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,ribose-zipper,splayed-apart", "alpha": -53.454, "beta": -120.517, "gamma": -60.195, "delta": 81.340, "epsilon": -162.393, "zeta": -69.517, "epsilon_zeta": -92.876, "bb_type": "BI", "chi": -173.007, "glyco_bond": "anti", "C5prime_xyz": [ -1.446, 8.606, 1.272 ], "P_xyz": [ -2.024, 10.931, 2.326 ], "form": "A", "ssZp": 4.524, "Dp": 4.525, "splay_angle": 24.933, "splay_distance": 4.031, "splay_ratio": 0.224, "d22": 4.965, "d64": 5.389, "eta": 108.920, "theta": 149.853, "eta_prime": 135.347, "theta_prime": 168.739, "eta_base": 134.022, "theta_base": -166.194, "v0": 1.499, "v1": -24.251, "v2": 36.450, "v3": -36.522, "v4": 22.079, "amplitude": 37.980, "phase_angle": 16.322, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.058, "frame": { "rmsd": 0.010, "origin": [ 138.910, 176.219, 165.655 ], "x_axis": [ 0.498, 0.806, -0.319 ], "y_axis": [ 0.597, -0.052, 0.801 ], "z_axis": [ 0.629, -0.589, -0.507 ], "quaternion": [ 0.485, 0.717, 0.489, 0.108 ] } }, { "index": 858, "index_chain": 858, "chain_name": "A", "nt_resnum": 860, "nt_name": "U", "nt_code": "U", "nt_id": "///A/860", "linked_nts": [ "///A/859", "///A/861" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,ribose-zipper,phosphate", "alpha": -73.788, "beta": -178.307, "gamma": 63.519, "delta": 80.267, "epsilon": -159.388, "zeta": -69.609, "epsilon_zeta": -89.779, "bb_type": "BI", "chi": -166.012, "glyco_bond": "anti", "C5prime_xyz": [ -1.603, 8.751, 0.831 ], "P_xyz": [ 0.897, 9.434, 1.190 ], "form": "A", "ssZp": 4.459, "Dp": 4.500, "splay_angle": 25.470, "splay_distance": 4.022, "splay_ratio": 0.222, "d22": 4.658, "d64": 4.880, "eta": 174.430, "theta": -151.717, "eta_prime": -175.648, "theta_prime": -150.515, "eta_base": -155.611, "theta_base": -123.818, "v0": -1.813, "v1": -21.143, "v2": 34.680, "v3": -36.685, "v4": 24.297, "amplitude": 37.227, "phase_angle": 21.318, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.721, "filter_rmsd": 0.098, "frame": { "rmsd": 0.010, "origin": [ 138.605, 174.058, 162.266 ], "x_axis": [ 0.717, 0.697, -0.027 ], "y_axis": [ 0.400, -0.379, 0.835 ], "z_axis": [ 0.571, -0.609, -0.550 ], "quaternion": [ 0.444, 0.813, 0.337, 0.167 ] } }, { "index": 859, "index_chain": 859, "chain_name": "A", "nt_resnum": 861, "nt_name": "C", "nt_code": "C", "nt_id": "///A/861", "linked_nts": [ "///A/860", "///A/862" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -76.118, "beta": 175.252, "gamma": 68.551, "delta": 82.431, "epsilon": -161.712, "zeta": -65.553, "epsilon_zeta": -96.159, "bb_type": "BI", "chi": -164.826, "glyco_bond": "anti", "C5prime_xyz": [ -1.376, 8.752, 0.784 ], "P_xyz": [ 1.205, 9.202, 0.827 ], "form": "A", "ssZp": 4.415, "Dp": 4.479, "splay_angle": 19.052, "splay_distance": 3.179, "splay_ratio": 0.172, "d22": 4.483, "d64": 4.558, "eta": 171.780, "theta": -146.100, "eta_prime": -173.136, "theta_prime": -149.520, "eta_base": -132.695, "theta_base": -141.138, "v0": -0.241, "v1": -21.900, "v2": 34.381, "v3": -35.454, "v4": 22.530, "amplitude": 36.350, "phase_angle": 18.947, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.563, "filter_rmsd": 0.060, "frame": { "rmsd": 0.010, "origin": [ 140.465, 172.898, 158.893 ], "x_axis": [ 0.835, 0.360, 0.415 ], "y_axis": [ -0.056, -0.695, 0.717 ], "z_axis": [ 0.547, -0.622, -0.560 ], "quaternion": [ 0.381, 0.879, 0.087, 0.274 ] } }, { "index": 860, "index_chain": 860, "chain_name": "A", "nt_resnum": 862, "nt_name": "U", "nt_code": "U", "nt_id": "///A/862", "linked_nts": [ "///A/861", "///A/863" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -84.206, "beta": -178.956, "gamma": 64.854, "delta": 80.758, "epsilon": -158.004, "zeta": -68.679, "epsilon_zeta": -89.325, "bb_type": "BI", "chi": -156.010, "glyco_bond": "anti", "C5prime_xyz": [ -1.829, 8.832, 0.223 ], "P_xyz": [ 0.654, 9.661, 0.272 ], "form": "A", "ssZp": 4.222, "Dp": 4.449, "splay_angle": 29.520, "splay_distance": 4.723, "splay_ratio": 0.255, "d22": 4.463, "d64": 4.437, "eta": 165.408, "theta": -149.288, "eta_prime": 178.387, "theta_prime": -149.275, "eta_base": -158.176, "theta_base": -120.331, "v0": -3.435, "v1": -19.527, "v2": 33.628, "v3": -36.556, "v4": 25.210, "amplitude": 36.757, "phase_angle": 23.812, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.545, "filter_rmsd": 0.099, "frame": { "rmsd": 0.009, "origin": [ 141.755, 172.769, 155.991 ], "x_axis": [ 0.705, 0.076, 0.705 ], "y_axis": [ -0.282, -0.882, 0.377 ], "z_axis": [ 0.651, -0.464, -0.600 ], "quaternion": [ 0.236, 0.893, -0.058, 0.380 ] } }, { "index": 861, "index_chain": 861, "chain_name": "A", "nt_resnum": 863, "nt_name": "C", "nt_code": "C", "nt_id": "///A/863", "linked_nts": [ "///A/862", "///A/864" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -71.615, "beta": -170.407, "gamma": 45.707, "delta": 79.727, "epsilon": -143.082, "zeta": -79.109, "epsilon_zeta": -63.973, "bb_type": "BI", "chi": -162.745, "glyco_bond": "anti", "C5prime_xyz": [ -1.238, 8.738, 0.683 ], "P_xyz": [ 1.216, 9.210, 1.458 ], "form": "A", "ssZp": 4.495, "Dp": 4.688, "splay_angle": 21.407, "splay_distance": 3.423, "splay_ratio": 0.188, "d22": 4.150, "d64": 4.396, "eta": 167.639, "theta": -151.420, "eta_prime": 175.239, "theta_prime": -147.724, "eta_base": -145.599, "theta_base": -125.883, "v0": 2.299, "v1": -25.062, "v2": 37.053, "v3": -36.729, "v4": 21.713, "amplitude": 38.404, "phase_angle": 15.246, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.781, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 145.769, 171.574, 153.806 ], "x_axis": [ 0.150, -0.263, 0.953 ], "y_axis": [ -0.739, -0.670, -0.069 ], "z_axis": [ 0.657, -0.694, -0.295 ], "quaternion": [ 0.215, 0.727, -0.345, 0.553 ] } }, { "index": 862, "index_chain": 862, "chain_name": "A", "nt_resnum": 864, "nt_name": "C", "nt_code": "C", "nt_id": "///A/864", "linked_nts": [ "///A/863", "///A/865" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -64.243, "beta": 160.810, "gamma": 59.339, "delta": 77.952, "epsilon": -139.599, "zeta": -64.561, "epsilon_zeta": -75.038, "bb_type": "BI", "chi": -169.013, "glyco_bond": "anti", "C5prime_xyz": [ -1.590, 8.714, 0.927 ], "P_xyz": [ 0.938, 9.295, 0.717 ], "form": ".", "ssZp": 4.623, "Dp": 4.730, "splay_angle": 37.523, "splay_distance": 5.706, "splay_ratio": 0.322, "d22": null, "d64": null, "eta": 164.984, "theta": -131.657, "eta_prime": 177.534, "theta_prime": -128.844, "eta_base": -148.960, "theta_base": -90.204, "v0": 0.630, "v1": -24.716, "v2": 38.002, "v3": -38.693, "v4": 23.958, "amplitude": 39.888, "phase_angle": 17.691, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.850, "filter_rmsd": 0.059, "frame": { "rmsd": 0.022, "origin": [ 148.956, 170.372, 153.462 ], "x_axis": [ -0.263, -0.448, 0.854 ], "y_axis": [ -0.667, -0.555, -0.497 ], "z_axis": [ 0.697, -0.701, -0.153 ], "quaternion": [ 0.085, 0.601, -0.464, 0.645 ] } }, { "index": 863, "index_chain": 863, "chain_name": "A", "nt_resnum": 865, "nt_name": "G", "nt_code": "G", "nt_id": "///A/865", "linked_nts": [ "///A/864", "///A/866" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper", "alpha": -71.102, "beta": 170.066, "gamma": 68.813, "delta": 81.028, "epsilon": -140.052, "zeta": -147.840, "epsilon_zeta": 7.788, "bb_type": "--", "chi": -173.647, "glyco_bond": "anti", "C5prime_xyz": [ -1.313, 8.491, 1.293 ], "P_xyz": [ 1.273, 8.855, 1.170 ], "form": ".", "ssZp": 4.726, "Dp": 4.744, "splay_angle": 71.080, "splay_distance": 11.395, "splay_ratio": 0.590, "d22": null, "d64": null, "eta": 171.177, "theta": 173.765, "eta_prime": -166.704, "theta_prime": 160.971, "eta_base": -105.636, "theta_base": 151.426, "v0": 4.726, "v1": -26.968, "v2": 37.762, "v3": -36.043, "v4": 19.775, "amplitude": 38.567, "phase_angle": 11.727, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.578, "filter_rmsd": 0.017, "frame": { "rmsd": 0.017, "origin": [ 150.626, 165.410, 155.733 ], "x_axis": [ -0.744, -0.658, 0.120 ], "y_axis": [ -0.238, 0.094, -0.967 ], "z_axis": [ 0.625, -0.747, -0.226 ], "quaternion": [ 0.176, -0.312, 0.718, -0.597 ] } }, { "index": 864, "index_chain": 864, "chain_name": "A", "nt_resnum": 866, "nt_name": "A", "nt_code": "A", "nt_id": "///A/866", "linked_nts": [ "///A/865", "///A/867" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,A-minor,ribose-zipper,phosphate", "alpha": 80.697, "beta": -118.392, "gamma": -120.914, "delta": 83.929, "epsilon": -139.614, "zeta": -66.791, "epsilon_zeta": -72.822, "bb_type": "BI", "chi": -178.862, "glyco_bond": "anti", "C5prime_xyz": [ -1.300, 8.284, 1.630 ], "P_xyz": [ -1.127, 10.763, 0.823 ], "form": "A", "ssZp": 4.707, "Dp": 4.707, "splay_angle": 24.655, "splay_distance": 3.850, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": -152.948, "theta": 174.524, "eta_prime": -174.448, "theta_prime": -169.192, "eta_base": 163.880, "theta_base": -123.821, "v0": 5.857, "v1": -26.780, "v2": 36.353, "v3": -33.950, "v4": 17.727, "amplitude": 36.876, "phase_angle": 9.658, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.013, "origin": [ 161.117, 169.693, 154.530 ], "x_axis": [ -0.169, -0.551, 0.818 ], "y_axis": [ -0.715, -0.503, -0.486 ], "z_axis": [ 0.679, -0.666, -0.309 ], "quaternion": [ 0.070, 0.641, -0.494, 0.584 ] } }, { "index": 865, "index_chain": 865, "chain_name": "A", "nt_resnum": 867, "nt_name": "A", "nt_code": "A", "nt_id": "///A/867", "linked_nts": [ "///A/866", "///A/868" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop,phosphate", "alpha": -73.325, "beta": 167.618, "gamma": 66.076, "delta": 81.543, "epsilon": -134.128, "zeta": -82.413, "epsilon_zeta": -51.715, "bb_type": "BI", "chi": -175.161, "glyco_bond": "anti", "C5prime_xyz": [ -1.677, 8.520, 1.368 ], "P_xyz": [ 0.875, 9.054, 1.562 ], "form": "A", "ssZp": 4.648, "Dp": 4.674, "splay_angle": 21.998, "splay_distance": 3.408, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": 167.041, "theta": -143.054, "eta_prime": -173.072, "theta_prime": -140.088, "eta_base": -117.930, "theta_base": -108.214, "v0": 0.419, "v1": -22.876, "v2": 35.303, "v3": -36.028, "v4": 22.469, "amplitude": 37.109, "phase_angle": 17.952, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.684, "filter_rmsd": 0.040, "frame": { "rmsd": 0.011, "origin": [ 163.824, 167.251, 155.770 ], "x_axis": [ -0.591, -0.749, 0.299 ], "y_axis": [ -0.426, -0.025, -0.904 ], "z_axis": [ 0.685, -0.662, -0.304 ], "quaternion": [ 0.141, -0.429, 0.684, -0.573 ] } }, { "index": 866, "index_chain": 866, "chain_name": "A", "nt_resnum": 868, "nt_name": "A", "nt_code": "A", "nt_id": "///A/868", "linked_nts": [ "///A/867", "///A/869" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart", "alpha": -76.050, "beta": 167.465, "gamma": 73.102, "delta": 85.884, "epsilon": -98.534, "zeta": 89.828, "epsilon_zeta": 171.638, "bb_type": "--", "chi": -142.549, "glyco_bond": "anti", "C5prime_xyz": [ -1.423, 8.689, -0.516 ], "P_xyz": [ 1.020, 8.891, -1.432 ], "form": ".", "ssZp": 3.082, "Dp": 4.583, "splay_angle": 101.530, "splay_distance": 15.764, "splay_ratio": 0.775, "d22": null, "d64": null, "eta": -174.761, "theta": 53.063, "eta_prime": -165.321, "theta_prime": 54.836, "eta_base": -127.647, "theta_base": 47.722, "v0": 0.789, "v1": -21.531, "v2": 32.827, "v3": -33.291, "v4": 20.550, "amplitude": 34.387, "phase_angle": 17.328, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.352, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 165.570, 164.357, 156.201 ], "x_axis": [ -0.611, -0.713, -0.345 ], "y_axis": [ 0.267, 0.224, -0.937 ], "z_axis": [ 0.745, -0.664, 0.053 ], "quaternion": [ 0.408, -0.167, 0.667, -0.600 ] } }, { "index": 867, "index_chain": 867, "chain_name": "A", "nt_resnum": 869, "nt_name": "U", "nt_code": "U", "nt_id": "///A/869", "linked_nts": [ "///A/868", "///A/870" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -135.901, "beta": -159.890, "gamma": 40.829, "delta": 142.488, "epsilon": -160.057, "zeta": -132.698, "epsilon_zeta": -27.359, "bb_type": "--", "chi": -118.296, "glyco_bond": "anti", "C5prime_xyz": [ -2.529, 8.526, -1.311 ], "P_xyz": [ -0.807, 10.318, -0.484 ], "form": ".", "ssZp": 2.343, "Dp": 2.218, "splay_angle": 20.810, "splay_distance": 3.604, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": 139.925, "theta": -133.744, "eta_prime": 169.136, "theta_prime": -162.267, "eta_base": -173.117, "theta_base": -138.627, "v0": -27.078, "v1": 39.062, "v2": -35.346, "v3": 20.610, "v4": 3.846, "amplitude": 38.817, "phase_angle": 155.587, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.099, "frame": { "rmsd": 0.010, "origin": [ 168.044, 174.926, 144.769 ], "x_axis": [ -0.243, 0.363, 0.900 ], "y_axis": [ 0.376, -0.819, 0.432 ], "z_axis": [ 0.894, 0.444, 0.063 ], "quaternion": [ -0.005, 0.615, 0.300, 0.729 ] } }, { "index": 868, "index_chain": 868, "chain_name": "A", "nt_resnum": 870, "nt_name": "A", "nt_code": "A", "nt_id": "///A/870", "linked_nts": [ "///A/869", "///A/871" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 132.204, "beta": -170.781, "gamma": 164.329, "delta": 83.168, "epsilon": -154.720, "zeta": -68.898, "epsilon_zeta": -85.823, "bb_type": "BI", "chi": -169.503, "glyco_bond": "anti", "C5prime_xyz": [ -1.248, 8.597, 1.106 ], "P_xyz": [ 0.487, 10.122, -0.129 ], "form": "A", "ssZp": 4.469, "Dp": 4.536, "splay_angle": 21.400, "splay_distance": 3.450, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": 129.972, "theta": -167.105, "eta_prime": 137.680, "theta_prime": -158.788, "eta_base": -179.613, "theta_base": -136.997, "v0": 2.295, "v1": -23.530, "v2": 34.582, "v3": -34.199, "v4": 20.155, "amplitude": 35.803, "phase_angle": 15.006, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.044, "frame": { "rmsd": 0.014, "origin": [ 170.352, 177.497, 143.745 ], "x_axis": [ -0.261, -0.240, 0.935 ], "y_axis": [ 0.400, -0.908, -0.122 ], "z_axis": [ 0.879, 0.342, 0.333 ], "quaternion": [ -0.202, 0.573, 0.070, 0.791 ] } }, { "index": 869, "index_chain": 869, "chain_name": "A", "nt_resnum": 871, "nt_name": "G", "nt_code": "G", "nt_id": "///A/871", "linked_nts": [ "///A/870", "///A/872" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -60.329, "beta": 177.937, "gamma": 59.349, "delta": 141.953, "epsilon": -163.040, "zeta": -79.927, "epsilon_zeta": -83.113, "bb_type": "BI", "chi": -146.049, "glyco_bond": "anti", "C5prime_xyz": [ -2.163, 8.736, 0.126 ], "P_xyz": [ 0.163, 9.381, 1.177 ], "form": ".", "ssZp": 2.536, "Dp": 2.478, "splay_angle": 19.261, "splay_distance": 3.573, "splay_ratio": 0.183, "d22": null, "d64": null, "eta": 170.096, "theta": -80.342, "eta_prime": -155.158, "theta_prime": -128.965, "eta_base": -122.749, "theta_base": -105.937, "v0": -24.018, "v1": 35.729, "v2": -32.987, "v3": 19.847, "v4": 2.402, "amplitude": 35.736, "phase_angle": 157.380, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.925, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 172.095, 179.944, 145.442 ], "x_axis": [ -0.213, -0.703, 0.679 ], "y_axis": [ 0.514, -0.671, -0.533 ], "z_axis": [ 0.831, 0.236, 0.504 ], "quaternion": [ -0.394, 0.488, -0.096, 0.773 ] } }, { "index": 870, "index_chain": 870, "chain_name": "A", "nt_resnum": 872, "nt_name": "C", "nt_code": "C", "nt_id": "///A/872", "linked_nts": [ "///A/871", "///A/873" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,cap-donor", "alpha": 145.433, "beta": 157.857, "gamma": 148.742, "delta": 77.004, "epsilon": -164.593, "zeta": -107.211, "epsilon_zeta": -57.382, "bb_type": "BI", "chi": -162.257, "glyco_bond": "anti", "C5prime_xyz": [ -1.491, 8.710, 0.578 ], "P_xyz": [ -0.774, 10.380, -1.336 ], "form": ".", "ssZp": 4.542, "Dp": 4.612, "splay_angle": 24.232, "splay_distance": 3.422, "splay_ratio": 0.226, "d22": 5.395, "d64": 3.801, "eta": 101.103, "theta": -168.361, "eta_prime": 130.960, "theta_prime": -156.967, "eta_base": -174.018, "theta_base": -63.055, "v0": 4.572, "v1": -29.038, "v2": 41.186, "v3": -39.559, "v4": 22.038, "amplitude": 42.178, "phase_angle": 12.451, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.059, "frame": { "rmsd": 0.011, "origin": [ 173.566, 181.224, 148.436 ], "x_axis": [ 0.060, -0.975, 0.212 ], "y_axis": [ 0.605, -0.134, -0.785 ], "z_axis": [ 0.794, 0.175, 0.582 ], "quaternion": [ 0.614, -0.391, 0.237, -0.643 ] } }, { "index": 871, "index_chain": 871, "chain_name": "A", "nt_resnum": 873, "nt_name": "U", "nt_code": "U", "nt_id": "///A/873", "linked_nts": [ "///A/872", "///A/874" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,phosphate,splayed-apart", "alpha": -173.190, "beta": -104.793, "gamma": 139.318, "delta": 87.241, "epsilon": -79.693, "zeta": -139.207, "epsilon_zeta": 59.514, "bb_type": "--", "chi": -98.996, "glyco_bond": "anti", "C5prime_xyz": [ -2.120, 7.525, -2.736 ], "P_xyz": [ -0.810, 5.623, -3.996 ], "form": ".", "ssZp": -0.480, "Dp": 4.520, "splay_angle": 150.564, "splay_distance": 20.501, "splay_ratio": 0.967, "d22": 11.842, "d64": 15.126, "eta": -167.703, "theta": -148.228, "eta_prime": -159.065, "theta_prime": -164.699, "eta_base": -69.527, "theta_base": -152.511, "v0": 3.451, "v1": -22.423, "v2": 31.725, "v3": -30.643, "v4": 17.221, "amplitude": 32.520, "phase_angle": 12.692, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.006, "origin": [ 175.910, 178.971, 147.371 ], "x_axis": [ 0.549, -0.834, -0.055 ], "y_axis": [ 0.798, 0.503, 0.331 ], "z_axis": [ -0.249, -0.226, 0.942 ], "quaternion": [ 0.865, 0.161, -0.056, -0.472 ] } }, { "index": 872, "index_chain": 872, "chain_name": "A", "nt_resnum": 874, "nt_name": "U", "nt_code": "U", "nt_id": "///A/874", "linked_nts": [ "///A/873", "///A/875" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -51.803, "beta": 153.708, "gamma": -176.024, "delta": 146.796, "epsilon": -112.054, "zeta": 57.974, "epsilon_zeta": 189.972, "bb_type": "--", "chi": -149.476, "glyco_bond": "anti", "C5prime_xyz": [ -1.882, 8.704, 0.376 ], "P_xyz": [ -0.625, 10.751, -0.678 ], "form": ".", "ssZp": 1.126, "Dp": 1.194, "splay_angle": 54.914, "splay_distance": 8.130, "splay_ratio": 0.499, "d22": 8.225, "d64": 6.577, "eta": 4.719, "theta": 28.217, "eta_prime": -6.615, "theta_prime": 42.411, "eta_base": -39.474, "theta_base": 30.065, "v0": -21.268, "v1": 35.561, "v2": -35.493, "v3": 24.134, "v4": -1.997, "amplitude": 36.868, "phase_angle": 164.303, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 190.067, 189.500, 157.811 ], "x_axis": [ 0.579, 0.449, -0.681 ], "y_axis": [ -0.643, -0.262, -0.719 ], "z_axis": [ -0.502, 0.854, 0.137 ], "quaternion": [ 0.603, -0.653, 0.074, 0.453 ] } }, { "index": 873, "index_chain": 873, "chain_name": "A", "nt_resnum": 875, "nt_name": "U", "nt_code": "U", "nt_id": "///A/875", "linked_nts": [ "///A/874", "///A/876" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": 174.143, "beta": -126.503, "gamma": 81.831, "delta": 82.574, "epsilon": -171.024, "zeta": -80.365, "epsilon_zeta": -90.659, "bb_type": "BI", "chi": -57.810, "glyco_bond": "--", "C5prime_xyz": [ -3.252, 5.545, -3.468 ], "P_xyz": [ -1.210, 4.318, -4.563 ], "form": ".", "ssZp": -1.898, "Dp": 4.535, "splay_angle": 26.181, "splay_distance": 4.236, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": 134.646, "theta": -127.210, "eta_prime": 142.418, "theta_prime": -142.300, "eta_base": 136.252, "theta_base": 147.381, "v0": 7.021, "v1": -28.066, "v2": 37.426, "v3": -34.325, "v4": 17.269, "amplitude": 37.808, "phase_angle": 8.155, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6g", "suiteness": 0.010, "filter_rmsd": 0.108, "frame": { "rmsd": 0.006, "origin": [ 185.963, 184.419, 152.970 ], "x_axis": [ 0.703, -0.240, 0.669 ], "y_axis": [ -0.652, -0.593, 0.472 ], "z_axis": [ 0.284, -0.768, -0.573 ], "quaternion": [ 0.366, 0.847, -0.263, 0.281 ] } }, { "index": 874, "index_chain": 874, "chain_name": "A", "nt_resnum": 876, "nt_name": "A", "nt_code": "A", "nt_id": "///A/876", "linked_nts": [ "///A/875", "///A/877" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 130.451, "beta": -159.761, "gamma": -157.636, "delta": 144.158, "epsilon": -91.331, "zeta": 13.207, "epsilon_zeta": 255.461, "bb_type": "--", "chi": -60.373, "glyco_bond": "--", "C5prime_xyz": [ -3.530, 6.532, -3.072 ], "P_xyz": [ -3.972, 5.424, -5.413 ], "form": ".", "ssZp": 0.184, "Dp": 0.791, "splay_angle": 128.483, "splay_distance": 18.984, "splay_ratio": 0.901, "d22": null, "d64": null, "eta": -142.684, "theta": -7.674, "eta_prime": -149.303, "theta_prime": -24.006, "eta_base": 148.742, "theta_base": -31.417, "v0": -23.221, "v1": 35.977, "v2": -34.306, "v3": 21.791, "v4": 0.693, "amplitude": 36.471, "phase_angle": 160.158, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 184.142, 181.041, 151.177 ], "x_axis": [ 0.947, 0.239, 0.214 ], "y_axis": [ -0.013, -0.639, 0.769 ], "z_axis": [ 0.320, -0.731, -0.602 ], "quaternion": [ 0.420, 0.893, 0.063, 0.150 ] } }, { "index": 875, "index_chain": 875, "chain_name": "A", "nt_resnum": 877, "nt_name": "G", "nt_code": "G", "nt_id": "///A/877", "linked_nts": [ "///A/876", "///A/878" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -169.551, "beta": -143.825, "gamma": -25.062, "delta": 151.199, "epsilon": -57.839, "zeta": -152.932, "epsilon_zeta": 95.093, "bb_type": "--", "chi": -78.187, "glyco_bond": "anti", "C5prime_xyz": [ -2.802, 7.316, -2.781 ], "P_xyz": [ -2.667, 9.675, -3.927 ], "form": ".", "ssZp": -0.079, "Dp": 0.145, "splay_angle": 154.180, "splay_distance": 18.019, "splay_ratio": 0.975, "d22": null, "d64": null, "eta": 57.651, "theta": -129.463, "eta_prime": 82.072, "theta_prime": -120.571, "eta_base": 71.817, "theta_base": -82.788, "v0": -20.222, "v1": 36.088, "v2": -37.261, "v3": 26.546, "v4": -4.141, "amplitude": 38.180, "phase_angle": 167.405, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 175.875, 174.302, 166.881 ], "x_axis": [ 0.849, -0.178, 0.498 ], "y_axis": [ 0.528, 0.305, -0.792 ], "z_axis": [ -0.011, 0.936, 0.353 ], "quaternion": [ 0.792, -0.546, -0.161, -0.223 ] } }, { "index": 876, "index_chain": 876, "chain_name": "A", "nt_resnum": 878, "nt_name": "G", "nt_code": "G", "nt_id": "///A/878", "linked_nts": [ "///A/877", "///A/879" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -38.769, "beta": 163.275, "gamma": 52.780, "delta": 83.594, "epsilon": -166.681, "zeta": -87.577, "epsilon_zeta": -79.104, "bb_type": "BI", "chi": -163.283, "glyco_bond": "anti", "C5prime_xyz": [ -0.982, 8.564, 0.754 ], "P_xyz": [ 1.630, 8.506, 0.740 ], "form": "A", "ssZp": 4.463, "Dp": 4.538, "splay_angle": 21.517, "splay_distance": 3.309, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": -149.578, "theta": -131.394, "eta_prime": -122.784, "theta_prime": -139.314, "eta_base": -113.772, "theta_base": -113.503, "v0": 7.337, "v1": -27.719, "v2": 36.505, "v3": -33.279, "v4": 16.402, "amplitude": 36.813, "phase_angle": 7.417, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4a", "suiteness": 0.019, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 176.985, 182.644, 150.948 ], "x_axis": [ 0.302, -0.897, -0.324 ], "y_axis": [ -0.228, -0.398, 0.889 ], "z_axis": [ -0.926, -0.194, -0.325 ], "quaternion": [ 0.380, 0.711, -0.395, -0.439 ] } }, { "index": 877, "index_chain": 877, "chain_name": "A", "nt_resnum": 879, "nt_name": "G", "nt_code": "G", "nt_id": "///A/879", "linked_nts": [ "///A/878", "///A/880" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop", "alpha": 170.770, "beta": -139.055, "gamma": 147.201, "delta": 83.621, "epsilon": -134.700, "zeta": -82.777, "epsilon_zeta": -51.922, "bb_type": "BI", "chi": 174.077, "glyco_bond": "anti", "C5prime_xyz": [ -1.469, 8.174, 2.008 ], "P_xyz": [ 0.939, 8.850, 1.258 ], "form": "A", "ssZp": 4.662, "Dp": 4.696, "splay_angle": 25.453, "splay_distance": 3.951, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 156.518, "theta": -144.744, "eta_prime": 176.514, "theta_prime": -148.351, "eta_base": -132.638, "theta_base": -130.201, "v0": 4.788, "v1": -25.389, "v2": 35.227, "v3": -33.509, "v4": 18.139, "amplitude": 35.912, "phase_angle": 11.202, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 174.822, 181.620, 148.663 ], "x_axis": [ 0.247, -0.928, 0.279 ], "y_axis": [ -0.400, 0.165, 0.902 ], "z_axis": [ -0.883, -0.334, -0.331 ], "quaternion": [ 0.520, 0.594, -0.559, -0.254 ] } }, { "index": 878, "index_chain": 878, "chain_name": "A", "nt_resnum": 880, "nt_name": "C", "nt_code": "C", "nt_id": "///A/880", "linked_nts": [ "///A/879", "///A/881" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -52.339, "beta": 176.853, "gamma": 42.029, "delta": 84.033, "epsilon": -147.368, "zeta": -78.479, "epsilon_zeta": -68.889, "bb_type": "BI", "chi": -165.279, "glyco_bond": "anti", "C5prime_xyz": [ -1.314, 8.659, 0.867 ], "P_xyz": [ 1.133, 8.955, 1.724 ], "form": "A", "ssZp": 4.452, "Dp": 4.579, "splay_angle": 22.645, "splay_distance": 3.633, "splay_ratio": 0.198, "d22": 4.500, "d64": 4.574, "eta": 172.338, "theta": -148.147, "eta_prime": -176.523, "theta_prime": -145.725, "eta_base": -143.208, "theta_base": -128.281, "v0": 2.285, "v1": -23.254, "v2": 34.136, "v3": -33.860, "v4": 19.912, "amplitude": 35.347, "phase_angle": 15.042, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.626, "filter_rmsd": 0.063, "frame": { "rmsd": 0.005, "origin": [ 172.906, 179.873, 145.681 ], "x_axis": [ 0.044, -0.639, 0.768 ], "y_axis": [ -0.447, 0.675, 0.587 ], "z_axis": [ -0.893, -0.369, -0.256 ], "quaternion": [ 0.605, 0.395, -0.687, -0.079 ] } }, { "index": 879, "index_chain": 879, "chain_name": "A", "nt_resnum": 881, "nt_name": "U", "nt_code": "U", "nt_id": "///A/881", "linked_nts": [ "///A/880", "///A/882" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -63.267, "beta": 166.372, "gamma": 57.536, "delta": 81.109, "epsilon": -149.186, "zeta": -63.434, "epsilon_zeta": -85.752, "bb_type": "BI", "chi": -162.954, "glyco_bond": "anti", "C5prime_xyz": [ -1.606, 8.758, 0.677 ], "P_xyz": [ 0.940, 9.329, 0.774 ], "form": "A", "ssZp": 4.425, "Dp": 4.547, "splay_angle": 26.695, "splay_distance": 4.295, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 168.476, "theta": -136.382, "eta_prime": -178.501, "theta_prime": -138.024, "eta_base": -148.817, "theta_base": -104.537, "v0": -1.350, "v1": -21.218, "v2": 34.349, "v3": -36.113, "v4": 23.605, "amplitude": 36.708, "phase_angle": 20.655, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.922, "filter_rmsd": 0.099, "frame": { "rmsd": 0.009, "origin": [ 170.801, 177.584, 143.804 ], "x_axis": [ -0.111, -0.259, 0.959 ], "y_axis": [ -0.471, 0.864, 0.179 ], "z_axis": [ -0.875, -0.432, -0.218 ], "quaternion": [ 0.619, 0.246, -0.740, 0.085 ] } }, { "index": 880, "index_chain": 880, "chain_name": "A", "nt_resnum": 882, "nt_name": "A", "nt_code": "A", "nt_id": "///A/882", "linked_nts": [ "///A/881", "///A/883" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -72.326, "beta": 172.151, "gamma": 57.732, "delta": 77.780, "epsilon": -146.443, "zeta": -65.776, "epsilon_zeta": -80.667, "bb_type": "BI", "chi": -175.973, "glyco_bond": "anti", "C5prime_xyz": [ -1.833, 8.569, 1.388 ], "P_xyz": [ 0.619, 9.298, 1.898 ], "form": ".", "ssZp": 4.668, "Dp": 4.650, "splay_angle": 28.950, "splay_distance": 4.481, "splay_ratio": 0.253, "d22": null, "d64": null, "eta": 161.835, "theta": -140.364, "eta_prime": 179.250, "theta_prime": -138.063, "eta_base": -126.467, "theta_base": -96.818, "v0": -1.277, "v1": -22.712, "v2": 36.666, "v3": -38.446, "v4": 25.030, "amplitude": 39.128, "phase_angle": 20.433, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.896, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 167.731, 174.755, 144.816 ], "x_axis": [ -0.167, 0.425, 0.890 ], "y_axis": [ -0.199, 0.869, -0.453 ], "z_axis": [ -0.966, -0.252, -0.060 ], "quaternion": [ 0.641, -0.078, -0.724, 0.243 ] } }, { "index": 881, "index_chain": 881, "chain_name": "A", "nt_resnum": 883, "nt_name": "G", "nt_code": "G", "nt_id": "///A/883", "linked_nts": [ "///A/882", "///A/884" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -68.902, "beta": 172.541, "gamma": 59.706, "delta": 79.177, "epsilon": -116.740, "zeta": -83.826, "epsilon_zeta": -32.913, "bb_type": "--", "chi": -178.206, "glyco_bond": "anti", "C5prime_xyz": [ -1.510, 8.513, 1.542 ], "P_xyz": [ 1.024, 8.941, 2.021 ], "form": "A", "ssZp": 4.728, "Dp": 4.774, "splay_angle": 25.894, "splay_distance": 3.964, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 173.861, "theta": -136.459, "eta_prime": -171.411, "theta_prime": -134.465, "eta_base": -114.661, "theta_base": -90.233, "v0": 2.062, "v1": -25.113, "v2": 37.346, "v3": -37.164, "v4": 22.143, "amplitude": 38.778, "phase_angle": 15.618, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.893, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 163.970, 174.048, 147.148 ], "x_axis": [ -0.206, 0.934, 0.293 ], "y_axis": [ 0.087, 0.316, -0.945 ], "z_axis": [ -0.975, -0.170, -0.146 ], "quaternion": [ -0.491, 0.395, 0.646, -0.431 ] } }, { "index": 882, "index_chain": 882, "chain_name": "A", "nt_resnum": 884, "nt_name": "C", "nt_code": "C", "nt_id": "///A/884", "linked_nts": [ "///A/883", "///A/885" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor,ribose-zipper", "alpha": -77.826, "beta": 146.390, "gamma": 75.113, "delta": 79.503, "epsilon": -117.565, "zeta": -83.435, "epsilon_zeta": -34.131, "bb_type": "--", "chi": 178.716, "glyco_bond": "anti", "C5prime_xyz": [ -1.212, 8.356, 1.733 ], "P_xyz": [ 1.307, 8.729, 1.139 ], "form": ".", "ssZp": 4.834, "Dp": 4.833, "splay_angle": 45.087, "splay_distance": 6.861, "splay_ratio": 0.385, "d22": 5.511, "d64": 6.134, "eta": 158.994, "theta": -131.473, "eta_prime": 176.225, "theta_prime": -128.814, "eta_base": -121.867, "theta_base": -106.732, "v0": 5.212, "v1": -28.211, "v2": 39.246, "v3": -37.203, "v4": 20.189, "amplitude": 40.011, "phase_angle": 11.224, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.121, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 160.266, 175.382, 147.612 ], "x_axis": [ 0.049, 0.890, -0.453 ], "y_axis": [ 0.157, -0.454, -0.877 ], "z_axis": [ -0.986, -0.028, -0.162 ], "quaternion": [ -0.329, 0.645, 0.406, -0.558 ] } }, { "index": 883, "index_chain": 883, "chain_name": "A", "nt_resnum": 885, "nt_name": "C", "nt_code": "C", "nt_id": "///A/885", "linked_nts": [ "///A/884", "///A/886" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,ribose-zipper", "alpha": -70.744, "beta": -178.552, "gamma": 69.814, "delta": 79.511, "epsilon": -150.356, "zeta": -67.458, "epsilon_zeta": -82.899, "bb_type": "BI", "chi": -168.127, "glyco_bond": "anti", "C5prime_xyz": [ -1.310, 8.693, 0.986 ], "P_xyz": [ 1.269, 9.131, 1.051 ], "form": "A", "ssZp": 4.622, "Dp": 4.660, "splay_angle": 23.593, "splay_distance": 3.660, "splay_ratio": 0.206, "d22": 3.977, "d64": 4.076, "eta": 177.144, "theta": -142.978, "eta_prime": -168.718, "theta_prime": -142.317, "eta_base": -131.676, "theta_base": -108.197, "v0": 1.997, "v1": -25.033, "v2": 37.285, "v3": -37.069, "v4": 22.134, "amplitude": 38.723, "phase_angle": 15.662, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.311, "filter_rmsd": 0.062, "frame": { "rmsd": 0.006, "origin": [ 154.088, 178.008, 146.190 ], "x_axis": [ 0.362, 0.343, -0.867 ], "y_axis": [ 0.301, -0.923, -0.240 ], "z_axis": [ -0.882, -0.175, -0.437 ], "quaternion": [ -0.020, 0.825, 0.195, -0.530 ] } }, { "index": 884, "index_chain": 884, "chain_name": "A", "nt_resnum": 886, "nt_name": "U", "nt_code": "U", "nt_id": "///A/886", "linked_nts": [ "///A/885", "///A/887" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -71.492, "beta": 169.989, "gamma": 64.251, "delta": 81.392, "epsilon": -152.225, "zeta": -72.427, "epsilon_zeta": -79.797, "bb_type": "BI", "chi": -169.516, "glyco_bond": "anti", "C5prime_xyz": [ -1.339, 8.596, 1.082 ], "P_xyz": [ 1.252, 8.955, 1.159 ], "form": "A", "ssZp": 4.578, "Dp": 4.612, "splay_angle": 19.810, "splay_distance": 3.276, "splay_ratio": 0.180, "d22": 4.709, "d64": 4.761, "eta": 167.651, "theta": -147.087, "eta_prime": -174.456, "theta_prime": -148.528, "eta_base": -121.306, "theta_base": -141.866, "v0": 2.408, "v1": -24.557, "v2": 36.142, "v3": -35.745, "v4": 21.032, "amplitude": 37.418, "phase_angle": 15.004, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.773, "filter_rmsd": 0.102, "frame": { "rmsd": 0.007, "origin": [ 151.609, 179.015, 143.694 ], "x_axis": [ 0.510, -0.295, -0.808 ], "y_axis": [ -0.028, -0.944, 0.327 ], "z_axis": [ -0.860, -0.144, -0.490 ], "quaternion": [ 0.137, 0.858, -0.094, -0.486 ] } }, { "index": 885, "index_chain": 885, "chain_name": "A", "nt_resnum": 887, "nt_name": "C", "nt_code": "C", "nt_id": "///A/887", "linked_nts": [ "///A/886", "///A/888" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -71.564, "beta": -178.153, "gamma": 53.726, "delta": 81.478, "epsilon": -154.739, "zeta": -72.219, "epsilon_zeta": -82.520, "bb_type": "BI", "chi": -153.148, "glyco_bond": "anti", "C5prime_xyz": [ -1.566, 8.846, 0.089 ], "P_xyz": [ 0.937, 9.544, 0.309 ], "form": "A", "ssZp": 4.184, "Dp": 4.511, "splay_angle": 22.740, "splay_distance": 3.708, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 167.522, "theta": -150.213, "eta_prime": 177.608, "theta_prime": -150.582, "eta_base": -162.835, "theta_base": -127.731, "v0": -1.537, "v1": -20.836, "v2": 33.927, "v3": -35.783, "v4": 23.535, "amplitude": 36.333, "phase_angle": 20.970, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.938, "filter_rmsd": 0.058, "frame": { "rmsd": 0.008, "origin": [ 149.537, 180.870, 141.961 ], "x_axis": [ 0.530, -0.660, -0.532 ], "y_axis": [ -0.414, -0.750, 0.517 ], "z_axis": [ -0.740, -0.054, -0.670 ], "quaternion": [ 0.166, 0.859, -0.312, -0.370 ] } }, { "index": 886, "index_chain": 886, "chain_name": "A", "nt_resnum": 888, "nt_name": "A", "nt_code": "A", "nt_id": "///A/888", "linked_nts": [ "///A/887", "///A/889" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.679, "beta": 171.264, "gamma": 53.552, "delta": 79.613, "epsilon": -155.163, "zeta": -74.472, "epsilon_zeta": -80.691, "bb_type": "BI", "chi": -166.019, "glyco_bond": "anti", "C5prime_xyz": [ -1.640, 8.748, 0.841 ], "P_xyz": [ 0.845, 9.414, 1.287 ], "form": "A", "ssZp": 4.443, "Dp": 4.518, "splay_angle": 21.499, "splay_distance": 3.389, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 164.380, "theta": -152.884, "eta_prime": 176.609, "theta_prime": -151.901, "eta_base": -146.845, "theta_base": -125.771, "v0": -1.745, "v1": -21.216, "v2": 34.755, "v3": -36.755, "v4": 24.300, "amplitude": 37.289, "phase_angle": 21.245, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.964, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 147.806, 181.141, 138.693 ], "x_axis": [ 0.488, -0.873, 0.003 ], "y_axis": [ -0.601, -0.333, 0.726 ], "z_axis": [ -0.633, -0.356, -0.687 ], "quaternion": [ 0.342, 0.792, -0.465, -0.199 ] } }, { "index": 887, "index_chain": 887, "chain_name": "A", "nt_resnum": 889, "nt_name": "A", "nt_code": "A", "nt_id": "///A/889", "linked_nts": [ "///A/888", "///A/890" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -60.976, "beta": 178.056, "gamma": 43.615, "delta": 81.576, "epsilon": -168.313, "zeta": -83.600, "epsilon_zeta": -84.713, "bb_type": "BI", "chi": -160.062, "glyco_bond": "anti", "C5prime_xyz": [ -1.298, 8.669, 0.535 ], "P_xyz": [ 1.231, 9.078, 1.072 ], "form": "A", "ssZp": 4.383, "Dp": 4.485, "splay_angle": 21.641, "splay_distance": 3.596, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 164.884, "theta": -135.193, "eta_prime": 176.811, "theta_prime": -140.596, "eta_base": -143.470, "theta_base": -118.510, "v0": 2.692, "v1": -24.438, "v2": 35.788, "v3": -35.232, "v4": 20.501, "amplitude": 36.975, "phase_angle": 14.558, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.799, "filter_rmsd": 0.040, "frame": { "rmsd": 0.008, "origin": [ 146.953, 180.217, 135.546 ], "x_axis": [ 0.138, -0.871, 0.471 ], "y_axis": [ -0.802, 0.181, 0.569 ], "z_axis": [ -0.581, -0.456, -0.674 ], "quaternion": [ -0.402, -0.639, 0.655, 0.043 ] } }, { "index": 888, "index_chain": 888, "chain_name": "A", "nt_resnum": 890, "nt_name": "G", "nt_code": "G", "nt_id": "///A/890", "linked_nts": [ "///A/889", "///A/891" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 159.851, "beta": -145.127, "gamma": 165.248, "delta": 82.089, "epsilon": -138.960, "zeta": -68.535, "epsilon_zeta": -70.425, "bb_type": "BI", "chi": 178.171, "glyco_bond": "anti", "C5prime_xyz": [ -1.513, 8.368, 1.772 ], "P_xyz": [ 0.516, 9.670, 0.767 ], "form": ".", "ssZp": 4.650, "Dp": 4.671, "splay_angle": 27.363, "splay_distance": 4.451, "splay_ratio": 0.245, "d22": null, "d64": null, "eta": 162.903, "theta": -147.936, "eta_prime": -179.052, "theta_prime": -148.156, "eta_base": -136.607, "theta_base": -126.473, "v0": 2.557, "v1": -24.044, "v2": 35.202, "v3": -34.732, "v4": 20.278, "amplitude": 36.392, "phase_angle": 14.693, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.533, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 146.835, 177.648, 133.032 ], "x_axis": [ -0.230, -0.651, 0.724 ], "y_axis": [ -0.812, 0.539, 0.226 ], "z_axis": [ -0.537, -0.535, -0.652 ], "quaternion": [ -0.405, -0.470, 0.778, -0.099 ] } }, { "index": 889, "index_chain": 889, "chain_name": "A", "nt_resnum": 891, "nt_name": "G", "nt_code": "G", "nt_id": "///A/891", "linked_nts": [ "///A/890", "///A/892" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -62.243, "beta": -166.055, "gamma": 46.431, "delta": 80.312, "epsilon": -93.973, "zeta": -122.694, "epsilon_zeta": 28.721, "bb_type": "--", "chi": -138.712, "glyco_bond": "anti", "C5prime_xyz": [ -1.622, 8.751, -0.772 ], "P_xyz": [ 0.844, 9.619, -0.706 ], "form": ".", "ssZp": 2.756, "Dp": 4.657, "splay_angle": 36.555, "splay_distance": 6.345, "splay_ratio": 0.314, "d22": null, "d64": null, "eta": -170.225, "theta": -107.808, "eta_prime": -161.879, "theta_prime": -98.306, "eta_base": -135.996, "theta_base": -79.201, "v0": -0.045, "v1": -22.708, "v2": 35.504, "v3": -36.520, "v4": 23.051, "amplitude": 37.475, "phase_angle": 18.663, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.758, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 146.411, 173.719, 130.984 ], "x_axis": [ -0.719, -0.306, 0.624 ], "y_axis": [ -0.603, 0.720, -0.342 ], "z_axis": [ -0.345, -0.622, -0.703 ], "quaternion": [ -0.273, -0.256, 0.886, -0.272 ] } }, { "index": 890, "index_chain": 890, "chain_name": "A", "nt_resnum": 892, "nt_name": "U", "nt_code": "U", "nt_id": "///A/892", "linked_nts": [ "///A/891", "///A/893" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-canonical,multiplet,internal-loop", "alpha": 91.081, "beta": -71.364, "gamma": -145.262, "delta": 78.933, "epsilon": -165.992, "zeta": -75.723, "epsilon_zeta": -90.269, "bb_type": "BI", "chi": -160.303, "glyco_bond": "anti", "C5prime_xyz": [ -1.679, 8.784, 0.495 ], "P_xyz": [ -2.475, 9.715, -1.820 ], "form": "A", "ssZp": 4.424, "Dp": 4.512, "splay_angle": 24.180, "splay_distance": 3.760, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": -135.103, "theta": 127.884, "eta_prime": -127.798, "theta_prime": 162.755, "eta_base": -97.577, "theta_base": 177.878, "v0": -0.677, "v1": -23.163, "v2": 36.803, "v3": -38.179, "v4": 24.474, "amplitude": 39.048, "phase_angle": 19.525, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.005, "origin": [ 140.455, 171.530, 131.075 ], "x_axis": [ -0.969, -0.033, 0.247 ], "y_axis": [ -0.206, 0.661, -0.721 ], "z_axis": [ -0.139, -0.750, -0.647 ], "quaternion": [ -0.107, -0.066, 0.905, -0.406 ] } }, { "index": 891, "index_chain": 891, "chain_name": "A", "nt_resnum": 893, "nt_name": "A", "nt_code": "A", "nt_id": "///A/893", "linked_nts": [ "///A/892", "///A/894" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,cap-donor", "alpha": -69.479, "beta": -165.270, "gamma": 66.314, "delta": 149.421, "epsilon": -123.775, "zeta": 108.754, "epsilon_zeta": 127.471, "bb_type": "--", "chi": -128.569, "glyco_bond": "anti", "C5prime_xyz": [ -1.728, 8.584, -0.683 ], "P_xyz": [ 0.617, 9.100, 0.390 ], "form": ".", "ssZp": 1.450, "Dp": 1.439, "splay_angle": 43.870, "splay_distance": 7.087, "splay_ratio": 0.379, "d22": null, "d64": null, "eta": -164.253, "theta": 138.323, "eta_prime": -144.765, "theta_prime": 93.077, "eta_base": -140.433, "theta_base": 61.469, "v0": -18.806, "v1": 34.179, "v2": -35.683, "v3": 25.727, "v4": -4.544, "amplitude": 36.438, "phase_angle": 168.314, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.583, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 140.726, 167.899, 130.139 ], "x_axis": [ -0.811, 0.548, 0.205 ], "y_axis": [ 0.152, 0.535, -0.831 ], "z_axis": [ -0.565, -0.643, -0.517 ], "quaternion": [ -0.227, 0.207, 0.846, -0.436 ] } }, { "index": 892, "index_chain": 892, "chain_name": "A", "nt_resnum": 894, "nt_name": "A", "nt_code": "A", "nt_id": "///A/894", "linked_nts": [ "///A/893", "///A/895" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-acceptor", "alpha": 67.861, "beta": -135.752, "gamma": 174.925, "delta": 82.905, "epsilon": -110.327, "zeta": -42.564, "epsilon_zeta": -67.762, "bb_type": "--", "chi": -106.129, "glyco_bond": "anti", "C5prime_xyz": [ -2.063, 7.914, -2.407 ], "P_xyz": [ -1.811, 7.043, -4.859 ], "form": ".", "ssZp": 0.719, "Dp": 4.669, "splay_angle": 73.247, "splay_distance": 11.690, "splay_ratio": 0.598, "d22": null, "d64": null, "eta": 144.557, "theta": -103.736, "eta_prime": 133.959, "theta_prime": -100.288, "eta_base": 118.515, "theta_base": -77.638, "v0": 0.657, "v1": -22.090, "v2": 33.916, "v3": -34.489, "v4": 21.333, "amplitude": 35.578, "phase_angle": 17.582, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "0i", "suiteness": 0.217, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 144.950, 173.333, 128.448 ], "x_axis": [ -0.169, -0.644, 0.746 ], "y_axis": [ 0.620, -0.658, -0.428 ], "z_axis": [ 0.766, 0.390, 0.510 ], "quaternion": [ -0.413, 0.495, -0.012, 0.764 ] } }, { "index": 893, "index_chain": 893, "chain_name": "A", "nt_resnum": 895, "nt_name": "G", "nt_code": "G", "nt_id": "///A/895", "linked_nts": [ "///A/894", "///A/896" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -67.260, "beta": -162.966, "gamma": 52.097, "delta": 81.286, "epsilon": -176.156, "zeta": -76.766, "epsilon_zeta": -99.390, "bb_type": "BI", "chi": -179.783, "glyco_bond": "anti", "C5prime_xyz": [ -1.789, 8.513, 1.640 ], "P_xyz": [ 0.317, 8.798, 3.165 ], "form": "A", "ssZp": 4.162, "Dp": 4.302, "splay_angle": 24.885, "splay_distance": 3.789, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 163.792, "theta": -134.437, "eta_prime": -158.965, "theta_prime": -131.601, "eta_base": -120.225, "theta_base": -86.197, "v0": -1.142, "v1": -21.173, "v2": 34.199, "v3": -35.801, "v4": 23.299, "amplitude": 36.479, "phase_angle": 20.365, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.148, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 147.098, 161.845, 128.701 ], "x_axis": [ -0.690, -0.016, -0.723 ], "y_axis": [ 0.353, 0.865, -0.356 ], "z_axis": [ 0.632, -0.501, -0.592 ], "quaternion": [ 0.382, 0.095, 0.887, -0.241 ] } }, { "index": 894, "index_chain": 894, "chain_name": "A", "nt_resnum": 896, "nt_name": "A", "nt_code": "A", "nt_id": "///A/896", "linked_nts": [ "///A/895", "///A/897" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -168.529, "beta": -125.497, "gamma": 121.263, "delta": 78.188, "epsilon": -126.128, "zeta": -109.008, "epsilon_zeta": -17.120, "bb_type": "--", "chi": -175.922, "glyco_bond": "anti", "C5prime_xyz": [ -1.943, 8.665, 1.376 ], "P_xyz": [ 0.656, 8.864, 1.343 ], "form": "A", "ssZp": 4.462, "Dp": 4.546, "splay_angle": 24.203, "splay_distance": 3.834, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 163.057, "theta": -146.541, "eta_prime": -178.527, "theta_prime": -147.818, "eta_base": -118.979, "theta_base": -125.617, "v0": -4.790, "v1": -18.906, "v2": 34.058, "v3": -37.831, "v4": 26.819, "amplitude": 37.809, "phase_angle": 25.739, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.045, "frame": { "rmsd": 0.010, "origin": [ 147.835, 159.358, 125.938 ], "x_axis": [ -0.212, 0.609, -0.764 ], "y_axis": [ 0.704, 0.637, 0.313 ], "z_axis": [ 0.678, -0.472, -0.564 ], "quaternion": [ 0.464, 0.423, 0.777, -0.051 ] } }, { "index": 895, "index_chain": 895, "chain_name": "A", "nt_resnum": 897, "nt_name": "G", "nt_code": "G", "nt_id": "///A/897", "linked_nts": [ "///A/896", "///A/898" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -28.050, "beta": 144.595, "gamma": 32.442, "delta": 81.767, "epsilon": -148.405, "zeta": -118.122, "epsilon_zeta": -30.283, "bb_type": "BI", "chi": -170.702, "glyco_bond": "anti", "C5prime_xyz": [ -1.760, 8.759, 1.124 ], "P_xyz": [ 0.660, 8.967, 2.067 ], "form": "A", "ssZp": 4.342, "Dp": 4.426, "splay_angle": 21.397, "splay_distance": 3.388, "splay_ratio": 0.186, "d22": null, "d64": null, "eta": 167.552, "theta": -138.445, "eta_prime": 177.945, "theta_prime": -143.247, "eta_base": -145.337, "theta_base": -119.342, "v0": -3.961, "v1": -18.178, "v2": 32.078, "v3": -35.315, "v4": 24.754, "amplitude": 35.369, "phase_angle": 24.912, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.010, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 149.226, 156.866, 123.378 ], "x_axis": [ -0.013, 0.952, -0.306 ], "y_axis": [ 0.635, 0.244, 0.733 ], "z_axis": [ 0.773, -0.185, -0.607 ], "quaternion": [ 0.395, 0.581, 0.683, 0.201 ] } }, { "index": 896, "index_chain": 896, "chain_name": "A", "nt_resnum": 898, "nt_name": "U", "nt_code": "U", "nt_id": "///A/898", "linked_nts": [ "///A/897", "///A/899" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 148.297, "beta": -123.240, "gamma": 163.607, "delta": 81.420, "epsilon": -113.579, "zeta": -97.243, "epsilon_zeta": -16.336, "bb_type": "--", "chi": 176.580, "glyco_bond": "anti", "C5prime_xyz": [ -1.575, 8.389, 1.838 ], "P_xyz": [ 0.700, 9.142, 0.808 ], "form": "A", "ssZp": 4.505, "Dp": 4.606, "splay_angle": 18.406, "splay_distance": 2.870, "splay_ratio": 0.160, "d22": 4.674, "d64": 3.989, "eta": 162.126, "theta": -152.206, "eta_prime": 174.793, "theta_prime": -156.585, "eta_base": -146.881, "theta_base": -135.423, "v0": 0.507, "v1": -22.604, "v2": 34.893, "v3": -35.578, "v4": 22.125, "amplitude": 36.658, "phase_angle": 17.855, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.109, "frame": { "rmsd": 0.010, "origin": [ 150.781, 156.043, 120.483 ], "x_axis": [ 0.245, 0.952, 0.184 ], "y_axis": [ 0.589, -0.297, 0.751 ], "z_axis": [ 0.770, -0.076, -0.634 ], "quaternion": [ 0.280, 0.738, 0.522, 0.323 ] } }, { "index": 897, "index_chain": 897, "chain_name": "A", "nt_resnum": 899, "nt_name": "C", "nt_code": "C", "nt_id": "///A/899", "linked_nts": [ "///A/898", "///A/900" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -68.572, "beta": 148.712, "gamma": 58.885, "delta": 82.332, "epsilon": -156.593, "zeta": -66.205, "epsilon_zeta": -90.387, "bb_type": "BI", "chi": -167.704, "glyco_bond": "anti", "C5prime_xyz": [ -1.276, 8.667, 0.944 ], "P_xyz": [ 1.316, 8.798, 0.688 ], "form": ".", "ssZp": 4.490, "Dp": 4.557, "splay_angle": 13.880, "splay_distance": 2.105, "splay_ratio": 0.123, "d22": 5.062, "d64": 3.814, "eta": 151.145, "theta": -133.079, "eta_prime": 167.812, "theta_prime": -126.413, "eta_base": -151.807, "theta_base": -179.702, "v0": 1.638, "v1": -23.519, "v2": 35.159, "v3": -35.255, "v4": 21.209, "amplitude": 36.601, "phase_angle": 16.137, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.803, "filter_rmsd": 0.067, "frame": { "rmsd": 0.009, "origin": [ 152.107, 156.019, 117.938 ], "x_axis": [ 0.476, 0.616, 0.628 ], "y_axis": [ 0.459, -0.783, 0.420 ], "z_axis": [ 0.750, 0.088, -0.656 ], "quaternion": [ 0.097, 0.854, 0.315, 0.403 ] } }, { "index": 898, "index_chain": 898, "chain_name": "A", "nt_resnum": 900, "nt_name": "U", "nt_code": "U", "nt_id": "///A/900", "linked_nts": [ "///A/899", "///A/901" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-canonical,non-pair-contact,internal-loop,cap-donor", "alpha": -106.674, "beta": -125.335, "gamma": 59.424, "delta": 146.194, "epsilon": -0.124, "zeta": 173.989, "epsilon_zeta": 185.887, "bb_type": "--", "chi": -57.806, "glyco_bond": "--", "C5prime_xyz": [ -3.035, 6.269, -3.246 ], "P_xyz": [ -0.759, 7.338, -3.992 ], "form": ".", "ssZp": -0.028, "Dp": 0.591, "splay_angle": 60.588, "splay_distance": 8.819, "splay_ratio": 0.506, "d22": 3.754, "d64": 2.981, "eta": -178.892, "theta": -84.961, "eta_prime": -140.621, "theta_prime": -148.807, "eta_base": 164.555, "theta_base": -73.697, "v0": -17.097, "v1": 31.166, "v2": -32.596, "v3": 23.496, "v4": -4.189, "amplitude": 33.275, "phase_angle": 168.408, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.031, "filter_rmsd": 0.100, "frame": { "rmsd": 0.013, "origin": [ 151.972, 155.791, 115.849 ], "x_axis": [ 0.286, 0.319, 0.904 ], "y_axis": [ 0.899, -0.417, -0.137 ], "z_axis": [ 0.332, 0.851, -0.406 ], "quaternion": [ -0.340, 0.726, 0.419, 0.426 ] } }, { "index": 899, "index_chain": 899, "chain_name": "A", "nt_resnum": 901, "nt_name": "U", "nt_code": "U", "nt_id": "///A/901", "linked_nts": [ "///A/900", "///A/902" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor", "alpha": -20.840, "beta": -99.289, "gamma": -175.335, "delta": 77.798, "epsilon": -87.460, "zeta": -129.115, "epsilon_zeta": 41.656, "bb_type": "--", "chi": 90.102, "glyco_bond": "--", "C5prime_xyz": [ -4.608, 5.266, 2.829 ], "P_xyz": [ -3.023, 6.266, 4.628 ], "form": ".", "ssZp": 0.803, "Dp": 4.444, "splay_angle": 28.043, "splay_distance": 4.956, "splay_ratio": 0.272, "d22": null, "d64": null, "eta": 111.472, "theta": -147.308, "eta_prime": 137.178, "theta_prime": -153.684, "eta_base": -144.368, "theta_base": 171.009, "v0": -2.357, "v1": -21.075, "v2": 35.223, "v3": -37.637, "v4": 25.154, "amplitude": 38.022, "phase_angle": 22.125, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.110, "frame": { "rmsd": 0.012, "origin": [ 160.753, 156.074, 115.075 ], "x_axis": [ -0.573, 0.227, 0.787 ], "y_axis": [ -0.806, 0.019, -0.592 ], "z_axis": [ -0.150, -0.974, 0.172 ], "quaternion": [ 0.393, 0.243, -0.596, 0.657 ] } }, { "index": 900, "index_chain": 900, "chain_name": "A", "nt_resnum": 902, "nt_name": "G", "nt_code": "G", "nt_id": "///A/902", "linked_nts": [ "///A/901", "///A/903" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 80.391, "beta": -95.729, "gamma": -145.726, "delta": 81.051, "epsilon": -130.990, "zeta": -87.078, "epsilon_zeta": -43.912, "bb_type": "BI", "chi": 175.617, "glyco_bond": "anti", "C5prime_xyz": [ -1.275, 8.215, 1.919 ], "P_xyz": [ -0.814, 10.239, 0.343 ], "form": ".", "ssZp": 4.777, "Dp": 4.771, "splay_angle": 25.742, "splay_distance": 3.830, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 179.601, "theta": -147.224, "eta_prime": -169.954, "theta_prime": -141.101, "eta_base": 174.346, "theta_base": -78.367, "v0": 6.242, "v1": -28.002, "v2": 38.138, "v3": -35.530, "v4": 18.439, "amplitude": 38.673, "phase_angle": 9.539, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 164.071, 159.731, 115.497 ], "x_axis": [ 0.177, -0.767, 0.617 ], "y_axis": [ -0.259, -0.641, -0.722 ], "z_axis": [ 0.949, -0.032, -0.313 ], "quaternion": [ -0.236, 0.730, -0.351, 0.537 ] } }, { "index": 901, "index_chain": 901, "chain_name": "A", "nt_resnum": 903, "nt_name": "G", "nt_code": "G", "nt_id": "///A/903", "linked_nts": [ "///A/902", "///A/904" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 77.601, "beta": 132.027, "gamma": -58.706, "delta": 147.885, "epsilon": -179.301, "zeta": -108.083, "epsilon_zeta": -71.218, "bb_type": "BI", "chi": 76.427, "glyco_bond": "syn", "C5prime_xyz": [ -5.338, 4.889, 1.715 ], "P_xyz": [ -7.731, 4.030, 1.039 ], "form": ".", "ssZp": -2.434, "Dp": 2.373, "splay_angle": 28.884, "splay_distance": 4.671, "splay_ratio": 0.249, "d22": null, "d64": null, "eta": 153.955, "theta": -168.346, "eta_prime": -177.603, "theta_prime": -170.618, "eta_base": -99.554, "theta_base": -171.729, "v0": -27.722, "v1": 42.105, "v2": -39.327, "v3": 24.318, "v4": 1.918, "amplitude": 42.239, "phase_angle": 158.603, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "7r", "suiteness": 0.109, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 165.956, 156.502, 116.327 ], "x_axis": [ 0.098, 0.265, 0.959 ], "y_axis": [ 0.538, 0.797, -0.275 ], "z_axis": [ -0.837, 0.544, -0.064 ], "quaternion": [ 0.676, -0.303, -0.664, -0.101 ] } }, { "index": 902, "index_chain": 902, "chain_name": "A", "nt_resnum": 904, "nt_name": "A", "nt_code": "A", "nt_id": "///A/904", "linked_nts": [ "///A/903", "///A/905" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate", "alpha": -76.913, "beta": 174.753, "gamma": 49.609, "delta": 82.103, "epsilon": -154.597, "zeta": -64.278, "epsilon_zeta": -90.318, "bb_type": "BI", "chi": -144.202, "glyco_bond": "anti", "C5prime_xyz": [ -1.286, 8.763, -0.418 ], "P_xyz": [ 1.274, 9.285, -0.488 ], "form": "A", "ssZp": 3.856, "Dp": 4.506, "splay_angle": 28.566, "splay_distance": 4.711, "splay_ratio": 0.247, "d22": null, "d64": null, "eta": 160.394, "theta": -142.741, "eta_prime": 166.028, "theta_prime": -135.446, "eta_base": 172.719, "theta_base": -116.258, "v0": -0.109, "v1": -21.717, "v2": 34.017, "v3": -34.991, "v4": 22.172, "amplitude": 35.925, "phase_angle": 18.758, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.043, "frame": { "rmsd": 0.012, "origin": [ 169.944, 157.147, 118.672 ], "x_axis": [ -0.443, -0.746, -0.497 ], "y_axis": [ 0.298, 0.400, -0.867 ], "z_axis": [ 0.845, -0.533, 0.045 ], "quaternion": [ 0.500, -0.167, 0.671, -0.522 ] } }, { "index": 903, "index_chain": 903, "chain_name": "A", "nt_resnum": 905, "nt_name": "G", "nt_code": "G", "nt_id": "///A/905", "linked_nts": [ "///A/904", "///A/906" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,internal-loop", "alpha": -66.885, "beta": -170.874, "gamma": 55.740, "delta": 143.651, "epsilon": -67.028, "zeta": -156.585, "epsilon_zeta": 89.558, "bb_type": "BII", "chi": -148.622, "glyco_bond": "anti", "C5prime_xyz": [ -1.916, 8.826, 0.290 ], "P_xyz": [ -0.051, 9.465, 2.020 ], "form": ".", "ssZp": 0.166, "Dp": 0.188, "splay_angle": 49.389, "splay_distance": 8.083, "splay_ratio": 0.419, "d22": null, "d64": null, "eta": -152.782, "theta": -102.047, "eta_prime": -131.138, "theta_prime": -110.898, "eta_base": -112.638, "theta_base": -69.806, "v0": -23.766, "v1": 36.600, "v2": -34.774, "v3": 21.964, "v4": 0.927, "amplitude": 37.047, "phase_angle": 159.823, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.858, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 172.690, 153.326, 118.446 ], "x_axis": [ -0.864, 0.110, -0.491 ], "y_axis": [ 0.345, 0.840, -0.418 ], "z_axis": [ 0.366, -0.531, -0.764 ], "quaternion": [ 0.230, 0.122, 0.931, -0.255 ] } }, { "index": 904, "index_chain": 904, "chain_name": "A", "nt_resnum": 906, "nt_name": "G", "nt_code": "G", "nt_id": "///A/906", "linked_nts": [ "///A/905", "///A/907" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop", "alpha": 63.643, "beta": -102.668, "gamma": -150.752, "delta": 149.228, "epsilon": -144.160, "zeta": 142.718, "epsilon_zeta": 73.121, "bb_type": "--", "chi": -121.917, "glyco_bond": "anti", "C5prime_xyz": [ -1.792, 8.571, -1.071 ], "P_xyz": [ -0.807, 8.558, -3.503 ], "form": ".", "ssZp": 1.696, "Dp": 1.731, "splay_angle": 42.357, "splay_distance": 7.112, "splay_ratio": 0.361, "d22": null, "d64": null, "eta": -136.861, "theta": 83.282, "eta_prime": -127.324, "theta_prime": 113.420, "eta_base": -93.519, "theta_base": 112.117, "v0": -20.430, "v1": 35.444, "v2": -36.076, "v3": 25.207, "v4": -3.184, "amplitude": 37.165, "phase_angle": 166.097, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 178.247, 152.001, 112.728 ], "x_axis": [ 0.087, 0.480, -0.873 ], "y_axis": [ 0.615, 0.664, 0.426 ], "z_axis": [ 0.784, -0.574, -0.237 ], "quaternion": [ 0.615, 0.406, 0.673, -0.055 ] } }, { "index": 905, "index_chain": 905, "chain_name": "A", "nt_resnum": 907, "nt_name": "U", "nt_code": "U", "nt_id": "///A/907", "linked_nts": [ "///A/906", "///A/908" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate", "alpha": 17.517, "beta": 118.123, "gamma": -28.494, "delta": 149.504, "epsilon": -139.601, "zeta": -126.787, "epsilon_zeta": -12.814, "bb_type": "--", "chi": -134.457, "glyco_bond": "anti", "C5prime_xyz": [ -1.867, 8.660, -0.385 ], "P_xyz": [ -0.957, 9.678, 1.859 ], "form": ".", "ssZp": 1.867, "Dp": 1.818, "splay_angle": 34.556, "splay_distance": 5.579, "splay_ratio": 0.298, "d22": null, "d64": null, "eta": 167.628, "theta": -145.303, "eta_prime": 160.505, "theta_prime": -150.460, "eta_base": 151.237, "theta_base": -115.572, "v0": -21.456, "v1": 36.888, "v2": -37.273, "v3": 25.706, "v4": -2.850, "amplitude": 38.509, "phase_angle": 165.444, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.006, "origin": [ 175.246, 148.967, 118.417 ], "x_axis": [ -0.185, 0.553, -0.813 ], "y_axis": [ 0.744, 0.619, 0.251 ], "z_axis": [ 0.642, -0.559, -0.526 ], "quaternion": [ 0.476, 0.425, 0.763, -0.101 ] } }, { "index": 906, "index_chain": 906, "chain_name": "A", "nt_resnum": 908, "nt_name": "A", "nt_code": "A", "nt_id": "///A/908", "linked_nts": [ "///A/907", "///A/909" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper", "alpha": -116.421, "beta": 167.889, "gamma": 71.037, "delta": 80.392, "epsilon": -142.433, "zeta": -55.622, "epsilon_zeta": -86.811, "bb_type": "BI", "chi": -162.110, "glyco_bond": "anti", "C5prime_xyz": [ -1.134, 8.659, 0.624 ], "P_xyz": [ 1.415, 8.970, 0.128 ], "form": ".", "ssZp": 4.489, "Dp": 4.717, "splay_angle": 34.890, "splay_distance": 5.253, "splay_ratio": 0.300, "d22": null, "d64": null, "eta": 150.552, "theta": -125.008, "eta_prime": 154.318, "theta_prime": -122.343, "eta_base": -159.352, "theta_base": -71.863, "v0": 3.832, "v1": -26.508, "v2": 37.843, "v3": -36.553, "v4": 20.659, "amplitude": 38.838, "phase_angle": 12.993, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 178.418, 144.410, 117.871 ], "x_axis": [ 0.357, 0.727, -0.587 ], "y_axis": [ 0.442, 0.422, 0.792 ], "z_axis": [ 0.823, -0.542, -0.170 ], "quaternion": [ 0.634, 0.526, 0.556, 0.112 ] } }, { "index": 907, "index_chain": 907, "chain_name": "A", "nt_resnum": 909, "nt_name": "G", "nt_code": "G", "nt_id": "///A/909", "linked_nts": [ "///A/908", "///A/910" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,ribose-zipper", "alpha": -73.249, "beta": 159.676, "gamma": 70.359, "delta": 85.695, "epsilon": -104.855, "zeta": -137.150, "epsilon_zeta": 32.295, "bb_type": "--", "chi": -174.539, "glyco_bond": "anti", "C5prime_xyz": [ -1.111, 8.450, 1.405 ], "P_xyz": [ 1.511, 8.497, 1.216 ], "form": ".", "ssZp": 4.559, "Dp": 4.727, "splay_angle": 22.824, "splay_distance": 3.587, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 174.462, "theta": -124.945, "eta_prime": -158.660, "theta_prime": -127.168, "eta_base": -84.485, "theta_base": -94.063, "v0": 5.724, "v1": -25.860, "v2": 35.123, "v3": -32.710, "v4": 17.093, "amplitude": 35.619, "phase_angle": 9.567, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.448, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 182.962, 146.493, 116.256 ], "x_axis": [ 0.506, 0.760, 0.408 ], "y_axis": [ -0.042, -0.451, 0.891 ], "z_axis": [ 0.862, -0.468, -0.196 ], "quaternion": [ 0.463, 0.734, 0.245, 0.433 ] } }, { "index": 908, "index_chain": 908, "chain_name": "A", "nt_resnum": 910, "nt_name": "A", "nt_code": "A", "nt_id": "///A/910", "linked_nts": [ "///A/909", "///A/911" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 104.930, "beta": -88.250, "gamma": 174.136, "delta": 82.980, "epsilon": -128.988, "zeta": -110.350, "epsilon_zeta": -18.637, "bb_type": "--", "chi": 177.343, "glyco_bond": "anti", "C5prime_xyz": [ -1.470, 8.256, 1.831 ], "P_xyz": [ 0.079, 8.959, -0.166 ], "form": "A", "ssZp": 4.698, "Dp": 4.720, "splay_angle": 27.082, "splay_distance": 4.291, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": 154.103, "theta": -129.778, "eta_prime": -174.393, "theta_prime": -132.695, "eta_base": -115.781, "theta_base": -106.381, "v0": 4.591, "v1": -25.762, "v2": 36.021, "v3": -34.366, "v4": 18.791, "amplitude": 36.776, "phase_angle": 11.623, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 186.546, 146.380, 116.166 ], "x_axis": [ 0.482, 0.373, 0.793 ], "y_axis": [ -0.151, -0.856, 0.494 ], "z_axis": [ 0.863, -0.358, -0.356 ], "quaternion": [ 0.260, 0.821, 0.068, 0.505 ] } }, { "index": 909, "index_chain": 909, "chain_name": "A", "nt_resnum": 911, "nt_name": "G", "nt_code": "G", "nt_id": "///A/911", "linked_nts": [ "///A/910", "///A/912" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor", "alpha": 42.877, "beta": 121.980, "gamma": 0.218, "delta": 150.175, "epsilon": -162.446, "zeta": -132.846, "epsilon_zeta": -29.600, "bb_type": "--", "chi": -129.248, "glyco_bond": "anti", "C5prime_xyz": [ -1.930, 8.717, -0.656 ], "P_xyz": [ -0.289, 9.326, 1.308 ], "form": ".", "ssZp": 1.734, "Dp": 1.963, "splay_angle": 20.758, "splay_distance": 4.034, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 163.966, "theta": -113.281, "eta_prime": -158.945, "theta_prime": -130.943, "eta_base": -112.042, "theta_base": -123.287, "v0": -22.828, "v1": 38.741, "v2": -38.952, "v3": 26.707, "v4": -2.706, "amplitude": 40.329, "phase_angle": 164.984, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 190.765, 146.847, 116.794 ], "x_axis": [ -0.346, -0.081, 0.935 ], "y_axis": [ -0.430, -0.872, -0.234 ], "z_axis": [ 0.834, -0.483, 0.267 ], "quaternion": [ 0.111, 0.561, -0.227, 0.788 ] } }, { "index": 910, "index_chain": 910, "chain_name": "A", "nt_resnum": 912, "nt_name": "C", "nt_code": "C", "nt_id": "///A/912", "linked_nts": [ "///A/911", "///A/913" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,cap-donor,phosphate", "alpha": 33.111, "beta": 142.444, "gamma": -43.288, "delta": 141.110, "epsilon": -85.143, "zeta": 102.904, "epsilon_zeta": 171.953, "bb_type": "--", "chi": -104.212, "glyco_bond": "anti", "C5prime_xyz": [ -2.648, 8.208, -1.994 ], "P_xyz": [ -1.994, 10.701, -1.538 ], "form": "Z", "ssZp": 0.487, "Dp": 0.568, "splay_angle": 45.314, "splay_distance": 7.206, "splay_ratio": 0.408, "d22": null, "d64": null, "eta": -174.978, "theta": 105.359, "eta_prime": -161.205, "theta_prime": 87.011, "eta_base": -144.619, "theta_base": 49.113, "v0": -26.005, "v1": 37.568, "v2": -34.358, "v3": 20.225, "v4": 3.375, "amplitude": 37.563, "phase_angle": 156.161, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 194.590, 147.708, 117.744 ], "x_axis": [ -0.489, -0.352, 0.798 ], "y_axis": [ -0.277, -0.805, -0.525 ], "z_axis": [ 0.827, -0.477, 0.297 ], "quaternion": [ -0.023, 0.505, -0.311, 0.805 ] } }, { "index": 911, "index_chain": 911, "chain_name": "A", "nt_resnum": 913, "nt_name": "A", "nt_code": "A", "nt_id": "///A/913", "linked_nts": [ "///A/912", "///A/914" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,cap-acceptor", "alpha": 167.934, "beta": 168.284, "gamma": 65.477, "delta": 143.080, "epsilon": -116.919, "zeta": -91.345, "epsilon_zeta": -25.573, "bb_type": "--", "chi": 132.755, "glyco_bond": "--", "C5prime_xyz": [ -3.010, 6.730, 3.209 ], "P_xyz": [ -2.087, 5.140, 5.080 ], "form": ".", "ssZp": 0.277, "Dp": 1.321, "splay_angle": 32.068, "splay_distance": 5.589, "splay_ratio": 0.277, "d22": null, "d64": null, "eta": 111.630, "theta": -57.860, "eta_prime": 120.568, "theta_prime": -103.064, "eta_base": 103.245, "theta_base": -113.267, "v0": -21.683, "v1": 34.567, "v2": -33.660, "v3": 21.919, "v4": -0.309, "amplitude": 35.429, "phase_angle": 161.820, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.045, "frame": { "rmsd": 0.016, "origin": [ 190.025, 146.538, 112.292 ], "x_axis": [ -0.735, -0.676, 0.053 ], "y_axis": [ 0.164, -0.254, -0.953 ], "z_axis": [ 0.658, -0.692, 0.298 ], "quaternion": [ -0.278, 0.235, -0.544, 0.756 ] } }, { "index": 912, "index_chain": 912, "chain_name": "A", "nt_resnum": 914, "nt_name": "C", "nt_code": "C", "nt_id": "///A/914", "linked_nts": [ "///A/913", "///A/915" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": 113.806, "beta": -171.259, "gamma": 166.998, "delta": 79.685, "epsilon": -148.452, "zeta": -119.375, "epsilon_zeta": -29.077, "bb_type": "BI", "chi": -157.033, "glyco_bond": "anti", "C5prime_xyz": [ -1.338, 8.777, 0.325 ], "P_xyz": [ -0.128, 10.218, -1.493 ], "form": "A", "ssZp": 4.368, "Dp": 4.670, "splay_angle": 25.457, "splay_distance": 3.975, "splay_ratio": 0.221, "d22": 3.816, "d64": 3.717, "eta": 92.906, "theta": -174.518, "eta_prime": 137.784, "theta_prime": -167.546, "eta_base": 159.079, "theta_base": -141.214, "v0": 2.393, "v1": -25.362, "v2": 37.449, "v3": -37.047, "v4": 21.858, "amplitude": 38.792, "phase_angle": 15.124, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.060, "frame": { "rmsd": 0.005, "origin": [ 192.957, 150.659, 114.671 ], "x_axis": [ -0.002, -0.982, 0.191 ], "y_axis": [ 0.450, -0.172, -0.876 ], "z_axis": [ 0.893, 0.084, 0.442 ], "quaternion": [ 0.563, -0.426, 0.311, -0.636 ] } }, { "index": 913, "index_chain": 913, "chain_name": "A", "nt_resnum": 915, "nt_name": "U", "nt_code": "U", "nt_id": "///A/915", "linked_nts": [ "///A/914", "///A/916" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop", "alpha": 33.599, "beta": 116.498, "gamma": 0.197, "delta": 78.238, "epsilon": -128.478, "zeta": -126.798, "epsilon_zeta": -1.680, "bb_type": "--", "chi": -156.094, "glyco_bond": "anti", "C5prime_xyz": [ -1.675, 8.840, 0.253 ], "P_xyz": [ 0.645, 8.968, 1.459 ], "form": "A", "ssZp": 4.141, "Dp": 4.667, "splay_angle": 22.561, "splay_distance": 3.739, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 176.875, "theta": -133.324, "eta_prime": -178.361, "theta_prime": -134.951, "eta_base": -151.495, "theta_base": -114.667, "v0": -1.071, "v1": -22.592, "v2": 36.367, "v3": -37.933, "v4": 24.586, "amplitude": 38.730, "phase_angle": 20.117, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.100, "frame": { "rmsd": 0.007, "origin": [ 195.798, 149.951, 117.359 ], "x_axis": [ -0.261, -0.845, -0.467 ], "y_axis": [ 0.363, 0.363, -0.858 ], "z_axis": [ 0.894, -0.394, 0.212 ], "quaternion": [ 0.573, -0.203, 0.594, -0.527 ] } }, { "index": 914, "index_chain": 914, "chain_name": "A", "nt_resnum": 916, "nt_name": "G", "nt_code": "G", "nt_id": "///A/916", "linked_nts": [ "///A/915", "///A/917" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 109.691, "beta": -99.364, "gamma": -170.686, "delta": 82.182, "epsilon": -129.684, "zeta": -121.311, "epsilon_zeta": -8.373, "bb_type": "--", "chi": 171.452, "glyco_bond": "anti", "C5prime_xyz": [ -1.758, 8.329, 2.057 ], "P_xyz": [ -0.194, 9.690, 0.456 ], "form": "A", "ssZp": 4.489, "Dp": 4.588, "splay_angle": 21.236, "splay_distance": 3.213, "splay_ratio": 0.184, "d22": null, "d64": null, "eta": 173.474, "theta": -164.300, "eta_prime": -172.080, "theta_prime": -160.372, "eta_base": -135.699, "theta_base": -114.588, "v0": -0.981, "v1": -21.040, "v2": 33.822, "v3": -35.308, "v4": 22.912, "amplitude": 36.023, "phase_angle": 20.134, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 198.224, 147.344, 118.497 ], "x_axis": [ -0.255, -0.575, -0.777 ], "y_axis": [ 0.454, 0.638, -0.622 ], "z_axis": [ 0.854, -0.511, 0.099 ], "quaternion": [ 0.609, -0.045, 0.670, -0.423 ] } }, { "index": 915, "index_chain": 915, "chain_name": "A", "nt_resnum": 917, "nt_name": "A", "nt_code": "A", "nt_id": "///A/917", "linked_nts": [ "///A/916", "///A/918" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-acceptor", "alpha": 21.943, "beta": 116.921, "gamma": 2.494, "delta": 80.203, "epsilon": -129.491, "zeta": 13.398, "epsilon_zeta": 217.111, "bb_type": "--", "chi": -155.253, "glyco_bond": "anti", "C5prime_xyz": [ -1.358, 8.753, 0.240 ], "P_xyz": [ 1.038, 8.567, 1.280 ], "form": ".", "ssZp": 4.196, "Dp": 4.735, "splay_angle": 26.940, "splay_distance": 5.202, "splay_ratio": 0.252, "d22": null, "d64": null, "eta": 169.321, "theta": -71.880, "eta_prime": -179.681, "theta_prime": -84.553, "eta_base": -125.575, "theta_base": -96.788, "v0": 2.054, "v1": -24.376, "v2": 36.219, "v3": -36.043, "v4": 21.433, "amplitude": 37.597, "phase_angle": 15.563, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.006, "origin": [ 200.216, 144.830, 118.300 ], "x_axis": [ 0.127, 0.071, -0.989 ], "y_axis": [ 0.526, 0.841, 0.128 ], "z_axis": [ 0.841, -0.536, 0.070 ], "quaternion": [ 0.714, 0.233, 0.641, -0.159 ] } }, { "index": 916, "index_chain": 916, "chain_name": "A", "nt_resnum": 918, "nt_name": "U", "nt_code": "U", "nt_id": "///A/918", "linked_nts": [ "///A/917", "///A/919" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor", "alpha": -114.854, "beta": 76.299, "gamma": -128.957, "delta": 81.810, "epsilon": -179.654, "zeta": 51.545, "epsilon_zeta": 128.801, "bb_type": "--", "chi": 164.419, "glyco_bond": "anti", "C5prime_xyz": [ -2.679, 8.524, 1.860 ], "P_xyz": [ -4.585, 10.272, 1.377 ], "form": ".", "ssZp": 2.479, "Dp": 3.573, "splay_angle": 17.895, "splay_distance": 2.752, "splay_ratio": 0.156, "d22": 4.922, "d64": 3.472, "eta": -120.190, "theta": -128.718, "eta_prime": -110.496, "theta_prime": -154.815, "eta_base": -98.587, "theta_base": -114.195, "v0": -17.710, "v1": -3.891, "v2": 22.345, "v3": -33.377, "v4": 32.247, "amplitude": 34.141, "phase_angle": 49.119, "puckering": "C4'-exo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.110, "frame": { "rmsd": 0.014, "origin": [ 202.640, 141.449, 115.177 ], "x_axis": [ 0.059, 0.221, -0.974 ], "y_axis": [ 0.387, 0.894, 0.226 ], "z_axis": [ 0.920, -0.390, -0.033 ], "quaternion": [ 0.693, 0.222, 0.683, -0.060 ] } }, { "index": 917, "index_chain": 917, "chain_name": "A", "nt_resnum": 919, "nt_name": "U", "nt_code": "U", "nt_id": "///A/919", "linked_nts": [ "///A/918", "///A/920" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": 155.694, "beta": 98.082, "gamma": 99.675, "delta": 78.508, "epsilon": -143.356, "zeta": -79.675, "epsilon_zeta": -63.680, "bb_type": "BI", "chi": -162.720, "glyco_bond": "anti", "C5prime_xyz": [ -1.165, 8.597, 0.680 ], "P_xyz": [ -0.044, 8.697, -1.671 ], "form": "A", "ssZp": 4.526, "Dp": 4.736, "splay_angle": 19.735, "splay_distance": 2.978, "splay_ratio": 0.172, "d22": null, "d64": null, "eta": 47.157, "theta": -146.512, "eta_prime": 118.605, "theta_prime": -164.863, "eta_base": -176.278, "theta_base": -140.288, "v0": 6.604, "v1": -29.641, "v2": 40.377, "v3": -37.527, "v4": 19.454, "amplitude": 40.936, "phase_angle": 9.473, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.005, "origin": [ 204.971, 140.015, 114.890 ], "x_axis": [ 0.142, 0.855, -0.498 ], "y_axis": [ 0.379, 0.418, 0.826 ], "z_axis": [ 0.914, -0.306, -0.265 ], "quaternion": [ 0.569, 0.497, 0.621, 0.209 ] } }, { "index": 918, "index_chain": 918, "chain_name": "A", "nt_resnum": 920, "nt_name": "G", "nt_code": "G", "nt_id": "///A/920", "linked_nts": [ "///A/919", "///A/921" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack", "alpha": -57.924, "beta": 154.381, "gamma": 58.574, "delta": 80.560, "epsilon": -110.871, "zeta": -45.044, "epsilon_zeta": -65.827, "bb_type": "--", "chi": -175.549, "glyco_bond": "anti", "C5prime_xyz": [ -1.340, 8.413, 1.388 ], "P_xyz": [ 1.256, 8.624, 1.155 ], "form": ".", "ssZp": 4.706, "Dp": 4.848, "splay_angle": 20.572, "splay_distance": 3.862, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 172.584, "theta": -115.356, "eta_prime": -176.021, "theta_prime": -132.061, "eta_base": -130.060, "theta_base": -139.542, "v0": 7.120, "v1": -28.984, "v2": 38.700, "v3": -35.653, "v4": 18.010, "amplitude": 39.118, "phase_angle": 8.387, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.766, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 207.075, 139.839, 112.789 ], "x_axis": [ 0.229, 0.972, 0.050 ], "y_axis": [ 0.349, -0.130, 0.928 ], "z_axis": [ 0.909, -0.195, -0.369 ], "quaternion": [ 0.427, 0.657, 0.502, 0.365 ] } }, { "index": 919, "index_chain": 919, "chain_name": "A", "nt_resnum": 921, "nt_name": "G", "nt_code": "G", "nt_id": "///A/921", "linked_nts": [ "///A/920", "///A/922" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": -109.861, "beta": 83.999, "gamma": 161.386, "delta": 82.374, "epsilon": -117.174, "zeta": -69.967, "epsilon_zeta": -47.207, "bb_type": "--", "chi": 173.316, "glyco_bond": "anti", "C5prime_xyz": [ -1.261, 8.148, 2.030 ], "P_xyz": [ -1.289, 10.396, 0.676 ], "form": ".", "ssZp": 4.822, "Dp": 4.813, "splay_angle": 44.692, "splay_distance": 6.523, "splay_ratio": 0.380, "d22": null, "d64": null, "eta": 177.995, "theta": -131.236, "eta_prime": 179.615, "theta_prime": -122.623, "eta_base": -168.346, "theta_base": -47.134, "v0": 6.208, "v1": -27.175, "v2": 36.672, "v3": -34.109, "v4": 17.636, "amplitude": 37.154, "phase_angle": 9.240, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.015, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 208.277, 140.029, 109.125 ], "x_axis": [ 0.156, 0.950, 0.269 ], "y_axis": [ 0.431, -0.311, 0.847 ], "z_axis": [ 0.889, -0.016, -0.458 ], "quaternion": [ 0.311, 0.694, 0.498, 0.417 ] } }, { "index": 920, "index_chain": 920, "chain_name": "A", "nt_resnum": 922, "nt_name": "A", "nt_code": "A", "nt_id": "///A/922", "linked_nts": [ "///A/921", null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "break,anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": 169.048, "beta": -130.066, "gamma": 129.386, "delta": 81.707, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -153.235, "glyco_bond": "anti", "C5prime_xyz": [ -1.342, 8.729, 0.089 ], "P_xyz": [ 0.933, 8.535, -1.191 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 2.352, "v1": -24.094, "v2": 35.435, "v3": -35.062, "v4": 20.623, "amplitude": 36.686, "phase_angle": 15.008, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 211.738, 142.579, 114.031 ], "x_axis": [ 0.367, -0.299, 0.881 ], "y_axis": [ 0.424, -0.789, -0.444 ], "z_axis": [ 0.828, 0.536, -0.163 ], "quaternion": [ -0.322, 0.762, 0.041, 0.561 ] } }, { "index": 921, "index_chain": 921, "chain_name": "A", "nt_resnum": 945, "nt_name": "C", "nt_code": "C", "nt_id": "///A/945", "linked_nts": [ null, "///A/946" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-pair-contact,ss-non-loop", "alpha": null, "beta": -92.184, "gamma": -53.961, "delta": 81.912, "epsilon": -161.509, "zeta": -95.643, "epsilon_zeta": -65.866, "bb_type": "BI", "chi": -149.208, "glyco_bond": "anti", "C5prime_xyz": [ -1.260, 8.771, -0.121 ], "P_xyz": [ -2.090, 11.133, 0.652 ], "form": ".", "ssZp": 4.139, "Dp": 4.546, "splay_angle": 34.530, "splay_distance": 5.543, "splay_ratio": 0.297, "d22": null, "d64": null, "eta": null, "theta": 158.766, "eta_prime": null, "theta_prime": 179.253, "eta_base": null, "theta_base": -145.553, "v0": 2.976, "v1": -24.562, "v2": 35.624, "v3": -34.909, "v4": 20.158, "amplitude": 36.730, "phase_angle": 14.094, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.004, "origin": [ 230.666, 146.403, 106.593 ], "x_axis": [ -0.006, -0.926, -0.376 ], "y_axis": [ 0.220, -0.369, 0.903 ], "z_axis": [ -0.975, -0.077, 0.206 ], "quaternion": [ -0.456, -0.538, 0.328, 0.629 ] } }, { "index": 922, "index_chain": 922, "chain_name": "A", "nt_resnum": 946, "nt_name": "G", "nt_code": "G", "nt_id": "///A/946", "linked_nts": [ "///A/945", "///A/947" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": 169.006, "beta": -134.279, "gamma": 164.669, "delta": 81.231, "epsilon": -143.799, "zeta": -72.689, "epsilon_zeta": -71.110, "bb_type": "BI", "chi": -165.892, "glyco_bond": "anti", "C5prime_xyz": [ -1.361, 8.642, 0.859 ], "P_xyz": [ 0.340, 9.460, -0.960 ], "form": "A", "ssZp": 4.581, "Dp": 4.701, "splay_angle": 19.463, "splay_distance": 3.200, "splay_ratio": 0.175, "d22": null, "d64": null, "eta": 170.939, "theta": -149.288, "eta_prime": -169.361, "theta_prime": -154.699, "eta_base": -134.465, "theta_base": -131.250, "v0": 4.355, "v1": -26.203, "v2": 36.927, "v3": -35.430, "v4": 19.586, "amplitude": 37.772, "phase_angle": 12.146, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.236, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 225.463, 144.508, 106.358 ], "x_axis": [ 0.093, -0.988, 0.120 ], "y_axis": [ 0.203, 0.137, 0.970 ], "z_axis": [ -0.975, -0.066, 0.213 ], "quaternion": [ 0.601, 0.431, -0.456, -0.496 ] } }, { "index": 923, "index_chain": 923, "chain_name": "A", "nt_resnum": 947, "nt_name": "A", "nt_code": "A", "nt_id": "///A/947", "linked_nts": [ "///A/946", "///A/948" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,ss-non-loop", "alpha": -60.033, "beta": 169.810, "gamma": 58.440, "delta": 82.732, "epsilon": -99.617, "zeta": -159.561, "epsilon_zeta": 59.944, "bb_type": "BII", "chi": -150.103, "glyco_bond": "anti", "C5prime_xyz": [ -1.744, 8.832, -0.096 ], "P_xyz": [ 0.775, 9.524, -0.269 ], "form": ".", "ssZp": 3.462, "Dp": 4.487, "splay_angle": 35.761, "splay_distance": 6.013, "splay_ratio": 0.362, "d22": null, "d64": null, "eta": -173.570, "theta": -156.581, "eta_prime": -162.550, "theta_prime": -158.104, "eta_base": -129.030, "theta_base": -92.504, "v0": -3.585, "v1": -18.272, "v2": 31.821, "v3": -34.805, "v4": 24.261, "amplitude": 34.936, "phase_angle": 24.377, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.935, "filter_rmsd": 0.037, "frame": { "rmsd": 0.004, "origin": [ 222.881, 142.771, 105.610 ], "x_axis": [ 0.237, -0.764, 0.600 ], "y_axis": [ -0.125, 0.588, 0.799 ], "z_axis": [ -0.963, -0.265, 0.044 ], "quaternion": [ 0.684, 0.389, -0.572, -0.234 ] } }, { "index": 924, "index_chain": 924, "chain_name": "A", "nt_resnum": 948, "nt_name": "A", "nt_code": "A", "nt_id": "///A/948", "linked_nts": [ "///A/947", "///A/949" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": 82.927, "beta": -87.847, "gamma": -171.924, "delta": 84.313, "epsilon": -117.045, "zeta": -78.685, "epsilon_zeta": -38.360, "bb_type": "--", "chi": 7.615, "glyco_bond": "syn", "C5prime_xyz": [ -5.629, 4.014, -0.968 ], "P_xyz": [ -5.935, 2.642, 1.253 ], "form": ".", "ssZp": -4.100, "Dp": 4.259, "splay_angle": 24.968, "splay_distance": 3.883, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": -179.407, "theta": -147.053, "eta_prime": -175.149, "theta_prime": -140.027, "eta_base": -107.191, "theta_base": -149.898, "v0": -7.987, "v1": -13.370, "v2": 28.178, "v3": -33.560, "v4": 26.216, "amplitude": 33.262, "phase_angle": 32.097, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 218.512, 142.847, 109.740 ], "x_axis": [ 0.231, -0.761, -0.606 ], "y_axis": [ -0.214, 0.567, -0.795 ], "z_axis": [ 0.949, 0.314, -0.032 ], "quaternion": [ 0.665, -0.417, 0.585, -0.206 ] } }, { "index": 925, "index_chain": 925, "chain_name": "A", "nt_resnum": 949, "nt_name": "U", "nt_code": "U", "nt_id": "///A/949", "linked_nts": [ "///A/948", "///A/950" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -49.100, "beta": 141.782, "gamma": 58.234, "delta": 85.695, "epsilon": -169.455, "zeta": -78.642, "epsilon_zeta": -90.813, "bb_type": "BI", "chi": -149.393, "glyco_bond": "anti", "C5prime_xyz": [ -1.301, 8.718, -0.080 ], "P_xyz": [ 1.230, 8.537, -0.765 ], "form": ".", "ssZp": 4.055, "Dp": 4.368, "splay_angle": 22.813, "splay_distance": 3.684, "splay_ratio": 0.219, "d22": 4.924, "d64": 3.363, "eta": 154.161, "theta": -115.693, "eta_prime": -165.703, "theta_prime": -122.736, "eta_base": -145.278, "theta_base": -45.429, "v0": 2.289, "v1": -22.095, "v2": 32.348, "v3": -31.942, "v4": 18.754, "amplitude": 33.459, "phase_angle": 14.804, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.786, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 215.059, 141.102, 109.409 ], "x_axis": [ -0.105, 0.302, 0.948 ], "y_axis": [ -0.416, 0.852, -0.318 ], "z_axis": [ -0.903, -0.428, 0.036 ], "quaternion": [ 0.668, 0.041, -0.693, 0.269 ] } }, { "index": 926, "index_chain": 926, "chain_name": "A", "nt_resnum": 950, "nt_name": "U", "nt_code": "U", "nt_id": "///A/950", "linked_nts": [ "///A/949", "///A/951" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,ss-non-loop", "alpha": -171.711, "beta": -122.604, "gamma": 120.152, "delta": 83.260, "epsilon": -78.341, "zeta": -153.228, "epsilon_zeta": 74.887, "bb_type": "BII", "chi": -105.152, "glyco_bond": "anti", "C5prime_xyz": [ -2.048, 7.808, -2.498 ], "P_xyz": [ -0.139, 6.574, -3.798 ], "form": ".", "ssZp": -0.076, "Dp": 4.569, "splay_angle": 46.203, "splay_distance": 7.824, "splay_ratio": 0.395, "d22": 3.834, "d64": 3.873, "eta": 175.507, "theta": -131.052, "eta_prime": -165.447, "theta_prime": -146.274, "eta_base": -77.745, "theta_base": -144.374, "v0": 3.093, "v1": -24.039, "v2": 34.663, "v3": -33.820, "v4": 19.436, "amplitude": 35.687, "phase_angle": 13.760, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.108, "frame": { "rmsd": 0.007, "origin": [ 212.637, 143.683, 110.427 ], "x_axis": [ -0.473, 0.738, 0.481 ], "y_axis": [ -0.820, -0.169, -0.547 ], "z_axis": [ -0.323, -0.653, 0.685 ], "quaternion": [ 0.511, 0.052, -0.393, 0.763 ] } }, { "index": 927, "index_chain": 927, "chain_name": "A", "nt_resnum": 951, "nt_name": "C", "nt_code": "C", "nt_id": "///A/951", "linked_nts": [ "///A/950", "///A/952" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack", "alpha": 81.135, "beta": -110.144, "gamma": -177.795, "delta": 81.503, "epsilon": -170.909, "zeta": -90.204, "epsilon_zeta": -80.705, "bb_type": "BI", "chi": -177.552, "glyco_bond": "anti", "C5prime_xyz": [ -1.196, 8.390, 1.575 ], "P_xyz": [ 0.272, 9.458, -0.304 ], "form": "A", "ssZp": 4.470, "Dp": 4.506, "splay_angle": 21.287, "splay_distance": 3.103, "splay_ratio": 0.186, "d22": null, "d64": null, "eta": 134.153, "theta": -157.275, "eta_prime": 158.829, "theta_prime": -169.084, "eta_base": 177.502, "theta_base": -148.240, "v0": 6.384, "v1": -28.171, "v2": 38.130, "v3": -35.466, "v4": 18.292, "amplitude": 38.637, "phase_angle": 9.294, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 206.288, 140.146, 113.324 ], "x_axis": [ 0.260, 0.966, -0.002 ], "y_axis": [ -0.163, 0.042, -0.986 ], "z_axis": [ -0.952, 0.256, 0.168 ], "quaternion": [ 0.606, -0.512, -0.392, 0.465 ] } }, { "index": 928, "index_chain": 928, "chain_name": "A", "nt_resnum": 952, "nt_name": "A", "nt_code": "A", "nt_id": "///A/952", "linked_nts": [ "///A/951", "///A/953" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -161.926, "beta": -133.090, "gamma": 117.864, "delta": 78.677, "epsilon": -130.168, "zeta": -117.401, "epsilon_zeta": -12.767, "bb_type": "--", "chi": 175.990, "glyco_bond": "anti", "C5prime_xyz": [ -1.500, 8.254, 1.864 ], "P_xyz": [ 1.093, 8.306, 1.572 ], "form": "A", "ssZp": 4.789, "Dp": 4.782, "splay_angle": 24.737, "splay_distance": 3.549, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 157.865, "theta": -145.858, "eta_prime": 167.970, "theta_prime": -144.401, "eta_base": -155.086, "theta_base": -110.821, "v0": 4.218, "v1": -27.252, "v2": 38.769, "v3": -37.382, "v4": 20.873, "amplitude": 39.734, "phase_angle": 12.652, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 204.093, 140.709, 115.444 ], "x_axis": [ 0.220, 0.782, -0.583 ], "y_axis": [ -0.331, -0.502, -0.799 ], "z_axis": [ -0.917, 0.369, 0.149 ], "quaternion": [ -0.466, 0.627, 0.180, -0.598 ] } }, { "index": 929, "index_chain": 929, "chain_name": "A", "nt_resnum": 953, "nt_name": "G", "nt_code": "G", "nt_id": "///A/953", "linked_nts": [ "///A/952", "///A/954" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -2.966, "beta": 130.040, "gamma": 25.096, "delta": 80.173, "epsilon": -102.887, "zeta": -153.957, "epsilon_zeta": 51.070, "bb_type": "BII", "chi": -171.812, "glyco_bond": "anti", "C5prime_xyz": [ -1.229, 8.535, 1.263 ], "P_xyz": [ 1.250, 8.012, 1.891 ], "form": ".", "ssZp": 4.488, "Dp": 4.767, "splay_angle": 22.209, "splay_distance": 3.536, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": -174.187, "theta": -141.194, "eta_prime": -166.960, "theta_prime": -144.810, "eta_base": -124.341, "theta_base": -155.234, "v0": 5.091, "v1": -27.290, "v2": 37.976, "v3": -36.087, "v4": 19.545, "amplitude": 38.720, "phase_angle": 11.251, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 201.751, 143.285, 116.132 ], "x_axis": [ 0.017, 0.225, -0.974 ], "y_axis": [ -0.371, -0.903, -0.215 ], "z_axis": [ -0.928, 0.365, 0.068 ], "quaternion": [ 0.213, -0.681, 0.054, 0.699 ] } }, { "index": 930, "index_chain": 930, "chain_name": "A", "nt_resnum": 954, "nt_name": "U", "nt_code": "U", "nt_id": "///A/954", "linked_nts": [ "///A/953", "///A/955" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 92.134, "beta": -89.900, "gamma": -179.268, "delta": 82.293, "epsilon": -115.984, "zeta": -102.417, "epsilon_zeta": -13.568, "bb_type": "--", "chi": 176.329, "glyco_bond": "anti", "C5prime_xyz": [ -1.666, 8.383, 1.859 ], "P_xyz": [ 0.013, 9.248, 0.055 ], "form": ".", "ssZp": 4.500, "Dp": 4.597, "splay_angle": 19.496, "splay_distance": 3.026, "splay_ratio": 0.170, "d22": 4.721, "d64": 3.805, "eta": 167.721, "theta": -161.291, "eta_prime": 177.651, "theta_prime": -165.270, "eta_base": -178.524, "theta_base": -135.351, "v0": 0.554, "v1": -22.109, "v2": 34.057, "v3": -34.692, "v4": 21.522, "amplitude": 35.759, "phase_angle": 17.750, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.114, "frame": { "rmsd": 0.014, "origin": [ 199.887, 145.249, 118.406 ], "x_axis": [ 0.069, 0.076, -0.995 ], "y_axis": [ -0.548, -0.831, -0.101 ], "z_axis": [ -0.834, 0.552, -0.016 ], "quaternion": [ -0.236, 0.692, -0.171, -0.661 ] } }, { "index": 931, "index_chain": 931, "chain_name": "A", "nt_resnum": 955, "nt_name": "C", "nt_code": "C", "nt_id": "///A/955", "linked_nts": [ "///A/954", "///A/956" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -47.463, "beta": 152.942, "gamma": 36.575, "delta": 79.491, "epsilon": -151.123, "zeta": -90.653, "epsilon_zeta": -60.470, "bb_type": "BI", "chi": -162.398, "glyco_bond": "anti", "C5prime_xyz": [ -0.944, 8.711, 0.720 ], "P_xyz": [ 1.641, 8.600, 1.104 ], "form": "A", "ssZp": 4.459, "Dp": 4.633, "splay_angle": 16.920, "splay_distance": 2.587, "splay_ratio": 0.147, "d22": null, "d64": null, "eta": 154.967, "theta": -155.652, "eta_prime": 167.698, "theta_prime": -148.728, "eta_base": -145.705, "theta_base": -132.087, "v0": 4.400, "v1": -27.103, "v2": 38.347, "v3": -36.720, "v4": 20.396, "amplitude": 39.240, "phase_angle": 12.245, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.093, "filter_rmsd": 0.073, "frame": { "rmsd": 0.012, "origin": [ 197.988, 147.601, 118.276 ], "x_axis": [ -0.205, -0.556, -0.806 ], "y_axis": [ -0.529, -0.630, 0.569 ], "z_axis": [ -0.824, 0.543, -0.165 ], "quaternion": [ -0.010, -0.630, 0.430, 0.646 ] } }, { "index": 932, "index_chain": 932, "chain_name": "A", "nt_resnum": 956, "nt_name": "A", "nt_code": "A", "nt_id": "///A/956", "linked_nts": [ "///A/955", "///A/957" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate,splayed-apart", "alpha": -38.723, "beta": 147.509, "gamma": 65.744, "delta": 140.245, "epsilon": -68.275, "zeta": -135.202, "epsilon_zeta": 66.927, "bb_type": "--", "chi": -148.807, "glyco_bond": "anti", "C5prime_xyz": [ -1.707, 8.735, 0.307 ], "P_xyz": [ 0.840, 8.671, 0.894 ], "form": ".", "ssZp": 0.581, "Dp": 0.723, "splay_angle": 144.089, "splay_distance": 20.529, "splay_ratio": 0.951, "d22": null, "d64": null, "eta": -139.235, "theta": -56.468, "eta_prime": -121.602, "theta_prime": -108.673, "eta_base": -106.300, "theta_base": -102.337, "v0": -18.816, "v1": 30.958, "v2": -30.750, "v3": 20.637, "v4": -1.280, "amplitude": 32.054, "phase_angle": 163.598, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.348, "filter_rmsd": 0.045, "frame": { "rmsd": 0.014, "origin": [ 196.567, 149.584, 117.414 ], "x_axis": [ -0.292, -0.839, -0.459 ], "y_axis": [ -0.520, -0.264, 0.812 ], "z_axis": [ -0.803, 0.476, -0.360 ], "quaternion": [ -0.146, -0.577, 0.589, 0.547 ] } }, { "index": 933, "index_chain": 933, "chain_name": "A", "nt_resnum": 957, "nt_name": "A", "nt_code": "A", "nt_id": "///A/957", "linked_nts": [ "///A/956", "///A/958" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,cap-acceptor,phosphate,splayed-apart", "alpha": 142.350, "beta": -148.062, "gamma": -77.341, "delta": 137.797, "epsilon": -66.856, "zeta": -123.656, "epsilon_zeta": 56.800, "bb_type": "--", "chi": -123.404, "glyco_bond": "anti", "C5prime_xyz": [ -1.675, 8.634, -1.132 ], "P_xyz": [ -1.587, 11.016, -2.244 ], "form": ".", "ssZp": 0.149, "Dp": 0.612, "splay_angle": 73.485, "splay_distance": 10.192, "splay_ratio": 0.648, "d22": null, "d64": null, "eta": -76.444, "theta": -26.227, "eta_prime": -36.737, "theta_prime": -57.039, "eta_base": -41.545, "theta_base": -58.307, "v0": -21.560, "v1": 32.775, "v2": -30.985, "v3": 19.345, "v4": 1.175, "amplitude": 33.138, "phase_angle": 159.231, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.044, "frame": { "rmsd": 0.011, "origin": [ 186.650, 159.714, 132.263 ], "x_axis": [ -0.035, -0.486, 0.873 ], "y_axis": [ 0.744, -0.596, -0.302 ], "z_axis": [ 0.667, 0.639, 0.383 ], "quaternion": [ -0.434, 0.543, 0.119, 0.710 ] } }, { "index": 934, "index_chain": 934, "chain_name": "A", "nt_resnum": 958, "nt_name": "A", "nt_code": "A", "nt_id": "///A/958", "linked_nts": [ "///A/957", "///A/959" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-stack,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart", "alpha": -155.661, "beta": -92.928, "gamma": 87.756, "delta": 81.371, "epsilon": -159.665, "zeta": -163.874, "epsilon_zeta": 4.209, "bb_type": "--", "chi": -29.335, "glyco_bond": "syn", "C5prime_xyz": [ -4.494, 4.564, -2.829 ], "P_xyz": [ -2.533, 3.073, -3.677 ], "form": ".", "ssZp": -3.749, "Dp": 4.555, "splay_angle": 122.093, "splay_distance": 16.565, "splay_ratio": 0.875, "d22": null, "d64": null, "eta": 80.124, "theta": 129.178, "eta_prime": 141.014, "theta_prime": -168.812, "eta_base": 149.367, "theta_base": -124.347, "v0": 0.968, "v1": -23.262, "v2": 35.431, "v3": -35.810, "v4": 21.991, "amplitude": 37.072, "phase_angle": 17.111, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 195.809, 156.160, 129.549 ], "x_axis": [ -0.164, -0.905, 0.393 ], "y_axis": [ 0.230, -0.422, -0.877 ], "z_axis": [ 0.959, -0.053, 0.277 ], "quaternion": [ -0.416, 0.495, -0.341, 0.683 ] } }, { "index": 935, "index_chain": 935, "chain_name": "A", "nt_resnum": 959, "nt_name": "C", "nt_code": "C", "nt_id": "///A/959", "linked_nts": [ "///A/958", "///A/960" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,phosphate,splayed-apart", "alpha": -119.133, "beta": -147.463, "gamma": 161.822, "delta": 84.317, "epsilon": -146.060, "zeta": -82.897, "epsilon_zeta": -63.163, "bb_type": "BI", "chi": -157.191, "glyco_bond": "anti", "C5prime_xyz": [ -1.170, 8.812, 0.404 ], "P_xyz": [ 0.819, 9.517, -1.138 ], "form": ".", "ssZp": 4.139, "Dp": 4.458, "splay_angle": 16.468, "splay_distance": 2.662, "splay_ratio": 0.146, "d22": 4.102, "d64": 3.266, "eta": -84.566, "theta": -159.856, "eta_prime": -152.235, "theta_prime": -153.755, "eta_base": 145.207, "theta_base": -119.904, "v0": -0.085, "v1": -20.201, "v2": 31.667, "v3": -32.609, "v4": 20.633, "amplitude": 33.446, "phase_angle": 18.773, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.008, "origin": [ 191.787, 146.118, 117.004 ], "x_axis": [ -0.278, -0.197, 0.940 ], "y_axis": [ 0.191, 0.948, 0.255 ], "z_axis": [ -0.941, 0.250, -0.226 ], "quaternion": [ 0.601, 0.002, -0.783, -0.161 ] } }, { "index": 936, "index_chain": 936, "chain_name": "A", "nt_resnum": 960, "nt_name": "U", "nt_code": "U", "nt_id": "///A/960", "linked_nts": [ "///A/959", "///A/961" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": -48.486, "beta": 156.491, "gamma": 63.926, "delta": 151.314, "epsilon": -93.324, "zeta": 166.482, "epsilon_zeta": 100.194, "bb_type": "BII", "chi": -121.721, "glyco_bond": "anti", "C5prime_xyz": [ -2.001, 8.510, -1.057 ], "P_xyz": [ 0.595, 8.832, -0.825 ], "form": ".", "ssZp": 0.663, "Dp": 0.667, "splay_angle": 35.867, "splay_distance": 5.858, "splay_ratio": 0.318, "d22": 6.578, "d64": 5.644, "eta": -163.297, "theta": -160.892, "eta_prime": -127.480, "theta_prime": -179.423, "eta_base": -93.438, "theta_base": -152.142, "v0": -20.905, "v1": 36.629, "v2": -37.468, "v3": 26.373, "v4": -3.645, "amplitude": 38.520, "phase_angle": 166.579, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.656, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 189.179, 146.610, 117.210 ], "x_axis": [ -0.019, 0.309, 0.951 ], "y_axis": [ 0.030, 0.951, -0.309 ], "z_axis": [ -0.999, 0.023, -0.027 ], "quaternion": [ 0.690, -0.120, -0.707, 0.101 ] } }, { "index": 937, "index_chain": 937, "chain_name": "A", "nt_resnum": 961, "nt_name": "C", "nt_code": "C", "nt_id": "///A/961", "linked_nts": [ "///A/960", "///A/962" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 156.541, "beta": -134.227, "gamma": 80.281, "delta": 78.992, "epsilon": -148.787, "zeta": -52.622, "epsilon_zeta": -96.165, "bb_type": "BI", "chi": -168.239, "glyco_bond": "anti", "C5prime_xyz": [ -1.059, 8.573, 1.009 ], "P_xyz": [ 1.506, 8.179, 1.401 ], "form": ".", "ssZp": 4.657, "Dp": 4.709, "splay_angle": 24.033, "splay_distance": 4.780, "splay_ratio": 0.247, "d22": 4.470, "d64": 5.624, "eta": 129.311, "theta": -97.426, "eta_prime": 124.326, "theta_prime": -109.983, "eta_base": 163.044, "theta_base": -94.688, "v0": 6.326, "v1": -29.004, "v2": 39.628, "v3": -36.946, "v4": 19.302, "amplitude": 40.206, "phase_angle": 9.732, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.007, "origin": [ 185.894, 145.202, 112.569 ], "x_axis": [ 0.200, 0.547, 0.813 ], "y_axis": [ 0.474, 0.672, -0.569 ], "z_axis": [ -0.857, 0.499, -0.125 ], "quaternion": [ 0.661, -0.404, -0.632, 0.028 ] } }, { "index": 938, "index_chain": 938, "chain_name": "A", "nt_resnum": 962, "nt_name": "C", "nt_code": "C", "nt_id": "///A/962", "linked_nts": [ "///A/961", "///A/963" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": 159.233, "beta": 177.512, "gamma": -171.204, "delta": 80.661, "epsilon": -138.998, "zeta": -59.720, "epsilon_zeta": -79.278, "bb_type": "BI", "chi": -170.450, "glyco_bond": "anti", "C5prime_xyz": [ -1.483, 8.726, 1.107 ], "P_xyz": [ -0.576, 10.984, 0.095 ], "form": ".", "ssZp": 4.531, "Dp": 4.621, "splay_angle": 29.847, "splay_distance": 4.593, "splay_ratio": 0.258, "d22": null, "d64": null, "eta": 169.728, "theta": -165.175, "eta_prime": -172.569, "theta_prime": -153.643, "eta_base": -130.278, "theta_base": -87.611, "v0": -0.249, "v1": -22.460, "v2": 35.323, "v3": -36.401, "v4": 23.088, "amplitude": 37.342, "phase_angle": 18.927, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.613, "filter_rmsd": 0.063, "frame": { "rmsd": 0.004, "origin": [ 183.318, 146.404, 116.413 ], "x_axis": [ 0.534, 0.731, 0.425 ], "y_axis": [ 0.144, 0.416, -0.898 ], "z_axis": [ -0.833, 0.541, 0.117 ], "quaternion": [ 0.719, -0.500, -0.437, 0.204 ] } }, { "index": 939, "index_chain": 939, "chain_name": "A", "nt_resnum": 963, "nt_name": "G", "nt_code": "G", "nt_id": "///A/963", "linked_nts": [ "///A/962", "///A/964" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -78.631, "beta": 161.316, "gamma": 67.158, "delta": 84.163, "epsilon": -127.193, "zeta": -171.181, "epsilon_zeta": 43.988, "bb_type": "BII", "chi": -172.846, "glyco_bond": "anti", "C5prime_xyz": [ -1.332, 8.514, 1.280 ], "P_xyz": [ 1.272, 8.751, 1.121 ], "form": ".", "ssZp": 4.652, "Dp": 4.727, "splay_angle": 67.756, "splay_distance": 10.729, "splay_ratio": 0.561, "d22": null, "d64": null, "eta": 160.045, "theta": 166.888, "eta_prime": -173.960, "theta_prime": 161.328, "eta_base": -91.758, "theta_base": 151.548, "v0": 3.864, "v1": -24.993, "v2": 35.405, "v3": -34.161, "v4": 19.138, "amplitude": 36.285, "phase_angle": 12.642, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.560, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 182.840, 150.923, 117.080 ], "x_axis": [ 0.432, 0.723, -0.539 ], "y_axis": [ -0.425, -0.364, -0.829 ], "z_axis": [ -0.795, 0.588, 0.150 ], "quaternion": [ 0.552, -0.641, -0.116, 0.520 ] } }, { "index": 940, "index_chain": 940, "chain_name": "A", "nt_resnum": 964, "nt_name": "A", "nt_code": "A", "nt_id": "///A/964", "linked_nts": [ "///A/963", "///A/965" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate", "alpha": 97.608, "beta": -120.864, "gamma": -157.249, "delta": 83.743, "epsilon": -140.885, "zeta": -71.055, "epsilon_zeta": -69.830, "bb_type": "BI", "chi": -178.556, "glyco_bond": "anti", "C5prime_xyz": [ -1.700, 8.452, 1.597 ], "P_xyz": [ -0.537, 10.266, 0.106 ], "form": "A", "ssZp": 4.478, "Dp": 4.546, "splay_angle": 22.282, "splay_distance": 3.442, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": -171.410, "theta": -169.348, "eta_prime": 174.965, "theta_prime": -162.354, "eta_base": 156.065, "theta_base": -110.453, "v0": 0.076, "v1": -21.353, "v2": 33.245, "v3": -34.146, "v4": 21.457, "amplitude": 35.050, "phase_angle": 18.469, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 176.032, 145.474, 123.331 ], "x_axis": [ 0.675, 0.701, 0.229 ], "y_axis": [ -0.068, 0.369, -0.927 ], "z_axis": [ -0.734, 0.611, 0.297 ], "quaternion": [ 0.765, -0.503, -0.315, 0.251 ] } }, { "index": 941, "index_chain": 941, "chain_name": "A", "nt_resnum": 965, "nt_name": "A", "nt_code": "A", "nt_id": "///A/965", "linked_nts": [ "///A/964", "///A/966" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": -68.696, "beta": 170.452, "gamma": 56.946, "delta": 88.169, "epsilon": -104.883, "zeta": -100.365, "epsilon_zeta": -4.518, "bb_type": "--", "chi": -161.676, "glyco_bond": "anti", "C5prime_xyz": [ -1.375, 8.651, 0.672 ], "P_xyz": [ 1.209, 8.888, 1.051 ], "form": ".", "ssZp": 3.995, "Dp": 4.499, "splay_angle": 32.410, "splay_distance": 5.599, "splay_ratio": 0.281, "d22": null, "d64": null, "eta": 176.903, "theta": -94.147, "eta_prime": -167.577, "theta_prime": -100.090, "eta_base": -107.943, "theta_base": -71.294, "v0": 0.731, "v1": -19.910, "v2": 30.309, "v3": -30.786, "v4": 18.998, "amplitude": 31.754, "phase_angle": 17.350, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.829, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 175.106, 148.318, 125.035 ], "x_axis": [ 0.397, 0.741, -0.541 ], "y_axis": [ -0.591, -0.245, -0.768 ], "z_axis": [ -0.702, 0.625, 0.341 ], "quaternion": [ 0.611, -0.570, -0.066, 0.545 ] } }, { "index": 942, "index_chain": 942, "chain_name": "A", "nt_resnum": 966, "nt_name": "U", "nt_code": "U", "nt_id": "///A/966", "linked_nts": [ "///A/965", "///A/967" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": 108.756, "beta": -122.237, "gamma": -153.659, "delta": 81.926, "epsilon": -135.630, "zeta": -82.714, "epsilon_zeta": -52.916, "bb_type": "BI", "chi": -160.158, "glyco_bond": "anti", "C5prime_xyz": [ -1.327, 8.681, 0.548 ], "P_xyz": [ -0.742, 10.142, -1.538 ], "form": ".", "ssZp": 4.372, "Dp": 4.689, "splay_angle": 32.689, "splay_distance": 5.251, "splay_ratio": 0.283, "d22": null, "d64": null, "eta": 164.218, "theta": -139.774, "eta_prime": -170.257, "theta_prime": -139.683, "eta_base": -118.992, "theta_base": -92.502, "v0": 2.902, "v1": -24.738, "v2": 36.052, "v3": -35.387, "v4": 20.478, "amplitude": 37.201, "phase_angle": 14.272, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.006, "origin": [ 173.476, 153.473, 123.580 ], "x_axis": [ -0.061, 0.397, -0.916 ], "y_axis": [ -0.812, -0.554, -0.186 ], "z_axis": [ -0.581, 0.732, 0.356 ], "quaternion": [ 0.430, -0.533, 0.195, 0.702 ] } }, { "index": 943, "index_chain": 943, "chain_name": "A", "nt_resnum": 967, "nt_name": "G", "nt_code": "G", "nt_id": "///A/967", "linked_nts": [ "///A/966", "///A/968" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": 165.413, "beta": -139.706, "gamma": 155.215, "delta": 81.640, "epsilon": -129.168, "zeta": -79.424, "epsilon_zeta": -49.743, "bb_type": "BI", "chi": -167.111, "glyco_bond": "anti", "C5prime_xyz": [ -1.585, 8.737, 0.972 ], "P_xyz": [ 0.568, 9.527, -0.276 ], "form": ".", "ssZp": 4.372, "Dp": 4.577, "splay_angle": 19.521, "splay_distance": 3.183, "splay_ratio": 0.170, "d22": null, "d64": null, "eta": 150.399, "theta": -142.169, "eta_prime": -178.429, "theta_prime": -144.991, "eta_base": -112.710, "theta_base": -101.156, "v0": -0.281, "v1": -21.631, "v2": 34.121, "v3": -35.260, "v4": 22.387, "amplitude": 36.102, "phase_angle": 19.067, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.102, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 170.721, 156.296, 120.113 ], "x_axis": [ -0.413, -0.544, -0.730 ], "y_axis": [ -0.592, -0.449, 0.669 ], "z_axis": [ -0.692, 0.709, -0.137 ], "quaternion": [ 0.018, -0.541, 0.525, 0.657 ] } }, { "index": 944, "index_chain": 944, "chain_name": "A", "nt_resnum": 968, "nt_name": "C", "nt_code": "C", "nt_id": "///A/968", "linked_nts": [ "///A/967", "///A/969" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -51.143, "beta": 152.724, "gamma": 52.873, "delta": 78.092, "epsilon": -138.845, "zeta": -40.607, "epsilon_zeta": -98.238, "bb_type": "BI", "chi": -150.268, "glyco_bond": "anti", "C5prime_xyz": [ -1.731, 8.895, -0.084 ], "P_xyz": [ 0.764, 9.451, -0.585 ], "form": ".", "ssZp": 4.025, "Dp": 4.622, "splay_angle": 32.423, "splay_distance": 5.080, "splay_ratio": 0.304, "d22": 6.115, "d64": 5.072, "eta": 163.000, "theta": -123.283, "eta_prime": -176.976, "theta_prime": -135.532, "eta_base": -114.924, "theta_base": -58.113, "v0": -2.304, "v1": -21.366, "v2": 35.527, "v3": -37.894, "v4": 25.319, "amplitude": 38.314, "phase_angle": 21.988, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.598, "filter_rmsd": 0.060, "frame": { "rmsd": 0.009, "origin": [ 168.352, 157.092, 118.143 ], "x_axis": [ -0.727, -0.671, -0.146 ], "y_axis": [ -0.358, 0.189, 0.914 ], "z_axis": [ -0.586, 0.717, -0.378 ], "quaternion": [ -0.145, -0.340, 0.757, 0.539 ] } }, { "index": 945, "index_chain": 945, "chain_name": "A", "nt_resnum": 969, "nt_name": "C", "nt_code": "C", "nt_id": "///A/969", "linked_nts": [ "///A/968", "///A/970" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -137.337, "beta": 111.984, "gamma": 152.107, "delta": 92.074, "epsilon": -117.841, "zeta": -80.818, "epsilon_zeta": -37.023, "bb_type": "--", "chi": -43.959, "glyco_bond": "syn", "C5prime_xyz": [ -3.250, 4.757, -3.330 ], "P_xyz": [ -5.313, 3.194, -3.864 ], "form": ".", "ssZp": -3.837, "Dp": 4.850, "splay_angle": 43.560, "splay_distance": 7.120, "splay_ratio": 0.372, "d22": null, "d64": null, "eta": 176.140, "theta": -113.737, "eta_prime": -175.759, "theta_prime": -109.347, "eta_base": -83.459, "theta_base": -171.381, "v0": 19.378, "v1": -36.159, "v2": 38.321, "v3": -28.069, "v4": 5.642, "amplitude": 38.971, "phase_angle": 349.515, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.025, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 163.818, 157.170, 120.435 ], "x_axis": [ -0.655, -0.307, -0.690 ], "y_axis": [ 0.149, 0.843, -0.517 ], "z_axis": [ 0.740, -0.441, -0.507 ], "quaternion": [ 0.413, -0.046, 0.867, -0.276 ] } }, { "index": 946, "index_chain": 946, "chain_name": "A", "nt_resnum": 970, "nt_name": "A", "nt_code": "A", "nt_id": "///A/970", "linked_nts": [ "///A/969", "///A/971" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-pair-contact,internal-loop", "alpha": 89.300, "beta": 102.650, "gamma": -67.600, "delta": 160.159, "epsilon": -67.961, "zeta": 120.772, "epsilon_zeta": 171.267, "bb_type": "--", "chi": -54.585, "glyco_bond": "--", "C5prime_xyz": [ -2.847, 6.181, -3.137 ], "P_xyz": [ -2.431, 8.633, -4.043 ], "form": "B", "ssZp": -0.517, "Dp": 0.508, "splay_angle": 19.449, "splay_distance": 3.299, "splay_ratio": 0.171, "d22": null, "d64": null, "eta": 156.249, "theta": -169.678, "eta_prime": -166.513, "theta_prime": -164.986, "eta_base": 145.907, "theta_base": -126.958, "v0": -7.158, "v1": 29.618, "v2": -39.402, "v3": 36.372, "v4": -18.495, "amplitude": 39.838, "phase_angle": 188.485, "puckering": "C3'-exo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 160.740, 158.193, 114.097 ], "x_axis": [ 0.259, -0.747, 0.613 ], "y_axis": [ -0.097, 0.611, 0.786 ], "z_axis": [ -0.961, -0.263, 0.086 ], "quaternion": [ 0.699, 0.375, -0.563, -0.232 ] } }, { "index": 947, "index_chain": 947, "chain_name": "A", "nt_resnum": 971, "nt_name": "A", "nt_code": "A", "nt_id": "///A/971", "linked_nts": [ "///A/970", "///A/972" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -12.154, "beta": 101.414, "gamma": -28.041, "delta": 133.265, "epsilon": 67.134, "zeta": -47.596, "epsilon_zeta": -245.270, "bb_type": "--", "chi": -50.821, "glyco_bond": "--", "C5prime_xyz": [ -3.921, 6.030, -3.088 ], "P_xyz": [ -2.593, 8.129, -3.981 ], "form": ".", "ssZp": 1.454, "Dp": 1.460, "splay_angle": 18.494, "splay_distance": 2.923, "splay_ratio": 0.164, "d22": null, "d64": null, "eta": 148.362, "theta": 177.592, "eta_prime": -171.588, "theta_prime": 161.527, "eta_base": -141.616, "theta_base": -157.134, "v0": -25.404, "v1": 36.395, "v2": -32.943, "v3": 19.268, "v4": 3.631, "amplitude": 36.196, "phase_angle": 155.520, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 157.648, 158.374, 115.232 ], "x_axis": [ 0.240, -0.443, 0.864 ], "y_axis": [ -0.229, 0.839, 0.494 ], "z_axis": [ -0.944, -0.316, 0.100 ], "quaternion": [ 0.738, 0.274, -0.612, -0.073 ] } }, { "index": 948, "index_chain": 948, "chain_name": "A", "nt_resnum": 972, "nt_name": "U", "nt_code": "U", "nt_id": "///A/972", "linked_nts": [ "///A/971", "///A/973" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": -122.828, "beta": -101.195, "gamma": 77.405, "delta": 130.554, "epsilon": -170.418, "zeta": -112.349, "epsilon_zeta": -58.069, "bb_type": "BI", "chi": -92.134, "glyco_bond": "anti", "C5prime_xyz": [ -3.201, 7.732, -2.480 ], "P_xyz": [ -0.865, 8.911, -2.131 ], "form": ".", "ssZp": 2.238, "Dp": 2.383, "splay_angle": 22.260, "splay_distance": 3.954, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": -178.843, "theta": -131.118, "eta_prime": 177.877, "theta_prime": -155.974, "eta_base": -142.957, "theta_base": -116.014, "v0": -33.589, "v1": 39.733, "v2": -30.630, "v3": 12.121, "v4": 13.374, "amplitude": 39.055, "phase_angle": 141.653, "puckering": "C1'-exo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 155.157, 156.859, 115.430 ], "x_axis": [ 0.163, 0.026, 0.986 ], "y_axis": [ -0.384, 0.922, 0.039 ], "z_axis": [ -0.909, -0.385, 0.161 ], "quaternion": [ 0.749, 0.142, -0.632, 0.137 ] } }, { "index": 949, "index_chain": 949, "chain_name": "A", "nt_resnum": 973, "nt_name": "G", "nt_code": "G", "nt_id": "///A/973", "linked_nts": [ "///A/972", "///A/974" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -25.028, "beta": 172.863, "gamma": -18.038, "delta": 84.433, "epsilon": 178.502, "zeta": -74.758, "epsilon_zeta": -106.741, "bb_type": "BI", "chi": -140.336, "glyco_bond": "anti", "C5prime_xyz": [ -1.409, 8.747, -0.693 ], "P_xyz": [ 0.497, 10.424, -0.009 ], "form": "A", "ssZp": 3.855, "Dp": 4.339, "splay_angle": 20.628, "splay_distance": 3.482, "splay_ratio": 0.183, "d22": null, "d64": null, "eta": 145.299, "theta": -153.136, "eta_prime": 146.201, "theta_prime": -152.281, "eta_base": -156.725, "theta_base": -117.308, "v0": 1.876, "v1": -25.086, "v2": 37.363, "v3": -37.272, "v4": 22.418, "amplitude": 38.846, "phase_angle": 15.887, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 152.133, 155.525, 117.601 ], "x_axis": [ 0.430, 0.682, 0.591 ], "y_axis": [ -0.302, 0.726, -0.618 ], "z_axis": [ -0.851, 0.087, 0.519 ], "quaternion": [ 0.818, -0.215, -0.441, 0.301 ] } }, { "index": 950, "index_chain": 950, "chain_name": "A", "nt_resnum": 974, "nt_name": "A", "nt_code": "A", "nt_id": "///A/974", "linked_nts": [ "///A/973", "///A/975" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 148.441, "beta": -147.932, "gamma": 174.927, "delta": 82.868, "epsilon": -134.888, "zeta": -119.142, "epsilon_zeta": -15.746, "bb_type": "--", "chi": -179.552, "glyco_bond": "anti", "C5prime_xyz": [ -1.367, 8.359, 1.683 ], "P_xyz": [ 0.517, 9.845, 0.643 ], "form": "A", "ssZp": 4.639, "Dp": 4.673, "splay_angle": 23.143, "splay_distance": 3.518, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 167.962, "theta": -166.053, "eta_prime": -175.100, "theta_prime": -158.990, "eta_base": -126.312, "theta_base": -125.176, "v0": 3.709, "v1": -24.732, "v2": 35.240, "v3": -34.053, "v4": 19.184, "amplitude": 36.149, "phase_angle": 12.878, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.698, "filter_rmsd": 0.044, "frame": { "rmsd": 0.009, "origin": [ 150.678, 156.177, 120.696 ], "x_axis": [ 0.351, 0.926, 0.141 ], "y_axis": [ -0.505, 0.314, -0.804 ], "z_axis": [ -0.788, 0.211, 0.578 ], "quaternion": [ 0.749, -0.339, -0.310, 0.478 ] } }, { "index": 951, "index_chain": 951, "chain_name": "A", "nt_resnum": 975, "nt_name": "C", "nt_code": "C", "nt_id": "///A/975", "linked_nts": [ "///A/974", "///A/976" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 15.222, "beta": 118.934, "gamma": 14.776, "delta": 79.260, "epsilon": -162.869, "zeta": -84.226, "epsilon_zeta": -78.643, "bb_type": "BI", "chi": -159.689, "glyco_bond": "anti", "C5prime_xyz": [ -1.604, 8.860, 0.479 ], "P_xyz": [ 0.851, 8.719, 1.346 ], "form": ".", "ssZp": 4.311, "Dp": 4.442, "splay_angle": 13.331, "splay_distance": 2.350, "splay_ratio": 0.125, "d22": 4.278, "d64": 4.033, "eta": 169.987, "theta": -123.862, "eta_prime": -174.854, "theta_prime": -133.756, "eta_base": -131.175, "theta_base": -116.849, "v0": -2.860, "v1": -20.348, "v2": 34.495, "v3": -37.181, "v4": 25.212, "amplitude": 37.453, "phase_angle": 22.927, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 149.046, 157.196, 123.641 ], "x_axis": [ 0.027, 0.921, -0.388 ], "y_axis": [ -0.627, -0.287, -0.724 ], "z_axis": [ -0.778, 0.264, 0.570 ], "quaternion": [ 0.572, -0.431, -0.170, 0.676 ] } }, { "index": 952, "index_chain": 952, "chain_name": "A", "nt_resnum": 976, "nt_name": "U", "nt_code": "U", "nt_id": "///A/976", "linked_nts": [ "///A/975", "///A/977" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 161.880, "beta": -151.376, "gamma": 162.487, "delta": 81.900, "epsilon": -150.695, "zeta": -98.820, "epsilon_zeta": -51.875, "bb_type": "BI", "chi": -156.036, "glyco_bond": "anti", "C5prime_xyz": [ -1.469, 8.807, 0.297 ], "P_xyz": [ 0.242, 9.740, -1.433 ], "form": ".", "ssZp": 4.212, "Dp": 4.497, "splay_angle": 30.582, "splay_distance": 4.881, "splay_ratio": 0.264, "d22": 4.134, "d64": 4.422, "eta": 157.225, "theta": -140.455, "eta_prime": 174.856, "theta_prime": -144.216, "eta_base": -147.900, "theta_base": -103.865, "v0": -1.559, "v1": -20.259, "v2": 33.167, "v3": -35.036, "v4": 23.085, "amplitude": 35.554, "phase_angle": 21.116, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.464, "filter_rmsd": 0.099, "frame": { "rmsd": 0.008, "origin": [ 148.645, 158.755, 125.354 ], "x_axis": [ -0.244, 0.688, -0.684 ], "y_axis": [ -0.839, -0.503, -0.206 ], "z_axis": [ -0.486, 0.523, 0.700 ], "quaternion": [ 0.488, -0.374, 0.101, 0.782 ] } }, { "index": 953, "index_chain": 953, "chain_name": "A", "nt_resnum": 977, "nt_name": "U", "nt_code": "U", "nt_id": "///A/977", "linked_nts": [ "///A/976", "///A/978" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 146.120, "beta": -120.459, "gamma": 169.335, "delta": 82.993, "epsilon": -82.263, "zeta": -138.198, "epsilon_zeta": 55.934, "bb_type": "--", "chi": -174.591, "glyco_bond": "anti", "C5prime_xyz": [ -1.374, 8.495, 1.392 ], "P_xyz": [ 0.508, 9.267, -0.240 ], "form": ".", "ssZp": 4.292, "Dp": 4.581, "splay_angle": 17.328, "splay_distance": 2.881, "splay_ratio": 0.151, "d22": null, "d64": null, "eta": 179.219, "theta": -137.803, "eta_prime": -162.479, "theta_prime": -138.734, "eta_base": -106.924, "theta_base": -130.082, "v0": 2.605, "v1": -24.052, "v2": 35.155, "v3": -34.628, "v4": 20.194, "amplitude": 36.327, "phase_angle": 14.591, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.119, "filter_rmsd": 0.105, "frame": { "rmsd": 0.006, "origin": [ 145.543, 162.501, 125.766 ], "x_axis": [ -0.758, 0.138, -0.637 ], "y_axis": [ -0.466, -0.799, 0.381 ], "z_axis": [ -0.456, 0.586, 0.670 ], "quaternion": [ 0.168, -0.304, 0.269, 0.898 ] } }, { "index": 954, "index_chain": 954, "chain_name": "A", "nt_resnum": 978, "nt_name": "A", "nt_code": "A", "nt_id": "///A/978", "linked_nts": [ "///A/977", "///A/979" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,internal-loop,phosphate", "alpha": 87.699, "beta": -102.730, "gamma": -157.626, "delta": 151.839, "epsilon": -99.656, "zeta": 170.273, "epsilon_zeta": 90.071, "bb_type": "BII", "chi": -153.898, "glyco_bond": "anti", "C5prime_xyz": [ -2.211, 8.589, 0.715 ], "P_xyz": [ -0.369, 9.595, -0.841 ], "form": ".", "ssZp": 0.607, "Dp": 0.872, "splay_angle": 35.653, "splay_distance": 6.043, "splay_ratio": 0.307, "d22": null, "d64": null, "eta": -127.968, "theta": 129.563, "eta_prime": -137.692, "theta_prime": 152.297, "eta_base": -125.148, "theta_base": -174.405, "v0": -22.754, "v1": 39.051, "v2": -39.445, "v3": 27.242, "v4": -3.036, "amplitude": 40.753, "phase_angle": 165.442, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.008, "origin": [ 144.240, 164.866, 126.768 ], "x_axis": [ -0.550, -0.490, -0.676 ], "y_axis": [ -0.291, -0.647, 0.705 ], "z_axis": [ -0.783, 0.585, 0.213 ], "quaternion": [ -0.064, -0.470, 0.415, 0.776 ] } }, { "index": 955, "index_chain": 955, "chain_name": "A", "nt_resnum": 979, "nt_name": "U", "nt_code": "U", "nt_id": "///A/979", "linked_nts": [ "///A/978", "///A/980" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": 80.901, "beta": -117.653, "gamma": -166.090, "delta": 83.209, "epsilon": -159.918, "zeta": -53.691, "epsilon_zeta": -106.228, "bb_type": "BI", "chi": 174.745, "glyco_bond": "anti", "C5prime_xyz": [ -1.773, 8.389, 1.882 ], "P_xyz": [ -0.188, 10.001, 0.555 ], "form": "A", "ssZp": 4.125, "Dp": 4.389, "splay_angle": 20.341, "splay_distance": 3.189, "splay_ratio": 0.180, "d22": 4.402, "d64": 3.798, "eta": -179.674, "theta": -160.096, "eta_prime": -173.607, "theta_prime": -151.031, "eta_base": -134.383, "theta_base": -108.982, "v0": -1.390, "v1": -20.402, "v2": 33.097, "v3": -34.804, "v4": 22.823, "amplitude": 35.395, "phase_angle": 20.761, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "4n", "suiteness": 0.117, "filter_rmsd": 0.109, "frame": { "rmsd": 0.011, "origin": [ 146.379, 170.175, 128.709 ], "x_axis": [ -0.958, 0.278, 0.069 ], "y_axis": [ -0.142, -0.671, 0.727 ], "z_axis": [ 0.248, 0.687, 0.683 ], "quaternion": [ 0.115, 0.087, 0.389, 0.910 ] } }, { "index": 956, "index_chain": 956, "chain_name": "A", "nt_resnum": 980, "nt_name": "C", "nt_code": "C", "nt_id": "///A/980", "linked_nts": [ "///A/979", "///A/981" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -87.388, "beta": -156.271, "gamma": 64.331, "delta": 151.354, "epsilon": -171.112, "zeta": -105.032, "epsilon_zeta": -66.079, "bb_type": "BI", "chi": -125.184, "glyco_bond": "anti", "C5prime_xyz": [ -1.701, 8.582, -0.843 ], "P_xyz": [ 0.605, 9.146, 0.295 ], "form": ".", "ssZp": 2.183, "Dp": 2.131, "splay_angle": 30.726, "splay_distance": 5.093, "splay_ratio": 0.267, "d22": 4.739, "d64": 4.909, "eta": 161.133, "theta": -123.738, "eta_prime": -158.249, "theta_prime": -147.458, "eta_base": -103.762, "theta_base": -109.573, "v0": -19.968, "v1": 36.158, "v2": -37.479, "v3": 26.834, "v4": -4.485, "amplitude": 38.336, "phase_angle": 167.863, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.256, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 145.837, 173.041, 129.998 ], "x_axis": [ -0.771, -0.338, 0.539 ], "y_axis": [ 0.623, -0.572, 0.534 ], "z_axis": [ 0.128, 0.748, 0.651 ], "quaternion": [ -0.278, 0.193, 0.370, 0.865 ] } }, { "index": 957, "index_chain": 957, "chain_name": "A", "nt_resnum": 981, "nt_name": "C", "nt_code": "C", "nt_id": "///A/981", "linked_nts": [ "///A/980", "///A/982" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -85.683, "beta": -176.061, "gamma": 51.481, "delta": 79.757, "epsilon": -160.643, "zeta": -70.619, "epsilon_zeta": -90.024, "bb_type": "BI", "chi": -160.522, "glyco_bond": "anti", "C5prime_xyz": [ -1.590, 8.909, 0.465 ], "P_xyz": [ 0.796, 9.754, 1.119 ], "form": "A", "ssZp": 4.276, "Dp": 4.424, "splay_angle": 25.864, "splay_distance": 4.176, "splay_ratio": 0.225, "d22": 4.396, "d64": 4.453, "eta": 159.133, "theta": -156.187, "eta_prime": 165.828, "theta_prime": -154.204, "eta_base": -138.033, "theta_base": -131.074, "v0": -4.097, "v1": -18.909, "v2": 33.286, "v3": -36.584, "v4": 25.687, "amplitude": 36.685, "phase_angle": 24.856, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.008, "origin": [ 146.220, 177.301, 132.762 ], "x_axis": [ -0.223, -0.642, 0.734 ], "y_axis": [ 0.840, -0.508, -0.189 ], "z_axis": [ 0.494, 0.575, 0.652 ], "quaternion": [ -0.480, 0.398, 0.125, 0.772 ] } }, { "index": 958, "index_chain": 958, "chain_name": "A", "nt_resnum": 982, "nt_name": "U", "nt_code": "U", "nt_id": "///A/982", "linked_nts": [ "///A/981", "///A/983" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -67.961, "beta": -178.811, "gamma": 50.215, "delta": 81.210, "epsilon": -151.788, "zeta": -73.987, "epsilon_zeta": -77.801, "bb_type": "BI", "chi": -167.576, "glyco_bond": "anti", "C5prime_xyz": [ -1.512, 8.722, 0.958 ], "P_xyz": [ 0.891, 9.267, 1.846 ], "form": "A", "ssZp": 4.419, "Dp": 4.502, "splay_angle": 20.975, "splay_distance": 3.328, "splay_ratio": 0.183, "d22": 4.361, "d64": 4.123, "eta": 169.519, "theta": -149.510, "eta_prime": 178.653, "theta_prime": -146.466, "eta_base": -149.141, "theta_base": -117.597, "v0": -1.273, "v1": -20.844, "v2": 33.779, "v3": -35.472, "v4": 23.164, "amplitude": 36.085, "phase_angle": 20.595, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.874, "filter_rmsd": 0.104, "frame": { "rmsd": 0.006, "origin": [ 146.791, 180.332, 135.578 ], "x_axis": [ 0.054, -0.926, 0.374 ], "y_axis": [ 0.776, -0.197, -0.599 ], "z_axis": [ 0.629, 0.322, 0.708 ], "quaternion": [ 0.625, -0.368, 0.102, -0.680 ] } }, { "index": 959, "index_chain": 959, "chain_name": "A", "nt_resnum": 983, "nt_name": "U", "nt_code": "U", "nt_id": "///A/983", "linked_nts": [ "///A/982", "///A/984" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -60.914, "beta": 176.569, "gamma": 43.827, "delta": 81.149, "epsilon": -148.029, "zeta": -76.699, "epsilon_zeta": -71.330, "bb_type": "BI", "chi": -157.992, "glyco_bond": "anti", "C5prime_xyz": [ -1.346, 8.719, 0.419 ], "P_xyz": [ 1.185, 9.151, 0.921 ], "form": "A", "ssZp": 4.334, "Dp": 4.617, "splay_angle": 21.049, "splay_distance": 3.377, "splay_ratio": 0.184, "d22": null, "d64": null, "eta": 165.905, "theta": -148.552, "eta_prime": 177.392, "theta_prime": -147.911, "eta_base": -142.667, "theta_base": -125.357, "v0": 1.835, "v1": -24.036, "v2": 35.963, "v3": -35.905, "v4": 21.467, "amplitude": 37.391, "phase_angle": 15.886, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.816, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 147.648, 181.110, 138.698 ], "x_axis": [ 0.432, -0.898, -0.082 ], "y_axis": [ 0.653, 0.374, -0.659 ], "z_axis": [ 0.622, 0.231, 0.748 ], "quaternion": [ 0.799, -0.278, 0.220, -0.485 ] } }, { "index": 960, "index_chain": 960, "chain_name": "A", "nt_resnum": 984, "nt_name": "G", "nt_code": "G", "nt_id": "///A/984", "linked_nts": [ "///A/983", "///A/985" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -59.050, "beta": 164.924, "gamma": 49.340, "delta": 78.043, "epsilon": -156.752, "zeta": -75.377, "epsilon_zeta": -81.375, "bb_type": "BI", "chi": -167.282, "glyco_bond": "anti", "C5prime_xyz": [ -1.524, 8.715, 0.913 ], "P_xyz": [ 1.019, 9.261, 1.111 ], "form": ".", "ssZp": 4.575, "Dp": 4.617, "splay_angle": 29.465, "splay_distance": 4.635, "splay_ratio": 0.259, "d22": null, "d64": null, "eta": 160.972, "theta": -155.808, "eta_prime": 174.186, "theta_prime": -155.703, "eta_base": -147.138, "theta_base": -139.891, "v0": 1.522, "v1": -25.341, "v2": 38.210, "v3": -38.364, "v4": 23.210, "amplitude": 39.840, "phase_angle": 16.444, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.906, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 148.926, 180.822, 141.811 ], "x_axis": [ 0.551, -0.645, -0.530 ], "y_axis": [ 0.400, 0.761, -0.510 ], "z_axis": [ 0.732, 0.069, 0.677 ], "quaternion": [ 0.864, -0.168, 0.365, -0.302 ] } }, { "index": 961, "index_chain": 961, "chain_name": "A", "nt_resnum": 985, "nt_name": "G", "nt_code": "G", "nt_id": "///A/985", "linked_nts": [ "///A/984", "///A/986" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -60.923, "beta": 179.385, "gamma": 51.512, "delta": 78.924, "epsilon": -145.345, "zeta": -68.664, "epsilon_zeta": -76.680, "bb_type": "BI", "chi": -179.856, "glyco_bond": "anti", "C5prime_xyz": [ -1.740, 8.527, 1.627 ], "P_xyz": [ 0.612, 8.990, 2.666 ], "form": "A", "ssZp": 4.625, "Dp": 4.628, "splay_angle": 25.233, "splay_distance": 4.021, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 175.258, "theta": -141.829, "eta_prime": -178.580, "theta_prime": -138.909, "eta_base": -152.928, "theta_base": -104.114, "v0": -0.478, "v1": -23.000, "v2": 36.474, "v3": -37.726, "v4": 24.087, "amplitude": 38.644, "phase_angle": 19.291, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.910, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 150.767, 179.391, 145.816 ], "x_axis": [ 0.414, -0.315, -0.854 ], "y_axis": [ -0.019, 0.935, -0.354 ], "z_axis": [ 0.910, 0.163, 0.381 ], "quaternion": [ 0.826, -0.157, 0.534, -0.090 ] } }, { "index": 962, "index_chain": 962, "chain_name": "A", "nt_resnum": 986, "nt_name": "G", "nt_code": "G", "nt_id": "///A/986", "linked_nts": [ "///A/985", "///A/987" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate", "alpha": -62.622, "beta": 178.125, "gamma": 47.379, "delta": 77.614, "epsilon": -117.834, "zeta": -101.374, "epsilon_zeta": -16.460, "bb_type": "--", "chi": -172.405, "glyco_bond": "anti", "C5prime_xyz": [ -1.499, 8.653, 1.217 ], "P_xyz": [ 0.948, 9.175, 1.967 ], "form": ".", "ssZp": 4.632, "Dp": 4.783, "splay_angle": 27.600, "splay_distance": 5.320, "splay_ratio": 0.264, "d22": null, "d64": null, "eta": 171.488, "theta": -131.880, "eta_prime": -177.243, "theta_prime": -142.600, "eta_base": -130.527, "theta_base": -162.336, "v0": 2.077, "v1": -26.034, "v2": 38.758, "v3": -38.583, "v4": 23.022, "amplitude": 40.257, "phase_angle": 15.684, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.900, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 154.432, 177.866, 146.463 ], "x_axis": [ 0.261, 0.343, -0.902 ], "y_axis": [ -0.340, 0.907, 0.247 ], "z_axis": [ 0.903, 0.243, 0.354 ], "quaternion": [ 0.794, 0.001, 0.568, 0.215 ] } }, { "index": 963, "index_chain": 963, "chain_name": "A", "nt_resnum": 987, "nt_name": "A", "nt_code": "A", "nt_id": "///A/987", "linked_nts": [ "///A/986", "///A/988" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,bulge,ribose-zipper,phosphate", "alpha": 74.143, "beta": -110.708, "gamma": -105.864, "delta": 81.604, "epsilon": -134.911, "zeta": -71.104, "epsilon_zeta": -63.807, "bb_type": "BI", "chi": 175.300, "glyco_bond": "anti", "C5prime_xyz": [ -1.914, 8.420, 1.824 ], "P_xyz": [ -2.366, 10.924, 1.215 ], "form": ".", "ssZp": 4.449, "Dp": 4.528, "splay_angle": 24.364, "splay_distance": 3.740, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": -158.757, "theta": 165.308, "eta_prime": -163.613, "theta_prime": -174.970, "eta_base": -174.984, "theta_base": -108.839, "v0": -3.547, "v1": -18.836, "v2": 32.634, "v3": -35.655, "v4": 24.769, "amplitude": 35.778, "phase_angle": 24.198, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 157.798, 174.200, 148.342 ], "x_axis": [ 0.307, 0.198, -0.931 ], "y_axis": [ -0.247, 0.961, 0.124 ], "z_axis": [ 0.919, 0.192, 0.344 ], "quaternion": [ 0.808, -0.021, 0.573, 0.138 ] } }, { "index": 964, "index_chain": 964, "chain_name": "A", "nt_resnum": 988, "nt_name": "G", "nt_code": "G", "nt_id": "///A/988", "linked_nts": [ "///A/987", "///A/989" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor,ribose-zipper", "alpha": -75.075, "beta": 169.132, "gamma": 56.928, "delta": 84.746, "epsilon": -174.175, "zeta": -77.973, "epsilon_zeta": -96.202, "bb_type": "BI", "chi": -168.284, "glyco_bond": "anti", "C5prime_xyz": [ -1.164, 8.606, 1.077 ], "P_xyz": [ 1.424, 8.708, 1.455 ], "form": "A", "ssZp": 4.315, "Dp": 4.358, "splay_angle": 24.488, "splay_distance": 3.819, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 152.934, "theta": -130.550, "eta_prime": 177.606, "theta_prime": -135.691, "eta_base": -104.972, "theta_base": -107.794, "v0": 2.518, "v1": -23.004, "v2": 33.563, "v3": -33.048, "v4": 19.300, "amplitude": 34.676, "phase_angle": 14.558, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.821, "filter_rmsd": 0.019, "frame": { "rmsd": 0.019, "origin": [ 161.346, 175.143, 147.623 ], "x_axis": [ -0.062, 0.892, -0.448 ], "y_axis": [ -0.408, 0.387, 0.827 ], "z_axis": [ 0.911, 0.234, 0.340 ], "quaternion": [ 0.645, 0.230, 0.527, 0.504 ] } }, { "index": 965, "index_chain": 965, "chain_name": "A", "nt_resnum": 989, "nt_name": "U", "nt_code": "U", "nt_id": "///A/989", "linked_nts": [ "///A/988", "///A/990" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -175.036, "beta": -137.868, "gamma": 136.848, "delta": 83.297, "epsilon": -95.379, "zeta": -108.411, "epsilon_zeta": 13.032, "bb_type": "--", "chi": 177.370, "glyco_bond": "anti", "C5prime_xyz": [ -1.808, 8.517, 1.713 ], "P_xyz": [ 0.751, 9.001, 1.565 ], "form": ".", "ssZp": 4.177, "Dp": 4.318, "splay_angle": 27.007, "splay_distance": 4.403, "splay_ratio": 0.234, "d22": 5.379, "d64": 4.875, "eta": 176.208, "theta": -136.726, "eta_prime": -169.839, "theta_prime": -134.879, "eta_base": -127.384, "theta_base": -115.876, "v0": -4.490, "v1": -17.116, "v2": 30.827, "v3": -34.327, "v4": 24.478, "amplitude": 34.285, "phase_angle": 25.953, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.108, "frame": { "rmsd": 0.012, "origin": [ 164.973, 176.308, 147.365 ], "x_axis": [ -0.433, 0.897, 0.085 ], "y_axis": [ -0.345, -0.253, 0.904 ], "z_axis": [ 0.833, 0.362, 0.419 ], "quaternion": [ 0.428, 0.316, 0.436, 0.725 ] } }, { "index": 966, "index_chain": 966, "chain_name": "A", "nt_resnum": 990, "nt_name": "C", "nt_code": "C", "nt_id": "///A/990", "linked_nts": [ "///A/989", "///A/991" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-pair-contact,junction-loop,splayed-apart", "alpha": -52.714, "beta": 149.684, "gamma": 44.947, "delta": 81.478, "epsilon": -103.266, "zeta": 112.668, "epsilon_zeta": 144.065, "bb_type": "--", "chi": -146.087, "glyco_bond": "anti", "C5prime_xyz": [ -1.666, 8.869, -0.340 ], "P_xyz": [ 0.891, 9.272, -0.619 ], "form": ".", "ssZp": 3.274, "Dp": 4.514, "splay_angle": 152.914, "splay_distance": 18.469, "splay_ratio": 0.972, "d22": null, "d64": null, "eta": 168.233, "theta": 124.442, "eta_prime": -179.876, "theta_prime": 117.012, "eta_base": -153.700, "theta_base": -174.890, "v0": -3.896, "v1": -18.381, "v2": 32.318, "v3": -35.537, "v4": 24.886, "amplitude": 35.598, "phase_angle": 24.790, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.394, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 168.866, 178.107, 148.366 ], "x_axis": [ -0.676, 0.556, 0.484 ], "y_axis": [ -0.009, -0.663, 0.749 ], "z_axis": [ 0.737, 0.502, 0.453 ], "quaternion": [ 0.169, 0.365, 0.374, 0.836 ] } }, { "index": 967, "index_chain": 967, "chain_name": "A", "nt_resnum": 991, "nt_name": "A", "nt_code": "A", "nt_id": "///A/991", "linked_nts": [ "///A/990", "///A/992" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BI,non-stack,non-pair-contact,junction-loop,splayed-apart", "alpha": 7.130, "beta": 78.082, "gamma": 154.501, "delta": 143.465, "epsilon": -140.315, "zeta": -38.499, "epsilon_zeta": -101.817, "bb_type": "BI", "chi": -105.963, "glyco_bond": "anti", "C5prime_xyz": [ -2.183, 8.192, -1.929 ], "P_xyz": [ -2.398, 7.424, -4.439 ], "form": ".", "ssZp": 1.681, "Dp": 1.824, "splay_angle": 121.234, "splay_distance": 18.672, "splay_ratio": 0.872, "d22": null, "d64": null, "eta": 32.202, "theta": -117.728, "eta_prime": -7.849, "theta_prime": -95.338, "eta_base": -91.456, "theta_base": -95.104, "v0": -22.090, "v1": 34.801, "v2": -33.507, "v3": 21.634, "v4": 0.088, "amplitude": 35.421, "phase_angle": 161.081, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 179.798, 169.094, 160.213 ], "x_axis": [ -0.356, -0.159, 0.921 ], "y_axis": [ -0.903, -0.196, -0.383 ], "z_axis": [ 0.242, -0.968, -0.073 ], "quaternion": [ 0.306, 0.478, -0.555, 0.608 ] } }, { "index": 968, "index_chain": 968, "chain_name": "A", "nt_resnum": 992, "nt_name": "G", "nt_code": "G", "nt_id": "///A/992", "linked_nts": [ "///A/991", "///A/993" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,phosphate,splayed-apart", "alpha": 133.372, "beta": -158.614, "gamma": -103.592, "delta": 83.417, "epsilon": -155.079, "zeta": -71.418, "epsilon_zeta": -83.661, "bb_type": "BI", "chi": -169.005, "glyco_bond": "anti", "C5prime_xyz": [ -1.466, 8.670, 1.073 ], "P_xyz": [ -1.251, 11.278, 1.094 ], "form": "A", "ssZp": 4.430, "Dp": 4.498, "splay_angle": 22.568, "splay_distance": 3.521, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": -132.007, "theta": 163.050, "eta_prime": -95.742, "theta_prime": 179.850, "eta_base": -62.165, "theta_base": -141.523, "v0": 1.062, "v1": -22.407, "v2": 33.904, "v3": -34.268, "v4": 20.971, "amplitude": 35.441, "phase_angle": 16.933, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 166.061, 159.262, 152.257 ], "x_axis": [ -0.326, 0.169, -0.930 ], "y_axis": [ 0.663, 0.742, -0.097 ], "z_axis": [ 0.674, -0.649, -0.354 ], "quaternion": [ 0.515, 0.268, 0.778, -0.240 ] } }, { "index": 969, "index_chain": 969, "chain_name": "A", "nt_resnum": 993, "nt_name": "A", "nt_code": "A", "nt_id": "///A/993", "linked_nts": [ "///A/992", "///A/994" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -73.119, "beta": -178.666, "gamma": 54.764, "delta": 84.287, "epsilon": -148.970, "zeta": -74.331, "epsilon_zeta": -74.640, "bb_type": "BI", "chi": -160.119, "glyco_bond": "anti", "C5prime_xyz": [ -1.258, 8.655, 0.574 ], "P_xyz": [ 1.307, 8.958, 1.015 ], "form": "A", "ssZp": 4.368, "Dp": 4.573, "splay_angle": 25.290, "splay_distance": 3.997, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 168.750, "theta": -144.577, "eta_prime": -179.559, "theta_prime": -142.906, "eta_base": -141.037, "theta_base": -116.935, "v0": 3.053, "v1": -23.716, "v2": 34.201, "v3": -33.395, "v4": 19.181, "amplitude": 35.214, "phase_angle": 13.776, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.896, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 167.193, 156.183, 150.978 ], "x_axis": [ 0.078, 0.599, -0.797 ], "y_axis": [ 0.751, 0.491, 0.442 ], "z_axis": [ 0.656, -0.633, -0.411 ], "quaternion": [ 0.538, 0.500, 0.675, -0.071 ] } }, { "index": 970, "index_chain": 970, "chain_name": "A", "nt_resnum": 994, "nt_name": "C", "nt_code": "C", "nt_id": "///A/994", "linked_nts": [ "///A/993", "///A/995" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -68.518, "beta": 166.989, "gamma": 62.725, "delta": 81.265, "epsilon": -159.404, "zeta": -65.733, "epsilon_zeta": -93.671, "bb_type": "BI", "chi": -163.177, "glyco_bond": "anti", "C5prime_xyz": [ -1.381, 8.743, 0.701 ], "P_xyz": [ 1.202, 9.135, 0.556 ], "form": "A", "ssZp": 4.470, "Dp": 4.555, "splay_angle": 21.626, "splay_distance": 3.456, "splay_ratio": 0.191, "d22": 4.207, "d64": 4.294, "eta": 166.425, "theta": -145.223, "eta_prime": -176.314, "theta_prime": -148.958, "eta_base": -134.118, "theta_base": -128.998, "v0": 1.400, "v1": -23.994, "v2": 36.186, "v3": -36.347, "v4": 22.050, "amplitude": 37.741, "phase_angle": 16.507, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.826, "filter_rmsd": 0.059, "frame": { "rmsd": 0.009, "origin": [ 168.893, 153.763, 148.289 ], "x_axis": [ 0.439, 0.794, -0.420 ], "y_axis": [ 0.601, 0.088, 0.794 ], "z_axis": [ 0.668, -0.601, -0.439 ], "quaternion": [ 0.522, 0.669, 0.522, 0.093 ] } }, { "index": 971, "index_chain": 971, "chain_name": "A", "nt_resnum": 995, "nt_name": "U", "nt_code": "U", "nt_id": "///A/995", "linked_nts": [ "///A/994", "///A/996" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -76.379, "beta": 178.675, "gamma": 58.893, "delta": 79.402, "epsilon": -155.901, "zeta": -71.867, "epsilon_zeta": -84.034, "bb_type": "BI", "chi": -165.441, "glyco_bond": "anti", "C5prime_xyz": [ -1.505, 8.681, 0.819 ], "P_xyz": [ 1.031, 9.261, 1.047 ], "form": "A", "ssZp": 4.544, "Dp": 4.608, "splay_angle": 24.401, "splay_distance": 3.980, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 164.577, "theta": -152.097, "eta_prime": 177.623, "theta_prime": -152.874, "eta_base": -144.078, "theta_base": -139.534, "v0": 1.435, "v1": -24.584, "v2": 37.098, "v3": -37.284, "v4": 22.585, "amplitude": 38.694, "phase_angle": 16.513, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.808, "filter_rmsd": 0.098, "frame": { "rmsd": 0.009, "origin": [ 170.144, 152.260, 145.439 ], "x_axis": [ 0.617, 0.783, 0.078 ], "y_axis": [ 0.340, -0.354, 0.871 ], "z_axis": [ 0.710, -0.511, -0.485 ], "quaternion": [ 0.441, 0.784, 0.358, 0.251 ] } }, { "index": 972, "index_chain": 972, "chain_name": "A", "nt_resnum": 996, "nt_name": "G", "nt_code": "G", "nt_id": "///A/996", "linked_nts": [ "///A/995", "///A/997" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.464, "beta": 177.953, "gamma": 52.372, "delta": 78.331, "epsilon": -145.619, "zeta": -70.339, "epsilon_zeta": -75.280, "bb_type": "BI", "chi": -170.257, "glyco_bond": "anti", "C5prime_xyz": [ -1.758, 8.705, 1.076 ], "P_xyz": [ 0.662, 9.448, 1.719 ], "form": "A", "ssZp": 4.599, "Dp": 4.643, "splay_angle": 24.447, "splay_distance": 3.885, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 170.055, "theta": -144.849, "eta_prime": 178.242, "theta_prime": -142.046, "eta_base": -156.604, "theta_base": -103.253, "v0": -0.783, "v1": -22.821, "v2": 36.343, "v3": -37.863, "v4": 24.368, "amplitude": 38.618, "phase_angle": 19.765, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.939, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 171.601, 151.482, 141.818 ], "x_axis": [ 0.533, 0.667, 0.520 ], "y_axis": [ 0.043, -0.636, 0.771 ], "z_axis": [ 0.845, -0.389, -0.367 ], "quaternion": [ 0.364, 0.796, 0.223, 0.429 ] } }, { "index": 973, "index_chain": 973, "chain_name": "A", "nt_resnum": 997, "nt_name": "C", "nt_code": "C", "nt_id": "///A/997", "linked_nts": [ "///A/996", "///A/998" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -67.714, "beta": 169.525, "gamma": 57.813, "delta": 78.546, "epsilon": -151.474, "zeta": -64.004, "epsilon_zeta": -87.470, "bb_type": "BI", "chi": -169.611, "glyco_bond": "anti", "C5prime_xyz": [ -1.493, 8.698, 1.060 ], "P_xyz": [ 1.055, 9.235, 1.243 ], "form": "A", "ssZp": 4.623, "Dp": 4.649, "splay_angle": 22.160, "splay_distance": 3.645, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 163.904, "theta": -141.359, "eta_prime": -179.642, "theta_prime": -142.227, "eta_base": -124.094, "theta_base": -116.183, "v0": 1.315, "v1": -25.036, "v2": 37.856, "v3": -38.119, "v4": 23.180, "amplitude": 39.522, "phase_angle": 16.697, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.935, "filter_rmsd": 0.059, "frame": { "rmsd": 0.006, "origin": [ 175.274, 152.160, 140.750 ], "x_axis": [ 0.372, 0.118, 0.921 ], "y_axis": [ -0.296, -0.925, 0.238 ], "z_axis": [ 0.880, -0.361, -0.309 ], "quaternion": [ 0.186, 0.807, -0.055, 0.558 ] } }, { "index": 974, "index_chain": 974, "chain_name": "A", "nt_resnum": 998, "nt_name": "G", "nt_code": "G", "nt_id": "///A/998", "linked_nts": [ "///A/997", "///A/999" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -73.242, "beta": -174.623, "gamma": 50.629, "delta": 77.664, "epsilon": -151.990, "zeta": -68.998, "epsilon_zeta": -82.992, "bb_type": "BI", "chi": -162.360, "glyco_bond": "anti", "C5prime_xyz": [ -1.485, 8.796, 0.604 ], "P_xyz": [ 0.989, 9.513, 1.066 ], "form": "A", "ssZp": 4.505, "Dp": 4.652, "splay_angle": 20.411, "splay_distance": 3.493, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": 163.257, "theta": -150.395, "eta_prime": 175.658, "theta_prime": -149.211, "eta_base": -142.023, "theta_base": -138.494, "v0": 0.916, "v1": -24.611, "v2": 37.590, "v3": -38.105, "v4": 23.445, "amplitude": 39.370, "phase_angle": 17.295, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.859, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 178.828, 152.971, 140.695 ], "x_axis": [ -0.024, -0.376, 0.926 ], "y_axis": [ -0.370, -0.857, -0.357 ], "z_axis": [ 0.929, -0.352, -0.119 ], "quaternion": [ -0.002, 0.699, -0.267, 0.664 ] } }, { "index": 975, "index_chain": 975, "chain_name": "A", "nt_resnum": 999, "nt_name": "A", "nt_code": "A", "nt_id": "///A/999", "linked_nts": [ "///A/998", "///A/1000" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -70.522, "beta": 178.481, "gamma": 53.510, "delta": 78.099, "epsilon": 173.311, "zeta": -81.063, "epsilon_zeta": -105.626, "bb_type": "BI", "chi": -160.871, "glyco_bond": "anti", "C5prime_xyz": [ -1.952, 8.814, 0.481 ], "P_xyz": [ 0.417, 9.859, 0.810 ], "form": ".", "ssZp": 4.232, "Dp": 4.240, "splay_angle": 28.624, "splay_distance": 4.641, "splay_ratio": 0.253, "d22": null, "d64": null, "eta": 162.604, "theta": -150.053, "eta_prime": 176.979, "theta_prime": -153.904, "eta_base": -158.990, "theta_base": -129.514, "v0": -4.561, "v1": -19.389, "v2": 34.514, "v3": -38.140, "v4": 26.913, "amplitude": 38.177, "phase_angle": 25.306, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.923, "filter_rmsd": 0.038, "frame": { "rmsd": 0.010, "origin": [ 182.119, 153.888, 141.422 ], "x_axis": [ -0.439, -0.549, 0.711 ], "y_axis": [ -0.220, -0.702, -0.678 ], "z_axis": [ 0.871, -0.454, 0.188 ], "quaternion": [ -0.108, 0.518, -0.371, 0.763 ] } }, { "index": 976, "index_chain": 976, "chain_name": "A", "nt_resnum": 1000, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1000", "linked_nts": [ "///A/999", "///A/1001" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor", "alpha": 167.232, "beta": -142.116, "gamma": 166.219, "delta": 82.205, "epsilon": -112.647, "zeta": -85.023, "epsilon_zeta": -27.624, "bb_type": "--", "chi": 165.670, "glyco_bond": "anti", "C5prime_xyz": [ -1.894, 8.121, 2.345 ], "P_xyz": [ 0.314, 9.472, 1.983 ], "form": "A", "ssZp": 4.492, "Dp": 4.598, "splay_angle": 23.462, "splay_distance": 3.652, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": -177.545, "theta": -142.951, "eta_prime": -167.600, "theta_prime": -141.878, "eta_base": -129.471, "theta_base": -96.986, "v0": -0.771, "v1": -20.979, "v2": 33.475, "v3": -34.888, "v4": 22.458, "amplitude": 35.584, "phase_angle": 19.823, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.399, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 185.881, 153.203, 144.051 ], "x_axis": [ -0.481, -0.822, 0.305 ], "y_axis": [ -0.151, -0.265, -0.952 ], "z_axis": [ 0.864, -0.504, 0.003 ], "quaternion": [ -0.254, 0.442, -0.551, 0.661 ] } }, { "index": 977, "index_chain": 977, "chain_name": "A", "nt_resnum": 1001, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1001", "linked_nts": [ "///A/1000", "///A/1002" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -59.965, "beta": 158.303, "gamma": 48.171, "delta": 80.357, "epsilon": -112.747, "zeta": -108.637, "epsilon_zeta": -4.110, "bb_type": "--", "chi": -168.462, "glyco_bond": "anti", "C5prime_xyz": [ -1.521, 8.627, 1.019 ], "P_xyz": [ 1.060, 8.966, 1.265 ], "form": ".", "ssZp": 4.475, "Dp": 4.743, "splay_angle": 17.461, "splay_distance": 3.163, "splay_ratio": 0.163, "d22": null, "d64": null, "eta": 159.783, "theta": -114.880, "eta_prime": 177.120, "theta_prime": -127.672, "eta_base": -122.952, "theta_base": -114.186, "v0": 2.299, "v1": -24.805, "v2": 36.651, "v3": -36.365, "v4": 21.454, "amplitude": 37.986, "phase_angle": 15.232, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.324, "filter_rmsd": 0.104, "frame": { "rmsd": 0.005, "origin": [ 188.047, 150.495, 145.196 ], "x_axis": [ -0.449, -0.738, -0.503 ], "y_axis": [ 0.257, 0.433, -0.864 ], "z_axis": [ 0.856, -0.517, -0.005 ], "quaternion": [ 0.495, -0.175, 0.687, -0.503 ] } }, { "index": 978, "index_chain": 978, "chain_name": "A", "nt_resnum": 1002, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1002", "linked_nts": [ "///A/1001", "///A/1003" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": 110.671, "beta": -134.048, "gamma": -163.553, "delta": 81.152, "epsilon": 165.336, "zeta": 48.618, "epsilon_zeta": 116.718, "bb_type": "--", "chi": -172.434, "glyco_bond": "anti", "C5prime_xyz": [ -1.375, 8.584, 1.252 ], "P_xyz": [ -0.180, 10.270, -0.363 ], "form": ".", "ssZp": 4.168, "Dp": 4.222, "splay_angle": 104.717, "splay_distance": 11.664, "splay_ratio": 0.799, "d22": null, "d64": null, "eta": 161.395, "theta": -90.560, "eta_prime": 175.897, "theta_prime": -169.613, "eta_base": -149.242, "theta_base": 116.177, "v0": 2.700, "v1": -24.196, "v2": 35.191, "v3": -34.662, "v4": 20.225, "amplitude": 36.347, "phase_angle": 14.490, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 188.996, 147.614, 146.091 ], "x_axis": [ -0.576, -0.231, -0.785 ], "y_axis": [ 0.598, 0.536, -0.596 ], "z_axis": [ 0.558, -0.812, -0.171 ], "quaternion": [ 0.444, 0.122, 0.755, -0.466 ] } }, { "index": 979, "index_chain": 979, "chain_name": "A", "nt_resnum": 1003, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1003", "linked_nts": [ "///A/1002", "///A/1004" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,phosphate,splayed-apart", "alpha": 129.319, "beta": 87.908, "gamma": 55.238, "delta": 79.326, "epsilon": -144.282, "zeta": 104.680, "epsilon_zeta": 111.039, "bb_type": "--", "chi": -73.861, "glyco_bond": "--", "C5prime_xyz": [ -2.896, 6.534, -3.378 ], "P_xyz": [ -1.478, 4.386, -3.860 ], "form": ".", "ssZp": -1.237, "Dp": 4.674, "splay_angle": 126.390, "splay_distance": 18.204, "splay_ratio": 0.893, "d22": null, "d64": null, "eta": -35.957, "theta": 39.293, "eta_prime": 53.346, "theta_prime": 10.685, "eta_base": 46.024, "theta_base": -11.427, "v0": 3.082, "v1": -25.247, "v2": 36.735, "v3": -35.900, "v4": 20.694, "amplitude": 37.865, "phase_angle": 14.037, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 199.423, 150.569, 150.402 ], "x_axis": [ -0.761, 0.548, 0.347 ], "y_axis": [ -0.645, -0.695, -0.318 ], "z_axis": [ 0.067, -0.466, 0.882 ], "quaternion": [ 0.326, 0.113, -0.214, 0.914 ] } }, { "index": 980, "index_chain": 980, "chain_name": "A", "nt_resnum": 1004, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1004", "linked_nts": [ "///A/1003", "///A/1005" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BII,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -74.248, "beta": -138.564, "gamma": 0.544, "delta": 80.566, "epsilon": -136.446, "zeta": 154.405, "epsilon_zeta": 69.149, "bb_type": "BII", "chi": -148.275, "glyco_bond": "anti", "C5prime_xyz": [ -1.452, 8.751, -0.197 ], "P_xyz": [ -0.130, 10.527, 1.199 ], "form": ".", "ssZp": 3.964, "Dp": 4.708, "splay_angle": 136.937, "splay_distance": 19.286, "splay_ratio": 0.931, "d22": null, "d64": null, "eta": 177.623, "theta": 41.830, "eta_prime": -156.141, "theta_prime": 30.912, "eta_base": -124.403, "theta_base": 27.765, "v0": 1.986, "v1": -24.139, "v2": 35.881, "v3": -35.721, "v4": 21.293, "amplitude": 37.258, "phase_angle": 15.627, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 190.992, 143.899, 135.712 ], "x_axis": [ 0.541, -0.828, -0.151 ], "y_axis": [ 0.353, 0.060, 0.934 ], "z_axis": [ -0.764, -0.558, 0.324 ], "quaternion": [ 0.694, 0.538, -0.221, -0.425 ] } }, { "index": 981, "index_chain": 981, "chain_name": "A", "nt_resnum": 1005, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1005", "linked_nts": [ "///A/1004", "///A/1006" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -48.474, "beta": -132.364, "gamma": -91.550, "delta": 83.871, "epsilon": -84.234, "zeta": -132.458, "epsilon_zeta": 48.224, "bb_type": "--", "chi": -154.791, "glyco_bond": "anti", "C5prime_xyz": [ -1.421, 8.756, 0.229 ], "P_xyz": [ -1.719, 11.277, -0.389 ], "form": ".", "ssZp": 3.506, "Dp": 4.508, "splay_angle": 21.619, "splay_distance": 3.910, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 130.853, "theta": 161.825, "eta_prime": 133.921, "theta_prime": -176.618, "eta_base": 159.199, "theta_base": -109.415, "v0": 0.590, "v1": -21.580, "v2": 33.162, "v3": -33.761, "v4": 20.952, "amplitude": 34.807, "phase_angle": 17.685, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 195.336, 147.640, 154.126 ], "x_axis": [ 0.177, 0.937, -0.302 ], "y_axis": [ -0.501, -0.178, -0.847 ], "z_axis": [ -0.847, 0.301, 0.438 ], "quaternion": [ 0.599, -0.479, -0.227, 0.600 ] } }, { "index": 982, "index_chain": 982, "chain_name": "A", "nt_resnum": 1006, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1006", "linked_nts": [ "///A/1005", "///A/1007" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": -41.113, "beta": 111.446, "gamma": 49.739, "delta": 81.746, "epsilon": -98.037, "zeta": -106.628, "epsilon_zeta": 8.591, "bb_type": "--", "chi": -136.387, "glyco_bond": "anti", "C5prime_xyz": [ -1.233, 8.595, -0.898 ], "P_xyz": [ 0.949, 7.552, -1.889 ], "form": ".", "ssZp": 2.676, "Dp": 4.753, "splay_angle": 126.080, "splay_distance": 17.932, "splay_ratio": 0.891, "d22": null, "d64": null, "eta": 166.002, "theta": -116.045, "eta_prime": -178.141, "theta_prime": -143.998, "eta_base": -120.831, "theta_base": 177.573, "v0": 4.119, "v1": -25.654, "v2": 36.307, "v3": -34.931, "v4": 19.449, "amplitude": 37.177, "phase_angle": 12.419, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.039, "filter_rmsd": 0.039, "frame": { "rmsd": 0.005, "origin": [ 192.182, 149.524, 152.787 ], "x_axis": [ -0.018, 0.501, -0.865 ], "y_axis": [ -0.782, -0.546, -0.300 ], "z_axis": [ -0.623, 0.671, 0.402 ], "quaternion": [ 0.458, -0.531, 0.132, 0.701 ] } }, { "index": 983, "index_chain": 983, "chain_name": "A", "nt_resnum": 1007, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1007", "linked_nts": [ "///A/1006", "///A/1008" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,BII,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -116.853, "beta": -172.694, "gamma": -56.966, "delta": 81.341, "epsilon": -135.514, "zeta": 145.508, "epsilon_zeta": 78.978, "bb_type": "BII", "chi": -71.315, "glyco_bond": "--", "C5prime_xyz": [ -3.175, 6.530, -3.339 ], "P_xyz": [ -3.267, 8.010, -5.505 ], "form": ".", "ssZp": -1.552, "Dp": 4.615, "splay_angle": 133.872, "splay_distance": 18.739, "splay_ratio": 0.920, "d22": null, "d64": null, "eta": 13.601, "theta": 69.918, "eta_prime": 18.131, "theta_prime": 83.603, "eta_base": 16.233, "theta_base": 52.205, "v0": -0.953, "v1": -21.204, "v2": 34.055, "v3": -35.602, "v4": 23.014, "amplitude": 36.265, "phase_angle": 20.104, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 175.433, 147.111, 158.722 ], "x_axis": [ 0.320, -0.188, 0.929 ], "y_axis": [ 0.904, 0.353, -0.240 ], "z_axis": [ -0.283, 0.916, 0.283 ], "quaternion": [ 0.699, -0.413, -0.433, -0.391 ] } }, { "index": 984, "index_chain": 984, "chain_name": "A", "nt_resnum": 1008, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1008", "linked_nts": [ "///A/1007", "///A/1009" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,splayed-apart", "alpha": 163.885, "beta": -110.882, "gamma": 5.585, "delta": 81.887, "epsilon": -160.414, "zeta": -69.896, "epsilon_zeta": -90.518, "bb_type": "BI", "chi": -154.338, "glyco_bond": "anti", "C5prime_xyz": [ -1.567, 8.682, 0.186 ], "P_xyz": [ -0.765, 10.009, 2.278 ], "form": "A", "ssZp": 4.273, "Dp": 4.544, "splay_angle": 20.308, "splay_distance": 3.253, "splay_ratio": 0.178, "d22": null, "d64": null, "eta": 66.258, "theta": -179.925, "eta_prime": 46.087, "theta_prime": -169.421, "eta_base": 88.960, "theta_base": -134.909, "v0": 2.953, "v1": -25.189, "v2": 36.525, "v3": -35.793, "v4": 20.736, "amplitude": 37.672, "phase_angle": 14.172, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.014, "origin": [ 187.682, 150.797, 145.028 ], "x_axis": [ -0.497, -0.788, -0.363 ], "y_axis": [ -0.176, -0.317, 0.932 ], "z_axis": [ -0.850, 0.527, 0.019 ], "quaternion": [ -0.226, -0.448, 0.539, 0.677 ] } }, { "index": 985, "index_chain": 985, "chain_name": "A", "nt_resnum": 1009, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1009", "linked_nts": [ "///A/1008", "///A/1010" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor", "alpha": -73.027, "beta": 162.693, "gamma": 69.951, "delta": 75.621, "epsilon": 134.411, "zeta": 48.058, "epsilon_zeta": 86.352, "bb_type": "--", "chi": -167.847, "glyco_bond": "anti", "C5prime_xyz": [ -1.468, 8.703, 0.968 ], "P_xyz": [ 1.072, 9.279, 0.735 ], "form": "A", "ssZp": 3.817, "Dp": 3.862, "splay_angle": 22.362, "splay_distance": 3.850, "splay_ratio": 0.205, "d22": 4.159, "d64": 4.417, "eta": 172.221, "theta": -109.132, "eta_prime": -166.823, "theta_prime": -136.615, "eta_base": -128.695, "theta_base": -109.525, "v0": 1.370, "v1": -24.579, "v2": 37.139, "v3": -37.364, "v4": 22.774, "amplitude": 38.764, "phase_angle": 16.653, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.494, "filter_rmsd": 0.106, "frame": { "rmsd": 0.006, "origin": [ 185.320, 152.508, 143.587 ], "x_axis": [ -0.489, -0.866, 0.107 ], "y_axis": [ 0.007, 0.119, 0.993 ], "z_axis": [ -0.873, 0.486, -0.052 ], "quaternion": [ -0.380, -0.333, 0.644, 0.574 ] } }, { "index": 986, "index_chain": 986, "chain_name": "A", "nt_resnum": 1010, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1010", "linked_nts": [ "///A/1009", "///A/1011" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": 165.706, "beta": 119.374, "gamma": 135.786, "delta": 84.016, "epsilon": -92.750, "zeta": -125.362, "epsilon_zeta": 32.612, "bb_type": "--", "chi": 172.446, "glyco_bond": "anti", "C5prime_xyz": [ -1.317, 8.191, 2.104 ], "P_xyz": [ 0.207, 9.980, 0.969 ], "form": "A", "ssZp": 4.542, "Dp": 4.617, "splay_angle": 22.205, "splay_distance": 3.697, "splay_ratio": 0.195, "d22": 4.233, "d64": 4.507, "eta": 153.371, "theta": -152.899, "eta_prime": 171.305, "theta_prime": -157.358, "eta_base": -139.445, "theta_base": -136.174, "v0": 4.111, "v1": -24.646, "v2": 34.681, "v3": -33.321, "v4": 18.403, "amplitude": 35.475, "phase_angle": 12.143, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.070, "frame": { "rmsd": 0.010, "origin": [ 181.874, 152.745, 141.886 ], "x_axis": [ -0.300, -0.660, 0.688 ], "y_axis": [ 0.332, 0.604, 0.724 ], "z_axis": [ -0.894, 0.446, 0.038 ], "quaternion": [ 0.579, 0.120, -0.683, -0.428 ] } }, { "index": 987, "index_chain": 987, "chain_name": "A", "nt_resnum": 1011, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1011", "linked_nts": [ "///A/1010", "///A/1012" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 95.060, "beta": -113.996, "gamma": -163.480, "delta": 84.205, "epsilon": -132.059, "zeta": -76.558, "epsilon_zeta": -55.501, "bb_type": "BI", "chi": 166.187, "glyco_bond": "anti", "C5prime_xyz": [ -1.444, 7.978, 2.398 ], "P_xyz": [ 0.216, 9.688, 1.322 ], "form": "A", "ssZp": 4.524, "Dp": 4.682, "splay_angle": 22.774, "splay_distance": 3.562, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 153.755, "theta": -163.350, "eta_prime": 172.385, "theta_prime": -161.019, "eta_base": -148.969, "theta_base": -137.519, "v0": 4.846, "v1": -25.525, "v2": 35.336, "v3": -33.483, "v4": 18.061, "amplitude": 35.999, "phase_angle": 11.017, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.008, "origin": [ 178.333, 152.914, 140.836 ], "x_axis": [ 0.030, -0.392, 0.919 ], "y_axis": [ 0.424, 0.838, 0.344 ], "z_axis": [ -0.905, 0.379, 0.192 ], "quaternion": [ 0.718, -0.012, -0.636, -0.284 ] } }, { "index": 988, "index_chain": 988, "chain_name": "A", "nt_resnum": 1012, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1012", "linked_nts": [ "///A/1011", "///A/1013" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -77.918, "beta": -178.661, "gamma": 54.951, "delta": 83.326, "epsilon": -144.562, "zeta": -66.355, "epsilon_zeta": -78.207, "bb_type": "BI", "chi": -174.242, "glyco_bond": "anti", "C5prime_xyz": [ -1.418, 8.592, 1.372 ], "P_xyz": [ 1.001, 8.846, 2.325 ], "form": "A", "ssZp": 4.498, "Dp": 4.550, "splay_angle": 23.105, "splay_distance": 3.657, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 161.540, "theta": -134.645, "eta_prime": 174.706, "theta_prime": -132.182, "eta_base": -149.510, "theta_base": -91.959, "v0": 0.284, "v1": -21.683, "v2": 33.599, "v3": -34.396, "v4": 21.526, "amplitude": 35.364, "phase_angle": 18.178, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.744, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 174.875, 152.077, 140.670 ], "x_axis": [ 0.426, 0.124, 0.896 ], "y_axis": [ 0.357, 0.887, -0.292 ], "z_axis": [ -0.831, 0.445, 0.334 ], "quaternion": [ 0.813, -0.226, -0.531, -0.072 ] } }, { "index": 989, "index_chain": 989, "chain_name": "A", "nt_resnum": 1013, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1013", "linked_nts": [ "///A/1012", "///A/1014" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.085, "beta": 172.196, "gamma": 51.201, "delta": 81.498, "epsilon": -159.932, "zeta": -74.283, "epsilon_zeta": -85.649, "bb_type": "BI", "chi": -166.859, "glyco_bond": "anti", "C5prime_xyz": [ -1.493, 8.670, 0.925 ], "P_xyz": [ 1.034, 9.120, 1.436 ], "form": "A", "ssZp": 4.459, "Dp": 4.508, "splay_angle": 22.205, "splay_distance": 3.527, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 160.370, "theta": -155.245, "eta_prime": -178.744, "theta_prime": -157.524, "eta_base": -118.288, "theta_base": -148.566, "v0": 0.927, "v1": -23.116, "v2": 35.267, "v3": -35.715, "v4": 21.909, "amplitude": 36.917, "phase_angle": 17.191, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.969, "filter_rmsd": 0.102, "frame": { "rmsd": 0.007, "origin": [ 172.634, 152.935, 143.429 ], "x_axis": [ 0.592, 0.667, 0.452 ], "y_axis": [ -0.017, 0.571, -0.821 ], "z_axis": [ -0.806, 0.479, 0.349 ], "quaternion": [ 0.793, -0.410, -0.397, 0.216 ] } }, { "index": 990, "index_chain": 990, "chain_name": "A", "nt_resnum": 1014, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1014", "linked_nts": [ "///A/1013", "///A/1015" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -71.347, "beta": -178.715, "gamma": 48.287, "delta": 78.599, "epsilon": -158.029, "zeta": -72.806, "epsilon_zeta": -85.223, "bb_type": "BI", "chi": -168.800, "glyco_bond": "anti", "C5prime_xyz": [ -1.374, 8.614, 0.997 ], "P_xyz": [ 1.113, 9.120, 1.624 ], "form": "A", "ssZp": 4.610, "Dp": 4.633, "splay_angle": 23.787, "splay_distance": 3.666, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 162.089, "theta": -156.548, "eta_prime": 168.591, "theta_prime": -152.224, "eta_base": -168.928, "theta_base": -128.701, "v0": 2.543, "v1": -25.661, "v2": 37.705, "v3": -37.234, "v4": 21.926, "amplitude": 39.024, "phase_angle": 14.936, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.853, "filter_rmsd": 0.041, "frame": { "rmsd": 0.012, "origin": [ 170.015, 152.339, 145.715 ], "x_axis": [ 0.647, 0.762, 0.011 ], "y_axis": [ -0.296, 0.264, -0.918 ], "z_axis": [ -0.702, 0.591, 0.397 ], "quaternion": [ 0.760, -0.497, -0.235, 0.348 ] } }, { "index": 991, "index_chain": 991, "chain_name": "A", "nt_resnum": 1015, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1015", "linked_nts": [ "///A/1014", "///A/1016" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.654, "beta": 175.099, "gamma": 60.946, "delta": 84.791, "epsilon": -150.526, "zeta": -80.566, "epsilon_zeta": -69.960, "bb_type": "BI", "chi": -165.114, "glyco_bond": "anti", "C5prime_xyz": [ -1.398, 8.656, 0.879 ], "P_xyz": [ 1.171, 8.923, 1.229 ], "form": "A", "ssZp": 4.416, "Dp": 4.535, "splay_angle": 20.712, "splay_distance": 3.255, "splay_ratio": 0.180, "d22": null, "d64": null, "eta": 176.893, "theta": -148.944, "eta_prime": -171.097, "theta_prime": -148.881, "eta_base": -138.747, "theta_base": -129.044, "v0": 2.166, "v1": -23.003, "v2": 33.885, "v3": -33.609, "v4": 19.850, "amplitude": 35.110, "phase_angle": 15.178, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.840, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 168.588, 153.929, 148.695 ], "x_axis": [ 0.448, 0.765, -0.463 ], "y_axis": [ -0.601, -0.126, -0.789 ], "z_axis": [ -0.662, 0.632, 0.403 ], "quaternion": [ 0.657, -0.541, -0.075, 0.520 ] } }, { "index": 992, "index_chain": 992, "chain_name": "A", "nt_resnum": 1016, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1016", "linked_nts": [ "///A/1015", "///A/1017" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -60.905, "beta": 167.146, "gamma": 55.965, "delta": 86.058, "epsilon": -160.006, "zeta": -63.724, "epsilon_zeta": -96.282, "bb_type": "BI", "chi": -158.477, "glyco_bond": "anti", "C5prime_xyz": [ -1.396, 8.728, 0.451 ], "P_xyz": [ 1.196, 9.026, 0.694 ], "form": "A", "ssZp": 4.166, "Dp": 4.380, "splay_angle": 18.533, "splay_distance": 3.012, "splay_ratio": 0.162, "d22": 4.103, "d64": 3.839, "eta": 169.964, "theta": -139.101, "eta_prime": -175.671, "theta_prime": -142.679, "eta_base": -141.816, "theta_base": -112.337, "v0": 0.461, "v1": -20.706, "v2": 31.815, "v3": -32.446, "v4": 20.219, "amplitude": 33.421, "phase_angle": 17.833, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.861, "filter_rmsd": 0.103, "frame": { "rmsd": 0.010, "origin": [ 167.438, 155.942, 150.979 ], "x_axis": [ 0.111, 0.572, -0.813 ], "y_axis": [ -0.802, -0.432, -0.413 ], "z_axis": [ -0.587, 0.697, 0.411 ], "quaternion": [ 0.522, -0.532, 0.108, 0.658 ] } }, { "index": 993, "index_chain": 993, "chain_name": "A", "nt_resnum": 1017, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1017", "linked_nts": [ "///A/1016", "///A/1018" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,phosphate", "alpha": -78.398, "beta": 173.942, "gamma": 61.776, "delta": 83.578, "epsilon": -145.318, "zeta": -58.542, "epsilon_zeta": -86.776, "bb_type": "BI", "chi": -155.293, "glyco_bond": "anti", "C5prime_xyz": [ -1.473, 8.869, 0.227 ], "P_xyz": [ 1.097, 9.392, 0.318 ], "form": ".", "ssZp": 4.111, "Dp": 4.464, "splay_angle": 36.485, "splay_distance": 5.726, "splay_ratio": 0.314, "d22": null, "d64": null, "eta": 165.689, "theta": -126.274, "eta_prime": -178.206, "theta_prime": -121.748, "eta_base": -130.952, "theta_base": -71.401, "v0": -1.764, "v1": -19.807, "v2": 32.560, "v3": -34.473, "v4": 22.849, "amplitude": 34.972, "phase_angle": 21.403, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.707, "filter_rmsd": 0.064, "frame": { "rmsd": 0.008, "origin": [ 166.679, 158.744, 151.783 ], "x_axis": [ -0.348, 0.181, -0.920 ], "y_axis": [ -0.786, -0.590, 0.182 ], "z_axis": [ -0.510, 0.787, 0.348 ], "quaternion": [ 0.320, -0.473, 0.320, 0.756 ] } }, { "index": 994, "index_chain": 994, "chain_name": "A", "nt_resnum": 1018, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1018", "linked_nts": [ "///A/1017", "///A/1019" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate", "alpha": -71.798, "beta": 173.145, "gamma": 64.967, "delta": 85.829, "epsilon": -149.370, "zeta": 52.430, "epsilon_zeta": 158.200, "bb_type": "--", "chi": -140.464, "glyco_bond": "anti", "C5prime_xyz": [ -1.095, 8.644, -0.598 ], "P_xyz": [ 1.461, 8.633, -1.192 ], "form": ".", "ssZp": 3.698, "Dp": 4.581, "splay_angle": 20.901, "splay_distance": 3.384, "splay_ratio": 0.186, "d22": null, "d64": null, "eta": 170.072, "theta": -15.959, "eta_prime": -162.149, "theta_prime": -61.002, "eta_base": -95.905, "theta_base": -105.533, "v0": 4.424, "v1": -24.515, "v2": 34.146, "v3": -32.542, "v4": 17.787, "amplitude": 34.846, "phase_angle": 11.505, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.684, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 161.695, 160.980, 150.066 ], "x_axis": [ -0.872, -0.400, -0.281 ], "y_axis": [ -0.166, -0.298, 0.940 ], "z_axis": [ -0.460, 0.867, 0.193 ], "quaternion": [ -0.076, -0.241, 0.588, 0.769 ] } }, { "index": 995, "index_chain": 995, "chain_name": "A", "nt_resnum": 1019, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1019", "linked_nts": [ "///A/1018", "///A/1020" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,cap-donor,phosphate", "alpha": 165.262, "beta": 146.554, "gamma": 50.166, "delta": 144.944, "epsilon": -109.324, "zeta": -112.492, "epsilon_zeta": 3.168, "bb_type": "--", "chi": -142.204, "glyco_bond": "anti", "C5prime_xyz": [ -1.632, 8.684, -0.026 ], "P_xyz": [ 0.810, 8.637, 0.888 ], "form": ".", "ssZp": 1.354, "Dp": 1.304, "splay_angle": 69.640, "splay_distance": 11.139, "splay_ratio": 0.572, "d22": null, "d64": null, "eta": 48.006, "theta": -57.631, "eta_prime": 116.543, "theta_prime": -125.254, "eta_base": 116.471, "theta_base": -169.025, "v0": -20.705, "v1": 34.026, "v2": -33.546, "v3": 22.441, "v4": -1.287, "amplitude": 35.026, "phase_angle": 163.285, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.952, "filter_rmsd": 0.041, "frame": { "rmsd": 0.011, "origin": [ 158.815, 162.610, 150.767 ], "x_axis": [ 0.864, 0.499, -0.064 ], "y_axis": [ 0.056, 0.031, 0.998 ], "z_axis": [ 0.500, -0.866, -0.001 ], "quaternion": [ 0.688, 0.677, 0.205, 0.161 ] } }, { "index": 996, "index_chain": 996, "chain_name": "A", "nt_resnum": 1020, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1020", "linked_nts": [ "///A/1019", "///A/1021" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,junction-loop", "alpha": 92.514, "beta": 154.754, "gamma": 165.544, "delta": 149.317, "epsilon": -104.961, "zeta": 143.152, "epsilon_zeta": 111.886, "bb_type": "BII", "chi": -88.502, "glyco_bond": "--", "C5prime_xyz": [ -2.677, 7.663, -2.485 ], "P_xyz": [ -2.240, 7.602, -5.069 ], "form": ".", "ssZp": 0.827, "Dp": 0.967, "splay_angle": 51.893, "splay_distance": 8.273, "splay_ratio": 0.445, "d22": null, "d64": null, "eta": 96.775, "theta": 78.617, "eta_prime": 129.161, "theta_prime": 90.344, "eta_base": 117.850, "theta_base": 141.275, "v0": -22.574, "v1": 37.556, "v2": -37.277, "v3": 25.194, "v4": -1.879, "amplitude": 38.794, "phase_angle": 163.927, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 150.734, 154.985, 151.560 ], "x_axis": [ 0.339, 0.562, -0.754 ], "y_axis": [ 0.872, 0.112, 0.476 ], "z_axis": [ 0.352, -0.819, -0.452 ], "quaternion": [ 0.500, 0.648, 0.553, -0.155 ] } }, { "index": 997, "index_chain": 997, "chain_name": "A", "nt_resnum": 1021, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1021", "linked_nts": [ "///A/1020", "///A/1022" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -115.537, "beta": 145.325, "gamma": 63.984, "delta": 79.307, "epsilon": -132.014, "zeta": -56.039, "epsilon_zeta": -75.975, "bb_type": "BI", "chi": 168.736, "glyco_bond": "anti", "C5prime_xyz": [ -1.270, 7.939, 2.205 ], "P_xyz": [ 1.320, 8.155, 1.878 ], "form": ".", "ssZp": 4.876, "Dp": 4.842, "splay_angle": 43.093, "splay_distance": 6.101, "splay_ratio": 0.372, "d22": null, "d64": null, "eta": 163.407, "theta": -111.860, "eta_prime": 157.876, "theta_prime": -112.737, "eta_base": -156.870, "theta_base": -76.031, "v0": 8.344, "v1": -31.074, "v2": 40.786, "v3": -36.945, "v4": 18.044, "amplitude": 41.098, "phase_angle": 7.072, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4g", "suiteness": 0.042, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 149.735, 147.987, 155.858 ], "x_axis": [ 0.651, -0.045, -0.757 ], "y_axis": [ 0.584, 0.668, 0.462 ], "z_axis": [ 0.485, -0.743, 0.461 ], "quaternion": [ 0.834, 0.361, 0.373, -0.189 ] } }, { "index": 998, "index_chain": 998, "chain_name": "A", "nt_resnum": 1022, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1022", "linked_nts": [ "///A/1021", "///A/1023" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop,A-minor", "alpha": -84.653, "beta": -169.789, "gamma": 68.353, "delta": 83.990, "epsilon": -141.597, "zeta": -71.710, "epsilon_zeta": -69.886, "bb_type": "BI", "chi": 176.676, "glyco_bond": "anti", "C5prime_xyz": [ -1.274, 8.273, 1.876 ], "P_xyz": [ 1.223, 8.189, 2.696 ], "form": "A", "ssZp": 4.640, "Dp": 4.669, "splay_angle": 24.076, "splay_distance": 3.833, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 168.697, "theta": -135.388, "eta_prime": -166.949, "theta_prime": -134.462, "eta_base": -98.931, "theta_base": -117.184, "v0": 5.309, "v1": -25.922, "v2": 35.555, "v3": -33.412, "v4": 17.768, "amplitude": 36.141, "phase_angle": 10.332, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.385, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 154.824, 144.784, 154.826 ], "x_axis": [ 0.707, 0.707, 0.019 ], "y_axis": [ -0.479, 0.459, 0.748 ], "z_axis": [ 0.520, -0.539, 0.663 ], "quaternion": [ 0.841, 0.383, 0.149, 0.352 ] } }, { "index": 999, "index_chain": 999, "chain_name": "A", "nt_resnum": 1023, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1023", "linked_nts": [ "///A/1022", "///A/1024" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor", "alpha": -86.671, "beta": -174.403, "gamma": 63.166, "delta": 80.916, "epsilon": -152.055, "zeta": -64.436, "epsilon_zeta": -87.619, "bb_type": "BI", "chi": -168.052, "glyco_bond": "anti", "C5prime_xyz": [ -1.535, 8.695, 0.974 ], "P_xyz": [ 0.987, 9.228, 1.418 ], "form": "A", "ssZp": 4.551, "Dp": 4.596, "splay_angle": 25.511, "splay_distance": 4.141, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 161.626, "theta": -140.876, "eta_prime": 175.130, "theta_prime": -140.510, "eta_base": -151.229, "theta_base": -112.256, "v0": 0.812, "v1": -23.344, "v2": 35.727, "v3": -36.222, "v4": 22.326, "amplitude": 37.434, "phase_angle": 17.368, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.537, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 157.750, 142.322, 155.089 ], "x_axis": [ 0.266, 0.900, 0.345 ], "y_axis": [ -0.768, -0.019, 0.641 ], "z_axis": [ 0.583, -0.435, 0.686 ], "quaternion": [ 0.695, 0.387, 0.086, 0.600 ] } }, { "index": 1000, "index_chain": 1000, "chain_name": "A", "nt_resnum": 1024, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1024", "linked_nts": [ "///A/1023", "///A/1025" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop", "alpha": -69.580, "beta": -177.845, "gamma": 52.718, "delta": 80.046, "epsilon": -146.987, "zeta": -66.539, "epsilon_zeta": -80.449, "bb_type": "BI", "chi": -173.322, "glyco_bond": "anti", "C5prime_xyz": [ -1.659, 8.728, 1.234 ], "P_xyz": [ 0.673, 9.324, 2.251 ], "form": "A", "ssZp": 4.481, "Dp": 4.516, "splay_angle": 22.163, "splay_distance": 3.706, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 168.740, "theta": -141.575, "eta_prime": -178.050, "theta_prime": -140.629, "eta_base": -134.741, "theta_base": -116.675, "v0": -3.652, "v1": -19.339, "v2": 33.629, "v3": -36.679, "v4": 25.419, "amplitude": 36.855, "phase_angle": 24.152, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.933, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 161.450, 142.156, 156.942 ], "x_axis": [ -0.401, 0.818, 0.411 ], "y_axis": [ -0.822, -0.520, 0.232 ], "z_axis": [ 0.404, -0.245, 0.881 ], "quaternion": [ 0.490, 0.243, -0.004, 0.837 ] } }, { "index": 1001, "index_chain": 1001, "chain_name": "A", "nt_resnum": 1025, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1025", "linked_nts": [ "///A/1024", "///A/1026" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -68.156, "beta": -171.269, "gamma": 36.331, "delta": 78.765, "epsilon": -175.903, "zeta": 58.866, "epsilon_zeta": 125.231, "bb_type": "--", "chi": -161.953, "glyco_bond": "anti", "C5prime_xyz": [ -1.569, 8.757, 0.589 ], "P_xyz": [ 0.674, 9.657, 1.565 ], "form": ".", "ssZp": 4.389, "Dp": 4.424, "splay_angle": 120.114, "splay_distance": 14.644, "splay_ratio": 0.867, "d22": null, "d64": null, "eta": 157.329, "theta": -12.869, "eta_prime": 170.247, "theta_prime": -80.830, "eta_base": -151.398, "theta_base": -154.019, "v0": -0.976, "v1": -22.218, "v2": 35.483, "v3": -37.102, "v4": 24.063, "amplitude": 37.779, "phase_angle": 20.082, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.490, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 164.015, 143.006, 159.478 ], "x_axis": [ -0.872, 0.445, 0.205 ], "y_axis": [ -0.459, -0.888, -0.024 ], "z_axis": [ 0.171, -0.115, 0.979 ], "quaternion": [ 0.234, 0.097, -0.036, 0.967 ] } }, { "index": 1002, "index_chain": 1002, "chain_name": "A", "nt_resnum": 1026, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1026", "linked_nts": [ "///A/1025", "///A/1027" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,ribose-zipper,phosphate,splayed-apart", "alpha": 90.092, "beta": 117.945, "gamma": 30.324, "delta": 86.560, "epsilon": -92.221, "zeta": -144.694, "epsilon_zeta": 52.472, "bb_type": "--", "chi": -111.471, "glyco_bond": "anti", "C5prime_xyz": [ -1.880, 8.116, -2.153 ], "P_xyz": [ 0.671, 7.688, -2.636 ], "form": ".", "ssZp": 0.826, "Dp": 4.414, "splay_angle": 21.269, "splay_distance": 3.944, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": -58.312, "theta": -119.518, "eta_prime": 18.514, "theta_prime": -127.689, "eta_base": 64.175, "theta_base": -111.123, "v0": -0.761, "v1": -18.798, "v2": 30.038, "v3": -31.261, "v4": 20.246, "amplitude": 31.946, "phase_angle": 19.902, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "5d", "suiteness": 0.215, "filter_rmsd": 0.039, "frame": { "rmsd": 0.014, "origin": [ 169.771, 133.581, 169.094 ], "x_axis": [ 0.716, 0.287, -0.637 ], "y_axis": [ -0.688, 0.449, -0.571 ], "z_axis": [ 0.122, 0.846, 0.519 ], "quaternion": [ 0.819, -0.433, 0.232, 0.298 ] } }, { "index": 1003, "index_chain": 1003, "chain_name": "A", "nt_resnum": 1027, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1027", "linked_nts": [ "///A/1026", "///A/1028" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,A-minor,ribose-zipper", "alpha": 86.797, "beta": -95.437, "gamma": -173.219, "delta": 82.826, "epsilon": -95.562, "zeta": -39.881, "epsilon_zeta": -55.681, "bb_type": "--", "chi": -115.098, "glyco_bond": "anti", "C5prime_xyz": [ -1.849, 8.258, -1.986 ], "P_xyz": [ -2.129, 7.142, -4.327 ], "form": ".", "ssZp": 1.137, "Dp": 4.591, "splay_angle": 54.555, "splay_distance": 8.408, "splay_ratio": 0.499, "d22": null, "d64": null, "eta": 168.723, "theta": -94.895, "eta_prime": -179.212, "theta_prime": -88.771, "eta_base": -157.022, "theta_base": -27.759, "v0": -0.128, "v1": -21.702, "v2": 34.007, "v3": -34.990, "v4": 22.168, "amplitude": 35.919, "phase_angle": 18.778, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 169.309, 137.411, 168.276 ], "x_axis": [ 0.602, 0.284, -0.746 ], "y_axis": [ -0.700, 0.637, -0.323 ], "z_axis": [ 0.384, 0.717, 0.582 ], "quaternion": [ 0.840, -0.310, 0.336, 0.293 ] } }, { "index": 1004, "index_chain": 1004, "chain_name": "A", "nt_resnum": 1028, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1028", "linked_nts": [ "///A/1027", "///A/1029" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -76.869, "beta": -167.279, "gamma": 54.965, "delta": 142.512, "epsilon": -98.194, "zeta": -76.430, "epsilon_zeta": -21.765, "bb_type": "--", "chi": 74.052, "glyco_bond": "syn", "C5prime_xyz": [ -5.164, 4.691, 1.905 ], "P_xyz": [ -5.915, 2.197, 1.714 ], "form": ".", "ssZp": -0.793, "Dp": 0.925, "splay_angle": 139.218, "splay_distance": 18.884, "splay_ratio": 0.937, "d22": null, "d64": null, "eta": 167.242, "theta": -63.865, "eta_prime": -144.316, "theta_prime": -120.699, "eta_base": -87.535, "theta_base": -153.692, "v0": -23.034, "v1": 34.977, "v2": -32.897, "v3": 20.557, "v4": 1.375, "amplitude": 35.233, "phase_angle": 159.018, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.013, "filter_rmsd": 0.067, "frame": { "rmsd": 0.007, "origin": [ 162.868, 138.975, 163.103 ], "x_axis": [ 0.564, -0.729, -0.388 ], "y_axis": [ 0.772, 0.633, -0.066 ], "z_axis": [ 0.293, -0.262, 0.919 ], "quaternion": [ 0.883, 0.056, 0.193, -0.425 ] } }, { "index": 1005, "index_chain": 1005, "chain_name": "A", "nt_resnum": 1029, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1029", "linked_nts": [ "///A/1028", "///A/1030" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,A-minor,splayed-apart", "alpha": -64.311, "beta": -140.300, "gamma": -176.459, "delta": 84.029, "epsilon": -133.989, "zeta": -4.987, "epsilon_zeta": -129.002, "bb_type": "--", "chi": -159.412, "glyco_bond": "anti", "C5prime_xyz": [ -1.441, 8.724, 0.496 ], "P_xyz": [ -0.099, 9.905, -1.411 ], "form": ".", "ssZp": 4.247, "Dp": 4.577, "splay_angle": 36.116, "splay_distance": 5.479, "splay_ratio": 0.320, "d22": null, "d64": null, "eta": -37.239, "theta": -104.427, "eta_prime": 15.747, "theta_prime": -127.653, "eta_base": 32.570, "theta_base": -59.273, "v0": -0.490, "v1": -20.466, "v2": 32.405, "v3": -33.641, "v4": 21.555, "amplitude": 34.367, "phase_angle": 19.449, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "2h", "suiteness": 0.309, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 168.672, 156.390, 158.673 ], "x_axis": [ 0.946, -0.294, 0.135 ], "y_axis": [ -0.323, -0.841, 0.434 ], "z_axis": [ -0.014, -0.454, -0.891 ], "quaternion": [ 0.232, 0.959, -0.161, 0.031 ] } }, { "index": 1006, "index_chain": 1006, "chain_name": "A", "nt_resnum": 1030, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1030", "linked_nts": [ "///A/1029", "///A/1031" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,phosphate,splayed-apart", "alpha": -167.699, "beta": 86.014, "gamma": 170.448, "delta": 145.871, "epsilon": -122.612, "zeta": 6.253, "epsilon_zeta": 231.134, "bb_type": "--", "chi": 57.664, "glyco_bond": "syn", "C5prime_xyz": [ -5.276, 3.740, 0.983 ], "P_xyz": [ -5.940, 3.736, 3.509 ], "form": ".", "ssZp": -1.595, "Dp": 1.547, "splay_angle": 87.783, "splay_distance": 13.233, "splay_ratio": 0.694, "d22": null, "d64": null, "eta": -174.758, "theta": -81.314, "eta_prime": -167.698, "theta_prime": -59.369, "eta_base": -88.596, "theta_base": -37.990, "v0": -19.747, "v1": 33.570, "v2": -33.776, "v3": 23.272, "v4": -2.389, "amplitude": 34.951, "phase_angle": 165.102, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 170.535, 151.315, 159.564 ], "x_axis": [ 0.496, 0.854, 0.155 ], "y_axis": [ -0.463, 0.411, -0.785 ], "z_axis": [ -0.734, 0.318, 0.600 ], "quaternion": [ 0.792, -0.348, -0.281, 0.416 ] } }, { "index": 1007, "index_chain": 1007, "chain_name": "A", "nt_resnum": 1031, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1031", "linked_nts": [ "///A/1030", "///A/1032" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,phosphate,splayed-apart", "alpha": -106.456, "beta": -149.575, "gamma": 46.099, "delta": 81.652, "epsilon": -144.550, "zeta": -74.334, "epsilon_zeta": -70.217, "bb_type": "BI", "chi": 175.705, "glyco_bond": "anti", "C5prime_xyz": [ -1.391, 8.406, 1.895 ], "P_xyz": [ 0.377, 8.340, 3.831 ], "form": "A", "ssZp": 4.527, "Dp": 4.590, "splay_angle": 23.867, "splay_distance": 3.708, "splay_ratio": 0.209, "d22": 4.904, "d64": 4.644, "eta": 144.752, "theta": -147.419, "eta_prime": -176.753, "theta_prime": -139.903, "eta_base": -145.794, "theta_base": -113.058, "v0": 0.897, "v1": -22.508, "v2": 34.277, "v3": -34.684, "v4": 21.338, "amplitude": 35.878, "phase_angle": 17.180, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.068, "frame": { "rmsd": 0.009, "origin": [ 161.264, 142.224, 157.012 ], "x_axis": [ -0.225, 0.728, 0.647 ], "y_axis": [ 0.757, 0.549, -0.354 ], "z_axis": [ -0.613, 0.410, -0.675 ], "quaternion": [ -0.403, 0.474, 0.783, 0.018 ] } }, { "index": 1008, "index_chain": 1008, "chain_name": "A", "nt_resnum": 1032, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1032", "linked_nts": [ "///A/1031", "///A/1033" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet,A-minor,ribose-zipper", "alpha": -83.301, "beta": -174.322, "gamma": 58.536, "delta": 83.219, "epsilon": -153.139, "zeta": -60.312, "epsilon_zeta": -92.827, "bb_type": "BI", "chi": -168.630, "glyco_bond": "anti", "C5prime_xyz": [ -1.231, 8.644, 1.045 ], "P_xyz": [ 1.294, 8.886, 1.708 ], "form": "A", "ssZp": 4.509, "Dp": 4.569, "splay_angle": 23.007, "splay_distance": 3.800, "splay_ratio": 0.206, "d22": 4.301, "d64": 4.603, "eta": 162.754, "theta": -135.536, "eta_prime": 174.698, "theta_prime": -134.962, "eta_base": -150.803, "theta_base": -110.648, "v0": 2.987, "v1": -24.314, "v2": 35.148, "v3": -34.372, "v4": 19.819, "amplitude": 36.218, "phase_angle": 13.960, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.677, "filter_rmsd": 0.062, "frame": { "rmsd": 0.009, "origin": [ 157.868, 142.268, 155.522 ], "x_axis": [ 0.314, 0.859, 0.405 ], "y_axis": [ 0.759, 0.029, -0.651 ], "z_axis": [ -0.570, 0.512, -0.642 ], "quaternion": [ -0.419, 0.694, 0.582, -0.060 ] } }, { "index": 1009, "index_chain": 1009, "chain_name": "A", "nt_resnum": 1033, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1033", "linked_nts": [ "///A/1032", "///A/1034" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop,A-minor,ribose-zipper", "alpha": -79.831, "beta": 179.993, "gamma": 64.213, "delta": 80.171, "epsilon": -147.070, "zeta": -55.901, "epsilon_zeta": -91.168, "bb_type": "BI", "chi": -162.721, "glyco_bond": "anti", "C5prime_xyz": [ -1.703, 8.868, 0.620 ], "P_xyz": [ 0.781, 9.643, 0.878 ], "form": ".", "ssZp": 4.376, "Dp": 4.516, "splay_angle": 31.004, "splay_distance": 4.846, "splay_ratio": 0.267, "d22": null, "d64": null, "eta": 167.883, "theta": -129.028, "eta_prime": -175.253, "theta_prime": -127.960, "eta_base": -134.723, "theta_base": -73.900, "v0": -4.141, "v1": -19.147, "v2": 33.763, "v3": -37.109, "v4": 25.982, "amplitude": 37.203, "phase_angle": 24.832, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.656, "filter_rmsd": 0.058, "frame": { "rmsd": 0.008, "origin": [ 155.096, 144.833, 155.101 ], "x_axis": [ 0.712, 0.702, 0.026 ], "y_axis": [ 0.436, -0.413, -0.800 ], "z_axis": [ -0.550, 0.581, -0.600 ], "quaternion": [ -0.418, 0.825, 0.345, -0.159 ] } }, { "index": 1010, "index_chain": 1010, "chain_name": "A", "nt_resnum": 1034, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1034", "linked_nts": [ "///A/1033", "///A/1035" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate", "alpha": -94.103, "beta": 173.595, "gamma": 71.623, "delta": 83.740, "epsilon": -176.358, "zeta": -80.425, "epsilon_zeta": -95.933, "bb_type": "BI", "chi": -171.031, "glyco_bond": "anti", "C5prime_xyz": [ -1.390, 8.520, 1.173 ], "P_xyz": [ 1.197, 8.883, 1.214 ], "form": ".", "ssZp": 4.365, "Dp": 4.384, "splay_angle": 25.372, "splay_distance": 3.931, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 151.158, "theta": -148.425, "eta_prime": -179.129, "theta_prime": -150.269, "eta_base": -99.911, "theta_base": -143.498, "v0": 2.660, "v1": -23.843, "v2": 34.700, "v3": -34.149, "v4": 19.893, "amplitude": 35.835, "phase_angle": 14.459, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.195, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 156.346, 148.552, 152.256 ], "x_axis": [ 0.867, -0.142, -0.477 ], "y_axis": [ -0.390, -0.790, -0.474 ], "z_axis": [ -0.310, 0.597, -0.740 ], "quaternion": [ -0.290, 0.922, -0.144, -0.213 ] } }, { "index": 1011, "index_chain": 1011, "chain_name": "A", "nt_resnum": 1035, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1035", "linked_nts": [ "///A/1034", "///A/1036" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,junction-loop,phosphate", "alpha": -169.886, "beta": -166.533, "gamma": -171.246, "delta": 143.722, "epsilon": -140.821, "zeta": -175.818, "epsilon_zeta": 34.997, "bb_type": "--", "chi": -90.135, "glyco_bond": "anti", "C5prime_xyz": [ -2.108, 7.790, -2.520 ], "P_xyz": [ -1.371, 7.540, -5.023 ], "form": ".", "ssZp": 1.415, "Dp": 1.986, "splay_angle": 57.427, "splay_distance": 9.345, "splay_ratio": 0.485, "d22": null, "d64": null, "eta": -123.646, "theta": 112.952, "eta_prime": -122.078, "theta_prime": 123.947, "eta_base": -124.763, "theta_base": 148.940, "v0": -19.156, "v1": 32.213, "v2": -32.270, "v3": 22.001, "v4": -1.966, "amplitude": 33.476, "phase_angle": 164.576, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.665, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 155.657, 152.357, 151.552 ], "x_axis": [ 0.361, 0.384, -0.850 ], "y_axis": [ -0.913, -0.043, -0.407 ], "z_axis": [ -0.193, 0.922, 0.335 ], "quaternion": [ 0.643, -0.517, 0.256, 0.504 ] } }, { "index": 1012, "index_chain": 1012, "chain_name": "A", "nt_resnum": 1036, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1036", "linked_nts": [ "///A/1035", "///A/1037" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate,splayed-apart", "alpha": -103.625, "beta": 177.090, "gamma": 41.183, "delta": 85.452, "epsilon": -105.173, "zeta": -115.100, "epsilon_zeta": 9.927, "bb_type": "--", "chi": 177.359, "glyco_bond": "anti", "C5prime_xyz": [ -1.539, 8.285, 1.830 ], "P_xyz": [ 0.675, 8.261, 3.221 ], "form": ".", "ssZp": 4.555, "Dp": 4.605, "splay_angle": 154.334, "splay_distance": 18.115, "splay_ratio": 0.975, "d22": null, "d64": null, "eta": 172.584, "theta": -166.285, "eta_prime": 149.381, "theta_prime": 175.500, "eta_base": 163.160, "theta_base": 156.556, "v0": 1.020, "v1": -21.540, "v2": 32.694, "v3": -33.037, "v4": 20.209, "amplitude": 34.181, "phase_angle": 16.959, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.020, "filter_rmsd": 0.042, "frame": { "rmsd": 0.012, "origin": [ 150.304, 154.504, 158.906 ], "x_axis": [ 0.768, -0.062, -0.638 ], "y_axis": [ -0.515, -0.652, -0.556 ], "z_axis": [ -0.382, 0.756, -0.532 ], "quaternion": [ -0.382, 0.859, -0.168, -0.297 ] } }, { "index": 1013, "index_chain": 1013, "chain_name": "A", "nt_resnum": 1037, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1037", "linked_nts": [ "///A/1036", "///A/1038" ], "nt_type": "RNA", "dbn": "(", "summary": "turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -159.215, "beta": 133.751, "gamma": -33.577, "delta": 85.431, "epsilon": -150.670, "zeta": -62.576, "epsilon_zeta": -88.093, "bb_type": "BI", "chi": -163.025, "glyco_bond": "anti", "C5prime_xyz": [ -1.018, 8.608, 0.737 ], "P_xyz": [ 0.695, 9.108, 2.646 ], "form": "A", "ssZp": 4.482, "Dp": 4.615, "splay_angle": 23.135, "splay_distance": 3.781, "splay_ratio": 0.204, "d22": 4.204, "d64": 4.419, "eta": -8.452, "theta": -146.417, "eta_prime": -3.441, "theta_prime": -138.666, "eta_base": -2.795, "theta_base": -108.234, "v0": 5.447, "v1": -25.671, "v2": 35.011, "v3": -32.788, "v4": 17.313, "amplitude": 35.550, "phase_angle": 9.991, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.008, "origin": [ 132.642, 153.394, 155.040 ], "x_axis": [ 0.091, -0.627, -0.773 ], "y_axis": [ 0.949, 0.289, -0.123 ], "z_axis": [ 0.301, -0.723, 0.622 ], "quaternion": [ 0.708, 0.212, 0.380, -0.557 ] } }, { "index": 1014, "index_chain": 1014, "chain_name": "A", "nt_resnum": 1038, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1038", "linked_nts": [ "///A/1037", "///A/1039" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -77.518, "beta": 178.719, "gamma": 58.180, "delta": 78.496, "epsilon": -171.085, "zeta": -80.361, "epsilon_zeta": -90.724, "bb_type": "BI", "chi": -163.554, "glyco_bond": "anti", "C5prime_xyz": [ -1.575, 8.816, 0.679 ], "P_xyz": [ 0.931, 9.534, 0.906 ], "form": "A", "ssZp": 4.432, "Dp": 4.457, "splay_angle": 22.160, "splay_distance": 3.716, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 159.902, "theta": -144.920, "eta_prime": 178.859, "theta_prime": -150.318, "eta_base": -139.641, "theta_base": -134.984, "v0": -0.978, "v1": -22.842, "v2": 36.630, "v3": -38.137, "v4": 24.633, "amplitude": 38.966, "phase_angle": 19.943, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.800, "filter_rmsd": 0.059, "frame": { "rmsd": 0.009, "origin": [ 132.233, 149.912, 156.453 ], "x_axis": [ 0.515, -0.257, -0.817 ], "y_axis": [ 0.780, 0.535, 0.324 ], "z_axis": [ 0.354, -0.805, 0.476 ], "quaternion": [ 0.795, 0.355, 0.368, -0.326 ] } }, { "index": 1015, "index_chain": 1015, "chain_name": "A", "nt_resnum": 1039, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1039", "linked_nts": [ "///A/1038", "///A/1040" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -178.032, "beta": -158.841, "gamma": 152.460, "delta": 83.376, "epsilon": -132.756, "zeta": -70.097, "epsilon_zeta": -62.659, "bb_type": "BI", "chi": -175.605, "glyco_bond": "anti", "C5prime_xyz": [ -1.447, 8.584, 1.457 ], "P_xyz": [ 0.774, 9.728, 0.690 ], "form": "A", "ssZp": 4.463, "Dp": 4.551, "splay_angle": 24.561, "splay_distance": 4.093, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 168.029, "theta": -142.305, "eta_prime": 178.598, "theta_prime": -142.937, "eta_base": -153.029, "theta_base": -116.161, "v0": -0.333, "v1": -20.612, "v2": 32.515, "v3": -33.651, "v4": 21.421, "amplitude": 34.424, "phase_angle": 19.172, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.045, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 131.640, 146.257, 156.776 ], "x_axis": [ 0.746, 0.171, -0.644 ], "y_axis": [ 0.494, 0.506, 0.707 ], "z_axis": [ 0.447, -0.845, 0.293 ], "quaternion": [ 0.798, 0.486, 0.342, -0.101 ] } }, { "index": 1016, "index_chain": 1016, "chain_name": "A", "nt_resnum": 1040, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1040", "linked_nts": [ "///A/1039", "///A/1041" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart", "alpha": -59.558, "beta": -179.475, "gamma": 39.344, "delta": 79.400, "epsilon": -91.569, "zeta": -139.169, "epsilon_zeta": 47.600, "bb_type": "--", "chi": -150.651, "glyco_bond": "anti", "C5prime_xyz": [ -1.640, 8.874, -0.074 ], "P_xyz": [ 0.766, 9.811, 0.287 ], "form": ".", "ssZp": 3.408, "Dp": 4.589, "splay_angle": 136.353, "splay_distance": 18.240, "splay_ratio": 0.928, "d22": 11.173, "d64": 14.599, "eta": 175.605, "theta": -146.463, "eta_prime": -171.951, "theta_prime": -176.304, "eta_base": -136.380, "theta_base": -176.914, "v0": -2.365, "v1": -21.103, "v2": 35.164, "v3": -37.533, "v4": 25.161, "amplitude": 37.954, "phase_angle": 22.104, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.594, "filter_rmsd": 0.059, "frame": { "rmsd": 0.007, "origin": [ 133.503, 142.722, 155.893 ], "x_axis": [ 0.847, 0.517, -0.125 ], "y_axis": [ -0.008, 0.248, 0.969 ], "z_axis": [ 0.532, -0.819, 0.215 ], "quaternion": [ 0.760, 0.588, 0.216, 0.173 ] } }, { "index": 1017, "index_chain": 1017, "chain_name": "A", "nt_resnum": 1041, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1041", "linked_nts": [ "///A/1040", "///A/1042" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,bulge,phosphate,splayed-apart", "alpha": 69.624, "beta": -136.659, "gamma": 55.048, "delta": 146.436, "epsilon": -131.725, "zeta": 110.420, "epsilon_zeta": 117.855, "bb_type": "--", "chi": -121.034, "glyco_bond": "anti", "C5prime_xyz": [ -1.812, 8.575, -1.189 ], "P_xyz": [ 0.011, 9.731, 0.279 ], "form": ".", "ssZp": 1.485, "Dp": 1.538, "splay_angle": 151.035, "splay_distance": 19.319, "splay_ratio": 0.968, "d22": null, "d64": null, "eta": -15.652, "theta": 128.464, "eta_prime": 9.680, "theta_prime": 92.553, "eta_base": -11.200, "theta_base": 61.308, "v0": -21.906, "v1": 35.819, "v2": -35.357, "v3": 23.647, "v4": -1.317, "amplitude": 36.924, "phase_angle": 163.245, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "7p", "suiteness": 0.382, "filter_rmsd": 0.061, "frame": { "rmsd": 0.008, "origin": [ 132.056, 133.207, 171.387 ], "x_axis": [ 0.080, 0.585, 0.807 ], "y_axis": [ 0.154, 0.793, -0.590 ], "z_axis": [ -0.985, 0.172, -0.026 ], "quaternion": [ 0.679, -0.280, -0.659, 0.159 ] } }, { "index": 1018, "index_chain": 1018, "chain_name": "A", "nt_resnum": 1042, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1042", "linked_nts": [ "///A/1041", "///A/1043" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart", "alpha": 81.641, "beta": 117.286, "gamma": 129.328, "delta": 83.066, "epsilon": -157.998, "zeta": -71.016, "epsilon_zeta": -86.982, "bb_type": "BI", "chi": -168.220, "glyco_bond": "anti", "C5prime_xyz": [ -1.435, 8.607, 0.997 ], "P_xyz": [ -0.442, 9.908, -1.050 ], "form": "A", "ssZp": 4.509, "Dp": 4.534, "splay_angle": 26.430, "splay_distance": 4.140, "splay_ratio": 0.231, "d22": null, "d64": null, "eta": 35.724, "theta": -178.523, "eta_prime": 42.468, "theta_prime": -177.029, "eta_base": 76.521, "theta_base": -154.198, "v0": 1.310, "v1": -22.717, "v2": 34.162, "v3": -34.403, "v4": 20.898, "amplitude": 35.641, "phase_angle": 16.565, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 135.503, 140.282, 153.744 ], "x_axis": [ 0.516, 0.681, 0.520 ], "y_axis": [ -0.310, -0.418, 0.854 ], "z_axis": [ 0.799, -0.602, -0.005 ], "quaternion": [ 0.523, 0.696, 0.133, 0.474 ] } }, { "index": 1019, "index_chain": 1019, "chain_name": "A", "nt_resnum": 1043, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1043", "linked_nts": [ "///A/1042", "///A/1044" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -81.397, "beta": 176.783, "gamma": 69.663, "delta": 82.259, "epsilon": -157.994, "zeta": -66.595, "epsilon_zeta": -91.399, "bb_type": "BI", "chi": -170.590, "glyco_bond": "anti", "C5prime_xyz": [ -1.502, 8.650, 1.130 ], "P_xyz": [ 1.071, 9.097, 1.330 ], "form": "A", "ssZp": 4.511, "Dp": 4.541, "splay_angle": 24.913, "splay_distance": 3.911, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 169.413, "theta": -145.115, "eta_prime": -176.771, "theta_prime": -146.163, "eta_base": -141.479, "theta_base": -121.347, "v0": 1.121, "v1": -23.235, "v2": 35.192, "v3": -35.483, "v4": 21.697, "amplitude": 36.772, "phase_angle": 16.860, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.474, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 139.072, 138.941, 152.131 ], "x_axis": [ 0.267, 0.409, 0.873 ], "y_axis": [ -0.562, -0.669, 0.485 ], "z_axis": [ 0.783, -0.620, 0.052 ], "quaternion": [ 0.403, 0.686, -0.056, 0.603 ] } }, { "index": 1020, "index_chain": 1020, "chain_name": "A", "nt_resnum": 1044, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1044", "linked_nts": [ "///A/1043", "///A/1045" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -73.305, "beta": -171.152, "gamma": 53.810, "delta": 81.756, "epsilon": -165.909, "zeta": -75.751, "epsilon_zeta": -90.157, "bb_type": "BI", "chi": -159.250, "glyco_bond": "anti", "C5prime_xyz": [ -1.095, 8.751, 0.490 ], "P_xyz": [ 1.444, 9.094, 1.040 ], "form": "A", "ssZp": 4.362, "Dp": 4.487, "splay_angle": 22.466, "splay_distance": 3.874, "splay_ratio": 0.204, "d22": 4.112, "d64": 4.775, "eta": 170.959, "theta": -130.162, "eta_prime": -176.924, "theta_prime": -138.186, "eta_base": -137.767, "theta_base": -122.388, "v0": 1.899, "v1": -23.335, "v2": 34.685, "v3": -34.545, "v4": 20.642, "amplitude": 36.024, "phase_angle": 15.674, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.831, "filter_rmsd": 0.064, "frame": { "rmsd": 0.008, "origin": [ 142.914, 138.214, 152.022 ], "x_axis": [ -0.161, -0.039, 0.986 ], "y_axis": [ -0.602, -0.788, -0.129 ], "z_axis": [ 0.782, -0.615, 0.103 ], "quaternion": [ 0.197, 0.617, -0.260, 0.716 ] } }, { "index": 1021, "index_chain": 1021, "chain_name": "A", "nt_resnum": 1045, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1045", "linked_nts": [ "///A/1044", "///A/1046" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": 152.092, "beta": -156.103, "gamma": 176.634, "delta": 83.000, "epsilon": -159.625, "zeta": -70.262, "epsilon_zeta": -89.363, "bb_type": "BI", "chi": 176.328, "glyco_bond": "anti", "C5prime_xyz": [ -1.453, 8.296, 1.882 ], "P_xyz": [ 0.322, 10.031, 1.043 ], "form": ".", "ssZp": 4.450, "Dp": 4.521, "splay_angle": 32.946, "splay_distance": 5.099, "splay_ratio": 0.289, "d22": null, "d64": null, "eta": 165.537, "theta": -174.826, "eta_prime": -176.662, "theta_prime": -170.634, "eta_base": -138.325, "theta_base": -156.144, "v0": 2.485, "v1": -23.711, "v2": 34.682, "v3": -34.182, "v4": 20.016, "amplitude": 35.856, "phase_angle": 14.699, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.928, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 146.526, 137.863, 153.378 ], "x_axis": [ -0.469, -0.305, 0.829 ], "y_axis": [ -0.468, -0.711, -0.525 ], "z_axis": [ 0.750, -0.634, 0.191 ], "quaternion": [ 0.053, 0.513, -0.376, 0.770 ] } }, { "index": 1022, "index_chain": 1022, "chain_name": "A", "nt_resnum": 1046, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1046", "linked_nts": [ "///A/1045", "///A/1047" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,A-minor,ribose-zipper,phosphate", "alpha": -77.562, "beta": -162.013, "gamma": 58.717, "delta": 84.535, "epsilon": -132.521, "zeta": -84.507, "epsilon_zeta": -48.014, "bb_type": "BI", "chi": -178.743, "glyco_bond": "anti", "C5prime_xyz": [ -1.777, 8.538, 1.547 ], "P_xyz": [ 0.329, 8.803, 3.076 ], "form": ".", "ssZp": 4.345, "Dp": 4.447, "splay_angle": 20.534, "splay_distance": 3.187, "splay_ratio": 0.180, "d22": null, "d64": null, "eta": -175.468, "theta": -142.421, "eta_prime": -171.447, "theta_prime": -137.838, "eta_base": -156.963, "theta_base": -93.093, "v0": -3.636, "v1": -17.526, "v2": 30.611, "v3": -33.594, "v4": 23.519, "amplitude": 33.679, "phase_angle": 24.645, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.639, "filter_rmsd": 0.044, "frame": { "rmsd": 0.012, "origin": [ 151.476, 138.275, 154.533 ], "x_axis": [ -0.754, -0.368, 0.544 ], "y_axis": [ -0.416, -0.373, -0.829 ], "z_axis": [ 0.509, -0.851, 0.128 ], "quaternion": [ 0.016, 0.350, -0.560, 0.751 ] } }, { "index": 1023, "index_chain": 1023, "chain_name": "A", "nt_resnum": 1047, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1047", "linked_nts": [ "///A/1046", "///A/1048" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,ribose-zipper", "alpha": -74.976, "beta": 165.167, "gamma": 56.918, "delta": 86.666, "epsilon": -126.686, "zeta": -64.398, "epsilon_zeta": -62.288, "bb_type": "--", "chi": -160.699, "glyco_bond": "anti", "C5prime_xyz": [ -1.009, 8.562, 0.638 ], "P_xyz": [ 1.608, 8.506, 0.679 ], "form": ".", "ssZp": 4.313, "Dp": 4.682, "splay_angle": 41.341, "splay_distance": 6.426, "splay_ratio": 0.353, "d22": null, "d64": null, "eta": 162.357, "theta": -113.142, "eta_prime": 175.759, "theta_prime": -107.635, "eta_base": -129.778, "theta_base": -69.355, "v0": 5.310, "v1": -24.906, "v2": 33.902, "v3": -31.815, "v4": 16.764, "amplitude": 34.423, "phase_angle": 9.981, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.698, "filter_rmsd": 0.042, "frame": { "rmsd": 0.013, "origin": [ 152.773, 135.550, 155.557 ], "x_axis": [ -0.835, -0.506, -0.217 ], "y_axis": [ 0.284, -0.057, -0.957 ], "z_axis": [ 0.472, -0.861, 0.191 ], "quaternion": [ -0.274, 0.088, -0.630, 0.721 ] } }, { "index": 1024, "index_chain": 1024, "chain_name": "A", "nt_resnum": 1048, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1048", "linked_nts": [ "///A/1047", "///A/1049" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor", "alpha": -57.514, "beta": 155.964, "gamma": 65.388, "delta": 82.060, "epsilon": -159.752, "zeta": -74.133, "epsilon_zeta": -85.619, "bb_type": "BI", "chi": -164.197, "glyco_bond": "anti", "C5prime_xyz": [ -1.200, 8.684, 0.799 ], "P_xyz": [ 1.379, 8.846, 0.399 ], "form": ".", "ssZp": 4.469, "Dp": 4.553, "splay_angle": 23.117, "splay_distance": 4.113, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 164.432, "theta": -116.722, "eta_prime": -159.369, "theta_prime": -129.103, "eta_base": -92.817, "theta_base": -111.619, "v0": 3.362, "v1": -25.153, "v2": 36.178, "v3": -35.206, "v4": 20.109, "amplitude": 37.211, "phase_angle": 13.533, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.531, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 151.737, 129.607, 153.343 ], "x_axis": [ -0.192, -0.238, -0.952 ], "y_axis": [ 0.856, 0.433, -0.281 ], "z_axis": [ 0.479, -0.869, 0.121 ], "quaternion": [ 0.583, 0.252, 0.613, -0.469 ] } }, { "index": 1025, "index_chain": 1025, "chain_name": "A", "nt_resnum": 1049, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1049", "linked_nts": [ "///A/1048", "///A/1050" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": 151.518, "beta": -149.982, "gamma": -178.953, "delta": 82.544, "epsilon": -134.030, "zeta": -88.084, "epsilon_zeta": -45.946, "bb_type": "BI", "chi": 178.004, "glyco_bond": "anti", "C5prime_xyz": [ -1.774, 8.479, 1.734 ], "P_xyz": [ -0.133, 10.284, 0.768 ], "form": "A", "ssZp": 4.543, "Dp": 4.585, "splay_angle": 25.504, "splay_distance": 3.950, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": 172.145, "theta": -174.021, "eta_prime": -168.687, "theta_prime": -167.522, "eta_base": -124.778, "theta_base": -139.252, "v0": -1.129, "v1": -20.768, "v2": 33.416, "v3": -34.999, "v4": 22.836, "amplitude": 35.646, "phase_angle": 20.374, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.870, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 151.096, 125.653, 152.408 ], "x_axis": [ 0.241, 0.022, -0.970 ], "y_axis": [ 0.871, 0.436, 0.226 ], "z_axis": [ 0.428, -0.900, 0.086 ], "quaternion": [ 0.664, 0.424, 0.527, -0.320 ] } }, { "index": 1026, "index_chain": 1026, "chain_name": "A", "nt_resnum": 1050, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1050", "linked_nts": [ "///A/1049", "///A/1051" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor,splayed-apart", "alpha": -71.574, "beta": 167.464, "gamma": 63.941, "delta": 86.123, "epsilon": -125.273, "zeta": 176.281, "epsilon_zeta": 58.446, "bb_type": "BII", "chi": -164.271, "glyco_bond": "anti", "C5prime_xyz": [ -1.347, 8.662, 0.801 ], "P_xyz": [ 1.258, 8.926, 0.907 ], "form": ".", "ssZp": 4.311, "Dp": 4.586, "splay_angle": 162.441, "splay_distance": 18.277, "splay_ratio": 0.988, "d22": 10.736, "d64": 12.698, "eta": 175.157, "theta": 139.943, "eta_prime": -175.414, "theta_prime": 118.817, "eta_base": -143.408, "theta_base": -0.662, "v0": 1.165, "v1": -21.264, "v2": 32.071, "v3": -32.299, "v4": 19.680, "amplitude": 33.477, "phase_angle": 16.666, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.618, "filter_rmsd": 0.100, "frame": { "rmsd": 0.009, "origin": [ 151.119, 121.704, 152.354 ], "x_axis": [ 0.688, 0.283, -0.668 ], "y_axis": [ 0.582, 0.335, 0.741 ], "z_axis": [ 0.433, -0.899, 0.066 ], "quaternion": [ 0.723, 0.567, 0.381, -0.104 ] } }, { "index": 1027, "index_chain": 1027, "chain_name": "A", "nt_resnum": 1051, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1051", "linked_nts": [ "///A/1050", "///A/1052" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop,cap-donor,splayed-apart", "alpha": 95.447, "beta": 168.236, "gamma": 56.704, "delta": 83.448, "epsilon": -160.049, "zeta": -51.904, "epsilon_zeta": -108.145, "bb_type": "BI", "chi": 175.859, "glyco_bond": "anti", "C5prime_xyz": [ -1.652, 8.453, 1.854 ], "P_xyz": [ 0.749, 8.679, 2.864 ], "form": "A", "ssZp": 4.222, "Dp": 4.386, "splay_angle": 23.318, "splay_distance": 3.795, "splay_ratio": 0.208, "d22": 4.767, "d64": 4.548, "eta": -2.848, "theta": -128.488, "eta_prime": 4.806, "theta_prime": -127.672, "eta_base": 126.191, "theta_base": -101.213, "v0": -1.313, "v1": -20.028, "v2": 32.314, "v3": -33.993, "v4": 22.275, "amplitude": 34.540, "phase_angle": 20.686, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3d", "suiteness": 0.206, "filter_rmsd": 0.066, "frame": { "rmsd": 0.009, "origin": [ 160.749, 119.557, 167.738 ], "x_axis": [ 0.675, 0.404, -0.618 ], "y_axis": [ -0.524, -0.326, -0.786 ], "z_axis": [ -0.519, 0.855, -0.008 ], "quaternion": [ 0.579, -0.709, 0.042, 0.401 ] } }, { "index": 1028, "index_chain": 1028, "chain_name": "A", "nt_resnum": 1052, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1052", "linked_nts": [ "///A/1051", "///A/1053" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -97.088, "beta": -150.716, "gamma": 54.398, "delta": 87.533, "epsilon": -178.559, "zeta": -73.275, "epsilon_zeta": -105.284, "bb_type": "BI", "chi": -145.563, "glyco_bond": "anti", "C5prime_xyz": [ -1.588, 8.808, -0.282 ], "P_xyz": [ 0.731, 9.525, 0.691 ], "form": "A", "ssZp": 3.716, "Dp": 4.015, "splay_angle": 20.123, "splay_distance": 3.477, "splay_ratio": 0.178, "d22": 4.259, "d64": 4.421, "eta": 162.249, "theta": -132.832, "eta_prime": -178.205, "theta_prime": -142.652, "eta_base": -135.621, "theta_base": -119.148, "v0": -0.972, "v1": -18.226, "v2": 29.184, "v3": -30.619, "v4": 19.925, "amplitude": 31.124, "phase_angle": 20.337, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.284, "filter_rmsd": 0.056, "frame": { "rmsd": 0.013, "origin": [ 160.656, 123.269, 168.523 ], "x_axis": [ 0.214, 0.017, -0.977 ], "y_axis": [ -0.857, -0.476, -0.196 ], "z_axis": [ -0.468, 0.879, -0.088 ], "quaternion": [ -0.403, 0.667, -0.315, -0.542 ] } }, { "index": 1029, "index_chain": 1029, "chain_name": "A", "nt_resnum": 1053, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1053", "linked_nts": [ "///A/1052", "///A/1054" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,junction-loop,phosphate", "alpha": 160.301, "beta": -159.658, "gamma": 162.849, "delta": 80.893, "epsilon": -105.439, "zeta": 9.727, "epsilon_zeta": 244.834, "bb_type": "--", "chi": -168.008, "glyco_bond": "anti", "C5prime_xyz": [ -1.413, 8.734, 0.995 ], "P_xyz": [ 0.389, 10.088, -0.317 ], "form": ".", "ssZp": 4.319, "Dp": 4.644, "splay_angle": 22.559, "splay_distance": 3.631, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 165.203, "theta": -39.101, "eta_prime": 175.523, "theta_prime": -70.236, "eta_base": -147.014, "theta_base": -107.665, "v0": -0.979, "v1": -21.530, "v2": 34.575, "v3": -36.110, "v4": 23.369, "amplitude": 36.816, "phase_angle": 20.094, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.473, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 160.462, 126.687, 167.921 ], "x_axis": [ -0.208, -0.228, -0.951 ], "y_axis": [ -0.895, -0.348, 0.279 ], "z_axis": [ -0.395, 0.909, -0.131 ], "quaternion": [ 0.280, -0.564, 0.498, 0.597 ] } }, { "index": 1030, "index_chain": 1030, "chain_name": "A", "nt_resnum": 1054, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1054", "linked_nts": [ "///A/1053", "///A/1055" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,junction-loop", "alpha": 170.343, "beta": 169.972, "gamma": 54.335, "delta": 148.552, "epsilon": -97.015, "zeta": 127.339, "epsilon_zeta": 135.646, "bb_type": "BII", "chi": -126.724, "glyco_bond": "anti", "C5prime_xyz": [ -1.601, 8.551, -0.812 ], "P_xyz": [ 0.859, 8.967, -0.019 ], "form": ".", "ssZp": 0.799, "Dp": 0.921, "splay_angle": 50.368, "splay_distance": 8.196, "splay_ratio": 0.430, "d22": null, "d64": null, "eta": 54.587, "theta": 143.443, "eta_prime": 111.814, "theta_prime": 130.856, "eta_base": 112.206, "theta_base": 137.668, "v0": -18.781, "v1": 33.755, "v2": -35.016, "v3": 25.065, "v4": -4.153, "amplitude": 35.826, "phase_angle": 167.790, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 158.577, 128.994, 165.844 ], "x_axis": [ 0.587, 0.357, 0.726 ], "y_axis": [ -0.753, -0.087, 0.652 ], "z_axis": [ 0.296, -0.930, 0.218 ], "quaternion": [ 0.655, 0.603, -0.164, 0.424 ] } }, { "index": 1031, "index_chain": 1031, "chain_name": "A", "nt_resnum": 1055, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1055", "linked_nts": [ "///A/1054", "///A/1056" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,phosphate", "alpha": 177.550, "beta": -156.144, "gamma": 75.797, "delta": 83.518, "epsilon": -102.221, "zeta": -119.372, "epsilon_zeta": 17.151, "bb_type": "--", "chi": -163.453, "glyco_bond": "anti", "C5prime_xyz": [ -1.275, 8.609, 0.744 ], "P_xyz": [ 1.313, 8.711, 1.089 ], "form": ".", "ssZp": 4.188, "Dp": 4.706, "splay_angle": 18.412, "splay_distance": 3.010, "splay_ratio": 0.170, "d22": null, "d64": null, "eta": 159.101, "theta": -148.993, "eta_prime": 140.850, "theta_prime": -141.849, "eta_base": 144.468, "theta_base": -114.028, "v0": 3.131, "v1": -24.520, "v2": 35.469, "v3": -34.633, "v4": 19.889, "amplitude": 36.528, "phase_angle": 13.829, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.011, "origin": [ 152.577, 129.802, 160.318 ], "x_axis": [ 0.834, -0.097, 0.543 ], "y_axis": [ -0.537, -0.369, 0.759 ], "z_axis": [ 0.127, -0.925, -0.359 ], "quaternion": [ 0.526, 0.800, -0.198, 0.209 ] } }, { "index": 1032, "index_chain": 1032, "chain_name": "A", "nt_resnum": 1056, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1056", "linked_nts": [ "///A/1055", "///A/1057" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,cap-acceptor,phosphate", "alpha": -53.835, "beta": 124.350, "gamma": 63.111, "delta": 83.741, "epsilon": -103.441, "zeta": -78.787, "epsilon_zeta": -24.654, "bb_type": "--", "chi": -142.541, "glyco_bond": "anti", "C5prime_xyz": [ -1.319, 8.644, -0.536 ], "P_xyz": [ 0.841, 8.081, -1.889 ], "form": ".", "ssZp": 3.189, "Dp": 4.717, "splay_angle": 78.300, "splay_distance": 12.831, "splay_ratio": 0.632, "d22": null, "d64": null, "eta": 172.831, "theta": -121.419, "eta_prime": -176.284, "theta_prime": -141.613, "eta_base": -144.121, "theta_base": 172.845, "v0": 2.864, "v1": -24.480, "v2": 35.473, "v3": -34.816, "v4": 20.194, "amplitude": 36.595, "phase_angle": 14.220, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.454, "filter_rmsd": 0.040, "frame": { "rmsd": 0.011, "origin": [ 153.119, 126.917, 159.649 ], "x_axis": [ 0.514, -0.270, 0.814 ], "y_axis": [ -0.749, -0.604, 0.273 ], "z_axis": [ 0.418, -0.750, -0.512 ], "quaternion": [ 0.315, 0.811, -0.314, 0.380 ] } }, { "index": 1033, "index_chain": 1033, "chain_name": "A", "nt_resnum": 1057, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1057", "linked_nts": [ "///A/1056", "///A/1058" ], "nt_type": "RNA", "dbn": "(", "summary": "~C2'-endo,isolated-canonical,non-pair-contact,helix,bulge,junction-loop,phosphate,splayed-apart", "alpha": -55.250, "beta": -115.581, "gamma": -63.262, "delta": 146.990, "epsilon": -98.971, "zeta": -119.954, "epsilon_zeta": 20.983, "bb_type": "--", "chi": -67.960, "glyco_bond": "--", "C5prime_xyz": [ -3.144, 6.904, -3.009 ], "P_xyz": [ -4.613, 8.134, -4.798 ], "form": ".", "ssZp": 0.317, "Dp": 0.907, "splay_angle": 112.868, "splay_distance": 18.278, "splay_ratio": 0.834, "d22": null, "d64": null, "eta": 148.964, "theta": -126.126, "eta_prime": 147.356, "theta_prime": -129.999, "eta_base": 117.567, "theta_base": -119.620, "v0": -21.637, "v1": 35.726, "v2": -35.467, "v3": 23.833, "v4": -1.585, "amplitude": 36.955, "phase_angle": 163.688, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "1o", "suiteness": 0.221, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 151.459, 119.062, 149.641 ], "x_axis": [ 0.783, 0.608, -0.126 ], "y_axis": [ 0.206, -0.063, 0.976 ], "z_axis": [ 0.586, -0.791, -0.175 ], "quaternion": [ 0.622, 0.711, 0.287, 0.162 ] } }, { "index": 1034, "index_chain": 1034, "chain_name": "A", "nt_resnum": 1058, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1058", "linked_nts": [ "///A/1057", "///A/1059" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,bulge,cap-acceptor,phosphate,splayed-apart", "alpha": 94.255, "beta": -124.611, "gamma": -65.629, "delta": 148.343, "epsilon": -145.989, "zeta": 79.664, "epsilon_zeta": 134.347, "bb_type": "--", "chi": -141.396, "glyco_bond": "anti", "C5prime_xyz": [ -2.048, 8.741, -0.078 ], "P_xyz": [ -2.549, 11.289, -0.478 ], "form": ".", "ssZp": 1.413, "Dp": 1.781, "splay_angle": 129.363, "splay_distance": 18.134, "splay_ratio": 0.904, "d22": null, "d64": null, "eta": -94.549, "theta": 31.448, "eta_prime": -67.839, "theta_prime": 39.507, "eta_base": -59.578, "theta_base": 89.197, "v0": -23.409, "v1": 38.098, "v2": -37.438, "v3": 24.890, "v4": -1.171, "amplitude": 39.169, "phase_angle": 162.900, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.100, "frame": { "rmsd": 0.007, "origin": [ 158.426, 112.440, 165.188 ], "x_axis": [ -0.291, 0.258, 0.921 ], "y_axis": [ -0.906, 0.234, -0.352 ], "z_axis": [ -0.307, -0.937, 0.166 ], "quaternion": [ 0.527, 0.278, -0.583, 0.553 ] } }, { "index": 1035, "index_chain": 1035, "chain_name": "A", "nt_resnum": 1059, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1059", "linked_nts": [ "///A/1058", "///A/1060" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart", "alpha": 48.432, "beta": 161.306, "gamma": -68.272, "delta": 79.923, "epsilon": -133.464, "zeta": -79.197, "epsilon_zeta": -54.267, "bb_type": "BI", "chi": 173.340, "glyco_bond": "anti", "C5prime_xyz": [ -1.673, 8.283, 2.000 ], "P_xyz": [ -1.461, 9.704, 4.203 ], "form": "A", "ssZp": 4.650, "Dp": 4.676, "splay_angle": 25.015, "splay_distance": 3.957, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": -176.013, "theta": -177.294, "eta_prime": 175.407, "theta_prime": -161.444, "eta_base": 149.538, "theta_base": -116.894, "v0": 0.644, "v1": -23.155, "v2": 35.629, "v3": -36.230, "v4": 22.432, "amplitude": 37.386, "phase_angle": 17.638, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.043, "frame": { "rmsd": 0.009, "origin": [ 154.209, 116.465, 148.017 ], "x_axis": [ 0.737, 0.628, 0.251 ], "y_axis": [ -0.220, -0.129, 0.967 ], "z_axis": [ 0.640, -0.767, 0.043 ], "quaternion": [ 0.642, 0.675, 0.151, 0.330 ] } }, { "index": 1036, "index_chain": 1036, "chain_name": "A", "nt_resnum": 1060, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1060", "linked_nts": [ "///A/1059", "///A/1061" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -56.501, "beta": 176.932, "gamma": 41.151, "delta": 80.107, "epsilon": -151.025, "zeta": -93.521, "epsilon_zeta": -57.504, "bb_type": "BI", "chi": -166.981, "glyco_bond": "anti", "C5prime_xyz": [ -1.412, 8.641, 0.918 ], "P_xyz": [ 1.043, 9.151, 1.658 ], "form": ".", "ssZp": 4.559, "Dp": 4.630, "splay_angle": 18.672, "splay_distance": 3.107, "splay_ratio": 0.171, "d22": null, "d64": null, "eta": 164.337, "theta": -138.497, "eta_prime": 176.847, "theta_prime": -143.355, "eta_base": -142.698, "theta_base": -135.975, "v0": 2.377, "v1": -24.908, "v2": 36.742, "v3": -36.377, "v4": 21.398, "amplitude": 38.054, "phase_angle": 15.090, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.647, "filter_rmsd": 0.096, "frame": { "rmsd": 0.010, "origin": [ 157.290, 114.680, 146.291 ], "x_axis": [ 0.416, 0.475, 0.775 ], "y_axis": [ -0.631, -0.463, 0.622 ], "z_axis": [ 0.655, -0.748, 0.108 ], "quaternion": [ 0.515, 0.665, -0.059, 0.537 ] } }, { "index": 1037, "index_chain": 1037, "chain_name": "A", "nt_resnum": 1061, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1061", "linked_nts": [ "///A/1060", "///A/1062" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 177.441, "beta": -154.950, "gamma": 144.689, "delta": 82.334, "epsilon": -146.518, "zeta": -123.718, "epsilon_zeta": -22.799, "bb_type": "--", "chi": -173.439, "glyco_bond": "anti", "C5prime_xyz": [ -1.571, 8.584, 1.316 ], "P_xyz": [ 0.710, 9.556, 0.494 ], "form": "A", "ssZp": 4.455, "Dp": 4.522, "splay_angle": 22.334, "splay_distance": 3.487, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 147.926, "theta": -159.308, "eta_prime": 163.473, "theta_prime": -157.266, "eta_base": -175.140, "theta_base": -135.678, "v0": -0.665, "v1": -20.900, "v2": 33.256, "v3": -34.619, "v4": 22.252, "amplitude": 35.322, "phase_angle": 19.695, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.043, "frame": { "rmsd": 0.010, "origin": [ 160.141, 113.990, 145.267 ], "x_axis": [ -0.261, 0.484, 0.835 ], "y_axis": [ -0.578, -0.771, 0.266 ], "z_axis": [ 0.773, -0.414, 0.481 ], "quaternion": [ 0.335, 0.507, -0.047, 0.793 ] } }, { "index": 1038, "index_chain": 1038, "chain_name": "A", "nt_resnum": 1062, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1062", "linked_nts": [ "///A/1061", "///A/1063" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 28.970, "beta": 111.335, "gamma": 8.073, "delta": 78.377, "epsilon": -142.919, "zeta": -85.231, "epsilon_zeta": -57.688, "bb_type": "BI", "chi": -152.987, "glyco_bond": "anti", "C5prime_xyz": [ -1.903, 8.928, 0.056 ], "P_xyz": [ 0.516, 9.051, 1.042 ], "form": "A", "ssZp": 4.102, "Dp": 4.529, "splay_angle": 24.926, "splay_distance": 4.107, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 174.428, "theta": -143.205, "eta_prime": -177.432, "theta_prime": -142.850, "eta_base": -148.857, "theta_base": -124.144, "v0": -5.013, "v1": -18.672, "v2": 33.855, "v3": -37.759, "v4": 26.930, "amplitude": 37.697, "phase_angle": 26.093, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.008, "origin": [ 163.441, 113.951, 146.394 ], "x_axis": [ -0.571, 0.074, 0.818 ], "y_axis": [ -0.346, -0.925, -0.159 ], "z_axis": [ 0.744, -0.374, 0.553 ], "quaternion": [ 0.120, 0.447, -0.152, 0.873 ] } }, { "index": 1039, "index_chain": 1039, "chain_name": "A", "nt_resnum": 1063, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1063", "linked_nts": [ "///A/1062", "///A/1064" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -60.008, "beta": 156.732, "gamma": 59.079, "delta": 78.312, "epsilon": -157.323, "zeta": -79.188, "epsilon_zeta": -78.135, "bb_type": "BI", "chi": -163.625, "glyco_bond": "anti", "C5prime_xyz": [ -1.998, 8.788, 0.686 ], "P_xyz": [ 0.474, 9.593, 0.488 ], "form": "A", "ssZp": 4.451, "Dp": 4.531, "splay_angle": 19.517, "splay_distance": 3.083, "splay_ratio": 0.171, "d22": null, "d64": null, "eta": 164.109, "theta": -156.392, "eta_prime": 177.536, "theta_prime": -158.377, "eta_base": -148.695, "theta_base": -132.009, "v0": -2.335, "v1": -21.629, "v2": 35.930, "v3": -38.321, "v4": 25.603, "amplitude": 38.746, "phase_angle": 21.979, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.740, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 166.400, 113.486, 149.203 ], "x_axis": [ -0.813, -0.225, 0.538 ], "y_axis": [ -0.091, -0.863, -0.498 ], "z_axis": [ 0.576, -0.453, 0.680 ], "quaternion": [ -0.037, 0.304, -0.260, 0.916 ] } }, { "index": 1040, "index_chain": 1040, "chain_name": "A", "nt_resnum": 1064, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1064", "linked_nts": [ "///A/1063", "///A/1065" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -57.639, "beta": 167.966, "gamma": 53.414, "delta": 82.726, "epsilon": -110.626, "zeta": -96.269, "epsilon_zeta": -14.357, "bb_type": "--", "chi": -157.371, "glyco_bond": "anti", "C5prime_xyz": [ -1.448, 8.737, 0.373 ], "P_xyz": [ 1.140, 9.144, 0.471 ], "form": ".", "ssZp": 4.000, "Dp": 4.655, "splay_angle": 24.749, "splay_distance": 4.048, "splay_ratio": 0.214, "d22": 4.949, "d64": 5.063, "eta": -177.824, "theta": -145.027, "eta_prime": -171.549, "theta_prime": -142.994, "eta_base": -137.848, "theta_base": -126.103, "v0": 0.881, "v1": -22.442, "v2": 34.265, "v3": -34.721, "v4": 21.345, "amplitude": 35.878, "phase_angle": 17.249, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.871, "filter_rmsd": 0.099, "frame": { "rmsd": 0.008, "origin": [ 167.638, 113.368, 152.025 ], "x_axis": [ -0.729, -0.658, 0.190 ], "y_axis": [ 0.440, -0.663, -0.606 ], "z_axis": [ 0.525, -0.358, 0.772 ], "quaternion": [ -0.309, 0.201, -0.271, 0.889 ] } }, { "index": 1041, "index_chain": 1041, "chain_name": "A", "nt_resnum": 1065, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1065", "linked_nts": [ "///A/1064", "///A/1066" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate", "alpha": -74.196, "beta": 118.830, "gamma": 97.510, "delta": 79.011, "epsilon": -92.189, "zeta": -144.095, "epsilon_zeta": 51.905, "bb_type": "--", "chi": -160.945, "glyco_bond": "anti", "C5prime_xyz": [ -1.595, 8.763, 0.552 ], "P_xyz": [ 0.030, 9.245, -1.422 ], "form": ".", "ssZp": 3.929, "Dp": 4.649, "splay_angle": 40.342, "splay_distance": 6.417, "splay_ratio": 0.346, "d22": null, "d64": null, "eta": 178.661, "theta": -131.878, "eta_prime": -171.001, "theta_prime": -128.925, "eta_base": -146.670, "theta_base": -114.571, "v0": 0.068, "v1": -23.553, "v2": 36.829, "v3": -37.779, "v4": 23.735, "amplitude": 38.832, "phase_angle": 18.486, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 169.169, 112.098, 155.551 ], "x_axis": [ -0.505, -0.862, 0.045 ], "y_axis": [ 0.731, -0.454, -0.509 ], "z_axis": [ 0.459, -0.224, 0.860 ], "quaternion": [ -0.475, 0.150, -0.218, 0.839 ] } }, { "index": 1042, "index_chain": 1042, "chain_name": "A", "nt_resnum": 1066, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1066", "linked_nts": [ "///A/1065", "///A/1067" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,cap-donor", "alpha": 150.412, "beta": -124.609, "gamma": 177.085, "delta": 143.686, "epsilon": -93.656, "zeta": 113.430, "epsilon_zeta": 152.913, "bb_type": "--", "chi": -140.770, "glyco_bond": "anti", "C5prime_xyz": [ -1.738, 8.680, -0.124 ], "P_xyz": [ 0.416, 8.822, -1.596 ], "form": ".", "ssZp": 1.135, "Dp": 1.094, "splay_angle": 31.646, "splay_distance": 5.372, "splay_ratio": 0.298, "d22": null, "d64": null, "eta": -144.969, "theta": 99.308, "eta_prime": -145.225, "theta_prime": 82.937, "eta_base": -132.375, "theta_base": 45.976, "v0": -20.564, "v1": 33.345, "v2": -32.734, "v3": 21.697, "v4": -0.872, "amplitude": 34.281, "phase_angle": 162.720, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.007, "origin": [ 171.181, 107.474, 159.520 ], "x_axis": [ -0.392, -0.406, -0.826 ], "y_axis": [ 0.880, 0.097, -0.465 ], "z_axis": [ 0.268, -0.909, 0.319 ], "quaternion": [ 0.506, 0.219, 0.541, -0.635 ] } }, { "index": 1043, "index_chain": 1043, "chain_name": "A", "nt_resnum": 1067, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1067", "linked_nts": [ "///A/1066", "///A/1068" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-canonical,non-pair-contact,internal-loop,cap-acceptor", "alpha": 71.839, "beta": -157.031, "gamma": 173.517, "delta": 81.509, "epsilon": -106.270, "zeta": -82.912, "epsilon_zeta": -23.358, "bb_type": "--", "chi": -71.699, "glyco_bond": "--", "C5prime_xyz": [ -2.823, 6.311, -3.411 ], "P_xyz": [ -3.401, 4.688, -5.363 ], "form": ".", "ssZp": -2.262, "Dp": 4.791, "splay_angle": 47.204, "splay_distance": 8.491, "splay_ratio": 0.404, "d22": null, "d64": null, "eta": 145.157, "theta": -120.344, "eta_prime": 129.582, "theta_prime": -128.290, "eta_base": 105.897, "theta_base": -137.308, "v0": 4.068, "v1": -25.604, "v2": 36.298, "v3": -34.934, "v4": 19.471, "amplitude": 37.177, "phase_angle": 12.484, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6n", "suiteness": 0.426, "filter_rmsd": 0.038, "frame": { "rmsd": 0.013, "origin": [ 174.153, 111.432, 157.433 ], "x_axis": [ -0.818, -0.118, 0.564 ], "y_axis": [ 0.439, 0.505, 0.743 ], "z_axis": [ -0.373, 0.855, -0.361 ], "quaternion": [ -0.286, 0.098, 0.819, 0.488 ] } }, { "index": 1044, "index_chain": 1044, "chain_name": "A", "nt_resnum": 1068, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1068", "linked_nts": [ "///A/1067", "///A/1069" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop", "alpha": 87.090, "beta": -114.540, "gamma": -61.739, "delta": 144.471, "epsilon": -131.320, "zeta": 122.226, "epsilon_zeta": 106.454, "bb_type": "--", "chi": -96.054, "glyco_bond": "anti", "C5prime_xyz": [ -2.582, 7.956, -2.288 ], "P_xyz": [ -3.792, 9.811, -3.698 ], "form": ".", "ssZp": 1.497, "Dp": 1.656, "splay_angle": 52.058, "splay_distance": 8.561, "splay_ratio": 0.440, "d22": null, "d64": null, "eta": -97.571, "theta": 78.006, "eta_prime": -83.106, "theta_prime": 84.062, "eta_base": -99.811, "theta_base": 91.319, "v0": -23.986, "v1": 36.651, "v2": -34.592, "v3": 21.662, "v4": 1.277, "amplitude": 36.982, "phase_angle": 159.289, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 169.059, 113.397, 163.936 ], "x_axis": [ -0.362, -0.375, 0.853 ], "y_axis": [ 0.827, 0.294, 0.480 ], "z_axis": [ -0.430, 0.879, 0.204 ], "quaternion": [ 0.533, -0.188, -0.602, -0.564 ] } }, { "index": 1045, "index_chain": 1045, "chain_name": "A", "nt_resnum": 1069, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1069", "linked_nts": [ "///A/1068", "///A/1070" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": 125.094, "beta": -149.485, "gamma": 137.731, "delta": 78.492, "epsilon": -106.313, "zeta": -45.482, "epsilon_zeta": -60.831, "bb_type": "--", "chi": -159.286, "glyco_bond": "anti", "C5prime_xyz": [ -1.362, 8.685, 0.473 ], "P_xyz": [ 0.688, 9.235, -1.046 ], "form": ".", "ssZp": 4.133, "Dp": 4.816, "splay_angle": 49.839, "splay_distance": 7.916, "splay_ratio": 0.422, "d22": null, "d64": null, "eta": 146.412, "theta": -93.019, "eta_prime": 135.088, "theta_prime": -90.836, "eta_base": 139.638, "theta_base": -46.313, "v0": 3.892, "v1": -26.843, "v2": 38.460, "v3": -37.248, "v4": 20.996, "amplitude": 39.485, "phase_angle": 13.084, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.008, "origin": [ 173.132, 114.845, 156.547 ], "x_axis": [ -0.819, 0.015, 0.574 ], "y_axis": [ 0.480, 0.566, 0.670 ], "z_axis": [ -0.315, 0.824, -0.471 ], "quaternion": [ -0.263, 0.146, 0.845, 0.442 ] } }, { "index": 1046, "index_chain": 1046, "chain_name": "A", "nt_resnum": 1070, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1070", "linked_nts": [ "///A/1069", "///A/1071" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop", "alpha": -65.152, "beta": 177.190, "gamma": 52.367, "delta": 78.088, "epsilon": -163.625, "zeta": 90.498, "epsilon_zeta": 105.877, "bb_type": "--", "chi": -145.266, "glyco_bond": "anti", "C5prime_xyz": [ -1.391, 8.856, -0.390 ], "P_xyz": [ 1.144, 9.477, -0.565 ], "form": ".", "ssZp": 3.971, "Dp": 4.526, "splay_angle": 22.634, "splay_distance": 3.600, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 151.333, "theta": -18.849, "eta_prime": -169.416, "theta_prime": -62.340, "eta_base": -96.717, "theta_base": -102.841, "v0": -0.519, "v1": -22.563, "v2": 35.735, "v3": -37.065, "v4": 23.731, "amplitude": 37.888, "phase_angle": 19.410, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.139, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 170.627, 117.693, 163.495 ], "x_axis": [ 0.578, 0.196, 0.792 ], "y_axis": [ 0.599, 0.558, -0.575 ], "z_axis": [ -0.555, 0.807, 0.205 ], "quaternion": [ 0.765, -0.452, -0.440, -0.131 ] } }, { "index": 1047, "index_chain": 1047, "chain_name": "A", "nt_resnum": 1071, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1071", "linked_nts": [ "///A/1070", "///A/1072" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,cap-acceptor,splayed-apart", "alpha": -42.016, "beta": -113.736, "gamma": 176.777, "delta": 146.769, "epsilon": -148.332, "zeta": 95.524, "epsilon_zeta": 116.144, "bb_type": "--", "chi": -150.732, "glyco_bond": "anti", "C5prime_xyz": [ -1.704, 8.724, 0.513 ], "P_xyz": [ 0.709, 8.826, -0.552 ], "form": ".", "ssZp": 1.507, "Dp": 1.840, "splay_angle": 147.753, "splay_distance": 18.685, "splay_ratio": 0.961, "d22": null, "d64": null, "eta": 31.169, "theta": 93.166, "eta_prime": 111.473, "theta_prime": 49.408, "eta_base": 114.518, "theta_base": 179.021, "v0": -20.031, "v1": 34.511, "v2": -35.062, "v3": 24.390, "v4": -2.928, "amplitude": 36.161, "phase_angle": 165.841, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 170.313, 120.734, 165.396 ], "x_axis": [ -0.681, -0.521, -0.514 ], "y_axis": [ 0.272, 0.472, -0.838 ], "z_axis": [ 0.680, -0.711, -0.180 ], "quaternion": [ 0.391, -0.081, 0.764, -0.507 ] } }, { "index": 1048, "index_chain": 1048, "chain_name": "A", "nt_resnum": 1072, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1072", "linked_nts": [ "///A/1071", "///A/1073" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": 71.607, "beta": 160.582, "gamma": 14.852, "delta": 149.741, "epsilon": -165.184, "zeta": -88.521, "epsilon_zeta": -76.663, "bb_type": "BI", "chi": -139.392, "glyco_bond": "anti", "C5prime_xyz": [ -2.142, 8.709, -0.126 ], "P_xyz": [ -0.476, 9.746, 1.631 ], "form": ".", "ssZp": 1.866, "Dp": 2.142, "splay_angle": 27.520, "splay_distance": 4.116, "splay_ratio": 0.242, "d22": null, "d64": null, "eta": -79.156, "theta": -116.316, "eta_prime": -63.044, "theta_prime": -132.553, "eta_base": 174.203, "theta_base": -50.338, "v0": -23.932, "v1": 39.443, "v2": -38.860, "v3": 25.933, "v4": -1.449, "amplitude": 40.582, "phase_angle": 163.251, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.036, "frame": { "rmsd": 0.007, "origin": [ 186.169, 130.573, 164.449 ], "x_axis": [ 0.037, -0.401, 0.915 ], "y_axis": [ -0.942, -0.319, -0.102 ], "z_axis": [ 0.333, -0.859, -0.389 ], "quaternion": [ 0.287, 0.661, -0.508, 0.472 ] } }, { "index": 1049, "index_chain": 1049, "chain_name": "A", "nt_resnum": 1073, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1073", "linked_nts": [ "///A/1072", "///A/1074" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,BII,non-pair-contact,junction-loop", "alpha": -64.467, "beta": -152.825, "gamma": 8.711, "delta": 139.151, "epsilon": -100.904, "zeta": 146.809, "epsilon_zeta": 112.288, "bb_type": "BII", "chi": 67.070, "glyco_bond": "syn", "C5prime_xyz": [ -5.393, 4.491, 1.672 ], "P_xyz": [ -7.474, 2.969, 1.133 ], "form": ".", "ssZp": -1.062, "Dp": 1.091, "splay_angle": 63.724, "splay_distance": 9.882, "splay_ratio": 0.533, "d22": null, "d64": null, "eta": 178.115, "theta": 161.543, "eta_prime": -167.525, "theta_prime": 170.434, "eta_base": -78.063, "theta_base": -177.410, "v0": -26.318, "v1": 36.183, "v2": -31.682, "v3": 17.395, "v4": 5.395, "amplitude": 35.679, "phase_angle": 152.620, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 185.010, 126.671, 163.844 ], "x_axis": [ 0.765, -0.045, 0.643 ], "y_axis": [ 0.581, 0.479, -0.658 ], "z_axis": [ -0.279, 0.877, 0.392 ], "quaternion": [ 0.812, -0.473, -0.284, -0.193 ] } }, { "index": 1050, "index_chain": 1050, "chain_name": "A", "nt_resnum": 1074, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1074", "linked_nts": [ "///A/1073", "///A/1075" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-pair-contact,junction-loop", "alpha": 145.044, "beta": -120.338, "gamma": 99.062, "delta": 79.956, "epsilon": -160.153, "zeta": -105.499, "epsilon_zeta": -54.653, "bb_type": "BI", "chi": -177.521, "glyco_bond": "anti", "C5prime_xyz": [ -1.796, 8.527, 1.495 ], "P_xyz": [ 0.761, 8.240, 1.979 ], "form": ".", "ssZp": 4.493, "Dp": 4.509, "splay_angle": 29.461, "splay_distance": 4.331, "splay_ratio": 0.254, "d22": null, "d64": null, "eta": 142.458, "theta": -165.352, "eta_prime": 137.210, "theta_prime": -168.797, "eta_base": 152.826, "theta_base": -165.779, "v0": -1.138, "v1": -21.564, "v2": 34.790, "v3": -36.446, "v4": 23.672, "amplitude": 37.103, "phase_angle": 20.340, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 192.646, 127.216, 157.595 ], "x_axis": [ -0.549, -0.267, 0.792 ], "y_axis": [ -0.770, 0.532, -0.354 ], "z_axis": [ -0.327, -0.804, -0.497 ], "quaternion": [ -0.349, -0.323, 0.803, -0.361 ] } }, { "index": 1051, "index_chain": 1051, "chain_name": "A", "nt_resnum": 1075, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1075", "linked_nts": [ "///A/1074", "///A/1076" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,A-minor,phosphate", "alpha": -37.677, "beta": 146.369, "gamma": 58.300, "delta": 83.125, "epsilon": 166.308, "zeta": 34.821, "epsilon_zeta": 131.487, "bb_type": "--", "chi": -160.121, "glyco_bond": "anti", "C5prime_xyz": [ -1.105, 8.605, 0.568 ], "P_xyz": [ 1.453, 8.469, 0.028 ], "form": ".", "ssZp": 4.207, "Dp": 4.241, "splay_angle": 35.922, "splay_distance": 5.759, "splay_ratio": 0.312, "d22": null, "d64": null, "eta": 179.472, "theta": -79.917, "eta_prime": -164.916, "theta_prime": -102.853, "eta_base": -149.897, "theta_base": -61.680, "v0": 5.069, "v1": -25.661, "v2": 35.343, "v3": -33.423, "v4": 17.928, "amplitude": 35.972, "phase_angle": 10.734, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.112, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 195.124, 124.743, 155.045 ], "x_axis": [ -0.766, -0.533, 0.359 ], "y_axis": [ -0.618, 0.457, -0.640 ], "z_axis": [ 0.177, -0.712, -0.679 ], "quaternion": [ -0.054, -0.338, 0.852, -0.397 ] } }, { "index": 1052, "index_chain": 1052, "chain_name": "A", "nt_resnum": 1076, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1076", "linked_nts": [ "///A/1075", "///A/1077" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,phosphate", "alpha": -170.005, "beta": 121.015, "gamma": 127.203, "delta": 85.240, "epsilon": -124.654, "zeta": -81.108, "epsilon_zeta": -43.546, "bb_type": "--", "chi": 173.464, "glyco_bond": "anti", "C5prime_xyz": [ -1.214, 8.014, 2.037 ], "P_xyz": [ 0.265, 9.667, 0.666 ], "form": "A", "ssZp": 4.802, "Dp": 4.803, "splay_angle": 22.801, "splay_distance": 3.594, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 145.932, "theta": -158.435, "eta_prime": -176.629, "theta_prime": -156.882, "eta_base": -92.853, "theta_base": -128.361, "v0": 9.573, "v1": -29.148, "v2": 36.570, "v3": -32.106, "v4": 14.266, "amplitude": 36.655, "phase_angle": 3.889, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 190.996, 121.016, 153.550 ], "x_axis": [ -0.918, 0.154, -0.364 ], "y_axis": [ 0.373, 0.643, -0.669 ], "z_axis": [ 0.131, -0.750, -0.648 ], "quaternion": [ 0.138, 0.147, 0.896, -0.396 ] } }, { "index": 1053, "index_chain": 1053, "chain_name": "A", "nt_resnum": 1077, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1077", "linked_nts": [ "///A/1076", "///A/1078" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -60.037, "beta": 165.725, "gamma": 51.310, "delta": 79.260, "epsilon": -148.988, "zeta": -77.760, "epsilon_zeta": -71.228, "bb_type": "BI", "chi": -171.382, "glyco_bond": "anti", "C5prime_xyz": [ -1.600, 8.619, 1.178 ], "P_xyz": [ 0.951, 9.082, 1.522 ], "form": "A", "ssZp": 4.633, "Dp": 4.660, "splay_angle": 27.164, "splay_distance": 4.029, "splay_ratio": 0.235, "d22": null, "d64": null, "eta": 160.393, "theta": -148.736, "eta_prime": 177.777, "theta_prime": -146.785, "eta_base": -136.093, "theta_base": -110.648, "v0": 2.466, "v1": -25.539, "v2": 37.654, "v3": -37.246, "v4": 21.912, "amplitude": 38.991, "phase_angle": 15.047, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.641, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 189.546, 117.879, 152.564 ], "x_axis": [ -0.512, 0.562, -0.650 ], "y_axis": [ 0.858, 0.374, -0.352 ], "z_axis": [ 0.045, -0.738, -0.673 ], "quaternion": [ 0.217, 0.444, 0.800, -0.341 ] } }, { "index": 1054, "index_chain": 1054, "chain_name": "A", "nt_resnum": 1078, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1078", "linked_nts": [ "///A/1077", "///A/1079" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": -55.159, "beta": 163.394, "gamma": 53.687, "delta": 81.902, "epsilon": -113.047, "zeta": -140.433, "epsilon_zeta": 27.387, "bb_type": "--", "chi": 179.905, "glyco_bond": "anti", "C5prime_xyz": [ -1.342, 8.258, 1.687 ], "P_xyz": [ 1.252, 8.306, 2.037 ], "form": ".", "ssZp": 4.768, "Dp": 4.809, "splay_angle": 93.724, "splay_distance": 14.147, "splay_ratio": 0.734, "d22": null, "d64": null, "eta": 178.478, "theta": -127.258, "eta_prime": -170.175, "theta_prime": -160.816, "eta_base": -121.095, "theta_base": 168.996, "v0": 6.260, "v1": -27.669, "v2": 37.490, "v3": -34.901, "v4": 18.057, "amplitude": 37.996, "phase_angle": 9.365, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.867, "filter_rmsd": 0.036, "frame": { "rmsd": 0.007, "origin": [ 188.231, 115.500, 149.590 ], "x_axis": [ 0.151, 0.685, -0.713 ], "y_axis": [ 0.973, 0.024, 0.229 ], "z_axis": [ 0.174, -0.728, -0.663 ], "quaternion": [ 0.358, 0.669, 0.620, -0.201 ] } }, { "index": 1055, "index_chain": 1055, "chain_name": "A", "nt_resnum": 1079, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1079", "linked_nts": [ "///A/1078", "///A/1080" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BI,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart", "alpha": 147.163, "beta": -109.133, "gamma": 11.438, "delta": 150.402, "epsilon": -169.679, "zeta": -104.668, "epsilon_zeta": -65.011, "bb_type": "BI", "chi": -141.831, "glyco_bond": "anti", "C5prime_xyz": [ -2.118, 8.723, -0.014 ], "P_xyz": [ -2.585, 10.166, 2.120 ], "form": ".", "ssZp": 1.424, "Dp": 2.073, "splay_angle": 114.089, "splay_distance": 14.320, "splay_ratio": 0.839, "d22": null, "d64": null, "eta": 12.006, "theta": -153.102, "eta_prime": 31.650, "theta_prime": -172.407, "eta_base": 5.862, "theta_base": 175.334, "v0": -23.746, "v1": 39.689, "v2": -39.516, "v3": 26.824, "v4": -2.202, "amplitude": 41.067, "phase_angle": 164.202, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 189.091, 101.919, 153.458 ], "x_axis": [ 0.678, -0.698, 0.229 ], "y_axis": [ 0.707, 0.536, -0.461 ], "z_axis": [ 0.199, 0.474, 0.858 ], "quaternion": [ 0.876, -0.267, -0.008, -0.401 ] } }, { "index": 1056, "index_chain": 1056, "chain_name": "A", "nt_resnum": 1080, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1080", "linked_nts": [ "///A/1079", "///A/1081" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart", "alpha": -24.341, "beta": -159.608, "gamma": 123.055, "delta": 81.701, "epsilon": 94.088, "zeta": 75.695, "epsilon_zeta": 18.392, "bb_type": "--", "chi": -151.618, "glyco_bond": "anti", "C5prime_xyz": [ -0.480, 8.312, 0.086 ], "P_xyz": [ 1.665, 7.957, -1.393 ], "form": "B", "ssZp": 3.337, "Dp": 3.641, "splay_angle": 23.219, "splay_distance": 3.812, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": -40.734, "theta": -123.042, "eta_prime": -22.591, "theta_prime": -138.460, "eta_base": -18.426, "theta_base": -115.729, "v0": 15.357, "v1": -33.787, "v2": 38.731, "v3": -30.968, "v4": 10.031, "amplitude": 38.821, "phase_angle": 356.091, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.020, "frame": { "rmsd": 0.020, "origin": [ 182.057, 113.640, 149.191 ], "x_axis": [ 0.579, 0.532, -0.617 ], "y_axis": [ 0.752, -0.641, 0.153 ], "z_axis": [ -0.314, -0.553, -0.772 ], "quaternion": [ 0.204, 0.865, 0.371, -0.269 ] } }, { "index": 1057, "index_chain": 1057, "chain_name": "A", "nt_resnum": 1081, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1081", "linked_nts": [ "///A/1080", "///A/1082" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -147.740, "beta": 156.754, "gamma": 65.082, "delta": 79.951, "epsilon": -166.682, "zeta": -78.346, "epsilon_zeta": -88.336, "bb_type": "BI", "chi": -149.507, "glyco_bond": "anti", "C5prime_xyz": [ -1.816, 8.835, -0.142 ], "P_xyz": [ 0.623, 9.376, -0.915 ], "form": ".", "ssZp": 4.096, "Dp": 4.418, "splay_angle": 26.188, "splay_distance": 4.859, "splay_ratio": 0.243, "d22": null, "d64": null, "eta": 142.926, "theta": -131.096, "eta_prime": 176.746, "theta_prime": -151.434, "eta_base": -136.377, "theta_base": -149.137, "v0": -2.707, "v1": -20.377, "v2": 34.390, "v3": -36.904, "v4": 24.965, "amplitude": 37.268, "phase_angle": 22.665, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 181.266, 112.159, 145.769 ], "x_axis": [ 0.906, 0.130, -0.402 ], "y_axis": [ 0.306, -0.858, 0.412 ], "z_axis": [ -0.291, -0.497, -0.818 ], "quaternion": [ 0.240, 0.946, 0.115, -0.183 ] } }, { "index": 1058, "index_chain": 1058, "chain_name": "A", "nt_resnum": 1082, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1082", "linked_nts": [ "///A/1081", "///A/1083" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 121.579, "beta": -165.845, "gamma": -148.568, "delta": 81.053, "epsilon": -118.623, "zeta": -85.822, "epsilon_zeta": -32.801, "bb_type": "--", "chi": 176.429, "glyco_bond": "anti", "C5prime_xyz": [ -1.491, 8.332, 1.885 ], "P_xyz": [ -0.574, 10.768, 1.643 ], "form": "A", "ssZp": 4.745, "Dp": 4.747, "splay_angle": 24.931, "splay_distance": 3.902, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 168.453, "theta": -171.550, "eta_prime": 171.365, "theta_prime": -158.056, "eta_base": -167.753, "theta_base": -105.959, "v0": 3.218, "v1": -25.201, "v2": 36.500, "v3": -35.640, "v4": 20.426, "amplitude": 37.590, "phase_angle": 13.826, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 179.441, 112.668, 141.295 ], "x_axis": [ 0.997, 0.072, -0.024 ], "y_axis": [ 0.071, -0.778, 0.624 ], "z_axis": [ 0.027, -0.624, -0.781 ], "quaternion": [ 0.331, 0.943, 0.038, 0.001 ] } }, { "index": 1059, "index_chain": 1059, "chain_name": "A", "nt_resnum": 1083, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1083", "linked_nts": [ "///A/1082", "///A/1084" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -46.160, "beta": 147.762, "gamma": 51.633, "delta": 78.842, "epsilon": -159.194, "zeta": -56.419, "epsilon_zeta": -102.775, "bb_type": "BI", "chi": -175.726, "glyco_bond": "anti", "C5prime_xyz": [ -1.908, 8.604, 1.392 ], "P_xyz": [ 0.649, 9.060, 1.647 ], "form": ".", "ssZp": 4.504, "Dp": 4.529, "splay_angle": 38.560, "splay_distance": 5.725, "splay_ratio": 0.331, "d22": null, "d64": null, "eta": 157.934, "theta": -102.469, "eta_prime": -177.186, "theta_prime": -110.690, "eta_base": -111.212, "theta_base": -47.881, "v0": -0.893, "v1": -22.499, "v2": 36.024, "v3": -37.534, "v4": 24.232, "amplitude": 38.315, "phase_angle": 19.912, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.730, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 181.718, 111.443, 138.373 ], "x_axis": [ 0.771, -0.441, 0.460 ], "y_axis": [ -0.632, -0.618, 0.468 ], "z_axis": [ 0.078, -0.651, -0.755 ], "quaternion": [ 0.315, 0.887, -0.302, 0.152 ] } }, { "index": 1060, "index_chain": 1060, "chain_name": "A", "nt_resnum": 1084, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1084", "linked_nts": [ "///A/1083", "///A/1085" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor", "alpha": -178.839, "beta": -145.698, "gamma": 121.484, "delta": 78.494, "epsilon": -96.422, "zeta": -151.250, "epsilon_zeta": 54.828, "bb_type": "--", "chi": 179.618, "glyco_bond": "anti", "C5prime_xyz": [ -1.414, 8.349, 1.687 ], "P_xyz": [ 1.136, 8.710, 1.220 ], "form": ".", "ssZp": 4.681, "Dp": 4.794, "splay_angle": 45.871, "splay_distance": 6.695, "splay_ratio": 0.391, "d22": null, "d64": null, "eta": 148.956, "theta": 170.832, "eta_prime": 178.574, "theta_prime": 175.990, "eta_base": -88.550, "theta_base": 124.638, "v0": 4.730, "v1": -27.392, "v2": 38.529, "v3": -36.859, "v4": 20.214, "amplitude": 39.373, "phase_angle": 11.883, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.004, "origin": [ 183.396, 106.119, 139.643 ], "x_axis": [ -0.452, -0.638, 0.623 ], "y_axis": [ -0.885, 0.230, -0.405 ], "z_axis": [ 0.115, -0.734, -0.669 ], "quaternion": [ -0.166, -0.497, 0.767, -0.372 ] } }, { "index": 1061, "index_chain": 1061, "chain_name": "A", "nt_resnum": 1085, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1085", "linked_nts": [ "///A/1084", "///A/1086" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor", "alpha": -62.559, "beta": 136.928, "gamma": 27.880, "delta": 83.050, "epsilon": -153.026, "zeta": -80.017, "epsilon_zeta": -73.009, "bb_type": "BI", "chi": -105.253, "glyco_bond": "anti", "C5prime_xyz": [ -2.072, 7.824, -2.449 ], "P_xyz": [ 0.419, 7.611, -3.244 ], "form": ".", "ssZp": 1.580, "Dp": 4.584, "splay_angle": 34.627, "splay_distance": 5.687, "splay_ratio": 0.301, "d22": null, "d64": null, "eta": 151.672, "theta": -142.653, "eta_prime": 146.525, "theta_prime": -142.093, "eta_base": 103.468, "theta_base": -120.795, "v0": 4.131, "v1": -25.198, "v2": 35.517, "v3": -34.062, "v4": 18.918, "amplitude": 36.339, "phase_angle": 12.209, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.023, "filter_rmsd": 0.018, "frame": { "rmsd": 0.018, "origin": [ 185.151, 110.726, 135.113 ], "x_axis": [ -0.154, -0.481, 0.863 ], "y_axis": [ -0.407, -0.765, -0.499 ], "z_axis": [ 0.900, -0.428, -0.077 ], "quaternion": [ -0.027, 0.650, -0.342, 0.679 ] } }, { "index": 1062, "index_chain": 1062, "chain_name": "A", "nt_resnum": 1086, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1086", "linked_nts": [ "///A/1085", "///A/1087" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -50.408, "beta": 153.859, "gamma": 74.990, "delta": 82.822, "epsilon": -90.951, "zeta": -112.352, "epsilon_zeta": 21.402, "bb_type": "--", "chi": -121.296, "glyco_bond": "anti", "C5prime_xyz": [ -2.048, 8.411, -1.729 ], "P_xyz": [ -0.090, 8.264, -3.467 ], "form": ".", "ssZp": 1.454, "Dp": 4.477, "splay_angle": 52.309, "splay_distance": 8.496, "splay_ratio": 0.450, "d22": 4.562, "d64": 5.200, "eta": -155.170, "theta": -129.776, "eta_prime": -144.914, "theta_prime": -119.161, "eta_base": -124.632, "theta_base": -82.893, "v0": -3.054, "v1": -18.940, "v2": 32.403, "v3": -35.026, "v4": 24.073, "amplitude": 35.314, "phase_angle": 23.427, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.263, "filter_rmsd": 0.099, "frame": { "rmsd": 0.007, "origin": [ 187.651, 105.705, 136.055 ], "x_axis": [ -0.417, -0.745, 0.521 ], "y_axis": [ -0.209, -0.479, -0.852 ], "z_axis": [ 0.885, -0.464, 0.044 ], "quaternion": [ -0.192, 0.505, -0.473, 0.696 ] } }, { "index": 1063, "index_chain": 1063, "chain_name": "A", "nt_resnum": 1087, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1087", "linked_nts": [ "///A/1086", "///A/1088" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -35.602, "beta": 112.360, "gamma": 68.390, "delta": 77.504, "epsilon": -123.892, "zeta": -130.438, "epsilon_zeta": 6.546, "bb_type": "--", "chi": -163.171, "glyco_bond": "anti", "C5prime_xyz": [ -1.371, 8.672, 0.706 ], "P_xyz": [ 0.754, 8.411, -0.790 ], "form": ".", "ssZp": 4.446, "Dp": 4.801, "splay_angle": 42.741, "splay_distance": 6.431, "splay_ratio": 0.364, "d22": null, "d64": null, "eta": 164.537, "theta": 178.233, "eta_prime": -163.748, "theta_prime": 175.458, "eta_base": -119.532, "theta_base": 159.758, "v0": 4.575, "v1": -28.094, "v2": 39.832, "v3": -38.175, "v4": 21.125, "amplitude": 40.761, "phase_angle": 12.256, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.309, "filter_rmsd": 0.103, "frame": { "rmsd": 0.008, "origin": [ 185.976, 97.718, 133.692 ], "x_axis": [ -0.873, -0.220, -0.434 ], "y_axis": [ 0.318, 0.418, -0.851 ], "z_axis": [ 0.369, -0.881, -0.295 ], "quaternion": [ 0.250, 0.030, 0.804, -0.539 ] } }, { "index": 1064, "index_chain": 1064, "chain_name": "A", "nt_resnum": 1088, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1088", "linked_nts": [ "///A/1087", "///A/1089" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -75.019, "beta": 152.779, "gamma": 55.800, "delta": 82.009, "epsilon": -157.119, "zeta": -69.937, "epsilon_zeta": -87.182, "bb_type": "BI", "chi": -160.117, "glyco_bond": "anti", "C5prime_xyz": [ -1.222, 8.671, 0.570 ], "P_xyz": [ 1.367, 8.715, 0.181 ], "form": "A", "ssZp": 4.448, "Dp": 4.611, "splay_angle": 23.816, "splay_distance": 3.690, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 162.437, "theta": -142.556, "eta_prime": 157.246, "theta_prime": -146.858, "eta_base": 147.044, "theta_base": -123.149, "v0": 5.514, "v1": -27.485, "v2": 37.776, "v3": -35.575, "v4": 18.977, "amplitude": 38.420, "phase_angle": 10.503, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.565, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 191.288, 94.516, 135.392 ], "x_axis": [ -0.965, 0.218, -0.145 ], "y_axis": [ 0.209, 0.307, -0.928 ], "z_axis": [ -0.158, -0.926, -0.342 ], "quaternion": [ -0.004, 0.132, 0.808, -0.574 ] } }, { "index": 1065, "index_chain": 1065, "chain_name": "A", "nt_resnum": 1089, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1089", "linked_nts": [ "///A/1088", "///A/1090" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack", "alpha": -62.692, "beta": 167.449, "gamma": 59.766, "delta": 81.156, "epsilon": -120.477, "zeta": -76.950, "epsilon_zeta": -43.527, "bb_type": "--", "chi": -170.199, "glyco_bond": "anti", "C5prime_xyz": [ -1.353, 8.632, 1.162 ], "P_xyz": [ 1.244, 8.881, 1.421 ], "form": ".", "ssZp": 4.544, "Dp": 4.721, "splay_angle": 37.990, "splay_distance": 5.810, "splay_ratio": 0.326, "d22": 3.375, "d64": 3.814, "eta": 177.901, "theta": -117.232, "eta_prime": -169.967, "theta_prime": -108.861, "eta_base": -129.457, "theta_base": -55.887, "v0": 3.152, "v1": -25.217, "v2": 36.585, "v3": -35.734, "v4": 20.530, "amplitude": 37.691, "phase_angle": 13.915, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.887, "filter_rmsd": 0.067, "frame": { "rmsd": 0.008, "origin": [ 189.599, 91.237, 135.265 ], "x_axis": [ -0.686, 0.413, -0.600 ], "y_axis": [ 0.703, 0.164, -0.692 ], "z_axis": [ -0.187, -0.896, -0.402 ], "quaternion": [ 0.137, 0.372, 0.750, -0.529 ] } }, { "index": 1066, "index_chain": 1066, "chain_name": "A", "nt_resnum": 1090, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1090", "linked_nts": [ "///A/1089", "///A/1091" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -33.020, "beta": 144.827, "gamma": 44.018, "delta": 82.062, "epsilon": 167.473, "zeta": -81.348, "epsilon_zeta": -111.179, "bb_type": "BI", "chi": -164.476, "glyco_bond": "anti", "C5prime_xyz": [ -1.456, 8.680, 0.811 ], "P_xyz": [ 1.173, 8.696, 0.926 ], "form": ".", "ssZp": 4.183, "Dp": 4.188, "splay_angle": 99.477, "splay_distance": 15.109, "splay_ratio": 0.767, "d22": 11.129, "d64": 14.125, "eta": 155.921, "theta": -166.179, "eta_prime": -163.416, "theta_prime": -179.378, "eta_base": -79.819, "theta_base": 156.546, "v0": 1.445, "v1": -22.802, "v2": 34.381, "v3": -34.433, "v4": 20.840, "amplitude": 35.828, "phase_angle": 16.341, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.291, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 187.781, 90.695, 129.774 ], "x_axis": [ 0.367, 0.397, -0.841 ], "y_axis": [ 0.902, -0.374, 0.217 ], "z_axis": [ -0.229, -0.838, -0.495 ], "quaternion": [ 0.353, 0.748, 0.434, -0.358 ] } }, { "index": 1067, "index_chain": 1067, "chain_name": "A", "nt_resnum": 1091, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1091", "linked_nts": [ "///A/1090", "///A/1092" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,splayed-apart", "alpha": 160.626, "beta": 77.431, "gamma": -138.073, "delta": 146.440, "epsilon": -73.243, "zeta": 95.704, "epsilon_zeta": 191.053, "bb_type": "--", "chi": -120.189, "glyco_bond": "anti", "C5prime_xyz": [ -1.837, 8.488, -1.201 ], "P_xyz": [ -3.208, 10.298, -2.499 ], "form": ".", "ssZp": 0.246, "Dp": 0.472, "splay_angle": 160.191, "splay_distance": 17.564, "splay_ratio": 0.985, "d22": null, "d64": null, "eta": -171.980, "theta": 73.931, "eta_prime": 157.817, "theta_prime": 67.331, "eta_base": 117.924, "theta_base": -179.661, "v0": -20.004, "v1": 34.276, "v2": -34.718, "v3": 24.081, "v4": -2.767, "amplitude": 35.844, "phase_angle": 165.601, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 183.269, 80.000, 139.446 ], "x_axis": [ -0.434, 0.831, 0.348 ], "y_axis": [ 0.443, 0.533, -0.721 ], "z_axis": [ -0.785, -0.159, -0.599 ], "quaternion": [ -0.354, 0.397, 0.801, -0.275 ] } }, { "index": 1068, "index_chain": 1068, "chain_name": "A", "nt_resnum": 1092, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1092", "linked_nts": [ "///A/1091", "///A/1093" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,BI,non-stack,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 91.299, "beta": 118.183, "gamma": 48.072, "delta": 145.587, "epsilon": -145.920, "zeta": -40.459, "epsilon_zeta": -105.462, "bb_type": "BI", "chi": -78.059, "glyco_bond": "--", "C5prime_xyz": [ -2.905, 7.215, -2.853 ], "P_xyz": [ -0.351, 6.917, -3.383 ], "form": ".", "ssZp": 1.325, "Dp": 1.836, "splay_angle": 99.421, "splay_distance": 14.463, "splay_ratio": 0.764, "d22": null, "d64": null, "eta": -40.763, "theta": 10.662, "eta_prime": -7.480, "theta_prime": -25.394, "eta_base": -116.389, "theta_base": 12.318, "v0": -21.708, "v1": 35.428, "v2": -34.920, "v3": 23.282, "v4": -1.176, "amplitude": 36.498, "phase_angle": 163.088, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.029, "filter_rmsd": 0.036, "frame": { "rmsd": 0.004, "origin": [ 192.411, 76.990, 124.754 ], "x_axis": [ -0.405, 0.740, -0.537 ], "y_axis": [ -0.029, 0.577, 0.817 ], "z_axis": [ 0.914, 0.346, -0.212 ], "quaternion": [ 0.490, 0.240, 0.740, 0.392 ] } }, { "index": 1069, "index_chain": 1069, "chain_name": "A", "nt_resnum": 1093, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1093", "linked_nts": [ "///A/1092", "///A/1094" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,ss-non-loop,cap-acceptor,phosphate,splayed-apart", "alpha": 164.116, "beta": -117.381, "gamma": 127.510, "delta": 82.011, "epsilon": -91.550, "zeta": -167.541, "epsilon_zeta": 75.991, "bb_type": "BII", "chi": -168.925, "glyco_bond": "anti", "C5prime_xyz": [ -1.913, 8.785, 0.983 ], "P_xyz": [ 0.649, 8.810, 0.476 ], "form": ".", "ssZp": 4.050, "Dp": 4.396, "splay_angle": 70.287, "splay_distance": 10.681, "splay_ratio": 0.577, "d22": null, "d64": null, "eta": 155.762, "theta": 140.373, "eta_prime": -154.089, "theta_prime": 141.058, "eta_base": -143.539, "theta_base": 147.088, "v0": -4.556, "v1": -17.651, "v2": 31.731, "v3": -35.268, "v4": 25.118, "amplitude": 35.256, "phase_angle": 25.838, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 187.532, 79.797, 138.077 ], "x_axis": [ -0.082, -0.995, -0.047 ], "y_axis": [ 0.876, -0.050, -0.480 ], "z_axis": [ 0.476, -0.081, 0.876 ], "quaternion": [ 0.660, -0.151, 0.198, -0.708 ] } }, { "index": 1070, "index_chain": 1070, "chain_name": "A", "nt_resnum": 1094, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1094", "linked_nts": [ "///A/1093", "///A/1095" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,phosphate", "alpha": -120.236, "beta": 119.781, "gamma": 78.629, "delta": 80.488, "epsilon": -153.811, "zeta": -35.006, "epsilon_zeta": -118.806, "bb_type": "BI", "chi": 172.307, "glyco_bond": "anti", "C5prime_xyz": [ -1.724, 8.203, 2.042 ], "P_xyz": [ 0.700, 8.657, 1.165 ], "form": ".", "ssZp": 4.513, "Dp": 4.629, "splay_angle": 34.291, "splay_distance": 5.199, "splay_ratio": 0.302, "d22": null, "d64": null, "eta": 150.488, "theta": -101.151, "eta_prime": 154.546, "theta_prime": -113.922, "eta_base": 156.585, "theta_base": -63.675, "v0": 3.154, "v1": -25.715, "v2": 37.198, "v3": -36.387, "v4": 20.946, "amplitude": 38.331, "phase_angle": 13.962, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 191.666, 89.447, 140.043 ], "x_axis": [ -0.695, -0.694, 0.188 ], "y_axis": [ 0.599, -0.703, -0.382 ], "z_axis": [ 0.398, -0.153, 0.905 ], "quaternion": [ -0.356, 0.161, -0.147, 0.909 ] } }, { "index": 1071, "index_chain": 1071, "chain_name": "A", "nt_resnum": 1095, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1095", "linked_nts": [ "///A/1094", "///A/1096" ], "nt_type": "RNA", "dbn": "{", "summary": "pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact", "alpha": -100.540, "beta": -154.150, "gamma": 52.319, "delta": 84.282, "epsilon": -99.381, "zeta": -100.653, "epsilon_zeta": 1.271, "bb_type": "--", "chi": -152.475, "glyco_bond": "anti", "C5prime_xyz": [ -1.162, 8.743, 0.099 ], "P_xyz": [ 1.320, 9.055, 0.911 ], "form": ".", "ssZp": 3.666, "Dp": 4.674, "splay_angle": 29.959, "splay_distance": 5.258, "splay_ratio": 0.260, "d22": null, "d64": null, "eta": 168.713, "theta": -102.805, "eta_prime": -167.743, "theta_prime": -115.669, "eta_base": -90.837, "theta_base": -97.514, "v0": 2.865, "v1": -23.479, "v2": 34.031, "v3": -33.307, "v4": 19.232, "amplitude": 35.079, "phase_angle": 14.042, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.086, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 190.770, 85.265, 142.999 ], "x_axis": [ 0.353, -0.877, -0.327 ], "y_axis": [ 0.871, 0.435, -0.227 ], "z_axis": [ 0.341, -0.204, 0.917 ], "quaternion": [ 0.822, -0.007, 0.203, -0.531 ] } }, { "index": 1072, "index_chain": 1072, "chain_name": "A", "nt_resnum": 1096, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1096", "linked_nts": [ "///A/1095", "///A/1097" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": 80.830, "beta": -140.905, "gamma": -140.078, "delta": 83.824, "epsilon": -101.020, "zeta": -38.274, "epsilon_zeta": -62.747, "bb_type": "--", "chi": 158.741, "glyco_bond": "anti", "C5prime_xyz": [ -1.700, 7.646, 2.702 ], "P_xyz": [ -0.595, 10.003, 2.880 ], "form": ".", "ssZp": 4.605, "Dp": 4.720, "splay_angle": 38.030, "splay_distance": 6.152, "splay_ratio": 0.334, "d22": null, "d64": null, "eta": 144.789, "theta": -131.375, "eta_prime": 156.328, "theta_prime": -112.502, "eta_base": -168.599, "theta_base": -51.335, "v0": 5.264, "v1": -25.607, "v2": 35.157, "v3": -33.103, "v4": 17.589, "amplitude": 35.742, "phase_angle": 10.380, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.043, "frame": { "rmsd": 0.012, "origin": [ 192.811, 81.908, 146.495 ], "x_axis": [ -0.118, -0.152, -0.981 ], "y_axis": [ 0.334, 0.924, -0.184 ], "z_axis": [ 0.935, -0.350, -0.059 ], "quaternion": [ 0.661, 0.063, 0.725, -0.184 ] } }, { "index": 1073, "index_chain": 1073, "chain_name": "A", "nt_resnum": 1097, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1097", "linked_nts": [ "///A/1096", "///A/1098" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,ss-non-loop", "alpha": -90.595, "beta": 122.204, "gamma": 133.812, "delta": 140.031, "epsilon": -91.669, "zeta": -39.334, "epsilon_zeta": -52.335, "bb_type": "--", "chi": -171.516, "glyco_bond": "anti", "C5prime_xyz": [ -2.356, 8.452, 1.427 ], "P_xyz": [ -0.287, 9.894, 0.734 ], "form": ".", "ssZp": 0.774, "Dp": 0.907, "splay_angle": 24.821, "splay_distance": 4.306, "splay_ratio": 0.244, "d22": null, "d64": null, "eta": -131.850, "theta": -63.880, "eta_prime": -110.710, "theta_prime": -70.793, "eta_base": -36.029, "theta_base": -58.237, "v0": -24.258, "v1": 35.482, "v2": -32.585, "v3": 19.475, "v4": 2.768, "amplitude": 35.459, "phase_angle": 156.776, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.006, "origin": [ 195.739, 82.233, 141.094 ], "x_axis": [ 0.387, 0.727, -0.567 ], "y_axis": [ 0.331, 0.464, 0.821 ], "z_axis": [ 0.861, -0.506, -0.061 ], "quaternion": [ 0.669, 0.496, 0.534, 0.148 ] } }, { "index": 1074, "index_chain": 1074, "chain_name": "A", "nt_resnum": 1098, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1098", "linked_nts": [ "///A/1097", null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "break,~C3'-endo,non-stack,non-canonical,ss-non-loop", "alpha": 105.569, "beta": -155.602, "gamma": 152.860, "delta": 80.378, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -72.726, "glyco_bond": "--", "C5prime_xyz": [ -3.147, 6.537, -3.343 ], "P_xyz": [ -3.326, 4.703, -5.219 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 0.134, "v1": -22.647, "v2": 35.262, "v3": -36.132, "v4": 22.695, "amplitude": 37.156, "phase_angle": 18.374, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.009, "origin": [ 199.169, 81.785, 143.658 ], "x_axis": [ 0.197, 0.954, -0.225 ], "y_axis": [ 0.485, 0.105, 0.868 ], "z_axis": [ 0.852, -0.280, -0.442 ], "quaternion": [ 0.464, 0.619, 0.581, 0.253 ] } }, { "index": 1075, "index_chain": 1075, "chain_name": "A", "nt_resnum": 1153, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1153", "linked_nts": [ null, "///A/1154" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": null, "beta": 155.789, "gamma": 62.045, "delta": 80.115, "epsilon": -127.939, "zeta": -77.528, "epsilon_zeta": -50.411, "bb_type": "BI", "chi": -168.370, "glyco_bond": "anti", "C5prime_xyz": [ -1.391, 8.666, 1.002 ], "P_xyz": [ 1.192, 8.995, 0.694 ], "form": ".", "ssZp": 4.604, "Dp": 4.773, "splay_angle": 39.536, "splay_distance": 5.877, "splay_ratio": 0.339, "d22": null, "d64": null, "eta": null, "theta": -125.336, "eta_prime": null, "theta_prime": -118.986, "eta_base": null, "theta_base": -69.830, "v0": 3.502, "v1": -26.069, "v2": 37.481, "v3": -36.429, "v4": 20.782, "amplitude": 38.542, "phase_angle": 13.475, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 203.486, 80.988, 145.072 ], "x_axis": [ -0.092, 0.778, -0.622 ], "y_axis": [ 0.224, -0.593, -0.774 ], "z_axis": [ -0.970, -0.210, -0.120 ], "quaternion": [ -0.221, 0.637, 0.393, -0.625 ] } }, { "index": 1076, "index_chain": 1076, "chain_name": "A", "nt_resnum": 1154, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1154", "linked_nts": [ "///A/1153", "///A/1155" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,ss-non-loop,phosphate", "alpha": -38.384, "beta": 148.369, "gamma": 50.675, "delta": 84.508, "epsilon": -80.377, "zeta": -137.727, "epsilon_zeta": 57.350, "bb_type": "--", "chi": -164.494, "glyco_bond": "anti", "C5prime_xyz": [ -1.144, 8.538, 0.846 ], "P_xyz": [ 1.475, 8.311, 0.676 ], "form": ".", "ssZp": 4.021, "Dp": 4.682, "splay_angle": 37.520, "splay_distance": 5.942, "splay_ratio": 0.372, "d22": 5.621, "d64": 4.504, "eta": -171.523, "theta": -118.870, "eta_prime": -147.847, "theta_prime": -104.763, "eta_base": -82.570, "theta_base": -19.481, "v0": 6.958, "v1": -27.224, "v2": 36.077, "v3": -33.025, "v4": 16.506, "amplitude": 36.420, "phase_angle": 7.870, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.313, "filter_rmsd": 0.108, "frame": { "rmsd": 0.006, "origin": [ 200.163, 82.159, 140.368 ], "x_axis": [ 0.149, -0.202, -0.968 ], "y_axis": [ 0.136, -0.965, 0.222 ], "z_axis": [ -0.979, -0.165, -0.117 ], "quaternion": [ 0.130, 0.747, -0.022, -0.652 ] } }, { "index": 1077, "index_chain": 1077, "chain_name": "A", "nt_resnum": 1155, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1155", "linked_nts": [ "///A/1154", "///A/1156" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-pair-contact,ss-non-loop,cap-donor,cap-acceptor,phosphate", "alpha": -7.352, "beta": 97.693, "gamma": 51.204, "delta": 80.356, "epsilon": -150.857, "zeta": -122.275, "epsilon_zeta": -28.582, "bb_type": "--", "chi": -80.546, "glyco_bond": "--", "C5prime_xyz": [ -2.742, 6.833, -3.262 ], "P_xyz": [ -1.146, 4.882, -3.969 ], "form": ".", "ssZp": -0.586, "Dp": 4.639, "splay_angle": 32.225, "splay_distance": 5.394, "splay_ratio": 0.316, "d22": null, "d64": null, "eta": 159.084, "theta": -164.982, "eta_prime": -167.982, "theta_prime": -177.689, "eta_base": -76.536, "theta_base": -170.502, "v0": 2.996, "v1": -25.601, "v2": 37.354, "v3": -36.479, "v4": 21.150, "amplitude": 38.527, "phase_angle": 14.173, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 200.255, 76.335, 139.196 ], "x_axis": [ -0.071, -0.765, -0.640 ], "y_axis": [ -0.945, -0.153, 0.288 ], "z_axis": [ -0.318, 0.626, -0.712 ], "quaternion": [ -0.126, 0.670, -0.638, -0.358 ] } }, { "index": 1078, "index_chain": 1078, "chain_name": "A", "nt_resnum": 1156, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1156", "linked_nts": [ "///A/1155", "///A/1157" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop", "alpha": -39.110, "beta": 122.200, "gamma": 70.363, "delta": 84.798, "epsilon": 171.922, "zeta": -124.886, "epsilon_zeta": -63.191, "bb_type": "BI", "chi": -96.595, "glyco_bond": "anti", "C5prime_xyz": [ -1.963, 7.513, -2.802 ], "P_xyz": [ -0.604, 5.788, -4.234 ], "form": ".", "ssZp": 1.422, "Dp": 4.265, "splay_angle": 66.481, "splay_distance": 10.604, "splay_ratio": 0.549, "d22": null, "d64": null, "eta": 171.656, "theta": 177.403, "eta_prime": -167.709, "theta_prime": 156.541, "eta_base": -148.436, "theta_base": 157.782, "v0": 5.811, "v1": -25.359, "v2": 34.096, "v3": -31.710, "v4": 16.466, "amplitude": 34.541, "phase_angle": 9.206, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.120, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 195.239, 77.065, 137.352 ], "x_axis": [ -0.271, -0.779, -0.566 ], "y_axis": [ -0.923, 0.043, 0.382 ], "z_axis": [ -0.273, 0.626, -0.730 ], "quaternion": [ 0.102, -0.595, 0.715, 0.353 ] } }, { "index": 1079, "index_chain": 1079, "chain_name": "A", "nt_resnum": 1157, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1157", "linked_nts": [ "///A/1156", "///A/1158" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BI,non-pair-contact,ss-non-loop,phosphate", "alpha": 161.672, "beta": -164.141, "gamma": -172.872, "delta": 147.702, "epsilon": -173.039, "zeta": -91.568, "epsilon_zeta": -81.470, "bb_type": "BI", "chi": 129.403, "glyco_bond": "--", "C5prime_xyz": [ -3.629, 6.678, 2.983 ], "P_xyz": [ -2.350, 7.346, 5.190 ], "form": ".", "ssZp": -1.510, "Dp": 2.214, "splay_angle": 22.903, "splay_distance": 3.831, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": -161.820, "theta": -172.075, "eta_prime": -168.614, "theta_prime": -179.053, "eta_base": -164.454, "theta_base": -173.780, "v0": -25.597, "v1": 39.945, "v2": -38.072, "v3": 24.235, "v4": 0.627, "amplitude": 40.437, "phase_angle": 160.309, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.045, "frame": { "rmsd": 0.015, "origin": [ 190.226, 86.247, 135.621 ], "x_axis": [ 0.985, -0.130, 0.116 ], "y_axis": [ -0.145, -0.242, 0.959 ], "z_axis": [ -0.097, -0.962, -0.257 ], "quaternion": [ 0.610, 0.788, -0.087, 0.006 ] } }, { "index": 1080, "index_chain": 1080, "chain_name": "A", "nt_resnum": 1158, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1158", "linked_nts": [ "///A/1157", "///A/1159" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,phosphate", "alpha": -91.934, "beta": 124.549, "gamma": 131.691, "delta": 82.074, "epsilon": -174.518, "zeta": -88.977, "epsilon_zeta": -85.541, "bb_type": "BI", "chi": -141.410, "glyco_bond": "anti", "C5prime_xyz": [ -1.352, 8.716, -0.608 ], "P_xyz": [ -0.921, 9.275, -3.145 ], "form": "A", "ssZp": 3.874, "Dp": 4.423, "splay_angle": 21.443, "splay_distance": 3.468, "splay_ratio": 0.186, "d22": null, "d64": null, "eta": -157.850, "theta": -168.643, "eta_prime": -140.798, "theta_prime": -170.111, "eta_base": -119.768, "theta_base": -144.250, "v0": 3.217, "v1": -24.719, "v2": 35.617, "v3": -34.739, "v4": 19.901, "amplitude": 36.659, "phase_angle": 13.691, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 189.725, 89.842, 134.396 ], "x_axis": [ -0.701, 0.403, -0.588 ], "y_axis": [ -0.630, 0.038, 0.776 ], "z_axis": [ 0.335, 0.914, 0.227 ], "quaternion": [ 0.375, -0.092, 0.615, 0.687 ] } }, { "index": 1081, "index_chain": 1081, "chain_name": "A", "nt_resnum": 1159, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1159", "linked_nts": [ "///A/1158", "///A/1160" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 163.252, "beta": -130.987, "gamma": 164.617, "delta": 82.795, "epsilon": 179.605, "zeta": 57.213, "epsilon_zeta": 122.392, "bb_type": "--", "chi": -153.748, "glyco_bond": "anti", "C5prime_xyz": [ -1.581, 8.790, 0.131 ], "P_xyz": [ 0.064, 9.235, -1.860 ], "form": ".", "ssZp": 4.133, "Dp": 4.276, "splay_angle": 34.186, "splay_distance": 5.665, "splay_ratio": 0.297, "d22": null, "d64": null, "eta": 168.674, "theta": -63.045, "eta_prime": -164.432, "theta_prime": -124.059, "eta_base": -124.100, "theta_base": -128.809, "v0": -0.427, "v1": -20.990, "v2": 33.009, "v3": -34.228, "v4": 21.930, "amplitude": 34.976, "phase_angle": 19.309, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.294, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 190.151, 93.232, 133.801 ], "x_axis": [ -0.872, 0.450, -0.193 ], "y_axis": [ -0.157, 0.116, 0.981 ], "z_axis": [ 0.464, 0.885, -0.030 ], "quaternion": [ 0.231, 0.103, 0.710, 0.657 ] } }, { "index": 1082, "index_chain": 1082, "chain_name": "A", "nt_resnum": 1160, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1160", "linked_nts": [ "///A/1159", "///A/1161" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": 159.754, "beta": 79.968, "gamma": 141.902, "delta": 87.608, "epsilon": -175.852, "zeta": -67.816, "epsilon_zeta": -108.037, "bb_type": "BI", "chi": -172.915, "glyco_bond": "anti", "C5prime_xyz": [ -2.136, 8.771, 1.122 ], "P_xyz": [ -1.327, 9.820, -1.135 ], "form": ".", "ssZp": 3.506, "Dp": 3.794, "splay_angle": 17.305, "splay_distance": 2.822, "splay_ratio": 0.168, "d22": null, "d64": null, "eta": 129.931, "theta": 161.101, "eta_prime": 159.426, "theta_prime": -167.726, "eta_base": 179.525, "theta_base": -109.023, "v0": -10.991, "v1": -8.178, "v2": 22.729, "v3": -29.746, "v4": 25.709, "amplitude": 29.581, "phase_angle": 39.793, "puckering": "C4'-exo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 191.024, 98.627, 132.311 ], "x_axis": [ -0.871, -0.491, 0.009 ], "y_axis": [ 0.137, -0.225, 0.965 ], "z_axis": [ -0.471, 0.842, 0.263 ], "quaternion": [ -0.204, -0.150, 0.588, 0.768 ] } }, { "index": 1083, "index_chain": 1083, "chain_name": "A", "nt_resnum": 1161, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1161", "linked_nts": [ "///A/1160", "///A/1162" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -131.754, "beta": -113.458, "gamma": 64.244, "delta": 87.995, "epsilon": -165.040, "zeta": -86.697, "epsilon_zeta": -78.343, "bb_type": "BI", "chi": -98.532, "glyco_bond": "anti", "C5prime_xyz": [ -1.628, 7.380, -2.694 ], "P_xyz": [ 0.991, 7.322, -2.428 ], "form": ".", "ssZp": 1.321, "Dp": 4.517, "splay_angle": 20.898, "splay_distance": 3.539, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": 160.728, "theta": -154.574, "eta_prime": 171.262, "theta_prime": -160.322, "eta_base": -128.981, "theta_base": -177.418, "v0": 10.771, "v1": -28.782, "v2": 34.965, "v3": -29.648, "v4": 12.010, "amplitude": 34.972, "phase_angle": 1.121, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.035, "frame": { "rmsd": 0.019, "origin": [ 189.770, 100.539, 133.965 ], "x_axis": [ -0.440, -0.423, 0.793 ], "y_axis": [ 0.526, 0.594, 0.609 ], "z_axis": [ -0.728, 0.685, -0.038 ], "quaternion": [ 0.528, -0.036, -0.720, -0.449 ] } }, { "index": 1084, "index_chain": 1084, "chain_name": "A", "nt_resnum": 1162, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1162", "linked_nts": [ "///A/1161", "///A/1163" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -58.961, "beta": 155.086, "gamma": 53.119, "delta": 85.179, "epsilon": -145.750, "zeta": -122.572, "epsilon_zeta": -23.178, "bb_type": "--", "chi": -114.004, "glyco_bond": "anti", "C5prime_xyz": [ -1.891, 8.204, -2.074 ], "P_xyz": [ 0.455, 8.016, -3.237 ], "form": ".", "ssZp": 2.037, "Dp": 4.523, "splay_angle": 25.416, "splay_distance": 4.388, "splay_ratio": 0.239, "d22": 4.791, "d64": 3.969, "eta": 164.797, "theta": -169.725, "eta_prime": 171.634, "theta_prime": -170.167, "eta_base": 165.993, "theta_base": -153.603, "v0": 1.252, "v1": -21.712, "v2": 32.782, "v3": -32.902, "v4": 20.041, "amplitude": 34.199, "phase_angle": 16.548, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.598, "filter_rmsd": 0.061, "frame": { "rmsd": 0.006, "origin": [ 188.964, 103.905, 133.221 ], "x_axis": [ -0.337, -0.514, 0.789 ], "y_axis": [ 0.357, 0.706, 0.612 ], "z_axis": [ -0.872, 0.487, -0.054 ], "quaternion": [ 0.573, 0.054, -0.724, -0.380 ] } }, { "index": 1085, "index_chain": 1085, "chain_name": "A", "nt_resnum": 1163, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1163", "linked_nts": [ "///A/1162", "///A/1164" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": -25.743, "beta": 124.952, "gamma": 46.366, "delta": 82.078, "epsilon": -127.767, "zeta": -132.365, "epsilon_zeta": 4.599, "bb_type": "--", "chi": -126.067, "glyco_bond": "anti", "C5prime_xyz": [ -1.743, 8.506, -1.450 ], "P_xyz": [ 0.611, 7.936, -2.435 ], "form": ".", "ssZp": 2.535, "Dp": 4.650, "splay_angle": 38.975, "splay_distance": 6.348, "splay_ratio": 0.338, "d22": 3.805, "d64": 3.388, "eta": 177.200, "theta": -141.970, "eta_prime": -175.869, "theta_prime": -140.028, "eta_base": -156.612, "theta_base": -122.633, "v0": 0.488, "v1": -22.214, "v2": 34.341, "v3": -34.984, "v4": 21.755, "amplitude": 36.078, "phase_angle": 17.851, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.159, "filter_rmsd": 0.105, "frame": { "rmsd": 0.005, "origin": [ 186.138, 107.160, 134.040 ], "x_axis": [ -0.148, -0.347, 0.926 ], "y_axis": [ 0.376, 0.846, 0.378 ], "z_axis": [ -0.915, 0.404, 0.005 ], "quaternion": [ 0.653, -0.010, -0.705, -0.277 ] } }, { "index": 1086, "index_chain": 1086, "chain_name": "A", "nt_resnum": 1164, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1164", "linked_nts": [ "///A/1163", "///A/1165" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 18.742, "beta": 123.019, "gamma": 3.597, "delta": 80.830, "epsilon": -114.822, "zeta": -127.691, "epsilon_zeta": 12.869, "bb_type": "--", "chi": -153.106, "glyco_bond": "anti", "C5prime_xyz": [ -1.342, 8.798, 0.142 ], "P_xyz": [ 1.061, 8.745, 1.166 ], "form": ".", "ssZp": 3.906, "Dp": 4.698, "splay_angle": 21.317, "splay_distance": 3.532, "splay_ratio": 0.185, "d22": 3.836, "d64": 4.088, "eta": -179.474, "theta": -119.035, "eta_prime": -177.895, "theta_prime": -117.999, "eta_base": -160.730, "theta_base": -91.098, "v0": 1.545, "v1": -23.796, "v2": 35.783, "v3": -35.895, "v4": 21.633, "amplitude": 37.281, "phase_angle": 16.292, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 181.715, 110.240, 137.393 ], "x_axis": [ 0.774, -0.449, 0.446 ], "y_axis": [ 0.606, 0.730, -0.315 ], "z_axis": [ -0.184, 0.514, 0.838 ], "quaternion": [ 0.914, -0.227, -0.172, -0.289 ] } }, { "index": 1087, "index_chain": 1087, "chain_name": "A", "nt_resnum": 1165, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1165", "linked_nts": [ "///A/1164", "///A/1166" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 106.687, "beta": -91.710, "gamma": -172.170, "delta": 81.782, "epsilon": -175.256, "zeta": -76.651, "epsilon_zeta": -98.606, "bb_type": "BI", "chi": -171.876, "glyco_bond": "anti", "C5prime_xyz": [ -1.705, 8.653, 1.181 ], "P_xyz": [ -0.597, 9.494, -1.035 ], "form": ".", "ssZp": 4.238, "Dp": 4.290, "splay_angle": 38.273, "splay_distance": 5.592, "splay_ratio": 0.328, "d22": null, "d64": null, "eta": 169.037, "theta": 174.134, "eta_prime": -162.148, "theta_prime": -172.483, "eta_base": -116.241, "theta_base": -153.342, "v0": -2.212, "v1": -19.772, "v2": 32.971, "v3": -35.160, "v4": 23.569, "amplitude": 35.581, "phase_angle": 22.082, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 182.681, 110.739, 140.753 ], "x_axis": [ 0.965, -0.164, 0.204 ], "y_axis": [ 0.218, 0.935, -0.279 ], "z_axis": [ -0.145, 0.314, 0.938 ], "quaternion": [ 0.980, -0.151, -0.089, -0.097 ] } }, { "index": 1088, "index_chain": 1088, "chain_name": "A", "nt_resnum": 1166, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1166", "linked_nts": [ "///A/1165", "///A/1167" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -109.178, "beta": -100.819, "gamma": 53.703, "delta": 84.715, "epsilon": 174.660, "zeta": -83.076, "epsilon_zeta": -102.264, "bb_type": "BI", "chi": -135.258, "glyco_bond": "anti", "C5prime_xyz": [ -1.001, 8.525, -0.856 ], "P_xyz": [ 1.192, 8.355, 0.573 ], "form": ".", "ssZp": 3.620, "Dp": 4.306, "splay_angle": 16.951, "splay_distance": 2.719, "splay_ratio": 0.149, "d22": null, "d64": null, "eta": -170.597, "theta": -136.768, "eta_prime": 175.520, "theta_prime": -140.191, "eta_base": -173.120, "theta_base": -118.259, "v0": 7.146, "v1": -26.816, "v2": 35.279, "v3": -32.111, "v4": 15.784, "amplitude": 35.568, "phase_angle": 7.312, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.010, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 180.716, 111.121, 145.974 ], "x_axis": [ 0.906, 0.116, -0.408 ], "y_axis": [ -0.311, 0.835, -0.454 ], "z_axis": [ 0.288, 0.538, 0.792 ], "quaternion": [ 0.940, -0.264, 0.185, 0.114 ] } }, { "index": 1089, "index_chain": 1089, "chain_name": "A", "nt_resnum": 1167, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1167", "linked_nts": [ "///A/1166", "///A/1168" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": 175.711, "beta": -134.490, "gamma": 137.043, "delta": 81.363, "epsilon": -154.559, "zeta": -84.782, "epsilon_zeta": -69.777, "bb_type": "BI", "chi": -156.643, "glyco_bond": "anti", "C5prime_xyz": [ -1.149, 8.757, 0.354 ], "P_xyz": [ 1.097, 8.739, -0.983 ], "form": ".", "ssZp": 4.306, "Dp": 4.567, "splay_angle": 34.833, "splay_distance": 5.778, "splay_ratio": 0.304, "d22": null, "d64": null, "eta": 152.711, "theta": -121.506, "eta_prime": 172.685, "theta_prime": -138.439, "eta_base": -146.474, "theta_base": -127.631, "v0": 1.993, "v1": -23.521, "v2": 35.010, "v3": -34.836, "v4": 20.716, "amplitude": 36.345, "phase_angle": 15.577, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.011, "origin": [ 181.824, 112.501, 148.038 ], "x_axis": [ 0.640, 0.422, -0.642 ], "y_axis": [ -0.585, 0.810, -0.052 ], "z_axis": [ 0.498, 0.408, 0.765 ], "quaternion": [ 0.897, -0.128, 0.318, 0.281 ] } }, { "index": 1090, "index_chain": 1090, "chain_name": "A", "nt_resnum": 1168, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1168", "linked_nts": [ "///A/1167", "///A/1169" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 145.029, "beta": -148.259, "gamma": -172.197, "delta": 80.503, "epsilon": -117.518, "zeta": -78.591, "epsilon_zeta": -38.926, "bb_type": "--", "chi": 162.406, "glyco_bond": "anti", "C5prime_xyz": [ -1.498, 7.798, 2.542 ], "P_xyz": [ 0.154, 9.785, 2.156 ], "form": ".", "ssZp": 4.782, "Dp": 4.829, "splay_angle": 29.233, "splay_distance": 4.533, "splay_ratio": 0.262, "d22": null, "d64": null, "eta": 172.283, "theta": -153.278, "eta_prime": -172.875, "theta_prime": -146.200, "eta_base": -133.668, "theta_base": -106.924, "v0": 7.371, "v1": -29.406, "v2": 39.165, "v3": -35.925, "v4": 17.985, "amplitude": 39.559, "phase_angle": 8.090, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.652, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 186.458, 114.208, 151.037 ], "x_axis": [ 0.221, 0.648, -0.729 ], "y_axis": [ -0.937, 0.348, 0.026 ], "z_axis": [ 0.271, 0.677, 0.684 ], "quaternion": [ 0.751, -0.217, 0.333, 0.528 ] } }, { "index": 1091, "index_chain": 1091, "chain_name": "A", "nt_resnum": 1169, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1169", "linked_nts": [ "///A/1168", "///A/1170" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -51.941, "beta": 179.737, "gamma": 42.337, "delta": 81.949, "epsilon": -141.047, "zeta": -79.534, "epsilon_zeta": -61.513, "bb_type": "BI", "chi": -164.410, "glyco_bond": "anti", "C5prime_xyz": [ -1.291, 8.688, 0.816 ], "P_xyz": [ 1.180, 9.068, 1.586 ], "form": "A", "ssZp": 4.513, "Dp": 4.669, "splay_angle": 28.749, "splay_distance": 4.484, "splay_ratio": 0.248, "d22": 4.325, "d64": 4.282, "eta": 169.310, "theta": -147.287, "eta_prime": -174.924, "theta_prime": -142.915, "eta_base": -124.933, "theta_base": -114.839, "v0": 2.518, "v1": -24.226, "v2": 35.509, "v3": -35.056, "v4": 20.525, "amplitude": 36.724, "phase_angle": 14.782, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.396, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 189.533, 117.460, 151.753 ], "x_axis": [ -0.556, 0.657, -0.508 ], "y_axis": [ -0.802, -0.264, 0.536 ], "z_axis": [ 0.218, 0.706, 0.674 ], "quaternion": [ 0.462, -0.092, 0.393, 0.790 ] } }, { "index": 1092, "index_chain": 1092, "chain_name": "A", "nt_resnum": 1170, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1170", "linked_nts": [ "///A/1169", "///A/1171" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor", "alpha": -65.684, "beta": 175.481, "gamma": 50.396, "delta": 81.147, "epsilon": -143.018, "zeta": -62.752, "epsilon_zeta": -80.266, "bb_type": "BI", "chi": -174.620, "glyco_bond": "anti", "C5prime_xyz": [ -1.333, 8.537, 1.397 ], "P_xyz": [ 1.165, 8.792, 2.121 ], "form": ".", "ssZp": 4.674, "Dp": 4.681, "splay_angle": 29.208, "splay_distance": 4.359, "splay_ratio": 0.252, "d22": null, "d64": null, "eta": 166.297, "theta": -131.557, "eta_prime": 176.240, "theta_prime": -127.412, "eta_base": -145.405, "theta_base": -73.858, "v0": 3.182, "v1": -25.412, "v2": 36.706, "v3": -35.847, "v4": 20.600, "amplitude": 37.805, "phase_angle": 13.850, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.924, "filter_rmsd": 0.062, "frame": { "rmsd": 0.005, "origin": [ 190.826, 121.376, 153.513 ], "x_axis": [ -0.916, 0.080, -0.392 ], "y_axis": [ -0.334, -0.694, 0.638 ], "z_axis": [ -0.221, 0.716, 0.662 ], "quaternion": [ 0.114, -0.169, 0.374, 0.904 ] } }, { "index": 1093, "index_chain": 1093, "chain_name": "A", "nt_resnum": 1171, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1171", "linked_nts": [ "///A/1170", "///A/1172" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate", "alpha": -68.652, "beta": 168.659, "gamma": 55.856, "delta": 83.149, "epsilon": -145.085, "zeta": 69.212, "epsilon_zeta": 145.703, "bb_type": "--", "chi": -176.475, "glyco_bond": "anti", "C5prime_xyz": [ -1.200, 8.389, 1.492 ], "P_xyz": [ 1.398, 8.390, 1.845 ], "form": ".", "ssZp": 4.694, "Dp": 4.702, "splay_angle": 27.650, "splay_distance": 4.128, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 160.917, "theta": -2.208, "eta_prime": -175.262, "theta_prime": -53.215, "eta_base": -97.416, "theta_base": -88.143, "v0": 6.577, "v1": -27.496, "v2": 36.862, "v3": -34.087, "v4": 17.366, "amplitude": 37.292, "phase_angle": 8.710, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.924, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 187.348, 123.673, 154.789 ], "x_axis": [ -0.791, -0.546, 0.275 ], "y_axis": [ 0.569, -0.495, 0.657 ], "z_axis": [ -0.223, 0.676, 0.703 ], "quaternion": [ -0.323, 0.015, 0.385, 0.864 ] } }, { "index": 1094, "index_chain": 1094, "chain_name": "A", "nt_resnum": 1172, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1172", "linked_nts": [ "///A/1171", "///A/1173" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": 155.873, "beta": 129.785, "gamma": 61.688, "delta": 144.531, "epsilon": -111.961, "zeta": 74.110, "epsilon_zeta": 173.929, "bb_type": "--", "chi": -124.942, "glyco_bond": "anti", "C5prime_xyz": [ -2.284, 8.598, -0.979 ], "P_xyz": [ 0.328, 8.728, -0.963 ], "form": ".", "ssZp": 1.211, "Dp": 1.212, "splay_angle": 111.494, "splay_distance": 16.846, "splay_ratio": 0.827, "d22": null, "d64": null, "eta": 40.762, "theta": 112.542, "eta_prime": 120.190, "theta_prime": 51.646, "eta_base": 139.726, "theta_base": 23.510, "v0": -23.978, "v1": 37.071, "v2": -35.246, "v3": 22.337, "v4": 0.811, "amplitude": 37.512, "phase_angle": 159.981, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.580, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 184.488, 124.994, 157.456 ], "x_axis": [ 0.468, 0.033, -0.883 ], "y_axis": [ 0.883, -0.051, 0.466 ], "z_axis": [ -0.029, -0.998, -0.053 ], "quaternion": [ 0.584, 0.627, 0.365, -0.364 ] } }, { "index": 1095, "index_chain": 1095, "chain_name": "A", "nt_resnum": 1173, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1173", "linked_nts": [ "///A/1172", "///A/1174" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,splayed-apart", "alpha": 52.344, "beta": 152.663, "gamma": 177.683, "delta": 146.847, "epsilon": -161.554, "zeta": -136.165, "epsilon_zeta": -25.388, "bb_type": "--", "chi": -123.842, "glyco_bond": "anti", "C5prime_xyz": [ -1.963, 8.600, -0.997 ], "P_xyz": [ -0.998, 9.966, -3.023 ], "form": ".", "ssZp": 1.998, "Dp": 2.030, "splay_angle": 48.955, "splay_distance": 7.765, "splay_ratio": 0.414, "d22": null, "d64": null, "eta": 105.666, "theta": 147.911, "eta_prime": 100.659, "theta_prime": 157.617, "eta_base": 98.034, "theta_base": 137.902, "v0": -21.811, "v1": 36.157, "v2": -35.876, "v3": 24.201, "v4": -1.716, "amplitude": 37.357, "phase_angle": 163.813, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 197.060, 128.666, 168.050 ], "x_axis": [ 0.394, -0.184, -0.900 ], "y_axis": [ -0.899, -0.282, -0.336 ], "z_axis": [ -0.192, 0.942, -0.276 ], "quaternion": [ -0.457, 0.699, -0.387, -0.391 ] } }, { "index": 1096, "index_chain": 1096, "chain_name": "A", "nt_resnum": 1174, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1174", "linked_nts": [ "///A/1173", "///A/1175" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BII,non-pair-contact,junction-loop,A-minor,cap-donor,phosphate", "alpha": 153.686, "beta": 129.230, "gamma": -158.791, "delta": 148.421, "epsilon": -83.846, "zeta": 170.158, "epsilon_zeta": 105.996, "bb_type": "BII", "chi": -53.014, "glyco_bond": "--", "C5prime_xyz": [ -3.522, 6.127, -3.168 ], "P_xyz": [ -5.027, 5.809, -5.293 ], "form": ".", "ssZp": -0.154, "Dp": 0.554, "splay_angle": 34.813, "splay_distance": 5.813, "splay_ratio": 0.306, "d22": null, "d64": null, "eta": -144.563, "theta": 149.489, "eta_prime": -173.382, "theta_prime": 154.324, "eta_base": 161.440, "theta_base": -135.733, "v0": -20.934, "v1": 36.044, "v2": -36.635, "v3": 25.386, "v4": -2.978, "amplitude": 37.797, "phase_angle": 165.760, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.005, "origin": [ 195.672, 131.104, 175.291 ], "x_axis": [ 0.724, 0.621, -0.299 ], "y_axis": [ -0.689, 0.660, -0.298 ], "z_axis": [ 0.013, 0.422, 0.906 ], "quaternion": [ 0.907, -0.199, 0.086, 0.361 ] } }, { "index": 1097, "index_chain": 1097, "chain_name": "A", "nt_resnum": 1175, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1175", "linked_nts": [ "///A/1174", "///A/1176" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,junction-loop,A-minor,cap-acceptor,splayed-apart", "alpha": 54.572, "beta": -110.297, "gamma": -174.182, "delta": 81.680, "epsilon": -124.440, "zeta": 169.257, "epsilon_zeta": 66.303, "bb_type": "BII", "chi": -120.074, "glyco_bond": "anti", "C5prime_xyz": [ -1.701, 8.334, -1.750 ], "P_xyz": [ -1.671, 7.620, -4.264 ], "form": ".", "ssZp": 2.095, "Dp": 4.712, "splay_angle": 148.093, "splay_distance": 18.458, "splay_ratio": 0.962, "d22": null, "d64": null, "eta": 157.459, "theta": 110.954, "eta_prime": 165.604, "theta_prime": 91.919, "eta_base": -123.161, "theta_base": -125.814, "v0": 2.533, "v1": -24.410, "v2": 35.764, "v3": -35.297, "v4": 20.674, "amplitude": 36.986, "phase_angle": 14.774, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "4n", "suiteness": 0.010, "filter_rmsd": 0.037, "frame": { "rmsd": 0.006, "origin": [ 193.692, 136.505, 176.128 ], "x_axis": [ -0.125, 0.920, -0.373 ], "y_axis": [ -0.978, -0.051, 0.200 ], "z_axis": [ 0.165, 0.390, 0.906 ], "quaternion": [ 0.658, -0.072, 0.204, 0.721 ] } }, { "index": 1098, "index_chain": 1098, "chain_name": "A", "nt_resnum": 1176, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1176", "linked_nts": [ "///A/1175", "///A/1177" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,junction-loop,cap-acceptor,splayed-apart", "alpha": 53.794, "beta": 168.819, "gamma": 66.040, "delta": 147.894, "epsilon": -114.797, "zeta": -80.676, "epsilon_zeta": -34.121, "bb_type": "--", "chi": -113.968, "glyco_bond": "anti", "C5prime_xyz": [ -2.255, 8.406, -1.504 ], "P_xyz": [ 0.265, 9.144, -1.544 ], "form": ".", "ssZp": 1.255, "Dp": 1.236, "splay_angle": 59.557, "splay_distance": 9.369, "splay_ratio": 0.500, "d22": null, "d64": null, "eta": -24.550, "theta": -42.069, "eta_prime": -6.814, "theta_prime": -112.547, "eta_base": -162.458, "theta_base": -150.241, "v0": -23.256, "v1": 37.628, "v2": -36.787, "v3": 24.292, "v4": -0.847, "amplitude": 38.577, "phase_angle": 162.478, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "7p", "suiteness": 0.010, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 177.541, 139.759, 184.450 ], "x_axis": [ 0.074, 0.725, -0.685 ], "y_axis": [ 0.667, -0.546, -0.507 ], "z_axis": [ -0.741, -0.420, -0.524 ], "quaternion": [ -0.030, 0.732, 0.476, -0.487 ] } }, { "index": 1099, "index_chain": 1099, "chain_name": "A", "nt_resnum": 1177, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1177", "linked_nts": [ "///A/1176", "///A/1178" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,junction-loop,phosphate", "alpha": 165.743, "beta": 179.589, "gamma": 62.525, "delta": 145.064, "epsilon": -128.426, "zeta": 123.676, "epsilon_zeta": 107.898, "bb_type": "--", "chi": -99.354, "glyco_bond": "anti", "C5prime_xyz": [ -1.841, 8.016, -2.190 ], "P_xyz": [ 0.737, 8.416, -2.389 ], "form": ".", "ssZp": 1.171, "Dp": 1.669, "splay_angle": 54.869, "splay_distance": 9.418, "splay_ratio": 0.461, "d22": null, "d64": null, "eta": 33.251, "theta": 155.621, "eta_prime": 105.137, "theta_prime": 147.100, "eta_base": 110.377, "theta_base": 142.719, "v0": -17.386, "v1": 31.449, "v2": -32.753, "v3": 23.560, "v4": -4.064, "amplitude": 33.470, "phase_angle": 168.118, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2z", "suiteness": 0.681, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 172.776, 131.706, 184.915 ], "x_axis": [ 0.253, 0.767, 0.589 ], "y_axis": [ 0.927, -0.017, -0.375 ], "z_axis": [ -0.278, 0.641, -0.715 ], "quaternion": [ -0.361, 0.705, 0.601, 0.111 ] } }, { "index": 1100, "index_chain": 1100, "chain_name": "A", "nt_resnum": 1178, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1178", "linked_nts": [ "///A/1177", "///A/1179" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,junction-loop", "alpha": 26.450, "beta": 111.430, "gamma": -38.845, "delta": 153.391, "epsilon": -127.654, "zeta": -65.884, "epsilon_zeta": -61.771, "bb_type": "--", "chi": -117.337, "glyco_bond": "anti", "C5prime_xyz": [ -1.712, 8.369, -1.238 ], "P_xyz": [ -0.784, 9.968, 0.633 ], "form": ".", "ssZp": 1.357, "Dp": 1.405, "splay_angle": 40.016, "splay_distance": 6.666, "splay_ratio": 0.343, "d22": null, "d64": null, "eta": 173.864, "theta": -37.518, "eta_prime": 164.477, "theta_prime": -65.949, "eta_base": 160.146, "theta_base": -66.468, "v0": -17.050, "v1": 34.333, "v2": -37.538, "v3": 28.627, "v4": -7.462, "amplitude": 37.866, "phase_angle": 172.459, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.006, "origin": [ 170.485, 124.488, 179.316 ], "x_axis": [ -0.155, 0.502, 0.851 ], "y_axis": [ 0.920, 0.387, -0.060 ], "z_axis": [ -0.359, 0.774, -0.522 ], "quaternion": [ -0.421, 0.495, 0.718, 0.248 ] } }, { "index": 1101, "index_chain": 1101, "chain_name": "A", "nt_resnum": 1179, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1179", "linked_nts": [ "///A/1178", "///A/1180" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,junction-loop,splayed-apart", "alpha": 112.749, "beta": 177.645, "gamma": 175.897, "delta": 146.697, "epsilon": -79.947, "zeta": 83.481, "epsilon_zeta": 196.572, "bb_type": "--", "chi": -91.526, "glyco_bond": "anti", "C5prime_xyz": [ -2.557, 7.767, -2.428 ], "P_xyz": [ -1.801, 7.823, -4.940 ], "form": ".", "ssZp": 0.317, "Dp": 0.485, "splay_angle": 158.994, "splay_distance": 17.619, "splay_ratio": 0.984, "d22": null, "d64": null, "eta": 151.766, "theta": 81.504, "eta_prime": -176.433, "theta_prime": 71.094, "eta_base": -166.142, "theta_base": 127.216, "v0": -22.282, "v1": 36.328, "v2": -35.694, "v3": 23.749, "v4": -1.121, "amplitude": 37.340, "phase_angle": 162.927, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.006, "origin": [ 171.396, 130.757, 177.242 ], "x_axis": [ 0.191, -0.156, 0.969 ], "y_axis": [ 0.978, -0.052, -0.201 ], "z_axis": [ 0.081, 0.986, 0.143 ], "quaternion": [ 0.566, -0.524, -0.392, -0.501 ] } }, { "index": 1102, "index_chain": 1102, "chain_name": "A", "nt_resnum": 1180, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1180", "linked_nts": [ "///A/1179", "///A/1181" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,junction-loop,splayed-apart", "alpha": 58.530, "beta": 129.880, "gamma": 69.701, "delta": 148.693, "epsilon": -118.124, "zeta": 173.792, "epsilon_zeta": 68.084, "bb_type": "BII", "chi": -102.581, "glyco_bond": "anti", "C5prime_xyz": [ -1.991, 8.095, -1.988 ], "P_xyz": [ 0.470, 7.388, -2.533 ], "form": ".", "ssZp": 1.056, "Dp": 1.372, "splay_angle": 157.206, "splay_distance": 20.445, "splay_ratio": 0.980, "d22": 13.186, "d64": 16.606, "eta": -33.730, "theta": 165.048, "eta_prime": -6.783, "theta_prime": 148.490, "eta_base": -53.966, "theta_base": 156.434, "v0": -17.588, "v1": 32.749, "v2": -34.583, "v3": 25.319, "v4": -5.064, "amplitude": 35.186, "phase_angle": 169.381, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.192, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 181.346, 132.888, 162.858 ], "x_axis": [ 0.875, 0.135, 0.464 ], "y_axis": [ -0.350, -0.484, 0.802 ], "z_axis": [ 0.333, -0.864, -0.377 ], "quaternion": [ 0.504, 0.827, -0.065, 0.241 ] } }, { "index": 1103, "index_chain": 1103, "chain_name": "A", "nt_resnum": 1181, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1181", "linked_nts": [ "///A/1180", "///A/1182" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,cap-donor,splayed-apart", "alpha": -111.854, "beta": -156.053, "gamma": -174.335, "delta": 85.343, "epsilon": -90.433, "zeta": -47.147, "epsilon_zeta": -43.287, "bb_type": "--", "chi": -170.806, "glyco_bond": "anti", "C5prime_xyz": [ -1.591, 8.718, 1.118 ], "P_xyz": [ -0.218, 10.519, -0.204 ], "form": ".", "ssZp": 4.158, "Dp": 4.437, "splay_angle": 44.767, "splay_distance": 7.454, "splay_ratio": 0.381, "d22": null, "d64": null, "eta": -16.700, "theta": -75.091, "eta_prime": -54.828, "theta_prime": -109.199, "eta_base": -52.211, "theta_base": -145.536, "v0": -2.268, "v1": -19.067, "v2": 31.753, "v3": -33.898, "v4": 22.868, "amplitude": 34.306, "phase_angle": 22.243, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 164.947, 121.401, 166.996 ], "x_axis": [ 0.119, -0.204, 0.972 ], "y_axis": [ 0.838, 0.546, 0.012 ], "z_axis": [ -0.533, 0.812, 0.236 ], "quaternion": [ 0.689, -0.290, -0.546, -0.378 ] } }, { "index": 1104, "index_chain": 1104, "chain_name": "A", "nt_resnum": 1182, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1182", "linked_nts": [ "///A/1181", "///A/1183" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop", "alpha": 178.331, "beta": -178.596, "gamma": 25.595, "delta": 78.890, "epsilon": -155.480, "zeta": -73.481, "epsilon_zeta": -81.999, "bb_type": "BI", "chi": -173.664, "glyco_bond": "anti", "C5prime_xyz": [ -1.598, 8.687, 1.275 ], "P_xyz": [ 0.398, 9.474, 2.738 ], "form": "A", "ssZp": 4.533, "Dp": 4.539, "splay_angle": 21.254, "splay_distance": 3.388, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": 2.174, "theta": -161.533, "eta_prime": 45.927, "theta_prime": -153.804, "eta_base": 60.867, "theta_base": -127.568, "v0": -0.792, "v1": -22.225, "v2": 35.400, "v3": -36.902, "v4": 23.814, "amplitude": 37.631, "phase_angle": 19.827, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 160.206, 127.057, 168.043 ], "x_axis": [ -0.267, -0.161, -0.950 ], "y_axis": [ 0.780, 0.543, -0.311 ], "z_axis": [ 0.566, -0.824, -0.019 ], "quaternion": [ 0.561, 0.229, 0.676, -0.420 ] } }, { "index": 1105, "index_chain": 1105, "chain_name": "A", "nt_resnum": 1183, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1183", "linked_nts": [ "///A/1182", "///A/1184" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -68.331, "beta": 179.038, "gamma": 57.816, "delta": 82.635, "epsilon": -156.668, "zeta": -66.648, "epsilon_zeta": -90.020, "bb_type": "BI", "chi": -154.091, "glyco_bond": "anti", "C5prime_xyz": [ -1.346, 8.791, 0.154 ], "P_xyz": [ 1.229, 9.258, 0.184 ], "form": "A", "ssZp": 4.239, "Dp": 4.539, "splay_angle": 26.297, "splay_distance": 4.180, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 172.474, "theta": -144.429, "eta_prime": -175.969, "theta_prime": -143.361, "eta_base": -145.163, "theta_base": -111.886, "v0": 1.235, "v1": -23.151, "v2": 34.961, "v3": -35.197, "v4": 21.423, "amplitude": 36.496, "phase_angle": 16.677, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.924, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 160.140, 123.715, 168.594 ], "x_axis": [ 0.231, 0.011, -0.973 ], "y_axis": [ 0.886, 0.410, 0.216 ], "z_axis": [ 0.402, -0.912, 0.085 ], "quaternion": [ 0.657, 0.429, 0.523, -0.333 ] } }, { "index": 1106, "index_chain": 1106, "chain_name": "A", "nt_resnum": 1184, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1184", "linked_nts": [ "///A/1183", "///A/1185" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop", "alpha": -70.289, "beta": 169.046, "gamma": 67.387, "delta": 81.059, "epsilon": -137.595, "zeta": -30.768, "epsilon_zeta": -106.827, "bb_type": "--", "chi": -156.379, "glyco_bond": "anti", "C5prime_xyz": [ -1.276, 8.807, 0.292 ], "P_xyz": [ 1.274, 9.176, -0.166 ], "form": ".", "ssZp": 4.272, "Dp": 4.682, "splay_angle": 42.298, "splay_distance": 6.783, "splay_ratio": 0.361, "d22": null, "d64": null, "eta": 175.226, "theta": -102.263, "eta_prime": -168.639, "theta_prime": -99.059, "eta_base": -123.467, "theta_base": -57.563, "v0": 1.486, "v1": -24.086, "v2": 36.240, "v3": -36.368, "v4": 22.004, "amplitude": 37.774, "phase_angle": 16.387, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.645, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 161.511, 120.010, 167.227 ], "x_axis": [ 0.728, 0.204, -0.655 ], "y_axis": [ 0.601, 0.272, 0.752 ], "z_axis": [ 0.331, -0.941, 0.075 ], "quaternion": [ 0.720, 0.588, 0.342, -0.138 ] } }, { "index": 1107, "index_chain": 1107, "chain_name": "A", "nt_resnum": 1185, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1185", "linked_nts": [ "///A/1184", "///A/1186" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate", "alpha": -110.006, "beta": 148.000, "gamma": 112.531, "delta": 83.005, "epsilon": -152.163, "zeta": -67.142, "epsilon_zeta": -85.021, "bb_type": "BI", "chi": -167.069, "glyco_bond": "anti", "C5prime_xyz": [ -1.289, 8.566, 0.922 ], "P_xyz": [ 0.488, 9.546, -0.725 ], "form": "A", "ssZp": 4.606, "Dp": 4.662, "splay_angle": 25.973, "splay_distance": 4.233, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": 161.030, "theta": -152.105, "eta_prime": -154.954, "theta_prime": -157.241, "eta_base": -78.159, "theta_base": -138.991, "v0": 5.174, "v1": -26.747, "v2": 36.921, "v3": -34.927, "v4": 18.804, "amplitude": 37.595, "phase_angle": 10.865, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 168.174, 120.020, 165.957 ], "x_axis": [ 0.914, 0.213, 0.345 ], "y_axis": [ -0.264, -0.332, 0.905 ], "z_axis": [ 0.308, -0.919, -0.247 ], "quaternion": [ 0.578, 0.789, -0.016, 0.207 ] } }, { "index": 1108, "index_chain": 1108, "chain_name": "A", "nt_resnum": 1186, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1186", "linked_nts": [ "///A/1185", "///A/1187" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop,phosphate", "alpha": -65.369, "beta": 171.886, "gamma": 66.368, "delta": 78.285, "epsilon": -129.345, "zeta": -113.412, "epsilon_zeta": -15.932, "bb_type": "--", "chi": -165.952, "glyco_bond": "anti", "C5prime_xyz": [ -1.615, 8.859, 0.817 ], "P_xyz": [ 0.899, 9.571, 0.964 ], "form": ".", "ssZp": 4.406, "Dp": 4.617, "splay_angle": 39.517, "splay_distance": 6.483, "splay_ratio": 0.340, "d22": 6.769, "d64": 6.878, "eta": -178.689, "theta": -142.544, "eta_prime": -165.509, "theta_prime": -134.045, "eta_base": -133.294, "theta_base": -127.576, "v0": -2.794, "v1": -21.063, "v2": 35.527, "v3": -38.104, "v4": 25.795, "amplitude": 38.496, "phase_angle": 22.652, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.697, "filter_rmsd": 0.063, "frame": { "rmsd": 0.008, "origin": [ 170.796, 117.741, 163.539 ], "x_axis": [ 0.659, 0.032, 0.752 ], "y_axis": [ -0.677, -0.409, 0.611 ], "z_axis": [ 0.327, -0.912, -0.248 ], "quaternion": [ 0.501, 0.761, -0.212, 0.354 ] } }, { "index": 1109, "index_chain": 1109, "chain_name": "A", "nt_resnum": 1187, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1187", "linked_nts": [ "///A/1186", "///A/1188" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,internal-loop,phosphate", "alpha": 57.892, "beta": 162.553, "gamma": -24.012, "delta": 152.544, "epsilon": -91.573, "zeta": 29.871, "epsilon_zeta": 238.556, "bb_type": "--", "chi": -88.842, "glyco_bond": "anti", "C5prime_xyz": [ -2.028, 7.501, -2.532 ], "P_xyz": [ -0.326, 9.476, -2.748 ], "form": ".", "ssZp": -0.026, "Dp": 0.875, "splay_angle": 31.092, "splay_distance": 5.403, "splay_ratio": 0.300, "d22": null, "d64": null, "eta": -134.293, "theta": 75.406, "eta_prime": -124.183, "theta_prime": 78.099, "eta_base": -129.128, "theta_base": 108.710, "v0": -14.043, "v1": 31.202, "v2": -35.468, "v3": 28.297, "v4": -9.180, "amplitude": 35.558, "phase_angle": 175.929, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 174.173, 112.663, 161.341 ], "x_axis": [ 0.354, 0.115, 0.928 ], "y_axis": [ -0.803, -0.471, 0.364 ], "z_axis": [ 0.479, -0.874, -0.074 ], "quaternion": [ 0.449, 0.689, -0.250, 0.511 ] } }, { "index": 1110, "index_chain": 1110, "chain_name": "A", "nt_resnum": 1188, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1188", "linked_nts": [ "///A/1187", "///A/1189" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,internal-loop,splayed-apart", "alpha": 140.626, "beta": -132.305, "gamma": 157.937, "delta": 152.404, "epsilon": -113.531, "zeta": -168.540, "epsilon_zeta": 55.010, "bb_type": "BII", "chi": -99.065, "glyco_bond": "anti", "C5prime_xyz": [ -1.899, 7.884, -2.109 ], "P_xyz": [ 0.100, 6.898, -3.499 ], "form": ".", "ssZp": 0.802, "Dp": 1.201, "splay_angle": 86.769, "splay_distance": 13.125, "splay_ratio": 0.689, "d22": null, "d64": null, "eta": -173.850, "theta": -157.439, "eta_prime": -142.545, "theta_prime": 133.902, "eta_base": -135.628, "theta_base": 101.116, "v0": -15.645, "v1": 32.333, "v2": -35.687, "v3": 27.608, "v4": -7.714, "amplitude": 35.923, "phase_angle": 173.427, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.012, "origin": [ 170.157, 113.825, 157.919 ], "x_axis": [ 0.506, -0.589, -0.631 ], "y_axis": [ -0.832, -0.527, -0.175 ], "z_axis": [ -0.229, 0.613, -0.756 ], "quaternion": [ -0.236, 0.835, -0.425, -0.257 ] } }, { "index": 1111, "index_chain": 1111, "chain_name": "A", "nt_resnum": 1189, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1189", "linked_nts": [ "///A/1188", "///A/1190" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate,splayed-apart", "alpha": 70.650, "beta": -133.437, "gamma": 80.008, "delta": 149.463, "epsilon": -80.623, "zeta": -105.921, "epsilon_zeta": 25.298, "bb_type": "--", "chi": -139.492, "glyco_bond": "anti", "C5prime_xyz": [ -1.712, 8.650, -0.106 ], "P_xyz": [ 0.280, 8.661, 1.602 ], "form": ".", "ssZp": 0.410, "Dp": 0.462, "splay_angle": 118.209, "splay_distance": 16.583, "splay_ratio": 0.858, "d22": null, "d64": null, "eta": 43.534, "theta": -58.692, "eta_prime": 61.421, "theta_prime": -87.854, "eta_base": 53.955, "theta_base": -60.288, "v0": -19.863, "v1": 35.212, "v2": -36.265, "v3": 25.718, "v4": -3.896, "amplitude": 37.197, "phase_angle": 167.149, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4p", "suiteness": 0.166, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 161.426, 115.862, 167.505 ], "x_axis": [ -0.625, -0.713, 0.317 ], "y_axis": [ -0.275, -0.179, -0.945 ], "z_axis": [ 0.731, -0.678, -0.084 ], "quaternion": [ -0.167, 0.399, -0.619, 0.656 ] } }, { "index": 1112, "index_chain": 1112, "chain_name": "A", "nt_resnum": 1190, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1190", "linked_nts": [ "///A/1189", "///A/1191" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": -82.136, "beta": -162.637, "gamma": 54.689, "delta": 82.685, "epsilon": -155.043, "zeta": -66.959, "epsilon_zeta": -88.083, "bb_type": "BI", "chi": -168.567, "glyco_bond": "anti", "C5prime_xyz": [ -1.435, 8.647, 1.047 ], "P_xyz": [ 0.905, 8.994, 2.167 ], "form": "A", "ssZp": 4.449, "Dp": 4.508, "splay_angle": 21.721, "splay_distance": 3.488, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 163.032, "theta": -144.421, "eta_prime": -164.311, "theta_prime": -141.767, "eta_base": -146.243, "theta_base": -112.176, "v0": 0.372, "v1": -21.982, "v2": 34.004, "v3": -34.714, "v4": 21.680, "amplitude": 35.758, "phase_angle": 18.018, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.251, "filter_rmsd": 0.044, "frame": { "rmsd": 0.009, "origin": [ 168.283, 112.605, 152.762 ], "x_axis": [ -0.786, -0.610, 0.100 ], "y_axis": [ -0.356, 0.579, 0.734 ], "z_axis": [ -0.505, 0.541, -0.672 ], "quaternion": [ -0.174, -0.277, 0.871, 0.366 ] } }, { "index": 1113, "index_chain": 1113, "chain_name": "A", "nt_resnum": 1191, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1191", "linked_nts": [ "///A/1190", "///A/1192" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -69.370, "beta": 178.933, "gamma": 52.552, "delta": 81.294, "epsilon": -148.733, "zeta": -72.646, "epsilon_zeta": -76.087, "bb_type": "BI", "chi": -161.755, "glyco_bond": "anti", "C5prime_xyz": [ -1.369, 8.797, 0.617 ], "P_xyz": [ 1.161, 9.288, 1.089 ], "form": "A", "ssZp": 4.407, "Dp": 4.575, "splay_angle": 22.916, "splay_distance": 3.728, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 167.360, "theta": -146.141, "eta_prime": -179.082, "theta_prime": -143.064, "eta_base": -136.668, "theta_base": -125.852, "v0": 0.108, "v1": -22.362, "v2": 34.872, "v3": -35.746, "v4": 22.475, "amplitude": 36.756, "phase_angle": 18.424, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.946, "filter_rmsd": 0.062, "frame": { "rmsd": 0.006, "origin": [ 166.721, 112.877, 149.656 ], "x_axis": [ -0.825, -0.188, 0.533 ], "y_axis": [ 0.140, 0.846, 0.514 ], "z_axis": [ -0.548, 0.498, -0.672 ], "quaternion": [ -0.296, -0.013, 0.914, 0.277 ] } }, { "index": 1114, "index_chain": 1114, "chain_name": "A", "nt_resnum": 1192, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1192", "linked_nts": [ "///A/1191", "///A/1193" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.262, "beta": -173.363, "gamma": 46.374, "delta": 81.467, "epsilon": -170.953, "zeta": -80.486, "epsilon_zeta": -90.467, "bb_type": "BI", "chi": -140.576, "glyco_bond": "anti", "C5prime_xyz": [ -1.548, 8.743, -0.627 ], "P_xyz": [ 0.960, 9.493, -0.564 ], "form": "A", "ssZp": 3.824, "Dp": 4.417, "splay_angle": 17.792, "splay_distance": 3.091, "splay_ratio": 0.160, "d22": null, "d64": null, "eta": 166.970, "theta": -136.830, "eta_prime": 178.999, "theta_prime": -144.669, "eta_base": -153.846, "theta_base": -128.273, "v0": 0.973, "v1": -22.996, "v2": 35.060, "v3": -35.483, "v4": 21.754, "amplitude": 36.688, "phase_angle": 17.135, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.860, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 164.280, 113.138, 146.849 ], "x_axis": [ -0.567, 0.154, 0.809 ], "y_axis": [ 0.384, 0.919, 0.094 ], "z_axis": [ -0.729, 0.364, -0.580 ], "quaternion": [ -0.439, 0.154, 0.876, 0.131 ] } }, { "index": 1115, "index_chain": 1115, "chain_name": "A", "nt_resnum": 1193, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1193", "linked_nts": [ "///A/1192", "///A/1194" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 148.925, "beta": -150.584, "gamma": 177.562, "delta": 83.540, "epsilon": -89.865, "zeta": -37.078, "epsilon_zeta": -52.787, "bb_type": "--", "chi": -160.530, "glyco_bond": "anti", "C5prime_xyz": [ -1.370, 8.705, 0.573 ], "P_xyz": [ 0.070, 9.990, -1.189 ], "form": ".", "ssZp": 3.880, "Dp": 4.591, "splay_angle": 32.435, "splay_distance": 5.599, "splay_ratio": 0.281, "d22": null, "d64": null, "eta": 176.984, "theta": -119.769, "eta_prime": -175.142, "theta_prime": -135.104, "eta_base": -147.512, "theta_base": -115.320, "v0": 1.420, "v1": -22.576, "v2": 33.959, "v3": -34.095, "v4": 20.630, "amplitude": 35.396, "phase_angle": 16.384, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.816, "filter_rmsd": 0.099, "frame": { "rmsd": 0.008, "origin": [ 161.328, 113.023, 145.942 ], "x_axis": [ -0.321, 0.448, 0.835 ], "y_axis": [ 0.371, 0.870, -0.325 ], "z_axis": [ -0.872, 0.205, -0.445 ], "quaternion": [ 0.525, -0.252, -0.812, 0.037 ] } }, { "index": 1116, "index_chain": 1116, "chain_name": "A", "nt_resnum": 1194, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1194", "linked_nts": [ "///A/1193", "///A/1195" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -110.999, "beta": 72.833, "gamma": 160.430, "delta": 82.245, "epsilon": -117.417, "zeta": -82.077, "epsilon_zeta": -35.340, "bb_type": "--", "chi": 164.785, "glyco_bond": "anti", "C5prime_xyz": [ -1.450, 7.833, 2.458 ], "P_xyz": [ -1.314, 10.100, 1.161 ], "form": "A", "ssZp": 4.719, "Dp": 4.780, "splay_angle": 24.869, "splay_distance": 3.978, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 159.101, "theta": 171.397, "eta_prime": 170.235, "theta_prime": -171.195, "eta_base": -153.214, "theta_base": -137.893, "v0": 6.110, "v1": -26.905, "v2": 36.422, "v3": -33.946, "v4": 17.578, "amplitude": 36.915, "phase_angle": 9.376, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.044, "frame": { "rmsd": 0.012, "origin": [ 156.281, 115.400, 146.412 ], "x_axis": [ 0.409, 0.451, 0.793 ], "y_axis": [ 0.684, 0.423, -0.594 ], "z_axis": [ -0.603, 0.786, -0.135 ], "quaternion": [ 0.651, -0.530, -0.536, -0.090 ] } }, { "index": 1117, "index_chain": 1117, "chain_name": "A", "nt_resnum": 1195, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1195", "linked_nts": [ "///A/1194", "///A/1196" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -54.228, "beta": 172.046, "gamma": 42.202, "delta": 78.575, "epsilon": -149.095, "zeta": -79.258, "epsilon_zeta": -69.837, "bb_type": "BI", "chi": -166.182, "glyco_bond": "anti", "C5prime_xyz": [ -1.535, 8.687, 0.858 ], "P_xyz": [ 0.940, 9.283, 1.426 ], "form": "A", "ssZp": 4.557, "Dp": 4.652, "splay_angle": 15.848, "splay_distance": 2.599, "splay_ratio": 0.144, "d22": 4.370, "d64": 4.456, "eta": 160.101, "theta": -155.535, "eta_prime": 176.395, "theta_prime": -153.560, "eta_base": -141.330, "theta_base": -135.098, "v0": 1.441, "v1": -24.949, "v2": 37.671, "v3": -37.868, "v4": 22.913, "amplitude": 39.293, "phase_angle": 16.522, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.396, "filter_rmsd": 0.097, "frame": { "rmsd": 0.009, "origin": [ 153.317, 117.375, 148.184 ], "x_axis": [ 0.764, 0.589, 0.263 ], "y_axis": [ 0.272, 0.075, -0.959 ], "z_axis": [ -0.584, 0.805, -0.103 ], "quaternion": [ 0.659, -0.669, -0.322, 0.120 ] } }, { "index": 1118, "index_chain": 1118, "chain_name": "A", "nt_resnum": 1196, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1196", "linked_nts": [ "///A/1195", "///A/1197" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,junction-loop", "alpha": -65.014, "beta": 155.886, "gamma": 69.525, "delta": 80.700, "epsilon": -163.868, "zeta": -73.818, "epsilon_zeta": -90.051, "bb_type": "BI", "chi": -159.106, "glyco_bond": "anti", "C5prime_xyz": [ -1.610, 8.836, 0.436 ], "P_xyz": [ 0.877, 9.358, -0.186 ], "form": ".", "ssZp": 4.333, "Dp": 4.460, "splay_angle": 24.442, "splay_distance": 4.268, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 167.491, "theta": -127.981, "eta_prime": -175.944, "theta_prime": -144.580, "eta_base": -143.878, "theta_base": -130.953, "v0": -1.022, "v1": -21.609, "v2": 34.694, "v3": -36.233, "v4": 23.513, "amplitude": 36.954, "phase_angle": 20.140, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.518, "filter_rmsd": 0.059, "frame": { "rmsd": 0.008, "origin": [ 151.888, 118.929, 149.700 ], "x_axis": [ 0.745, 0.648, -0.160 ], "y_axis": [ -0.254, 0.053, -0.966 ], "z_axis": [ -0.617, 0.760, 0.203 ], "quaternion": [ 0.707, -0.610, -0.161, 0.319 ] } }, { "index": 1119, "index_chain": 1119, "chain_name": "A", "nt_resnum": 1197, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1197", "linked_nts": [ "///A/1196", "///A/1198" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 160.180, "beta": -169.129, "gamma": 171.355, "delta": 81.578, "epsilon": -120.042, "zeta": -89.798, "epsilon_zeta": -30.244, "bb_type": "--", "chi": 175.429, "glyco_bond": "anti", "C5prime_xyz": [ -1.558, 8.312, 1.923 ], "P_xyz": [ 0.189, 10.173, 1.380 ], "form": "A", "ssZp": 4.643, "Dp": 4.674, "splay_angle": 22.705, "splay_distance": 3.564, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 162.969, "theta": -162.575, "eta_prime": 173.511, "theta_prime": -155.037, "eta_base": -152.810, "theta_base": -112.348, "v0": 0.960, "v1": -22.909, "v2": 34.939, "v3": -35.343, "v4": 21.696, "amplitude": 36.564, "phase_angle": 17.143, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.858, "filter_rmsd": 0.046, "frame": { "rmsd": 0.014, "origin": [ 151.036, 122.153, 152.365 ], "x_axis": [ 0.717, 0.317, -0.621 ], "y_axis": [ -0.549, -0.291, -0.783 ], "z_axis": [ -0.430, 0.902, -0.035 ], "quaternion": [ 0.590, -0.715, 0.081, 0.367 ] } }, { "index": 1120, "index_chain": 1120, "chain_name": "A", "nt_resnum": 1198, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1198", "linked_nts": [ "///A/1197", "///A/1199" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -48.168, "beta": 148.501, "gamma": 52.041, "delta": 80.749, "epsilon": -159.686, "zeta": -74.592, "epsilon_zeta": -85.094, "bb_type": "BI", "chi": -171.170, "glyco_bond": "anti", "C5prime_xyz": [ -1.654, 8.728, 1.131 ], "P_xyz": [ 0.925, 9.057, 1.352 ], "form": "A", "ssZp": 4.427, "Dp": 4.456, "splay_angle": 25.039, "splay_distance": 4.004, "splay_ratio": 0.220, "d22": 4.888, "d64": 5.083, "eta": 160.179, "theta": -151.285, "eta_prime": -177.768, "theta_prime": -154.033, "eta_base": -120.306, "theta_base": -140.782, "v0": -2.492, "v1": -20.148, "v2": 33.757, "v3": -36.176, "v4": 24.372, "amplitude": 36.521, "phase_angle": 22.432, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.334, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 151.259, 125.708, 152.236 ], "x_axis": [ 0.198, 0.034, -0.980 ], "y_axis": [ -0.892, -0.408, -0.194 ], "z_axis": [ -0.407, 0.912, -0.051 ], "quaternion": [ -0.430, 0.644, -0.333, -0.538 ] } }, { "index": 1121, "index_chain": 1121, "chain_name": "A", "nt_resnum": 1199, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1199", "linked_nts": [ "///A/1198", "///A/1200" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,phosphate", "alpha": -68.693, "beta": 178.779, "gamma": 60.732, "delta": 84.534, "epsilon": -143.972, "zeta": -61.428, "epsilon_zeta": -82.544, "bb_type": "BI", "chi": -165.263, "glyco_bond": "anti", "C5prime_xyz": [ -1.453, 8.807, 0.805 ], "P_xyz": [ 1.042, 9.283, 1.417 ], "form": ".", "ssZp": 4.273, "Dp": 4.424, "splay_angle": 27.789, "splay_distance": 4.389, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": 178.977, "theta": -128.671, "eta_prime": -172.840, "theta_prime": -125.941, "eta_base": -149.034, "theta_base": -67.555, "v0": -3.071, "v1": -17.932, "v2": 30.768, "v3": -33.411, "v4": 23.037, "amplitude": 33.604, "phase_angle": 23.709, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.832, "filter_rmsd": 0.062, "frame": { "rmsd": 0.008, "origin": [ 151.863, 129.559, 153.151 ], "x_axis": [ -0.207, -0.177, -0.962 ], "y_axis": [ -0.879, -0.398, 0.262 ], "z_axis": [ -0.430, 0.900, -0.074 ], "quaternion": [ 0.283, -0.562, 0.470, 0.619 ] } }, { "index": 1122, "index_chain": 1122, "chain_name": "A", "nt_resnum": 1200, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1200", "linked_nts": [ "///A/1199", "///A/1201" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate", "alpha": -74.182, "beta": 165.969, "gamma": 58.788, "delta": 85.525, "epsilon": -85.261, "zeta": -141.134, "epsilon_zeta": 55.873, "bb_type": "--", "chi": -156.998, "glyco_bond": "anti", "C5prime_xyz": [ -1.187, 8.703, 0.368 ], "P_xyz": [ 1.420, 8.852, 0.172 ], "form": ".", "ssZp": 3.672, "Dp": 4.595, "splay_angle": 54.524, "splay_distance": 8.914, "splay_ratio": 0.458, "d22": null, "d64": null, "eta": 176.133, "theta": -167.723, "eta_prime": -163.600, "theta_prime": -154.120, "eta_base": -92.526, "theta_base": -158.022, "v0": 3.570, "v1": -24.160, "v2": 34.378, "v3": -33.273, "v4": 18.769, "amplitude": 35.274, "phase_angle": 12.941, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.817, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 148.827, 131.365, 150.546 ], "x_axis": [ -0.844, -0.427, -0.324 ], "y_axis": [ -0.368, 0.023, 0.929 ], "z_axis": [ -0.389, 0.904, -0.176 ], "quaternion": [ -0.023, -0.278, 0.715, 0.641 ] } }, { "index": 1123, "index_chain": 1123, "chain_name": "A", "nt_resnum": 1201, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1201", "linked_nts": [ "///A/1200", "///A/1202" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,splayed-apart", "alpha": -69.392, "beta": 156.970, "gamma": 44.874, "delta": 77.200, "epsilon": -155.097, "zeta": -81.523, "epsilon_zeta": -73.574, "bb_type": "BI", "chi": -131.847, "glyco_bond": "anti", "C5prime_xyz": [ -2.135, 8.685, -1.182 ], "P_xyz": [ 0.190, 9.424, -2.092 ], "form": ".", "ssZp": 3.278, "Dp": 4.505, "splay_angle": 103.948, "splay_distance": 14.635, "splay_ratio": 0.788, "d22": null, "d64": null, "eta": 170.602, "theta": -146.369, "eta_prime": 165.385, "theta_prime": 171.772, "eta_base": 156.931, "theta_base": 126.560, "v0": -5.399, "v1": -18.818, "v2": 34.422, "v3": -38.559, "v4": 27.742, "amplitude": 38.472, "phase_angle": 26.527, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.011, "origin": [ 149.179, 140.270, 150.742 ], "x_axis": [ -0.563, -0.637, -0.527 ], "y_axis": [ -0.457, -0.291, 0.840 ], "z_axis": [ -0.689, 0.714, -0.127 ], "quaternion": [ -0.068, -0.462, 0.591, 0.657 ] } }, { "index": 1124, "index_chain": 1124, "chain_name": "A", "nt_resnum": 1202, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1202", "linked_nts": [ "///A/1201", "///A/1203" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,internal-loop,splayed-apart", "alpha": 174.733, "beta": 160.240, "gamma": 54.724, "delta": 147.709, "epsilon": -96.863, "zeta": -67.022, "epsilon_zeta": -29.842, "bb_type": "--", "chi": -126.304, "glyco_bond": "anti", "C5prime_xyz": [ -1.715, 8.578, -0.858 ], "P_xyz": [ 0.820, 8.901, -0.266 ], "form": ".", "ssZp": 0.879, "Dp": 0.922, "splay_angle": 120.421, "splay_distance": 15.952, "splay_ratio": 0.870, "d22": null, "d64": null, "eta": 51.822, "theta": -33.519, "eta_prime": 77.463, "theta_prime": -62.598, "eta_base": 55.603, "theta_base": -19.141, "v0": -20.183, "v1": 34.636, "v2": -35.040, "v3": 24.276, "v4": -2.781, "amplitude": 36.183, "phase_angle": 165.564, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1z", "suiteness": 0.590, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 147.714, 148.723, 162.599 ], "x_axis": [ 0.290, -0.627, 0.723 ], "y_axis": [ -0.404, -0.765, -0.501 ], "z_axis": [ 0.868, -0.146, -0.475 ], "quaternion": [ -0.112, 0.795, -0.324, 0.500 ] } }, { "index": 1125, "index_chain": 1125, "chain_name": "A", "nt_resnum": 1203, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1203", "linked_nts": [ "///A/1202", "///A/1204" ], "nt_type": "RNA", "dbn": ")", "summary": "~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": -93.784, "beta": -149.022, "gamma": 57.100, "delta": 86.424, "epsilon": -109.708, "zeta": -87.620, "epsilon_zeta": -22.088, "bb_type": "--", "chi": 161.943, "glyco_bond": "--", "C5prime_xyz": [ -1.398, 7.831, 2.583 ], "P_xyz": [ 0.298, 6.913, 4.365 ], "form": "A", "ssZp": 4.532, "Dp": 4.651, "splay_angle": 22.117, "splay_distance": 3.475, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 159.391, "theta": -120.609, "eta_prime": -162.515, "theta_prime": -114.551, "eta_base": -157.054, "theta_base": -84.164, "v0": 4.610, "v1": -23.746, "v2": 32.813, "v3": -31.038, "v4": 16.736, "amplitude": 33.414, "phase_angle": 10.884, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.536, "filter_rmsd": 0.025, "frame": { "rmsd": 0.025, "origin": [ 142.930, 138.014, 151.787 ], "x_axis": [ -0.050, -0.209, 0.977 ], "y_axis": [ 0.587, 0.785, 0.198 ], "z_axis": [ -0.808, 0.583, 0.084 ], "quaternion": [ 0.674, -0.143, -0.662, -0.295 ] } }, { "index": 1126, "index_chain": 1126, "chain_name": "A", "nt_resnum": 1204, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1204", "linked_nts": [ "///A/1203", "///A/1205" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -56.499, "beta": 158.829, "gamma": 48.141, "delta": 82.452, "epsilon": -152.286, "zeta": -71.198, "epsilon_zeta": -81.088, "bb_type": "BI", "chi": -167.224, "glyco_bond": "anti", "C5prime_xyz": [ -1.416, 8.733, 0.930 ], "P_xyz": [ 1.146, 9.042, 1.313 ], "form": "A", "ssZp": 4.449, "Dp": 4.516, "splay_angle": 24.491, "splay_distance": 3.902, "splay_ratio": 0.213, "d22": 4.417, "d64": 4.612, "eta": 155.358, "theta": -143.613, "eta_prime": 176.965, "theta_prime": -144.292, "eta_base": -134.633, "theta_base": -120.141, "v0": -1.075, "v1": -20.778, "v2": 33.418, "v3": -35.008, "v4": 22.768, "amplitude": 35.635, "phase_angle": 20.313, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.240, "filter_rmsd": 0.059, "frame": { "rmsd": 0.009, "origin": [ 139.531, 138.486, 152.335 ], "x_axis": [ 0.338, 0.342, 0.877 ], "y_axis": [ 0.469, 0.747, -0.472 ], "z_axis": [ -0.816, 0.571, 0.092 ], "quaternion": [ 0.738, -0.353, -0.574, -0.043 ] } }, { "index": 1127, "index_chain": 1127, "chain_name": "A", "nt_resnum": 1205, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1205", "linked_nts": [ "///A/1204", "///A/1206" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate", "alpha": -69.004, "beta": 169.769, "gamma": 61.728, "delta": 81.199, "epsilon": -151.493, "zeta": -64.056, "epsilon_zeta": -87.437, "bb_type": "BI", "chi": -166.891, "glyco_bond": "anti", "C5prime_xyz": [ -1.530, 8.697, 0.909 ], "P_xyz": [ 1.024, 9.246, 1.058 ], "form": "A", "ssZp": 4.501, "Dp": 4.565, "splay_angle": 30.698, "splay_distance": 4.855, "splay_ratio": 0.267, "d22": null, "d64": null, "eta": 169.295, "theta": -138.959, "eta_prime": -175.252, "theta_prime": -138.762, "eta_base": -134.368, "theta_base": -108.839, "v0": -0.380, "v1": -21.920, "v2": 34.581, "v3": -35.744, "v4": 22.787, "amplitude": 36.610, "phase_angle": 19.166, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.864, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 136.112, 139.598, 153.852 ], "x_axis": [ 0.527, 0.687, 0.501 ], "y_axis": [ 0.239, 0.446, -0.863 ], "z_axis": [ -0.816, 0.574, 0.071 ], "quaternion": [ 0.715, -0.502, -0.460, 0.157 ] } }, { "index": 1128, "index_chain": 1128, "chain_name": "A", "nt_resnum": 1206, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1206", "linked_nts": [ "///A/1205", "///A/1207" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -68.767, "beta": -169.264, "gamma": 44.109, "delta": 83.567, "epsilon": -140.619, "zeta": -82.350, "epsilon_zeta": -58.269, "bb_type": "BI", "chi": -175.964, "glyco_bond": "anti", "C5prime_xyz": [ -1.643, 8.578, 1.455 ], "P_xyz": [ 0.455, 8.905, 2.996 ], "form": "A", "ssZp": 4.462, "Dp": 4.514, "splay_angle": 21.722, "splay_distance": 3.514, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 170.260, "theta": -146.703, "eta_prime": -177.980, "theta_prime": -141.421, "eta_base": -134.821, "theta_base": -114.736, "v0": -1.425, "v1": -19.740, "v2": 32.143, "v3": -33.903, "v4": 22.282, "amplitude": 34.417, "phase_angle": 20.948, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.751, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 133.198, 142.830, 156.007 ], "x_axis": [ 0.897, 0.422, -0.128 ], "y_axis": [ 0.004, -0.297, -0.955 ], "z_axis": [ -0.441, 0.856, -0.268 ], "quaternion": [ 0.577, -0.785, -0.136, 0.181 ] } }, { "index": 1129, "index_chain": 1129, "chain_name": "A", "nt_resnum": 1207, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1207", "linked_nts": [ "///A/1206", "///A/1208" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -48.649, "beta": 170.958, "gamma": 36.315, "delta": 81.145, "epsilon": -166.713, "zeta": -81.386, "epsilon_zeta": -85.328, "bb_type": "BI", "chi": -158.523, "glyco_bond": "anti", "C5prime_xyz": [ -1.399, 8.812, 0.439 ], "P_xyz": [ 1.069, 9.369, 1.083 ], "form": "A", "ssZp": 4.303, "Dp": 4.430, "splay_angle": 26.034, "splay_distance": 4.304, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": 164.524, "theta": -136.309, "eta_prime": 178.048, "theta_prime": -142.248, "eta_base": -144.204, "theta_base": -119.235, "v0": -0.439, "v1": -21.826, "v2": 34.565, "v3": -35.790, "v4": 22.838, "amplitude": 36.622, "phase_angle": 19.294, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.424, "filter_rmsd": 0.060, "frame": { "rmsd": 0.006, "origin": [ 132.060, 146.037, 156.880 ], "x_axis": [ 0.768, 0.158, -0.620 ], "y_axis": [ -0.506, -0.442, -0.740 ], "z_axis": [ -0.391, 0.883, -0.260 ], "quaternion": [ 0.516, -0.786, 0.111, 0.322 ] } }, { "index": 1130, "index_chain": 1130, "chain_name": "A", "nt_resnum": 1208, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1208", "linked_nts": [ "///A/1207", "///A/1209" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 163.729, "beta": -153.848, "gamma": 164.796, "delta": 82.787, "epsilon": -106.866, "zeta": -128.156, "epsilon_zeta": 21.290, "bb_type": "--", "chi": 167.465, "glyco_bond": "anti", "C5prime_xyz": [ -1.730, 8.131, 2.279 ], "P_xyz": [ 0.396, 9.602, 1.916 ], "form": "A", "ssZp": 4.548, "Dp": 4.628, "splay_angle": 21.524, "splay_distance": 3.518, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 170.398, "theta": -143.883, "eta_prime": -178.783, "theta_prime": -149.554, "eta_base": -141.012, "theta_base": -125.830, "v0": 1.208, "v1": -22.829, "v2": 34.534, "v3": -34.851, "v4": 21.227, "amplitude": 36.069, "phase_angle": 16.776, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.569, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 132.143, 150.327, 156.540 ], "x_axis": [ 0.533, -0.329, -0.780 ], "y_axis": [ -0.770, -0.571, -0.285 ], "z_axis": [ -0.351, 0.752, -0.557 ], "quaternion": [ -0.318, 0.816, -0.337, -0.347 ] } }, { "index": 1131, "index_chain": 1131, "chain_name": "A", "nt_resnum": 1209, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1209", "linked_nts": [ "///A/1208", "///A/1210" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": 113.767, "beta": -113.873, "gamma": -176.573, "delta": 82.247, "epsilon": -118.699, "zeta": -89.482, "epsilon_zeta": -29.217, "bb_type": "--", "chi": 165.896, "glyco_bond": "anti", "C5prime_xyz": [ -1.750, 8.092, 2.363 ], "P_xyz": [ 0.180, 9.495, 1.316 ], "form": "A", "ssZp": 4.543, "Dp": 4.644, "splay_angle": 25.276, "splay_distance": 4.019, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 156.777, "theta": -154.041, "eta_prime": 174.979, "theta_prime": -154.083, "eta_base": -144.275, "theta_base": -130.102, "v0": 0.859, "v1": -22.384, "v2": 34.250, "v3": -34.697, "v4": 21.342, "amplitude": 35.869, "phase_angle": 17.282, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 132.811, 153.516, 155.212 ], "x_axis": [ 0.091, -0.609, -0.788 ], "y_axis": [ -0.945, -0.302, 0.124 ], "z_axis": [ -0.314, 0.734, -0.603 ], "quaternion": [ -0.216, 0.706, -0.550, -0.390 ] } }, { "index": 1132, "index_chain": 1132, "chain_name": "A", "nt_resnum": 1210, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1210", "linked_nts": [ "///A/1209", "///A/1211" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -42.574, "beta": 168.203, "gamma": 29.578, "delta": 80.164, "epsilon": -143.955, "zeta": -88.167, "epsilon_zeta": -55.788, "bb_type": "BI", "chi": -168.035, "glyco_bond": "anti", "C5prime_xyz": [ -1.569, 8.634, 0.991 ], "P_xyz": [ 0.779, 9.160, 1.990 ], "form": "A", "ssZp": 4.549, "Dp": 4.640, "splay_angle": 23.281, "splay_distance": 3.714, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 161.785, "theta": -155.753, "eta_prime": 174.822, "theta_prime": -150.640, "eta_base": -146.639, "theta_base": -128.678, "v0": 0.604, "v1": -23.137, "v2": 35.607, "v3": -36.278, "v4": 22.505, "amplitude": 37.383, "phase_angle": 17.733, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.073, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 133.755, 156.423, 152.603 ], "x_axis": [ -0.437, -0.748, -0.499 ], "y_axis": [ -0.789, 0.053, 0.612 ], "z_axis": [ -0.431, 0.662, -0.614 ], "quaternion": [ 0.024, -0.530, 0.725, 0.439 ] } }, { "index": 1133, "index_chain": 1133, "chain_name": "A", "nt_resnum": 1211, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1211", "linked_nts": [ "///A/1210", "///A/1212" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -47.316, "beta": 154.518, "gamma": 55.175, "delta": 80.408, "epsilon": -150.643, "zeta": -78.269, "epsilon_zeta": -72.373, "bb_type": "BI", "chi": -168.086, "glyco_bond": "anti", "C5prime_xyz": [ -1.713, 8.795, 0.956 ], "P_xyz": [ 0.841, 9.281, 1.145 ], "form": "A", "ssZp": 4.427, "Dp": 4.495, "splay_angle": 23.507, "splay_distance": 3.726, "splay_ratio": 0.204, "d22": 4.644, "d64": 4.605, "eta": 173.403, "theta": -149.773, "eta_prime": -173.479, "theta_prime": -151.555, "eta_base": -142.058, "theta_base": -128.745, "v0": -2.889, "v1": -20.027, "v2": 33.998, "v3": -36.620, "v4": 24.909, "amplitude": 36.931, "phase_angle": 22.989, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.566, "filter_rmsd": 0.063, "frame": { "rmsd": 0.007, "origin": [ 133.815, 158.347, 149.427 ], "x_axis": [ -0.723, -0.674, -0.152 ], "y_axis": [ -0.526, 0.395, 0.753 ], "z_axis": [ -0.447, 0.625, -0.640 ], "quaternion": [ -0.089, -0.361, 0.831, 0.415 ] } }, { "index": 1134, "index_chain": 1134, "chain_name": "A", "nt_resnum": 1212, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1212", "linked_nts": [ "///A/1211", "///A/1213" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.588, "beta": 170.400, "gamma": 55.579, "delta": 79.572, "epsilon": -147.145, "zeta": -72.260, "epsilon_zeta": -74.886, "bb_type": "BI", "chi": -162.853, "glyco_bond": "anti", "C5prime_xyz": [ -1.427, 8.699, 0.716 ], "P_xyz": [ 1.145, 9.169, 0.794 ], "form": "A", "ssZp": 4.511, "Dp": 4.659, "splay_angle": 18.569, "splay_distance": 3.025, "splay_ratio": 0.166, "d22": null, "d64": null, "eta": 166.500, "theta": -146.139, "eta_prime": 177.427, "theta_prime": -148.524, "eta_base": -144.991, "theta_base": -128.739, "v0": 2.805, "v1": -25.785, "v2": 37.730, "v3": -37.104, "v4": 21.580, "amplitude": 38.976, "phase_angle": 14.530, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.952, "filter_rmsd": 0.104, "frame": { "rmsd": 0.007, "origin": [ 133.005, 159.770, 146.080 ], "x_axis": [ -0.898, -0.363, 0.250 ], "y_axis": [ -0.087, 0.702, 0.707 ], "z_axis": [ -0.432, 0.613, -0.662 ], "quaternion": [ -0.189, -0.124, 0.903, 0.366 ] } }, { "index": 1135, "index_chain": 1135, "chain_name": "A", "nt_resnum": 1213, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1213", "linked_nts": [ "///A/1212", "///A/1214" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -79.576, "beta": 163.401, "gamma": 67.962, "delta": 77.895, "epsilon": -149.808, "zeta": -120.395, "epsilon_zeta": -29.413, "bb_type": "BI", "chi": -174.565, "glyco_bond": "anti", "C5prime_xyz": [ -1.823, 8.620, 1.320 ], "P_xyz": [ 0.682, 9.358, 1.280 ], "form": "A", "ssZp": 4.638, "Dp": 4.641, "splay_angle": 23.947, "splay_distance": 3.633, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 157.077, "theta": -158.506, "eta_prime": 171.748, "theta_prime": -155.882, "eta_base": -149.290, "theta_base": -132.136, "v0": 0.237, "v1": -24.229, "v2": 37.707, "v3": -38.552, "v4": 24.121, "amplitude": 39.698, "phase_angle": 18.223, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.557, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 131.523, 159.903, 143.447 ], "x_axis": [ -0.709, -0.121, 0.695 ], "y_axis": [ 0.289, 0.849, 0.443 ], "z_axis": [ -0.644, 0.514, -0.567 ], "quaternion": [ -0.379, 0.047, 0.884, 0.271 ] } }, { "index": 1136, "index_chain": 1136, "chain_name": "A", "nt_resnum": 1214, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1214", "linked_nts": [ "///A/1213", "///A/1215" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 25.501, "beta": 126.173, "gamma": 5.323, "delta": 79.893, "epsilon": -179.476, "zeta": -82.425, "epsilon_zeta": -97.050, "bb_type": "BI", "chi": -158.819, "glyco_bond": "anti", "C5prime_xyz": [ -1.334, 8.763, 0.449 ], "P_xyz": [ 1.091, 8.745, 1.457 ], "form": "A", "ssZp": 4.298, "Dp": 4.374, "splay_angle": 18.836, "splay_distance": 2.887, "splay_ratio": 0.164, "d22": 4.215, "d64": 3.701, "eta": 173.621, "theta": -141.801, "eta_prime": -178.355, "theta_prime": -144.265, "eta_base": -145.206, "theta_base": -118.201, "v0": 1.406, "v1": -24.084, "v2": 36.372, "v3": -36.491, "v4": 22.159, "amplitude": 37.934, "phase_angle": 16.501, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 128.746, 159.900, 141.105 ], "x_axis": [ -0.324, 0.285, 0.902 ], "y_axis": [ 0.612, 0.790, -0.030 ], "z_axis": [ -0.722, 0.543, -0.430 ], "quaternion": [ 0.509, -0.281, -0.798, -0.161 ] } }, { "index": 1137, "index_chain": 1137, "chain_name": "A", "nt_resnum": 1215, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1215", "linked_nts": [ "///A/1214", "///A/1216" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -168.473, "beta": -139.430, "gamma": 123.967, "delta": 79.915, "epsilon": -99.499, "zeta": -97.967, "epsilon_zeta": -1.532, "bb_type": "--", "chi": -172.654, "glyco_bond": "anti", "C5prime_xyz": [ -1.362, 8.571, 1.229 ], "P_xyz": [ 1.160, 8.795, 0.574 ], "form": ".", "ssZp": 4.486, "Dp": 4.752, "splay_angle": 19.350, "splay_distance": 3.043, "splay_ratio": 0.169, "d22": 4.094, "d64": 3.506, "eta": 166.530, "theta": -136.186, "eta_prime": 174.825, "theta_prime": -138.396, "eta_base": -148.258, "theta_base": -98.842, "v0": 2.358, "v1": -24.863, "v2": 36.677, "v3": -36.343, "v4": 21.411, "amplitude": 37.995, "phase_angle": 15.136, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 126.046, 160.624, 140.381 ], "x_axis": [ 0.182, 0.592, 0.785 ], "y_axis": [ 0.580, 0.580, -0.572 ], "z_axis": [ -0.794, 0.559, -0.238 ], "quaternion": [ 0.617, -0.458, -0.639, 0.005 ] } }, { "index": 1138, "index_chain": 1138, "chain_name": "A", "nt_resnum": 1216, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1216", "linked_nts": [ "///A/1215", "///A/1217" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,cap-acceptor", "alpha": -71.860, "beta": 122.348, "gamma": 80.338, "delta": 80.928, "epsilon": -150.321, "zeta": -17.295, "epsilon_zeta": -133.026, "bb_type": "--", "chi": -167.650, "glyco_bond": "anti", "C5prime_xyz": [ -1.283, 8.650, 0.974 ], "P_xyz": [ 0.872, 8.756, -0.512 ], "form": ".", "ssZp": 4.612, "Dp": 4.673, "splay_angle": 52.303, "splay_distance": 7.840, "splay_ratio": 0.441, "d22": 4.299, "d64": 5.307, "eta": 145.452, "theta": -86.868, "eta_prime": 172.646, "theta_prime": -93.312, "eta_base": -123.640, "theta_base": -51.229, "v0": 4.246, "v1": -26.699, "v2": 37.734, "v3": -36.254, "v4": 20.205, "amplitude": 38.634, "phase_angle": 12.391, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.347, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 124.281, 163.036, 140.951 ], "x_axis": [ 0.556, 0.773, 0.305 ], "y_axis": [ 0.132, 0.280, -0.951 ], "z_axis": [ -0.821, 0.569, 0.054 ], "quaternion": [ 0.687, -0.553, -0.410, 0.233 ] } }, { "index": 1139, "index_chain": 1139, "chain_name": "A", "nt_resnum": 1217, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1217", "linked_nts": [ "///A/1216", "///A/1218" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor", "alpha": -102.714, "beta": 176.417, "gamma": 79.151, "delta": 82.374, "epsilon": -87.122, "zeta": 98.221, "epsilon_zeta": 174.657, "bb_type": "--", "chi": -145.068, "glyco_bond": "anti", "C5prime_xyz": [ -1.406, 8.698, -0.387 ], "P_xyz": [ 1.001, 8.944, -1.402 ], "form": ".", "ssZp": 3.085, "Dp": 4.689, "splay_angle": 81.865, "splay_distance": 12.654, "splay_ratio": 0.655, "d22": 7.736, "d64": 8.930, "eta": 174.942, "theta": 112.886, "eta_prime": -145.766, "theta_prime": 96.675, "eta_base": -69.811, "theta_base": 73.442, "v0": 3.656, "v1": -25.457, "v2": 36.356, "v3": -35.226, "v4": 19.897, "amplitude": 37.325, "phase_angle": 13.086, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 126.297, 170.039, 138.061 ], "x_axis": [ -0.042, 0.562, -0.826 ], "y_axis": [ -0.818, -0.494, -0.295 ], "z_axis": [ -0.574, 0.663, 0.481 ], "quaternion": [ 0.486, -0.493, 0.130, 0.710 ] } }, { "index": 1140, "index_chain": 1140, "chain_name": "A", "nt_resnum": 1218, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1218", "linked_nts": [ "///A/1217", "///A/1219" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop", "alpha": 115.782, "beta": -104.344, "gamma": 41.385, "delta": 80.266, "epsilon": -165.468, "zeta": -131.843, "epsilon_zeta": -33.625, "bb_type": "--", "chi": -168.728, "glyco_bond": "anti", "C5prime_xyz": [ -1.720, 8.759, 0.980 ], "P_xyz": [ -0.521, 8.826, 3.307 ], "form": ".", "ssZp": 4.300, "Dp": 4.372, "splay_angle": 63.086, "splay_distance": 10.006, "splay_ratio": 0.526, "d22": 8.140, "d64": 9.346, "eta": 88.780, "theta": 151.640, "eta_prime": 83.693, "theta_prime": 150.837, "eta_base": 96.470, "theta_base": 149.334, "v0": -3.028, "v1": -19.190, "v2": 32.713, "v3": -35.424, "v4": 24.270, "amplitude": 35.640, "phase_angle": 23.382, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.005, "origin": [ 121.695, 158.383, 139.817 ], "x_axis": [ 0.506, 0.071, -0.859 ], "y_axis": [ -0.687, 0.636, -0.352 ], "z_axis": [ 0.521, 0.769, 0.371 ], "quaternion": [ 0.793, -0.354, 0.435, 0.239 ] } }, { "index": 1141, "index_chain": 1141, "chain_name": "A", "nt_resnum": 1219, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1219", "linked_nts": [ "///A/1218", "///A/1220" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -1.269, "beta": 175.429, "gamma": -41.576, "delta": 80.719, "epsilon": -174.193, "zeta": 46.464, "epsilon_zeta": 139.343, "bb_type": "--", "chi": -177.774, "glyco_bond": "anti", "C5prime_xyz": [ -1.113, 8.362, 1.561 ], "P_xyz": [ 0.158, 9.498, 3.537 ], "form": ".", "ssZp": 4.503, "Dp": 4.527, "splay_angle": 95.237, "splay_distance": 12.504, "splay_ratio": 0.740, "d22": null, "d64": null, "eta": 149.125, "theta": -81.390, "eta_prime": 132.385, "theta_prime": -50.661, "eta_base": 124.595, "theta_base": -47.734, "v0": 7.744, "v1": -29.583, "v2": 39.272, "v3": -35.706, "v4": 17.581, "amplitude": 39.613, "phase_angle": 7.522, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 116.444, 157.273, 148.262 ], "x_axis": [ 0.231, -0.553, -0.801 ], "y_axis": [ -0.260, 0.758, -0.598 ], "z_axis": [ 0.938, 0.346, 0.032 ], "quaternion": [ 0.711, -0.332, 0.611, -0.103 ] } }, { "index": 1142, "index_chain": 1142, "chain_name": "A", "nt_resnum": 1220, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1220", "linked_nts": [ "///A/1219", "///A/1221" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,cap-acceptor,splayed-apart", "alpha": -91.197, "beta": 127.333, "gamma": 112.334, "delta": 90.336, "epsilon": -178.328, "zeta": -86.818, "epsilon_zeta": -91.510, "bb_type": "BI", "chi": -156.033, "glyco_bond": "anti", "C5prime_xyz": [ -0.680, 8.445, 0.355 ], "P_xyz": [ 0.757, 8.677, -1.868 ], "form": "A", "ssZp": 4.266, "Dp": 4.385, "splay_angle": 23.309, "splay_distance": 3.576, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": -168.001, "theta": -150.058, "eta_prime": -87.015, "theta_prime": -169.327, "eta_base": -14.442, "theta_base": -161.267, "v0": 11.374, "v1": -28.143, "v2": 33.352, "v3": -27.703, "v4": 10.442, "amplitude": 33.354, "phase_angle": 359.234, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 123.459, 164.214, 140.581 ], "x_axis": [ 0.639, 0.601, 0.481 ], "y_axis": [ -0.516, -0.129, 0.847 ], "z_axis": [ 0.571, -0.789, 0.228 ], "quaternion": [ 0.659, 0.621, 0.034, 0.424 ] } }, { "index": 1143, "index_chain": 1143, "chain_name": "A", "nt_resnum": 1221, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1221", "linked_nts": [ "///A/1220", "///A/1222" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -171.794, "beta": -138.329, "gamma": 129.039, "delta": 82.417, "epsilon": -92.758, "zeta": -129.771, "epsilon_zeta": 37.013, "bb_type": "--", "chi": 176.155, "glyco_bond": "anti", "C5prime_xyz": [ -1.533, 8.353, 1.884 ], "P_xyz": [ 1.065, 8.592, 1.739 ], "form": "A", "ssZp": 4.462, "Dp": 4.549, "splay_angle": 19.632, "splay_distance": 3.209, "splay_ratio": 0.171, "d22": null, "d64": null, "eta": 171.613, "theta": -125.360, "eta_prime": 178.439, "theta_prime": -137.924, "eta_base": -160.679, "theta_base": -118.707, "v0": 0.198, "v1": -21.829, "v2": 33.878, "v3": -34.745, "v4": 21.775, "amplitude": 35.683, "phase_angle": 18.306, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.043, "frame": { "rmsd": 0.018, "origin": [ 125.555, 161.397, 139.900 ], "x_axis": [ 0.130, 0.730, 0.671 ], "y_axis": [ -0.762, -0.359, 0.538 ], "z_axis": [ 0.634, -0.581, 0.510 ], "quaternion": [ 0.566, 0.495, -0.016, 0.659 ] } }, { "index": 1144, "index_chain": 1144, "chain_name": "A", "nt_resnum": 1222, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1222", "linked_nts": [ "///A/1221", "///A/1223" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 85.581, "beta": -104.896, "gamma": -167.183, "delta": 83.763, "epsilon": -167.289, "zeta": -67.311, "epsilon_zeta": -99.979, "bb_type": "BI", "chi": 164.147, "glyco_bond": "anti", "C5prime_xyz": [ -1.412, 7.849, 2.473 ], "P_xyz": [ 0.267, 9.432, 1.243 ], "form": "A", "ssZp": 4.080, "Dp": 4.490, "splay_angle": 27.418, "splay_distance": 4.005, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 151.036, "theta": -148.049, "eta_prime": 173.619, "theta_prime": -146.876, "eta_base": -138.392, "theta_base": -111.332, "v0": 5.110, "v1": -25.210, "v2": 34.718, "v3": -32.692, "v4": 17.450, "amplitude": 35.311, "phase_angle": 10.510, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.050, "frame": { "rmsd": 0.023, "origin": [ 128.449, 160.364, 140.822 ], "x_axis": [ -0.314, 0.545, 0.778 ], "y_axis": [ -0.712, -0.677, 0.187 ], "z_axis": [ 0.628, -0.495, 0.600 ], "quaternion": [ 0.390, 0.437, -0.096, 0.805 ] } }, { "index": 1145, "index_chain": 1145, "chain_name": "A", "nt_resnum": 1223, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1223", "linked_nts": [ "///A/1222", "///A/1224" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -144.720, "beta": -112.084, "gamma": 83.166, "delta": 80.258, "epsilon": -157.322, "zeta": -73.288, "epsilon_zeta": -84.034, "bb_type": "BI", "chi": -161.908, "glyco_bond": "anti", "C5prime_xyz": [ -1.683, 8.834, 0.606 ], "P_xyz": [ 0.783, 8.507, 1.417 ], "form": "A", "ssZp": 4.399, "Dp": 4.510, "splay_angle": 21.460, "splay_distance": 3.470, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": 157.812, "theta": -138.666, "eta_prime": 174.494, "theta_prime": -142.573, "eta_base": -135.509, "theta_base": -124.294, "v0": -2.065, "v1": -21.313, "v2": 35.286, "v3": -37.386, "v4": 24.889, "amplitude": 37.955, "phase_angle": 21.614, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.059, "frame": { "rmsd": 0.006, "origin": [ 131.340, 160.053, 143.576 ], "x_axis": [ -0.786, -0.089, 0.612 ], "y_axis": [ -0.308, -0.802, -0.512 ], "z_axis": [ 0.536, -0.591, 0.603 ], "quaternion": [ 0.061, 0.321, -0.309, 0.893 ] } }, { "index": 1146, "index_chain": 1146, "chain_name": "A", "nt_resnum": 1224, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1224", "linked_nts": [ "///A/1223", "///A/1225" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.720, "beta": 163.444, "gamma": 59.972, "delta": 79.789, "epsilon": -146.959, "zeta": -82.805, "epsilon_zeta": -64.155, "bb_type": "BI", "chi": -170.797, "glyco_bond": "anti", "C5prime_xyz": [ -1.816, 8.685, 1.113 ], "P_xyz": [ 0.700, 9.354, 1.384 ], "form": "A", "ssZp": 4.511, "Dp": 4.546, "splay_angle": 23.245, "splay_distance": 3.691, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 171.171, "theta": -151.121, "eta_prime": -175.823, "theta_prime": -149.689, "eta_base": -137.862, "theta_base": -122.120, "v0": -2.697, "v1": -20.244, "v2": 34.162, "v3": -36.685, "v4": 24.850, "amplitude": 37.032, "phase_angle": 22.703, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.862, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 133.147, 159.489, 146.485 ], "x_axis": [ -0.864, -0.422, 0.274 ], "y_axis": [ 0.092, -0.669, -0.738 ], "z_axis": [ 0.494, -0.612, 0.617 ], "quaternion": [ -0.145, 0.217, -0.380, 0.887 ] } }, { "index": 1147, "index_chain": 1147, "chain_name": "A", "nt_resnum": 1225, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1225", "linked_nts": [ "///A/1224", "///A/1226" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -51.592, "beta": 159.972, "gamma": 54.129, "delta": 84.178, "epsilon": -155.131, "zeta": -73.177, "epsilon_zeta": -81.954, "bb_type": "BI", "chi": -168.391, "glyco_bond": "anti", "C5prime_xyz": [ -1.809, 8.722, 0.997 ], "P_xyz": [ 0.722, 9.192, 1.445 ], "form": "A", "ssZp": 4.314, "Dp": 4.386, "splay_angle": 21.569, "splay_distance": 3.567, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 172.384, "theta": -145.407, "eta_prime": -171.946, "theta_prime": -147.611, "eta_base": -130.154, "theta_base": -132.591, "v0": -3.123, "v1": -18.262, "v2": 31.342, "v3": -34.074, "v4": 23.452, "amplitude": 34.235, "phase_angle": 23.722, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.744, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 134.073, 158.255, 149.838 ], "x_axis": [ -0.700, -0.690, -0.183 ], "y_axis": [ 0.528, -0.328, -0.783 ], "z_axis": [ 0.480, -0.645, 0.595 ], "quaternion": [ -0.376, 0.092, -0.441, 0.810 ] } }, { "index": 1148, "index_chain": 1148, "chain_name": "A", "nt_resnum": 1226, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1226", "linked_nts": [ "///A/1225", "///A/1227" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -68.018, "beta": 177.136, "gamma": 54.118, "delta": 84.672, "epsilon": -85.841, "zeta": -168.792, "epsilon_zeta": 82.951, "bb_type": "BII", "chi": -157.393, "glyco_bond": "anti", "C5prime_xyz": [ -1.880, 8.824, 0.308 ], "P_xyz": [ 0.558, 9.658, 0.726 ], "form": ".", "ssZp": 3.492, "Dp": 4.272, "splay_angle": 168.579, "splay_distance": 19.029, "splay_ratio": 0.995, "d22": null, "d64": null, "eta": -171.318, "theta": -170.748, "eta_prime": -165.371, "theta_prime": 178.653, "eta_base": -143.938, "theta_base": 145.680, "v0": -5.062, "v1": -16.654, "v2": 30.613, "v3": -34.396, "v4": 24.926, "amplitude": 34.317, "phase_angle": 26.867, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.927, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 134.492, 157.123, 153.194 ], "x_axis": [ -0.385, -0.751, -0.536 ], "y_axis": [ 0.824, -0.018, -0.567 ], "z_axis": [ 0.416, -0.660, 0.625 ], "quaternion": [ 0.553, 0.042, 0.431, -0.712 ] } }, { "index": 1149, "index_chain": 1149, "chain_name": "A", "nt_resnum": 1227, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1227", "linked_nts": [ "///A/1226", "///A/1228" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,splayed-apart", "alpha": 51.451, "beta": 162.598, "gamma": 80.956, "delta": 83.779, "epsilon": -144.267, "zeta": -60.140, "epsilon_zeta": -84.128, "bb_type": "BI", "chi": -162.260, "glyco_bond": "anti", "C5prime_xyz": [ -1.240, 8.682, 0.668 ], "P_xyz": [ 1.242, 9.004, -0.099 ], "form": ".", "ssZp": 4.463, "Dp": 4.649, "splay_angle": 34.287, "splay_distance": 5.214, "splay_ratio": 0.295, "d22": null, "d64": null, "eta": -31.586, "theta": -127.051, "eta_prime": -19.309, "theta_prime": -126.757, "eta_base": 14.143, "theta_base": -78.423, "v0": 3.313, "v1": -24.659, "v2": 35.377, "v3": -34.422, "v4": 19.641, "amplitude": 36.379, "phase_angle": 13.476, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3d", "suiteness": 0.058, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 153.447, 158.699, 152.603 ], "x_axis": [ -0.142, 0.251, -0.957 ], "y_axis": [ -0.978, -0.186, 0.096 ], "z_axis": [ -0.154, 0.950, 0.272 ], "quaternion": [ 0.486, -0.439, 0.414, 0.633 ] } }, { "index": 1150, "index_chain": 1150, "chain_name": "A", "nt_resnum": 1228, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1228", "linked_nts": [ "///A/1227", "///A/1229" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -67.317, "beta": 166.388, "gamma": 64.120, "delta": 85.085, "epsilon": -172.944, "zeta": -111.110, "epsilon_zeta": -61.833, "bb_type": "BI", "chi": -155.207, "glyco_bond": "anti", "C5prime_xyz": [ -0.918, 8.648, 0.294 ], "P_xyz": [ 1.672, 8.554, -0.108 ], "form": ".", "ssZp": 4.274, "Dp": 4.440, "splay_angle": 62.770, "splay_distance": 9.676, "splay_ratio": 0.522, "d22": null, "d64": null, "eta": 164.854, "theta": 163.668, "eta_prime": -162.581, "theta_prime": 163.788, "eta_base": -87.085, "theta_base": 151.280, "v0": 6.090, "v1": -26.198, "v2": 35.239, "v3": -32.681, "v4": 16.818, "amplitude": 35.680, "phase_angle": 9.017, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.735, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 150.921, 162.554, 150.165 ], "x_axis": [ -0.923, 0.052, -0.381 ], "y_axis": [ -0.384, -0.193, 0.903 ], "z_axis": [ -0.027, 0.980, 0.198 ], "quaternion": [ 0.143, -0.134, 0.619, 0.761 ] } }, { "index": 1151, "index_chain": 1151, "chain_name": "A", "nt_resnum": 1229, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1229", "linked_nts": [ "///A/1228", "///A/1230" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,cap-acceptor,phosphate", "alpha": -80.177, "beta": -170.381, "gamma": 57.737, "delta": 82.262, "epsilon": -154.311, "zeta": -60.276, "epsilon_zeta": -94.035, "bb_type": "BI", "chi": -152.318, "glyco_bond": "anti", "C5prime_xyz": [ -1.676, 8.792, 0.030 ], "P_xyz": [ 0.803, 9.566, 0.295 ], "form": ".", "ssZp": 4.156, "Dp": 4.509, "splay_angle": 48.798, "splay_distance": 7.342, "splay_ratio": 0.415, "d22": null, "d64": null, "eta": 175.852, "theta": -138.046, "eta_prime": 161.214, "theta_prime": -132.696, "eta_base": 141.869, "theta_base": -94.064, "v0": -1.229, "v1": -20.809, "v2": 33.531, "v3": -35.177, "v4": 22.984, "amplitude": 35.798, "phase_angle": 20.498, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.645, "filter_rmsd": 0.101, "frame": { "rmsd": 0.009, "origin": [ 159.238, 165.287, 154.285 ], "x_axis": [ -0.524, -0.184, -0.832 ], "y_axis": [ -0.843, -0.026, 0.537 ], "z_axis": [ -0.120, 0.983, -0.142 ], "quaternion": [ 0.278, -0.401, 0.640, 0.593 ] } }, { "index": 1152, "index_chain": 1152, "chain_name": "A", "nt_resnum": 1230, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1230", "linked_nts": [ "///A/1229", "///A/1231" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper", "alpha": -73.699, "beta": -165.787, "gamma": 52.269, "delta": 84.151, "epsilon": -115.639, "zeta": -64.837, "epsilon_zeta": -50.802, "bb_type": "--", "chi": 177.714, "glyco_bond": "--", "C5prime_xyz": [ -1.181, 8.139, 1.823 ], "P_xyz": [ 1.168, 7.886, 2.959 ], "form": ".", "ssZp": 4.781, "Dp": 4.793, "splay_angle": 36.794, "splay_distance": 5.617, "splay_ratio": 0.317, "d22": null, "d64": null, "eta": -178.063, "theta": -108.206, "eta_prime": -165.415, "theta_prime": -100.109, "eta_base": -119.931, "theta_base": -51.545, "v0": 7.175, "v1": -27.690, "v2": 36.658, "v3": -33.520, "v4": 16.615, "amplitude": 36.992, "phase_angle": 7.708, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.739, "filter_rmsd": 0.042, "frame": { "rmsd": 0.014, "origin": [ 154.933, 170.741, 151.915 ], "x_axis": [ -0.730, -0.683, -0.037 ], "y_axis": [ 0.215, -0.281, 0.935 ], "z_axis": [ -0.649, 0.675, 0.352 ], "quaternion": [ -0.292, -0.223, 0.524, 0.769 ] } }, { "index": 1153, "index_chain": 1153, "chain_name": "A", "nt_resnum": 1231, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1231", "linked_nts": [ "///A/1230", "///A/1232" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,ribose-zipper,phosphate", "alpha": -58.082, "beta": 157.419, "gamma": 59.845, "delta": 80.806, "epsilon": -157.091, "zeta": -77.436, "epsilon_zeta": -79.654, "bb_type": "BI", "chi": -177.775, "glyco_bond": "anti", "C5prime_xyz": [ -1.557, 8.564, 1.514 ], "P_xyz": [ 1.021, 8.930, 1.748 ], "form": ".", "ssZp": 4.545, "Dp": 4.540, "splay_angle": 27.393, "splay_distance": 4.230, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 156.241, "theta": -154.450, "eta_prime": -169.191, "theta_prime": -156.062, "eta_base": -89.651, "theta_base": -143.848, "v0": -0.183, "v1": -22.491, "v2": 35.323, "v3": -36.388, "v4": 23.063, "amplitude": 37.328, "phase_angle": 18.863, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.403, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 149.845, 169.702, 154.058 ], "x_axis": [ -0.089, -0.624, 0.776 ], "y_axis": [ 0.763, 0.459, 0.456 ], "z_axis": [ -0.641, 0.633, 0.435 ], "quaternion": [ 0.672, -0.066, -0.527, -0.516 ] } }, { "index": 1154, "index_chain": 1154, "chain_name": "A", "nt_resnum": 1232, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1232", "linked_nts": [ "///A/1231", "///A/1233" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -74.147, "beta": -176.203, "gamma": 56.993, "delta": 81.266, "epsilon": -148.456, "zeta": -74.880, "epsilon_zeta": -73.576, "bb_type": "BI", "chi": -174.606, "glyco_bond": "anti", "C5prime_xyz": [ -1.450, 8.541, 1.347 ], "P_xyz": [ 1.034, 8.854, 2.107 ], "form": "A", "ssZp": 4.599, "Dp": 4.637, "splay_angle": 25.534, "splay_distance": 3.935, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 171.390, "theta": -148.217, "eta_prime": 177.442, "theta_prime": -146.561, "eta_base": -158.822, "theta_base": -122.783, "v0": 2.874, "v1": -25.197, "v2": 36.732, "v3": -36.053, "v4": 20.943, "amplitude": 37.915, "phase_angle": 14.352, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.857, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 145.931, 171.212, 153.522 ], "x_axis": [ 0.306, -0.431, 0.849 ], "y_axis": [ 0.773, 0.633, 0.043 ], "z_axis": [ -0.556, 0.643, 0.527 ], "quaternion": [ 0.785, -0.191, -0.447, -0.383 ] } }, { "index": 1155, "index_chain": 1155, "chain_name": "A", "nt_resnum": 1233, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1233", "linked_nts": [ "///A/1232", "///A/1234" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -73.883, "beta": 173.507, "gamma": 62.022, "delta": 80.185, "epsilon": -151.054, "zeta": -70.016, "epsilon_zeta": -81.039, "bb_type": "BI", "chi": -179.356, "glyco_bond": "anti", "C5prime_xyz": [ -1.517, 8.414, 1.616 ], "P_xyz": [ 1.024, 8.796, 2.098 ], "form": "A", "ssZp": 4.647, "Dp": 4.637, "splay_angle": 28.409, "splay_distance": 4.428, "splay_ratio": 0.252, "d22": null, "d64": null, "eta": 166.305, "theta": -145.281, "eta_prime": 178.427, "theta_prime": -143.906, "eta_base": -142.522, "theta_base": -122.244, "v0": 2.507, "v1": -25.280, "v2": 37.193, "v3": -36.703, "v4": 21.570, "amplitude": 38.490, "phase_angle": 14.913, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.829, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 142.629, 172.078, 155.479 ], "x_axis": [ 0.726, -0.113, 0.678 ], "y_axis": [ 0.539, 0.706, -0.460 ], "z_axis": [ -0.427, 0.699, 0.574 ], "quaternion": [ 0.867, -0.334, -0.319, -0.188 ] } }, { "index": 1156, "index_chain": 1156, "chain_name": "A", "nt_resnum": 1234, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1234", "linked_nts": [ "///A/1233", "///A/1235" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -70.413, "beta": 177.119, "gamma": 65.275, "delta": 80.386, "epsilon": -155.800, "zeta": -72.443, "epsilon_zeta": -83.357, "bb_type": "BI", "chi": -175.632, "glyco_bond": "anti", "C5prime_xyz": [ -1.579, 8.585, 1.398 ], "P_xyz": [ 0.942, 9.060, 1.901 ], "form": "A", "ssZp": 4.529, "Dp": 4.562, "splay_angle": 24.593, "splay_distance": 3.842, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 174.381, "theta": -150.179, "eta_prime": -171.039, "theta_prime": -149.476, "eta_base": -133.314, "theta_base": -127.045, "v0": 0.654, "v1": -23.434, "v2": 35.998, "v3": -36.574, "v4": 22.656, "amplitude": 37.766, "phase_angle": 17.599, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.741, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 140.156, 172.876, 159.065 ], "x_axis": [ 0.890, 0.294, 0.349 ], "y_axis": [ 0.122, 0.584, -0.802 ], "z_axis": [ -0.439, 0.757, 0.484 ], "quaternion": [ 0.860, -0.453, -0.229, 0.050 ] } }, { "index": 1157, "index_chain": 1157, "chain_name": "A", "nt_resnum": 1235, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1235", "linked_nts": [ "///A/1234", "///A/1236" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.935, "beta": 172.978, "gamma": 59.843, "delta": 80.731, "epsilon": -157.659, "zeta": -77.773, "epsilon_zeta": -79.886, "bb_type": "BI", "chi": -163.972, "glyco_bond": "anti", "C5prime_xyz": [ -1.334, 8.698, 0.748 ], "P_xyz": [ 1.249, 9.098, 0.891 ], "form": ".", "ssZp": 4.471, "Dp": 4.553, "splay_angle": 26.013, "splay_distance": 4.631, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 176.076, "theta": -122.353, "eta_prime": -170.075, "theta_prime": -131.817, "eta_base": -133.674, "theta_base": -117.949, "v0": 0.905, "v1": -23.101, "v2": 35.309, "v3": -35.749, "v4": 22.000, "amplitude": 36.972, "phase_angle": 17.250, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.900, "filter_rmsd": 0.043, "frame": { "rmsd": 0.010, "origin": [ 138.621, 174.112, 162.362 ], "x_axis": [ 0.710, 0.704, -0.008 ], "y_axis": [ -0.368, 0.361, -0.857 ], "z_axis": [ -0.601, 0.611, 0.515 ], "quaternion": [ 0.804, -0.456, -0.184, 0.333 ] } }, { "index": 1158, "index_chain": 1158, "chain_name": "A", "nt_resnum": 1236, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1236", "linked_nts": [ "///A/1235", "///A/1237" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor", "alpha": 138.011, "beta": -150.612, "gamma": -165.237, "delta": 80.352, "epsilon": -145.695, "zeta": -76.623, "epsilon_zeta": -69.071, "bb_type": "BI", "chi": 174.835, "glyco_bond": "anti", "C5prime_xyz": [ -1.559, 8.260, 1.937 ], "P_xyz": [ -0.302, 10.403, 1.124 ], "form": "A", "ssZp": 4.683, "Dp": 4.695, "splay_angle": 26.774, "splay_distance": 4.192, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 172.339, "theta": -179.161, "eta_prime": -170.985, "theta_prime": -171.033, "eta_base": -131.822, "theta_base": -146.417, "v0": 3.799, "v1": -26.248, "v2": 37.552, "v3": -36.347, "v4": 20.550, "amplitude": 38.552, "phase_angle": 13.079, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.481, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 138.436, 176.552, 166.294 ], "x_axis": [ 0.462, 0.821, -0.336 ], "y_axis": [ -0.613, 0.022, -0.790 ], "z_axis": [ -0.641, 0.571, 0.513 ], "quaternion": [ 0.707, -0.481, -0.108, 0.507 ] } }, { "index": 1159, "index_chain": 1159, "chain_name": "A", "nt_resnum": 1237, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1237", "linked_nts": [ "///A/1236", "///A/1238" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop", "alpha": -50.357, "beta": -174.522, "gamma": 40.229, "delta": 81.806, "epsilon": -164.984, "zeta": -84.764, "epsilon_zeta": -80.220, "bb_type": "BI", "chi": -161.528, "glyco_bond": "anti", "C5prime_xyz": [ -1.241, 8.698, 0.653 ], "P_xyz": [ 1.183, 9.095, 1.538 ], "form": "A", "ssZp": 4.404, "Dp": 4.505, "splay_angle": 22.905, "splay_distance": 3.656, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 176.900, "theta": -133.416, "eta_prime": -173.304, "theta_prime": -136.062, "eta_base": -144.216, "theta_base": -100.549, "v0": 3.056, "v1": -24.820, "v2": 36.026, "v3": -35.281, "v4": 20.300, "amplitude": 37.134, "phase_angle": 14.029, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.592, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 138.165, 178.448, 170.022 ], "x_axis": [ 0.062, 0.715, -0.696 ], "y_axis": [ -0.762, -0.417, -0.496 ], "z_axis": [ -0.645, 0.561, 0.519 ], "quaternion": [ 0.540, -0.490, 0.024, 0.684 ] } }, { "index": 1160, "index_chain": 1160, "chain_name": "A", "nt_resnum": 1238, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1238", "linked_nts": [ "///A/1237", "///A/1239" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 160.016, "beta": -140.024, "gamma": 159.482, "delta": 81.611, "epsilon": -133.505, "zeta": -84.206, "epsilon_zeta": -49.299, "bb_type": "BI", "chi": 174.181, "glyco_bond": "anti", "C5prime_xyz": [ -1.461, 8.240, 1.984 ], "P_xyz": [ 0.732, 9.298, 1.060 ], "form": "A", "ssZp": 4.716, "Dp": 4.722, "splay_angle": 27.373, "splay_distance": 4.288, "splay_ratio": 0.242, "d22": null, "d64": null, "eta": 158.653, "theta": -152.015, "eta_prime": 179.850, "theta_prime": -154.342, "eta_base": -123.396, "theta_base": -136.459, "v0": 3.635, "v1": -25.343, "v2": 36.228, "v3": -35.166, "v4": 19.897, "amplitude": 37.206, "phase_angle": 13.168, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.299, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 137.062, 181.808, 170.953 ], "x_axis": [ -0.351, 0.292, -0.890 ], "y_axis": [ -0.675, -0.737, 0.024 ], "z_axis": [ -0.649, 0.610, 0.455 ], "quaternion": [ 0.303, -0.482, 0.199, 0.797 ] } }, { "index": 1161, "index_chain": 1161, "chain_name": "A", "nt_resnum": 1239, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1239", "linked_nts": [ "///A/1238", "///A/1240" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -48.679, "beta": 169.161, "gamma": 46.758, "delta": 79.830, "epsilon": -126.968, "zeta": -85.992, "epsilon_zeta": -40.976, "bb_type": "--", "chi": -171.970, "glyco_bond": "anti", "C5prime_xyz": [ -1.523, 8.622, 1.208 ], "P_xyz": [ 0.945, 9.074, 1.913 ], "form": "A", "ssZp": 4.585, "Dp": 4.691, "splay_angle": 26.191, "splay_distance": 4.147, "splay_ratio": 0.227, "d22": 4.644, "d64": 4.517, "eta": 177.459, "theta": -144.664, "eta_prime": -172.518, "theta_prime": -141.472, "eta_base": -142.607, "theta_base": -117.462, "v0": 0.695, "v1": -23.613, "v2": 36.257, "v3": -36.851, "v4": 22.826, "amplitude": 38.035, "phase_angle": 17.586, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.638, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 136.381, 185.820, 172.303 ], "x_axis": [ -0.629, -0.141, -0.765 ], "y_axis": [ -0.352, -0.825, 0.441 ], "z_axis": [ -0.693, 0.547, 0.470 ], "quaternion": [ 0.062, -0.426, 0.289, 0.855 ] } }, { "index": 1162, "index_chain": 1162, "chain_name": "A", "nt_resnum": 1240, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1240", "linked_nts": [ "///A/1239", "///A/1241" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack", "alpha": -77.902, "beta": 162.718, "gamma": 67.014, "delta": 78.937, "epsilon": -143.702, "zeta": -73.476, "epsilon_zeta": -70.226, "bb_type": "BI", "chi": -169.800, "glyco_bond": "anti", "C5prime_xyz": [ -1.487, 8.643, 1.074 ], "P_xyz": [ 1.055, 9.204, 0.867 ], "form": "A", "ssZp": 4.635, "Dp": 4.685, "splay_angle": 22.500, "splay_distance": 3.587, "splay_ratio": 0.199, "d22": 4.077, "d64": 4.195, "eta": 159.634, "theta": -143.871, "eta_prime": 172.245, "theta_prime": -144.962, "eta_base": -151.604, "theta_base": -116.846, "v0": 1.393, "v1": -24.808, "v2": 37.446, "v3": -37.622, "v4": 22.830, "amplitude": 39.065, "phase_angle": 16.552, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.470, "filter_rmsd": 0.100, "frame": { "rmsd": 0.009, "origin": [ 133.821, 189.021, 172.934 ], "x_axis": [ -0.525, -0.678, -0.514 ], "y_axis": [ 0.021, -0.614, 0.789 ], "z_axis": [ -0.851, 0.404, 0.337 ], "quaternion": [ -0.222, -0.434, 0.379, 0.787 ] } }, { "index": 1163, "index_chain": 1163, "chain_name": "A", "nt_resnum": 1241, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1241", "linked_nts": [ "///A/1240", "///A/1242" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -72.591, "beta": 168.554, "gamma": 64.133, "delta": 81.246, "epsilon": -161.445, "zeta": -67.849, "epsilon_zeta": -93.597, "bb_type": "BI", "chi": -169.981, "glyco_bond": "anti", "C5prime_xyz": [ -1.569, 8.704, 1.084 ], "P_xyz": [ 0.989, 9.239, 1.235 ], "form": "A", "ssZp": 4.484, "Dp": 4.500, "splay_angle": 22.210, "splay_distance": 3.564, "splay_ratio": 0.197, "d22": 4.530, "d64": 4.678, "eta": 163.573, "theta": -149.128, "eta_prime": -179.328, "theta_prime": -151.643, "eta_base": -132.070, "theta_base": -133.286, "v0": -0.203, "v1": -22.522, "v2": 35.298, "v3": -36.355, "v4": 23.052, "amplitude": 37.298, "phase_angle": 18.850, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.768, "filter_rmsd": 0.059, "frame": { "rmsd": 0.008, "origin": [ 130.553, 190.217, 172.063 ], "x_axis": [ -0.265, -0.964, -0.009 ], "y_axis": [ 0.263, -0.082, 0.961 ], "z_axis": [ -0.928, 0.252, 0.276 ], "quaternion": [ -0.482, -0.368, 0.476, 0.637 ] } }, { "index": 1164, "index_chain": 1164, "chain_name": "A", "nt_resnum": 1242, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1242", "linked_nts": [ "///A/1241", "///A/1243" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -72.720, "beta": 179.675, "gamma": 58.789, "delta": 80.727, "epsilon": -148.364, "zeta": -71.236, "epsilon_zeta": -77.127, "bb_type": "BI", "chi": -164.313, "glyco_bond": "anti", "C5prime_xyz": [ -1.529, 8.726, 0.780 ], "P_xyz": [ 0.996, 9.297, 1.183 ], "form": "A", "ssZp": 4.463, "Dp": 4.581, "splay_angle": 20.321, "splay_distance": 3.335, "splay_ratio": 0.180, "d22": null, "d64": null, "eta": 171.456, "theta": -144.481, "eta_prime": -177.564, "theta_prime": -144.723, "eta_base": -144.939, "theta_base": -122.055, "v0": 0.277, "v1": -22.630, "v2": 35.122, "v3": -35.929, "v4": 22.488, "amplitude": 36.968, "phase_angle": 18.186, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.831, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 127.294, 191.021, 170.866 ], "x_axis": [ -0.118, -0.875, 0.469 ], "y_axis": [ 0.321, 0.413, 0.852 ], "z_axis": [ -0.940, 0.251, 0.232 ], "quaternion": [ 0.618, 0.243, -0.570, -0.484 ] } }, { "index": 1165, "index_chain": 1165, "chain_name": "A", "nt_resnum": 1243, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1243", "linked_nts": [ "///A/1242", "///A/1244" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -63.418, "beta": 179.725, "gamma": 39.602, "delta": 79.721, "epsilon": -151.454, "zeta": -79.581, "epsilon_zeta": -71.873, "bb_type": "BI", "chi": -162.698, "glyco_bond": "anti", "C5prime_xyz": [ -1.556, 8.744, 0.673 ], "P_xyz": [ 0.812, 9.442, 1.526 ], "form": ".", "ssZp": 4.417, "Dp": 4.565, "splay_angle": 23.190, "splay_distance": 3.867, "splay_ratio": 0.251, "d22": null, "d64": null, "eta": 160.164, "theta": -157.276, "eta_prime": 171.026, "theta_prime": -155.302, "eta_base": -152.291, "theta_base": -73.318, "v0": -0.263, "v1": -22.705, "v2": 35.782, "v3": -36.911, "v4": 23.442, "amplitude": 37.843, "phase_angle": 18.996, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.654, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 124.035, 190.407, 170.511 ], "x_axis": [ 0.407, -0.558, 0.724 ], "y_axis": [ 0.284, 0.830, 0.480 ], "z_axis": [ -0.868, 0.010, 0.496 ], "quaternion": [ 0.827, 0.142, -0.482, -0.254 ] } }, { "index": 1166, "index_chain": 1166, "chain_name": "A", "nt_resnum": 1244, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1244", "linked_nts": [ "///A/1243", "///A/1245" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -53.772, "beta": 169.416, "gamma": 51.310, "delta": 76.515, "epsilon": -145.176, "zeta": -64.651, "epsilon_zeta": -80.525, "bb_type": "BI", "chi": 19.198, "glyco_bond": "syn", "C5prime_xyz": [ -5.779, 4.111, -0.483 ], "P_xyz": [ -6.270, 1.578, -0.838 ], "form": ".", "ssZp": -4.312, "Dp": 4.450, "splay_angle": 20.316, "splay_distance": 3.017, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 174.337, "theta": -141.670, "eta_prime": -178.798, "theta_prime": -134.687, "eta_base": -91.738, "theta_base": -156.073, "v0": -8.613, "v1": -16.082, "v2": 33.138, "v3": -39.101, "v4": 30.084, "amplitude": 38.733, "phase_angle": 31.179, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.828, "filter_rmsd": 0.044, "frame": { "rmsd": 0.017, "origin": [ 122.584, 191.739, 173.839 ], "x_axis": [ 0.009, -0.992, -0.122 ], "y_axis": [ -0.585, 0.094, -0.806 ], "z_axis": [ 0.811, 0.079, -0.579 ], "quaternion": [ 0.362, -0.611, 0.645, -0.282 ] } }, { "index": 1167, "index_chain": 1167, "chain_name": "A", "nt_resnum": 1245, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1245", "linked_nts": [ "///A/1244", "///A/1246" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -63.078, "beta": -161.070, "gamma": 41.291, "delta": 130.267, "epsilon": 61.748, "zeta": 69.796, "epsilon_zeta": -8.048, "bb_type": "--", "chi": 63.759, "glyco_bond": "syn", "C5prime_xyz": [ -5.649, 4.804, 1.162 ], "P_xyz": [ -7.002, 2.702, 0.386 ], "form": ".", "ssZp": -0.913, "Dp": 1.816, "splay_angle": 24.639, "splay_distance": 3.842, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 169.712, "theta": -106.402, "eta_prime": -142.284, "theta_prime": -138.033, "eta_base": -162.432, "theta_base": -90.180, "v0": -29.841, "v1": 36.708, "v2": -29.026, "v3": 12.723, "v4": 10.551, "amplitude": 35.778, "phase_angle": 144.222, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.239, "filter_rmsd": 0.021, "frame": { "rmsd": 0.021, "origin": [ 119.824, 190.549, 174.090 ], "x_axis": [ 0.275, -0.959, 0.061 ], "y_axis": [ -0.878, -0.277, -0.390 ], "z_axis": [ 0.391, 0.054, -0.919 ], "quaternion": [ -0.141, 0.786, -0.585, 0.144 ] } }, { "index": 1168, "index_chain": 1168, "chain_name": "A", "nt_resnum": 1246, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1246", "linked_nts": [ "///A/1245", "///A/1247" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -143.029, "beta": -165.158, "gamma": 20.166, "delta": 139.064, "epsilon": 174.941, "zeta": -98.971, "epsilon_zeta": -86.088, "bb_type": "BI", "chi": 81.494, "glyco_bond": "syn", "C5prime_xyz": [ -5.365, 5.583, 1.842 ], "P_xyz": [ -7.476, 4.042, 1.784 ], "form": ".", "ssZp": -2.652, "Dp": 2.557, "splay_angle": 36.277, "splay_distance": 6.394, "splay_ratio": 0.320, "d22": null, "d64": null, "eta": 137.257, "theta": -156.273, "eta_prime": 173.321, "theta_prime": -162.032, "eta_base": -125.615, "theta_base": 176.579, "v0": -32.193, "v1": 43.265, "v2": -36.834, "v3": 19.269, "v4": 7.701, "amplitude": 42.281, "phase_angle": 150.595, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.019, "frame": { "rmsd": 0.019, "origin": [ 117.585, 191.027, 177.176 ], "x_axis": [ 0.729, -0.530, 0.433 ], "y_axis": [ -0.475, -0.847, -0.238 ], "z_axis": [ 0.493, -0.033, -0.870 ], "quaternion": [ -0.055, 0.928, -0.271, 0.249 ] } }, { "index": 1169, "index_chain": 1169, "chain_name": "A", "nt_resnum": 1247, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1247", "linked_nts": [ "///A/1246", "///A/1248" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -36.307, "beta": -166.806, "gamma": 22.261, "delta": 139.382, "epsilon": -170.970, "zeta": -94.014, "epsilon_zeta": -76.956, "bb_type": "BI", "chi": -116.129, "glyco_bond": "anti", "C5prime_xyz": [ -2.733, 8.528, -1.396 ], "P_xyz": [ -1.327, 10.651, -0.810 ], "form": ".", "ssZp": 2.696, "Dp": 2.472, "splay_angle": 21.478, "splay_distance": 3.814, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": -179.886, "theta": -150.692, "eta_prime": -162.798, "theta_prime": -170.945, "eta_base": -178.588, "theta_base": -142.101, "v0": -29.379, "v1": 39.728, "v2": -34.119, "v3": 18.052, "v4": 6.882, "amplitude": 38.968, "phase_angle": 151.113, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 118.285, 186.890, 182.001 ], "x_axis": [ 0.116, 0.993, 0.031 ], "y_axis": [ -0.850, 0.115, -0.513 ], "z_axis": [ -0.513, 0.033, 0.858 ], "quaternion": [ 0.723, -0.189, -0.188, 0.638 ] } }, { "index": 1170, "index_chain": 1170, "chain_name": "A", "nt_resnum": 1248, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1248", "linked_nts": [ "///A/1247", "///A/1249" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -145.939, "beta": 127.260, "gamma": 138.629, "delta": 83.697, "epsilon": -145.197, "zeta": -78.059, "epsilon_zeta": -67.138, "bb_type": "BI", "chi": -174.716, "glyco_bond": "anti", "C5prime_xyz": [ -1.555, 8.678, 1.330 ], "P_xyz": [ -0.210, 10.336, -0.180 ], "form": ".", "ssZp": 4.273, "Dp": 4.394, "splay_angle": 18.281, "splay_distance": 2.942, "splay_ratio": 0.160, "d22": 4.135, "d64": 3.218, "eta": 163.879, "theta": -146.430, "eta_prime": 161.112, "theta_prime": -150.744, "eta_base": -158.730, "theta_base": -97.625, "v0": -3.220, "v1": -17.822, "v2": 30.815, "v3": -33.598, "v4": 23.231, "amplitude": 33.732, "phase_angle": 24.001, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.009, "origin": [ 118.216, 186.710, 185.810 ], "x_axis": [ -0.274, 0.923, -0.270 ], "y_axis": [ -0.779, -0.378, -0.501 ], "z_axis": [ -0.564, 0.073, 0.823 ], "quaternion": [ 0.541, -0.265, -0.136, 0.786 ] } }, { "index": 1171, "index_chain": 1171, "chain_name": "A", "nt_resnum": 1249, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1249", "linked_nts": [ "///A/1248", "///A/1250" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,BII,non-canonical,non-pair-contact,internal-loop", "alpha": 173.834, "beta": -152.381, "gamma": 135.897, "delta": 81.047, "epsilon": -96.088, "zeta": -164.651, "epsilon_zeta": 68.563, "bb_type": "BII", "chi": -159.100, "glyco_bond": "anti", "C5prime_xyz": [ -1.403, 8.722, 0.473 ], "P_xyz": [ 0.778, 9.288, -0.843 ], "form": ".", "ssZp": 3.907, "Dp": 4.666, "splay_angle": 63.033, "splay_distance": 9.701, "splay_ratio": 0.524, "d22": null, "d64": null, "eta": 146.961, "theta": 143.805, "eta_prime": 169.486, "theta_prime": 168.122, "eta_base": -123.210, "theta_base": 152.557, "v0": 1.288, "v1": -23.499, "v2": 35.585, "v3": -35.836, "v4": 21.804, "amplitude": 37.151, "phase_angle": 16.698, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.100, "frame": { "rmsd": 0.009, "origin": [ 116.441, 188.605, 187.196 ], "x_axis": [ -0.708, 0.344, -0.617 ], "y_axis": [ -0.506, -0.856, 0.103 ], "z_axis": [ -0.493, 0.385, 0.780 ], "quaternion": [ 0.233, -0.303, 0.133, 0.914 ] } }, { "index": 1172, "index_chain": 1172, "chain_name": "A", "nt_resnum": 1250, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1250", "linked_nts": [ "///A/1249", "///A/1251" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,k-turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -63.897, "beta": 167.409, "gamma": 33.981, "delta": 146.208, "epsilon": -94.761, "zeta": 41.688, "epsilon_zeta": 223.551, "bb_type": "--", "chi": -109.070, "glyco_bond": "anti", "C5prime_xyz": [ -1.489, 8.183, -1.724 ], "P_xyz": [ 0.957, 8.837, -1.086 ], "form": ".", "ssZp": 0.369, "Dp": 1.224, "splay_angle": 135.812, "splay_distance": 17.995, "splay_ratio": 0.927, "d22": null, "d64": null, "eta": -153.018, "theta": 82.228, "eta_prime": -162.747, "theta_prime": 25.387, "eta_base": 165.206, "theta_base": -16.624, "v0": -14.598, "v1": 29.332, "v2": -32.134, "v3": 24.545, "v4": -6.477, "amplitude": 32.406, "phase_angle": 172.563, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "3b", "suiteness": 0.134, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 118.715, 186.619, 196.415 ], "x_axis": [ 0.075, 0.431, -0.899 ], "y_axis": [ -0.835, -0.465, -0.293 ], "z_axis": [ -0.545, 0.773, 0.325 ], "quaternion": [ 0.483, -0.551, 0.183, 0.655 ] } }, { "index": 1173, "index_chain": 1173, "chain_name": "A", "nt_resnum": 1251, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1251", "linked_nts": [ "///A/1250", "///A/1252" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,k-turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": 95.550, "beta": 156.452, "gamma": 81.740, "delta": 145.660, "epsilon": -141.206, "zeta": 14.218, "epsilon_zeta": 204.576, "bb_type": "--", "chi": -107.925, "glyco_bond": "anti", "C5prime_xyz": [ -2.367, 8.250, -1.814 ], "P_xyz": [ 0.082, 8.550, -2.677 ], "form": ".", "ssZp": 1.781, "Dp": 1.789, "splay_angle": 108.661, "splay_distance": 15.737, "splay_ratio": 0.812, "d22": null, "d64": null, "eta": 1.689, "theta": 4.795, "eta_prime": 48.797, "theta_prime": -19.617, "eta_base": 74.604, "theta_base": 4.791, "v0": -24.112, "v1": 37.370, "v2": -35.639, "v3": 22.650, "v4": 0.706, "amplitude": 37.883, "phase_angle": 160.177, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.100, "frame": { "rmsd": 0.007, "origin": [ 103.226, 177.698, 194.335 ], "x_axis": [ -0.372, 0.926, 0.066 ], "y_axis": [ 0.915, 0.353, 0.197 ], "z_axis": [ 0.159, 0.134, -0.978 ], "quaternion": [ 0.028, 0.560, 0.822, 0.101 ] } }, { "index": 1174, "index_chain": 1174, "chain_name": "A", "nt_resnum": 1252, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1252", "linked_nts": [ "///A/1251", "///A/1253" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate,splayed-apart", "alpha": -108.725, "beta": -158.079, "gamma": 60.863, "delta": 144.756, "epsilon": -152.618, "zeta": 168.989, "epsilon_zeta": 38.393, "bb_type": "--", "chi": -125.285, "glyco_bond": "anti", "C5prime_xyz": [ -2.022, 8.610, -0.961 ], "P_xyz": [ 0.230, 9.558, -0.034 ], "form": ".", "ssZp": 2.310, "Dp": 2.142, "splay_angle": 66.309, "splay_distance": 10.011, "splay_ratio": 0.549, "d22": null, "d64": null, "eta": 150.081, "theta": 148.278, "eta_prime": -151.395, "theta_prime": 143.208, "eta_base": -144.850, "theta_base": 172.162, "v0": -22.806, "v1": 35.436, "v2": -33.679, "v3": 21.423, "v4": 0.701, "amplitude": 35.818, "phase_angle": 160.102, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 117.400, 180.139, 200.722 ], "x_axis": [ -0.597, -0.449, 0.665 ], "y_axis": [ -0.468, -0.478, -0.744 ], "z_axis": [ 0.652, -0.755, 0.075 ], "quaternion": [ 0.006, 0.449, -0.511, 0.733 ] } }, { "index": 1175, "index_chain": 1175, "chain_name": "A", "nt_resnum": 1253, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1253", "linked_nts": [ "///A/1252", "///A/1254" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -70.404, "beta": 160.210, "gamma": 52.574, "delta": 80.418, "epsilon": -122.461, "zeta": -86.003, "epsilon_zeta": -36.458, "bb_type": "--", "chi": 170.945, "glyco_bond": "anti", "C5prime_xyz": [ -1.533, 8.092, 2.135 ], "P_xyz": [ 1.004, 8.151, 2.755 ], "form": "A", "ssZp": 4.793, "Dp": 4.781, "splay_angle": 28.241, "splay_distance": 4.225, "splay_ratio": 0.246, "d22": null, "d64": null, "eta": -168.486, "theta": -136.217, "eta_prime": 174.059, "theta_prime": -131.987, "eta_base": -177.796, "theta_base": -99.832, "v0": 4.482, "v1": -26.868, "v2": 37.869, "v3": -36.276, "v4": 20.038, "amplitude": 38.728, "phase_angle": 12.090, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.393, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 125.013, 182.451, 194.646 ], "x_axis": [ -0.186, -0.470, 0.863 ], "y_axis": [ -0.890, -0.291, -0.350 ], "z_axis": [ 0.415, -0.834, -0.364 ], "quaternion": [ 0.199, 0.606, -0.561, 0.527 ] } }, { "index": 1176, "index_chain": 1176, "chain_name": "A", "nt_resnum": 1254, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1254", "linked_nts": [ "///A/1253", "///A/1255" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,A-minor", "alpha": -62.724, "beta": 157.408, "gamma": 65.458, "delta": 81.822, "epsilon": -125.837, "zeta": -68.970, "epsilon_zeta": -56.868, "bb_type": "--", "chi": -178.423, "glyco_bond": "anti", "C5prime_xyz": [ -1.445, 8.369, 1.579 ], "P_xyz": [ 1.146, 8.668, 1.536 ], "form": ".", "ssZp": 4.736, "Dp": 4.750, "splay_angle": 33.558, "splay_distance": 5.150, "splay_ratio": 0.290, "d22": null, "d64": null, "eta": 171.714, "theta": -120.910, "eta_prime": -172.606, "theta_prime": -118.892, "eta_base": -123.717, "theta_base": -76.073, "v0": 3.212, "v1": -25.265, "v2": 36.502, "v3": -35.666, "v4": 20.484, "amplitude": 37.593, "phase_angle": 13.838, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.456, "filter_rmsd": 0.040, "frame": { "rmsd": 0.012, "origin": [ 127.598, 179.141, 195.115 ], "x_axis": [ -0.709, -0.581, 0.400 ], "y_axis": [ -0.568, 0.134, -0.812 ], "z_axis": [ 0.418, -0.803, -0.425 ], "quaternion": [ 0.006, -0.381, 0.753, -0.536 ] } }, { "index": 1177, "index_chain": 1177, "chain_name": "A", "nt_resnum": 1255, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1255", "linked_nts": [ "///A/1254", "///A/1256" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -57.079, "beta": 158.769, "gamma": 58.466, "delta": 80.585, "epsilon": -141.649, "zeta": -70.732, "epsilon_zeta": -70.916, "bb_type": "BI", "chi": -175.120, "glyco_bond": "anti", "C5prime_xyz": [ -1.542, 8.573, 1.384 ], "P_xyz": [ 1.037, 8.945, 1.574 ], "form": "A", "ssZp": 4.640, "Dp": 4.655, "splay_angle": 25.038, "splay_distance": 3.988, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": 163.806, "theta": -135.761, "eta_prime": -169.164, "theta_prime": -135.698, "eta_base": -98.309, "theta_base": -102.699, "v0": 1.036, "v1": -23.574, "v2": 35.901, "v3": -36.256, "v4": 22.215, "amplitude": 37.549, "phase_angle": 17.038, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.649, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 126.292, 174.181, 194.650 ], "x_axis": [ -0.889, -0.178, -0.422 ], "y_axis": [ 0.245, 0.592, -0.768 ], "z_axis": [ 0.386, -0.786, -0.483 ], "quaternion": [ 0.235, 0.020, 0.861, -0.451 ] } }, { "index": 1178, "index_chain": 1178, "chain_name": "A", "nt_resnum": 1256, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1256", "linked_nts": [ "///A/1255", "///A/1257" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -59.038, "beta": 172.076, "gamma": 50.342, "delta": 79.581, "epsilon": -148.851, "zeta": -74.658, "epsilon_zeta": -74.193, "bb_type": "BI", "chi": -165.480, "glyco_bond": "anti", "C5prime_xyz": [ -1.510, 8.750, 0.830 ], "P_xyz": [ 1.015, 9.287, 1.202 ], "form": "A", "ssZp": 4.542, "Dp": 4.627, "splay_angle": 23.896, "splay_distance": 3.835, "splay_ratio": 0.210, "d22": 4.440, "d64": 4.493, "eta": 167.178, "theta": -148.223, "eta_prime": -175.801, "theta_prime": -145.992, "eta_base": -123.305, "theta_base": -121.169, "v0": 0.105, "v1": -23.338, "v2": 36.400, "v3": -37.355, "v4": 23.469, "amplitude": 38.373, "phase_angle": 18.453, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.942, "filter_rmsd": 0.059, "frame": { "rmsd": 0.008, "origin": [ 125.614, 170.505, 193.260 ], "x_axis": [ -0.525, 0.265, -0.809 ], "y_axis": [ 0.770, 0.552, -0.319 ], "z_axis": [ 0.362, -0.790, -0.494 ], "quaternion": [ 0.365, 0.323, 0.802, -0.346 ] } }, { "index": 1179, "index_chain": 1179, "chain_name": "A", "nt_resnum": 1257, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1257", "linked_nts": [ "///A/1256", "///A/1258" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -58.769, "beta": 177.017, "gamma": 48.715, "delta": 80.625, "epsilon": -161.431, "zeta": -75.585, "epsilon_zeta": -85.846, "bb_type": "BI", "chi": -158.006, "glyco_bond": "anti", "C5prime_xyz": [ -1.345, 8.814, 0.398 ], "P_xyz": [ 1.179, 9.354, 0.788 ], "form": "A", "ssZp": 4.320, "Dp": 4.494, "splay_angle": 21.820, "splay_distance": 3.782, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 170.404, "theta": -129.251, "eta_prime": -177.459, "theta_prime": -139.772, "eta_base": -140.679, "theta_base": -121.131, "v0": -0.308, "v1": -22.183, "v2": 34.987, "v3": -36.133, "v4": 23.001, "amplitude": 37.023, "phase_angle": 19.087, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.927, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 125.090, 167.221, 191.350 ], "x_axis": [ -0.079, 0.645, -0.760 ], "y_axis": [ 0.953, 0.272, 0.132 ], "z_axis": [ 0.292, -0.714, -0.636 ], "quaternion": [ 0.373, 0.567, 0.705, -0.207 ] } }, { "index": 1180, "index_chain": 1180, "chain_name": "A", "nt_resnum": 1258, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1258", "linked_nts": [ "///A/1257", "///A/1259" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 153.242, "beta": -166.017, "gamma": 173.256, "delta": 80.470, "epsilon": -112.351, "zeta": -96.582, "epsilon_zeta": -15.770, "bb_type": "--", "chi": -177.674, "glyco_bond": "anti", "C5prime_xyz": [ -1.174, 8.337, 1.584 ], "P_xyz": [ 0.515, 10.080, 0.641 ], "form": "A", "ssZp": 4.691, "Dp": 4.786, "splay_angle": 21.892, "splay_distance": 3.452, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": 158.743, "theta": -165.264, "eta_prime": 170.702, "theta_prime": -158.946, "eta_base": -152.785, "theta_base": -128.358, "v0": 5.611, "v1": -27.506, "v2": 37.971, "v3": -35.771, "v4": 18.994, "amplitude": 38.617, "phase_angle": 10.495, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.904, "filter_rmsd": 0.043, "frame": { "rmsd": 0.010, "origin": [ 124.090, 165.183, 188.326 ], "x_axis": [ 0.312, 0.831, -0.461 ], "y_axis": [ 0.901, -0.105, 0.420 ], "z_axis": [ 0.301, -0.546, -0.782 ], "quaternion": [ 0.326, 0.741, 0.584, -0.054 ] } }, { "index": 1181, "index_chain": 1181, "chain_name": "A", "nt_resnum": 1259, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1259", "linked_nts": [ "///A/1258", "///A/1260" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": -50.111, "beta": 138.607, "gamma": 60.532, "delta": 75.651, "epsilon": -111.680, "zeta": -116.634, "epsilon_zeta": 4.954, "bb_type": "--", "chi": -173.695, "glyco_bond": "anti", "C5prime_xyz": [ -1.744, 8.680, 1.262 ], "P_xyz": [ 0.759, 9.183, 0.833 ], "form": ".", "ssZp": 4.591, "Dp": 4.753, "splay_angle": 119.448, "splay_distance": 15.133, "splay_ratio": 0.864, "d22": null, "d64": null, "eta": 168.787, "theta": -173.915, "eta_prime": -177.032, "theta_prime": 160.401, "eta_base": -137.956, "theta_base": 115.249, "v0": -1.121, "v1": -23.782, "v2": 38.339, "v3": -40.073, "v4": 25.930, "amplitude": 40.844, "phase_angle": 20.169, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.880, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 124.010, 164.613, 184.922 ], "x_axis": [ 0.701, 0.703, -0.120 ], "y_axis": [ 0.652, -0.563, 0.508 ], "z_axis": [ 0.290, -0.434, -0.853 ], "quaternion": [ 0.267, 0.883, 0.384, 0.048 ] } }, { "index": 1182, "index_chain": 1182, "chain_name": "A", "nt_resnum": 1260, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1260", "linked_nts": [ "///A/1259", "///A/1261" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor,cap-acceptor,splayed-apart", "alpha": -158.557, "beta": 141.040, "gamma": 45.790, "delta": 146.829, "epsilon": -89.293, "zeta": -75.131, "epsilon_zeta": -14.162, "bb_type": "--", "chi": -112.833, "glyco_bond": "anti", "C5prime_xyz": [ -1.816, 8.337, -1.559 ], "P_xyz": [ 0.781, 8.421, -1.175 ], "form": ".", "ssZp": 0.468, "Dp": 0.771, "splay_angle": 132.738, "splay_distance": 17.990, "splay_ratio": 0.916, "d22": null, "d64": null, "eta": 79.885, "theta": -37.592, "eta_prime": 103.944, "theta_prime": -70.235, "eta_base": 81.762, "theta_base": -32.820, "v0": -19.641, "v1": 33.913, "v2": -34.472, "v3": 24.009, "v4": -2.964, "amplitude": 35.538, "phase_angle": 165.934, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1z", "suiteness": 0.046, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 123.664, 149.711, 187.535 ], "x_axis": [ 0.258, 0.289, 0.922 ], "y_axis": [ 0.372, 0.851, -0.371 ], "z_axis": [ -0.892, 0.439, 0.112 ], "quaternion": [ 0.745, -0.272, -0.608, -0.028 ] } }, { "index": 1183, "index_chain": 1183, "chain_name": "A", "nt_resnum": 1261, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1261", "linked_nts": [ "///A/1260", "///A/1262" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": -75.939, "beta": -153.938, "gamma": 56.297, "delta": 78.752, "epsilon": -157.130, "zeta": -68.659, "epsilon_zeta": -88.471, "bb_type": "BI", "chi": -172.710, "glyco_bond": "anti", "C5prime_xyz": [ -1.414, 8.667, 1.229 ], "P_xyz": [ 0.888, 9.023, 2.417 ], "form": "A", "ssZp": 4.594, "Dp": 4.590, "splay_angle": 26.521, "splay_distance": 4.133, "splay_ratio": 0.233, "d22": 4.818, "d64": 4.996, "eta": 161.659, "theta": -152.105, "eta_prime": -158.931, "theta_prime": -147.132, "eta_base": -150.168, "theta_base": -120.569, "v0": 0.523, "v1": -24.010, "v2": 37.027, "v3": -37.713, "v4": 23.421, "amplitude": 38.890, "phase_angle": 17.806, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.825, "filter_rmsd": 0.059, "frame": { "rmsd": 0.007, "origin": [ 126.618, 164.622, 177.913 ], "x_axis": [ 0.870, -0.198, 0.451 ], "y_axis": [ -0.363, -0.876, 0.317 ], "z_axis": [ 0.333, -0.439, -0.834 ], "quaternion": [ 0.200, 0.946, -0.148, 0.207 ] } }, { "index": 1184, "index_chain": 1184, "chain_name": "A", "nt_resnum": 1262, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1262", "linked_nts": [ "///A/1261", "///A/1263" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop", "alpha": -76.376, "beta": -174.419, "gamma": 60.655, "delta": 79.718, "epsilon": -152.960, "zeta": -65.841, "epsilon_zeta": -87.119, "bb_type": "BI", "chi": -166.365, "glyco_bond": "anti", "C5prime_xyz": [ -1.169, 8.692, 0.886 ], "P_xyz": [ 1.409, 9.051, 1.235 ], "form": "A", "ssZp": 4.582, "Dp": 4.647, "splay_angle": 18.259, "splay_distance": 2.994, "splay_ratio": 0.165, "d22": null, "d64": null, "eta": 171.168, "theta": -144.051, "eta_prime": -178.313, "theta_prime": -144.276, "eta_base": -142.415, "theta_base": -126.696, "v0": 3.332, "v1": -26.042, "v2": 37.625, "v3": -36.677, "v4": 21.030, "amplitude": 38.735, "phase_angle": 13.748, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.782, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 128.929, 164.774, 174.490 ], "x_axis": [ 0.523, -0.630, 0.574 ], "y_axis": [ -0.784, -0.619, 0.035 ], "z_axis": [ 0.334, -0.468, -0.818 ], "quaternion": [ 0.146, 0.860, -0.411, 0.264 ] } }, { "index": 1185, "index_chain": 1185, "chain_name": "A", "nt_resnum": 1263, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1263", "linked_nts": [ "///A/1262", "///A/1264" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-acceptor,splayed-apart", "alpha": -84.754, "beta": -176.722, "gamma": 59.930, "delta": 78.534, "epsilon": -132.725, "zeta": -85.224, "epsilon_zeta": -47.500, "bb_type": "BI", "chi": -158.037, "glyco_bond": "anti", "C5prime_xyz": [ -1.444, 8.780, 0.348 ], "P_xyz": [ 1.093, 9.414, 0.319 ], "form": ".", "ssZp": 4.325, "Dp": 4.764, "splay_angle": 102.730, "splay_distance": 13.725, "splay_ratio": 0.781, "d22": null, "d64": null, "eta": 162.901, "theta": -121.102, "eta_prime": 173.101, "theta_prime": -160.470, "eta_base": -156.651, "theta_base": 151.498, "v0": 2.325, "v1": -25.625, "v2": 37.823, "v3": -37.521, "v4": 22.194, "amplitude": 39.206, "phase_angle": 15.263, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.630, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 131.417, 164.466, 172.853 ], "x_axis": [ 0.005, -0.777, 0.630 ], "y_axis": [ -0.839, -0.346, -0.420 ], "z_axis": [ 0.544, -0.526, -0.653 ], "quaternion": [ 0.038, 0.708, -0.571, 0.415 ] } }, { "index": 1186, "index_chain": 1186, "chain_name": "A", "nt_resnum": 1264, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1264", "linked_nts": [ "///A/1263", "///A/1265" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 169.366, "beta": -177.278, "gamma": 36.198, "delta": 91.455, "epsilon": -172.178, "zeta": -68.966, "epsilon_zeta": -103.212, "bb_type": "BI", "chi": -102.644, "glyco_bond": "anti", "C5prime_xyz": [ -1.445, 7.642, -2.471 ], "P_xyz": [ 1.131, 7.955, -2.898 ], "form": ".", "ssZp": 1.692, "Dp": 4.294, "splay_angle": 19.437, "splay_distance": 3.664, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 18.609, "theta": -152.771, "eta_prime": 43.252, "theta_prime": -150.573, "eta_base": 21.381, "theta_base": -151.959, "v0": 9.817, "v1": -25.327, "v2": 30.431, "v3": -25.619, "v4": 10.123, "amplitude": 30.432, "phase_angle": 0.366, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.440, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 130.605, 166.145, 159.255 ], "x_axis": [ -0.890, 0.451, 0.074 ], "y_axis": [ -0.120, -0.387, 0.914 ], "z_axis": [ 0.441, 0.804, 0.398 ], "quaternion": [ 0.174, 0.158, 0.525, 0.818 ] } }, { "index": 1187, "index_chain": 1187, "chain_name": "A", "nt_resnum": 1265, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1265", "linked_nts": [ "///A/1264", "///A/1266" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,~C3'-endo,BI,non-pair-contact,hairpin-loop,ribose-zipper,cap-donor,phosphate", "alpha": -80.350, "beta": -163.164, "gamma": 49.179, "delta": 88.398, "epsilon": -151.946, "zeta": -92.515, "epsilon_zeta": -59.430, "bb_type": "BI", "chi": -80.691, "glyco_bond": "--", "C5prime_xyz": [ -2.282, 6.704, -3.259 ], "P_xyz": [ 0.100, 6.648, -4.375 ], "form": ".", "ssZp": -0.396, "Dp": 4.544, "splay_angle": 24.403, "splay_distance": 4.333, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": 171.749, "theta": -158.253, "eta_prime": 177.955, "theta_prime": -157.102, "eta_base": 178.715, "theta_base": -140.545, "v0": 5.716, "v1": -23.599, "v2": 31.643, "v3": -29.170, "v4": 14.886, "amplitude": 32.004, "phase_angle": 8.607, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.374, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 132.364, 167.491, 162.174 ], "x_axis": [ -0.965, 0.221, 0.140 ], "y_axis": [ 0.128, -0.069, 0.989 ], "z_axis": [ 0.229, 0.973, 0.039 ], "quaternion": [ 0.032, 0.128, 0.681, 0.720 ] } }, { "index": 1188, "index_chain": 1188, "chain_name": "A", "nt_resnum": 1266, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1266", "linked_nts": [ "///A/1265", "///A/1267" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,A-minor,ribose-zipper,phosphate", "alpha": -52.395, "beta": 148.139, "gamma": 59.311, "delta": 81.380, "epsilon": -119.709, "zeta": -52.277, "epsilon_zeta": -67.432, "bb_type": "--", "chi": -90.787, "glyco_bond": "anti", "C5prime_xyz": [ -2.478, 7.363, -2.950 ], "P_xyz": [ -0.854, 6.336, -4.707 ], "form": ".", "ssZp": -0.406, "Dp": 4.679, "splay_angle": 69.459, "splay_distance": 11.429, "splay_ratio": 0.570, "d22": null, "d64": null, "eta": 177.749, "theta": -61.125, "eta_prime": -174.333, "theta_prime": -59.976, "eta_base": -158.346, "theta_base": -48.166, "v0": 0.571, "v1": -22.961, "v2": 35.360, "v3": -36.018, "v4": 22.363, "amplitude": 37.128, "phase_angle": 17.757, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.461, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 132.459, 170.263, 165.503 ], "x_axis": [ -0.942, 0.127, 0.312 ], "y_axis": [ 0.324, 0.094, 0.941 ], "z_axis": [ 0.090, 0.987, -0.130 ], "quaternion": [ -0.075, 0.153, 0.736, 0.655 ] } }, { "index": 1189, "index_chain": 1189, "chain_name": "A", "nt_resnum": 1267, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1267", "linked_nts": [ "///A/1266", "///A/1268" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop", "alpha": 154.177, "beta": -136.193, "gamma": -174.556, "delta": 81.133, "epsilon": -147.557, "zeta": -69.445, "epsilon_zeta": -78.113, "bb_type": "BI", "chi": -177.523, "glyco_bond": "anti", "C5prime_xyz": [ -1.161, 8.397, 1.538 ], "P_xyz": [ 0.335, 9.946, 0.052 ], "form": "A", "ssZp": 4.705, "Dp": 4.696, "splay_angle": 24.179, "splay_distance": 3.799, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 172.691, "theta": -163.922, "eta_prime": -140.252, "theta_prime": -163.199, "eta_base": -97.894, "theta_base": -137.467, "v0": 5.894, "v1": -27.849, "v2": 38.126, "v3": -35.731, "v4": 18.852, "amplitude": 38.723, "phase_angle": 10.071, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.104, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 128.495, 164.986, 174.834 ], "x_axis": [ 0.507, -0.654, 0.561 ], "y_axis": [ 0.805, 0.592, -0.038 ], "z_axis": [ -0.307, 0.470, 0.827 ], "quaternion": [ 0.855, -0.149, -0.254, -0.427 ] } }, { "index": 1190, "index_chain": 1190, "chain_name": "A", "nt_resnum": 1268, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1268", "linked_nts": [ "///A/1267", "///A/1269" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -63.141, "beta": 176.497, "gamma": 57.311, "delta": 81.481, "epsilon": -152.316, "zeta": -47.198, "epsilon_zeta": -105.119, "bb_type": "BI", "chi": -168.786, "glyco_bond": "anti", "C5prime_xyz": [ -1.334, 8.693, 1.035 ], "P_xyz": [ 1.206, 9.061, 1.531 ], "form": ".", "ssZp": 4.522, "Dp": 4.574, "splay_angle": 27.210, "splay_distance": 4.777, "splay_ratio": 0.249, "d22": null, "d64": null, "eta": 174.003, "theta": -135.026, "eta_prime": -171.064, "theta_prime": -144.006, "eta_base": -131.710, "theta_base": -144.868, "v0": 0.578, "v1": -22.691, "v2": 34.925, "v3": -35.560, "v4": 22.109, "amplitude": 36.670, "phase_angle": 17.747, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.970, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 126.344, 164.588, 177.940 ], "x_axis": [ 0.873, -0.218, 0.437 ], "y_axis": [ 0.381, 0.864, -0.331 ], "z_axis": [ -0.305, 0.455, 0.837 ], "quaternion": [ 0.945, -0.208, -0.196, -0.158 ] } }, { "index": 1191, "index_chain": 1191, "chain_name": "A", "nt_resnum": 1269, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1269", "linked_nts": [ "///A/1268", "///A/1270" ], "nt_type": "RNA", "dbn": ">", "summary": "pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": -127.156, "beta": 129.282, "gamma": 146.540, "delta": 81.112, "epsilon": -118.176, "zeta": -77.893, "epsilon_zeta": -40.283, "bb_type": "--", "chi": 164.840, "glyco_bond": "anti", "C5prime_xyz": [ -1.838, 7.970, 2.415 ], "P_xyz": [ -0.669, 10.226, 1.783 ], "form": "A", "ssZp": 4.625, "Dp": 4.706, "splay_angle": 26.309, "splay_distance": 3.986, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": -176.216, "theta": -163.289, "eta_prime": -169.914, "theta_prime": -153.898, "eta_base": -153.632, "theta_base": -96.518, "v0": 1.640, "v1": -23.723, "v2": 35.543, "v3": -35.579, "v4": 21.416, "amplitude": 36.999, "phase_angle": 16.128, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.018, "filter_rmsd": 0.043, "frame": { "rmsd": 0.010, "origin": [ 123.312, 163.512, 181.470 ], "x_axis": [ 0.906, -0.046, 0.421 ], "y_axis": [ 0.251, 0.859, -0.446 ], "z_axis": [ -0.341, 0.510, 0.789 ], "quaternion": [ 0.943, -0.254, -0.202, -0.079 ] } }, { "index": 1192, "index_chain": 1192, "chain_name": "A", "nt_resnum": 1270, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1270", "linked_nts": [ "///A/1269", "///A/1271" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -65.618, "beta": 165.821, "gamma": 54.103, "delta": 83.919, "epsilon": -151.031, "zeta": -73.268, "epsilon_zeta": -77.764, "bb_type": "BI", "chi": -171.200, "glyco_bond": "anti", "C5prime_xyz": [ -1.210, 8.580, 1.230 ], "P_xyz": [ 1.369, 8.680, 1.689 ], "form": "A", "ssZp": 4.520, "Dp": 4.563, "splay_angle": 23.108, "splay_distance": 3.609, "splay_ratio": 0.201, "d22": 4.572, "d64": 4.376, "eta": 156.277, "theta": -144.295, "eta_prime": 178.660, "theta_prime": -145.757, "eta_base": -108.947, "theta_base": -129.186, "v0": 2.619, "v1": -23.366, "v2": 34.028, "v3": -33.486, "v4": 19.485, "amplitude": 35.139, "phase_angle": 14.450, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.502, "filter_rmsd": 0.063, "frame": { "rmsd": 0.008, "origin": [ 124.169, 164.738, 185.165 ], "x_axis": [ 0.728, 0.661, -0.179 ], "y_axis": [ -0.606, 0.500, -0.619 ], "z_axis": [ -0.320, 0.559, 0.764 ], "quaternion": [ 0.865, -0.341, -0.041, 0.366 ] } }, { "index": 1193, "index_chain": 1193, "chain_name": "A", "nt_resnum": 1271, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1271", "linked_nts": [ "///A/1270", "///A/1272" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack", "alpha": -77.838, "beta": -179.643, "gamma": 54.792, "delta": 81.428, "epsilon": -159.615, "zeta": -68.261, "epsilon_zeta": -91.355, "bb_type": "BI", "chi": -169.197, "glyco_bond": "anti", "C5prime_xyz": [ -1.342, 8.574, 1.073 ], "P_xyz": [ 1.201, 8.927, 1.580 ], "form": "A", "ssZp": 4.580, "Dp": 4.586, "splay_angle": 23.026, "splay_distance": 3.643, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 160.652, "theta": -149.612, "eta_prime": 172.694, "theta_prime": -150.023, "eta_base": -153.426, "theta_base": -131.791, "v0": 3.270, "v1": -25.354, "v2": 36.527, "v3": -35.615, "v4": 20.386, "amplitude": 37.594, "phase_angle": 13.687, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.837, "filter_rmsd": 0.098, "frame": { "rmsd": 0.009, "origin": [ 124.047, 165.461, 188.699 ], "x_axis": [ 0.368, 0.735, -0.569 ], "y_axis": [ -0.889, 0.099, -0.447 ], "z_axis": [ -0.273, 0.670, 0.690 ], "quaternion": [ 0.734, -0.381, 0.101, 0.553 ] } }, { "index": 1194, "index_chain": 1194, "chain_name": "A", "nt_resnum": 1272, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1272", "linked_nts": [ "///A/1271", "///A/1273" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -70.526, "beta": 179.100, "gamma": 55.573, "delta": 81.089, "epsilon": -152.480, "zeta": -72.638, "epsilon_zeta": -79.842, "bb_type": "BI", "chi": -174.698, "glyco_bond": "anti", "C5prime_xyz": [ -1.526, 8.595, 1.342 ], "P_xyz": [ 0.951, 9.023, 2.089 ], "form": "A", "ssZp": 4.575, "Dp": 4.586, "splay_angle": 23.519, "splay_distance": 3.656, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 168.950, "theta": -148.693, "eta_prime": 179.961, "theta_prime": -146.662, "eta_base": -146.993, "theta_base": -120.290, "v0": 0.539, "v1": -22.834, "v2": 35.124, "v3": -35.799, "v4": 22.235, "amplitude": 36.885, "phase_angle": 17.778, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.891, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 125.196, 167.290, 191.632 ], "x_axis": [ -0.063, 0.585, -0.809 ], "y_axis": [ -0.947, -0.291, -0.137 ], "z_axis": [ -0.315, 0.757, 0.572 ], "quaternion": [ 0.552, -0.405, 0.223, 0.694 ] } }, { "index": 1195, "index_chain": 1195, "chain_name": "A", "nt_resnum": 1273, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1273", "linked_nts": [ "///A/1272", "///A/1274" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -78.341, "beta": -179.453, "gamma": 59.584, "delta": 83.619, "epsilon": -151.872, "zeta": -69.532, "epsilon_zeta": -82.340, "bb_type": "BI", "chi": -173.218, "glyco_bond": "anti", "C5prime_xyz": [ -1.527, 8.559, 1.312 ], "P_xyz": [ 0.991, 8.880, 1.971 ], "form": "A", "ssZp": 4.549, "Dp": 4.573, "splay_angle": 24.264, "splay_distance": 3.856, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 165.928, "theta": -142.176, "eta_prime": 177.850, "theta_prime": -140.742, "eta_base": -142.256, "theta_base": -115.681, "v0": 2.152, "v1": -23.369, "v2": 34.420, "v3": -34.137, "v4": 20.186, "amplitude": 35.669, "phase_angle": 15.210, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.798, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 125.869, 170.457, 193.329 ], "x_axis": [ -0.524, 0.188, -0.831 ], "y_axis": [ -0.730, -0.602, 0.324 ], "z_axis": [ -0.440, 0.776, 0.452 ], "quaternion": [ 0.286, -0.396, 0.343, 0.803 ] } }, { "index": 1196, "index_chain": 1196, "chain_name": "A", "nt_resnum": 1274, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1274", "linked_nts": [ "///A/1273", "///A/1275" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -73.564, "beta": 175.178, "gamma": 67.512, "delta": 86.576, "epsilon": -159.899, "zeta": -45.180, "epsilon_zeta": -114.719, "bb_type": "BI", "chi": -170.604, "glyco_bond": "anti", "C5prime_xyz": [ -1.695, 8.697, 1.086 ], "P_xyz": [ 0.801, 9.185, 1.733 ], "form": ".", "ssZp": 4.086, "Dp": 4.228, "splay_angle": 27.748, "splay_distance": 4.307, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 173.659, "theta": -119.538, "eta_prime": -169.165, "theta_prime": -119.546, "eta_base": -128.812, "theta_base": -53.192, "v0": -3.906, "v1": -16.193, "v2": 28.720, "v3": -31.803, "v4": 22.558, "amplitude": 31.807, "phase_angle": 25.455, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.616, "filter_rmsd": 0.103, "frame": { "rmsd": 0.010, "origin": [ 125.351, 174.268, 193.619 ], "x_axis": [ -0.791, -0.265, -0.552 ], "y_axis": [ -0.286, -0.636, 0.717 ], "z_axis": [ -0.541, 0.725, 0.427 ], "quaternion": [ 0.006, -0.323, 0.427, 0.845 ] } }, { "index": 1197, "index_chain": 1197, "chain_name": "A", "nt_resnum": 1275, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1275", "linked_nts": [ "///A/1274", "///A/1276" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -95.644, "beta": -171.550, "gamma": 59.951, "delta": 93.791, "epsilon": -114.237, "zeta": -115.684, "epsilon_zeta": 1.447, "bb_type": "--", "chi": -137.511, "glyco_bond": "anti", "C5prime_xyz": [ -1.165, 8.616, -0.652 ], "P_xyz": [ 1.452, 8.785, -0.417 ], "form": ".", "ssZp": 2.974, "Dp": 4.398, "splay_angle": 21.203, "splay_distance": 3.952, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 168.821, "theta": -143.738, "eta_prime": -166.371, "theta_prime": -130.143, "eta_base": -85.438, "theta_base": -95.533, "v0": 3.114, "v1": -19.082, "v2": 26.845, "v3": -25.826, "v4": 14.414, "amplitude": 27.478, "phase_angle": 12.319, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.124, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 121.138, 174.381, 194.509 ], "x_axis": [ -0.579, -0.699, 0.420 ], "y_axis": [ 0.479, 0.124, 0.869 ], "z_axis": [ -0.659, 0.705, 0.263 ], "quaternion": [ -0.449, -0.091, 0.600, 0.655 ] } }, { "index": 1198, "index_chain": 1198, "chain_name": "A", "nt_resnum": 1276, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1276", "linked_nts": [ "///A/1275", "///A/1277" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -42.713, "beta": 129.554, "gamma": 71.743, "delta": 145.533, "epsilon": -134.764, "zeta": 164.709, "epsilon_zeta": 60.527, "bb_type": "BII", "chi": -93.787, "glyco_bond": "anti", "C5prime_xyz": [ -2.401, 7.941, -2.367 ], "P_xyz": [ -0.098, 7.284, -3.416 ], "form": ".", "ssZp": 1.571, "Dp": 1.758, "splay_angle": 48.646, "splay_distance": 7.972, "splay_ratio": 0.416, "d22": null, "d64": null, "eta": 174.841, "theta": 165.055, "eta_prime": -138.292, "theta_prime": 139.542, "eta_base": -109.508, "theta_base": 168.380, "v0": -23.118, "v1": 36.209, "v2": -34.696, "v3": 22.246, "v4": 0.369, "amplitude": 36.768, "phase_angle": 160.674, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 119.547, 176.265, 197.597 ], "x_axis": [ -0.284, -0.605, 0.743 ], "y_axis": [ 0.357, 0.653, 0.668 ], "z_axis": [ -0.890, 0.456, 0.031 ], "quaternion": [ 0.591, 0.090, -0.690, -0.407 ] } }, { "index": 1199, "index_chain": 1199, "chain_name": "A", "nt_resnum": 1277, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1277", "linked_nts": [ "///A/1276", "///A/1278" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate", "alpha": -70.041, "beta": 147.779, "gamma": 62.137, "delta": 147.410, "epsilon": -127.187, "zeta": -140.903, "epsilon_zeta": 13.716, "bb_type": "--", "chi": -149.416, "glyco_bond": "anti", "C5prime_xyz": [ -1.888, 8.712, 0.374 ], "P_xyz": [ 0.554, 8.817, 1.301 ], "form": ".", "ssZp": 1.185, "Dp": 1.446, "splay_angle": 47.949, "splay_distance": 8.139, "splay_ratio": 0.407, "d22": null, "d64": null, "eta": -167.078, "theta": -156.569, "eta_prime": -154.929, "theta_prime": 177.753, "eta_base": -139.758, "theta_base": -175.002, "v0": -22.803, "v1": 37.254, "v2": -36.667, "v3": 24.433, "v4": -1.265, "amplitude": 38.329, "phase_angle": 163.066, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4b", "suiteness": 0.409, "filter_rmsd": 0.041, "frame": { "rmsd": 0.011, "origin": [ 117.235, 182.617, 193.371 ], "x_axis": [ -0.380, -0.593, 0.710 ], "y_axis": [ 0.729, 0.281, 0.624 ], "z_axis": [ -0.570, 0.755, 0.325 ], "quaternion": [ 0.554, -0.059, -0.578, -0.597 ] } }, { "index": 1200, "index_chain": 1200, "chain_name": "A", "nt_resnum": 1278, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1278", "linked_nts": [ "///A/1277", "///A/1279" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -87.902, "beta": 95.326, "gamma": 143.345, "delta": 79.853, "epsilon": -152.053, "zeta": -68.227, "epsilon_zeta": -83.826, "bb_type": "BI", "chi": -171.151, "glyco_bond": "anti", "C5prime_xyz": [ -1.411, 8.611, 1.155 ], "P_xyz": [ -1.259, 10.181, -0.946 ], "form": "A", "ssZp": 4.633, "Dp": 4.655, "splay_angle": 25.127, "splay_distance": 4.076, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": -134.347, "theta": 170.212, "eta_prime": -142.369, "theta_prime": 179.522, "eta_base": -126.234, "theta_base": -155.795, "v0": 3.465, "v1": -26.516, "v2": 38.141, "v3": -37.127, "v4": 21.220, "amplitude": 39.238, "phase_angle": 13.585, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 117.720, 186.534, 186.253 ], "x_axis": [ -0.450, 0.887, -0.105 ], "y_axis": [ 0.641, 0.402, 0.653 ], "z_axis": [ 0.622, 0.227, -0.750 ], "quaternion": [ 0.225, 0.474, 0.807, 0.273 ] } }, { "index": 1201, "index_chain": 1201, "chain_name": "A", "nt_resnum": 1279, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1279", "linked_nts": [ "///A/1278", "///A/1280" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -67.839, "beta": 175.087, "gamma": 63.967, "delta": 78.475, "epsilon": -162.962, "zeta": -77.125, "epsilon_zeta": -85.838, "bb_type": "BI", "chi": -168.799, "glyco_bond": "anti", "C5prime_xyz": [ -1.558, 8.780, 0.987 ], "P_xyz": [ 0.955, 9.459, 1.228 ], "form": "A", "ssZp": 4.489, "Dp": 4.503, "splay_angle": 25.207, "splay_distance": 3.836, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 172.760, "theta": -162.092, "eta_prime": -172.109, "theta_prime": -161.858, "eta_base": -135.703, "theta_base": -139.252, "v0": -1.514, "v1": -22.239, "v2": 36.213, "v3": -37.996, "v4": 24.906, "amplitude": 38.719, "phase_angle": 20.728, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.789, "filter_rmsd": 0.062, "frame": { "rmsd": 0.006, "origin": [ 117.931, 187.053, 182.216 ], "x_axis": [ -0.073, 0.970, 0.234 ], "y_axis": [ 0.788, -0.088, 0.609 ], "z_axis": [ 0.611, 0.229, -0.758 ], "quaternion": [ 0.143, 0.666, 0.660, 0.317 ] } }, { "index": 1202, "index_chain": 1202, "chain_name": "A", "nt_resnum": 1280, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1280", "linked_nts": [ "///A/1279", "///A/1281" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -65.855, "beta": 161.587, "gamma": 70.679, "delta": 84.776, "epsilon": -152.336, "zeta": -83.212, "epsilon_zeta": -69.124, "bb_type": "BI", "chi": -172.969, "glyco_bond": "anti", "C5prime_xyz": [ -1.308, 8.499, 1.305 ], "P_xyz": [ 1.301, 8.740, 1.124 ], "form": ".", "ssZp": 4.572, "Dp": 4.591, "splay_angle": 24.132, "splay_distance": 3.942, "splay_ratio": 0.268, "d22": null, "d64": null, "eta": 176.255, "theta": -152.192, "eta_prime": -169.552, "theta_prime": -155.834, "eta_base": -133.592, "theta_base": -84.882, "v0": 4.689, "v1": -25.167, "v2": 34.905, "v3": -33.157, "v4": 18.005, "amplitude": 35.585, "phase_angle": 11.218, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.462, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 118.610, 187.558, 178.474 ], "x_axis": [ 0.417, 0.858, 0.301 ], "y_axis": [ 0.721, -0.514, 0.465 ], "z_axis": [ 0.554, 0.023, -0.832 ], "quaternion": [ 0.133, 0.831, 0.475, 0.257 ] } }, { "index": 1203, "index_chain": 1203, "chain_name": "A", "nt_resnum": 1281, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1281", "linked_nts": [ "///A/1280", "///A/1282" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -54.364, "beta": 173.271, "gamma": 51.824, "delta": 81.304, "epsilon": -146.073, "zeta": -65.947, "epsilon_zeta": -80.125, "bb_type": "BI", "chi": 22.291, "glyco_bond": "syn", "C5prime_xyz": [ -5.668, 4.036, -0.300 ], "P_xyz": [ -5.885, 1.446, -0.624 ], "form": ".", "ssZp": -4.214, "Dp": 4.468, "splay_angle": 40.741, "splay_distance": 6.288, "splay_ratio": 0.351, "d22": 3.470, "d64": 4.133, "eta": 179.290, "theta": -136.745, "eta_prime": -173.820, "theta_prime": -134.670, "eta_base": -95.310, "theta_base": -156.136, "v0": -3.651, "v1": -18.731, "v2": 32.633, "v3": -35.667, "v4": 24.793, "amplitude": 35.809, "phase_angle": 24.316, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.816, "filter_rmsd": 0.068, "frame": { "rmsd": 0.009, "origin": [ 122.086, 187.040, 176.689 ], "x_axis": [ -0.509, 0.842, -0.180 ], "y_axis": [ -0.737, -0.534, -0.415 ], "z_axis": [ -0.446, -0.078, 0.892 ], "quaternion": [ 0.461, -0.183, -0.144, 0.857 ] } }, { "index": 1204, "index_chain": 1204, "chain_name": "A", "nt_resnum": 1282, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1282", "linked_nts": [ "///A/1281", "///A/1283" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-canonical,helix,internal-loop", "alpha": -71.557, "beta": -172.875, "gamma": 46.348, "delta": 82.757, "epsilon": -151.229, "zeta": -66.967, "epsilon_zeta": -84.262, "bb_type": "BI", "chi": -174.186, "glyco_bond": "anti", "C5prime_xyz": [ -1.546, 8.577, 1.345 ], "P_xyz": [ 0.691, 8.956, 2.655 ], "form": "A", "ssZp": 4.458, "Dp": 4.509, "splay_angle": 22.035, "splay_distance": 3.528, "splay_ratio": 0.194, "d22": 4.395, "d64": 4.290, "eta": 163.740, "theta": -142.769, "eta_prime": 178.267, "theta_prime": -139.303, "eta_base": 169.415, "theta_base": -107.911, "v0": -0.286, "v1": -21.117, "v2": 33.232, "v3": -34.317, "v4": 21.860, "amplitude": 35.160, "phase_angle": 19.065, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.836, "filter_rmsd": 0.103, "frame": { "rmsd": 0.007, "origin": [ 121.200, 189.600, 171.015 ], "x_axis": [ 0.416, 0.007, 0.909 ], "y_axis": [ -0.188, -0.978, 0.094 ], "z_axis": [ 0.889, -0.210, -0.406 ], "quaternion": [ 0.091, 0.837, -0.054, 0.537 ] } }, { "index": 1205, "index_chain": 1205, "chain_name": "A", "nt_resnum": 1283, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1283", "linked_nts": [ "///A/1282", "///A/1284" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end,coaxial-stack,internal-loop", "alpha": -67.726, "beta": -177.898, "gamma": 45.778, "delta": 81.054, "epsilon": -171.428, "zeta": -78.575, "epsilon_zeta": -92.853, "bb_type": "BI", "chi": -161.075, "glyco_bond": "anti", "C5prime_xyz": [ -1.414, 8.716, 0.595 ], "P_xyz": [ 1.063, 9.259, 1.250 ], "form": "A", "ssZp": 4.367, "Dp": 4.432, "splay_angle": 19.530, "splay_distance": 3.281, "splay_ratio": 0.178, "d22": null, "d64": null, "eta": 162.044, "theta": -136.834, "eta_prime": 178.291, "theta_prime": -144.359, "eta_base": -135.312, "theta_base": -121.575, "v0": 0.984, "v1": -23.045, "v2": 35.130, "v3": -35.532, "v4": 21.804, "amplitude": 36.759, "phase_angle": 17.122, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.867, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 124.539, 190.507, 170.328 ], "x_axis": [ 0.184, -0.574, 0.798 ], "y_axis": [ -0.382, -0.790, -0.480 ], "z_axis": [ 0.906, -0.217, -0.364 ], "quaternion": [ -0.086, 0.764, -0.313, 0.557 ] } }, { "index": 1206, "index_chain": 1206, "chain_name": "A", "nt_resnum": 1284, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1284", "linked_nts": [ "///A/1283", "///A/1285" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 159.323, "beta": -153.141, "gamma": 163.598, "delta": 80.804, "epsilon": -131.180, "zeta": -84.558, "epsilon_zeta": -46.621, "bb_type": "BI", "chi": 178.068, "glyco_bond": "anti", "C5prime_xyz": [ -1.363, 8.267, 1.787 ], "P_xyz": [ 0.610, 9.676, 0.820 ], "form": "A", "ssZp": 4.764, "Dp": 4.757, "splay_angle": 25.479, "splay_distance": 3.957, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 159.492, "theta": -157.226, "eta_prime": 174.783, "theta_prime": -154.919, "eta_base": -142.238, "theta_base": -126.850, "v0": 4.392, "v1": -26.272, "v2": 37.078, "v3": -35.545, "v4": 19.654, "amplitude": 37.925, "phase_angle": 12.134, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.549, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 127.742, 190.952, 170.888 ], "x_axis": [ -0.037, -0.881, 0.471 ], "y_axis": [ -0.331, -0.434, -0.838 ], "z_axis": [ 0.943, -0.187, -0.276 ], "quaternion": [ -0.251, 0.647, -0.469, 0.547 ] } }, { "index": 1207, "index_chain": 1207, "chain_name": "A", "nt_resnum": 1285, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1285", "linked_nts": [ "///A/1284", "///A/1286" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -49.042, "beta": 156.897, "gamma": 54.911, "delta": 80.540, "epsilon": -139.499, "zeta": -77.597, "epsilon_zeta": -61.902, "bb_type": "BI", "chi": -176.193, "glyco_bond": "anti", "C5prime_xyz": [ -1.776, 8.559, 1.442 ], "P_xyz": [ 0.755, 8.975, 1.857 ], "form": "A", "ssZp": 4.569, "Dp": 4.615, "splay_angle": 22.279, "splay_distance": 3.602, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 172.713, "theta": -140.656, "eta_prime": -170.999, "theta_prime": -140.564, "eta_base": -128.207, "theta_base": -116.329, "v0": -0.358, "v1": -22.419, "v2": 35.432, "v3": -36.679, "v4": 23.350, "amplitude": 37.518, "phase_angle": 19.197, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.600, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 131.441, 190.171, 172.055 ], "x_axis": [ -0.249, -0.967, -0.063 ], "y_axis": [ -0.294, 0.137, -0.946 ], "z_axis": [ 0.923, -0.217, -0.318 ], "quaternion": [ 0.378, -0.483, 0.653, -0.445 ] } }, { "index": 1208, "index_chain": 1208, "chain_name": "A", "nt_resnum": 1286, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1286", "linked_nts": [ "///A/1285", "///A/1287" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -57.246, "beta": 179.418, "gamma": 38.896, "delta": 82.864, "epsilon": 178.533, "zeta": -82.640, "epsilon_zeta": -98.827, "bb_type": "BI", "chi": -161.702, "glyco_bond": "anti", "C5prime_xyz": [ -1.531, 8.727, 0.656 ], "P_xyz": [ 0.811, 9.322, 1.644 ], "form": "A", "ssZp": 4.152, "Dp": 4.221, "splay_angle": 20.363, "splay_distance": 3.379, "splay_ratio": 0.182, "d22": null, "d64": null, "eta": 163.275, "theta": -142.227, "eta_prime": 177.668, "theta_prime": -138.934, "eta_base": -141.399, "theta_base": -114.033, "v0": -0.726, "v1": -20.627, "v2": 32.866, "v3": -34.271, "v4": 22.087, "amplitude": 34.936, "phase_angle": 19.820, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.602, "filter_rmsd": 0.043, "frame": { "rmsd": 0.009, "origin": [ 134.537, 188.447, 172.705 ], "x_axis": [ -0.613, -0.605, -0.509 ], "y_axis": [ -0.069, 0.682, -0.728 ], "z_axis": [ 0.787, -0.411, -0.460 ], "quaternion": [ 0.390, -0.203, 0.830, -0.343 ] } }, { "index": 1209, "index_chain": 1209, "chain_name": "A", "nt_resnum": 1287, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1287", "linked_nts": [ "///A/1286", "///A/1288" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": 158.679, "beta": -138.419, "gamma": -178.929, "delta": 148.435, "epsilon": -78.111, "zeta": -116.595, "epsilon_zeta": 38.485, "bb_type": "--", "chi": -160.893, "glyco_bond": "anti", "C5prime_xyz": [ -2.255, 8.584, 0.974 ], "P_xyz": [ 0.077, 9.674, 0.522 ], "form": ".", "ssZp": 0.036, "Dp": 0.376, "splay_angle": 115.263, "splay_distance": 16.160, "splay_ratio": 0.845, "d22": null, "d64": null, "eta": -110.404, "theta": -118.557, "eta_prime": -116.311, "theta_prime": -159.845, "eta_base": -91.892, "theta_base": 167.925, "v0": -24.056, "v1": 38.498, "v2": -37.398, "v3": 24.457, "v4": -0.520, "amplitude": 39.340, "phase_angle": 161.919, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.386, "filter_rmsd": 0.043, "frame": { "rmsd": 0.010, "origin": [ 136.431, 185.699, 172.172 ], "x_axis": [ -0.602, -0.157, -0.783 ], "y_axis": [ 0.309, 0.858, -0.410 ], "z_axis": [ 0.736, -0.489, -0.468 ], "quaternion": [ 0.444, 0.044, 0.855, -0.263 ] } }, { "index": 1210, "index_chain": 1210, "chain_name": "A", "nt_resnum": 1288, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1288", "linked_nts": [ "///A/1287", "///A/1289" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,internal-loop,phosphate,splayed-apart", "alpha": 67.933, "beta": -161.981, "gamma": 73.110, "delta": 149.428, "epsilon": -112.827, "zeta": -88.798, "epsilon_zeta": -24.029, "bb_type": "--", "chi": -111.574, "glyco_bond": "anti", "C5prime_xyz": [ -2.105, 8.394, -1.590 ], "P_xyz": [ 0.338, 9.253, -1.183 ], "form": ".", "ssZp": 1.060, "Dp": 1.112, "splay_angle": 132.348, "splay_distance": 18.673, "splay_ratio": 0.915, "d22": null, "d64": null, "eta": -34.750, "theta": -32.577, "eta_prime": 42.300, "theta_prime": -64.844, "eta_base": 57.006, "theta_base": -46.385, "v0": -22.301, "v1": 37.237, "v2": -37.119, "v3": 25.192, "v4": -2.029, "amplitude": 38.576, "phase_angle": 164.205, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4p", "suiteness": 0.237, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 145.409, 193.774, 182.911 ], "x_axis": [ -0.626, 0.773, 0.103 ], "y_axis": [ -0.371, -0.179, -0.911 ], "z_axis": [ -0.686, -0.608, 0.399 ], "quaternion": [ 0.385, -0.197, -0.512, 0.742 ] } }, { "index": 1211, "index_chain": 1211, "chain_name": "A", "nt_resnum": 1289, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1289", "linked_nts": [ "///A/1288", "///A/1290" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": 75.565, "beta": 139.812, "gamma": -40.609, "delta": 85.041, "epsilon": -175.474, "zeta": -105.829, "epsilon_zeta": -69.645, "bb_type": "BI", "chi": -148.068, "glyco_bond": "anti", "C5prime_xyz": [ -1.477, 8.754, -0.175 ], "P_xyz": [ -0.040, 10.256, 1.409 ], "form": ".", "ssZp": 3.907, "Dp": 4.220, "splay_angle": 40.848, "splay_distance": 6.358, "splay_ratio": 0.349, "d22": null, "d64": null, "eta": 174.400, "theta": 149.622, "eta_prime": -146.218, "theta_prime": 169.248, "eta_base": -128.879, "theta_base": 171.239, "v0": -1.461, "v1": -19.009, "v2": 30.983, "v3": -32.796, "v4": 21.632, "amplitude": 33.220, "phase_angle": 21.144, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.009, "origin": [ 138.030, 184.049, 168.782 ], "x_axis": [ 0.281, 0.708, -0.648 ], "y_axis": [ 0.619, 0.382, 0.687 ], "z_axis": [ 0.733, -0.594, -0.331 ], "quaternion": [ 0.577, 0.555, 0.598, 0.039 ] } }, { "index": 1212, "index_chain": 1212, "chain_name": "A", "nt_resnum": 1290, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1290", "linked_nts": [ "///A/1289", "///A/1291" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,phosphate,splayed-apart", "alpha": -54.172, "beta": 172.543, "gamma": 77.383, "delta": 150.516, "epsilon": -101.916, "zeta": -68.176, "epsilon_zeta": -33.740, "bb_type": "--", "chi": -100.961, "glyco_bond": "anti", "C5prime_xyz": [ -2.284, 8.119, -2.044 ], "P_xyz": [ 0.246, 8.513, -2.629 ], "form": ".", "ssZp": 0.830, "Dp": 0.886, "splay_angle": 113.583, "splay_distance": 15.742, "splay_ratio": 0.838, "d22": null, "d64": null, "eta": -140.177, "theta": -49.198, "eta_prime": -130.662, "theta_prime": -68.156, "eta_base": -158.096, "theta_base": -26.901, "v0": -22.023, "v1": 37.380, "v2": -37.576, "v3": 25.812, "v4": -2.568, "amplitude": 38.905, "phase_angle": 164.984, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.078, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 138.281, 177.941, 170.533 ], "x_axis": [ 0.340, 0.421, -0.841 ], "y_axis": [ 0.860, 0.222, 0.459 ], "z_axis": [ 0.379, -0.880, -0.286 ], "quaternion": [ 0.565, 0.593, 0.540, -0.195 ] } }, { "index": 1213, "index_chain": 1213, "chain_name": "A", "nt_resnum": 1291, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1291", "linked_nts": [ "///A/1290", "///A/1292" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": -73.369, "beta": -172.607, "gamma": 75.773, "delta": 145.427, "epsilon": -120.655, "zeta": -144.380, "epsilon_zeta": 23.725, "bb_type": "--", "chi": -134.249, "glyco_bond": "anti", "C5prime_xyz": [ -1.303, 8.533, -0.441 ], "P_xyz": [ 1.210, 8.565, 0.294 ], "form": ".", "ssZp": 1.625, "Dp": 1.697, "splay_angle": 128.647, "splay_distance": 17.182, "splay_ratio": 0.902, "d22": null, "d64": null, "eta": -178.896, "theta": -117.647, "eta_prime": -121.985, "theta_prime": -177.374, "eta_base": -120.519, "theta_base": 169.003, "v0": -15.507, "v1": 29.426, "v2": -31.373, "v3": 23.217, "v4": -5.022, "amplitude": 31.839, "phase_angle": 170.191, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.282, "filter_rmsd": 0.041, "frame": { "rmsd": 0.020, "origin": [ 151.447, 180.432, 178.795 ], "x_axis": [ -0.564, 0.823, 0.070 ], "y_axis": [ -0.826, -0.564, -0.022 ], "z_axis": [ 0.022, -0.070, 0.997 ], "quaternion": [ 0.466, 0.026, -0.026, 0.884 ] } }, { "index": 1214, "index_chain": 1214, "chain_name": "A", "nt_resnum": 1292, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1292", "linked_nts": [ "///A/1291", "///A/1293" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BII,non-pair-contact,junction-loop,cap-donor,phosphate,splayed-apart", "alpha": 85.026, "beta": -151.927, "gamma": 55.310, "delta": 146.328, "epsilon": -84.411, "zeta": 176.476, "epsilon_zeta": 99.112, "bb_type": "BII", "chi": -69.728, "glyco_bond": "--", "C5prime_xyz": [ -2.798, 6.875, -3.080 ], "P_xyz": [ -0.559, 7.983, -3.845 ], "form": ".", "ssZp": -0.292, "Dp": 0.767, "splay_angle": 23.888, "splay_distance": 4.229, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 10.716, "theta": -145.845, "eta_prime": 36.676, "theta_prime": -160.688, "eta_base": 22.106, "theta_base": -108.731, "v0": -19.218, "v1": 33.437, "v2": -34.249, "v3": 23.965, "v4": -3.207, "amplitude": 35.236, "phase_angle": 166.409, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4p", "suiteness": 0.650, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 151.898, 163.279, 179.678 ], "x_axis": [ -0.565, -0.366, -0.740 ], "y_axis": [ -0.188, 0.930, -0.316 ], "z_axis": [ 0.803, -0.040, -0.594 ], "quaternion": [ 0.439, -0.157, 0.879, -0.101 ] } }, { "index": 1215, "index_chain": 1215, "chain_name": "A", "nt_resnum": 1293, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1293", "linked_nts": [ "///A/1292", "///A/1294" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-pair-contact,junction-loop,A-minor,cap-acceptor,phosphate,splayed-apart", "alpha": 51.795, "beta": -121.011, "gamma": -153.639, "delta": 147.289, "epsilon": -88.705, "zeta": -60.387, "epsilon_zeta": -28.318, "bb_type": "--", "chi": -88.050, "glyco_bond": "--", "C5prime_xyz": [ -2.542, 7.633, -2.546 ], "P_xyz": [ -2.109, 6.769, -4.975 ], "form": ".", "ssZp": 0.309, "Dp": 0.666, "splay_angle": 111.279, "splay_distance": 16.287, "splay_ratio": 0.826, "d22": null, "d64": null, "eta": -132.453, "theta": -107.083, "eta_prime": -149.441, "theta_prime": -87.746, "eta_base": -112.186, "theta_base": -45.104, "v0": -21.356, "v1": 35.673, "v2": -35.652, "v3": 24.192, "v4": -2.009, "amplitude": 37.032, "phase_angle": 164.307, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 153.953, 165.847, 177.018 ], "x_axis": [ -0.452, 0.173, -0.875 ], "y_axis": [ 0.354, 0.935, 0.002 ], "z_axis": [ 0.819, -0.308, -0.484 ], "quaternion": [ 0.500, 0.155, 0.847, -0.090 ] } }, { "index": 1216, "index_chain": 1216, "chain_name": "A", "nt_resnum": 1294, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1294", "linked_nts": [ "///A/1293", "///A/1295" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,A-minor,phosphate,splayed-apart", "alpha": -74.955, "beta": 172.355, "gamma": 77.010, "delta": 84.249, "epsilon": -160.345, "zeta": 73.989, "epsilon_zeta": 125.666, "bb_type": "--", "chi": -157.542, "glyco_bond": "anti", "C5prime_xyz": [ -1.770, 8.812, 0.345 ], "P_xyz": [ 0.736, 9.514, 0.108 ], "form": ".", "ssZp": 4.115, "Dp": 4.287, "splay_angle": 150.186, "splay_distance": 17.569, "splay_ratio": 0.966, "d22": null, "d64": null, "eta": 157.646, "theta": 27.992, "eta_prime": -151.681, "theta_prime": 8.632, "eta_base": -142.267, "theta_base": -134.489, "v0": -4.801, "v1": -16.515, "v2": 30.133, "v3": -33.816, "v4": 24.384, "amplitude": 33.707, "phase_angle": 26.622, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.193, "filter_rmsd": 0.041, "frame": { "rmsd": 0.012, "origin": [ 157.639, 181.523, 179.458 ], "x_axis": [ -0.764, -0.087, 0.639 ], "y_axis": [ 0.278, -0.938, 0.205 ], "z_axis": [ 0.582, 0.335, 0.741 ], "quaternion": [ -0.098, 0.329, 0.146, 0.928 ] } }, { "index": 1217, "index_chain": 1217, "chain_name": "A", "nt_resnum": 1295, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1295", "linked_nts": [ "///A/1294", "///A/1296" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": 36.494, "beta": 134.266, "gamma": 36.981, "delta": 82.183, "epsilon": -153.736, "zeta": 65.234, "epsilon_zeta": 141.030, "bb_type": "--", "chi": -154.130, "glyco_bond": "anti", "C5prime_xyz": [ -1.536, 8.804, 0.139 ], "P_xyz": [ 1.078, 8.859, 0.172 ], "form": ".", "ssZp": 4.166, "Dp": 4.482, "splay_angle": 153.180, "splay_distance": 19.016, "splay_ratio": 0.973, "d22": null, "d64": null, "eta": -106.954, "theta": 23.073, "eta_prime": -71.363, "theta_prime": 5.065, "eta_base": 74.791, "theta_base": -35.695, "v0": -2.202, "v1": -19.693, "v2": 32.716, "v3": -35.002, "v4": 23.510, "amplitude": 35.327, "phase_angle": 22.166, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "5d", "suiteness": 0.230, "filter_rmsd": 0.103, "frame": { "rmsd": 0.005, "origin": [ 172.701, 175.235, 185.957 ], "x_axis": [ 0.275, 0.805, -0.525 ], "y_axis": [ -0.895, 0.015, -0.446 ], "z_axis": [ -0.351, 0.593, 0.725 ], "quaternion": [ 0.710, -0.366, 0.061, 0.599 ] } }, { "index": 1218, "index_chain": 1218, "chain_name": "A", "nt_resnum": 1296, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1296", "linked_nts": [ "///A/1295", "///A/1297" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": 59.919, "beta": 161.602, "gamma": -65.066, "delta": 85.137, "epsilon": -116.203, "zeta": -91.778, "epsilon_zeta": -24.424, "bb_type": "--", "chi": 167.054, "glyco_bond": "anti", "C5prime_xyz": [ -1.546, 8.044, 2.324 ], "P_xyz": [ -1.240, 9.077, 4.703 ], "form": "A", "ssZp": 4.562, "Dp": 4.668, "splay_angle": 22.330, "splay_distance": 3.427, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": -159.626, "theta": -168.432, "eta_prime": -133.124, "theta_prime": -152.524, "eta_base": -69.608, "theta_base": -107.452, "v0": 3.466, "v1": -23.946, "v2": 34.085, "v3": -33.035, "v4": 18.692, "amplitude": 34.989, "phase_angle": 13.050, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 154.042, 178.824, 185.198 ], "x_axis": [ -0.433, -0.893, -0.120 ], "y_axis": [ 0.876, -0.385, -0.291 ], "z_axis": [ 0.214, -0.231, 0.949 ], "quaternion": [ 0.532, -0.028, 0.157, -0.832 ] } }, { "index": 1219, "index_chain": 1219, "chain_name": "A", "nt_resnum": 1297, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1297", "linked_nts": [ "///A/1296", "///A/1298" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -70.187, "beta": 164.768, "gamma": 55.745, "delta": 84.314, "epsilon": -153.833, "zeta": -67.597, "epsilon_zeta": -86.236, "bb_type": "BI", "chi": -165.606, "glyco_bond": "anti", "C5prime_xyz": [ -1.170, 8.664, 0.887 ], "P_xyz": [ 1.437, 8.768, 1.107 ], "form": "A", "ssZp": 4.436, "Dp": 4.530, "splay_angle": 23.550, "splay_distance": 3.738, "splay_ratio": 0.205, "d22": 4.508, "d64": 4.513, "eta": 157.431, "theta": -139.497, "eta_prime": 173.513, "theta_prime": -141.192, "eta_base": -145.840, "theta_base": -118.036, "v0": 2.350, "v1": -23.304, "v2": 34.213, "v3": -33.774, "v4": 19.846, "amplitude": 35.399, "phase_angle": 14.873, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.360, "filter_rmsd": 0.063, "frame": { "rmsd": 0.008, "origin": [ 153.246, 178.619, 188.525 ], "x_axis": [ 0.207, -0.916, -0.344 ], "y_axis": [ 0.963, 0.252, -0.092 ], "z_axis": [ 0.171, -0.312, 0.935 ], "quaternion": [ 0.773, 0.071, 0.166, -0.607 ] } }, { "index": 1220, "index_chain": 1220, "chain_name": "A", "nt_resnum": 1298, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1298", "linked_nts": [ "///A/1297", "///A/1299" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -75.683, "beta": 177.536, "gamma": 61.712, "delta": 81.618, "epsilon": -148.578, "zeta": -69.190, "epsilon_zeta": -79.388, "bb_type": "BI", "chi": -161.082, "glyco_bond": "anti", "C5prime_xyz": [ -1.292, 8.781, 0.575 ], "P_xyz": [ 1.297, 9.193, 0.697 ], "form": "A", "ssZp": 4.414, "Dp": 4.594, "splay_angle": 20.792, "splay_distance": 3.414, "splay_ratio": 0.183, "d22": null, "d64": null, "eta": 168.272, "theta": -141.855, "eta_prime": -176.979, "theta_prime": -143.218, "eta_base": -136.986, "theta_base": -122.264, "v0": 0.701, "v1": -22.813, "v2": 34.993, "v3": -35.496, "v4": 21.972, "amplitude": 36.691, "phase_angle": 17.499, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.804, "filter_rmsd": 0.061, "frame": { "rmsd": 0.008, "origin": [ 152.627, 176.601, 191.610 ], "x_axis": [ 0.699, -0.616, -0.363 ], "y_axis": [ 0.697, 0.702, 0.150 ], "z_axis": [ 0.163, -0.358, 0.920 ], "quaternion": [ 0.911, 0.139, 0.144, -0.360 ] } }, { "index": 1221, "index_chain": 1221, "chain_name": "A", "nt_resnum": 1299, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1299", "linked_nts": [ "///A/1298", "///A/1300" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor", "alpha": -76.937, "beta": 173.389, "gamma": 60.262, "delta": 80.643, "epsilon": -159.825, "zeta": -66.970, "epsilon_zeta": -92.855, "bb_type": "BI", "chi": -165.590, "glyco_bond": "anti", "C5prime_xyz": [ -1.692, 8.808, 0.802 ], "P_xyz": [ 0.805, 9.519, 1.119 ], "form": "A", "ssZp": 4.392, "Dp": 4.458, "splay_angle": 21.992, "splay_distance": 3.534, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 160.486, "theta": -148.840, "eta_prime": 176.028, "theta_prime": -149.575, "eta_base": -146.021, "theta_base": -120.820, "v0": -2.381, "v1": -20.412, "v2": 34.078, "v3": -36.393, "v4": 24.482, "amplitude": 36.811, "phase_angle": 22.221, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.826, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 152.675, 174.007, 193.829 ], "x_axis": [ 0.859, -0.050, -0.509 ], "y_axis": [ 0.271, 0.889, 0.369 ], "z_axis": [ 0.434, -0.455, 0.778 ], "quaternion": [ 0.939, 0.220, 0.251, -0.085 ] } }, { "index": 1222, "index_chain": 1222, "chain_name": "A", "nt_resnum": 1300, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1300", "linked_nts": [ "///A/1299", "///A/1301" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor", "alpha": -74.886, "beta": 177.422, "gamma": 59.340, "delta": 81.456, "epsilon": -153.643, "zeta": -69.607, "epsilon_zeta": -84.036, "bb_type": "BI", "chi": -163.124, "glyco_bond": "anti", "C5prime_xyz": [ -1.502, 8.767, 0.693 ], "P_xyz": [ 1.043, 9.322, 0.991 ], "form": "A", "ssZp": 4.421, "Dp": 4.544, "splay_angle": 20.775, "splay_distance": 3.348, "splay_ratio": 0.183, "d22": null, "d64": null, "eta": 167.217, "theta": -146.069, "eta_prime": -179.156, "theta_prime": -145.699, "eta_base": -135.542, "theta_base": -118.736, "v0": 0.310, "v1": -22.485, "v2": 34.805, "v3": -35.577, "v4": 22.248, "amplitude": 36.619, "phase_angle": 18.109, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.824, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 154.270, 171.237, 195.337 ], "x_axis": [ 0.847, 0.475, -0.239 ], "y_axis": [ -0.245, 0.747, 0.618 ], "z_axis": [ 0.472, -0.464, 0.749 ], "quaternion": [ 0.914, 0.296, 0.194, 0.197 ] } }, { "index": 1223, "index_chain": 1223, "chain_name": "A", "nt_resnum": 1301, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1301", "linked_nts": [ "///A/1300", "///A/1302" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -69.754, "beta": 169.217, "gamma": 62.872, "delta": 81.315, "epsilon": -157.546, "zeta": -47.548, "epsilon_zeta": -109.997, "bb_type": "BI", "chi": -159.831, "glyco_bond": "anti", "C5prime_xyz": [ -1.625, 8.775, 0.473 ], "P_xyz": [ 0.912, 9.385, 0.363 ], "form": ".", "ssZp": 4.353, "Dp": 4.503, "splay_angle": 29.392, "splay_distance": 5.112, "splay_ratio": 0.264, "d22": null, "d64": null, "eta": 167.879, "theta": -138.678, "eta_prime": -175.251, "theta_prime": -150.552, "eta_base": -132.459, "theta_base": -148.010, "v0": -1.600, "v1": -21.155, "v2": 34.501, "v3": -36.351, "v4": 23.942, "amplitude": 36.953, "phase_angle": 20.990, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.824, "filter_rmsd": 0.096, "frame": { "rmsd": 0.012, "origin": [ 156.734, 169.291, 196.499 ], "x_axis": [ 0.601, 0.788, 0.134 ], "y_axis": [ -0.594, 0.328, 0.735 ], "z_axis": [ 0.535, -0.521, 0.665 ], "quaternion": [ 0.805, 0.390, 0.125, 0.429 ] } }, { "index": 1224, "index_chain": 1224, "chain_name": "A", "nt_resnum": 1302, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1302", "linked_nts": [ "///A/1301", "///A/1303" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop", "alpha": -126.936, "beta": 128.391, "gamma": 149.227, "delta": 82.996, "epsilon": -107.746, "zeta": -85.373, "epsilon_zeta": -22.373, "bb_type": "--", "chi": 155.868, "glyco_bond": "anti", "C5prime_xyz": [ -2.230, 7.772, 2.700 ], "P_xyz": [ -0.980, 10.060, 2.507 ], "form": "A", "ssZp": 4.207, "Dp": 4.507, "splay_angle": 23.213, "splay_distance": 3.623, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": -169.138, "theta": -162.975, "eta_prime": -167.421, "theta_prime": -151.648, "eta_base": -149.537, "theta_base": -104.086, "v0": -2.337, "v1": -19.266, "v2": 32.202, "v3": -34.483, "v4": 23.237, "amplitude": 34.823, "phase_angle": 22.371, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.040, "filter_rmsd": 0.046, "frame": { "rmsd": 0.015, "origin": [ 160.347, 165.709, 197.001 ], "x_axis": [ 0.388, 0.914, 0.122 ], "y_axis": [ -0.811, 0.275, 0.516 ], "z_axis": [ 0.438, -0.299, 0.848 ], "quaternion": [ 0.792, 0.257, 0.100, 0.544 ] } }, { "index": 1225, "index_chain": 1225, "chain_name": "A", "nt_resnum": 1303, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1303", "linked_nts": [ "///A/1302", "///A/1304" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -65.436, "beta": 164.372, "gamma": 52.412, "delta": 88.191, "epsilon": -150.510, "zeta": -69.716, "epsilon_zeta": -80.794, "bb_type": "BI", "chi": -163.499, "glyco_bond": "anti", "C5prime_xyz": [ -1.532, 8.713, 0.732 ], "P_xyz": [ 0.982, 9.005, 1.383 ], "form": ".", "ssZp": 4.049, "Dp": 4.267, "splay_angle": 20.309, "splay_distance": 3.236, "splay_ratio": 0.182, "d22": null, "d64": null, "eta": 155.052, "theta": -134.918, "eta_prime": 177.947, "theta_prime": -133.169, "eta_base": -124.633, "theta_base": -76.677, "v0": -2.624, "v1": -16.769, "v2": 28.526, "v3": -30.892, "v4": 21.176, "amplitude": 31.073, "phase_angle": 23.362, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.215, "filter_rmsd": 0.103, "frame": { "rmsd": 0.012, "origin": [ 163.043, 165.449, 199.408 ], "x_axis": [ -0.403, 0.830, 0.387 ], "y_axis": [ -0.839, -0.504, 0.207 ], "z_axis": [ 0.367, -0.241, 0.899 ], "quaternion": [ 0.498, 0.225, -0.010, 0.837 ] } }, { "index": 1226, "index_chain": 1226, "chain_name": "A", "nt_resnum": 1304, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1304", "linked_nts": [ "///A/1303", "///A/1305" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -75.065, "beta": -175.480, "gamma": 49.967, "delta": 93.685, "epsilon": 179.550, "zeta": 52.244, "epsilon_zeta": 127.306, "bb_type": "--", "chi": -131.436, "glyco_bond": "anti", "C5prime_xyz": [ -0.815, 8.389, -0.948 ], "P_xyz": [ 1.797, 8.258, -0.689 ], "form": ".", "ssZp": 3.294, "Dp": 4.130, "splay_angle": 27.830, "splay_distance": 4.545, "splay_ratio": 0.244, "d22": null, "d64": null, "eta": 161.486, "theta": -8.093, "eta_prime": -176.149, "theta_prime": -53.394, "eta_base": -105.635, "theta_base": -97.285, "v0": 9.083, "v1": -23.901, "v2": 28.841, "v3": -24.486, "v4": 9.843, "amplitude": 28.845, "phase_angle": 0.868, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.514, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 162.741, 165.435, 202.629 ], "x_axis": [ -0.934, 0.103, 0.343 ], "y_axis": [ -0.093, -0.995, 0.045 ], "z_axis": [ 0.346, 0.010, 0.938 ], "quaternion": [ 0.050, 0.175, 0.014, 0.983 ] } }, { "index": 1227, "index_chain": 1227, "chain_name": "A", "nt_resnum": 1305, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1305", "linked_nts": [ "///A/1304", "///A/1306" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate", "alpha": 92.816, "beta": 176.930, "gamma": 108.700, "delta": 148.764, "epsilon": -114.284, "zeta": 169.654, "epsilon_zeta": 76.062, "bb_type": "BII", "chi": -125.749, "glyco_bond": "anti", "C5prime_xyz": [ -1.765, 8.564, -0.874 ], "P_xyz": [ 0.776, 8.808, -1.433 ], "form": ".", "ssZp": 1.284, "Dp": 1.266, "splay_angle": 47.108, "splay_distance": 7.774, "splay_ratio": 0.401, "d22": null, "d64": null, "eta": 60.157, "theta": 152.925, "eta_prime": 128.112, "theta_prime": 131.405, "eta_base": 125.414, "theta_base": 159.479, "v0": -21.255, "v1": 35.880, "v2": -35.994, "v3": 24.604, "v4": -2.302, "amplitude": 37.310, "phase_angle": 164.737, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.015, "origin": [ 162.445, 164.623, 207.091 ], "x_axis": [ 0.564, 0.329, -0.758 ], "y_axis": [ 0.205, -0.944, -0.258 ], "z_axis": [ -0.800, -0.010, -0.600 ], "quaternion": [ -0.070, 0.881, 0.152, -0.442 ] } }, { "index": 1228, "index_chain": 1228, "chain_name": "A", "nt_resnum": 1306, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1306", "linked_nts": [ "///A/1305", "///A/1307" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate", "alpha": -79.006, "beta": 77.462, "gamma": 163.666, "delta": 149.100, "epsilon": -166.113, "zeta": 150.465, "epsilon_zeta": 43.422, "bb_type": "--", "chi": -106.762, "glyco_bond": "anti", "C5prime_xyz": [ -2.148, 8.262, -1.832 ], "P_xyz": [ -2.622, 7.829, -4.375 ], "form": ".", "ssZp": 1.996, "Dp": 2.010, "splay_angle": 60.974, "splay_distance": 9.228, "splay_ratio": 0.509, "d22": null, "d64": null, "eta": -40.774, "theta": 16.473, "eta_prime": -89.050, "theta_prime": 62.400, "eta_base": -90.860, "theta_base": 97.937, "v0": -22.645, "v1": 37.466, "v2": -37.099, "v3": 25.002, "v4": -1.698, "amplitude": 38.654, "phase_angle": 163.690, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "4s", "suiteness": 0.702, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 157.434, 163.096, 212.836 ], "x_axis": [ -0.956, -0.097, 0.277 ], "y_axis": [ 0.127, -0.987, 0.095 ], "z_axis": [ 0.265, 0.126, 0.956 ], "quaternion": [ -0.057, 0.137, 0.056, 0.987 ] } }, { "index": 1229, "index_chain": 1229, "chain_name": "A", "nt_resnum": 1307, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1307", "linked_nts": [ "///A/1306", "///A/1308" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate", "alpha": -67.529, "beta": 147.922, "gamma": 45.112, "delta": 83.984, "epsilon": -149.126, "zeta": -65.409, "epsilon_zeta": -83.717, "bb_type": "BI", "chi": 170.621, "glyco_bond": "anti", "C5prime_xyz": [ -1.790, 8.247, 2.104 ], "P_xyz": [ 0.597, 8.058, 3.154 ], "form": "A", "ssZp": 4.203, "Dp": 4.453, "splay_angle": 25.969, "splay_distance": 4.037, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 170.707, "theta": -131.053, "eta_prime": 162.136, "theta_prime": -133.242, "eta_base": 167.946, "theta_base": -108.098, "v0": -0.912, "v1": -20.311, "v2": 32.474, "v3": -33.947, "v4": 21.998, "amplitude": 34.577, "phase_angle": 20.086, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "#a", "suiteness": 0.970, "filter_rmsd": 0.108, "frame": { "rmsd": 0.012, "origin": [ 166.067, 163.672, 209.627 ], "x_axis": [ -0.900, 0.334, 0.279 ], "y_axis": [ -0.304, -0.941, 0.147 ], "z_axis": [ 0.312, 0.047, 0.949 ], "quaternion": [ 0.164, 0.152, 0.050, 0.973 ] } }, { "index": 1230, "index_chain": 1230, "chain_name": "A", "nt_resnum": 1308, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1308", "linked_nts": [ "///A/1307", "///A/1309" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -83.656, "beta": -175.196, "gamma": 59.897, "delta": 80.012, "epsilon": -142.881, "zeta": -52.617, "epsilon_zeta": -90.264, "bb_type": "BI", "chi": -169.923, "glyco_bond": "anti", "C5prime_xyz": [ -1.311, 8.580, 1.074 ], "P_xyz": [ 1.229, 8.979, 1.534 ], "form": ".", "ssZp": 4.634, "Dp": 4.698, "splay_angle": 34.232, "splay_distance": 5.296, "splay_ratio": 0.296, "d22": null, "d64": null, "eta": 163.693, "theta": -123.779, "eta_prime": 178.413, "theta_prime": -119.048, "eta_base": -136.168, "theta_base": -75.016, "v0": 2.925, "v1": -25.724, "v2": 37.487, "v3": -36.779, "v4": 21.358, "amplitude": 38.692, "phase_angle": 14.337, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.657, "filter_rmsd": 0.042, "frame": { "rmsd": 0.015, "origin": [ 167.657, 165.755, 212.698 ], "x_axis": [ -0.812, -0.320, 0.488 ], "y_axis": [ 0.275, -0.947, -0.165 ], "z_axis": [ 0.516, 0.000, 0.857 ], "quaternion": [ -0.156, 0.264, -0.043, 0.951 ] } }, { "index": 1231, "index_chain": 1231, "chain_name": "A", "nt_resnum": 1309, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1309", "linked_nts": [ "///A/1308", "///A/1310" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop", "alpha": -76.504, "beta": 172.401, "gamma": 67.081, "delta": 80.531, "epsilon": -145.356, "zeta": -68.186, "epsilon_zeta": -77.169, "bb_type": "BI", "chi": -173.915, "glyco_bond": "anti", "C5prime_xyz": [ -1.553, 8.595, 1.312 ], "P_xyz": [ 1.009, 9.089, 1.504 ], "form": "A", "ssZp": 4.646, "Dp": 4.653, "splay_angle": 25.837, "splay_distance": 4.087, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 164.966, "theta": -138.070, "eta_prime": -167.322, "theta_prime": -137.047, "eta_base": -98.087, "theta_base": -102.773, "v0": 1.353, "v1": -24.150, "v2": 36.479, "v3": -36.655, "v4": 22.261, "amplitude": 38.061, "phase_angle": 16.574, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.535, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 166.389, 164.065, 217.554 ], "x_axis": [ -0.288, -0.954, 0.082 ], "y_axis": [ 0.804, -0.287, -0.521 ], "z_axis": [ 0.521, -0.084, 0.850 ], "quaternion": [ 0.564, -0.193, 0.194, -0.779 ] } }, { "index": 1232, "index_chain": 1232, "chain_name": "A", "nt_resnum": 1310, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1310", "linked_nts": [ "///A/1309", "///A/1311" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -64.077, "beta": 177.722, "gamma": 53.973, "delta": 81.558, "epsilon": -115.099, "zeta": 127.168, "epsilon_zeta": 117.733, "bb_type": "--", "chi": -162.833, "glyco_bond": "anti", "C5prime_xyz": [ -1.378, 8.779, 0.684 ], "P_xyz": [ 1.158, 9.232, 1.118 ], "form": ".", "ssZp": 4.283, "Dp": 4.677, "splay_angle": 110.553, "splay_distance": 16.012, "splay_ratio": 0.822, "d22": null, "d64": null, "eta": 178.694, "theta": 75.151, "eta_prime": -168.565, "theta_prime": 77.340, "eta_base": -122.059, "theta_base": 85.671, "v0": 0.055, "v1": -22.398, "v2": 34.930, "v3": -35.853, "v4": 22.611, "amplitude": 36.838, "phase_angle": 18.520, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.986, "filter_rmsd": 0.061, "frame": { "rmsd": 0.008, "origin": [ 166.597, 162.275, 221.223 ], "x_axis": [ 0.295, -0.893, -0.340 ], "y_axis": [ 0.802, 0.425, -0.421 ], "z_axis": [ 0.520, -0.148, 0.841 ], "quaternion": [ 0.800, -0.085, 0.269, -0.530 ] } }, { "index": 1233, "index_chain": 1233, "chain_name": "A", "nt_resnum": 1311, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1311", "linked_nts": [ "///A/1310", "///A/1312" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,junction-loop,splayed-apart", "alpha": -71.636, "beta": 169.303, "gamma": 0.073, "delta": 78.733, "epsilon": -151.243, "zeta": -130.260, "epsilon_zeta": -20.983, "bb_type": "--", "chi": -120.983, "glyco_bond": "anti", "C5prime_xyz": [ -1.754, 8.501, -1.718 ], "P_xyz": [ 0.449, 9.851, -2.067 ], "form": ".", "ssZp": 2.592, "Dp": 4.615, "splay_angle": 99.892, "splay_distance": 15.089, "splay_ratio": 0.765, "d22": null, "d64": null, "eta": 155.665, "theta": 110.713, "eta_prime": 160.390, "theta_prime": 124.492, "eta_base": 163.791, "theta_base": 127.848, "v0": -0.452, "v1": -23.130, "v2": 36.555, "v3": -37.830, "v4": 24.108, "amplitude": 38.717, "phase_angle": 19.237, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 173.440, 176.356, 217.865 ], "x_axis": [ -0.843, 0.127, 0.523 ], "y_axis": [ 0.235, -0.787, 0.570 ], "z_axis": [ 0.484, 0.604, 0.633 ], "quaternion": [ -0.030, 0.279, 0.325, 0.903 ] } }, { "index": 1234, "index_chain": 1234, "chain_name": "A", "nt_resnum": 1312, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1312", "linked_nts": [ "///A/1311", "///A/1313" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": -124.251, "beta": 94.745, "gamma": 176.273, "delta": 146.263, "epsilon": -117.349, "zeta": -53.114, "epsilon_zeta": -64.235, "bb_type": "--", "chi": -104.637, "glyco_bond": "anti", "C5prime_xyz": [ -2.385, 8.176, -1.928 ], "P_xyz": [ -3.134, 8.400, -4.429 ], "form": ".", "ssZp": 1.268, "Dp": 1.332, "splay_angle": 67.774, "splay_distance": 10.868, "splay_ratio": 0.558, "d22": null, "d64": null, "eta": -95.885, "theta": -131.045, "eta_prime": -138.852, "theta_prime": -106.317, "eta_base": -170.099, "theta_base": -76.640, "v0": -23.413, "v1": 37.141, "v2": -35.919, "v3": 23.319, "v4": -0.154, "amplitude": 37.886, "phase_angle": 161.457, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 187.356, 171.529, 221.141 ], "x_axis": [ 0.277, 0.946, 0.165 ], "y_axis": [ -0.651, 0.059, 0.757 ], "z_axis": [ 0.706, -0.317, 0.633 ], "quaternion": [ 0.702, 0.383, 0.193, 0.569 ] } }, { "index": 1235, "index_chain": 1235, "chain_name": "A", "nt_resnum": 1313, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1313", "linked_nts": [ "///A/1312", "///A/1314" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-pair-contact,junction-loop,splayed-apart", "alpha": -84.827, "beta": 179.662, "gamma": 50.982, "delta": 145.592, "epsilon": -130.789, "zeta": -83.940, "epsilon_zeta": -46.849, "bb_type": "BI", "chi": -98.470, "glyco_bond": "anti", "C5prime_xyz": [ -2.434, 7.983, -2.192 ], "P_xyz": [ -0.061, 9.077, -2.406 ], "form": ".", "ssZp": 1.490, "Dp": 1.640, "splay_angle": 122.492, "splay_distance": 16.927, "splay_ratio": 0.877, "d22": null, "d64": null, "eta": 141.277, "theta": -53.400, "eta_prime": -157.257, "theta_prime": -128.203, "eta_base": -135.387, "theta_base": -168.887, "v0": -22.516, "v1": 35.988, "v2": -34.957, "v3": 22.840, "v4": -0.399, "amplitude": 36.787, "phase_angle": 161.852, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.423, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 183.291, 174.584, 230.746 ], "x_axis": [ -0.667, 0.422, -0.613 ], "y_axis": [ -0.388, -0.900, -0.197 ], "z_axis": [ -0.636, 0.106, 0.765 ], "quaternion": [ 0.222, -0.342, -0.025, 0.913 ] } }, { "index": 1236, "index_chain": 1236, "chain_name": "A", "nt_resnum": 1314, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1314", "linked_nts": [ "///A/1313", "///A/1315" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-stack,non-pair-contact,junction-loop,A-minor,splayed-apart", "alpha": 123.888, "beta": 150.294, "gamma": 42.745, "delta": 149.333, "epsilon": -75.311, "zeta": 140.644, "epsilon_zeta": 144.045, "bb_type": "BII", "chi": -120.846, "glyco_bond": "anti", "C5prime_xyz": [ -2.065, 8.549, -1.132 ], "P_xyz": [ 0.392, 9.187, -0.452 ], "form": ".", "ssZp": 0.221, "Dp": 0.285, "splay_angle": 52.382, "splay_distance": 8.490, "splay_ratio": 0.442, "d22": null, "d64": null, "eta": -27.103, "theta": 176.438, "eta_prime": 47.753, "theta_prime": 161.233, "eta_base": 73.221, "theta_base": -162.395, "v0": -22.940, "v1": 37.877, "v2": -37.402, "v3": 25.154, "v4": -1.596, "amplitude": 39.005, "phase_angle": 163.514, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 183.020, 162.334, 242.424 ], "x_axis": [ 0.958, -0.247, -0.146 ], "y_axis": [ -0.056, 0.336, -0.940 ], "z_axis": [ 0.282, 0.909, 0.308 ], "quaternion": [ 0.807, -0.573, 0.132, -0.059 ] } }, { "index": 1237, "index_chain": 1237, "chain_name": "A", "nt_resnum": 1315, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1315", "linked_nts": [ "///A/1314", "///A/1316" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -79.514, "beta": 110.475, "gamma": 94.674, "delta": 78.515, "epsilon": -148.877, "zeta": -76.190, "epsilon_zeta": -72.687, "bb_type": "BI", "chi": -172.925, "glyco_bond": "anti", "C5prime_xyz": [ -1.673, 8.729, 1.226 ], "P_xyz": [ 0.271, 9.307, -0.416 ], "form": "A", "ssZp": 4.545, "Dp": 4.568, "splay_angle": 24.021, "splay_distance": 3.845, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": -153.235, "theta": -150.172, "eta_prime": -138.109, "theta_prime": -161.618, "eta_base": -94.597, "theta_base": -143.428, "v0": -2.431, "v1": -20.938, "v2": 35.021, "v3": -37.429, "v4": 25.125, "amplitude": 37.832, "phase_angle": 22.228, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 176.383, 166.701, 245.417 ], "x_axis": [ -0.239, 0.970, -0.044 ], "y_axis": [ 0.005, -0.044, -0.999 ], "z_axis": [ -0.971, -0.239, 0.005 ], "quaternion": [ 0.425, -0.447, -0.545, 0.568 ] } }, { "index": 1238, "index_chain": 1238, "chain_name": "A", "nt_resnum": 1316, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1316", "linked_nts": [ "///A/1315", "///A/1317" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -58.967, "beta": 173.191, "gamma": 48.582, "delta": 78.894, "epsilon": -145.299, "zeta": -78.209, "epsilon_zeta": -67.091, "bb_type": "BI", "chi": -167.574, "glyco_bond": "anti", "C5prime_xyz": [ -1.605, 8.689, 0.943 ], "P_xyz": [ 0.876, 9.279, 1.506 ], "form": "A", "ssZp": 4.549, "Dp": 4.637, "splay_angle": 22.843, "splay_distance": 3.660, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 169.124, "theta": -150.830, "eta_prime": 179.940, "theta_prime": -149.050, "eta_base": -144.216, "theta_base": -124.172, "v0": -0.045, "v1": -23.303, "v2": 36.532, "v3": -37.556, "v4": 23.705, "amplitude": 38.563, "phase_angle": 18.675, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.912, "filter_rmsd": 0.043, "frame": { "rmsd": 0.008, "origin": [ 173.080, 166.334, 247.351 ], "x_axis": [ -0.144, 0.827, -0.544 ], "y_axis": [ 0.148, -0.525, -0.838 ], "z_axis": [ -0.978, -0.201, -0.047 ], "quaternion": [ 0.266, -0.598, -0.408, 0.637 ] } }, { "index": 1239, "index_chain": 1239, "chain_name": "A", "nt_resnum": 1317, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1317", "linked_nts": [ "///A/1316", "///A/1318" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -64.625, "beta": 160.843, "gamma": 64.513, "delta": 79.129, "epsilon": -153.187, "zeta": -74.526, "epsilon_zeta": -78.661, "bb_type": "BI", "chi": -172.569, "glyco_bond": "anti", "C5prime_xyz": [ -1.635, 8.696, 1.210 ], "P_xyz": [ 0.897, 9.299, 1.255 ], "form": "A", "ssZp": 4.559, "Dp": 4.569, "splay_angle": 22.566, "splay_distance": 3.553, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 168.219, "theta": -151.070, "eta_prime": -177.669, "theta_prime": -152.576, "eta_base": -138.444, "theta_base": -128.226, "v0": -1.306, "v1": -22.051, "v2": 35.697, "v3": -37.482, "v4": 24.484, "amplitude": 38.127, "phase_angle": 20.566, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.736, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 169.643, 167.150, 248.305 ], "x_axis": [ 0.029, 0.470, -0.882 ], "y_axis": [ 0.177, -0.871, -0.458 ], "z_axis": [ -0.984, -0.143, -0.108 ], "quaternion": [ -0.111, 0.709, 0.228, -0.658 ] } }, { "index": 1240, "index_chain": 1240, "chain_name": "A", "nt_resnum": 1318, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1318", "linked_nts": [ "///A/1317", "///A/1319" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.547, "beta": 173.685, "gamma": 51.634, "delta": 81.701, "epsilon": -167.868, "zeta": -75.234, "epsilon_zeta": -92.634, "bb_type": "BI", "chi": -168.983, "glyco_bond": "anti", "C5prime_xyz": [ -1.389, 8.661, 1.050 ], "P_xyz": [ 1.127, 9.039, 1.620 ], "form": "A", "ssZp": 4.440, "Dp": 4.455, "splay_angle": 21.932, "splay_distance": 3.623, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 168.024, "theta": -133.057, "eta_prime": -178.482, "theta_prime": -140.911, "eta_base": -137.575, "theta_base": -117.147, "v0": 0.932, "v1": -22.736, "v2": 34.688, "v3": -35.166, "v4": 21.626, "amplitude": 36.320, "phase_angle": 17.238, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.963, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 166.332, 168.432, 248.453 ], "x_axis": [ 0.175, -0.071, -0.982 ], "y_axis": [ 0.139, -0.986, 0.096 ], "z_axis": [ -0.975, -0.153, -0.163 ], "quaternion": [ 0.081, 0.762, 0.022, -0.642 ] } }, { "index": 1241, "index_chain": 1241, "chain_name": "A", "nt_resnum": 1319, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1319", "linked_nts": [ "///A/1318", "///A/1320" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 170.989, "beta": -160.013, "gamma": 155.901, "delta": 82.134, "epsilon": -130.809, "zeta": -73.130, "epsilon_zeta": -57.679, "bb_type": "BI", "chi": 177.572, "glyco_bond": "anti", "C5prime_xyz": [ -1.310, 8.293, 1.836 ], "P_xyz": [ 0.838, 9.566, 1.084 ], "form": "A", "ssZp": 4.695, "Dp": 4.719, "splay_angle": 21.878, "splay_distance": 3.626, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 159.927, "theta": -145.283, "eta_prime": 176.032, "theta_prime": -144.335, "eta_base": -139.210, "theta_base": -115.035, "v0": 4.690, "v1": -25.904, "v2": 36.151, "v3": -34.488, "v4": 18.784, "amplitude": 36.895, "phase_angle": 11.520, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.210, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 163.352, 169.844, 246.952 ], "x_axis": [ 0.241, -0.593, -0.769 ], "y_axis": [ -0.024, -0.795, 0.606 ], "z_axis": [ -0.970, -0.128, -0.206 ], "quaternion": [ 0.245, 0.749, -0.206, -0.581 ] } }, { "index": 1242, "index_chain": 1242, "chain_name": "A", "nt_resnum": 1320, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1320", "linked_nts": [ "///A/1319", "///A/1321" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -52.330, "beta": 175.831, "gamma": 43.019, "delta": 81.788, "epsilon": -146.158, "zeta": -89.778, "epsilon_zeta": -56.380, "bb_type": "BI", "chi": -155.280, "glyco_bond": "anti", "C5prime_xyz": [ -1.561, 8.856, 0.239 ], "P_xyz": [ 0.882, 9.584, 0.803 ], "form": ".", "ssZp": 4.173, "Dp": 4.515, "splay_angle": 25.767, "splay_distance": 4.115, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 168.662, "theta": -155.582, "eta_prime": -174.712, "theta_prime": -151.074, "eta_base": -131.055, "theta_base": -120.856, "v0": -2.230, "v1": -19.878, "v2": 33.092, "v3": -35.351, "v4": 23.723, "amplitude": 35.725, "phase_angle": 22.135, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.648, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 161.119, 169.999, 244.100 ], "x_axis": [ 0.238, -0.947, -0.216 ], "y_axis": [ -0.289, -0.281, 0.915 ], "z_axis": [ -0.927, -0.155, -0.340 ], "quaternion": [ 0.393, 0.682, -0.453, -0.419 ] } }, { "index": 1243, "index_chain": 1243, "chain_name": "A", "nt_resnum": 1321, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1321", "linked_nts": [ "///A/1320", "///A/1322" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": -43.365, "beta": 153.973, "gamma": 46.442, "delta": 78.766, "epsilon": -125.994, "zeta": -83.277, "epsilon_zeta": -42.717, "bb_type": "--", "chi": -157.398, "glyco_bond": "anti", "C5prime_xyz": [ -1.458, 8.740, 0.368 ], "P_xyz": [ 1.132, 9.029, 0.196 ], "form": ".", "ssZp": 4.220, "Dp": 4.746, "splay_angle": 31.545, "splay_distance": 4.857, "splay_ratio": 0.273, "d22": null, "d64": null, "eta": 174.265, "theta": -133.015, "eta_prime": -174.992, "theta_prime": -127.773, "eta_base": -137.535, "theta_base": -79.414, "v0": 2.565, "v1": -25.722, "v2": 37.952, "v3": -37.467, "v4": 21.977, "amplitude": 39.279, "phase_angle": 14.935, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.446, "filter_rmsd": 0.100, "frame": { "rmsd": 0.008, "origin": [ 157.688, 168.975, 242.073 ], "x_axis": [ 0.057, -0.957, 0.284 ], "y_axis": [ -0.364, 0.245, 0.899 ], "z_axis": [ -0.930, -0.154, -0.335 ], "quaternion": [ -0.492, -0.535, 0.617, 0.302 ] } }, { "index": 1244, "index_chain": 1244, "chain_name": "A", "nt_resnum": 1322, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1322", "linked_nts": [ "///A/1321", "///A/1323" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor,splayed-apart", "alpha": -48.785, "beta": 147.353, "gamma": 56.850, "delta": 83.202, "epsilon": -125.711, "zeta": -52.101, "epsilon_zeta": -73.610, "bb_type": "--", "chi": -164.925, "glyco_bond": "anti", "C5prime_xyz": [ -1.221, 8.596, 0.801 ], "P_xyz": [ 1.343, 8.573, 0.307 ], "form": ".", "ssZp": 4.499, "Dp": 4.779, "splay_angle": 87.935, "splay_distance": 12.255, "splay_ratio": 0.694, "d22": null, "d64": null, "eta": 169.130, "theta": -100.460, "eta_prime": -169.109, "theta_prime": -152.738, "eta_base": -103.314, "theta_base": 147.141, "v0": 4.743, "v1": -26.012, "v2": 36.284, "v3": -34.527, "v4": 18.847, "amplitude": 37.021, "phase_angle": 11.450, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.451, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 154.576, 165.462, 243.322 ], "x_axis": [ -0.086, -0.351, 0.933 ], "y_axis": [ -0.393, 0.872, 0.292 ], "z_axis": [ -0.915, -0.342, -0.213 ], "quaternion": [ 0.627, 0.252, -0.737, 0.017 ] } }, { "index": 1245, "index_chain": 1245, "chain_name": "A", "nt_resnum": 1323, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1323", "linked_nts": [ "///A/1322", "///A/1324" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -169.709, "beta": 124.466, "gamma": 38.254, "delta": 83.717, "epsilon": -145.635, "zeta": -64.739, "epsilon_zeta": -80.896, "bb_type": "BI", "chi": -159.179, "glyco_bond": "anti", "C5prime_xyz": [ -1.649, 8.774, 0.472 ], "P_xyz": [ 0.963, 8.602, 0.652 ], "form": ".", "ssZp": 4.231, "Dp": 4.462, "splay_angle": 29.281, "splay_distance": 4.605, "splay_ratio": 0.253, "d22": null, "d64": null, "eta": 9.325, "theta": -121.087, "eta_prime": 42.844, "theta_prime": -123.345, "eta_base": 23.215, "theta_base": -74.650, "v0": -2.682, "v1": -18.478, "v2": 31.253, "v3": -33.708, "v4": 22.951, "amplitude": 33.957, "phase_angle": 23.016, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.225, "filter_rmsd": 0.038, "frame": { "rmsd": 0.010, "origin": [ 148.888, 170.423, 233.668 ], "x_axis": [ 0.226, 0.973, 0.053 ], "y_axis": [ -0.227, -0.001, 0.974 ], "z_axis": [ 0.947, -0.232, 0.221 ], "quaternion": [ 0.601, 0.502, 0.372, 0.499 ] } }, { "index": 1246, "index_chain": 1246, "chain_name": "A", "nt_resnum": 1324, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1324", "linked_nts": [ "///A/1323", "///A/1325" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate", "alpha": -70.573, "beta": 165.564, "gamma": 62.559, "delta": 83.767, "epsilon": -111.559, "zeta": -85.446, "epsilon_zeta": -26.113, "bb_type": "--", "chi": -147.447, "glyco_bond": "anti", "C5prime_xyz": [ -1.231, 8.707, -0.241 ], "P_xyz": [ 1.296, 8.800, -0.917 ], "form": ".", "ssZp": 3.617, "Dp": 4.760, "splay_angle": 47.944, "splay_distance": 7.765, "splay_ratio": 0.406, "d22": null, "d64": null, "eta": 173.308, "theta": -126.839, "eta_prime": -165.963, "theta_prime": -116.070, "eta_base": -98.638, "theta_base": -108.807, "v0": 3.734, "v1": -25.002, "v2": 35.537, "v3": -34.347, "v4": 19.346, "amplitude": 36.451, "phase_angle": 12.854, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.812, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 152.381, 172.531, 235.801 ], "x_axis": [ 0.068, 0.542, 0.838 ], "y_axis": [ -0.129, -0.828, 0.546 ], "z_axis": [ 0.989, -0.145, 0.014 ], "quaternion": [ 0.252, 0.686, 0.150, 0.666 ] } }, { "index": 1247, "index_chain": 1247, "chain_name": "A", "nt_resnum": 1325, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1325", "linked_nts": [ "///A/1324", "///A/1326" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart", "alpha": -51.943, "beta": -158.500, "gamma": 60.069, "delta": 143.315, "epsilon": -83.330, "zeta": -156.067, "epsilon_zeta": 72.737, "bb_type": "BII", "chi": -83.621, "glyco_bond": "anti", "C5prime_xyz": [ -3.031, 7.454, -2.667 ], "P_xyz": [ -0.903, 8.818, -3.355 ], "form": ".", "ssZp": 0.414, "Dp": 0.578, "splay_angle": 101.005, "splay_distance": 15.082, "splay_ratio": 0.772, "d22": null, "d64": null, "eta": -136.109, "theta": -118.581, "eta_prime": -120.239, "theta_prime": -171.379, "eta_base": -123.603, "theta_base": 161.952, "v0": -24.685, "v1": 37.000, "v2": -34.526, "v3": 21.194, "v4": 1.975, "amplitude": 37.181, "phase_angle": 158.216, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.321, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 159.020, 172.185, 239.813 ], "x_axis": [ -0.473, 0.277, 0.836 ], "y_axis": [ -0.212, -0.957, 0.197 ], "z_axis": [ 0.855, -0.085, 0.512 ], "quaternion": [ 0.143, 0.493, 0.033, 0.858 ] } }, { "index": 1248, "index_chain": 1248, "chain_name": "A", "nt_resnum": 1326, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1326", "linked_nts": [ "///A/1325", "///A/1327" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BI,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 60.929, "beta": -137.940, "gamma": 56.546, "delta": 148.560, "epsilon": -162.223, "zeta": -84.090, "epsilon_zeta": -78.133, "bb_type": "BI", "chi": -138.572, "glyco_bond": "anti", "C5prime_xyz": [ -1.680, 8.657, -0.154 ], "P_xyz": [ -0.226, 9.236, 1.947 ], "form": ".", "ssZp": 1.516, "Dp": 1.889, "splay_angle": 45.479, "splay_distance": 6.665, "splay_ratio": 0.403, "d22": null, "d64": null, "eta": -20.221, "theta": -79.808, "eta_prime": 19.931, "theta_prime": -108.477, "eta_base": 44.463, "theta_base": -28.959, "v0": -19.417, "v1": 34.456, "v2": -35.561, "v3": 25.290, "v4": -3.931, "amplitude": 36.452, "phase_angle": 167.306, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4p", "suiteness": 0.668, "filter_rmsd": 0.041, "frame": { "rmsd": 0.012, "origin": [ 167.957, 163.797, 231.023 ], "x_axis": [ -0.418, -0.570, -0.707 ], "y_axis": [ -0.700, -0.294, 0.651 ], "z_axis": [ -0.579, 0.767, -0.276 ], "quaternion": [ 0.054, -0.537, 0.592, 0.599 ] } }, { "index": 1249, "index_chain": 1249, "chain_name": "A", "nt_resnum": 1327, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1327", "linked_nts": [ "///A/1326", "///A/1328" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-pair-contact,hairpin-loop,phosphate", "alpha": 149.026, "beta": 172.694, "gamma": 163.953, "delta": 141.473, "epsilon": -81.930, "zeta": -44.052, "epsilon_zeta": -37.878, "bb_type": "--", "chi": 68.851, "glyco_bond": "syn", "C5prime_xyz": [ -5.245, 4.340, 1.709 ], "P_xyz": [ -5.373, 2.908, 3.899 ], "form": ".", "ssZp": -0.407, "Dp": 0.605, "splay_angle": 74.772, "splay_distance": 11.967, "splay_ratio": 0.607, "d22": 9.226, "d64": 10.971, "eta": -178.094, "theta": -65.763, "eta_prime": -162.340, "theta_prime": -62.689, "eta_base": -74.859, "theta_base": -44.269, "v0": -22.647, "v1": 34.424, "v2": -32.427, "v3": 20.268, "v4": 1.258, "amplitude": 34.705, "phase_angle": 159.124, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.109, "frame": { "rmsd": 0.010, "origin": [ 161.670, 164.624, 233.077 ], "x_axis": [ 0.227, -0.527, -0.819 ], "y_axis": [ 0.842, 0.528, -0.106 ], "z_axis": [ 0.488, -0.666, 0.564 ], "quaternion": [ 0.762, 0.184, 0.429, -0.450 ] } }, { "index": 1250, "index_chain": 1250, "chain_name": "A", "nt_resnum": 1328, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1328", "linked_nts": [ "///A/1327", "///A/1329" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -94.317, "beta": -160.296, "gamma": 50.677, "delta": 80.211, "epsilon": -148.415, "zeta": -78.777, "epsilon_zeta": -69.638, "bb_type": "BI", "chi": -165.420, "glyco_bond": "anti", "C5prime_xyz": [ -1.427, 8.790, 0.813 ], "P_xyz": [ 0.868, 9.390, 1.917 ], "form": "A", "ssZp": 4.469, "Dp": 4.574, "splay_angle": 25.717, "splay_distance": 4.000, "splay_ratio": 0.223, "d22": 4.647, "d64": 4.324, "eta": 127.574, "theta": -155.201, "eta_prime": 169.441, "theta_prime": -148.717, "eta_base": -168.811, "theta_base": -118.656, "v0": -0.779, "v1": -21.819, "v2": 34.788, "v3": -36.238, "v4": 23.345, "amplitude": 36.974, "phase_angle": 19.799, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.304, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 160.430, 169.642, 243.870 ], "x_axis": [ 0.341, -0.922, -0.182 ], "y_axis": [ 0.472, 0.336, -0.815 ], "z_axis": [ 0.813, 0.192, 0.550 ], "quaternion": [ 0.746, -0.337, 0.334, -0.467 ] } }, { "index": 1251, "index_chain": 1251, "chain_name": "A", "nt_resnum": 1329, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1329", "linked_nts": [ "///A/1328", "///A/1330" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -72.991, "beta": 179.954, "gamma": 54.103, "delta": 82.501, "epsilon": -148.984, "zeta": -74.262, "epsilon_zeta": -74.722, "bb_type": "BI", "chi": -163.378, "glyco_bond": "anti", "C5prime_xyz": [ -1.093, 8.650, 0.735 ], "P_xyz": [ 1.498, 8.832, 1.089 ], "form": "A", "ssZp": 4.514, "Dp": 4.654, "splay_angle": 29.254, "splay_distance": 4.497, "splay_ratio": 0.253, "d22": 4.253, "d64": 4.369, "eta": 166.204, "theta": -145.445, "eta_prime": 175.439, "theta_prime": -142.840, "eta_base": -147.766, "theta_base": -116.481, "v0": 4.535, "v1": -25.880, "v2": 36.259, "v3": -34.605, "v4": 18.994, "amplitude": 37.034, "phase_angle": 11.737, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.908, "filter_rmsd": 0.064, "frame": { "rmsd": 0.006, "origin": [ 163.128, 169.558, 246.822 ], "x_axis": [ 0.344, -0.597, -0.725 ], "y_axis": [ 0.190, 0.800, -0.569 ], "z_axis": [ 0.919, 0.058, 0.389 ], "quaternion": [ 0.796, -0.197, 0.516, -0.247 ] } }, { "index": 1252, "index_chain": 1252, "chain_name": "A", "nt_resnum": 1330, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1330", "linked_nts": [ "///A/1329", "///A/1331" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.643, "beta": 176.448, "gamma": 53.804, "delta": 83.501, "epsilon": -150.477, "zeta": -67.194, "epsilon_zeta": -83.283, "bb_type": "BI", "chi": -173.834, "glyco_bond": "anti", "C5prime_xyz": [ -1.238, 8.531, 1.363 ], "P_xyz": [ 1.275, 8.648, 2.092 ], "form": "A", "ssZp": 4.569, "Dp": 4.591, "splay_angle": 22.980, "splay_distance": 3.653, "splay_ratio": 0.202, "d22": 4.349, "d64": 4.453, "eta": 172.809, "theta": -139.333, "eta_prime": -174.596, "theta_prime": -138.577, "eta_base": -135.286, "theta_base": -113.056, "v0": 2.997, "v1": -23.971, "v2": 34.629, "v3": -33.838, "v4": 19.478, "amplitude": 35.672, "phase_angle": 13.886, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.974, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 167.154, 168.306, 248.384 ], "x_axis": [ 0.088, -0.070, -0.994 ], "y_axis": [ -0.188, 0.978, -0.086 ], "z_axis": [ 0.978, 0.194, 0.073 ], "quaternion": [ 0.731, -0.096, 0.674, 0.040 ] } }, { "index": 1253, "index_chain": 1253, "chain_name": "A", "nt_resnum": 1331, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1331", "linked_nts": [ "///A/1330", "///A/1332" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -69.064, "beta": 178.070, "gamma": 53.723, "delta": 80.804, "epsilon": -155.268, "zeta": -72.369, "epsilon_zeta": -82.899, "bb_type": "BI", "chi": -167.295, "glyco_bond": "anti", "C5prime_xyz": [ -1.378, 8.726, 0.938 ], "P_xyz": [ 1.136, 9.159, 1.538 ], "form": "A", "ssZp": 4.474, "Dp": 4.546, "splay_angle": 22.274, "splay_distance": 3.543, "splay_ratio": 0.195, "d22": 4.473, "d64": 4.432, "eta": 166.349, "theta": -150.563, "eta_prime": -178.037, "theta_prime": -148.820, "eta_base": -135.188, "theta_base": -129.398, "v0": 0.733, "v1": -23.114, "v2": 35.455, "v3": -35.984, "v4": 22.227, "amplitude": 37.172, "phase_angle": 17.481, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.967, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 170.614, 167.178, 248.056 ], "x_axis": [ -0.092, 0.489, -0.868 ], "y_axis": [ -0.209, 0.842, 0.497 ], "z_axis": [ 0.974, 0.227, 0.025 ], "quaternion": [ 0.666, 0.101, 0.691, 0.262 ] } }, { "index": 1254, "index_chain": 1254, "chain_name": "A", "nt_resnum": 1332, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1332", "linked_nts": [ "///A/1331", "///A/1333" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.983, "beta": -179.217, "gamma": 46.101, "delta": 81.899, "epsilon": -169.604, "zeta": -88.953, "epsilon_zeta": -80.650, "bb_type": "BI", "chi": -158.968, "glyco_bond": "anti", "C5prime_xyz": [ -1.396, 8.720, 0.486 ], "P_xyz": [ 1.097, 9.211, 1.088 ], "form": "A", "ssZp": 4.318, "Dp": 4.431, "splay_angle": 22.048, "splay_distance": 3.603, "splay_ratio": 0.195, "d22": 4.116, "d64": 4.486, "eta": 168.317, "theta": -139.569, "eta_prime": -179.513, "theta_prime": -145.711, "eta_base": -147.629, "theta_base": -121.435, "v0": 1.075, "v1": -22.961, "v2": 34.924, "v3": -35.290, "v4": 21.580, "amplitude": 36.517, "phase_angle": 16.986, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.871, "filter_rmsd": 0.099, "frame": { "rmsd": 0.008, "origin": [ 173.960, 166.391, 247.198 ], "x_axis": [ -0.281, 0.810, -0.515 ], "y_axis": [ -0.091, 0.511, 0.855 ], "z_axis": [ 0.955, 0.287, -0.070 ], "quaternion": [ 0.539, 0.264, 0.682, 0.418 ] } }, { "index": 1255, "index_chain": 1255, "chain_name": "A", "nt_resnum": 1333, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1333", "linked_nts": [ "///A/1332", "///A/1334" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 153.704, "beta": -141.625, "gamma": 170.011, "delta": 82.624, "epsilon": -128.413, "zeta": -71.178, "epsilon_zeta": -57.236, "bb_type": "BI", "chi": 174.545, "glyco_bond": "anti", "C5prime_xyz": [ -1.329, 8.270, 1.989 ], "P_xyz": [ 0.785, 9.504, 1.080 ], "form": "A", "ssZp": 4.649, "Dp": 4.683, "splay_angle": 26.167, "splay_distance": 4.036, "splay_ratio": 0.228, "d22": 3.869, "d64": 3.797, "eta": 166.674, "theta": -142.408, "eta_prime": -179.092, "theta_prime": -141.677, "eta_base": -136.127, "theta_base": -96.139, "v0": 3.282, "v1": -24.518, "v2": 35.312, "v3": -34.379, "v4": 19.632, "amplitude": 36.324, "phase_angle": 13.560, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.535, "filter_rmsd": 0.065, "frame": { "rmsd": 0.008, "origin": [ 176.894, 167.027, 245.206 ], "x_axis": [ -0.329, 0.944, -0.021 ], "y_axis": [ 0.075, 0.048, 0.996 ], "z_axis": [ 0.941, 0.326, -0.086 ], "quaternion": [ 0.398, 0.421, 0.605, 0.546 ] } }, { "index": 1256, "index_chain": 1256, "chain_name": "A", "nt_resnum": 1334, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1334", "linked_nts": [ "///A/1333", "///A/1335" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor", "alpha": -58.437, "beta": 168.443, "gamma": 48.049, "delta": 82.936, "epsilon": -155.396, "zeta": -70.547, "epsilon_zeta": -84.850, "bb_type": "BI", "chi": -170.920, "glyco_bond": "anti", "C5prime_xyz": [ -1.300, 8.624, 1.172 ], "P_xyz": [ 1.220, 8.811, 1.838 ], "form": "A", "ssZp": 4.489, "Dp": 4.529, "splay_angle": 22.025, "splay_distance": 3.515, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 159.511, "theta": -145.977, "eta_prime": -177.047, "theta_prime": -145.541, "eta_base": -109.051, "theta_base": -129.272, "v0": 1.514, "v1": -23.006, "v2": 34.526, "v3": -34.639, "v4": 20.876, "amplitude": 35.965, "phase_angle": 16.261, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.736, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 179.276, 170.181, 244.391 ], "x_axis": [ -0.226, 0.619, 0.752 ], "y_axis": [ 0.254, -0.708, 0.659 ], "z_axis": [ 0.941, 0.340, 0.003 ], "quaternion": [ 0.131, 0.608, 0.359, 0.696 ] } }, { "index": 1257, "index_chain": 1257, "chain_name": "A", "nt_resnum": 1335, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1335", "linked_nts": [ "///A/1334", "///A/1336" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -70.551, "beta": 177.064, "gamma": 58.742, "delta": 84.824, "epsilon": -163.191, "zeta": -69.210, "epsilon_zeta": -93.981, "bb_type": "BI", "chi": -166.961, "glyco_bond": "anti", "C5prime_xyz": [ -1.653, 8.691, 0.909 ], "P_xyz": [ 0.826, 9.205, 1.561 ], "form": "A", "ssZp": 4.228, "Dp": 4.327, "splay_angle": 25.107, "splay_distance": 3.999, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 169.351, "theta": -148.986, "eta_prime": -175.969, "theta_prime": -149.139, "eta_base": -144.677, "theta_base": -128.199, "v0": -2.144, "v1": -19.009, "v2": 31.585, "v3": -33.734, "v4": 22.636, "amplitude": 34.093, "phase_angle": 22.116, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.894, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 181.541, 172.485, 243.004 ], "x_axis": [ -0.174, 0.183, 0.968 ], "y_axis": [ 0.341, -0.911, 0.234 ], "z_axis": [ 0.924, 0.370, 0.096 ], "quaternion": [ -0.053, 0.640, 0.204, 0.738 ] } }, { "index": 1258, "index_chain": 1258, "chain_name": "A", "nt_resnum": 1336, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1336", "linked_nts": [ "///A/1335", "///A/1337" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -79.040, "beta": -170.273, "gamma": 55.482, "delta": 82.324, "epsilon": -158.590, "zeta": -74.403, "epsilon_zeta": -84.187, "bb_type": "BI", "chi": -157.076, "glyco_bond": "anti", "C5prime_xyz": [ -1.382, 8.791, 0.359 ], "P_xyz": [ 1.141, 9.269, 0.871 ], "form": "A", "ssZp": 4.302, "Dp": 4.508, "splay_angle": 27.310, "splay_distance": 4.336, "splay_ratio": 0.237, "d22": 4.621, "d64": 4.760, "eta": 168.747, "theta": -153.876, "eta_prime": 178.779, "theta_prime": -151.885, "eta_base": -148.694, "theta_base": -131.411, "v0": 0.811, "v1": -22.595, "v2": 34.548, "v3": -34.989, "v4": 21.574, "amplitude": 36.189, "phase_angle": 17.320, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.693, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 184.215, 175.443, 242.709 ], "x_axis": [ 0.011, -0.326, 0.945 ], "y_axis": [ 0.366, -0.879, -0.307 ], "z_axis": [ 0.931, 0.349, 0.110 ], "quaternion": [ -0.246, 0.667, 0.015, 0.703 ] } }, { "index": 1259, "index_chain": 1259, "chain_name": "A", "nt_resnum": 1337, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1337", "linked_nts": [ "///A/1336", "///A/1338" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -67.426, "beta": 176.564, "gamma": 59.306, "delta": 83.490, "epsilon": -137.490, "zeta": -58.413, "epsilon_zeta": -79.078, "bb_type": "BI", "chi": -163.872, "glyco_bond": "anti", "C5prime_xyz": [ -1.332, 8.761, 0.747 ], "P_xyz": [ 1.227, 9.149, 1.142 ], "form": ".", "ssZp": 4.376, "Dp": 4.580, "splay_angle": 27.438, "splay_distance": 4.384, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 177.784, "theta": -123.831, "eta_prime": -173.871, "theta_prime": -123.398, "eta_base": -146.208, "theta_base": -73.641, "v0": -0.126, "v1": -21.273, "v2": 33.305, "v3": -34.298, "v4": 21.740, "amplitude": 35.181, "phase_angle": 18.798, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.880, "filter_rmsd": 0.062, "frame": { "rmsd": 0.009, "origin": [ 187.489, 178.138, 243.613 ], "x_axis": [ 0.009, -0.740, 0.673 ], "y_axis": [ 0.247, -0.650, -0.718 ], "z_axis": [ 0.969, 0.173, 0.177 ], "quaternion": [ -0.366, 0.609, -0.202, 0.674 ] } }, { "index": 1260, "index_chain": 1260, "chain_name": "A", "nt_resnum": 1338, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1338", "linked_nts": [ "///A/1337", "///A/1339" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart", "alpha": -87.099, "beta": 157.908, "gamma": 76.442, "delta": 80.607, "epsilon": -92.561, "zeta": 110.890, "epsilon_zeta": 156.550, "bb_type": "--", "chi": -171.649, "glyco_bond": "anti", "C5prime_xyz": [ -1.462, 8.634, 1.149 ], "P_xyz": [ 1.017, 9.211, 0.577 ], "form": ".", "ssZp": 4.399, "Dp": 4.711, "splay_angle": 147.197, "splay_distance": 19.596, "splay_ratio": 0.960, "d22": null, "d64": null, "eta": 167.749, "theta": 95.898, "eta_prime": -170.658, "theta_prime": 93.109, "eta_base": -102.477, "theta_base": 135.648, "v0": 1.308, "v1": -24.301, "v2": 36.724, "v3": -36.948, "v4": 22.524, "amplitude": 38.337, "phase_angle": 16.679, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.164, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 190.619, 175.906, 245.718 ], "x_axis": [ 0.116, -0.985, -0.129 ], "y_axis": [ 0.244, 0.155, -0.957 ], "z_axis": [ 0.963, 0.080, 0.259 ], "quaternion": [ 0.618, -0.419, 0.442, -0.497 ] } }, { "index": 1261, "index_chain": 1261, "chain_name": "A", "nt_resnum": 1339, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1339", "linked_nts": [ "///A/1338", "///A/1340" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,junction-loop,cap-acceptor,phosphate,splayed-apart", "alpha": 63.480, "beta": 178.570, "gamma": -48.450, "delta": 140.360, "epsilon": 17.726, "zeta": -64.242, "epsilon_zeta": -278.031, "bb_type": "--", "chi": -120.194, "glyco_bond": "anti", "C5prime_xyz": [ -1.869, 8.496, -1.197 ], "P_xyz": [ -1.190, 11.008, -0.849 ], "form": ".", "ssZp": -0.223, "Dp": 0.838, "splay_angle": 66.727, "splay_distance": 9.432, "splay_ratio": 0.551, "d22": null, "d64": null, "eta": -63.181, "theta": 71.709, "eta_prime": -64.162, "theta_prime": 56.115, "eta_base": -126.460, "theta_base": 45.335, "v0": -20.161, "v1": 32.529, "v2": -31.862, "v3": 21.026, "v4": -0.746, "amplitude": 33.408, "phase_angle": 162.500, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 200.801, 189.712, 236.247 ], "x_axis": [ 0.368, 0.284, 0.885 ], "y_axis": [ -0.289, -0.870, 0.400 ], "z_axis": [ 0.884, -0.403, -0.238 ], "quaternion": [ 0.255, 0.787, -0.002, 0.562 ] } }, { "index": 1262, "index_chain": 1262, "chain_name": "A", "nt_resnum": 1340, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1340", "linked_nts": [ "///A/1339", "///A/1341" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-canonical,non-pair-contact,junction-loop,splayed-apart", "alpha": 146.514, "beta": 156.202, "gamma": -158.835, "delta": 145.819, "epsilon": -152.758, "zeta": -129.265, "epsilon_zeta": -23.493, "bb_type": "--", "chi": 62.673, "glyco_bond": "syn", "C5prime_xyz": [ -5.345, 4.078, 1.356 ], "P_xyz": [ -6.810, 3.187, 3.324 ], "form": ".", "ssZp": -1.944, "Dp": 1.949, "splay_angle": 99.226, "splay_distance": 14.597, "splay_ratio": 0.762, "d22": null, "d64": null, "eta": 162.704, "theta": -173.733, "eta_prime": 145.182, "theta_prime": 153.986, "eta_base": 133.517, "theta_base": 106.514, "v0": -23.452, "v1": 36.924, "v2": -35.550, "v3": 22.921, "v4": 0.106, "amplitude": 37.587, "phase_angle": 161.053, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.012, "origin": [ 193.404, 185.822, 240.618 ], "x_axis": [ -0.370, -0.146, 0.917 ], "y_axis": [ -0.575, -0.740, -0.350 ], "z_axis": [ 0.730, -0.657, 0.190 ], "quaternion": [ 0.141, 0.543, -0.332, 0.758 ] } }, { "index": 1263, "index_chain": 1263, "chain_name": "A", "nt_resnum": 1341, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1341", "linked_nts": [ "///A/1340", "///A/1342" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": 135.039, "beta": -157.019, "gamma": 61.586, "delta": 148.213, "epsilon": -93.147, "zeta": -91.125, "epsilon_zeta": -2.023, "bb_type": "--", "chi": -143.375, "glyco_bond": "anti", "C5prime_xyz": [ -1.943, 8.700, 0.043 ], "P_xyz": [ -0.099, 9.284, 1.811 ], "form": ".", "ssZp": 0.633, "Dp": 0.695, "splay_angle": 122.040, "splay_distance": 16.581, "splay_ratio": 0.875, "d22": null, "d64": null, "eta": 49.138, "theta": -64.744, "eta_prime": 73.440, "theta_prime": -84.081, "eta_base": 64.849, "theta_base": -56.854, "v0": -22.200, "v1": 36.576, "v2": -36.185, "v3": 24.314, "v4": -1.562, "amplitude": 37.731, "phase_angle": 163.542, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 185.882, 174.180, 236.041 ], "x_axis": [ 0.529, -0.544, -0.651 ], "y_axis": [ 0.242, 0.832, -0.499 ], "z_axis": [ 0.813, 0.107, 0.572 ], "quaternion": [ 0.856, -0.177, 0.428, -0.230 ] } }, { "index": 1264, "index_chain": 1264, "chain_name": "A", "nt_resnum": 1342, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1342", "linked_nts": [ "///A/1341", "///A/1343" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart", "alpha": -66.621, "beta": -163.779, "gamma": 49.765, "delta": 83.421, "epsilon": -152.856, "zeta": -61.559, "epsilon_zeta": -91.297, "bb_type": "BI", "chi": 174.146, "glyco_bond": "anti", "C5prime_xyz": [ -1.492, 8.314, 1.966 ], "P_xyz": [ 0.532, 8.234, 3.616 ], "form": "A", "ssZp": 4.371, "Dp": 4.516, "splay_angle": 23.147, "splay_distance": 3.721, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 170.969, "theta": -139.272, "eta_prime": -154.801, "theta_prime": -127.044, "eta_base": -129.465, "theta_base": -109.346, "v0": 1.008, "v1": -22.225, "v2": 33.764, "v3": -34.150, "v4": 20.912, "amplitude": 35.313, "phase_angle": 17.030, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.696, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 191.877, 189.384, 238.836 ], "x_axis": [ 0.389, -0.234, -0.891 ], "y_axis": [ -0.537, -0.844, -0.012 ], "z_axis": [ -0.749, 0.483, -0.454 ], "quaternion": [ -0.151, 0.820, -0.235, -0.500 ] } }, { "index": 1265, "index_chain": 1265, "chain_name": "A", "nt_resnum": 1343, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1343", "linked_nts": [ "///A/1342", "///A/1344" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -78.676, "beta": -150.028, "gamma": 56.067, "delta": 146.895, "epsilon": -166.052, "zeta": -93.407, "epsilon_zeta": -72.645, "bb_type": "BI", "chi": -130.676, "glyco_bond": "anti", "C5prime_xyz": [ -1.737, 8.645, -0.635 ], "P_xyz": [ 0.355, 9.409, 0.767 ], "form": ".", "ssZp": 2.396, "Dp": 2.257, "splay_angle": 16.041, "splay_distance": 2.866, "splay_ratio": 0.147, "d22": 4.537, "d64": 4.209, "eta": 170.823, "theta": -118.594, "eta_prime": -161.036, "theta_prime": -132.420, "eta_base": -135.855, "theta_base": -126.393, "v0": -20.568, "v1": 34.497, "v2": -34.331, "v3": 23.342, "v4": -1.920, "amplitude": 35.671, "phase_angle": 164.248, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.689, "filter_rmsd": 0.062, "frame": { "rmsd": 0.011, "origin": [ 191.049, 192.657, 237.272 ], "x_axis": [ 0.191, -0.754, -0.629 ], "y_axis": [ -0.723, -0.541, 0.430 ], "z_axis": [ -0.664, 0.372, -0.648 ], "quaternion": [ 0.019, 0.771, -0.478, -0.419 ] } }, { "index": 1266, "index_chain": 1266, "chain_name": "A", "nt_resnum": 1344, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1344", "linked_nts": [ "///A/1343", "///A/1345" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,phosphate", "alpha": -74.415, "beta": -162.030, "gamma": 27.184, "delta": 142.783, "epsilon": -168.940, "zeta": -108.550, "epsilon_zeta": -60.390, "bb_type": "BI", "chi": -96.718, "glyco_bond": "anti", "C5prime_xyz": [ -2.311, 8.019, -2.350 ], "P_xyz": [ -0.484, 9.902, -2.469 ], "form": ".", "ssZp": 2.043, "Dp": 2.146, "splay_angle": 13.248, "splay_distance": 2.240, "splay_ratio": 0.119, "d22": 4.383, "d64": 3.109, "eta": 150.908, "theta": -149.674, "eta_prime": 174.784, "theta_prime": -152.459, "eta_base": -165.515, "theta_base": -111.486, "v0": -24.090, "v1": 36.683, "v2": -34.593, "v3": 21.497, "v4": 1.413, "amplitude": 37.034, "phase_angle": 159.085, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.010, "origin": [ 190.633, 194.631, 235.236 ], "x_axis": [ -0.062, -0.967, -0.249 ], "y_axis": [ -0.871, -0.069, 0.486 ], "z_axis": [ -0.487, 0.247, -0.838 ], "quaternion": [ 0.088, 0.679, -0.676, -0.271 ] } }, { "index": 1267, "index_chain": 1267, "chain_name": "A", "nt_resnum": 1345, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1345", "linked_nts": [ "///A/1344", "///A/1346" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,junction-loop,phosphate", "alpha": -63.018, "beta": 178.567, "gamma": 44.188, "delta": 144.580, "epsilon": -163.056, "zeta": -137.737, "epsilon_zeta": -25.319, "bb_type": "--", "chi": -72.821, "glyco_bond": "anti", "C5prime_xyz": [ -3.246, 7.009, -2.925 ], "P_xyz": [ -1.230, 8.079, -4.204 ], "form": ".", "ssZp": 1.656, "Dp": 2.082, "splay_angle": 53.700, "splay_distance": 9.394, "splay_ratio": 0.454, "d22": null, "d64": null, "eta": 163.731, "theta": -146.000, "eta_prime": -169.819, "theta_prime": -173.060, "eta_base": -127.360, "theta_base": -143.252, "v0": -24.531, "v1": 37.769, "v2": -35.756, "v3": 22.499, "v4": 1.066, "amplitude": 38.142, "phase_angle": 159.627, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.008, "origin": [ 189.004, 194.624, 233.700 ], "x_axis": [ -0.431, -0.901, 0.050 ], "y_axis": [ -0.894, 0.434, 0.109 ], "z_axis": [ -0.120, 0.002, -0.993 ], "quaternion": [ -0.050, -0.531, 0.845, 0.033 ] } }, { "index": 1268, "index_chain": 1268, "chain_name": "A", "nt_resnum": 1346, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1346", "linked_nts": [ "///A/1345", "///A/1347" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate", "alpha": 30.320, "beta": -174.904, "gamma": -61.781, "delta": 85.792, "epsilon": -146.335, "zeta": -68.844, "epsilon_zeta": -77.490, "bb_type": "BI", "chi": -173.052, "glyco_bond": "anti", "C5prime_xyz": [ -1.343, 8.453, 1.310 ], "P_xyz": [ -0.661, 10.441, 2.851 ], "form": "A", "ssZp": 4.590, "Dp": 4.606, "splay_angle": 25.090, "splay_distance": 3.823, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 169.738, "theta": -174.435, "eta_prime": 159.170, "theta_prime": -158.491, "eta_base": -162.219, "theta_base": -101.145, "v0": 3.254, "v1": -23.389, "v2": 33.420, "v3": -32.457, "v4": 18.473, "amplitude": 34.339, "phase_angle": 13.286, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 185.687, 195.450, 224.950 ], "x_axis": [ -0.386, -0.774, 0.502 ], "y_axis": [ -0.006, 0.546, 0.838 ], "z_axis": [ -0.923, 0.320, -0.216 ], "quaternion": [ -0.486, -0.266, 0.733, 0.395 ] } }, { "index": 1269, "index_chain": 1269, "chain_name": "A", "nt_resnum": 1347, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1347", "linked_nts": [ "///A/1346", "///A/1348" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop", "alpha": -68.463, "beta": 166.119, "gamma": 60.297, "delta": 85.992, "epsilon": -149.514, "zeta": -35.070, "epsilon_zeta": -114.444, "bb_type": "BI", "chi": -172.536, "glyco_bond": "anti", "C5prime_xyz": [ -1.445, 8.482, 1.286 ], "P_xyz": [ 1.142, 8.649, 1.640 ], "form": ".", "ssZp": 4.478, "Dp": 4.536, "splay_angle": 37.254, "splay_distance": 5.845, "splay_ratio": 0.321, "d22": null, "d64": null, "eta": 165.989, "theta": -102.609, "eta_prime": -172.173, "theta_prime": -103.340, "eta_base": -110.146, "theta_base": -55.670, "v0": 2.662, "v1": -22.930, "v2": 33.257, "v3": -32.681, "v4": 18.986, "amplitude": 34.319, "phase_angle": 14.292, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.839, "filter_rmsd": 0.040, "frame": { "rmsd": 0.011, "origin": [ 181.918, 194.901, 224.616 ], "x_axis": [ -0.260, -0.180, 0.948 ], "y_axis": [ 0.307, 0.916, 0.258 ], "z_axis": [ -0.915, 0.358, -0.183 ], "quaternion": [ 0.607, -0.041, -0.768, -0.201 ] } }, { "index": 1270, "index_chain": 1270, "chain_name": "A", "nt_resnum": 1348, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1348", "linked_nts": [ "///A/1347", "///A/1349" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate", "alpha": -97.141, "beta": -177.795, "gamma": 68.466, "delta": 81.428, "epsilon": -148.066, "zeta": -68.306, "epsilon_zeta": -79.760, "bb_type": "BI", "chi": -156.257, "glyco_bond": "anti", "C5prime_xyz": [ -1.550, 8.814, 0.293 ], "P_xyz": [ 1.001, 9.376, 0.227 ], "form": "A", "ssZp": 4.273, "Dp": 4.578, "splay_angle": 24.517, "splay_distance": 4.100, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 155.568, "theta": -142.055, "eta_prime": -170.100, "theta_prime": -142.851, "eta_base": -92.307, "theta_base": -122.483, "v0": 0.341, "v1": -23.000, "v2": 35.607, "v3": -36.384, "v4": 22.732, "amplitude": 37.456, "phase_angle": 18.080, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.049, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 178.263, 197.064, 228.631 ], "x_axis": [ 0.170, 0.773, 0.612 ], "y_axis": [ 0.275, 0.559, -0.782 ], "z_axis": [ -0.946, 0.301, -0.118 ], "quaternion": [ 0.635, -0.427, -0.614, 0.196 ] } }, { "index": 1271, "index_chain": 1271, "chain_name": "A", "nt_resnum": 1349, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1349", "linked_nts": [ "///A/1348", "///A/1350" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,bulge,phosphate", "alpha": -80.494, "beta": 161.048, "gamma": 85.388, "delta": 80.095, "epsilon": -118.249, "zeta": -72.244, "epsilon_zeta": -46.005, "bb_type": "--", "chi": -165.038, "glyco_bond": "anti", "C5prime_xyz": [ -1.927, 8.901, 0.715 ], "P_xyz": [ 0.447, 9.862, 0.214 ], "form": ".", "ssZp": 4.173, "Dp": 4.451, "splay_angle": 54.986, "splay_distance": 7.836, "splay_ratio": 0.508, "d22": null, "d64": null, "eta": -179.648, "theta": -121.821, "eta_prime": -166.426, "theta_prime": -112.081, "eta_base": -134.327, "theta_base": -31.608, "v0": -7.077, "v1": -16.345, "v2": 32.101, "v3": -37.069, "v4": 27.836, "amplitude": 36.841, "phase_angle": 29.386, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.014, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 174.616, 198.286, 230.054 ], "x_axis": [ 0.373, 0.908, 0.193 ], "y_axis": [ 0.123, 0.157, -0.980 ], "z_axis": [ -0.920, 0.389, -0.053 ], "quaternion": [ 0.608, -0.563, -0.458, 0.323 ] } }, { "index": 1272, "index_chain": 1272, "chain_name": "A", "nt_resnum": 1350, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1350", "linked_nts": [ "///A/1349", "///A/1351" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,BII,non-pair-contact,bulge", "alpha": -43.863, "beta": 167.483, "gamma": 53.330, "delta": 144.808, "epsilon": -98.584, "zeta": 150.351, "epsilon_zeta": 111.064, "bb_type": "BII", "chi": 49.661, "glyco_bond": "syn", "C5prime_xyz": [ -5.552, 4.042, 0.718 ], "P_xyz": [ -5.668, 1.554, -0.107 ], "form": ".", "ssZp": -0.903, "Dp": 0.913, "splay_angle": 76.364, "splay_distance": 12.039, "splay_ratio": 0.619, "d22": 5.605, "d64": 5.384, "eta": -169.440, "theta": 147.791, "eta_prime": -130.020, "theta_prime": 147.406, "eta_base": -55.532, "theta_base": 158.636, "v0": -24.879, "v1": 37.710, "v2": -35.459, "v3": 22.027, "v4": 1.576, "amplitude": 38.010, "phase_angle": 158.887, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.493, "filter_rmsd": 0.105, "frame": { "rmsd": 0.006, "origin": [ 174.283, 202.018, 223.173 ], "x_axis": [ 0.488, 0.719, 0.495 ], "y_axis": [ -0.666, -0.060, 0.743 ], "z_axis": [ 0.564, -0.692, 0.450 ], "quaternion": [ 0.685, 0.524, 0.025, 0.505 ] } }, { "index": 1273, "index_chain": 1273, "chain_name": "A", "nt_resnum": 1351, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1351", "linked_nts": [ "///A/1350", "///A/1352" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,bulge,cap-donor,phosphate", "alpha": -96.958, "beta": 172.555, "gamma": 49.828, "delta": 147.222, "epsilon": -94.779, "zeta": 97.715, "epsilon_zeta": 167.507, "bb_type": "--", "chi": -123.553, "glyco_bond": "anti", "C5prime_xyz": [ -1.857, 8.539, -1.037 ], "P_xyz": [ 0.517, 9.310, -0.249 ], "form": ".", "ssZp": 0.703, "Dp": 0.815, "splay_angle": 29.597, "splay_distance": 5.000, "splay_ratio": 0.268, "d22": 6.010, "d64": 4.817, "eta": -153.905, "theta": 136.801, "eta_prime": -155.544, "theta_prime": 85.154, "eta_base": -149.891, "theta_base": 76.207, "v0": -20.923, "v1": 35.124, "v2": -35.168, "v3": 24.004, "v4": -2.146, "amplitude": 36.485, "phase_angle": 164.558, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4b", "suiteness": 0.271, "filter_rmsd": 0.100, "frame": { "rmsd": 0.008, "origin": [ 168.697, 201.672, 233.831 ], "x_axis": [ 0.329, 0.759, -0.561 ], "y_axis": [ -0.390, -0.432, -0.813 ], "z_axis": [ -0.860, 0.487, 0.154 ], "quaternion": [ 0.513, -0.634, -0.146, 0.560 ] } }, { "index": 1274, "index_chain": 1274, "chain_name": "A", "nt_resnum": 1352, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1352", "linked_nts": [ "///A/1351", "///A/1353" ], "nt_type": "RNA", "dbn": "(", "summary": "turn,syn,~C3'-endo,non-stack,isolated-canonical,non-pair-contact,helix-end,bulge,junction-loop,cap-acceptor", "alpha": 55.359, "beta": -156.405, "gamma": 173.410, "delta": 83.199, "epsilon": -104.207, "zeta": -39.083, "epsilon_zeta": -65.125, "bb_type": "--", "chi": 85.482, "glyco_bond": "syn", "C5prime_xyz": [ -4.734, 5.227, 2.694 ], "P_xyz": [ -4.044, 5.482, 5.204 ], "form": ".", "ssZp": 0.038, "Dp": 4.304, "splay_angle": 68.229, "splay_distance": 9.269, "splay_ratio": 0.561, "d22": 7.135, "d64": 8.775, "eta": 128.278, "theta": -96.457, "eta_prime": 108.720, "theta_prime": -90.070, "eta_base": 120.652, "theta_base": -60.928, "v0": -5.246, "v1": -16.487, "v2": 30.518, "v3": -34.490, "v4": 25.045, "amplitude": 34.316, "phase_angle": 27.211, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6n", "suiteness": 0.802, "filter_rmsd": 0.111, "frame": { "rmsd": 0.013, "origin": [ 170.665, 197.549, 231.799 ], "x_axis": [ 0.366, 0.583, -0.725 ], "y_axis": [ -0.300, -0.664, -0.685 ], "z_axis": [ -0.881, 0.468, -0.068 ], "quaternion": [ -0.398, 0.724, 0.098, -0.555 ] } }, { "index": 1275, "index_chain": 1275, "chain_name": "A", "nt_resnum": 1353, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1353", "linked_nts": [ "///A/1352", "///A/1354" ], "nt_type": "RNA", "dbn": "(", "summary": "~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,junction-loop,A-minor", "alpha": -85.017, "beta": -138.880, "gamma": 51.204, "delta": 87.077, "epsilon": -134.402, "zeta": -73.436, "epsilon_zeta": -60.967, "bb_type": "BI", "chi": 174.255, "glyco_bond": "--", "C5prime_xyz": [ -1.106, 8.123, 2.046 ], "P_xyz": [ 0.541, 7.306, 3.911 ], "form": "A", "ssZp": 4.558, "Dp": 4.642, "splay_angle": 27.788, "splay_distance": 4.398, "splay_ratio": 0.243, "d22": 4.830, "d64": 5.008, "eta": 166.676, "theta": -128.699, "eta_prime": -161.905, "theta_prime": -122.704, "eta_base": -112.531, "theta_base": -100.230, "v0": 5.847, "v1": -24.839, "v2": 33.350, "v3": -30.908, "v4": 15.857, "amplitude": 33.757, "phase_angle": 8.904, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.130, "filter_rmsd": 0.069, "frame": { "rmsd": 0.010, "origin": [ 162.880, 197.547, 236.828 ], "x_axis": [ -0.392, 0.047, -0.919 ], "y_axis": [ 0.805, -0.467, -0.367 ], "z_axis": [ -0.446, -0.883, 0.146 ], "quaternion": [ -0.268, -0.482, -0.441, 0.708 ] } }, { "index": 1276, "index_chain": 1276, "chain_name": "A", "nt_resnum": 1354, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1354", "linked_nts": [ "///A/1353", "///A/1355" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -56.600, "beta": 179.219, "gamma": 44.420, "delta": 83.187, "epsilon": -155.195, "zeta": -68.945, "epsilon_zeta": -86.250, "bb_type": "BI", "chi": -169.661, "glyco_bond": "anti", "C5prime_xyz": [ -1.284, 8.710, 1.088 ], "P_xyz": [ 1.068, 9.071, 2.191 ], "form": "A", "ssZp": 4.366, "Dp": 4.444, "splay_angle": 22.861, "splay_distance": 3.611, "splay_ratio": 0.199, "d22": 4.571, "d64": 4.340, "eta": 169.379, "theta": -147.356, "eta_prime": -174.338, "theta_prime": -144.823, "eta_base": -138.429, "theta_base": -118.876, "v0": -0.761, "v1": -20.312, "v2": 32.407, "v3": -33.770, "v4": 21.811, "amplitude": 34.456, "phase_angle": 19.862, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.729, "filter_rmsd": 0.063, "frame": { "rmsd": 0.008, "origin": [ 159.396, 195.157, 238.050 ], "x_axis": [ 0.160, -0.114, -0.981 ], "y_axis": [ 0.942, -0.281, 0.186 ], "z_axis": [ -0.296, -0.953, 0.063 ], "quaternion": [ 0.485, 0.587, 0.352, -0.544 ] } }, { "index": 1277, "index_chain": 1277, "chain_name": "A", "nt_resnum": 1355, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1355", "linked_nts": [ "///A/1354", "///A/1356" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -73.504, "beta": -177.661, "gamma": 50.893, "delta": 82.072, "epsilon": -152.497, "zeta": -68.726, "epsilon_zeta": -83.771, "bb_type": "BI", "chi": -162.170, "glyco_bond": "anti", "C5prime_xyz": [ -1.221, 8.662, 0.660 ], "P_xyz": [ 1.317, 9.038, 1.181 ], "form": "A", "ssZp": 4.455, "Dp": 4.601, "splay_angle": 20.008, "splay_distance": 3.251, "splay_ratio": 0.177, "d22": null, "d64": null, "eta": 164.376, "theta": -144.771, "eta_prime": 176.876, "theta_prime": -143.939, "eta_base": -144.991, "theta_base": -121.735, "v0": 2.570, "v1": -24.196, "v2": 35.453, "v3": -34.900, "v4": 20.427, "amplitude": 36.648, "phase_angle": 14.669, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.895, "filter_rmsd": 0.102, "frame": { "rmsd": 0.010, "origin": [ 157.054, 192.411, 237.963 ], "x_axis": [ 0.659, -0.200, -0.725 ], "y_axis": [ 0.706, -0.168, 0.688 ], "z_axis": [ -0.259, -0.965, 0.031 ], "quaternion": [ 0.617, 0.670, 0.189, -0.367 ] } }, { "index": 1278, "index_chain": 1278, "chain_name": "A", "nt_resnum": 1356, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1356", "linked_nts": [ "///A/1355", "///A/1357" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -64.044, "beta": -179.313, "gamma": 42.425, "delta": 80.572, "epsilon": -179.099, "zeta": -84.047, "epsilon_zeta": -95.052, "bb_type": "BI", "chi": -160.762, "glyco_bond": "anti", "C5prime_xyz": [ -1.343, 8.793, 0.579 ], "P_xyz": [ 1.107, 9.339, 1.315 ], "form": "A", "ssZp": 4.287, "Dp": 4.345, "splay_angle": 23.230, "splay_distance": 3.730, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 161.493, "theta": -144.524, "eta_prime": 176.175, "theta_prime": -147.478, "eta_base": -145.645, "theta_base": -123.907, "v0": 0.308, "v1": -22.691, "v2": 35.210, "v3": -36.008, "v4": 22.525, "amplitude": 37.055, "phase_angle": 18.155, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.764, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 155.680, 189.876, 236.462 ], "x_axis": [ 0.972, 0.035, -0.234 ], "y_axis": [ 0.237, -0.118, 0.964 ], "z_axis": [ 0.006, -0.992, -0.123 ], "quaternion": [ 0.658, 0.744, 0.091, -0.077 ] } }, { "index": 1279, "index_chain": 1279, "chain_name": "A", "nt_resnum": 1357, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1357", "linked_nts": [ "///A/1356", "///A/1358" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 165.155, "beta": -139.344, "gamma": 160.817, "delta": 83.060, "epsilon": -137.565, "zeta": -62.601, "epsilon_zeta": -74.964, "bb_type": "BI", "chi": 172.962, "glyco_bond": "anti", "C5prime_xyz": [ -1.652, 8.272, 2.017 ], "P_xyz": [ 0.643, 9.331, 1.360 ], "form": "A", "ssZp": 4.448, "Dp": 4.553, "splay_angle": 19.410, "splay_distance": 3.333, "splay_ratio": 0.181, "d22": null, "d64": null, "eta": 168.896, "theta": -135.301, "eta_prime": -174.567, "theta_prime": -138.223, "eta_base": -133.863, "theta_base": -115.768, "v0": -0.630, "v1": -20.573, "v2": 32.781, "v3": -34.066, "v4": 21.888, "amplitude": 34.807, "phase_angle": 19.643, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.304, "filter_rmsd": 0.044, "frame": { "rmsd": 0.015, "origin": [ 155.668, 186.826, 234.316 ], "x_axis": [ 0.969, -0.010, 0.248 ], "y_axis": [ -0.248, -0.083, 0.965 ], "z_axis": [ 0.011, -0.996, -0.083 ], "quaternion": [ 0.671, 0.731, -0.088, 0.089 ] } }, { "index": 1280, "index_chain": 1280, "chain_name": "A", "nt_resnum": 1358, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1358", "linked_nts": [ "///A/1357", "///A/1359" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor", "alpha": -72.637, "beta": -163.147, "gamma": 41.654, "delta": 88.905, "epsilon": -146.147, "zeta": -102.972, "epsilon_zeta": -43.175, "bb_type": "BI", "chi": -138.167, "glyco_bond": "anti", "C5prime_xyz": [ -1.679, 8.750, -0.706 ], "P_xyz": [ 0.593, 9.813, 0.053 ], "form": ".", "ssZp": 3.359, "Dp": 4.241, "splay_angle": 19.151, "splay_distance": 3.603, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 165.318, "theta": -162.882, "eta_prime": -178.425, "theta_prime": -148.480, "eta_base": -141.828, "theta_base": -87.477, "v0": -4.067, "v1": -14.447, "v2": 26.229, "v3": -29.335, "v4": 21.104, "amplitude": 29.281, "phase_angle": 26.393, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.536, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 157.325, 184.525, 232.565 ], "x_axis": [ 0.577, 0.081, 0.813 ], "y_axis": [ -0.774, -0.264, 0.576 ], "z_axis": [ 0.261, -0.961, -0.089 ], "quaternion": [ 0.553, 0.695, -0.249, 0.386 ] } }, { "index": 1281, "index_chain": 1281, "chain_name": "A", "nt_resnum": 1359, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1359", "linked_nts": [ "///A/1358", "///A/1360" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor", "alpha": -41.526, "beta": 142.696, "gamma": 63.807, "delta": 146.202, "epsilon": -95.411, "zeta": 124.667, "epsilon_zeta": 139.922, "bb_type": "BII", "chi": -105.877, "glyco_bond": "anti", "C5prime_xyz": [ -1.486, 8.100, -1.883 ], "P_xyz": [ 1.046, 7.483, -2.095 ], "form": ".", "ssZp": 0.357, "Dp": 1.327, "splay_angle": 68.093, "splay_distance": 11.736, "splay_ratio": 0.560, "d22": null, "d64": null, "eta": -160.589, "theta": 155.601, "eta_prime": -130.392, "theta_prime": 116.635, "eta_base": -79.437, "theta_base": 131.453, "v0": -13.429, "v1": 28.225, "v2": -31.547, "v3": 24.576, "v4": -7.226, "amplitude": 31.709, "phase_angle": 174.206, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.185, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 156.890, 181.398, 234.302 ], "x_axis": [ -0.069, -0.094, 0.993 ], "y_axis": [ -0.813, -0.572, -0.110 ], "z_axis": [ 0.579, -0.815, -0.037 ], "quaternion": [ 0.284, 0.621, -0.365, 0.633 ] } }, { "index": 1282, "index_chain": 1282, "chain_name": "A", "nt_resnum": 1360, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1360", "linked_nts": [ "///A/1359", "///A/1361" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": 65.656, "beta": 156.599, "gamma": -166.623, "delta": 83.300, "epsilon": -108.288, "zeta": -72.723, "epsilon_zeta": -35.565, "bb_type": "--", "chi": 158.399, "glyco_bond": "anti", "C5prime_xyz": [ -1.391, 7.483, 2.723 ], "P_xyz": [ -0.508, 9.805, 3.532 ], "form": ".", "ssZp": 4.816, "Dp": 4.869, "splay_angle": 32.339, "splay_distance": 4.802, "splay_ratio": 0.284, "d22": null, "d64": null, "eta": 130.767, "theta": -155.669, "eta_prime": 109.416, "theta_prime": -142.307, "eta_base": 130.340, "theta_base": -82.397, "v0": 9.807, "v1": -30.331, "v2": 38.330, "v3": -33.623, "v4": 15.054, "amplitude": 38.430, "phase_angle": 4.140, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6n", "suiteness": 0.055, "filter_rmsd": 0.043, "frame": { "rmsd": 0.010, "origin": [ 154.480, 184.332, 223.197 ], "x_axis": [ 0.416, 0.351, 0.839 ], "y_axis": [ -0.661, -0.516, 0.544 ], "z_axis": [ 0.624, -0.781, 0.018 ], "quaternion": [ 0.479, 0.692, -0.112, 0.529 ] } }, { "index": 1283, "index_chain": 1283, "chain_name": "A", "nt_resnum": 1361, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1361", "linked_nts": [ "///A/1360", "///A/1362" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor", "alpha": -66.670, "beta": 166.092, "gamma": 59.188, "delta": 82.841, "epsilon": -154.726, "zeta": -57.832, "epsilon_zeta": -96.894, "bb_type": "BI", "chi": 175.997, "glyco_bond": "anti", "C5prime_xyz": [ -1.550, 8.305, 1.875 ], "P_xyz": [ 0.977, 8.521, 2.513 ], "form": "A", "ssZp": 4.503, "Dp": 4.553, "splay_angle": 25.732, "splay_distance": 3.922, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 154.731, "theta": -132.267, "eta_prime": -177.150, "theta_prime": -131.313, "eta_base": -102.382, "theta_base": -91.701, "v0": 1.504, "v1": -23.030, "v2": 34.513, "v3": -34.604, "v4": 20.902, "amplitude": 35.950, "phase_angle": 16.255, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.256, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 158.271, 182.851, 225.745 ], "x_axis": [ -0.406, -0.171, 0.898 ], "y_axis": [ -0.774, -0.459, -0.437 ], "z_axis": [ 0.487, -0.872, 0.054 ], "quaternion": [ 0.218, 0.500, -0.473, 0.692 ] } }, { "index": 1284, "index_chain": 1284, "chain_name": "A", "nt_resnum": 1362, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1362", "linked_nts": [ "///A/1361", "///A/1363" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate", "alpha": -82.699, "beta": -161.240, "gamma": 52.465, "delta": 82.819, "epsilon": 139.645, "zeta": 79.958, "epsilon_zeta": 59.687, "bb_type": "--", "chi": -164.575, "glyco_bond": "anti", "C5prime_xyz": [ -1.066, 8.652, 0.936 ], "P_xyz": [ 1.196, 8.648, 2.262 ], "form": ".", "ssZp": 3.462, "Dp": 3.689, "splay_angle": 17.318, "splay_distance": 3.391, "splay_ratio": 0.169, "d22": null, "d64": null, "eta": 170.304, "theta": -86.141, "eta_prime": -166.714, "theta_prime": -108.842, "eta_base": -108.769, "theta_base": -99.689, "v0": 3.782, "v1": -23.066, "v2": 32.492, "v3": -31.266, "v4": 17.460, "amplitude": 33.260, "phase_angle": 12.341, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.545, "filter_rmsd": 0.017, "frame": { "rmsd": 0.017, "origin": [ 160.052, 180.135, 227.944 ], "x_axis": [ -0.936, -0.270, 0.227 ], "y_axis": [ -0.215, -0.073, -0.974 ], "z_axis": [ 0.280, -0.960, 0.010 ], "quaternion": [ -0.019, 0.178, -0.680, 0.711 ] } }, { "index": 1285, "index_chain": 1285, "chain_name": "A", "nt_resnum": 1363, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1363", "linked_nts": [ "///A/1362", "///A/1364" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,phosphate,splayed-apart", "alpha": -67.637, "beta": -75.805, "gamma": -100.289, "delta": 152.653, "epsilon": -111.413, "zeta": -30.301, "epsilon_zeta": -81.112, "bb_type": "--", "chi": -147.466, "glyco_bond": "anti", "C5prime_xyz": [ -1.326, 8.496, 0.481 ], "P_xyz": [ -1.426, 10.658, -1.011 ], "form": ".", "ssZp": 1.222, "Dp": 1.243, "splay_angle": 136.100, "splay_distance": 19.868, "splay_ratio": 0.928, "d22": null, "d64": null, "eta": -163.454, "theta": -64.079, "eta_prime": -151.614, "theta_prime": -59.334, "eta_base": -127.980, "theta_base": -67.034, "v0": -13.544, "v1": 30.898, "v2": -35.471, "v3": 28.597, "v4": -9.659, "amplitude": 35.528, "phase_angle": 176.757, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 160.321, 177.574, 230.150 ], "x_axis": [ -0.971, -0.108, -0.215 ], "y_axis": [ 0.226, -0.105, -0.968 ], "z_axis": [ 0.082, -0.989, 0.127 ], "quaternion": [ -0.113, -0.045, -0.659, 0.742 ] } }, { "index": 1286, "index_chain": 1286, "chain_name": "A", "nt_resnum": 1364, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1364", "linked_nts": [ "///A/1363", "///A/1365" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,phosphate,splayed-apart", "alpha": 147.157, "beta": -127.161, "gamma": -85.617, "delta": 152.099, "epsilon": -106.938, "zeta": -86.803, "epsilon_zeta": -20.136, "bb_type": "--", "chi": -140.838, "glyco_bond": "anti", "C5prime_xyz": [ -1.679, 8.703, -0.027 ], "P_xyz": [ -1.504, 11.159, -0.930 ], "form": ".", "ssZp": 0.890, "Dp": 0.948, "splay_angle": 115.727, "splay_distance": 16.332, "splay_ratio": 0.847, "d22": 9.342, "d64": 11.584, "eta": -51.467, "theta": -131.505, "eta_prime": -24.517, "theta_prime": -122.054, "eta_base": -6.158, "theta_base": -91.992, "v0": -20.125, "v1": 36.430, "v2": -37.816, "v3": 27.191, "v4": -4.655, "amplitude": 38.659, "phase_angle": 168.014, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.060, "frame": { "rmsd": 0.009, "origin": [ 170.386, 168.811, 215.431 ], "x_axis": [ 0.956, 0.260, -0.133 ], "y_axis": [ -0.064, 0.631, 0.773 ], "z_axis": [ 0.285, -0.731, 0.620 ], "quaternion": [ 0.895, 0.420, 0.117, 0.091 ] } }, { "index": 1287, "index_chain": 1287, "chain_name": "A", "nt_resnum": 1365, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1365", "linked_nts": [ "///A/1364", "///A/1366" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -80.704, "beta": -152.674, "gamma": 58.705, "delta": 84.355, "epsilon": -151.861, "zeta": -61.504, "epsilon_zeta": -90.356, "bb_type": "BI", "chi": -166.187, "glyco_bond": "anti", "C5prime_xyz": [ -1.505, 8.687, 0.880 ], "P_xyz": [ 0.791, 9.055, 2.065 ], "form": ".", "ssZp": 4.394, "Dp": 4.476, "splay_angle": 27.028, "splay_distance": 4.287, "splay_ratio": 0.234, "d22": 4.270, "d64": 4.276, "eta": 176.871, "theta": -134.558, "eta_prime": -152.135, "theta_prime": -130.404, "eta_base": -129.483, "theta_base": -87.719, "v0": -1.147, "v1": -19.752, "v2": 31.832, "v3": -33.408, "v4": 21.851, "amplitude": 33.987, "phase_angle": 20.512, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.676, "filter_rmsd": 0.103, "frame": { "rmsd": 0.008, "origin": [ 166.153, 167.769, 231.170 ], "x_axis": [ 0.664, 0.743, 0.087 ], "y_axis": [ -0.096, 0.200, -0.975 ], "z_axis": [ -0.741, 0.639, 0.204 ], "quaternion": [ 0.719, -0.561, -0.288, 0.292 ] } }, { "index": 1288, "index_chain": 1288, "chain_name": "A", "nt_resnum": 1366, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1366", "linked_nts": [ "///A/1365", "///A/1367" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": -73.133, "beta": 176.482, "gamma": 56.856, "delta": 81.789, "epsilon": -131.512, "zeta": -71.506, "epsilon_zeta": -60.006, "bb_type": "BI", "chi": -158.536, "glyco_bond": "anti", "C5prime_xyz": [ -1.317, 8.780, 0.429 ], "P_xyz": [ 1.265, 9.197, 0.549 ], "form": ".", "ssZp": 4.297, "Dp": 4.682, "splay_angle": 29.329, "splay_distance": 4.586, "splay_ratio": 0.254, "d22": null, "d64": null, "eta": 169.075, "theta": -128.978, "eta_prime": -172.814, "theta_prime": -122.977, "eta_base": -116.392, "theta_base": -66.961, "v0": 0.733, "v1": -22.997, "v2": 35.214, "v3": -35.768, "v4": 22.090, "amplitude": 36.919, "phase_angle": 17.480, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.876, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 164.829, 171.647, 232.429 ], "x_axis": [ 0.390, 0.663, -0.639 ], "y_axis": [ -0.554, -0.386, -0.738 ], "z_axis": [ -0.736, 0.642, 0.216 ], "quaternion": [ 0.553, -0.624, -0.044, 0.550 ] } }, { "index": 1289, "index_chain": 1289, "chain_name": "A", "nt_resnum": 1367, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1367", "linked_nts": [ "///A/1366", "///A/1368" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -58.638, "beta": 159.224, "gamma": 60.370, "delta": 83.356, "epsilon": -168.537, "zeta": -110.944, "epsilon_zeta": -57.593, "bb_type": "BI", "chi": -139.251, "glyco_bond": "anti", "C5prime_xyz": [ -1.172, 8.661, -0.696 ], "P_xyz": [ 1.286, 8.587, -1.566 ], "form": ".", "ssZp": 3.762, "Dp": 4.474, "splay_angle": 108.234, "splay_distance": 12.455, "splay_ratio": 0.821, "d22": null, "d64": null, "eta": 163.588, "theta": 170.571, "eta_prime": -166.910, "theta_prime": 137.993, "eta_base": -92.690, "theta_base": 57.034, "v0": 3.353, "v1": -24.577, "v2": 35.254, "v3": -34.319, "v4": 19.588, "amplitude": 36.250, "phase_angle": 13.464, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.741, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 163.523, 174.929, 229.505 ], "x_axis": [ -0.234, 0.125, -0.964 ], "y_axis": [ -0.874, -0.462, 0.152 ], "z_axis": [ -0.426, 0.878, 0.217 ], "quaternion": [ 0.361, -0.503, 0.372, 0.692 ] } }, { "index": 1290, "index_chain": 1290, "chain_name": "A", "nt_resnum": 1368, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1368", "linked_nts": [ "///A/1367", "///A/1369" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart", "alpha": -159.551, "beta": 160.827, "gamma": 55.169, "delta": 143.926, "epsilon": -104.485, "zeta": -51.792, "epsilon_zeta": -52.694, "bb_type": "--", "chi": 50.229, "glyco_bond": "syn", "C5prime_xyz": [ -5.565, 4.101, 0.751 ], "P_xyz": [ -5.614, 1.556, 0.140 ], "form": ".", "ssZp": -1.110, "Dp": 1.109, "splay_angle": 70.815, "splay_distance": 11.376, "splay_ratio": 0.580, "d22": 8.883, "d64": 10.907, "eta": 87.637, "theta": -37.101, "eta_prime": 95.821, "theta_prime": -58.824, "eta_base": 98.316, "theta_base": -35.868, "v0": -25.762, "v1": 38.005, "v2": -34.994, "v3": 21.093, "v4": 2.687, "amplitude": 37.971, "phase_angle": 157.161, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1z", "suiteness": 0.439, "filter_rmsd": 0.105, "frame": { "rmsd": 0.008, "origin": [ 154.882, 168.808, 236.062 ], "x_axis": [ -0.065, -0.775, 0.628 ], "y_axis": [ 0.090, 0.623, 0.777 ], "z_axis": [ -0.994, 0.107, 0.029 ], "quaternion": [ 0.630, 0.266, -0.644, -0.343 ] } }, { "index": 1291, "index_chain": 1291, "chain_name": "A", "nt_resnum": 1369, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1369", "linked_nts": [ "///A/1368", "///A/1370" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop", "alpha": -85.197, "beta": -169.529, "gamma": 50.211, "delta": 83.099, "epsilon": -157.797, "zeta": -78.216, "epsilon_zeta": -79.581, "bb_type": "BI", "chi": -152.766, "glyco_bond": "anti", "C5prime_xyz": [ -1.329, 8.809, 0.098 ], "P_xyz": [ 1.158, 9.403, 0.660 ], "form": "A", "ssZp": 4.162, "Dp": 4.481, "splay_angle": 24.575, "splay_distance": 4.006, "splay_ratio": 0.213, "d22": 4.843, "d64": 5.037, "eta": 139.087, "theta": -157.930, "eta_prime": -174.245, "theta_prime": -156.576, "eta_base": -157.077, "theta_base": -145.772, "v0": 0.340, "v1": -21.445, "v2": 33.155, "v3": -33.881, "v4": 21.189, "amplitude": 34.874, "phase_angle": 18.066, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.649, "filter_rmsd": 0.061, "frame": { "rmsd": 0.009, "origin": [ 160.274, 176.745, 229.951 ], "x_axis": [ -0.975, -0.080, -0.206 ], "y_axis": [ -0.214, 0.106, 0.971 ], "z_axis": [ -0.056, 0.991, -0.120 ], "quaternion": [ 0.051, -0.099, 0.742, 0.661 ] } }, { "index": 1292, "index_chain": 1292, "chain_name": "A", "nt_resnum": 1370, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1370", "linked_nts": [ "///A/1369", "///A/1371" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop", "alpha": -64.557, "beta": 169.834, "gamma": 57.415, "delta": 79.764, "epsilon": -149.617, "zeta": -81.215, "epsilon_zeta": -68.402, "bb_type": "BI", "chi": -154.339, "glyco_bond": "anti", "C5prime_xyz": [ -1.574, 8.857, 0.142 ], "P_xyz": [ 0.950, 9.495, -0.052 ], "form": ".", "ssZp": 4.244, "Dp": 4.592, "splay_angle": 83.129, "splay_distance": 11.640, "splay_ratio": 0.664, "d22": null, "d64": null, "eta": 171.155, "theta": -159.934, "eta_prime": -179.849, "theta_prime": 175.772, "eta_base": -160.809, "theta_base": 109.163, "v0": -0.910, "v1": -22.052, "v2": 35.228, "v3": -36.748, "v4": 23.759, "amplitude": 37.478, "phase_angle": 19.955, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.900, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 161.243, 180.184, 228.139 ], "x_axis": [ -0.991, -0.067, 0.116 ], "y_axis": [ 0.101, 0.195, 0.976 ], "z_axis": [ -0.088, 0.979, -0.186 ], "quaternion": [ -0.066, 0.011, 0.770, 0.634 ] } }, { "index": 1293, "index_chain": 1293, "chain_name": "A", "nt_resnum": 1371, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1371", "linked_nts": [ "///A/1370", "///A/1372" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-pair-contact,internal-loop,splayed-apart", "alpha": -50.869, "beta": -155.347, "gamma": -76.624, "delta": 151.753, "epsilon": -100.016, "zeta": -61.053, "epsilon_zeta": -38.963, "bb_type": "--", "chi": 49.547, "glyco_bond": "syn", "C5prime_xyz": [ -5.414, 3.834, 0.592 ], "P_xyz": [ -7.781, 2.825, 1.087 ], "form": ".", "ssZp": -0.811, "Dp": 0.819, "splay_angle": 97.759, "splay_distance": 14.370, "splay_ratio": 0.754, "d22": null, "d64": null, "eta": 115.311, "theta": -79.107, "eta_prime": 103.996, "theta_prime": -79.384, "eta_base": 64.768, "theta_base": -39.942, "v0": -21.599, "v1": 37.339, "v2": -37.837, "v3": 26.343, "v4": -3.175, "amplitude": 39.025, "phase_angle": 165.822, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "1o", "suiteness": 0.629, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 171.701, 182.564, 232.660 ], "x_axis": [ 0.911, -0.092, -0.401 ], "y_axis": [ -0.232, 0.692, -0.684 ], "z_axis": [ 0.340, 0.716, 0.609 ], "quaternion": [ 0.896, -0.391, 0.207, 0.039 ] } }, { "index": 1294, "index_chain": 1294, "chain_name": "A", "nt_resnum": 1372, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1372", "linked_nts": [ "///A/1371", "///A/1373" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,splayed-apart", "alpha": -91.440, "beta": -148.245, "gamma": 59.452, "delta": 83.340, "epsilon": -154.364, "zeta": -66.227, "epsilon_zeta": -88.138, "bb_type": "BI", "chi": -178.211, "glyco_bond": "anti", "C5prime_xyz": [ -1.374, 8.499, 1.578 ], "P_xyz": [ 0.759, 8.372, 3.088 ], "form": "A", "ssZp": 4.455, "Dp": 4.519, "splay_angle": 24.862, "splay_distance": 3.875, "splay_ratio": 0.217, "d22": 4.834, "d64": 4.682, "eta": 154.030, "theta": -141.557, "eta_prime": -163.700, "theta_prime": -136.497, "eta_base": -162.286, "theta_base": -110.932, "v0": 1.392, "v1": -22.725, "v2": 34.159, "v3": -34.271, "v4": 20.762, "amplitude": 35.606, "phase_angle": 16.386, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.540, "filter_rmsd": 0.064, "frame": { "rmsd": 0.007, "origin": [ 157.377, 183.710, 232.714 ], "x_axis": [ 0.583, -0.032, 0.812 ], "y_axis": [ 0.804, 0.172, -0.570 ], "z_axis": [ -0.122, 0.985, 0.126 ], "quaternion": [ 0.686, -0.567, -0.340, -0.305 ] } }, { "index": 1295, "index_chain": 1295, "chain_name": "A", "nt_resnum": 1373, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1373", "linked_nts": [ "///A/1372", "///A/1374" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -71.128, "beta": -166.824, "gamma": 47.542, "delta": 84.054, "epsilon": -169.614, "zeta": -73.946, "epsilon_zeta": -95.668, "bb_type": "BI", "chi": -157.444, "glyco_bond": "anti", "C5prime_xyz": [ -1.192, 8.670, 0.400 ], "P_xyz": [ 1.267, 9.017, 1.238 ], "form": "A", "ssZp": 4.249, "Dp": 4.418, "splay_angle": 20.265, "splay_distance": 3.409, "splay_ratio": 0.182, "d22": 4.237, "d64": 4.432, "eta": 169.622, "theta": -130.444, "eta_prime": -176.905, "theta_prime": -136.866, "eta_base": -140.065, "theta_base": -111.489, "v0": 3.172, "v1": -23.806, "v2": 34.287, "v3": -33.397, "v4": 19.112, "amplitude": 35.276, "phase_angle": 13.600, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.775, "filter_rmsd": 0.103, "frame": { "rmsd": 0.008, "origin": [ 155.595, 186.723, 234.378 ], "x_axis": [ 0.943, 0.049, 0.329 ], "y_axis": [ 0.320, 0.143, -0.937 ], "z_axis": [ -0.093, 0.989, 0.119 ], "quaternion": [ 0.742, -0.648, -0.142, -0.091 ] } }, { "index": 1296, "index_chain": 1296, "chain_name": "A", "nt_resnum": 1374, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1374", "linked_nts": [ "///A/1373", "///A/1375" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 163.614, "beta": -156.383, "gamma": 161.523, "delta": 81.850, "epsilon": -104.607, "zeta": -126.420, "epsilon_zeta": 21.813, "bb_type": "--", "chi": -172.177, "glyco_bond": "anti", "C5prime_xyz": [ -1.176, 8.575, 1.267 ], "P_xyz": [ 0.809, 9.777, 0.061 ], "form": "A", "ssZp": 4.475, "Dp": 4.710, "splay_angle": 23.983, "splay_distance": 3.913, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 166.894, "theta": -139.098, "eta_prime": -179.524, "theta_prime": -145.608, "eta_base": -138.184, "theta_base": -121.157, "v0": 2.973, "v1": -24.542, "v2": 35.659, "v3": -34.938, "v4": 20.150, "amplitude": 36.768, "phase_angle": 14.103, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.465, "filter_rmsd": 0.063, "frame": { "rmsd": 0.005, "origin": [ 155.884, 189.370, 236.505 ], "x_axis": [ 0.973, 0.101, -0.208 ], "y_axis": [ -0.227, 0.233, -0.946 ], "z_axis": [ -0.047, 0.967, 0.249 ], "quaternion": [ 0.783, -0.610, 0.051, 0.105 ] } }, { "index": 1297, "index_chain": 1297, "chain_name": "A", "nt_resnum": 1375, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1375", "linked_nts": [ "///A/1374", "///A/1376" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 114.789, "beta": -113.813, "gamma": -177.589, "delta": 84.234, "epsilon": -84.248, "zeta": -130.086, "epsilon_zeta": 45.838, "bb_type": "--", "chi": 168.436, "glyco_bond": "anti", "C5prime_xyz": [ -1.799, 8.101, 2.227 ], "P_xyz": [ 0.073, 9.492, 1.042 ], "form": "A", "ssZp": 4.434, "Dp": 4.494, "splay_angle": 19.525, "splay_distance": 3.215, "splay_ratio": 0.171, "d22": null, "d64": null, "eta": 166.059, "theta": -138.824, "eta_prime": 179.448, "theta_prime": -148.845, "eta_base": -143.257, "theta_base": -120.103, "v0": 0.693, "v1": -21.960, "v2": 33.580, "v3": -34.109, "v4": 21.096, "amplitude": 35.207, "phase_angle": 17.483, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.044, "frame": { "rmsd": 0.015, "origin": [ 157.294, 192.698, 238.005 ], "x_axis": [ 0.687, -0.226, -0.691 ], "y_axis": [ -0.674, 0.157, -0.722 ], "z_axis": [ 0.272, 0.961, -0.044 ], "quaternion": [ 0.671, -0.627, 0.359, 0.167 ] } }, { "index": 1298, "index_chain": 1298, "chain_name": "A", "nt_resnum": 1376, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1376", "linked_nts": [ "///A/1375", "///A/1377" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": 91.646, "beta": -110.102, "gamma": -172.638, "delta": 81.363, "epsilon": -121.504, "zeta": -79.864, "epsilon_zeta": -41.640, "bb_type": "--", "chi": 173.991, "glyco_bond": "anti", "C5prime_xyz": [ -1.342, 8.213, 2.006 ], "P_xyz": [ 0.218, 9.605, 0.442 ], "form": "A", "ssZp": 4.757, "Dp": 4.773, "splay_angle": 26.648, "splay_distance": 4.320, "splay_ratio": 0.238, "d22": null, "d64": null, "eta": 141.294, "theta": -151.292, "eta_prime": 164.830, "theta_prime": -150.817, "eta_base": -144.462, "theta_base": -125.703, "v0": 5.200, "v1": -26.852, "v2": 37.227, "v3": -35.216, "v4": 18.919, "amplitude": 37.912, "phase_angle": 10.909, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 159.477, 195.049, 238.228 ], "x_axis": [ 0.182, -0.153, -0.971 ], "y_axis": [ -0.901, 0.370, -0.227 ], "z_axis": [ 0.394, 0.916, -0.070 ], "quaternion": [ 0.609, -0.470, 0.561, 0.307 ] } }, { "index": 1299, "index_chain": 1299, "chain_name": "A", "nt_resnum": 1377, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1377", "linked_nts": [ "///A/1376", "///A/1378" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,junction-loop,A-minor", "alpha": -57.870, "beta": 165.701, "gamma": 61.640, "delta": 80.803, "epsilon": -153.852, "zeta": -69.357, "epsilon_zeta": -84.496, "bb_type": "BI", "chi": -161.459, "glyco_bond": "anti", "C5prime_xyz": [ -1.796, 8.844, 0.562 ], "P_xyz": [ 0.710, 9.587, 0.538 ], "form": "A", "ssZp": 4.348, "Dp": 4.476, "splay_angle": 24.575, "splay_distance": 3.894, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 170.490, "theta": -145.778, "eta_prime": -169.712, "theta_prime": -146.390, "eta_base": -128.072, "theta_base": -108.457, "v0": -3.420, "v1": -19.416, "v2": 33.446, "v3": -36.393, "v4": 25.083, "amplitude": 36.565, "phase_angle": 23.837, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.545, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 162.921, 197.284, 236.887 ], "x_axis": [ -0.357, 0.129, -0.925 ], "y_axis": [ -0.808, 0.455, 0.375 ], "z_axis": [ 0.469, 0.881, -0.059 ], "quaternion": [ 0.510, -0.248, 0.684, 0.459 ] } }, { "index": 1300, "index_chain": 1300, "chain_name": "A", "nt_resnum": 1378, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1378", "linked_nts": [ "///A/1377", "///A/1379" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate", "alpha": -72.308, "beta": 169.404, "gamma": 62.254, "delta": 82.305, "epsilon": -149.827, "zeta": -91.205, "epsilon_zeta": -58.622, "bb_type": "BI", "chi": -162.321, "glyco_bond": "anti", "C5prime_xyz": [ -1.449, 8.707, 0.647 ], "P_xyz": [ 1.124, 9.152, 0.509 ], "form": ".", "ssZp": 4.470, "Dp": 4.614, "splay_angle": 36.891, "splay_distance": 5.851, "splay_ratio": 0.319, "d22": null, "d64": null, "eta": 166.126, "theta": -164.884, "eta_prime": -176.897, "theta_prime": -150.824, "eta_base": -121.837, "theta_base": -165.331, "v0": 2.130, "v1": -24.220, "v2": 35.812, "v3": -35.605, "v4": 21.078, "amplitude": 37.143, "phase_angle": 15.387, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.829, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 164.455, 200.327, 235.002 ], "x_axis": [ -0.792, 0.395, -0.467 ], "y_axis": [ -0.371, 0.296, 0.880 ], "z_axis": [ 0.485, 0.870, -0.088 ], "quaternion": [ 0.323, 0.008, 0.738, 0.593 ] } }, { "index": 1301, "index_chain": 1301, "chain_name": "A", "nt_resnum": 1379, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1379", "linked_nts": [ "///A/1378", "///A/1380" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": -79.220, "beta": -154.334, "gamma": 66.293, "delta": 148.995, "epsilon": -110.938, "zeta": -60.665, "epsilon_zeta": -50.273, "bb_type": "--", "chi": -111.924, "glyco_bond": "anti", "C5prime_xyz": [ -2.268, 8.342, -1.594 ], "P_xyz": [ 0.009, 9.488, -0.988 ], "form": ".", "ssZp": 1.147, "Dp": 1.136, "splay_angle": 133.474, "splay_distance": 17.169, "splay_ratio": 0.919, "d22": 8.815, "d64": 11.056, "eta": -158.948, "theta": -25.752, "eta_prime": -151.994, "theta_prime": -44.262, "eta_base": -173.499, "theta_base": -5.047, "v0": -23.711, "v1": 38.170, "v2": -37.215, "v3": 24.481, "v4": -0.672, "amplitude": 39.082, "phase_angle": 162.221, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.459, "filter_rmsd": 0.099, "frame": { "rmsd": 0.010, "origin": [ 169.713, 202.509, 233.650 ], "x_axis": [ -0.933, -0.161, -0.322 ], "y_axis": [ -0.359, 0.374, 0.855 ], "z_axis": [ -0.017, 0.913, -0.407 ], "quaternion": [ 0.092, -0.158, 0.824, 0.537 ] } }, { "index": 1302, "index_chain": 1302, "chain_name": "A", "nt_resnum": 1380, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1380", "linked_nts": [ "///A/1379", "///A/1381" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": -124.163, "beta": -148.670, "gamma": 120.630, "delta": 148.339, "epsilon": -100.069, "zeta": -67.862, "epsilon_zeta": -32.206, "bb_type": "--", "chi": -156.912, "glyco_bond": "anti", "C5prime_xyz": [ -1.939, 8.591, 0.777 ], "P_xyz": [ 0.568, 8.572, 1.518 ], "form": ".", "ssZp": 0.797, "Dp": 0.918, "splay_angle": 97.971, "splay_distance": 14.185, "splay_ratio": 0.755, "d22": null, "d64": null, "eta": -169.643, "theta": -48.609, "eta_prime": -112.536, "theta_prime": -71.192, "eta_base": -123.013, "theta_base": -49.628, "v0": -21.401, "v1": 35.770, "v2": -35.622, "v3": 24.224, "v4": -1.984, "amplitude": 37.016, "phase_angle": 164.229, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.100, "frame": { "rmsd": 0.009, "origin": [ 168.215, 209.843, 249.100 ], "x_axis": [ -0.269, -0.960, 0.080 ], "y_axis": [ 0.351, -0.175, -0.920 ], "z_axis": [ 0.897, -0.219, 0.384 ], "quaternion": [ -0.485, 0.361, -0.421, 0.676 ] } }, { "index": 1303, "index_chain": 1303, "chain_name": "A", "nt_resnum": 1381, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1381", "linked_nts": [ "///A/1380", "///A/1382" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart", "alpha": -76.115, "beta": -167.411, "gamma": 78.930, "delta": 149.961, "epsilon": -91.991, "zeta": -124.352, "epsilon_zeta": 32.361, "bb_type": "--", "chi": -98.984, "glyco_bond": "anti", "C5prime_xyz": [ -2.262, 7.944, -2.144 ], "P_xyz": [ 0.273, 8.566, -2.373 ], "form": ".", "ssZp": 0.434, "Dp": 0.653, "splay_angle": 107.544, "splay_distance": 15.172, "splay_ratio": 0.808, "d22": null, "d64": null, "eta": -165.903, "theta": -73.824, "eta_prime": -111.661, "theta_prime": -136.402, "eta_base": -101.915, "theta_base": 174.033, "v0": -20.634, "v1": 35.937, "v2": -36.654, "v3": 25.664, "v4": -3.354, "amplitude": 37.732, "phase_angle": 166.274, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.188, "filter_rmsd": 0.040, "frame": { "rmsd": 0.014, "origin": [ 180.507, 209.246, 242.044 ], "x_axis": [ -0.360, -0.463, -0.810 ], "y_axis": [ -0.645, 0.751, -0.142 ], "z_axis": [ 0.674, 0.471, -0.569 ], "quaternion": [ 0.453, -0.338, 0.819, 0.101 ] } }, { "index": 1304, "index_chain": 1304, "chain_name": "A", "nt_resnum": 1382, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1382", "linked_nts": [ "///A/1381", "///A/1383" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,turn,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,splayed-apart", "alpha": 66.474, "beta": -175.242, "gamma": 58.750, "delta": 85.124, "epsilon": -100.995, "zeta": -101.692, "epsilon_zeta": 0.698, "bb_type": "--", "chi": 152.188, "glyco_bond": "--", "C5prime_xyz": [ -2.245, 7.772, 2.789 ], "P_xyz": [ -0.493, 7.314, 4.689 ], "form": ".", "ssZp": 4.004, "Dp": 4.379, "splay_angle": 21.863, "splay_distance": 3.376, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": -42.679, "theta": -130.746, "eta_prime": 1.883, "theta_prime": -116.140, "eta_base": 50.480, "theta_base": -94.166, "v0": -3.227, "v1": -17.563, "v2": 30.381, "v3": -33.099, "v4": 22.937, "amplitude": 33.265, "phase_angle": 24.036, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "8d", "suiteness": 0.912, "filter_rmsd": 0.019, "frame": { "rmsd": 0.019, "origin": [ 184.147, 221.454, 250.283 ], "x_axis": [ -0.600, 0.194, 0.776 ], "y_axis": [ -0.750, 0.199, -0.631 ], "z_axis": [ -0.277, -0.961, 0.027 ], "quaternion": [ -0.395, -0.209, 0.666, -0.598 ] } }, { "index": 1305, "index_chain": 1305, "chain_name": "A", "nt_resnum": 1383, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1383", "linked_nts": [ "///A/1382", "///A/1384" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor,phosphate,splayed-apart", "alpha": -63.380, "beta": 162.069, "gamma": 62.922, "delta": 148.265, "epsilon": -88.512, "zeta": -103.440, "epsilon_zeta": 14.928, "bb_type": "--", "chi": -136.522, "glyco_bond": "anti", "C5prime_xyz": [ -1.667, 8.627, -0.290 ], "P_xyz": [ 0.843, 8.772, 0.450 ], "form": ".", "ssZp": 0.687, "Dp": 0.768, "splay_angle": 99.810, "splay_distance": 15.091, "splay_ratio": 0.765, "d22": 7.460, "d64": 8.548, "eta": -171.779, "theta": -31.550, "eta_prime": -143.509, "theta_prime": -59.505, "eta_base": -121.303, "theta_base": -32.402, "v0": -18.694, "v1": 33.566, "v2": -34.783, "v3": 24.877, "v4": -4.088, "amplitude": 35.597, "phase_angle": 167.724, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.067, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 184.672, 218.157, 250.785 ], "x_axis": [ -0.898, 0.391, 0.200 ], "y_axis": [ -0.232, -0.034, -0.972 ], "z_axis": [ -0.373, -0.920, 0.122 ], "quaternion": [ 0.217, -0.060, -0.660, 0.717 ] } }, { "index": 1306, "index_chain": 1306, "chain_name": "A", "nt_resnum": 1384, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1384", "linked_nts": [ "///A/1383", "///A/1385" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,splayed-apart", "alpha": 46.409, "beta": 124.633, "gamma": -40.894, "delta": 86.982, "epsilon": -154.379, "zeta": -63.981, "epsilon_zeta": -90.399, "bb_type": "BI", "chi": -173.955, "glyco_bond": "anti", "C5prime_xyz": [ -1.157, 8.540, 1.377 ], "P_xyz": [ -0.168, 8.808, 3.796 ], "form": "A", "ssZp": 4.372, "Dp": 4.441, "splay_angle": 23.810, "splay_distance": 3.770, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 128.004, "theta": -148.084, "eta_prime": 167.203, "theta_prime": -140.404, "eta_base": -166.726, "theta_base": -109.023, "v0": 1.616, "v1": -21.090, "v2": 31.395, "v3": -31.307, "v4": 18.791, "amplitude": 32.632, "phase_angle": 15.827, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.009, "origin": [ 179.493, 212.195, 237.925 ], "x_axis": [ -0.480, 0.725, 0.493 ], "y_axis": [ 0.735, 0.027, 0.677 ], "z_axis": [ 0.478, 0.688, -0.546 ], "quaternion": [ -0.005, 0.510, 0.716, 0.476 ] } }, { "index": 1307, "index_chain": 1307, "chain_name": "A", "nt_resnum": 1385, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1385", "linked_nts": [ "///A/1384", "///A/1386" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -96.880, "beta": -163.208, "gamma": 51.455, "delta": 80.645, "epsilon": -155.321, "zeta": -66.022, "epsilon_zeta": -89.299, "bb_type": "BI", "chi": -171.408, "glyco_bond": "anti", "C5prime_xyz": [ -1.416, 8.586, 1.168 ], "P_xyz": [ 0.977, 8.966, 2.161 ], "form": "A", "ssZp": 4.628, "Dp": 4.629, "splay_angle": 21.431, "splay_distance": 3.475, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 150.350, "theta": -147.168, "eta_prime": 163.014, "theta_prime": -143.983, "eta_base": -158.596, "theta_base": -119.955, "v0": 3.385, "v1": -25.662, "v2": 36.918, "v3": -35.970, "v4": 20.563, "amplitude": 37.983, "phase_angle": 13.599, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.242, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 179.918, 214.473, 234.951 ], "x_axis": [ -0.143, 0.366, 0.920 ], "y_axis": [ 0.835, -0.454, 0.311 ], "z_axis": [ 0.532, 0.812, -0.240 ], "quaternion": [ -0.201, 0.623, 0.482, 0.583 ] } }, { "index": 1308, "index_chain": 1308, "chain_name": "A", "nt_resnum": 1386, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1386", "linked_nts": [ "///A/1385", "///A/1387" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -71.928, "beta": -175.190, "gamma": 51.270, "delta": 79.408, "epsilon": -153.586, "zeta": -68.846, "epsilon_zeta": -84.740, "bb_type": "BI", "chi": -162.950, "glyco_bond": "anti", "C5prime_xyz": [ -1.471, 8.744, 0.660 ], "P_xyz": [ 1.028, 9.335, 1.149 ], "form": "A", "ssZp": 4.496, "Dp": 4.622, "splay_angle": 25.829, "splay_distance": 4.181, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 165.820, "theta": -148.472, "eta_prime": 177.521, "theta_prime": -146.408, "eta_base": -146.035, "theta_base": -123.292, "v0": 1.690, "v1": -24.885, "v2": 37.361, "v3": -37.375, "v4": 22.469, "amplitude": 38.893, "phase_angle": 16.137, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.892, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 179.515, 217.870, 234.342 ], "x_axis": [ 0.276, -0.014, 0.961 ], "y_axis": [ 0.831, -0.499, -0.246 ], "z_axis": [ 0.483, 0.867, -0.126 ], "quaternion": [ -0.404, 0.689, 0.296, 0.524 ] } }, { "index": 1309, "index_chain": 1309, "chain_name": "A", "nt_resnum": 1387, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1387", "linked_nts": [ "///A/1386", "///A/1388" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,junction-loop,phosphate", "alpha": -67.737, "beta": 178.838, "gamma": 56.208, "delta": 80.789, "epsilon": -128.738, "zeta": -95.905, "epsilon_zeta": -32.834, "bb_type": "--", "chi": -174.383, "glyco_bond": "anti", "C5prime_xyz": [ -1.746, 8.705, 1.297 ], "P_xyz": [ 0.630, 9.317, 2.203 ], "form": ".", "ssZp": 4.505, "Dp": 4.574, "splay_angle": 19.434, "splay_distance": 3.028, "splay_ratio": 0.174, "d22": null, "d64": null, "eta": 175.589, "theta": -131.331, "eta_prime": -175.391, "theta_prime": -143.827, "eta_base": -143.316, "theta_base": -92.788, "v0": -3.322, "v1": -19.472, "v2": 33.517, "v3": -36.356, "v4": 25.060, "amplitude": 36.602, "phase_angle": 23.693, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.957, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 179.992, 221.911, 235.304 ], "x_axis": [ 0.425, -0.562, 0.710 ], "y_axis": [ 0.510, -0.499, -0.700 ], "z_axis": [ 0.748, 0.660, 0.075 ], "quaternion": [ 0.500, -0.680, 0.019, -0.536 ] } }, { "index": 1310, "index_chain": 1310, "chain_name": "A", "nt_resnum": 1388, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1388", "linked_nts": [ "///A/1387", "///A/1389" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,non-pair-contact,junction-loop", "alpha": 65.970, "beta": -164.020, "gamma": -97.159, "delta": 80.619, "epsilon": -149.847, "zeta": 67.310, "epsilon_zeta": 142.844, "bb_type": "--", "chi": 13.148, "glyco_bond": "syn", "C5prime_xyz": [ -5.327, 3.488, -0.973 ], "P_xyz": [ -7.771, 2.597, -1.256 ], "form": ".", "ssZp": -4.561, "Dp": 4.605, "splay_angle": 76.800, "splay_distance": 12.387, "splay_ratio": 0.633, "d22": null, "d64": null, "eta": 160.504, "theta": -22.612, "eta_prime": 161.066, "theta_prime": -46.123, "eta_base": -130.920, "theta_base": -52.806, "v0": 1.519, "v1": -23.759, "v2": 35.687, "v3": -35.861, "v4": 21.660, "amplitude": 37.193, "phase_angle": 16.361, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 182.662, 223.160, 235.995 ], "x_axis": [ -0.313, 0.314, 0.896 ], "y_axis": [ -0.330, 0.849, -0.412 ], "z_axis": [ -0.890, -0.425, -0.163 ], "quaternion": [ 0.586, 0.005, -0.762, 0.275 ] } }, { "index": 1311, "index_chain": 1311, "chain_name": "A", "nt_resnum": 1389, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1389", "linked_nts": [ "///A/1388", "///A/1390" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop,ribose-zipper", "alpha": 72.753, "beta": 118.611, "gamma": -159.673, "delta": 79.602, "epsilon": -143.908, "zeta": -74.118, "epsilon_zeta": -69.791, "bb_type": "BI", "chi": -178.447, "glyco_bond": "anti", "C5prime_xyz": [ -1.326, 8.450, 1.582 ], "P_xyz": [ -1.749, 11.034, 1.655 ], "form": "A", "ssZp": 4.738, "Dp": 4.717, "splay_angle": 26.516, "splay_distance": 4.295, "splay_ratio": 0.239, "d22": 4.757, "d64": 5.238, "eta": 91.842, "theta": 155.220, "eta_prime": 120.049, "theta_prime": 175.282, "eta_base": 163.507, "theta_base": -154.973, "v0": 3.694, "v1": -26.464, "v2": 37.959, "v3": -36.807, "v4": 20.867, "amplitude": 38.998, "phase_angle": 13.253, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "5j", "suiteness": 0.190, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 193.145, 219.840, 230.292 ], "x_axis": [ -0.676, -0.733, -0.078 ], "y_axis": [ -0.732, 0.655, 0.184 ], "z_axis": [ -0.084, 0.182, -0.980 ], "quaternion": [ -0.002, -0.403, 0.910, 0.101 ] } }, { "index": 1312, "index_chain": 1312, "chain_name": "A", "nt_resnum": 1390, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1390", "linked_nts": [ "///A/1389", "///A/1391" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,ribose-zipper", "alpha": -60.073, "beta": -178.608, "gamma": 52.084, "delta": 81.416, "epsilon": -143.697, "zeta": -72.097, "epsilon_zeta": -71.600, "bb_type": "BI", "chi": -167.571, "glyco_bond": "anti", "C5prime_xyz": [ -1.610, 8.777, 0.925 ], "P_xyz": [ 0.780, 9.413, 1.755 ], "form": "A", "ssZp": 4.433, "Dp": 4.535, "splay_angle": 20.883, "splay_distance": 3.372, "splay_ratio": 0.182, "d22": 4.139, "d64": 4.218, "eta": 177.235, "theta": -147.113, "eta_prime": -172.959, "theta_prime": -147.355, "eta_base": -147.423, "theta_base": -119.227, "v0": -2.707, "v1": -19.820, "v2": 33.390, "v3": -35.909, "v4": 24.373, "amplitude": 36.216, "phase_angle": 22.786, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.950, "filter_rmsd": 0.060, "frame": { "rmsd": 0.011, "origin": [ 194.577, 218.396, 226.509 ], "x_axis": [ -0.913, -0.363, 0.186 ], "y_axis": [ -0.322, 0.921, 0.218 ], "z_axis": [ -0.251, 0.139, -0.958 ], "quaternion": [ -0.112, -0.176, 0.974, 0.092 ] } }, { "index": 1313, "index_chain": 1313, "chain_name": "A", "nt_resnum": 1391, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1391", "linked_nts": [ "///A/1390", "///A/1392" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -92.493, "beta": 150.280, "gamma": 91.419, "delta": 81.097, "epsilon": -166.395, "zeta": -77.300, "epsilon_zeta": -89.095, "bb_type": "BI", "chi": -178.669, "glyco_bond": "anti", "C5prime_xyz": [ -1.642, 8.523, 1.552 ], "P_xyz": [ 0.760, 9.359, 0.972 ], "form": ".", "ssZp": 4.348, "Dp": 4.433, "splay_angle": 38.650, "splay_distance": 5.893, "splay_ratio": 0.334, "d22": null, "d64": null, "eta": 158.992, "theta": -165.764, "eta_prime": -179.755, "theta_prime": -171.149, "eta_base": -132.750, "theta_base": -162.338, "v0": -0.753, "v1": -22.006, "v2": 35.008, "v3": -36.415, "v4": 23.435, "amplitude": 37.186, "phase_angle": 19.709, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.009, "origin": [ 193.794, 217.369, 223.394 ], "x_axis": [ -0.945, 0.147, 0.292 ], "y_axis": [ 0.168, 0.984, 0.050 ], "z_axis": [ -0.280, 0.096, -0.955 ], "quaternion": [ -0.145, 0.080, 0.985, 0.037 ] } }, { "index": 1314, "index_chain": 1314, "chain_name": "A", "nt_resnum": 1392, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1392", "linked_nts": [ "///A/1391", "///A/1393" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper,phosphate", "alpha": -73.347, "beta": -171.746, "gamma": 65.179, "delta": 81.747, "epsilon": -123.402, "zeta": -83.922, "epsilon_zeta": -39.480, "bb_type": "--", "chi": 169.333, "glyco_bond": "anti", "C5prime_xyz": [ -1.981, 8.262, 2.117 ], "P_xyz": [ 0.204, 8.519, 3.532 ], "form": "A", "ssZp": 4.450, "Dp": 4.548, "splay_angle": 23.591, "splay_distance": 3.613, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": -169.815, "theta": -137.498, "eta_prime": -170.021, "theta_prime": -133.300, "eta_base": -159.241, "theta_base": -89.741, "v0": -3.417, "v1": -18.970, "v2": 32.732, "v3": -35.612, "v4": 24.644, "amplitude": 35.810, "phase_angle": 23.930, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.605, "filter_rmsd": 0.043, "frame": { "rmsd": 0.012, "origin": [ 194.838, 214.161, 218.562 ], "x_axis": [ -0.845, 0.293, 0.448 ], "y_axis": [ 0.453, 0.837, 0.308 ], "z_axis": [ -0.285, 0.463, -0.839 ], "quaternion": [ -0.195, 0.199, 0.938, 0.205 ] } }, { "index": 1315, "index_chain": 1315, "chain_name": "A", "nt_resnum": 1393, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1393", "linked_nts": [ "///A/1392", "///A/1394" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper", "alpha": -75.751, "beta": 160.036, "gamma": 63.737, "delta": 85.846, "epsilon": -114.989, "zeta": -70.326, "epsilon_zeta": -44.663, "bb_type": "--", "chi": -175.215, "glyco_bond": "anti", "C5prime_xyz": [ -1.466, 8.476, 1.420 ], "P_xyz": [ 1.131, 8.672, 1.658 ], "form": ".", "ssZp": 4.495, "Dp": 4.607, "splay_angle": 39.932, "splay_distance": 6.210, "splay_ratio": 0.342, "d22": null, "d64": null, "eta": 165.096, "theta": -111.671, "eta_prime": -179.727, "theta_prime": -107.547, "eta_base": -124.722, "theta_base": -63.363, "v0": 1.118, "v1": -21.560, "v2": 32.564, "v3": -32.848, "v4": 20.042, "amplitude": 34.011, "phase_angle": 16.776, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.496, "filter_rmsd": 0.043, "frame": { "rmsd": 0.012, "origin": [ 192.652, 215.276, 215.912 ], "x_axis": [ -0.243, 0.775, 0.583 ], "y_axis": [ 0.938, 0.341, -0.062 ], "z_axis": [ -0.246, 0.532, -0.810 ], "quaternion": [ -0.268, 0.554, 0.774, 0.152 ] } }, { "index": 1316, "index_chain": 1316, "chain_name": "A", "nt_resnum": 1394, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1394", "linked_nts": [ "///A/1393", "///A/1395" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -62.382, "beta": 151.181, "gamma": 68.410, "delta": 83.786, "epsilon": -154.381, "zeta": -68.526, "epsilon_zeta": -85.855, "bb_type": "BI", "chi": -167.657, "glyco_bond": "anti", "C5prime_xyz": [ -1.365, 8.680, 0.977 ], "P_xyz": [ 1.209, 8.930, 0.577 ], "form": "A", "ssZp": 4.471, "Dp": 4.522, "splay_angle": 25.218, "splay_distance": 3.983, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 158.467, "theta": -140.255, "eta_prime": -165.916, "theta_prime": -144.855, "eta_base": -93.654, "theta_base": -119.783, "v0": 0.766, "v1": -21.983, "v2": 33.560, "v3": -34.059, "v4": 21.035, "amplitude": 35.167, "phase_angle": 17.389, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.268, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 192.588, 221.335, 214.551 ], "x_axis": [ 0.746, 0.621, 0.242 ], "y_axis": [ 0.640, -0.568, -0.517 ], "z_axis": [ -0.184, 0.541, -0.821 ], "quaternion": [ -0.299, 0.885, 0.356, 0.017 ] } }, { "index": 1317, "index_chain": 1317, "chain_name": "A", "nt_resnum": 1395, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1395", "linked_nts": [ "///A/1394", "///A/1396" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -69.067, "beta": 173.413, "gamma": 61.418, "delta": 82.922, "epsilon": -153.802, "zeta": -65.080, "epsilon_zeta": -88.723, "bb_type": "BI", "chi": -164.420, "glyco_bond": "anti", "C5prime_xyz": [ -1.353, 8.758, 0.781 ], "P_xyz": [ 1.228, 9.145, 1.031 ], "form": "A", "ssZp": 4.411, "Dp": 4.508, "splay_angle": 21.927, "splay_distance": 3.662, "splay_ratio": 0.195, "d22": 4.214, "d64": 4.442, "eta": 171.599, "theta": -139.968, "eta_prime": -171.699, "theta_prime": -142.005, "eta_base": -127.287, "theta_base": -123.068, "v0": -0.263, "v1": -21.232, "v2": 33.396, "v3": -34.445, "v4": 21.913, "amplitude": 35.320, "phase_angle": 18.999, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.862, "filter_rmsd": 0.061, "frame": { "rmsd": 0.008, "origin": [ 191.714, 224.612, 212.461 ], "x_axis": [ 0.976, 0.185, -0.119 ], "y_axis": [ 0.093, -0.836, -0.541 ], "z_axis": [ -0.199, 0.517, -0.833 ], "quaternion": [ -0.277, 0.954, 0.073, -0.083 ] } }, { "index": 1318, "index_chain": 1318, "chain_name": "A", "nt_resnum": 1396, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1396", "linked_nts": [ "///A/1395", "///A/1397" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -71.611, "beta": 179.806, "gamma": 52.677, "delta": 79.877, "epsilon": -149.459, "zeta": -63.356, "epsilon_zeta": -86.103, "bb_type": "BI", "chi": -161.743, "glyco_bond": "anti", "C5prime_xyz": [ -1.741, 8.881, 0.562 ], "P_xyz": [ 0.677, 9.718, 1.090 ], "form": ".", "ssZp": 4.373, "Dp": 4.512, "splay_angle": 31.584, "splay_distance": 4.892, "splay_ratio": 0.272, "d22": null, "d64": null, "eta": 165.237, "theta": -139.600, "eta_prime": 178.860, "theta_prime": -134.920, "eta_base": -146.522, "theta_base": -81.451, "v0": -4.440, "v1": -18.792, "v2": 33.422, "v3": -36.902, "v4": 26.071, "amplitude": 36.967, "phase_angle": 25.299, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.925, "filter_rmsd": 0.058, "frame": { "rmsd": 0.008, "origin": [ 191.550, 227.849, 210.755 ], "x_axis": [ 0.915, -0.341, -0.215 ], "y_axis": [ -0.403, -0.801, -0.442 ], "z_axis": [ -0.022, 0.492, -0.871 ], "quaternion": [ -0.247, 0.947, -0.196, -0.063 ] } }, { "index": 1319, "index_chain": 1319, "chain_name": "A", "nt_resnum": 1397, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1397", "linked_nts": [ "///A/1396", "///A/1398" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -74.963, "beta": 166.857, "gamma": 66.319, "delta": 82.719, "epsilon": 171.246, "zeta": -101.643, "epsilon_zeta": -87.111, "bb_type": "BI", "chi": -164.446, "glyco_bond": "anti", "C5prime_xyz": [ -1.062, 8.584, 0.801 ], "P_xyz": [ 1.535, 8.700, 0.509 ], "form": ".", "ssZp": 4.332, "Dp": 4.339, "splay_angle": 79.179, "splay_distance": 11.773, "splay_ratio": 0.639, "d22": null, "d64": null, "eta": 161.325, "theta": 155.550, "eta_prime": -169.122, "theta_prime": 152.654, "eta_base": -93.670, "theta_base": 158.710, "v0": 5.930, "v1": -26.776, "v2": 36.203, "v3": -33.806, "v4": 17.650, "amplitude": 36.712, "phase_angle": 9.553, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.665, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 193.780, 227.801, 206.402 ], "x_axis": [ 0.191, -0.851, -0.488 ], "y_axis": [ -0.982, -0.169, -0.090 ], "z_axis": [ -0.006, 0.496, -0.868 ], "quaternion": [ -0.196, 0.746, -0.614, -0.166 ] } }, { "index": 1320, "index_chain": 1320, "chain_name": "A", "nt_resnum": 1398, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1398", "linked_nts": [ "///A/1397", "///A/1399" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate", "alpha": -42.664, "beta": -154.084, "gamma": 41.913, "delta": 80.179, "epsilon": -148.272, "zeta": -54.796, "epsilon_zeta": -93.476, "bb_type": "BI", "chi": -152.986, "glyco_bond": "anti", "C5prime_xyz": [ -1.538, 8.768, 0.085 ], "P_xyz": [ 0.697, 9.704, 1.046 ], "form": ".", "ssZp": 4.184, "Dp": 4.601, "splay_angle": 34.599, "splay_distance": 5.844, "splay_ratio": 0.302, "d22": null, "d64": null, "eta": -153.554, "theta": -104.831, "eta_prime": -171.728, "theta_prime": -106.570, "eta_base": 163.839, "theta_base": -57.790, "v0": 0.159, "v1": -22.503, "v2": 35.020, "v3": -35.937, "v4": 22.598, "amplitude": 36.909, "phase_angle": 18.409, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.408, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 191.606, 239.286, 207.802 ], "x_axis": [ 0.822, -0.500, -0.272 ], "y_axis": [ -0.566, -0.770, -0.295 ], "z_axis": [ -0.062, 0.396, -0.916 ], "quaternion": [ -0.184, 0.937, -0.284, -0.089 ] } }, { "index": 1321, "index_chain": 1321, "chain_name": "A", "nt_resnum": 1399, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1399", "linked_nts": [ "///A/1398", "///A/1400" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor", "alpha": 149.772, "beta": -165.049, "gamma": 177.203, "delta": 78.728, "epsilon": -124.262, "zeta": -33.979, "epsilon_zeta": -90.283, "bb_type": "--", "chi": -154.312, "glyco_bond": "anti", "C5prime_xyz": [ -0.912, 8.686, 0.153 ], "P_xyz": [ 0.203, 10.050, -1.784 ], "form": ".", "ssZp": 4.094, "Dp": 4.820, "splay_angle": 53.796, "splay_distance": 8.380, "splay_ratio": 0.453, "d22": null, "d64": null, "eta": 154.575, "theta": -117.996, "eta_prime": -176.184, "theta_prime": -109.489, "eta_base": -105.917, "theta_base": -69.761, "v0": 6.228, "v1": -29.009, "v2": 39.767, "v3": -37.140, "v4": 19.468, "amplitude": 40.369, "phase_angle": 9.904, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.746, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 194.899, 236.161, 204.123 ], "x_axis": [ 0.026, -0.928, -0.372 ], "y_axis": [ -0.943, 0.100, -0.317 ], "z_axis": [ 0.331, 0.359, -0.872 ], "quaternion": [ 0.252, -0.671, 0.698, 0.015 ] } }, { "index": 1322, "index_chain": 1322, "chain_name": "A", "nt_resnum": 1400, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1400", "linked_nts": [ "///A/1399", "///A/1401" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop,cap-donor", "alpha": -74.060, "beta": -175.361, "gamma": 58.225, "delta": 79.307, "epsilon": -154.649, "zeta": -73.096, "epsilon_zeta": -81.552, "bb_type": "BI", "chi": -171.004, "glyco_bond": "anti", "C5prime_xyz": [ -1.535, 8.725, 1.150 ], "P_xyz": [ 0.917, 9.238, 1.937 ], "form": "A", "ssZp": 4.509, "Dp": 4.542, "splay_angle": 24.155, "splay_distance": 3.788, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": 159.954, "theta": -152.084, "eta_prime": -161.279, "theta_prime": -149.153, "eta_base": -92.910, "theta_base": -121.932, "v0": -0.947, "v1": -22.034, "v2": 35.348, "v3": -36.843, "v4": 23.826, "amplitude": 37.615, "phase_angle": 19.993, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.174, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 191.284, 230.594, 199.008 ], "x_axis": [ -0.973, -0.161, 0.167 ], "y_axis": [ -0.138, 0.980, 0.140 ], "z_axis": [ -0.187, 0.113, -0.976 ], "quaternion": [ -0.089, -0.075, 0.991, 0.064 ] } }, { "index": 1323, "index_chain": 1323, "chain_name": "A", "nt_resnum": 1401, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1401", "linked_nts": [ "///A/1400", "///A/1402" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor,ribose-zipper", "alpha": -60.633, "beta": 178.908, "gamma": 48.554, "delta": 81.953, "epsilon": -159.453, "zeta": -80.102, "epsilon_zeta": -79.351, "bb_type": "BI", "chi": -165.822, "glyco_bond": "anti", "C5prime_xyz": [ -1.272, 8.694, 0.892 ], "P_xyz": [ 1.213, 8.999, 1.641 ], "form": "A", "ssZp": 4.424, "Dp": 4.502, "splay_angle": 24.843, "splay_distance": 4.083, "splay_ratio": 0.220, "d22": 4.283, "d64": 4.568, "eta": 171.398, "theta": -127.570, "eta_prime": -176.997, "theta_prime": -132.071, "eta_base": -138.481, "theta_base": -104.019, "v0": 1.564, "v1": -23.373, "v2": 35.128, "v3": -35.231, "v4": 21.249, "amplitude": 36.593, "phase_angle": 16.265, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.921, "filter_rmsd": 0.063, "frame": { "rmsd": 0.007, "origin": [ 190.553, 229.238, 195.547 ], "x_axis": [ -0.869, 0.391, 0.301 ], "y_axis": [ 0.428, 0.901, 0.066 ], "z_axis": [ -0.246, 0.186, -0.951 ], "quaternion": [ -0.142, 0.212, 0.965, 0.065 ] } }, { "index": 1324, "index_chain": 1324, "chain_name": "A", "nt_resnum": 1402, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1402", "linked_nts": [ "///A/1401", "///A/1403" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop,ribose-zipper", "alpha": 169.762, "beta": -151.400, "gamma": 158.604, "delta": 81.551, "epsilon": -124.758, "zeta": -84.178, "epsilon_zeta": -40.580, "bb_type": "--", "chi": -178.371, "glyco_bond": "anti", "C5prime_xyz": [ -1.441, 8.511, 1.595 ], "P_xyz": [ 0.712, 9.669, 0.691 ], "form": "A", "ssZp": 4.590, "Dp": 4.655, "splay_angle": 20.483, "splay_distance": 3.261, "splay_ratio": 0.179, "d22": null, "d64": null, "eta": 163.578, "theta": -149.736, "eta_prime": -178.381, "theta_prime": -149.004, "eta_base": -132.207, "theta_base": -111.462, "v0": 1.201, "v1": -23.207, "v2": 35.168, "v3": -35.461, "v4": 21.597, "amplitude": 36.733, "phase_angle": 16.786, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.295, "filter_rmsd": 0.065, "frame": { "rmsd": 0.008, "origin": [ 187.699, 229.198, 192.628 ], "x_axis": [ -0.429, 0.817, 0.384 ], "y_axis": [ 0.843, 0.515, -0.154 ], "z_axis": [ -0.324, 0.258, -0.910 ], "quaternion": [ -0.209, 0.491, 0.845, 0.031 ] } }, { "index": 1325, "index_chain": 1325, "chain_name": "A", "nt_resnum": 1403, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1403", "linked_nts": [ "///A/1402", "///A/1404" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor", "alpha": -54.337, "beta": 154.571, "gamma": 52.229, "delta": 78.622, "epsilon": -121.973, "zeta": -103.814, "epsilon_zeta": -18.159, "bb_type": "--", "chi": -159.244, "glyco_bond": "anti", "C5prime_xyz": [ -1.526, 8.823, 0.450 ], "P_xyz": [ 1.040, 9.236, 0.199 ], "form": ".", "ssZp": 4.250, "Dp": 4.730, "splay_angle": 76.278, "splay_distance": 12.327, "splay_ratio": 0.620, "d22": null, "d64": null, "eta": 165.394, "theta": -123.764, "eta_prime": -178.305, "theta_prime": -156.924, "eta_base": -126.486, "theta_base": 161.332, "v0": 0.159, "v1": -23.603, "v2": 36.825, "v3": -37.695, "v4": 23.659, "amplitude": 38.798, "phase_angle": 18.350, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.553, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 185.437, 230.571, 190.723 ], "x_axis": [ 0.166, 0.975, 0.147 ], "y_axis": [ 0.860, -0.070, -0.505 ], "z_axis": [ -0.482, 0.210, -0.850 ], "quaternion": [ -0.248, 0.722, 0.635, -0.116 ] } }, { "index": 1326, "index_chain": 1326, "chain_name": "A", "nt_resnum": 1404, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1404", "linked_nts": [ "///A/1403", "///A/1405" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": 54.560, "beta": 163.935, "gamma": 166.160, "delta": 83.197, "epsilon": -106.897, "zeta": -87.386, "epsilon_zeta": -19.511, "bb_type": "--", "chi": 168.992, "glyco_bond": "anti", "C5prime_xyz": [ -1.932, 8.187, 2.173 ], "P_xyz": [ -0.566, 10.412, 2.010 ], "form": ".", "ssZp": 4.435, "Dp": 4.529, "splay_angle": 23.460, "splay_distance": 3.620, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 33.289, "theta": -159.105, "eta_prime": 40.006, "theta_prime": -149.062, "eta_base": 23.544, "theta_base": -85.030, "v0": -1.769, "v1": -19.692, "v2": 32.321, "v3": -34.308, "v4": 22.743, "amplitude": 34.731, "phase_angle": 21.473, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 181.179, 222.317, 182.619 ], "x_axis": [ 0.545, -0.838, -0.021 ], "y_axis": [ 0.823, 0.540, -0.176 ], "z_axis": [ 0.159, 0.079, 0.984 ], "quaternion": [ 0.876, -0.073, 0.051, -0.474 ] } }, { "index": 1327, "index_chain": 1327, "chain_name": "A", "nt_resnum": 1405, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1405", "linked_nts": [ "///A/1404", "///A/1406" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate", "alpha": -63.272, "beta": 149.799, "gamma": 54.627, "delta": 85.108, "epsilon": -152.625, "zeta": -61.611, "epsilon_zeta": -91.014, "bb_type": "BI", "chi": -161.153, "glyco_bond": "anti", "C5prime_xyz": [ -1.382, 8.645, 0.625 ], "P_xyz": [ 1.231, 8.708, 0.440 ], "form": ".", "ssZp": 4.373, "Dp": 4.534, "splay_angle": 26.082, "splay_distance": 4.032, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 147.287, "theta": -129.298, "eta_prime": 173.973, "theta_prime": -133.089, "eta_base": -108.607, "theta_base": -91.000, "v0": 2.101, "v1": -22.760, "v2": 33.531, "v3": -33.275, "v4": 19.687, "amplitude": 34.752, "phase_angle": 15.232, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.172, "filter_rmsd": 0.037, "frame": { "rmsd": 0.008, "origin": [ 183.053, 221.226, 185.517 ], "x_axis": [ 0.985, -0.043, -0.168 ], "y_axis": [ 0.048, 0.999, 0.023 ], "z_axis": [ 0.167, -0.031, 0.986 ], "quaternion": [ 0.996, 0.013, 0.084, -0.023 ] } }, { "index": 1328, "index_chain": 1328, "chain_name": "A", "nt_resnum": 1406, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1406", "linked_nts": [ "///A/1405", "///A/1407" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate", "alpha": -78.506, "beta": 173.576, "gamma": 61.648, "delta": 82.504, "epsilon": -144.451, "zeta": -68.848, "epsilon_zeta": -75.603, "bb_type": "BI", "chi": -160.367, "glyco_bond": "anti", "C5prime_xyz": [ -1.142, 8.596, 0.541 ], "P_xyz": [ 1.464, 8.777, 0.380 ], "form": ".", "ssZp": 4.454, "Dp": 4.704, "splay_angle": 60.905, "splay_distance": 9.241, "splay_ratio": 0.508, "d22": null, "d64": null, "eta": 162.963, "theta": -86.079, "eta_prime": -176.553, "theta_prime": -76.643, "eta_base": -111.231, "theta_base": -56.985, "v0": 5.334, "v1": -26.742, "v2": 36.829, "v3": -34.727, "v4": 18.576, "amplitude": 37.469, "phase_angle": 10.606, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.738, "filter_rmsd": 0.038, "frame": { "rmsd": 0.006, "origin": [ 185.856, 221.226, 188.415 ], "x_axis": [ 0.691, 0.716, -0.101 ], "y_axis": [ -0.687, 0.694, 0.216 ], "z_axis": [ 0.225, -0.081, 0.971 ], "quaternion": [ 0.916, 0.081, 0.089, 0.383 ] } }, { "index": 1329, "index_chain": 1329, "chain_name": "A", "nt_resnum": 1407, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1407", "linked_nts": [ "///A/1406", "///A/1408" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": 143.697, "beta": -103.944, "gamma": 177.323, "delta": 81.793, "epsilon": -126.321, "zeta": -87.661, "epsilon_zeta": -38.660, "bb_type": "--", "chi": 179.207, "glyco_bond": "anti", "C5prime_xyz": [ -1.643, 8.431, 1.702 ], "P_xyz": [ -0.002, 9.384, -0.092 ], "form": "A", "ssZp": 4.665, "Dp": 4.690, "splay_angle": 22.643, "splay_distance": 3.627, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": -179.276, "theta": -154.324, "eta_prime": -129.237, "theta_prime": -159.546, "eta_base": -67.603, "theta_base": -144.343, "v0": 1.776, "v1": -23.701, "v2": 35.387, "v3": -35.350, "v4": 21.205, "amplitude": 36.800, "phase_angle": 15.926, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.026, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 187.992, 229.056, 192.835 ], "x_axis": [ -0.389, 0.781, 0.488 ], "y_axis": [ -0.826, -0.530, 0.191 ], "z_axis": [ 0.408, -0.329, 0.852 ], "quaternion": [ 0.483, 0.269, -0.041, 0.832 ] } }, { "index": 1330, "index_chain": 1330, "chain_name": "A", "nt_resnum": 1408, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1408", "linked_nts": [ "///A/1407", "///A/1409" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor", "alpha": -66.536, "beta": 176.792, "gamma": 47.726, "delta": 84.773, "epsilon": -172.329, "zeta": -74.334, "epsilon_zeta": -97.995, "bb_type": "BI", "chi": -156.995, "glyco_bond": "anti", "C5prime_xyz": [ -1.432, 8.800, 0.380 ], "P_xyz": [ 1.060, 9.307, 1.000 ], "form": "A", "ssZp": 4.106, "Dp": 4.264, "splay_angle": 18.839, "splay_distance": 3.237, "splay_ratio": 0.170, "d22": null, "d64": null, "eta": 161.076, "theta": -130.315, "eta_prime": 173.880, "theta_prime": -138.954, "eta_base": -156.047, "theta_base": -113.788, "v0": -0.654, "v1": -19.867, "v2": 31.593, "v3": -32.870, "v4": 21.177, "amplitude": 33.560, "phase_angle": 19.710, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.609, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 190.708, 229.366, 195.219 ], "x_axis": [ -0.890, 0.412, 0.196 ], "y_axis": [ -0.423, -0.906, -0.015 ], "z_axis": [ 0.171, -0.096, 0.981 ], "quaternion": [ 0.215, 0.094, -0.029, 0.972 ] } }, { "index": 1331, "index_chain": 1331, "chain_name": "A", "nt_resnum": 1409, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1409", "linked_nts": [ "///A/1408", "///A/1410" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,internal-loop", "alpha": 163.371, "beta": -155.232, "gamma": 162.156, "delta": 82.631, "epsilon": -119.468, "zeta": -88.457, "epsilon_zeta": -31.012, "bb_type": "--", "chi": -167.719, "glyco_bond": "anti", "C5prime_xyz": [ -1.408, 8.752, 0.977 ], "P_xyz": [ 0.540, 9.953, -0.288 ], "form": ".", "ssZp": 4.342, "Dp": 4.577, "splay_angle": 34.668, "splay_distance": 5.404, "splay_ratio": 0.301, "d22": null, "d64": null, "eta": 165.440, "theta": -149.403, "eta_prime": -179.696, "theta_prime": -141.969, "eta_base": -137.739, "theta_base": -91.699, "v0": -1.361, "v1": -20.231, "v2": 32.836, "v3": -34.549, "v4": 22.640, "amplitude": 35.117, "phase_angle": 20.766, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.483, "filter_rmsd": 0.062, "frame": { "rmsd": 0.009, "origin": [ 190.954, 230.835, 198.094 ], "x_axis": [ -0.976, -0.117, 0.185 ], "y_axis": [ 0.128, -0.991, 0.050 ], "z_axis": [ 0.177, 0.072, 0.982 ], "quaternion": [ -0.062, 0.091, 0.031, 0.993 ] } }, { "index": 1332, "index_chain": 1332, "chain_name": "A", "nt_resnum": 1410, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1410", "linked_nts": [ "///A/1409", "///A/1411" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -44.839, "beta": 147.663, "gamma": 52.832, "delta": 83.623, "epsilon": -165.967, "zeta": -97.181, "epsilon_zeta": -68.785, "bb_type": "BI", "chi": -153.553, "glyco_bond": "anti", "C5prime_xyz": [ -1.120, 8.649, 0.135 ], "P_xyz": [ 1.426, 8.462, -0.457 ], "form": ".", "ssZp": 4.279, "Dp": 4.539, "splay_angle": 50.453, "splay_distance": 7.949, "splay_ratio": 0.428, "d22": null, "d64": null, "eta": 160.978, "theta": -174.599, "eta_prime": -169.827, "theta_prime": 179.883, "eta_base": -102.226, "theta_base": 173.078, "v0": 5.312, "v1": -26.160, "v2": 35.916, "v3": -33.844, "v4": 18.025, "amplitude": 36.522, "phase_angle": 10.455, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.751, "filter_rmsd": 0.017, "frame": { "rmsd": 0.017, "origin": [ 189.034, 229.131, 202.849 ], "x_axis": [ -0.443, -0.880, 0.172 ], "y_axis": [ 0.887, -0.458, -0.059 ], "z_axis": [ 0.131, 0.126, 0.983 ], "quaternion": [ 0.520, -0.089, -0.020, -0.849 ] } }, { "index": 1333, "index_chain": 1333, "chain_name": "A", "nt_resnum": 1411, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1411", "linked_nts": [ "///A/1410", "///A/1412" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate", "alpha": -57.590, "beta": -173.039, "gamma": 41.666, "delta": 80.172, "epsilon": -150.531, "zeta": -68.562, "epsilon_zeta": -81.969, "bb_type": "BI", "chi": -171.496, "glyco_bond": "anti", "C5prime_xyz": [ -1.753, 8.671, 1.156 ], "P_xyz": [ 0.417, 9.368, 2.431 ], "form": "A", "ssZp": 4.505, "Dp": 4.536, "splay_angle": 25.455, "splay_distance": 3.902, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": 178.650, "theta": -147.220, "eta_prime": 169.441, "theta_prime": -141.481, "eta_base": 161.935, "theta_base": -92.756, "v0": -1.920, "v1": -20.939, "v2": 34.486, "v3": -36.573, "v4": 24.280, "amplitude": 37.068, "phase_angle": 21.512, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.804, "filter_rmsd": 0.100, "frame": { "rmsd": 0.007, "origin": [ 190.661, 235.624, 207.137 ], "x_axis": [ -0.683, -0.657, -0.319 ], "y_axis": [ 0.730, -0.604, -0.320 ], "z_axis": [ 0.018, -0.452, 0.892 ], "quaternion": [ -0.389, -0.085, -0.216, 0.891 ] } }, { "index": 1334, "index_chain": 1334, "chain_name": "A", "nt_resnum": 1412, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1412", "linked_nts": [ "///A/1411", "///A/1413" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -68.953, "beta": 169.834, "gamma": 57.895, "delta": 82.752, "epsilon": -131.082, "zeta": -57.825, "epsilon_zeta": -73.258, "bb_type": "BI", "chi": -170.975, "glyco_bond": "anti", "C5prime_xyz": [ -1.260, 8.519, 1.170 ], "P_xyz": [ 1.337, 8.729, 1.443 ], "form": ".", "ssZp": 4.618, "Dp": 4.719, "splay_angle": 39.318, "splay_distance": 6.052, "splay_ratio": 0.337, "d22": null, "d64": null, "eta": 169.052, "theta": -114.583, "eta_prime": -175.126, "theta_prime": -108.714, "eta_base": -114.008, "theta_base": -64.068, "v0": 3.255, "v1": -24.901, "v2": 35.905, "v3": -34.990, "v4": 20.030, "amplitude": 36.951, "phase_angle": 13.664, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.948, "filter_rmsd": 0.040, "frame": { "rmsd": 0.012, "origin": [ 189.149, 233.221, 209.813 ], "x_axis": [ 0.054, -0.896, -0.441 ], "y_axis": [ 0.997, 0.076, -0.032 ], "z_axis": [ 0.062, -0.438, 0.897 ], "quaternion": [ 0.712, 0.142, 0.177, -0.665 ] } }, { "index": 1335, "index_chain": 1335, "chain_name": "A", "nt_resnum": 1413, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1413", "linked_nts": [ "///A/1412", "///A/1414" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -62.071, "beta": 163.191, "gamma": 65.760, "delta": 82.779, "epsilon": -163.001, "zeta": -60.414, "epsilon_zeta": -102.587, "bb_type": "BI", "chi": -165.823, "glyco_bond": "anti", "C5prime_xyz": [ -1.277, 8.753, 0.898 ], "P_xyz": [ 1.333, 9.019, 0.913 ], "form": "A", "ssZp": 4.348, "Dp": 4.423, "splay_angle": 20.352, "splay_distance": 3.591, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 166.137, "theta": -121.235, "eta_prime": -158.617, "theta_prime": -135.293, "eta_base": -85.573, "theta_base": -119.127, "v0": 0.270, "v1": -21.604, "v2": 33.483, "v3": -34.228, "v4": 21.466, "amplitude": 35.240, "phase_angle": 18.169, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.601, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 191.283, 227.690, 211.031 ], "x_axis": [ 0.914, -0.313, -0.257 ], "y_axis": [ 0.395, 0.831, 0.391 ], "z_axis": [ 0.091, -0.459, 0.884 ], "quaternion": [ 0.953, 0.223, 0.091, -0.186 ] } }, { "index": 1336, "index_chain": 1336, "chain_name": "A", "nt_resnum": 1414, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1414", "linked_nts": [ "///A/1413", "///A/1415" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 177.450, "beta": -178.716, "gamma": 155.532, "delta": 84.000, "epsilon": -147.857, "zeta": -74.733, "epsilon_zeta": -73.123, "bb_type": "BI", "chi": -172.638, "glyco_bond": "anti", "C5prime_xyz": [ -1.462, 8.595, 1.276 ], "P_xyz": [ 0.299, 10.174, 0.138 ], "form": "A", "ssZp": 4.512, "Dp": 4.546, "splay_angle": 21.779, "splay_distance": 3.445, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 159.779, "theta": -166.740, "eta_prime": 178.421, "theta_prime": -163.240, "eta_base": -141.891, "theta_base": -130.970, "v0": 1.100, "v1": -21.955, "v2": 33.186, "v3": -33.500, "v4": 20.511, "amplitude": 34.677, "phase_angle": 16.862, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.141, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 191.599, 224.411, 212.462 ], "x_axis": [ 0.988, 0.143, -0.060 ], "y_axis": [ -0.081, 0.806, 0.586 ], "z_axis": [ 0.132, -0.574, 0.808 ], "quaternion": [ 0.949, 0.305, 0.050, 0.059 ] } }, { "index": 1337, "index_chain": 1337, "chain_name": "A", "nt_resnum": 1415, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1415", "linked_nts": [ "///A/1414", "///A/1416" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -61.858, "beta": 170.746, "gamma": 53.815, "delta": 85.218, "epsilon": -141.279, "zeta": -66.591, "epsilon_zeta": -74.687, "bb_type": "BI", "chi": -160.299, "glyco_bond": "anti", "C5prime_xyz": [ -1.408, 8.784, 0.559 ], "P_xyz": [ 1.147, 9.135, 0.982 ], "form": ".", "ssZp": 4.231, "Dp": 4.496, "splay_angle": 30.855, "splay_distance": 4.855, "splay_ratio": 0.267, "d22": null, "d64": null, "eta": 172.507, "theta": -128.296, "eta_prime": -172.853, "theta_prime": -124.421, "eta_base": -130.665, "theta_base": -72.279, "v0": -0.583, "v1": -20.147, "v2": 31.957, "v3": -33.193, "v4": 21.319, "amplitude": 33.914, "phase_angle": 19.562, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.933, "filter_rmsd": 0.063, "frame": { "rmsd": 0.009, "origin": [ 192.786, 221.627, 214.107 ], "x_axis": [ 0.752, 0.589, 0.297 ], "y_axis": [ -0.639, 0.540, 0.548 ], "z_axis": [ 0.162, -0.602, 0.782 ], "quaternion": [ 0.877, 0.328, -0.038, 0.350 ] } }, { "index": 1338, "index_chain": 1338, "chain_name": "A", "nt_resnum": 1416, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1416", "linked_nts": [ "///A/1415", "///A/1417" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -64.270, "beta": 164.289, "gamma": 58.377, "delta": 85.457, "epsilon": -111.419, "zeta": -89.689, "epsilon_zeta": -21.730, "bb_type": "--", "chi": -151.112, "glyco_bond": "anti", "C5prime_xyz": [ -1.101, 8.709, 0.031 ], "P_xyz": [ 1.500, 8.734, -0.305 ], "form": ".", "ssZp": 3.782, "Dp": 4.697, "splay_angle": 51.016, "splay_distance": 8.542, "splay_ratio": 0.431, "d22": null, "d64": null, "eta": 174.746, "theta": -129.259, "eta_prime": -163.574, "theta_prime": -134.657, "eta_base": -97.801, "theta_base": -161.004, "v0": 3.892, "v1": -24.115, "v2": 34.066, "v3": -32.754, "v4": 18.263, "amplitude": 34.877, "phase_angle": 12.378, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.867, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 194.702, 222.101, 218.543 ], "x_axis": [ -0.102, 0.772, 0.628 ], "y_axis": [ -0.955, -0.252, 0.154 ], "z_axis": [ 0.277, -0.584, 0.763 ], "quaternion": [ 0.593, 0.311, -0.148, 0.728 ] } }, { "index": 1339, "index_chain": 1339, "chain_name": "A", "nt_resnum": 1417, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1417", "linked_nts": [ "///A/1416", "///A/1418" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -163.852, "beta": 132.320, "gamma": 167.335, "delta": 147.254, "epsilon": -167.747, "zeta": -113.746, "epsilon_zeta": -54.001, "bb_type": "BI", "chi": -114.872, "glyco_bond": "anti", "C5prime_xyz": [ -2.226, 8.391, -1.453 ], "P_xyz": [ -1.726, 9.221, -3.893 ], "form": ".", "ssZp": 2.063, "Dp": 2.081, "splay_angle": 29.312, "splay_distance": 4.603, "splay_ratio": 0.254, "d22": null, "d64": null, "eta": -159.928, "theta": 148.666, "eta_prime": -165.829, "theta_prime": 135.070, "eta_base": 165.728, "theta_base": 74.496, "v0": -22.827, "v1": 37.072, "v2": -36.345, "v3": 24.119, "v4": -1.042, "amplitude": 38.057, "phase_angle": 162.748, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.012, "origin": [ 197.808, 215.013, 222.161 ], "x_axis": [ 0.265, 0.959, 0.097 ], "y_axis": [ -0.917, 0.219, 0.333 ], "z_axis": [ 0.298, -0.177, 0.938 ], "quaternion": [ 0.778, 0.164, 0.065, 0.603 ] } }, { "index": 1340, "index_chain": 1340, "chain_name": "A", "nt_resnum": 1418, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1418", "linked_nts": [ "///A/1417", "///A/1419" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -136.549, "beta": 159.448, "gamma": 37.508, "delta": 85.563, "epsilon": -96.935, "zeta": -110.490, "epsilon_zeta": 13.554, "bb_type": "--", "chi": -174.505, "glyco_bond": "anti", "C5prime_xyz": [ -1.395, 8.469, 1.399 ], "P_xyz": [ 1.060, 8.453, 2.326 ], "form": ".", "ssZp": 4.389, "Dp": 4.602, "splay_angle": 67.886, "splay_distance": 9.957, "splay_ratio": 0.560, "d22": null, "d64": null, "eta": 100.031, "theta": -128.502, "eta_prime": 94.412, "theta_prime": -115.310, "eta_base": 46.307, "theta_base": -88.016, "v0": 2.290, "v1": -22.489, "v2": 32.940, "v3": -32.518, "v4": 19.108, "amplitude": 34.076, "phase_angle": 14.833, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.007, "origin": [ 195.801, 212.278, 219.050 ], "x_axis": [ -0.780, 0.524, -0.343 ], "y_axis": [ -0.592, -0.441, 0.674 ], "z_axis": [ 0.202, 0.729, 0.654 ], "quaternion": [ 0.329, -0.042, 0.414, 0.848 ] } }, { "index": 1341, "index_chain": 1341, "chain_name": "A", "nt_resnum": 1419, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1419", "linked_nts": [ "///A/1418", "///A/1420" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,phosphate", "alpha": -45.164, "beta": 146.849, "gamma": 69.745, "delta": 83.915, "epsilon": -120.922, "zeta": -80.306, "epsilon_zeta": -40.616, "bb_type": "--", "chi": 168.658, "glyco_bond": "anti", "C5prime_xyz": [ -1.360, 7.959, 2.267 ], "P_xyz": [ 1.255, 8.036, 2.136 ], "form": "A", "ssZp": 4.774, "Dp": 4.788, "splay_angle": 28.033, "splay_distance": 4.333, "splay_ratio": 0.248, "d22": null, "d64": null, "eta": -169.723, "theta": -126.354, "eta_prime": -153.152, "theta_prime": -128.907, "eta_base": -119.509, "theta_base": -106.840, "v0": 7.428, "v1": -28.243, "v2": 37.221, "v3": -33.924, "v4": 16.750, "amplitude": 37.539, "phase_angle": 7.461, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.570, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 194.802, 218.653, 226.632 ], "x_axis": [ -0.988, -0.154, 0.002 ], "y_axis": [ 0.154, -0.985, -0.074 ], "z_axis": [ 0.013, -0.073, 0.997 ], "quaternion": [ -0.077, 0.004, -0.037, 0.996 ] } }, { "index": 1342, "index_chain": 1342, "chain_name": "A", "nt_resnum": 1420, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1420", "linked_nts": [ "///A/1419", "///A/1421" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop", "alpha": -77.518, "beta": 174.391, "gamma": 63.656, "delta": 83.312, "epsilon": -151.430, "zeta": -62.045, "epsilon_zeta": -89.385, "bb_type": "BI", "chi": 176.962, "glyco_bond": "anti", "C5prime_xyz": [ -1.808, 8.433, 1.778 ], "P_xyz": [ 0.632, 8.804, 2.641 ], "form": ".", "ssZp": 4.373, "Dp": 4.487, "splay_angle": 26.263, "splay_distance": 3.941, "splay_ratio": 0.262, "d22": null, "d64": null, "eta": 160.999, "theta": -135.831, "eta_prime": 178.084, "theta_prime": -136.569, "eta_base": -136.373, "theta_base": -55.316, "v0": -1.221, "v1": -20.488, "v2": 33.057, "v3": -34.677, "v4": 22.638, "amplitude": 35.293, "phase_angle": 20.504, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.480, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 193.199, 220.086, 230.395 ], "x_axis": [ -0.627, -0.680, -0.379 ], "y_axis": [ 0.771, -0.611, -0.180 ], "z_axis": [ -0.109, -0.406, 0.907 ], "quaternion": [ -0.409, -0.138, -0.165, 0.887 ] } }, { "index": 1343, "index_chain": 1343, "chain_name": "A", "nt_resnum": 1421, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1421", "linked_nts": [ "///A/1420", "///A/1422" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -76.434, "beta": -159.525, "gamma": 49.596, "delta": 82.898, "epsilon": -157.501, "zeta": -53.737, "epsilon_zeta": -103.763, "bb_type": "BI", "chi": 25.978, "glyco_bond": "syn", "C5prime_xyz": [ -5.724, 3.837, 0.093 ], "P_xyz": [ -6.306, 1.461, -0.826 ], "form": ".", "ssZp": -3.902, "Dp": 4.181, "splay_angle": 25.556, "splay_distance": 4.000, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 172.297, "theta": -136.544, "eta_prime": -176.808, "theta_prime": -131.410, "eta_base": -87.229, "theta_base": -153.753, "v0": -9.197, "v1": -12.799, "v2": 28.383, "v3": -34.495, "v4": 27.549, "amplitude": 34.149, "phase_angle": 33.784, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.628, "filter_rmsd": 0.041, "frame": { "rmsd": 0.013, "origin": [ 194.038, 216.828, 232.447 ], "x_axis": [ -0.984, 0.010, -0.179 ], "y_axis": [ -0.073, 0.889, 0.451 ], "z_axis": [ 0.164, 0.457, -0.874 ], "quaternion": [ 0.088, -0.016, 0.968, 0.235 ] } }, { "index": 1344, "index_chain": 1344, "chain_name": "A", "nt_resnum": 1422, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1422", "linked_nts": [ "///A/1421", "///A/1423" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop", "alpha": -85.138, "beta": 170.301, "gamma": 63.032, "delta": 80.492, "epsilon": -120.418, "zeta": -145.428, "epsilon_zeta": 25.010, "bb_type": "--", "chi": -148.249, "glyco_bond": "anti", "C5prime_xyz": [ -1.340, 8.779, -0.191 ], "P_xyz": [ 1.187, 9.109, -0.770 ], "form": ".", "ssZp": 3.759, "Dp": 4.745, "splay_angle": 67.546, "splay_distance": 10.252, "splay_ratio": 0.556, "d22": null, "d64": null, "eta": 161.932, "theta": 151.303, "eta_prime": -175.901, "theta_prime": 162.284, "eta_base": 174.778, "theta_base": 140.058, "v0": 2.696, "v1": -25.162, "v2": 36.872, "v3": -36.304, "v4": 21.218, "amplitude": 38.111, "phase_angle": 14.649, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.508, "filter_rmsd": 0.062, "frame": { "rmsd": 0.006, "origin": [ 190.954, 216.410, 234.959 ], "x_axis": [ 0.691, -0.677, -0.255 ], "y_axis": [ 0.666, 0.457, 0.589 ], "z_axis": [ -0.282, -0.577, 0.767 ], "quaternion": [ 0.854, 0.342, -0.008, -0.393 ] } }, { "index": 1345, "index_chain": 1345, "chain_name": "A", "nt_resnum": 1423, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1423", "linked_nts": [ "///A/1422", "///A/1424" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-pair-contact,junction-loop,A-minor,cap-acceptor,splayed-apart", "alpha": -90.429, "beta": 165.669, "gamma": 39.643, "delta": 83.272, "epsilon": -165.705, "zeta": -99.286, "epsilon_zeta": -66.419, "bb_type": "BI", "chi": -117.280, "glyco_bond": "anti", "C5prime_xyz": [ -1.666, 8.247, -1.881 ], "P_xyz": [ 0.809, 8.488, -2.704 ], "form": ".", "ssZp": 2.619, "Dp": 4.462, "splay_angle": 92.355, "splay_distance": 14.675, "splay_ratio": 0.722, "d22": null, "d64": null, "eta": 154.285, "theta": -143.255, "eta_prime": 140.353, "theta_prime": -158.401, "eta_base": 119.932, "theta_base": 165.449, "v0": 2.105, "v1": -23.259, "v2": 34.269, "v3": -34.054, "v4": 20.152, "amplitude": 35.527, "phase_angle": 15.294, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.184, "filter_rmsd": 0.040, "frame": { "rmsd": 0.008, "origin": [ 185.633, 221.424, 242.146 ], "x_axis": [ 0.085, -0.529, -0.844 ], "y_axis": [ 0.836, -0.423, 0.349 ], "z_axis": [ -0.542, -0.736, 0.407 ], "quaternion": [ 0.517, 0.525, 0.146, -0.661 ] } }, { "index": 1346, "index_chain": 1346, "chain_name": "A", "nt_resnum": 1424, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1424", "linked_nts": [ "///A/1423", "///A/1425" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": 123.914, "beta": 110.384, "gamma": -138.080, "delta": 149.685, "epsilon": -89.299, "zeta": 168.220, "epsilon_zeta": 102.480, "bb_type": "BII", "chi": -74.894, "glyco_bond": "anti", "C5prime_xyz": [ -3.301, 7.176, -2.761 ], "P_xyz": [ -5.042, 8.256, -4.394 ], "form": "B", "ssZp": 0.736, "Dp": 0.712, "splay_angle": 21.559, "splay_distance": 3.770, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": 157.986, "theta": 143.943, "eta_prime": 145.795, "theta_prime": 138.255, "eta_base": 114.985, "theta_base": -179.254, "v0": -25.565, "v1": 40.064, "v2": -38.368, "v3": 24.594, "v4": 0.368, "amplitude": 40.658, "phase_angle": 160.679, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.045, "frame": { "rmsd": 0.012, "origin": [ 184.413, 215.445, 255.492 ], "x_axis": [ -0.907, 0.391, -0.155 ], "y_axis": [ 0.118, -0.116, -0.986 ], "z_axis": [ -0.403, -0.913, 0.059 ], "quaternion": [ 0.094, -0.193, -0.658, 0.722 ] } }, { "index": 1347, "index_chain": 1347, "chain_name": "A", "nt_resnum": 1425, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1425", "linked_nts": [ "///A/1424", "///A/1426" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 48.778, "beta": -130.562, "gamma": -167.669, "delta": 82.101, "epsilon": -155.179, "zeta": -72.828, "epsilon_zeta": -82.351, "bb_type": "BI", "chi": -155.690, "glyco_bond": "anti", "C5prime_xyz": [ -1.499, 8.881, 0.246 ], "P_xyz": [ -0.419, 9.981, -1.868 ], "form": "A", "ssZp": 4.163, "Dp": 4.435, "splay_angle": 25.361, "splay_distance": 4.127, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 146.735, "theta": -176.835, "eta_prime": 143.538, "theta_prime": -176.306, "eta_base": -162.625, "theta_base": -154.814, "v0": -2.451, "v1": -19.549, "v2": 32.806, "v3": -35.106, "v4": 23.680, "amplitude": 35.493, "phase_angle": 22.435, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "4n", "suiteness": 0.014, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 183.452, 211.830, 255.957 ], "x_axis": [ -0.717, 0.290, -0.634 ], "y_axis": [ 0.605, -0.193, -0.772 ], "z_axis": [ -0.346, -0.938, -0.037 ], "quaternion": [ -0.115, -0.358, -0.625, 0.684 ] } }, { "index": 1348, "index_chain": 1348, "chain_name": "A", "nt_resnum": 1426, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1426", "linked_nts": [ "///A/1425", "///A/1427" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.885, "beta": -179.897, "gamma": 45.288, "delta": 79.394, "epsilon": -172.501, "zeta": -84.757, "epsilon_zeta": -87.744, "bb_type": "BI", "chi": -160.984, "glyco_bond": "anti", "C5prime_xyz": [ -1.450, 8.740, 0.562 ], "P_xyz": [ 1.016, 9.391, 1.123 ], "form": "A", "ssZp": 4.376, "Dp": 4.440, "splay_angle": 21.481, "splay_distance": 3.422, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 162.985, "theta": -142.659, "eta_prime": 174.405, "theta_prime": -145.935, "eta_base": -151.934, "theta_base": -115.195, "v0": 0.309, "v1": -23.199, "v2": 36.026, "v3": -36.864, "v4": 23.053, "amplitude": 37.918, "phase_angle": 18.179, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.852, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 181.233, 208.441, 256.745 ], "x_axis": [ -0.259, 0.404, -0.877 ], "y_axis": [ 0.892, -0.249, -0.378 ], "z_axis": [ -0.371, -0.880, -0.296 ], "quaternion": [ 0.222, 0.567, 0.571, -0.550 ] } }, { "index": 1349, "index_chain": 1349, "chain_name": "A", "nt_resnum": 1427, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1427", "linked_nts": [ "///A/1426", "///A/1428" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 170.639, "beta": -142.085, "gamma": 150.148, "delta": 81.316, "epsilon": -128.085, "zeta": -85.701, "epsilon_zeta": -42.384, "bb_type": "--", "chi": 175.912, "glyco_bond": "anti", "C5prime_xyz": [ -1.578, 8.355, 1.882 ], "P_xyz": [ 0.772, 9.237, 1.177 ], "form": "A", "ssZp": 4.643, "Dp": 4.677, "splay_angle": 23.291, "splay_distance": 3.619, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 160.655, "theta": -147.720, "eta_prime": 176.822, "theta_prime": -149.707, "eta_base": -135.630, "theta_base": -119.855, "v0": 1.322, "v1": -23.247, "v2": 35.155, "v3": -35.415, "v4": 21.482, "amplitude": 36.691, "phase_angle": 16.635, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.037, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 178.644, 206.630, 255.430 ], "x_axis": [ 0.340, 0.331, -0.880 ], "y_axis": [ 0.869, -0.468, 0.160 ], "z_axis": [ -0.359, -0.819, -0.447 ], "quaternion": [ 0.326, 0.751, 0.400, -0.413 ] } }, { "index": 1350, "index_chain": 1350, "chain_name": "A", "nt_resnum": 1428, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1428", "linked_nts": [ "///A/1427", "///A/1429" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -60.284, "beta": 159.692, "gamma": 58.149, "delta": 81.457, "epsilon": -140.105, "zeta": -87.172, "epsilon_zeta": -52.933, "bb_type": "BI", "chi": -172.197, "glyco_bond": "anti", "C5prime_xyz": [ -1.395, 8.652, 1.254 ], "P_xyz": [ 1.179, 8.915, 1.579 ], "form": "A", "ssZp": 4.508, "Dp": 4.590, "splay_angle": 24.178, "splay_distance": 3.762, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 167.342, "theta": -147.127, "eta_prime": -177.815, "theta_prime": -145.999, "eta_base": -131.157, "theta_base": -119.572, "v0": 0.418, "v1": -22.458, "v2": 34.721, "v3": -35.464, "v4": 22.105, "amplitude": 36.505, "phase_angle": 17.987, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.650, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 176.497, 205.012, 253.007 ], "x_axis": [ 0.829, 0.013, -0.558 ], "y_axis": [ 0.466, -0.568, 0.678 ], "z_axis": [ -0.309, -0.823, -0.478 ], "quaternion": [ 0.443, 0.848, 0.141, -0.256 ] } }, { "index": 1351, "index_chain": 1351, "chain_name": "A", "nt_resnum": 1429, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1429", "linked_nts": [ "///A/1428", "///A/1430" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -46.792, "beta": 156.484, "gamma": 48.490, "delta": 82.329, "epsilon": -101.424, "zeta": -127.510, "epsilon_zeta": 26.086, "bb_type": "--", "chi": -169.110, "glyco_bond": "anti", "C5prime_xyz": [ -1.479, 8.618, 1.070 ], "P_xyz": [ 1.110, 8.858, 1.386 ], "form": ".", "ssZp": 4.347, "Dp": 4.669, "splay_angle": 36.834, "splay_distance": 5.790, "splay_ratio": 0.317, "d22": 6.371, "d64": 6.396, "eta": -177.948, "theta": -160.907, "eta_prime": -167.910, "theta_prime": -150.121, "eta_base": -132.152, "theta_base": -137.805, "v0": 1.915, "v1": -23.534, "v2": 35.002, "v3": -34.844, "v4": 20.782, "amplitude": 36.349, "phase_angle": 15.649, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.571, "filter_rmsd": 0.107, "frame": { "rmsd": 0.007, "origin": [ 175.084, 202.838, 250.282 ], "x_axis": [ 0.948, -0.298, -0.115 ], "y_axis": [ -0.033, -0.449, 0.893 ], "z_axis": [ -0.317, -0.842, -0.436 ], "quaternion": [ 0.515, 0.842, -0.098, -0.128 ] } }, { "index": 1352, "index_chain": 1352, "chain_name": "A", "nt_resnum": 1430, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1430", "linked_nts": [ "///A/1429", "///A/1431" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,cap-acceptor", "alpha": -60.958, "beta": 137.645, "gamma": 68.739, "delta": 80.790, "epsilon": -120.115, "zeta": -95.796, "epsilon_zeta": -24.319, "bb_type": "--", "chi": -148.784, "glyco_bond": "anti", "C5prime_xyz": [ -1.479, 8.771, -0.171 ], "P_xyz": [ 0.794, 8.781, -1.469 ], "form": ".", "ssZp": 3.778, "Dp": 4.720, "splay_angle": 79.978, "splay_distance": 11.907, "splay_ratio": 0.643, "d22": null, "d64": null, "eta": -178.378, "theta": -105.114, "eta_prime": -175.044, "theta_prime": -151.990, "eta_base": -165.482, "theta_base": 145.573, "v0": 1.063, "v1": -23.331, "v2": 35.463, "v3": -35.808, "v4": 21.934, "amplitude": 37.081, "phase_angle": 16.990, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.250, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 172.046, 199.041, 247.139 ], "x_axis": [ 0.895, -0.430, 0.121 ], "y_axis": [ -0.299, -0.376, 0.877 ], "z_axis": [ -0.332, -0.821, -0.465 ], "quaternion": [ 0.513, 0.827, -0.220, -0.064 ] } }, { "index": 1353, "index_chain": 1353, "chain_name": "A", "nt_resnum": 1431, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1431", "linked_nts": [ "///A/1430", "///A/1432" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop", "alpha": 139.094, "beta": -151.658, "gamma": 52.543, "delta": 86.869, "epsilon": 165.686, "zeta": -77.926, "epsilon_zeta": -116.388, "bb_type": "BI", "chi": -148.573, "glyco_bond": "anti", "C5prime_xyz": [ -0.954, 8.665, -0.027 ], "P_xyz": [ 1.486, 8.820, 0.925 ], "form": ".", "ssZp": 3.836, "Dp": 4.076, "splay_angle": 19.533, "splay_distance": 3.076, "splay_ratio": 0.171, "d22": null, "d64": null, "eta": 12.874, "theta": -148.074, "eta_prime": 41.192, "theta_prime": -147.147, "eta_base": 23.881, "theta_base": -135.579, "v0": 5.556, "v1": -24.362, "v2": 32.911, "v3": -30.600, "v4": 15.889, "amplitude": 33.348, "phase_angle": 9.291, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.036, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 160.487, 196.303, 246.329 ], "x_axis": [ -0.475, 0.315, 0.821 ], "y_axis": [ 0.692, -0.443, 0.570 ], "z_axis": [ 0.544, 0.839, -0.008 ], "quaternion": [ -0.136, 0.494, 0.510, 0.691 ] } }, { "index": 1354, "index_chain": 1354, "chain_name": "A", "nt_resnum": 1432, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1432", "linked_nts": [ "///A/1431", "///A/1433" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-donor,phosphate,splayed-apart", "alpha": -158.872, "beta": -123.936, "gamma": 106.990, "delta": 81.511, "epsilon": -74.663, "zeta": -143.897, "epsilon_zeta": 69.234, "bb_type": "--", "chi": -148.191, "glyco_bond": "anti", "C5prime_xyz": [ -1.692, 8.808, -0.235 ], "P_xyz": [ 0.881, 8.696, -0.712 ], "form": ".", "ssZp": 2.964, "Dp": 4.379, "splay_angle": 92.312, "splay_distance": 12.070, "splay_ratio": 0.741, "d22": null, "d64": null, "eta": -175.498, "theta": -145.659, "eta_prime": -172.215, "theta_prime": -126.092, "eta_base": -158.862, "theta_base": -74.300, "v0": -3.052, "v1": -19.678, "v2": 33.517, "v3": -36.179, "v4": 24.779, "amplitude": 36.481, "phase_angle": 23.256, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 161.948, 198.750, 245.172 ], "x_axis": [ -0.170, 0.081, 0.982 ], "y_axis": [ 0.915, -0.357, 0.188 ], "z_axis": [ 0.366, 0.931, -0.013 ], "quaternion": [ -0.339, 0.548, 0.454, 0.615 ] } }, { "index": 1355, "index_chain": 1355, "chain_name": "A", "nt_resnum": 1433, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1433", "linked_nts": [ "///A/1432", "///A/1434" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,~C3'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -46.731, "beta": 157.854, "gamma": 55.411, "delta": 88.060, "epsilon": -97.421, "zeta": -98.291, "epsilon_zeta": 0.870, "bb_type": "--", "chi": 94.001, "glyco_bond": "--", "C5prime_xyz": [ -4.032, 5.036, 3.080 ], "P_xyz": [ -2.702, 3.266, 4.481 ], "form": ".", "ssZp": 1.095, "Dp": 4.564, "splay_angle": 26.108, "splay_distance": 4.348, "splay_ratio": 0.247, "d22": null, "d64": null, "eta": -145.872, "theta": -106.673, "eta_prime": -151.083, "theta_prime": -118.141, "eta_base": -142.635, "theta_base": 111.407, "v0": 5.529, "v1": -24.485, "v2": 33.036, "v3": -30.805, "v4": 15.997, "amplitude": 33.484, "phase_angle": 9.376, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.113, "frame": { "rmsd": 0.014, "origin": [ 172.970, 200.997, 249.551 ], "x_axis": [ -0.805, 0.143, 0.576 ], "y_axis": [ -0.478, 0.420, -0.772 ], "z_axis": [ -0.352, -0.896, -0.270 ], "quaternion": [ -0.294, -0.106, 0.790, -0.528 ] } }, { "index": 1356, "index_chain": 1356, "chain_name": "A", "nt_resnum": 1434, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1434", "linked_nts": [ "///A/1433", "///A/1435" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": 61.748, "beta": -105.860, "gamma": -102.953, "delta": 141.565, "epsilon": 174.182, "zeta": 16.093, "epsilon_zeta": 158.090, "bb_type": "--", "chi": -72.527, "glyco_bond": "--", "C5prime_xyz": [ -3.462, 7.014, -2.886 ], "P_xyz": [ -5.257, 6.620, -4.765 ], "form": ".", "ssZp": 2.034, "Dp": 2.217, "splay_angle": 141.779, "splay_distance": 19.103, "splay_ratio": 0.945, "d22": null, "d64": null, "eta": -128.943, "theta": -119.084, "eta_prime": -134.145, "theta_prime": -148.402, "eta_base": 112.006, "theta_base": -165.891, "v0": -26.959, "v1": 39.417, "v2": -36.042, "v3": 21.361, "v4": 3.190, "amplitude": 39.298, "phase_angle": 156.512, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 171.380, 205.043, 249.462 ], "x_axis": [ -0.063, -0.358, 0.932 ], "y_axis": [ 0.942, -0.330, -0.063 ], "z_axis": [ 0.330, 0.873, 0.358 ], "quaternion": [ -0.491, 0.477, 0.306, 0.662 ] } }, { "index": 1357, "index_chain": 1357, "chain_name": "A", "nt_resnum": 1435, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1435", "linked_nts": [ "///A/1434", "///A/1436" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 151.709, "beta": 84.240, "gamma": -68.227, "delta": 150.739, "epsilon": -101.986, "zeta": -62.379, "epsilon_zeta": -39.607, "bb_type": "--", "chi": -133.182, "glyco_bond": "anti", "C5prime_xyz": [ -1.944, 8.654, -0.493 ], "P_xyz": [ -2.748, 10.366, 1.306 ], "form": ".", "ssZp": 0.857, "Dp": 0.900, "splay_angle": 115.933, "splay_distance": 16.559, "splay_ratio": 0.848, "d22": 8.549, "d64": 10.498, "eta": -104.628, "theta": -56.158, "eta_prime": -42.641, "theta_prime": -58.196, "eta_base": -9.026, "theta_base": -35.378, "v0": -21.682, "v1": 37.329, "v2": -37.797, "v3": 26.232, "v4": -3.059, "amplitude": 39.011, "phase_angle": 165.668, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 189.459, 210.556, 246.691 ], "x_axis": [ 0.586, -0.424, -0.690 ], "y_axis": [ -0.730, -0.646, -0.222 ], "z_axis": [ -0.352, 0.634, -0.689 ], "quaternion": [ -0.250, 0.855, -0.338, -0.305 ] } }, { "index": 1358, "index_chain": 1358, "chain_name": "A", "nt_resnum": 1436, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1436", "linked_nts": [ "///A/1435", "///A/1437" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -84.407, "beta": -146.912, "gamma": 54.892, "delta": 146.453, "epsilon": -124.934, "zeta": -69.803, "epsilon_zeta": -55.131, "bb_type": "--", "chi": -152.525, "glyco_bond": "anti", "C5prime_xyz": [ -2.009, 8.702, 0.494 ], "P_xyz": [ -0.667, 9.238, 2.674 ], "form": ".", "ssZp": 1.256, "Dp": 1.494, "splay_angle": 80.619, "splay_distance": 12.125, "splay_ratio": 0.647, "d22": 6.860, "d64": 7.743, "eta": 165.326, "theta": -61.587, "eta_prime": -144.214, "theta_prime": -80.268, "eta_base": -126.987, "theta_base": -48.047, "v0": -23.266, "v1": 37.000, "v2": -35.733, "v3": 23.247, "v4": -0.207, "amplitude": 37.682, "phase_angle": 161.493, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.735, "filter_rmsd": 0.100, "frame": { "rmsd": 0.013, "origin": [ 174.287, 206.974, 241.106 ], "x_axis": [ 0.649, -0.636, -0.417 ], "y_axis": [ 0.725, 0.351, 0.593 ], "z_axis": [ -0.231, -0.687, 0.689 ], "quaternion": [ 0.820, 0.390, 0.057, -0.415 ] } }, { "index": 1359, "index_chain": 1359, "chain_name": "A", "nt_resnum": 1437, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1437", "linked_nts": [ "///A/1436", "///A/1438" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate", "alpha": -106.192, "beta": -163.157, "gamma": 55.450, "delta": 85.179, "epsilon": -136.112, "zeta": -73.045, "epsilon_zeta": -63.067, "bb_type": "BI", "chi": -168.142, "glyco_bond": "anti", "C5prime_xyz": [ -1.097, 8.635, 1.042 ], "P_xyz": [ 1.287, 8.745, 2.126 ], "form": "A", "ssZp": 4.463, "Dp": 4.593, "splay_angle": 21.106, "splay_distance": 3.369, "splay_ratio": 0.183, "d22": 4.367, "d64": 3.733, "eta": 140.720, "theta": -133.585, "eta_prime": 179.360, "theta_prime": -131.279, "eta_base": -135.557, "theta_base": -102.572, "v0": 1.979, "v1": -22.202, "v2": 32.809, "v3": -32.564, "v4": 19.343, "amplitude": 34.023, "phase_angle": 15.354, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.156, "filter_rmsd": 0.065, "frame": { "rmsd": 0.008, "origin": [ 176.624, 204.641, 252.773 ], "x_axis": [ 0.887, 0.125, -0.445 ], "y_axis": [ -0.382, 0.740, -0.554 ], "z_axis": [ 0.260, 0.661, 0.704 ], "quaternion": [ 0.912, -0.333, 0.193, 0.139 ] } }, { "index": 1360, "index_chain": 1360, "chain_name": "A", "nt_resnum": 1438, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1438", "linked_nts": [ "///A/1437", "///A/1439" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -77.354, "beta": -178.746, "gamma": 44.480, "delta": 73.762, "epsilon": 91.603, "zeta": 71.881, "epsilon_zeta": 19.722, "bb_type": "--", "chi": -155.813, "glyco_bond": "anti", "C5prime_xyz": [ -1.168, 8.729, 0.268 ], "P_xyz": [ 1.399, 9.136, 0.534 ], "form": ".", "ssZp": 3.488, "Dp": 3.581, "splay_angle": 23.252, "splay_distance": 3.851, "splay_ratio": 0.202, "d22": 4.496, "d64": 3.846, "eta": 167.604, "theta": -122.343, "eta_prime": -172.030, "theta_prime": -131.980, "eta_base": -131.381, "theta_base": -116.197, "v0": 5.553, "v1": -28.753, "v2": 40.025, "v3": -37.817, "v4": 20.396, "amplitude": 40.772, "phase_angle": 10.983, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.665, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 178.595, 206.158, 255.046 ], "x_axis": [ 0.358, 0.342, -0.869 ], "y_axis": [ -0.789, 0.608, -0.086 ], "z_axis": [ 0.499, 0.716, 0.488 ], "quaternion": [ 0.783, -0.256, 0.436, 0.361 ] } }, { "index": 1361, "index_chain": 1361, "chain_name": "A", "nt_resnum": 1439, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1439", "linked_nts": [ "///A/1438", "///A/1440" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -163.995, "beta": -173.927, "gamma": 50.906, "delta": 82.084, "epsilon": 174.234, "zeta": -79.534, "epsilon_zeta": -106.232, "bb_type": "BI", "chi": -147.418, "glyco_bond": "anti", "C5prime_xyz": [ -1.522, 8.816, -0.261 ], "P_xyz": [ 0.955, 9.625, 0.016 ], "form": "A", "ssZp": 3.905, "Dp": 4.162, "splay_angle": 20.221, "splay_distance": 3.349, "splay_ratio": 0.178, "d22": null, "d64": null, "eta": 134.509, "theta": -145.148, "eta_prime": 160.589, "theta_prime": -150.433, "eta_base": -165.315, "theta_base": -125.142, "v0": -2.249, "v1": -19.393, "v2": 32.323, "v3": -34.522, "v4": 23.223, "amplitude": 34.911, "phase_angle": 22.202, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 181.291, 208.309, 256.760 ], "x_axis": [ -0.340, 0.200, -0.919 ], "y_axis": [ -0.849, 0.355, 0.391 ], "z_axis": [ 0.404, 0.913, 0.049 ], "quaternion": [ 0.516, -0.253, 0.641, 0.508 ] } }, { "index": 1362, "index_chain": 1362, "chain_name": "A", "nt_resnum": 1440, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1440", "linked_nts": [ "///A/1439", "///A/1441" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 166.325, "beta": -142.377, "gamma": 156.941, "delta": 82.519, "epsilon": -87.574, "zeta": -140.443, "epsilon_zeta": 52.868, "bb_type": "--", "chi": -170.155, "glyco_bond": "anti", "C5prime_xyz": [ -1.591, 8.747, 1.112 ], "P_xyz": [ 0.576, 9.671, -0.018 ], "form": "B", "ssZp": 4.032, "Dp": 4.406, "splay_angle": 16.426, "splay_distance": 2.762, "splay_ratio": 0.147, "d22": null, "d64": null, "eta": -179.771, "theta": -139.924, "eta_prime": -170.974, "theta_prime": -146.396, "eta_base": -135.848, "theta_base": -111.760, "v0": -2.179, "v1": -19.581, "v2": 32.616, "v3": -34.786, "v4": 23.291, "amplitude": 35.192, "phase_angle": 22.058, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.186, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 183.343, 210.799, 255.862 ], "x_axis": [ -0.706, 0.331, -0.626 ], "y_axis": [ -0.550, 0.300, 0.779 ], "z_axis": [ 0.446, 0.895, -0.030 ], "quaternion": [ 0.375, -0.077, 0.714, 0.586 ] } }, { "index": 1363, "index_chain": 1363, "chain_name": "A", "nt_resnum": 1441, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1441", "linked_nts": [ "///A/1440", "///A/1442" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 90.462, "beta": -96.780, "gamma": 178.904, "delta": 82.798, "epsilon": -114.012, "zeta": -41.398, "epsilon_zeta": -72.614, "bb_type": "--", "chi": -161.279, "glyco_bond": "anti", "C5prime_xyz": [ -1.224, 8.641, 0.642 ], "P_xyz": [ -0.148, 8.952, -1.722 ], "form": ".", "ssZp": 4.264, "Dp": 4.738, "splay_angle": 36.779, "splay_distance": 6.432, "splay_ratio": 0.323, "d22": null, "d64": null, "eta": 148.409, "theta": -120.524, "eta_prime": 171.276, "theta_prime": -142.738, "eta_base": -138.435, "theta_base": -138.821, "v0": 3.910, "v1": -24.913, "v2": 35.349, "v3": -34.076, "v4": 19.041, "amplitude": 36.219, "phase_angle": 12.588, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 183.844, 213.485, 255.453 ], "x_axis": [ -0.858, 0.468, -0.210 ], "y_axis": [ -0.001, 0.408, 0.913 ], "z_axis": [ 0.513, 0.784, -0.350 ], "quaternion": [ 0.223, 0.145, 0.809, 0.524 ] } }, { "index": 1364, "index_chain": 1364, "chain_name": "A", "nt_resnum": 1442, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1442", "linked_nts": [ "///A/1441", "///A/1443" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -131.719, "beta": 104.150, "gamma": 163.871, "delta": 82.411, "epsilon": -118.444, "zeta": -91.095, "epsilon_zeta": -27.349, "bb_type": "--", "chi": 170.819, "glyco_bond": "anti", "C5prime_xyz": [ -1.521, 8.083, 2.174 ], "P_xyz": [ -1.264, 10.527, 1.266 ], "form": "A", "ssZp": 4.718, "Dp": 4.732, "splay_angle": 24.214, "splay_distance": 3.739, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 173.331, "theta": 169.039, "eta_prime": -178.015, "theta_prime": -173.593, "eta_base": -153.818, "theta_base": -129.922, "v0": 3.764, "v1": -24.892, "v2": 35.422, "v3": -34.230, "v4": 19.227, "amplitude": 36.327, "phase_angle": 12.817, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.010, "filter_rmsd": 0.043, "frame": { "rmsd": 0.011, "origin": [ 184.733, 218.491, 251.515 ], "x_axis": [ -0.963, 0.195, 0.188 ], "y_axis": [ 0.180, -0.056, 0.982 ], "z_axis": [ 0.201, 0.979, 0.018 ], "quaternion": [ 0.005, 0.136, 0.687, 0.714 ] } }, { "index": 1365, "index_chain": 1365, "chain_name": "A", "nt_resnum": 1443, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1443", "linked_nts": [ "///A/1442", "///A/1444" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor", "alpha": -49.006, "beta": 153.780, "gamma": 50.140, "delta": 80.420, "epsilon": -153.469, "zeta": -73.785, "epsilon_zeta": -79.684, "bb_type": "BI", "chi": -173.362, "glyco_bond": "anti", "C5prime_xyz": [ -1.486, 8.648, 1.288 ], "P_xyz": [ 1.076, 8.875, 1.688 ], "form": "A", "ssZp": 4.499, "Dp": 4.546, "splay_angle": 24.034, "splay_distance": 3.955, "splay_ratio": 0.215, "d22": 4.820, "d64": 5.147, "eta": 162.585, "theta": -147.237, "eta_prime": -178.396, "theta_prime": -149.102, "eta_base": -126.419, "theta_base": -141.092, "v0": 0.056, "v1": -22.867, "v2": 35.675, "v3": -36.641, "v4": 23.076, "amplitude": 37.624, "phase_angle": 18.526, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.337, "filter_rmsd": 0.061, "frame": { "rmsd": 0.008, "origin": [ 183.984, 221.968, 250.361 ], "x_axis": [ -0.621, 0.068, 0.781 ], "y_axis": [ 0.761, -0.186, 0.621 ], "z_axis": [ 0.187, 0.980, 0.064 ], "quaternion": [ -0.254, 0.354, 0.585, 0.684 ] } }, { "index": 1366, "index_chain": 1366, "chain_name": "A", "nt_resnum": 1444, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1444", "linked_nts": [ "///A/1443", "///A/1445" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -60.456, "beta": -178.806, "gamma": 47.811, "delta": 80.840, "epsilon": -156.509, "zeta": -78.000, "epsilon_zeta": -78.509, "bb_type": "BI", "chi": -162.480, "glyco_bond": "anti", "C5prime_xyz": [ -1.590, 8.852, 0.634 ], "P_xyz": [ 0.788, 9.559, 1.460 ], "form": "A", "ssZp": 4.292, "Dp": 4.431, "splay_angle": 24.476, "splay_distance": 3.864, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 172.589, "theta": -157.392, "eta_prime": -178.318, "theta_prime": -155.376, "eta_base": -157.674, "theta_base": -128.591, "v0": -2.920, "v1": -19.651, "v2": 33.436, "v3": -36.051, "v4": 24.568, "amplitude": 36.350, "phase_angle": 23.098, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.910, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 182.942, 225.256, 248.426 ], "x_axis": [ -0.275, -0.109, 0.955 ], "y_axis": [ 0.951, -0.175, 0.254 ], "z_axis": [ 0.140, 0.978, 0.152 ], "quaternion": [ -0.419, 0.433, 0.487, 0.633 ] } }, { "index": 1367, "index_chain": 1367, "chain_name": "A", "nt_resnum": 1445, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1445", "linked_nts": [ "///A/1444", "///A/1446" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -59.944, "beta": 170.384, "gamma": 48.993, "delta": 81.194, "epsilon": -143.062, "zeta": -74.395, "epsilon_zeta": -68.667, "bb_type": "BI", "chi": -171.788, "glyco_bond": "anti", "C5prime_xyz": [ -1.455, 8.575, 1.222 ], "P_xyz": [ 1.051, 8.901, 1.902 ], "form": "A", "ssZp": 4.583, "Dp": 4.632, "splay_angle": 23.807, "splay_distance": 3.771, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 169.240, "theta": -141.548, "eta_prime": 178.434, "theta_prime": -139.190, "eta_base": -144.771, "theta_base": -107.415, "v0": 1.095, "v1": -23.230, "v2": 35.309, "v3": -35.678, "v4": 21.799, "amplitude": 36.915, "phase_angle": 16.965, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.901, "filter_rmsd": 0.042, "frame": { "rmsd": 0.012, "origin": [ 182.223, 229.052, 248.519 ], "x_axis": [ 0.199, -0.319, 0.927 ], "y_axis": [ 0.938, -0.212, -0.275 ], "z_axis": [ 0.284, 0.924, 0.257 ], "quaternion": [ 0.558, -0.537, -0.288, -0.563 ] } }, { "index": 1368, "index_chain": 1368, "chain_name": "A", "nt_resnum": 1446, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1446", "linked_nts": [ "///A/1445", "///A/1447" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper", "alpha": -59.001, "beta": 163.519, "gamma": 56.536, "delta": 79.487, "epsilon": -154.860, "zeta": -71.365, "epsilon_zeta": -83.495, "bb_type": "BI", "chi": -170.936, "glyco_bond": "anti", "C5prime_xyz": [ -1.548, 8.699, 1.139 ], "P_xyz": [ 0.999, 9.167, 1.423 ], "form": "A", "ssZp": 4.536, "Dp": 4.562, "splay_angle": 23.361, "splay_distance": 3.741, "splay_ratio": 0.207, "d22": 4.581, "d64": 4.638, "eta": 166.696, "theta": -148.936, "eta_prime": -175.269, "theta_prime": -149.625, "eta_base": -125.243, "theta_base": -129.919, "v0": -0.578, "v1": -22.646, "v2": 35.930, "v3": -37.233, "v4": 23.842, "amplitude": 38.100, "phase_angle": 19.430, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.916, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 182.111, 231.971, 250.904 ], "x_axis": [ 0.708, -0.403, 0.580 ], "y_axis": [ 0.636, 0.008, -0.772 ], "z_axis": [ 0.306, 0.915, 0.262 ], "quaternion": [ 0.703, -0.600, -0.097, -0.369 ] } }, { "index": 1369, "index_chain": 1369, "chain_name": "A", "nt_resnum": 1447, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1447", "linked_nts": [ "///A/1446", "///A/1448" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,ribose-zipper", "alpha": -60.432, "beta": -174.897, "gamma": 42.522, "delta": 80.457, "epsilon": -176.865, "zeta": -85.916, "epsilon_zeta": -90.949, "bb_type": "BI", "chi": -161.329, "glyco_bond": "anti", "C5prime_xyz": [ -1.275, 8.757, 0.622 ], "P_xyz": [ 1.144, 9.249, 1.471 ], "form": "A", "ssZp": 4.306, "Dp": 4.372, "splay_angle": 23.502, "splay_distance": 3.779, "splay_ratio": 0.207, "d22": 4.592, "d64": 4.655, "eta": 169.050, "theta": -149.196, "eta_prime": -179.686, "theta_prime": -144.589, "eta_base": -145.680, "theta_base": -127.753, "v0": 1.221, "v1": -23.540, "v2": 35.747, "v3": -36.068, "v4": 21.970, "amplitude": 37.346, "phase_angle": 16.829, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.746, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 181.932, 234.724, 253.430 ], "x_axis": [ 0.886, -0.460, 0.054 ], "y_axis": [ 0.177, 0.227, -0.958 ], "z_axis": [ 0.429, 0.858, 0.283 ], "quaternion": [ 0.774, -0.586, 0.121, -0.206 ] } }, { "index": 1370, "index_chain": 1370, "chain_name": "A", "nt_resnum": 1448, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1448", "linked_nts": [ "///A/1447", "///A/1449" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": 169.437, "beta": -148.030, "gamma": 178.025, "delta": 146.972, "epsilon": -114.767, "zeta": 177.796, "epsilon_zeta": 67.438, "bb_type": "BII", "chi": -161.070, "glyco_bond": "anti", "C5prime_xyz": [ -1.698, 8.527, 1.026 ], "P_xyz": [ 0.672, 9.440, 0.425 ], "form": ".", "ssZp": 1.383, "Dp": 1.390, "splay_angle": 48.611, "splay_distance": 7.845, "splay_ratio": 0.413, "d22": 7.154, "d64": 7.031, "eta": -138.349, "theta": 156.893, "eta_prime": -131.905, "theta_prime": 157.101, "eta_base": -116.184, "theta_base": 130.184, "v0": -19.895, "v1": 34.033, "v2": -34.408, "v3": 23.761, "v4": -2.613, "amplitude": 35.554, "phase_angle": 165.415, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.653, "filter_rmsd": 0.099, "frame": { "rmsd": 0.008, "origin": [ 183.091, 237.066, 256.160 ], "x_axis": [ 0.813, -0.413, -0.411 ], "y_axis": [ -0.198, 0.468, -0.862 ], "z_axis": [ 0.547, 0.782, 0.299 ], "quaternion": [ 0.803, -0.512, 0.298, -0.067 ] } }, { "index": 1371, "index_chain": 1371, "chain_name": "A", "nt_resnum": 1449, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1449", "linked_nts": [ "///A/1448", "///A/1450" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,bulge", "alpha": 165.370, "beta": -130.761, "gamma": 68.515, "delta": 83.350, "epsilon": -149.840, "zeta": -54.638, "epsilon_zeta": -95.201, "bb_type": "BI", "chi": -143.062, "glyco_bond": "anti", "C5prime_xyz": [ -1.396, 8.797, -0.500 ], "P_xyz": [ 1.127, 9.038, 0.158 ], "form": ".", "ssZp": 3.762, "Dp": 4.510, "splay_angle": 55.731, "splay_distance": 9.337, "splay_ratio": 0.469, "d22": 5.264, "d64": 6.846, "eta": 118.300, "theta": -103.064, "eta_prime": 111.372, "theta_prime": -106.920, "eta_base": 98.594, "theta_base": -90.133, "v0": -0.745, "v1": -20.511, "v2": 32.730, "v3": -34.088, "v4": 22.011, "amplitude": 34.794, "phase_angle": 19.834, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.059, "frame": { "rmsd": 0.008, "origin": [ 175.332, 236.651, 257.239 ], "x_axis": [ 0.761, -0.373, -0.530 ], "y_axis": [ 0.113, 0.881, -0.459 ], "z_axis": [ 0.639, 0.289, 0.713 ], "quaternion": [ 0.916, -0.204, 0.319, -0.133 ] } }, { "index": 1372, "index_chain": 1372, "chain_name": "A", "nt_resnum": 1450, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1450", "linked_nts": [ "///A/1449", "///A/1451" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end,coaxial-stack,bulge", "alpha": -175.044, "beta": -179.589, "gamma": 173.623, "delta": 82.102, "epsilon": -137.730, "zeta": -69.884, "epsilon_zeta": -67.846, "bb_type": "BI", "chi": 175.011, "glyco_bond": "anti", "C5prime_xyz": [ -1.360, 8.288, 1.970 ], "P_xyz": [ 0.283, 10.262, 1.535 ], "form": "A", "ssZp": 4.601, "Dp": 4.657, "splay_angle": 22.051, "splay_distance": 3.564, "splay_ratio": 0.198, "d22": 4.721, "d64": 4.506, "eta": -177.075, "theta": -164.625, "eta_prime": -156.162, "theta_prime": -157.862, "eta_base": -118.286, "theta_base": -132.336, "v0": 3.252, "v1": -24.718, "v2": 35.679, "v3": -34.784, "v4": 19.872, "amplitude": 36.717, "phase_angle": 13.659, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.245, "filter_rmsd": 0.066, "frame": { "rmsd": 0.008, "origin": [ 184.268, 238.949, 258.674 ], "x_axis": [ 0.301, 0.181, -0.936 ], "y_axis": [ -0.809, 0.568, -0.150 ], "z_axis": [ 0.505, 0.803, 0.317 ], "quaternion": [ 0.739, -0.322, 0.487, 0.335 ] } }, { "index": 1373, "index_chain": 1373, "chain_name": "A", "nt_resnum": 1451, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1451", "linked_nts": [ "///A/1450", "///A/1452" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.895, "beta": -166.382, "gamma": 31.938, "delta": 81.431, "epsilon": -174.343, "zeta": -93.403, "epsilon_zeta": -80.940, "bb_type": "BI", "chi": -154.651, "glyco_bond": "anti", "C5prime_xyz": [ -1.279, 8.675, 0.230 ], "P_xyz": [ 1.061, 9.338, 1.196 ], "form": "A", "ssZp": 4.277, "Dp": 4.449, "splay_angle": 25.051, "splay_distance": 4.003, "splay_ratio": 0.220, "d22": 4.573, "d64": 4.977, "eta": 159.264, "theta": -150.477, "eta_prime": 172.723, "theta_prime": -148.793, "eta_base": -152.027, "theta_base": -127.786, "v0": 3.660, "v1": -25.193, "v2": 36.051, "v3": -34.973, "v4": 19.730, "amplitude": 37.017, "phase_angle": 13.115, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.287, "filter_rmsd": 0.102, "frame": { "rmsd": 0.007, "origin": [ 187.561, 240.062, 259.459 ], "x_axis": [ -0.298, 0.360, -0.884 ], "y_axis": [ -0.791, 0.426, 0.440 ], "z_axis": [ 0.535, 0.830, 0.158 ], "quaternion": [ 0.567, -0.172, 0.626, 0.507 ] } }, { "index": 1374, "index_chain": 1374, "chain_name": "A", "nt_resnum": 1452, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1452", "linked_nts": [ "///A/1451", "///A/1453" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 166.109, "beta": -133.428, "gamma": 161.758, "delta": 81.154, "epsilon": -133.546, "zeta": -77.911, "epsilon_zeta": -55.634, "bb_type": "BI", "chi": -176.478, "glyco_bond": "anti", "C5prime_xyz": [ -1.394, 8.558, 1.488 ], "P_xyz": [ 0.746, 9.402, 0.270 ], "form": "A", "ssZp": 4.605, "Dp": 4.646, "splay_angle": 21.319, "splay_distance": 3.434, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 171.005, "theta": -145.194, "eta_prime": -174.886, "theta_prime": -149.563, "eta_base": -143.345, "theta_base": -122.959, "v0": 0.614, "v1": -22.681, "v2": 34.937, "v3": -35.588, "v4": 22.035, "amplitude": 36.675, "phase_angle": 17.706, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.215, "filter_rmsd": 0.062, "frame": { "rmsd": 0.006, "origin": [ 190.731, 242.452, 258.949 ], "x_axis": [ -0.615, 0.487, -0.620 ], "y_axis": [ -0.567, 0.273, 0.777 ], "z_axis": [ 0.547, 0.830, 0.109 ], "quaternion": [ 0.438, -0.030, 0.667, 0.602 ] } }, { "index": 1375, "index_chain": 1375, "chain_name": "A", "nt_resnum": 1453, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1453", "linked_nts": [ "///A/1452", "///A/1454" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -50.290, "beta": 170.540, "gamma": 34.776, "delta": 80.336, "epsilon": -142.588, "zeta": -86.101, "epsilon_zeta": -56.487, "bb_type": "BI", "chi": -163.419, "glyco_bond": "anti", "C5prime_xyz": [ -1.621, 8.678, 0.727 ], "P_xyz": [ 0.790, 9.290, 1.503 ], "form": "A", "ssZp": 4.454, "Dp": 4.638, "splay_angle": 23.655, "splay_distance": 3.750, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 161.384, "theta": -150.516, "eta_prime": 175.559, "theta_prime": -145.556, "eta_base": -139.964, "theta_base": -113.203, "v0": 0.485, "v1": -22.953, "v2": 35.477, "v3": -36.216, "v4": 22.522, "amplitude": 37.285, "phase_angle": 17.916, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.375, "filter_rmsd": 0.038, "frame": { "rmsd": 0.009, "origin": [ 192.466, 245.048, 257.519 ], "x_axis": [ -0.926, 0.374, -0.060 ], "y_axis": [ -0.078, -0.034, 0.996 ], "z_axis": [ 0.370, 0.927, 0.061 ], "quaternion": [ 0.159, 0.109, 0.677, 0.711 ] } }, { "index": 1376, "index_chain": 1376, "chain_name": "A", "nt_resnum": 1454, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1454", "linked_nts": [ "///A/1453", "///A/1455" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -40.909, "beta": 155.532, "gamma": 45.848, "delta": 78.806, "epsilon": -161.874, "zeta": -98.888, "epsilon_zeta": -62.987, "bb_type": "BI", "chi": -162.407, "glyco_bond": "anti", "C5prime_xyz": [ -1.519, 8.802, 0.661 ], "P_xyz": [ 1.058, 9.206, 0.771 ], "form": "A", "ssZp": 4.443, "Dp": 4.524, "splay_angle": 19.225, "splay_distance": 3.157, "splay_ratio": 0.172, "d22": 4.245, "d64": 4.455, "eta": 168.608, "theta": -140.812, "eta_prime": -175.194, "theta_prime": -150.897, "eta_base": -129.488, "theta_base": -136.693, "v0": -0.029, "v1": -23.105, "v2": 36.241, "v3": -37.271, "v4": 23.489, "amplitude": 38.254, "phase_angle": 18.668, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.428, "filter_rmsd": 0.060, "frame": { "rmsd": 0.005, "origin": [ 192.717, 248.652, 256.514 ], "x_axis": [ -0.829, 0.250, 0.501 ], "y_axis": [ 0.462, -0.199, 0.864 ], "z_axis": [ 0.316, 0.948, 0.049 ], "quaternion": [ -0.074, 0.283, 0.629, 0.721 ] } }, { "index": 1377, "index_chain": 1377, "chain_name": "A", "nt_resnum": 1455, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1455", "linked_nts": [ "///A/1454", "///A/1456" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,A-minor,ribose-zipper", "alpha": 152.446, "beta": -140.296, "gamma": 163.912, "delta": 76.429, "epsilon": 43.698, "zeta": 142.575, "epsilon_zeta": -98.877, "bb_type": "--", "chi": 178.099, "glyco_bond": "anti", "C5prime_xyz": [ -1.273, 8.311, 1.784 ], "P_xyz": [ 0.689, 9.517, 0.558 ], "form": ".", "ssZp": 3.438, "Dp": 3.408, "splay_angle": 22.462, "splay_distance": 3.755, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": -153.753, "theta": -133.524, "eta_prime": -159.916, "theta_prime": -137.643, "eta_base": -134.196, "theta_base": -112.457, "v0": 6.430, "v1": -29.498, "v2": 40.436, "v3": -37.695, "v4": 19.650, "amplitude": 41.030, "phase_angle": 9.765, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.235, "filter_rmsd": 0.061, "frame": { "rmsd": 0.004, "origin": [ 192.511, 251.470, 255.105 ], "x_axis": [ -0.570, 0.086, 0.817 ], "y_axis": [ 0.805, -0.143, 0.576 ], "z_axis": [ 0.166, 0.986, 0.013 ], "quaternion": [ -0.274, 0.375, 0.595, 0.657 ] } }, { "index": 1378, "index_chain": 1378, "chain_name": "A", "nt_resnum": 1456, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1456", "linked_nts": [ "///A/1455", "///A/1457" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,ribose-zipper,phosphate", "alpha": 16.908, "beta": -100.981, "gamma": -169.751, "delta": 80.677, "epsilon": -167.850, "zeta": -71.349, "epsilon_zeta": -96.501, "bb_type": "BI", "chi": -176.290, "glyco_bond": "anti", "C5prime_xyz": [ -1.718, 8.544, 1.432 ], "P_xyz": [ -0.590, 9.747, -0.598 ], "form": ".", "ssZp": 4.410, "Dp": 4.441, "splay_angle": 28.599, "splay_distance": 4.290, "splay_ratio": 0.249, "d22": null, "d64": null, "eta": 126.078, "theta": -174.675, "eta_prime": 170.851, "theta_prime": -157.283, "eta_base": -141.839, "theta_base": -162.613, "v0": -0.496, "v1": -21.866, "v2": 34.692, "v3": -35.907, "v4": 22.969, "amplitude": 36.771, "phase_angle": 19.354, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.005, "origin": [ 192.095, 255.202, 255.078 ], "x_axis": [ -0.115, 0.022, 0.993 ], "y_axis": [ 0.986, -0.123, 0.116 ], "z_axis": [ 0.124, 0.992, -0.008 ], "quaternion": [ -0.434, 0.504, 0.500, 0.554 ] } }, { "index": 1379, "index_chain": 1379, "chain_name": "A", "nt_resnum": 1457, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1457", "linked_nts": [ "///A/1456", "///A/1458" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart", "alpha": -111.657, "beta": -102.684, "gamma": 64.126, "delta": 146.769, "epsilon": -132.999, "zeta": 89.391, "epsilon_zeta": 137.611, "bb_type": "--", "chi": -96.535, "glyco_bond": "anti", "C5prime_xyz": [ -2.175, 7.850, -2.275 ], "P_xyz": [ -0.113, 8.821, -0.985 ], "form": ".", "ssZp": 1.293, "Dp": 1.686, "splay_angle": 87.943, "splay_distance": 13.392, "splay_ratio": 0.696, "d22": 9.386, "d64": 11.575, "eta": -168.651, "theta": 92.700, "eta_prime": -165.571, "theta_prime": 84.434, "eta_base": -170.026, "theta_base": 116.864, "v0": -18.204, "v1": 32.467, "v2": -33.617, "v3": 23.970, "v4": -3.805, "amplitude": 34.430, "phase_angle": 167.522, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.002, "origin": [ 190.320, 258.944, 253.962 ], "x_axis": [ 0.183, -0.562, 0.807 ], "y_axis": [ 0.982, 0.065, -0.177 ], "z_axis": [ 0.048, 0.825, 0.564 ], "quaternion": [ 0.673, -0.372, -0.282, -0.574 ] } }, { "index": 1380, "index_chain": 1380, "chain_name": "A", "nt_resnum": 1458, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1458", "linked_nts": [ "///A/1457", "///A/1459" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,non-pair-contact,internal-loop,splayed-apart", "alpha": -82.019, "beta": 162.588, "gamma": 56.544, "delta": 84.488, "epsilon": -153.218, "zeta": 169.754, "epsilon_zeta": 37.028, "bb_type": "--", "chi": -147.958, "glyco_bond": "anti", "C5prime_xyz": [ -1.383, 8.722, -0.152 ], "P_xyz": [ 1.214, 8.934, -0.482 ], "form": ".", "ssZp": 4.012, "Dp": 4.504, "splay_angle": 118.344, "splay_distance": 15.251, "splay_ratio": 0.859, "d22": 7.555, "d64": 8.385, "eta": 179.014, "theta": 112.358, "eta_prime": -165.166, "theta_prime": 64.051, "eta_base": -162.583, "theta_base": -6.409, "v0": 2.314, "v1": -22.878, "v2": 33.608, "v3": -33.250, "v4": 19.511, "amplitude": 34.782, "phase_angle": 14.924, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.017, "filter_rmsd": 0.102, "frame": { "rmsd": 0.006, "origin": [ 193.326, 262.011, 241.278 ], "x_axis": [ -0.634, 0.656, 0.410 ], "y_axis": [ 0.625, 0.122, 0.771 ], "z_axis": [ 0.456, 0.745, -0.487 ], "quaternion": [ 0.015, 0.428, 0.749, 0.506 ] } }, { "index": 1381, "index_chain": 1381, "chain_name": "A", "nt_resnum": 1459, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1459", "linked_nts": [ "///A/1458", "///A/1460" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,k-turn,anti,~C3'-endo,non-stack,internal-loop,splayed-apart", "alpha": 47.516, "beta": -130.118, "gamma": 87.852, "delta": 81.725, "epsilon": -119.940, "zeta": -45.310, "epsilon_zeta": -74.630, "bb_type": "--", "chi": -157.079, "glyco_bond": "anti", "C5prime_xyz": [ -1.246, 8.667, 0.348 ], "P_xyz": [ 1.356, 8.335, 0.446 ], "form": ".", "ssZp": 4.193, "Dp": 4.786, "splay_angle": 117.689, "splay_distance": 14.358, "splay_ratio": 0.857, "d22": null, "d64": null, "eta": 23.621, "theta": -86.178, "eta_prime": 34.565, "theta_prime": -83.669, "eta_base": 94.410, "theta_base": -55.785, "v0": 5.070, "v1": -26.907, "v2": 37.385, "v3": -35.457, "v4": 19.128, "amplitude": 38.099, "phase_angle": 11.116, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 202.894, 265.758, 252.547 ], "x_axis": [ -0.899, 0.419, -0.132 ], "y_axis": [ 0.044, -0.212, -0.976 ], "z_axis": [ -0.437, -0.883, 0.172 ], "quaternion": [ 0.124, -0.188, -0.615, 0.756 ] } }, { "index": 1382, "index_chain": 1382, "chain_name": "A", "nt_resnum": 1460, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1460", "linked_nts": [ "///A/1459", "///A/1461" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,ribose-zipper,phosphate,splayed-apart", "alpha": -89.955, "beta": -100.442, "gamma": 94.206, "delta": 83.357, "epsilon": -173.527, "zeta": -104.363, "epsilon_zeta": -69.164, "bb_type": "BI", "chi": -113.538, "glyco_bond": "anti", "C5prime_xyz": [ -1.698, 8.173, -2.084 ], "P_xyz": [ 0.742, 7.221, -2.254 ], "form": ".", "ssZp": 2.456, "Dp": 4.400, "splay_angle": 51.102, "splay_distance": 8.114, "splay_ratio": 0.433, "d22": null, "d64": null, "eta": -134.458, "theta": -173.872, "eta_prime": -110.453, "theta_prime": 173.493, "eta_base": -109.963, "theta_base": 166.081, "v0": 4.105, "v1": -25.370, "v2": 35.808, "v3": -34.415, "v4": 19.110, "amplitude": 36.651, "phase_angle": 12.310, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 196.986, 258.435, 241.702 ], "x_axis": [ 0.626, 0.044, -0.778 ], "y_axis": [ 0.773, -0.161, 0.613 ], "z_axis": [ -0.099, -0.986, -0.135 ], "quaternion": [ 0.577, 0.693, 0.295, -0.316 ] } }, { "index": 1383, "index_chain": 1383, "chain_name": "A", "nt_resnum": 1461, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1461", "linked_nts": [ "///A/1460", "///A/1462" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper", "alpha": -86.448, "beta": 169.498, "gamma": 66.356, "delta": 79.780, "epsilon": -135.353, "zeta": -55.583, "epsilon_zeta": -79.770, "bb_type": "BI", "chi": -161.464, "glyco_bond": "anti", "C5prime_xyz": [ -1.186, 8.630, 0.604 ], "P_xyz": [ 1.380, 8.928, 0.213 ], "form": ".", "ssZp": 4.452, "Dp": 4.763, "splay_angle": 37.393, "splay_distance": 5.750, "splay_ratio": 0.321, "d22": null, "d64": null, "eta": 163.412, "theta": -120.176, "eta_prime": 154.725, "theta_prime": -114.853, "eta_base": 157.045, "theta_base": -74.674, "v0": 5.676, "v1": -28.535, "v2": 39.362, "v3": -37.087, "v4": 19.805, "amplitude": 40.046, "phase_angle": 10.604, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.402, "filter_rmsd": 0.039, "frame": { "rmsd": 0.005, "origin": [ 194.510, 251.914, 245.849 ], "x_axis": [ 0.306, 0.408, -0.860 ], "y_axis": [ 0.873, 0.242, 0.425 ], "z_axis": [ 0.381, -0.880, -0.282 ], "quaternion": [ 0.562, 0.580, 0.552, -0.206 ] } }, { "index": 1384, "index_chain": 1384, "chain_name": "A", "nt_resnum": 1462, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1462", "linked_nts": [ "///A/1461", "///A/1463" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -66.723, "beta": 154.156, "gamma": 77.046, "delta": 81.558, "epsilon": -145.922, "zeta": -80.636, "epsilon_zeta": -65.286, "bb_type": "BI", "chi": -176.939, "glyco_bond": "anti", "C5prime_xyz": [ -1.494, 8.504, 1.501 ], "P_xyz": [ 1.053, 8.990, 1.128 ], "form": "A", "ssZp": 4.645, "Dp": 4.645, "splay_angle": 24.311, "splay_distance": 3.836, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 168.959, "theta": -146.317, "eta_prime": -156.106, "theta_prime": -149.104, "eta_base": -84.606, "theta_base": -128.355, "v0": 2.098, "v1": -24.017, "v2": 35.586, "v3": -35.290, "v4": 21.000, "amplitude": 36.912, "phase_angle": 15.403, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.194, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 198.306, 251.334, 241.569 ], "x_axis": [ 0.889, 0.443, -0.121 ], "y_axis": [ 0.239, -0.222, 0.945 ], "z_axis": [ 0.391, -0.869, -0.303 ], "quaternion": [ 0.584, 0.777, 0.219, 0.087 ] } }, { "index": 1385, "index_chain": 1385, "chain_name": "A", "nt_resnum": 1463, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1463", "linked_nts": [ "///A/1462", "///A/1464" ], "nt_type": "RNA", "dbn": "(", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -44.732, "beta": 166.938, "gamma": 45.777, "delta": 81.673, "epsilon": -152.503, "zeta": -80.020, "epsilon_zeta": -72.482, "bb_type": "BI", "chi": -168.021, "glyco_bond": "anti", "C5prime_xyz": [ -1.407, 8.758, 0.994 ], "P_xyz": [ 1.061, 9.079, 1.796 ], "form": ".", "ssZp": 4.360, "Dp": 4.457, "splay_angle": 27.585, "splay_distance": 4.393, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": 176.372, "theta": -115.689, "eta_prime": -170.300, "theta_prime": -121.320, "eta_base": -133.625, "theta_base": -70.464, "v0": -1.684, "v1": -19.962, "v2": 32.839, "v3": -34.748, "v4": 22.996, "amplitude": 35.254, "phase_angle": 21.330, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.597, "filter_rmsd": 0.064, "frame": { "rmsd": 0.005, "origin": [ 199.495, 249.178, 238.628 ], "x_axis": [ 0.863, 0.283, 0.419 ], "y_axis": [ -0.294, -0.393, 0.871 ], "z_axis": [ 0.411, -0.875, -0.256 ], "quaternion": [ 0.551, 0.792, -0.004, 0.262 ] } }, { "index": 1386, "index_chain": 1386, "chain_name": "A", "nt_resnum": 1464, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1464", "linked_nts": [ "///A/1463", "///A/1465" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 145.867, "beta": -139.949, "gamma": 164.765, "delta": 83.038, "epsilon": -90.104, "zeta": -162.453, "epsilon_zeta": 72.349, "bb_type": "BII", "chi": 169.900, "glyco_bond": "anti", "C5prime_xyz": [ -1.494, 8.001, 2.207 ], "P_xyz": [ 0.659, 9.227, 1.402 ], "form": ".", "ssZp": 4.721, "Dp": 4.727, "splay_angle": 67.256, "splay_distance": 10.887, "splay_ratio": 0.559, "d22": null, "d64": null, "eta": 161.579, "theta": 162.855, "eta_prime": -175.933, "theta_prime": 159.838, "eta_base": -100.872, "theta_base": 153.904, "v0": 5.240, "v1": -26.226, "v2": 36.105, "v3": -34.092, "v4": 18.228, "amplitude": 36.735, "phase_angle": 10.629, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.479, "filter_rmsd": 0.040, "frame": { "rmsd": 0.008, "origin": [ 203.233, 247.042, 239.505 ], "x_axis": [ 0.300, -0.060, 0.952 ], "y_axis": [ -0.858, -0.453, 0.242 ], "z_axis": [ 0.416, -0.890, -0.187 ], "quaternion": [ 0.406, 0.696, -0.330, 0.491 ] } }, { "index": 1387, "index_chain": 1387, "chain_name": "A", "nt_resnum": 1465, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1465", "linked_nts": [ "///A/1464", "///A/1466" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": 38.676, "beta": -97.296, "gamma": -104.236, "delta": 149.969, "epsilon": -134.884, "zeta": -80.414, "epsilon_zeta": -54.470, "bb_type": "BI", "chi": -178.982, "glyco_bond": "anti", "C5prime_xyz": [ -1.813, 7.946, 2.012 ], "P_xyz": [ -1.173, 10.451, 1.698 ], "form": ".", "ssZp": 1.404, "Dp": 1.734, "splay_angle": 89.307, "splay_distance": 13.062, "splay_ratio": 0.703, "d22": null, "d64": null, "eta": -107.589, "theta": -133.982, "eta_prime": -131.005, "theta_prime": -170.783, "eta_base": -158.091, "theta_base": 149.410, "v0": -14.278, "v1": 30.521, "v2": -34.159, "v3": 26.752, "v4": -8.034, "amplitude": 34.313, "phase_angle": 174.559, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 202.851, 245.485, 228.737 ], "x_axis": [ 0.754, 0.397, 0.523 ], "y_axis": [ -0.413, -0.332, 0.848 ], "z_axis": [ 0.511, -0.855, -0.087 ], "quaternion": [ 0.578, 0.737, -0.005, 0.350 ] } }, { "index": 1388, "index_chain": 1388, "chain_name": "A", "nt_resnum": 1466, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1466", "linked_nts": [ "///A/1465", "///A/1467" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart", "alpha": 137.599, "beta": 162.500, "gamma": 60.977, "delta": 145.300, "epsilon": -105.188, "zeta": -76.943, "epsilon_zeta": -28.245, "bb_type": "--", "chi": -117.356, "glyco_bond": "anti", "C5prime_xyz": [ -1.943, 8.441, -1.389 ], "P_xyz": [ 0.637, 8.905, -1.334 ], "form": ".", "ssZp": 1.089, "Dp": 1.189, "splay_angle": 109.677, "splay_distance": 15.478, "splay_ratio": 0.819, "d22": null, "d64": null, "eta": 7.982, "theta": -57.030, "eta_prime": 72.396, "theta_prime": -81.796, "eta_base": 58.535, "theta_base": -44.549, "v0": -21.157, "v1": 34.461, "v2": -33.834, "v3": 22.510, "v4": -1.020, "amplitude": 35.404, "phase_angle": 162.873, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2z", "suiteness": 0.027, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 190.743, 242.995, 224.517 ], "x_axis": [ -0.460, 0.503, 0.731 ], "y_axis": [ 0.689, -0.316, 0.652 ], "z_axis": [ 0.559, 0.804, -0.201 ], "quaternion": [ -0.074, 0.514, 0.580, 0.628 ] } }, { "index": 1389, "index_chain": 1389, "chain_name": "A", "nt_resnum": 1467, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1467", "linked_nts": [ "///A/1466", "///A/1468" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor,splayed-apart", "alpha": -92.671, "beta": -160.308, "gamma": 57.197, "delta": 83.840, "epsilon": -152.768, "zeta": -68.109, "epsilon_zeta": -84.659, "bb_type": "BI", "chi": -174.069, "glyco_bond": "anti", "C5prime_xyz": [ -1.073, 8.406, 1.367 ], "P_xyz": [ 1.372, 8.293, 2.313 ], "form": ".", "ssZp": 4.644, "Dp": 4.650, "splay_angle": 29.322, "splay_distance": 4.574, "splay_ratio": 0.258, "d22": null, "d64": null, "eta": 148.084, "theta": -142.622, "eta_prime": -172.274, "theta_prime": -139.666, "eta_base": -146.632, "theta_base": -122.956, "v0": 6.806, "v1": -27.534, "v2": 36.655, "v3": -33.726, "v4": 17.012, "amplitude": 37.040, "phase_angle": 8.271, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.608, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 203.995, 241.648, 232.401 ], "x_axis": [ -0.761, -0.435, 0.481 ], "y_axis": [ -0.501, -0.076, -0.862 ], "z_axis": [ 0.412, -0.897, -0.160 ], "quaternion": [ -0.025, -0.345, 0.679, -0.647 ] } }, { "index": 1390, "index_chain": 1390, "chain_name": "A", "nt_resnum": 1468, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1468", "linked_nts": [ "///A/1467", "///A/1469" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.364, "beta": -172.433, "gamma": 50.403, "delta": 80.653, "epsilon": -135.479, "zeta": -79.116, "epsilon_zeta": -56.363, "bb_type": "BI", "chi": -173.927, "glyco_bond": "anti", "C5prime_xyz": [ -1.539, 8.580, 1.333 ], "P_xyz": [ 0.837, 8.977, 2.365 ], "form": "A", "ssZp": 4.645, "Dp": 4.682, "splay_angle": 23.644, "splay_distance": 3.709, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 176.145, "theta": -144.132, "eta_prime": -174.811, "theta_prime": -139.706, "eta_base": -147.927, "theta_base": -103.977, "v0": 1.526, "v1": -23.852, "v2": 35.865, "v3": -35.996, "v4": 21.708, "amplitude": 37.371, "phase_angle": 16.324, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.894, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 206.747, 238.331, 233.932 ], "x_axis": [ -0.967, -0.246, 0.069 ], "y_axis": [ -0.138, 0.275, -0.951 ], "z_axis": [ 0.216, -0.929, -0.300 ], "quaternion": [ 0.046, -0.120, 0.797, -0.590 ] } }, { "index": 1391, "index_chain": 1391, "chain_name": "A", "nt_resnum": 1469, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1469", "linked_nts": [ "///A/1468", "///A/1470" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.931, "beta": 154.875, "gamma": 66.954, "delta": 79.641, "epsilon": -140.274, "zeta": -81.190, "epsilon_zeta": -59.084, "bb_type": "BI", "chi": -177.392, "glyco_bond": "anti", "C5prime_xyz": [ -1.584, 8.558, 1.486 ], "P_xyz": [ 0.975, 9.065, 1.390 ], "form": "A", "ssZp": 4.687, "Dp": 4.679, "splay_angle": 21.422, "splay_distance": 3.396, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 165.534, "theta": -146.530, "eta_prime": -177.309, "theta_prime": -146.685, "eta_base": -125.814, "theta_base": -122.802, "v0": 0.356, "v1": -23.496, "v2": 36.366, "v3": -37.161, "v4": 23.221, "amplitude": 38.254, "phase_angle": 18.076, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.586, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 206.331, 234.659, 234.241 ], "x_axis": [ -0.864, -0.008, -0.503 ], "y_axis": [ 0.466, 0.363, -0.807 ], "z_axis": [ 0.189, -0.932, -0.310 ], "quaternion": [ 0.217, 0.144, 0.796, -0.546 ] } }, { "index": 1392, "index_chain": 1392, "chain_name": "A", "nt_resnum": 1470, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1470", "linked_nts": [ "///A/1469", "///A/1471" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -66.597, "beta": 165.951, "gamma": 64.067, "delta": 85.820, "epsilon": -144.082, "zeta": -63.851, "epsilon_zeta": -80.231, "bb_type": "BI", "chi": -166.246, "glyco_bond": "anti", "C5prime_xyz": [ -1.569, 8.753, 0.891 ], "P_xyz": [ 1.006, 9.169, 1.157 ], "form": ".", "ssZp": 4.292, "Dp": 4.422, "splay_angle": 29.231, "splay_distance": 4.545, "splay_ratio": 0.254, "d22": null, "d64": null, "eta": 172.913, "theta": -127.677, "eta_prime": -173.511, "theta_prime": -125.642, "eta_base": -135.790, "theta_base": -67.520, "v0": -2.493, "v1": -17.895, "v2": 30.168, "v3": -32.460, "v4": 22.093, "amplitude": 32.740, "phase_angle": 22.863, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.731, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 205.394, 231.400, 234.418 ], "x_axis": [ -0.464, 0.296, -0.835 ], "y_axis": [ 0.884, 0.218, -0.414 ], "z_axis": [ 0.059, -0.930, -0.363 ], "quaternion": [ 0.313, 0.413, 0.715, -0.470 ] } }, { "index": 1393, "index_chain": 1393, "chain_name": "A", "nt_resnum": 1471, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1471", "linked_nts": [ "///A/1470", "///A/1472" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -74.372, "beta": 173.031, "gamma": 59.866, "delta": 88.451, "epsilon": -159.421, "zeta": -66.764, "epsilon_zeta": -92.657, "bb_type": "BI", "chi": -137.919, "glyco_bond": "anti", "C5prime_xyz": [ -1.066, 8.552, -0.702 ], "P_xyz": [ 1.527, 8.441, -1.110 ], "form": ".", "ssZp": 3.659, "Dp": 4.496, "splay_angle": 19.537, "splay_distance": 3.166, "splay_ratio": 0.173, "d22": null, "d64": null, "eta": 161.995, "theta": -139.023, "eta_prime": -170.699, "theta_prime": -142.678, "eta_base": -94.166, "theta_base": -105.382, "v0": 6.516, "v1": -25.126, "v2": 33.138, "v3": -30.206, "v4": 15.033, "amplitude": 33.431, "phase_angle": 7.594, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.749, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 205.786, 229.524, 230.297 ], "x_axis": [ 0.523, 0.229, -0.821 ], "y_axis": [ 0.829, -0.359, 0.428 ], "z_axis": [ -0.197, -0.905, -0.378 ], "quaternion": [ 0.443, 0.752, 0.352, -0.338 ] } }, { "index": 1394, "index_chain": 1394, "chain_name": "A", "nt_resnum": 1472, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1472", "linked_nts": [ "///A/1471", "///A/1473" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate", "alpha": -71.973, "beta": 164.455, "gamma": 62.559, "delta": 85.969, "epsilon": -98.585, "zeta": -49.162, "epsilon_zeta": -49.423, "bb_type": "--", "chi": -143.058, "glyco_bond": "anti", "C5prime_xyz": [ -1.160, 8.663, -0.490 ], "P_xyz": [ 1.345, 8.619, -1.290 ], "form": ".", "ssZp": 3.166, "Dp": 4.717, "splay_angle": 21.638, "splay_distance": 3.660, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": 179.312, "theta": -42.109, "eta_prime": -166.925, "theta_prime": -68.233, "eta_base": -117.659, "theta_base": -111.197, "v0": 5.217, "v1": -25.227, "v2": 34.522, "v3": -32.425, "v4": 17.263, "amplitude": 35.084, "phase_angle": 10.267, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.698, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 206.413, 227.165, 228.280 ], "x_axis": [ 0.901, -0.025, -0.434 ], "y_axis": [ 0.321, -0.635, 0.702 ], "z_axis": [ -0.294, -0.772, -0.564 ], "quaternion": [ 0.419, 0.880, 0.084, -0.207 ] } }, { "index": 1395, "index_chain": 1395, "chain_name": "A", "nt_resnum": 1473, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1473", "linked_nts": [ "///A/1472", "///A/1474" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,cap-donor", "alpha": -169.892, "beta": -145.179, "gamma": 56.570, "delta": 147.409, "epsilon": -71.732, "zeta": 93.847, "epsilon_zeta": 194.421, "bb_type": "--", "chi": -119.117, "glyco_bond": "anti", "C5prime_xyz": [ -1.853, 8.456, -1.245 ], "P_xyz": [ 0.203, 9.515, -0.022 ], "form": ".", "ssZp": 0.248, "Dp": 0.414, "splay_angle": 37.167, "splay_distance": 6.090, "splay_ratio": 0.329, "d22": null, "d64": null, "eta": 87.683, "theta": 113.947, "eta_prime": 140.811, "theta_prime": 90.378, "eta_base": 125.866, "theta_base": 55.157, "v0": -20.555, "v1": 34.728, "v2": -34.792, "v3": 23.832, "v4": -2.240, "amplitude": 36.063, "phase_angle": 164.741, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 207.228, 224.446, 225.971 ], "x_axis": [ -0.901, 0.360, 0.242 ], "y_axis": [ -0.017, -0.587, 0.810 ], "z_axis": [ 0.433, 0.725, 0.535 ], "quaternion": [ 0.108, 0.194, 0.441, 0.869 ] } }, { "index": 1396, "index_chain": 1396, "chain_name": "A", "nt_resnum": 1474, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1474", "linked_nts": [ "///A/1473", "///A/1475" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-acceptor,splayed-apart", "alpha": -172.294, "beta": 131.968, "gamma": 116.194, "delta": 145.508, "epsilon": -97.802, "zeta": -77.928, "epsilon_zeta": -19.874, "bb_type": "--", "chi": -97.065, "glyco_bond": "anti", "C5prime_xyz": [ -2.311, 7.985, -2.255 ], "P_xyz": [ -0.897, 7.186, -4.322 ], "form": ".", "ssZp": 0.734, "Dp": 1.011, "splay_angle": 140.205, "splay_distance": 18.473, "splay_ratio": 0.940, "d22": null, "d64": null, "eta": -165.141, "theta": -105.836, "eta_prime": -178.140, "theta_prime": -106.239, "eta_base": 144.254, "theta_base": -64.709, "v0": -21.864, "v1": 35.268, "v2": -34.444, "v3": 22.677, "v4": -0.742, "amplitude": 36.144, "phase_angle": 162.358, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 205.106, 218.905, 227.345 ], "x_axis": [ 0.266, 0.845, -0.463 ], "y_axis": [ 0.948, -0.318, -0.036 ], "z_axis": [ -0.178, -0.430, -0.885 ], "quaternion": [ 0.125, 0.786, 0.571, -0.204 ] } }, { "index": 1397, "index_chain": 1397, "chain_name": "A", "nt_resnum": 1475, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1475", "linked_nts": [ "///A/1474", "///A/1476" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -68.098, "beta": -161.621, "gamma": 71.307, "delta": 81.746, "epsilon": -132.413, "zeta": -82.776, "epsilon_zeta": -49.637, "bb_type": "BI", "chi": 178.197, "glyco_bond": "anti", "C5prime_xyz": [ -1.649, 8.566, 1.697 ], "P_xyz": [ 0.678, 8.826, 2.882 ], "form": "A", "ssZp": 4.519, "Dp": 4.543, "splay_angle": 23.323, "splay_distance": 3.660, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": -170.492, "theta": -141.794, "eta_prime": -134.650, "theta_prime": -137.873, "eta_base": -129.958, "theta_base": -103.493, "v0": -3.462, "v1": -18.684, "v2": 32.354, "v3": -35.240, "v4": 24.467, "amplitude": 35.435, "phase_angle": 24.073, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.462, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 220.444, 208.618, 226.931 ], "x_axis": [ 0.275, 0.655, 0.704 ], "y_axis": [ -0.898, 0.436, -0.055 ], "z_axis": [ -0.343, -0.617, 0.708 ], "quaternion": [ 0.778, 0.181, -0.336, 0.500 ] } }, { "index": 1398, "index_chain": 1398, "chain_name": "A", "nt_resnum": 1476, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1476", "linked_nts": [ "///A/1475", "///A/1477" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -69.059, "beta": 165.677, "gamma": 56.555, "delta": 82.413, "epsilon": -154.981, "zeta": -74.558, "epsilon_zeta": -80.423, "bb_type": "BI", "chi": -167.458, "glyco_bond": "anti", "C5prime_xyz": [ -1.337, 8.701, 0.968 ], "P_xyz": [ 1.250, 8.974, 1.225 ], "form": "A", "ssZp": 4.480, "Dp": 4.536, "splay_angle": 22.811, "splay_distance": 3.558, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 160.078, "theta": -148.890, "eta_prime": 176.633, "theta_prime": -150.117, "eta_base": -134.382, "theta_base": -128.001, "v0": 0.907, "v1": -22.657, "v2": 34.530, "v3": -34.952, "v4": 21.493, "amplitude": 36.145, "phase_angle": 17.192, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.784, "filter_rmsd": 0.063, "frame": { "rmsd": 0.004, "origin": [ 220.535, 206.427, 229.862 ], "x_axis": [ -0.336, 0.820, 0.464 ], "y_axis": [ -0.868, -0.078, -0.491 ], "z_axis": [ -0.366, -0.567, 0.738 ], "quaternion": [ 0.575, 0.033, -0.361, 0.733 ] } }, { "index": 1399, "index_chain": 1399, "chain_name": "A", "nt_resnum": 1477, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1477", "linked_nts": [ "///A/1476", "///A/1478" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,phosphate", "alpha": -65.381, "beta": 169.351, "gamma": 59.007, "delta": 84.043, "epsilon": -153.350, "zeta": -70.351, "epsilon_zeta": -82.998, "bb_type": "BI", "chi": -170.542, "glyco_bond": "anti", "C5prime_xyz": [ -1.376, 8.602, 1.155 ], "P_xyz": [ 1.175, 8.869, 1.654 ], "form": "A", "ssZp": 4.403, "Dp": 4.475, "splay_angle": 21.550, "splay_distance": 3.409, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 171.222, "theta": -142.695, "eta_prime": -175.139, "theta_prime": -143.391, "eta_base": -137.495, "theta_base": -114.798, "v0": 0.068, "v1": -21.047, "v2": 32.771, "v3": -33.657, "v4": 21.226, "amplitude": 34.559, "phase_angle": 18.511, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.910, "filter_rmsd": 0.043, "frame": { "rmsd": 0.014, "origin": [ 220.619, 204.762, 233.005 ], "x_axis": [ -0.701, 0.707, 0.091 ], "y_axis": [ -0.560, -0.467, -0.685 ], "z_axis": [ -0.442, -0.531, 0.723 ], "quaternion": [ 0.373, -0.103, -0.357, 0.850 ] } }, { "index": 1400, "index_chain": 1400, "chain_name": "A", "nt_resnum": 1478, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1478", "linked_nts": [ "///A/1477", "///A/1479" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -64.031, "beta": 177.801, "gamma": 47.761, "delta": 83.204, "epsilon": -154.962, "zeta": -82.995, "epsilon_zeta": -71.967, "bb_type": "BI", "chi": -159.820, "glyco_bond": "anti", "C5prime_xyz": [ -1.110, 8.782, 0.558 ], "P_xyz": [ 1.422, 9.067, 1.194 ], "form": "A", "ssZp": 4.312, "Dp": 4.496, "splay_angle": 23.131, "splay_distance": 3.705, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 167.616, "theta": -157.549, "eta_prime": -178.268, "theta_prime": -156.469, "eta_base": -134.153, "theta_base": -147.246, "v0": 0.870, "v1": -21.977, "v2": 33.604, "v3": -34.001, "v4": 20.932, "amplitude": 35.184, "phase_angle": 17.236, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.915, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 219.646, 204.156, 236.216 ], "x_axis": [ -0.880, 0.298, -0.370 ], "y_axis": [ -0.029, -0.811, -0.584 ], "z_axis": [ -0.474, -0.504, 0.722 ], "quaternion": [ 0.088, -0.228, -0.294, 0.924 ] } }, { "index": 1401, "index_chain": 1401, "chain_name": "A", "nt_resnum": 1479, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1479", "linked_nts": [ "///A/1478", "///A/1480" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -59.580, "beta": 158.939, "gamma": 62.181, "delta": 84.447, "epsilon": -151.612, "zeta": -35.110, "epsilon_zeta": -116.502, "bb_type": "BI", "chi": -164.581, "glyco_bond": "anti", "C5prime_xyz": [ -1.640, 8.786, 0.772 ], "P_xyz": [ 0.932, 9.246, 0.827 ], "form": ".", "ssZp": 4.289, "Dp": 4.408, "splay_angle": 20.451, "splay_distance": 3.199, "splay_ratio": 0.179, "d22": null, "d64": null, "eta": 173.741, "theta": -133.494, "eta_prime": -174.060, "theta_prime": -155.782, "eta_base": -154.479, "theta_base": -118.012, "v0": -2.849, "v1": -18.204, "v2": 30.970, "v3": -33.523, "v4": 22.980, "amplitude": 33.733, "phase_angle": 23.350, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.738, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 219.284, 203.563, 239.855 ], "x_axis": [ -0.848, 0.040, -0.528 ], "y_axis": [ 0.217, -0.883, -0.416 ], "z_axis": [ -0.483, -0.467, 0.741 ], "quaternion": [ -0.048, -0.271, -0.237, 0.932 ] } }, { "index": 1402, "index_chain": 1402, "chain_name": "A", "nt_resnum": 1480, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1480", "linked_nts": [ "///A/1479", "///A/1481" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -125.159, "beta": 88.405, "gamma": -179.264, "delta": 81.365, "epsilon": -126.278, "zeta": -61.739, "epsilon_zeta": -64.540, "bb_type": "--", "chi": -21.647, "glyco_bond": "--", "C5prime_xyz": [ -4.897, 4.374, -2.441 ], "P_xyz": [ -7.412, 4.193, -1.748 ], "form": ".", "ssZp": -4.319, "Dp": 4.581, "splay_angle": 24.303, "splay_distance": 4.179, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": -162.524, "theta": -151.461, "eta_prime": -172.902, "theta_prime": -142.312, "eta_base": -121.738, "theta_base": -145.543, "v0": -3.320, "v1": -19.037, "v2": 32.827, "v3": -35.687, "v4": 24.613, "amplitude": 35.881, "phase_angle": 23.811, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.057, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 217.400, 202.495, 242.209 ], "x_axis": [ -0.248, 0.840, 0.482 ], "y_axis": [ 0.848, -0.052, 0.527 ], "z_axis": [ 0.468, 0.540, -0.700 ], "quaternion": [ -0.005, 0.613, 0.688, 0.387 ] } }, { "index": 1403, "index_chain": 1403, "chain_name": "A", "nt_resnum": 1481, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1481", "linked_nts": [ "///A/1480", "///A/1482" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 139.109, "beta": -158.558, "gamma": 175.739, "delta": 84.221, "epsilon": -133.954, "zeta": -80.988, "epsilon_zeta": -52.965, "bb_type": "BI", "chi": 178.459, "glyco_bond": "anti", "C5prime_xyz": [ -1.453, 8.439, 1.785 ], "P_xyz": [ 0.455, 10.086, 1.075 ], "form": "A", "ssZp": 4.447, "Dp": 4.539, "splay_angle": 22.700, "splay_distance": 3.636, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 140.088, "theta": -162.766, "eta_prime": 174.107, "theta_prime": -158.034, "eta_base": -170.490, "theta_base": -129.608, "v0": 0.700, "v1": -21.475, "v2": 32.901, "v3": -33.434, "v4": 20.649, "amplitude": 34.496, "phase_angle": 17.490, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.286, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 214.995, 203.446, 245.492 ], "x_axis": [ -0.226, -0.604, -0.764 ], "y_axis": [ 0.820, -0.542, 0.185 ], "z_axis": [ -0.526, -0.585, 0.618 ], "quaternion": [ -0.461, -0.418, -0.129, 0.772 ] } }, { "index": 1404, "index_chain": 1404, "chain_name": "A", "nt_resnum": 1482, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1482", "linked_nts": [ "///A/1481", "///A/1483" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -49.672, "beta": 170.771, "gamma": 35.432, "delta": 82.283, "epsilon": -147.638, "zeta": -73.229, "epsilon_zeta": -74.409, "bb_type": "BI", "chi": -162.328, "glyco_bond": "anti", "C5prime_xyz": [ -1.530, 8.734, 0.679 ], "P_xyz": [ 0.896, 9.236, 1.513 ], "form": "A", "ssZp": 4.395, "Dp": 4.568, "splay_angle": 24.546, "splay_distance": 3.960, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 163.164, "theta": -144.498, "eta_prime": 177.580, "theta_prime": -141.572, "eta_base": -142.842, "theta_base": -113.976, "v0": 0.374, "v1": -22.234, "v2": 34.410, "v3": -35.177, "v4": 21.913, "amplitude": 36.188, "phase_angle": 18.036, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.389, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 211.865, 202.302, 246.946 ], "x_axis": [ 0.307, -0.761, -0.572 ], "y_axis": [ 0.818, -0.097, 0.567 ], "z_axis": [ -0.487, -0.642, 0.592 ], "quaternion": [ 0.671, 0.450, 0.032, -0.588 ] } }, { "index": 1405, "index_chain": 1405, "chain_name": "A", "nt_resnum": 1483, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1483", "linked_nts": [ "///A/1482", "///A/1484" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -61.495, "beta": 163.536, "gamma": 60.093, "delta": 77.562, "epsilon": -145.528, "zeta": -81.012, "epsilon_zeta": -64.516, "bb_type": "BI", "chi": -166.976, "glyco_bond": "anti", "C5prime_xyz": [ -1.792, 8.711, 0.888 ], "P_xyz": [ 0.711, 9.428, 0.886 ], "form": "A", "ssZp": 4.539, "Dp": 4.638, "splay_angle": 25.063, "splay_distance": 3.871, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 168.745, "theta": -153.070, "eta_prime": -175.366, "theta_prime": -152.988, "eta_base": -133.033, "theta_base": -122.076, "v0": -0.813, "v1": -23.400, "v2": 37.337, "v3": -38.854, "v4": 24.989, "amplitude": 39.670, "phase_angle": 19.749, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.875, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 209.360, 199.339, 247.736 ], "x_axis": [ 0.692, -0.690, -0.211 ], "y_axis": [ 0.548, 0.312, 0.776 ], "z_axis": [ -0.470, -0.653, 0.594 ], "quaternion": [ 0.806, 0.443, -0.080, -0.384 ] } }, { "index": 1406, "index_chain": 1406, "chain_name": "A", "nt_resnum": 1484, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1484", "linked_nts": [ "///A/1483", "///A/1485" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -64.701, "beta": 154.631, "gamma": 69.175, "delta": 79.901, "epsilon": -157.846, "zeta": -77.090, "epsilon_zeta": -80.756, "bb_type": "BI", "chi": -177.679, "glyco_bond": "anti", "C5prime_xyz": [ -1.471, 8.474, 1.529 ], "P_xyz": [ 1.102, 8.876, 1.380 ], "form": ".", "ssZp": 4.568, "Dp": 4.587, "splay_angle": 24.770, "splay_distance": 3.612, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": 167.019, "theta": -155.438, "eta_prime": -176.112, "theta_prime": -161.108, "eta_base": -126.647, "theta_base": -111.907, "v0": 2.286, "v1": -25.217, "v2": 37.310, "v3": -36.951, "v4": 21.889, "amplitude": 38.674, "phase_angle": 15.264, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.513, "filter_rmsd": 0.105, "frame": { "rmsd": 0.006, "origin": [ 207.698, 195.971, 248.673 ], "x_axis": [ 0.892, -0.379, 0.248 ], "y_axis": [ 0.081, 0.672, 0.736 ], "z_axis": [ -0.445, -0.637, 0.630 ], "quaternion": [ 0.894, 0.384, -0.194, -0.129 ] } }, { "index": 1407, "index_chain": 1407, "chain_name": "A", "nt_resnum": 1485, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1485", "linked_nts": [ "///A/1484", "///A/1486" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor", "alpha": -53.834, "beta": -177.305, "gamma": 56.790, "delta": 74.769, "epsilon": -150.100, "zeta": -59.231, "epsilon_zeta": -90.869, "bb_type": "BI", "chi": 15.079, "glyco_bond": "syn", "C5prime_xyz": [ -5.740, 4.071, -0.781 ], "P_xyz": [ -6.295, 1.604, -1.422 ], "form": ".", "ssZp": -4.452, "Dp": 4.476, "splay_angle": 26.511, "splay_distance": 4.444, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": -171.382, "theta": -104.762, "eta_prime": -168.524, "theta_prime": -100.771, "eta_base": -115.366, "theta_base": -105.323, "v0": -8.175, "v1": -16.958, "v2": 34.166, "v3": -39.925, "v4": 30.340, "amplitude": 39.578, "phase_angle": 30.314, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.774, "filter_rmsd": 0.040, "frame": { "rmsd": 0.017, "origin": [ 206.092, 194.002, 251.241 ], "x_axis": [ 0.175, -0.781, -0.600 ], "y_axis": [ -0.821, 0.221, -0.526 ], "z_axis": [ 0.543, 0.585, -0.602 ], "quaternion": [ 0.445, -0.624, 0.642, 0.023 ] } }, { "index": 1408, "index_chain": 1408, "chain_name": "A", "nt_resnum": 1486, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1486", "linked_nts": [ "///A/1485", "///A/1487" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-donor", "alpha": 135.439, "beta": -140.821, "gamma": -174.791, "delta": 81.861, "epsilon": -135.130, "zeta": -85.208, "epsilon_zeta": -49.922, "bb_type": "BI", "chi": 168.515, "glyco_bond": "anti", "C5prime_xyz": [ -1.492, 8.067, 2.283 ], "P_xyz": [ 0.336, 9.790, 1.603 ], "form": "A", "ssZp": 4.609, "Dp": 4.694, "splay_angle": 25.363, "splay_distance": 4.091, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": 163.935, "theta": -134.317, "eta_prime": -158.407, "theta_prime": -141.223, "eta_base": -131.003, "theta_base": -99.478, "v0": 4.274, "v1": -25.718, "v2": 36.303, "v3": -34.845, "v4": 19.267, "amplitude": 37.140, "phase_angle": 12.182, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.516, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 206.222, 190.364, 253.790 ], "x_axis": [ 0.312, 0.567, 0.762 ], "y_axis": [ -0.747, 0.643, -0.173 ], "z_axis": [ -0.588, -0.515, 0.624 ], "quaternion": [ 0.803, 0.107, -0.420, 0.409 ] } }, { "index": 1409, "index_chain": 1409, "chain_name": "A", "nt_resnum": 1487, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1487", "linked_nts": [ "///A/1486", "///A/1488" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 166.145, "beta": -150.687, "gamma": 156.731, "delta": 82.597, "epsilon": -134.061, "zeta": -103.222, "epsilon_zeta": -30.839, "bb_type": "--", "chi": 171.197, "glyco_bond": "anti", "C5prime_xyz": [ -1.559, 8.186, 2.139 ], "P_xyz": [ 0.710, 9.362, 1.596 ], "form": "A", "ssZp": 4.578, "Dp": 4.657, "splay_angle": 24.589, "splay_distance": 3.946, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 148.617, "theta": -137.260, "eta_prime": 174.790, "theta_prime": -147.862, "eta_base": -119.338, "theta_base": -129.553, "v0": 2.750, "v1": -23.970, "v2": 34.962, "v3": -34.364, "v4": 19.950, "amplitude": 36.093, "phase_angle": 14.383, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.148, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 206.112, 189.323, 257.744 ], "x_axis": [ -0.289, 0.900, 0.325 ], "y_axis": [ -0.733, 0.010, -0.680 ], "z_axis": [ -0.615, -0.435, 0.657 ], "quaternion": [ 0.587, -0.104, -0.401, 0.696 ] } }, { "index": 1410, "index_chain": 1410, "chain_name": "A", "nt_resnum": 1488, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1488", "linked_nts": [ "///A/1487", "///A/1489" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 163.139, "beta": -148.536, "gamma": 156.289, "delta": 80.786, "epsilon": -152.261, "zeta": -84.968, "epsilon_zeta": -67.294, "bb_type": "BI", "chi": 175.933, "glyco_bond": "anti", "C5prime_xyz": [ -1.344, 8.224, 1.889 ], "P_xyz": [ 0.767, 9.403, 0.888 ], "form": ".", "ssZp": 4.683, "Dp": 4.694, "splay_angle": 32.909, "splay_distance": 5.669, "splay_ratio": 0.309, "d22": null, "d64": null, "eta": 143.072, "theta": -148.412, "eta_prime": 165.710, "theta_prime": -159.709, "eta_base": -152.763, "theta_base": -166.873, "v0": 6.576, "v1": -28.424, "v2": 38.283, "v3": -35.492, "v4": 18.243, "amplitude": 38.764, "phase_angle": 9.035, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.040, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 205.845, 188.258, 261.534 ], "x_axis": [ -0.617, 0.777, -0.125 ], "y_axis": [ -0.497, -0.508, -0.704 ], "z_axis": [ -0.610, -0.372, 0.700 ], "quaternion": [ 0.379, -0.219, -0.320, 0.840 ] } }, { "index": 1411, "index_chain": 1411, "chain_name": "A", "nt_resnum": 1489, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1489", "linked_nts": [ "///A/1488", "///A/1490" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -175.013, "beta": -175.996, "gamma": 169.549, "delta": 84.263, "epsilon": -151.969, "zeta": -50.079, "epsilon_zeta": -101.890, "bb_type": "BI", "chi": -179.034, "glyco_bond": "anti", "C5prime_xyz": [ -1.515, 8.446, 1.612 ], "P_xyz": [ 0.131, 10.327, 0.795 ], "form": ".", "ssZp": 4.441, "Dp": 4.505, "splay_angle": 26.931, "splay_distance": 4.046, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": -178.829, "theta": -149.198, "eta_prime": -174.116, "theta_prime": -142.590, "eta_base": -170.511, "theta_base": -79.409, "v0": 0.777, "v1": -21.309, "v2": 32.437, "v3": -32.899, "v4": 20.322, "amplitude": 33.978, "phase_angle": 17.321, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.231, "filter_rmsd": 0.104, "frame": { "rmsd": 0.007, "origin": [ 207.420, 188.150, 266.979 ], "x_axis": [ -0.675, 0.680, -0.285 ], "y_axis": [ -0.431, -0.677, -0.596 ], "z_axis": [ -0.599, -0.280, 0.750 ], "quaternion": [ 0.315, -0.251, -0.249, 0.881 ] } }, { "index": 1412, "index_chain": 1412, "chain_name": "A", "nt_resnum": 1490, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1490", "linked_nts": [ "///A/1489", "///A/1491" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop", "alpha": -93.443, "beta": -159.277, "gamma": 53.350, "delta": 88.103, "epsilon": -166.633, "zeta": -72.646, "epsilon_zeta": -93.987, "bb_type": "BI", "chi": -139.227, "glyco_bond": "anti", "C5prime_xyz": [ -0.878, 8.479, -0.603 ], "P_xyz": [ 1.710, 8.543, -0.162 ], "form": ".", "ssZp": 3.723, "Dp": 4.441, "splay_angle": 29.424, "splay_distance": 4.637, "splay_ratio": 0.276, "d22": null, "d64": null, "eta": 156.892, "theta": -122.667, "eta_prime": -178.225, "theta_prime": -137.938, "eta_base": -100.871, "theta_base": -82.750, "v0": 7.705, "v1": -25.734, "v2": 33.107, "v3": -29.566, "v4": 13.883, "amplitude": 33.266, "phase_angle": 5.611, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.234, "filter_rmsd": 0.042, "frame": { "rmsd": 0.012, "origin": [ 203.499, 188.507, 267.911 ], "x_axis": [ -0.675, -0.301, -0.673 ], "y_axis": [ 0.286, -0.948, 0.137 ], "z_axis": [ -0.680, -0.100, 0.727 ], "quaternion": [ -0.160, -0.370, 0.010, 0.915 ] } }, { "index": 1413, "index_chain": 1413, "chain_name": "A", "nt_resnum": 1491, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1491", "linked_nts": [ "///A/1490", "///A/1492" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop", "alpha": 138.655, "beta": -165.042, "gamma": -172.789, "delta": 82.371, "epsilon": -112.818, "zeta": -63.196, "epsilon_zeta": -49.621, "bb_type": "--", "chi": 34.228, "glyco_bond": "syn", "C5prime_xyz": [ -5.498, 3.510, 0.344 ], "P_xyz": [ -6.646, 2.417, 2.431 ], "form": ".", "ssZp": -3.476, "Dp": 4.582, "splay_angle": 31.335, "splay_distance": 4.837, "splay_ratio": 0.280, "d22": null, "d64": null, "eta": 163.586, "theta": -138.777, "eta_prime": 171.359, "theta_prime": -125.861, "eta_base": -109.673, "theta_base": -127.369, "v0": -2.067, "v1": -20.061, "v2": 33.208, "v3": -35.379, "v4": 23.612, "amplitude": 35.780, "phase_angle": 21.857, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.669, "filter_rmsd": 0.042, "frame": { "rmsd": 0.014, "origin": [ 200.378, 185.402, 269.368 ], "x_axis": [ -0.190, 0.773, -0.605 ], "y_axis": [ 0.580, 0.585, 0.566 ], "z_axis": [ 0.792, -0.243, -0.560 ], "quaternion": [ 0.457, 0.443, 0.764, 0.106 ] } }, { "index": 1414, "index_chain": 1414, "chain_name": "A", "nt_resnum": 1492, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1492", "linked_nts": [ "///A/1491", "///A/1493" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,ribose-zipper", "alpha": -56.546, "beta": 168.957, "gamma": 56.239, "delta": 79.885, "epsilon": -149.792, "zeta": -69.555, "epsilon_zeta": -80.237, "bb_type": "BI", "chi": -170.239, "glyco_bond": "anti", "C5prime_xyz": [ -1.657, 8.640, 1.089 ], "P_xyz": [ 0.887, 9.157, 1.362 ], "form": "A", "ssZp": 4.594, "Dp": 4.638, "splay_angle": 22.432, "splay_distance": 3.754, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 162.671, "theta": -142.602, "eta_prime": -164.206, "theta_prime": -143.246, "eta_base": -147.016, "theta_base": -120.355, "v0": 1.347, "v1": -24.467, "v2": 36.994, "v3": -37.210, "v4": 22.615, "amplitude": 38.609, "phase_angle": 16.632, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.359, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 195.653, 184.426, 269.709 ], "x_axis": [ 0.429, -0.876, -0.221 ], "y_axis": [ 0.653, 0.132, 0.746 ], "z_axis": [ -0.624, -0.464, 0.629 ], "quaternion": [ 0.740, 0.409, -0.136, -0.517 ] } }, { "index": 1415, "index_chain": 1415, "chain_name": "A", "nt_resnum": 1493, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1493", "linked_nts": [ "///A/1492", "///A/1494" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper", "alpha": -58.021, "beta": 174.251, "gamma": 52.112, "delta": 76.808, "epsilon": -150.409, "zeta": -111.390, "epsilon_zeta": -39.019, "bb_type": "BI", "chi": -161.280, "glyco_bond": "anti", "C5prime_xyz": [ -1.644, 8.888, 0.559 ], "P_xyz": [ 0.810, 9.694, 0.877 ], "form": "A", "ssZp": 4.409, "Dp": 4.575, "splay_angle": 20.513, "splay_distance": 3.263, "splay_ratio": 0.179, "d22": null, "d64": null, "eta": 172.240, "theta": -144.972, "eta_prime": -174.916, "theta_prime": -148.205, "eta_base": -136.757, "theta_base": -120.050, "v0": -2.991, "v1": -21.307, "v2": 36.161, "v3": -38.913, "v4": 26.404, "amplitude": 39.253, "phase_angle": 22.895, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.916, "filter_rmsd": 0.059, "frame": { "rmsd": 0.008, "origin": [ 192.975, 181.795, 269.726 ], "x_axis": [ 0.720, -0.666, 0.197 ], "y_axis": [ 0.274, 0.532, 0.801 ], "z_axis": [ -0.638, -0.523, 0.565 ], "quaternion": [ 0.839, 0.394, -0.249, -0.280 ] } }, { "index": 1416, "index_chain": 1416, "chain_name": "A", "nt_resnum": 1494, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1494", "linked_nts": [ "///A/1493", "///A/1495" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 154.156, "beta": -127.570, "gamma": 156.892, "delta": 82.102, "epsilon": -100.414, "zeta": -97.202, "epsilon_zeta": -3.213, "bb_type": "--", "chi": 174.104, "glyco_bond": "anti", "C5prime_xyz": [ -1.810, 8.352, 1.941 ], "P_xyz": [ 0.508, 9.191, 1.083 ], "form": ".", "ssZp": 4.533, "Dp": 4.597, "splay_angle": 27.335, "splay_distance": 5.242, "splay_ratio": 0.258, "d22": null, "d64": null, "eta": 162.081, "theta": -122.298, "eta_prime": 173.115, "theta_prime": -140.153, "eta_base": -148.274, "theta_base": -144.572, "v0": -0.130, "v1": -21.918, "v2": 34.385, "v3": -35.428, "v4": 22.420, "amplitude": 36.326, "phase_angle": 18.817, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 191.483, 179.082, 270.755 ], "x_axis": [ 0.950, -0.032, 0.310 ], "y_axis": [ -0.180, 0.757, 0.629 ], "z_axis": [ -0.255, -0.653, 0.713 ], "quaternion": [ 0.925, 0.346, -0.153, 0.040 ] } }, { "index": 1417, "index_chain": 1417, "chain_name": "A", "nt_resnum": 1495, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1495", "linked_nts": [ "///A/1494", "///A/1496" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 64.992, "beta": -120.110, "gamma": -105.140, "delta": 83.582, "epsilon": -106.962, "zeta": -105.279, "epsilon_zeta": -1.682, "bb_type": "--", "chi": 171.443, "glyco_bond": "anti", "C5prime_xyz": [ -1.742, 8.355, 2.034 ], "P_xyz": [ -1.752, 10.958, 1.807 ], "form": ".", "ssZp": 4.319, "Dp": 4.461, "splay_angle": 21.882, "splay_distance": 3.782, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 179.605, "theta": -160.301, "eta_prime": -176.907, "theta_prime": -151.604, "eta_base": -163.447, "theta_base": -97.012, "v0": -2.112, "v1": -19.267, "v2": 31.980, "v3": -34.150, "v4": 22.859, "amplitude": 34.503, "phase_angle": 22.044, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.011, "origin": [ 190.961, 173.867, 270.854 ], "x_axis": [ 0.927, 0.198, 0.318 ], "y_axis": [ -0.337, 0.810, 0.480 ], "z_axis": [ -0.163, -0.552, 0.817 ], "quaternion": [ 0.943, 0.274, -0.128, 0.142 ] } }, { "index": 1418, "index_chain": 1418, "chain_name": "A", "nt_resnum": 1496, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1496", "linked_nts": [ "///A/1495", "///A/1497" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop,kissing-loop", "alpha": 110.469, "beta": -111.935, "gamma": -164.289, "delta": 83.740, "epsilon": -177.009, "zeta": 55.117, "epsilon_zeta": 127.874, "bb_type": "--", "chi": 168.968, "glyco_bond": "anti", "C5prime_xyz": [ -2.309, 8.426, 1.998 ], "P_xyz": [ -0.622, 10.078, 0.867 ], "form": ".", "ssZp": 3.281, "Dp": 3.956, "splay_angle": 18.559, "splay_distance": 2.905, "splay_ratio": 0.163, "d22": null, "d64": null, "eta": 167.512, "theta": -91.618, "eta_prime": -166.361, "theta_prime": -127.398, "eta_base": -98.135, "theta_base": -103.374, "v0": -8.984, "v1": -12.338, "v2": 27.479, "v3": -33.491, "v4": 26.831, "amplitude": 33.132, "phase_angle": 33.965, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 192.930, 172.395, 273.728 ], "x_axis": [ 0.503, 0.733, 0.457 ], "y_axis": [ -0.862, 0.462, 0.207 ], "z_axis": [ -0.060, -0.499, 0.865 ], "quaternion": [ 0.841, 0.210, -0.154, 0.474 ] } }, { "index": 1419, "index_chain": 1419, "chain_name": "A", "nt_resnum": 1497, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1497", "linked_nts": [ "///A/1496", "///A/1498" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop,phosphate", "alpha": 164.779, "beta": 69.149, "gamma": 150.795, "delta": 151.065, "epsilon": -94.617, "zeta": 99.128, "epsilon_zeta": 166.255, "bb_type": "--", "chi": -136.244, "glyco_bond": "anti", "C5prime_xyz": [ -1.422, 8.551, -0.212 ], "P_xyz": [ -0.761, 8.674, -2.734 ], "form": ".", "ssZp": 0.796, "Dp": 0.995, "splay_angle": 29.726, "splay_distance": 6.102, "splay_ratio": 0.388, "d22": null, "d64": null, "eta": -175.547, "theta": 34.006, "eta_prime": -164.949, "theta_prime": 73.618, "eta_base": -127.380, "theta_base": 133.515, "v0": -14.077, "v1": 30.675, "v2": -34.586, "v3": 27.370, "v4": -8.540, "amplitude": 34.705, "phase_angle": 175.251, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 193.788, 171.419, 276.326 ], "x_axis": [ -0.207, 0.912, 0.355 ], "y_axis": [ -0.943, -0.283, 0.176 ], "z_axis": [ 0.261, -0.298, 0.918 ], "quaternion": [ 0.598, 0.198, -0.039, 0.776 ] } }, { "index": 1420, "index_chain": 1420, "chain_name": "A", "nt_resnum": 1498, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1498", "linked_nts": [ "///A/1497", "///A/1499" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-pair-contact,hairpin-loop,kissing-loop", "alpha": 137.438, "beta": -153.359, "gamma": 147.745, "delta": 144.320, "epsilon": -83.488, "zeta": -107.676, "epsilon_zeta": 24.188, "bb_type": "--", "chi": 53.087, "glyco_bond": "syn", "C5prime_xyz": [ -5.408, 3.872, 0.893 ], "P_xyz": [ -4.930, 1.510, 1.908 ], "form": ".", "ssZp": -0.579, "Dp": 0.646, "splay_angle": 82.541, "splay_distance": 11.140, "splay_ratio": 0.681, "d22": null, "d64": null, "eta": -146.262, "theta": -69.985, "eta_prime": -158.965, "theta_prime": -61.327, "eta_base": -127.366, "theta_base": -12.364, "v0": -21.941, "v1": 34.829, "v2": -33.740, "v3": 21.992, "v4": -0.238, "amplitude": 35.557, "phase_angle": 161.602, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.005, "origin": [ 192.079, 165.720, 274.971 ], "x_axis": [ 0.575, 0.718, -0.392 ], "y_axis": [ -0.578, 0.018, -0.816 ], "z_axis": [ -0.579, 0.696, 0.426 ], "quaternion": [ 0.710, -0.532, -0.066, 0.456 ] } }, { "index": 1421, "index_chain": 1421, "chain_name": "A", "nt_resnum": 1499, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1499", "linked_nts": [ "///A/1498", "///A/1500" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-stack,hairpin-loop,kissing-loop,cap-donor,cap-acceptor,phosphate,splayed-apart", "alpha": 27.783, "beta": 101.893, "gamma": 56.006, "delta": 82.350, "epsilon": -164.589, "zeta": -133.102, "epsilon_zeta": -31.487, "bb_type": "--", "chi": -76.807, "glyco_bond": "--", "C5prime_xyz": [ -2.786, 6.630, -3.330 ], "P_xyz": [ -1.307, 4.610, -4.135 ], "form": ".", "ssZp": -0.478, "Dp": 4.510, "splay_angle": 141.533, "splay_distance": 17.780, "splay_ratio": 0.944, "d22": null, "d64": null, "eta": 172.776, "theta": -174.384, "eta_prime": -128.809, "theta_prime": 120.771, "eta_base": -122.558, "theta_base": 49.932, "v0": 2.288, "v1": -23.476, "v2": 34.481, "v3": -34.115, "v4": 20.150, "amplitude": 35.703, "phase_angle": 15.033, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.036, "frame": { "rmsd": 0.004, "origin": [ 182.824, 159.793, 276.787 ], "x_axis": [ -0.997, -0.071, -0.042 ], "y_axis": [ 0.073, -0.521, -0.850 ], "z_axis": [ 0.038, -0.850, 0.525 ], "quaternion": [ -0.041, -0.001, -0.488, 0.872 ] } }, { "index": 1422, "index_chain": 1422, "chain_name": "A", "nt_resnum": 1500, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1500", "linked_nts": [ "///A/1499", "///A/1501" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-stack,hairpin-loop,kissing-loop,splayed-apart", "alpha": 69.012, "beta": -138.592, "gamma": 94.468, "delta": 145.530, "epsilon": -97.056, "zeta": 175.420, "epsilon_zeta": 87.524, "bb_type": "BII", "chi": -126.825, "glyco_bond": "anti", "C5prime_xyz": [ -1.877, 8.610, -0.895 ], "P_xyz": [ 0.595, 8.861, -0.069 ], "form": ".", "ssZp": 0.912, "Dp": 0.944, "splay_angle": 59.872, "splay_distance": 9.905, "splay_ratio": 0.499, "d22": 7.092, "d64": 8.065, "eta": 27.475, "theta": -140.925, "eta_prime": 38.347, "theta_prime": -157.057, "eta_base": 70.269, "theta_base": -125.024, "v0": -22.056, "v1": 35.326, "v2": -34.396, "v3": 22.560, "v4": -0.527, "amplitude": 36.156, "phase_angle": 162.049, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.005, "origin": [ 190.632, 154.894, 261.583 ], "x_axis": [ -0.657, 0.547, -0.519 ], "y_axis": [ -0.621, -0.002, 0.784 ], "z_axis": [ 0.428, 0.837, 0.340 ], "quaternion": [ 0.413, -0.032, 0.573, 0.707 ] } }, { "index": 1423, "index_chain": 1423, "chain_name": "A", "nt_resnum": 1501, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1501", "linked_nts": [ "///A/1500", "///A/1502" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,kissing-loop", "alpha": 8.897, "beta": 135.258, "gamma": -44.012, "delta": 81.359, "epsilon": -162.022, "zeta": -75.895, "epsilon_zeta": -86.126, "bb_type": "BI", "chi": -170.933, "glyco_bond": "anti", "C5prime_xyz": [ -1.248, 8.503, 1.185 ], "P_xyz": [ 0.093, 9.128, 3.331 ], "form": ".", "ssZp": 4.578, "Dp": 4.582, "splay_angle": 23.640, "splay_distance": 3.678, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 158.135, "theta": -141.547, "eta_prime": 155.232, "theta_prime": -134.106, "eta_base": -165.736, "theta_base": -70.349, "v0": 5.049, "v1": -26.930, "v2": 37.457, "v3": -35.557, "v4": 19.227, "amplitude": 38.183, "phase_angle": 11.190, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.006, "origin": [ 197.024, 158.247, 268.367 ], "x_axis": [ -0.667, 0.535, -0.519 ], "y_axis": [ -0.636, -0.771, 0.021 ], "z_axis": [ -0.389, 0.344, 0.855 ], "quaternion": [ 0.323, -0.250, 0.101, 0.907 ] } }, { "index": 1424, "index_chain": 1424, "chain_name": "A", "nt_resnum": 1502, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1502", "linked_nts": [ "///A/1501", "///A/1503" ], "nt_type": "RNA", "dbn": "{", "summary": "pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,kissing-loop", "alpha": 168.980, "beta": -142.722, "gamma": 152.622, "delta": 84.031, "epsilon": -100.291, "zeta": -111.529, "epsilon_zeta": 11.238, "bb_type": "--", "chi": -169.772, "glyco_bond": "anti", "C5prime_xyz": [ -1.012, 8.536, 1.149 ], "P_xyz": [ 1.172, 9.095, -0.189 ], "form": ".", "ssZp": 4.409, "Dp": 4.727, "splay_angle": 30.937, "splay_distance": 4.791, "splay_ratio": 0.272, "d22": null, "d64": null, "eta": 168.617, "theta": -137.308, "eta_prime": -170.549, "theta_prime": -153.508, "eta_base": -98.883, "theta_base": -115.861, "v0": 4.911, "v1": -25.378, "v2": 35.072, "v3": -33.211, "v4": 17.878, "amplitude": 35.717, "phase_angle": 10.907, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.101, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 194.408, 160.771, 268.923 ], "x_axis": [ -0.975, -0.146, -0.167 ], "y_axis": [ 0.015, -0.795, 0.607 ], "z_axis": [ -0.221, 0.589, 0.777 ], "quaternion": [ -0.043, -0.103, 0.318, 0.942 ] } }, { "index": 1425, "index_chain": 1425, "chain_name": "A", "nt_resnum": 1503, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1503", "linked_nts": [ "///A/1502", "///A/1504" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop", "alpha": 63.423, "beta": -103.730, "gamma": -115.997, "delta": 82.830, "epsilon": -106.111, "zeta": -102.296, "epsilon_zeta": -3.815, "bb_type": "--", "chi": 8.824, "glyco_bond": "syn", "C5prime_xyz": [ -5.279, 3.607, -1.171 ], "P_xyz": [ -7.575, 3.387, 0.065 ], "form": ".", "ssZp": -4.446, "Dp": 4.658, "splay_angle": 59.000, "splay_distance": 8.239, "splay_ratio": 0.493, "d22": null, "d64": null, "eta": -171.309, "theta": -159.012, "eta_prime": -174.103, "theta_prime": -150.438, "eta_base": -119.221, "theta_base": -132.207, "v0": 1.724, "v1": -23.296, "v2": 34.727, "v3": -34.747, "v4": 20.857, "amplitude": 36.121, "phase_angle": 15.969, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 192.095, 162.898, 272.540 ], "x_axis": [ -0.085, 0.745, -0.661 ], "y_axis": [ 0.994, 0.112, -0.002 ], "z_axis": [ 0.073, -0.657, -0.750 ], "quaternion": [ 0.263, 0.623, 0.698, -0.236 ] } }, { "index": 1426, "index_chain": 1426, "chain_name": "A", "nt_resnum": 1504, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1504", "linked_nts": [ "///A/1503", "///A/1505" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-pair-contact,hairpin-loop,kissing-loop,cap-donor", "alpha": 126.139, "beta": 151.172, "gamma": -71.950, "delta": 148.473, "epsilon": -60.183, "zeta": 103.059, "epsilon_zeta": 196.758, "bb_type": "--", "chi": 48.750, "glyco_bond": "syn", "C5prime_xyz": [ -5.469, 3.753, 0.610 ], "P_xyz": [ -7.781, 2.818, -0.212 ], "form": ".", "ssZp": 0.106, "Dp": 0.204, "splay_angle": 27.373, "splay_distance": 4.532, "splay_ratio": 0.244, "d22": null, "d64": null, "eta": -120.869, "theta": 95.589, "eta_prime": -107.057, "theta_prime": 75.165, "eta_base": -140.584, "theta_base": 105.323, "v0": -23.306, "v1": 38.072, "v2": -37.353, "v3": 24.938, "v4": -1.255, "amplitude": 39.063, "phase_angle": 162.982, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.036, "frame": { "rmsd": 0.007, "origin": [ 190.919, 167.848, 279.020 ], "x_axis": [ -0.582, 0.792, 0.182 ], "y_axis": [ 0.776, 0.475, 0.415 ], "z_axis": [ 0.242, 0.383, -0.891 ], "quaternion": [ 0.018, 0.457, 0.859, 0.232 ] } }, { "index": 1427, "index_chain": 1427, "chain_name": "A", "nt_resnum": 1505, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1505", "linked_nts": [ "///A/1504", "///A/1506" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop,cap-acceptor,splayed-apart", "alpha": -169.407, "beta": 110.497, "gamma": 106.820, "delta": 83.728, "epsilon": -120.087, "zeta": -97.791, "epsilon_zeta": -22.296, "bb_type": "--", "chi": -132.212, "glyco_bond": "anti", "C5prime_xyz": [ -1.504, 8.551, -1.127 ], "P_xyz": [ -0.835, 7.936, -3.584 ], "form": ".", "ssZp": 2.825, "Dp": 4.701, "splay_angle": 118.739, "splay_distance": 13.511, "splay_ratio": 0.871, "d22": null, "d64": null, "eta": 137.444, "theta": -169.790, "eta_prime": 131.826, "theta_prime": 151.162, "eta_base": 178.614, "theta_base": 70.189, "v0": 2.412, "v1": -23.416, "v2": 34.328, "v3": -33.893, "v4": 19.914, "amplitude": 35.512, "phase_angle": 14.833, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.107, "frame": { "rmsd": 0.007, "origin": [ 193.858, 169.937, 276.274 ], "x_axis": [ -0.238, 0.758, 0.607 ], "y_axis": [ 0.934, 0.006, 0.358 ], "z_axis": [ 0.268, 0.652, -0.709 ], "quaternion": [ -0.121, 0.605, 0.699, 0.361 ] } }, { "index": 1428, "index_chain": 1428, "chain_name": "A", "nt_resnum": 1506, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1506", "linked_nts": [ "///A/1505", "///A/1507" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,non-stack,hairpin-loop,kissing-loop,splayed-apart", "alpha": -17.286, "beta": -132.657, "gamma": 156.425, "delta": 80.571, "epsilon": -155.926, "zeta": 86.445, "epsilon_zeta": 117.630, "bb_type": "--", "chi": 28.716, "glyco_bond": "syn", "C5prime_xyz": [ -5.348, 3.248, -0.079 ], "P_xyz": [ -5.094, 1.544, 1.892 ], "form": ".", "ssZp": -4.240, "Dp": 4.593, "splay_angle": 109.016, "splay_distance": 15.397, "splay_ratio": 0.820, "d22": null, "d64": null, "eta": -7.441, "theta": 45.027, "eta_prime": 10.368, "theta_prime": 20.864, "eta_base": 61.804, "theta_base": -33.425, "v0": 2.925, "v1": -25.244, "v2": 36.769, "v3": -36.082, "v4": 20.887, "amplitude": 37.941, "phase_angle": 14.279, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 206.742, 165.986, 275.319 ], "x_axis": [ 0.848, -0.492, -0.195 ], "y_axis": [ 0.241, 0.687, -0.686 ], "z_axis": [ 0.472, 0.535, 0.701 ], "quaternion": [ 0.899, -0.339, 0.185, -0.204 ] } }, { "index": 1429, "index_chain": 1429, "chain_name": "A", "nt_resnum": 1507, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1507", "linked_nts": [ "///A/1506", "///A/1508" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop,kissing-loop,splayed-apart", "alpha": 35.416, "beta": 111.775, "gamma": -89.553, "delta": 80.484, "epsilon": -157.152, "zeta": -81.056, "epsilon_zeta": -76.095, "bb_type": "BI", "chi": -166.233, "glyco_bond": "anti", "C5prime_xyz": [ -1.663, 8.736, 0.864 ], "P_xyz": [ -2.083, 10.448, 2.802 ], "form": "A", "ssZp": 4.409, "Dp": 4.485, "splay_angle": 21.984, "splay_distance": 3.449, "splay_ratio": 0.192, "d22": 4.786, "d64": 4.583, "eta": 115.555, "theta": 154.521, "eta_prime": 124.489, "theta_prime": 171.833, "eta_base": -174.108, "theta_base": -153.125, "v0": -1.745, "v1": -20.973, "v2": 34.348, "v3": -36.369, "v4": 24.031, "amplitude": 36.861, "phase_angle": 21.280, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 193.217, 173.341, 275.121 ], "x_axis": [ 0.435, 0.625, 0.648 ], "y_axis": [ 0.880, -0.449, -0.158 ], "z_axis": [ 0.192, 0.639, -0.745 ], "quaternion": [ -0.246, 0.811, 0.464, 0.259 ] } }, { "index": 1430, "index_chain": 1430, "chain_name": "A", "nt_resnum": 1508, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1508", "linked_nts": [ "///A/1507", "///A/1509" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -61.585, "beta": 175.052, "gamma": 49.192, "delta": 82.732, "epsilon": -154.795, "zeta": -76.104, "epsilon_zeta": -78.691, "bb_type": "BI", "chi": -160.143, "glyco_bond": "anti", "C5prime_xyz": [ -1.143, 8.742, 0.545 ], "P_xyz": [ 1.421, 9.005, 0.977 ], "form": "A", "ssZp": 4.371, "Dp": 4.549, "splay_angle": 22.339, "splay_distance": 3.570, "splay_ratio": 0.195, "d22": 4.575, "d64": 4.581, "eta": 170.116, "theta": -151.757, "eta_prime": 177.689, "theta_prime": -151.676, "eta_base": -154.461, "theta_base": -137.874, "v0": 1.749, "v1": -23.337, "v2": 34.851, "v3": -34.790, "v4": 20.849, "amplitude": 36.237, "phase_angle": 15.900, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.875, "filter_rmsd": 0.065, "frame": { "rmsd": 0.007, "origin": [ 192.014, 175.666, 272.875 ], "x_axis": [ 0.799, 0.295, 0.524 ], "y_axis": [ 0.568, -0.653, -0.500 ], "z_axis": [ 0.195, 0.697, -0.690 ], "quaternion": [ -0.338, 0.886, 0.243, 0.203 ] } }, { "index": 1431, "index_chain": 1431, "chain_name": "A", "nt_resnum": 1509, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1509", "linked_nts": [ "///A/1508", "///A/1510" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -65.493, "beta": 171.140, "gamma": 56.088, "delta": 80.344, "epsilon": -135.442, "zeta": -84.761, "epsilon_zeta": -50.680, "bb_type": "BI", "chi": -159.650, "glyco_bond": "anti", "C5prime_xyz": [ -1.291, 8.812, 0.492 ], "P_xyz": [ 1.287, 9.237, 0.595 ], "form": "A", "ssZp": 4.331, "Dp": 4.665, "splay_angle": 23.774, "splay_distance": 3.768, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 171.850, "theta": -148.090, "eta_prime": -179.412, "theta_prime": -146.465, "eta_base": -155.427, "theta_base": -121.610, "v0": 0.946, "v1": -23.685, "v2": 36.154, "v3": -36.574, "v4": 22.467, "amplitude": 37.843, "phase_angle": 17.184, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.951, "filter_rmsd": 0.063, "frame": { "rmsd": 0.007, "origin": [ 191.408, 178.808, 271.292 ], "x_axis": [ 0.945, -0.057, 0.321 ], "y_axis": [ 0.206, -0.661, -0.722 ], "z_axis": [ 0.254, 0.748, -0.613 ], "quaternion": [ -0.410, 0.897, 0.041, 0.160 ] } }, { "index": 1432, "index_chain": 1432, "chain_name": "A", "nt_resnum": 1510, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1510", "linked_nts": [ "///A/1509", "///A/1511" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor", "alpha": -71.149, "beta": 163.177, "gamma": 58.521, "delta": 82.991, "epsilon": -152.451, "zeta": -68.060, "epsilon_zeta": -84.391, "bb_type": "BI", "chi": -172.173, "glyco_bond": "anti", "C5prime_xyz": [ -1.561, 8.586, 1.245 ], "P_xyz": [ 1.015, 8.908, 1.569 ], "form": "A", "ssZp": 4.479, "Dp": 4.545, "splay_angle": 21.210, "splay_distance": 3.532, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": 158.854, "theta": -140.742, "eta_prime": 172.453, "theta_prime": -143.309, "eta_base": -148.557, "theta_base": -127.625, "v0": 1.862, "v1": -23.381, "v2": 34.738, "v3": -34.651, "v4": 20.678, "amplitude": 36.087, "phase_angle": 15.717, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.769, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 192.884, 181.968, 269.868 ], "x_axis": [ 0.687, -0.700, 0.196 ], "y_axis": [ -0.335, -0.545, -0.769 ], "z_axis": [ 0.645, 0.463, -0.608 ], "quaternion": [ -0.365, 0.843, -0.307, 0.250 ] } }, { "index": 1433, "index_chain": 1433, "chain_name": "A", "nt_resnum": 1511, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1511", "linked_nts": [ "///A/1510", "///A/1512" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor", "alpha": -64.673, "beta": -174.293, "gamma": 44.800, "delta": 79.446, "epsilon": -153.259, "zeta": -83.466, "epsilon_zeta": -69.793, "bb_type": "BI", "chi": -153.212, "glyco_bond": "anti", "C5prime_xyz": [ -1.438, 8.873, 0.101 ], "P_xyz": [ 0.998, 9.635, 0.644 ], "form": "A", "ssZp": 4.178, "Dp": 4.541, "splay_angle": 20.871, "splay_distance": 3.291, "splay_ratio": 0.182, "d22": null, "d64": null, "eta": 168.259, "theta": -161.007, "eta_prime": 178.912, "theta_prime": -156.257, "eta_base": -150.641, "theta_base": -125.607, "v0": -1.094, "v1": -22.074, "v2": 35.582, "v3": -37.169, "v4": 24.153, "amplitude": 37.920, "phase_angle": 20.223, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.822, "filter_rmsd": 0.059, "frame": { "rmsd": 0.009, "origin": [ 195.608, 184.213, 269.972 ], "x_axis": [ 0.396, -0.892, -0.218 ], "y_axis": [ -0.562, -0.048, -0.826 ], "z_axis": [ 0.726, 0.449, -0.521 ], "quaternion": [ -0.455, 0.701, -0.519, 0.181 ] } }, { "index": 1434, "index_chain": 1434, "chain_name": "A", "nt_resnum": 1512, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1512", "linked_nts": [ "///A/1511", "///A/1513" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart", "alpha": -54.553, "beta": 157.701, "gamma": 56.491, "delta": 85.844, "epsilon": -156.012, "zeta": -177.327, "epsilon_zeta": 21.316, "bb_type": "--", "chi": -155.688, "glyco_bond": "anti", "C5prime_xyz": [ -1.347, 8.690, 0.295 ], "P_xyz": [ 1.250, 8.841, 0.027 ], "form": ".", "ssZp": 4.250, "Dp": 4.515, "splay_angle": 116.242, "splay_distance": 17.375, "splay_ratio": 0.851, "d22": null, "d64": null, "eta": 171.086, "theta": 117.050, "eta_prime": -174.201, "theta_prime": 93.231, "eta_base": -134.525, "theta_base": 86.767, "v0": 3.249, "v1": -23.095, "v2": 33.014, "v3": -32.130, "v4": 18.277, "amplitude": 33.927, "phase_angle": 13.324, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.739, "filter_rmsd": 0.017, "frame": { "rmsd": 0.017, "origin": [ 198.439, 185.292, 268.686 ], "x_axis": [ 0.058, -0.814, -0.578 ], "y_axis": [ -0.600, 0.435, -0.672 ], "z_axis": [ 0.798, 0.386, -0.463 ], "quaternion": [ 0.507, -0.521, 0.678, -0.106 ] } }, { "index": 1435, "index_chain": 1435, "chain_name": "A", "nt_resnum": 1513, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1513", "linked_nts": [ "///A/1512", "///A/1514" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": 30.449, "beta": -124.624, "gamma": -107.785, "delta": 79.468, "epsilon": -158.657, "zeta": -73.673, "epsilon_zeta": -84.984, "bb_type": "BI", "chi": -148.082, "glyco_bond": "anti", "C5prime_xyz": [ -1.701, 8.837, -0.226 ], "P_xyz": [ -2.386, 10.913, -1.669 ], "form": "A", "ssZp": 4.022, "Dp": 4.485, "splay_angle": 21.094, "splay_distance": 3.429, "splay_ratio": 0.184, "d22": 4.157, "d64": 4.154, "eta": -179.655, "theta": 147.097, "eta_prime": 159.960, "theta_prime": 163.395, "eta_base": 153.555, "theta_base": -164.624, "v0": -1.612, "v1": -21.704, "v2": 35.433, "v3": -37.309, "v4": 24.533, "amplitude": 37.941, "phase_angle": 20.949, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.099, "frame": { "rmsd": 0.007, "origin": [ 189.416, 200.054, 267.083 ], "x_axis": [ 0.265, 0.137, 0.955 ], "y_axis": [ 0.841, -0.516, -0.159 ], "z_axis": [ 0.471, 0.845, -0.252 ], "quaternion": [ -0.352, 0.713, 0.343, 0.500 ] } }, { "index": 1436, "index_chain": 1436, "chain_name": "A", "nt_resnum": 1514, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1514", "linked_nts": [ "///A/1513", "///A/1515" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -63.983, "beta": 167.190, "gamma": 54.046, "delta": 76.173, "epsilon": -175.706, "zeta": -115.840, "epsilon_zeta": -59.866, "bb_type": "BI", "chi": -157.714, "glyco_bond": "anti", "C5prime_xyz": [ -1.432, 8.837, 0.353 ], "P_xyz": [ 1.110, 9.402, 0.158 ], "form": ".", "ssZp": 4.388, "Dp": 4.498, "splay_angle": 49.744, "splay_distance": 6.751, "splay_ratio": 0.439, "d22": 11.073, "d64": 10.867, "eta": 163.199, "theta": 153.195, "eta_prime": 176.862, "theta_prime": 153.911, "eta_base": -144.123, "theta_base": -179.166, "v0": 1.032, "v1": -25.201, "v2": 38.484, "v3": -38.931, "v4": 23.960, "amplitude": 40.285, "phase_angle": 17.198, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.872, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 190.216, 203.385, 266.937 ], "x_axis": [ 0.572, -0.215, 0.791 ], "y_axis": [ 0.660, -0.451, -0.600 ], "z_axis": [ 0.486, 0.866, -0.116 ], "quaternion": [ 0.501, -0.731, -0.152, -0.437 ] } }, { "index": 1437, "index_chain": 1437, "chain_name": "A", "nt_resnum": 1515, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1515", "linked_nts": [ "///A/1514", "///A/1516" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -18.123, "beta": -175.614, "gamma": 34.761, "delta": 77.920, "epsilon": -171.391, "zeta": -99.132, "epsilon_zeta": -72.259, "bb_type": "BI", "chi": 12.451, "glyco_bond": "syn", "C5prime_xyz": [ -5.567, 4.079, -0.905 ], "P_xyz": [ -6.005, 1.806, -2.074 ], "form": ".", "ssZp": -4.397, "Dp": 4.404, "splay_angle": 43.656, "splay_distance": 6.527, "splay_ratio": 0.372, "d22": null, "d64": null, "eta": -151.916, "theta": -152.036, "eta_prime": -164.725, "theta_prime": -149.307, "eta_base": -172.011, "theta_base": -162.261, "v0": -1.626, "v1": -22.080, "v2": 36.051, "v3": -38.071, "v4": 25.069, "amplitude": 38.627, "phase_angle": 21.043, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.070, "frame": { "rmsd": 0.011, "origin": [ 190.696, 208.511, 262.571 ], "x_axis": [ -0.510, 0.851, 0.124 ], "y_axis": [ -0.097, 0.087, -0.992 ], "z_axis": [ -0.855, -0.518, 0.038 ], "quaternion": [ -0.392, 0.302, 0.624, -0.604 ] } }, { "index": 1438, "index_chain": 1438, "chain_name": "A", "nt_resnum": 1516, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1516", "linked_nts": [ "///A/1515", "///A/1517" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 162.603, "beta": -122.704, "gamma": 152.247, "delta": 81.641, "epsilon": -135.188, "zeta": -93.996, "epsilon_zeta": -41.192, "bb_type": "BI", "chi": 169.014, "glyco_bond": "anti", "C5prime_xyz": [ -1.754, 8.103, 2.214 ], "P_xyz": [ 0.657, 8.740, 1.452 ], "form": ".", "ssZp": 4.573, "Dp": 4.660, "splay_angle": 30.991, "splay_distance": 4.790, "splay_ratio": 0.272, "d22": null, "d64": null, "eta": 160.440, "theta": -107.923, "eta_prime": -179.942, "theta_prime": -120.836, "eta_base": 178.847, "theta_base": -78.306, "v0": 0.985, "v1": -22.867, "v2": 34.873, "v3": -35.285, "v4": 21.645, "amplitude": 36.491, "phase_angle": 17.130, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.043, "frame": { "rmsd": 0.013, "origin": [ 190.946, 214.370, 259.704 ], "x_axis": [ 0.292, -0.448, 0.845 ], "y_axis": [ 0.381, -0.756, -0.532 ], "z_axis": [ 0.877, 0.477, -0.050 ], "quaternion": [ -0.348, 0.724, -0.023, 0.595 ] } }, { "index": 1439, "index_chain": 1439, "chain_name": "A", "nt_resnum": 1517, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1517", "linked_nts": [ "///A/1516", "///A/1518" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 156.196, "beta": -124.324, "gamma": 160.268, "delta": 83.739, "epsilon": -120.743, "zeta": -69.390, "epsilon_zeta": -51.354, "bb_type": "--", "chi": 166.475, "glyco_bond": "anti", "C5prime_xyz": [ -2.181, 8.216, 2.194 ], "P_xyz": [ 0.243, 9.095, 1.783 ], "form": ".", "ssZp": 4.134, "Dp": 4.367, "splay_angle": 22.196, "splay_distance": 3.518, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 157.466, "theta": -124.162, "eta_prime": -172.592, "theta_prime": -129.922, "eta_base": -98.105, "theta_base": -76.870, "v0": -5.730, "v1": -15.806, "v2": 29.956, "v3": -34.201, "v4": 25.167, "amplitude": 33.969, "phase_angle": 28.131, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.074, "filter_rmsd": 0.043, "frame": { "rmsd": 0.012, "origin": [ 195.032, 214.472, 262.202 ], "x_axis": [ 0.362, -0.932, 0.037 ], "y_axis": [ -0.099, -0.077, -0.992 ], "z_axis": [ 0.927, 0.355, -0.120 ], "quaternion": [ 0.540, -0.624, 0.413, -0.386 ] } }, { "index": 1440, "index_chain": 1440, "chain_name": "A", "nt_resnum": 1518, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1518", "linked_nts": [ "///A/1517", "///A/1519" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": -63.540, "beta": 179.125, "gamma": 29.424, "delta": 77.222, "epsilon": 61.234, "zeta": 72.154, "epsilon_zeta": -10.920, "bb_type": "--", "chi": -141.455, "glyco_bond": "anti", "C5prime_xyz": [ -1.153, 8.622, -0.584 ], "P_xyz": [ 1.401, 9.147, -0.369 ], "form": ".", "ssZp": 2.583, "Dp": 3.312, "splay_angle": 20.181, "splay_distance": 3.539, "splay_ratio": 0.176, "d22": null, "d64": null, "eta": 171.003, "theta": -125.125, "eta_prime": -163.837, "theta_prime": -138.999, "eta_base": -93.466, "theta_base": -130.243, "v0": 6.701, "v1": -28.313, "v2": 38.174, "v3": -35.345, "v4": 18.073, "amplitude": 38.639, "phase_angle": 8.903, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.146, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 198.420, 213.648, 261.730 ], "x_axis": [ 0.150, -0.542, -0.827 ], "y_axis": [ -0.200, 0.802, -0.562 ], "z_axis": [ 0.968, 0.250, 0.012 ], "quaternion": [ 0.701, -0.290, 0.640, -0.122 ] } }, { "index": 1441, "index_chain": 1441, "chain_name": "A", "nt_resnum": 1519, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1519", "linked_nts": [ "///A/1518", "///A/1520" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": 67.247, "beta": -164.854, "gamma": 178.671, "delta": 81.993, "epsilon": -146.859, "zeta": -9.134, "epsilon_zeta": -137.725, "bb_type": "--", "chi": -139.764, "glyco_bond": "anti", "C5prime_xyz": [ -1.381, 8.747, -0.700 ], "P_xyz": [ -0.583, 9.745, -2.986 ], "form": ".", "ssZp": 3.622, "Dp": 4.596, "splay_angle": 30.470, "splay_distance": 5.460, "splay_ratio": 0.269, "d22": null, "d64": null, "eta": 144.110, "theta": -129.347, "eta_prime": 164.601, "theta_prime": -143.970, "eta_base": -171.911, "theta_base": -132.824, "v0": 0.803, "v1": -22.497, "v2": 34.423, "v3": -34.911, "v4": 21.550, "amplitude": 36.070, "phase_angle": 17.380, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.007, "origin": [ 201.782, 214.122, 262.728 ], "x_axis": [ 0.209, -0.271, -0.940 ], "y_axis": [ -0.015, 0.960, -0.280 ], "z_axis": [ 0.978, 0.073, 0.196 ], "quaternion": [ 0.769, -0.115, 0.624, -0.083 ] } }, { "index": 1442, "index_chain": 1442, "chain_name": "A", "nt_resnum": 1520, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1520", "linked_nts": [ "///A/1519", "///A/1521" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -150.732, "beta": 99.446, "gamma": 166.426, "delta": 83.291, "epsilon": -95.935, "zeta": -123.459, "epsilon_zeta": 27.524, "bb_type": "--", "chi": 174.365, "glyco_bond": "anti", "C5prime_xyz": [ -1.659, 8.218, 1.955 ], "P_xyz": [ -1.691, 10.588, 0.847 ], "form": ".", "ssZp": 4.596, "Dp": 4.649, "splay_angle": 23.446, "splay_distance": 3.720, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 169.221, "theta": -171.226, "eta_prime": 179.284, "theta_prime": -165.205, "eta_base": -155.478, "theta_base": -109.029, "v0": 2.427, "v1": -23.631, "v2": 34.584, "v3": -34.194, "v4": 20.037, "amplitude": 35.775, "phase_angle": 14.826, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 206.712, 212.803, 260.788 ], "x_axis": [ -0.421, -0.054, -0.905 ], "y_axis": [ -0.319, 0.943, 0.092 ], "z_axis": [ 0.849, 0.327, -0.415 ], "quaternion": [ 0.526, -0.112, 0.834, 0.126 ] } }, { "index": 1443, "index_chain": 1443, "chain_name": "A", "nt_resnum": 1521, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1521", "linked_nts": [ "///A/1520", "///A/1522" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 100.063, "beta": -103.565, "gamma": -179.972, "delta": 81.244, "epsilon": -123.250, "zeta": -79.079, "epsilon_zeta": -44.171, "bb_type": "--", "chi": 165.111, "glyco_bond": "anti", "C5prime_xyz": [ -1.498, 7.823, 2.417 ], "P_xyz": [ 0.110, 9.228, 0.908 ], "form": ".", "ssZp": 4.804, "Dp": 4.831, "splay_angle": 30.961, "splay_distance": 4.668, "splay_ratio": 0.275, "d22": null, "d64": null, "eta": 140.608, "theta": -144.674, "eta_prime": 170.497, "theta_prime": -148.258, "eta_base": -113.840, "theta_base": -119.233, "v0": 8.502, "v1": -30.113, "v2": 39.153, "v3": -35.275, "v4": 16.868, "amplitude": 39.399, "phase_angle": 6.406, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 208.287, 213.534, 257.498 ], "x_axis": [ -0.537, 0.586, -0.607 ], "y_axis": [ 0.113, 0.763, 0.636 ], "z_axis": [ 0.836, 0.273, -0.475 ], "quaternion": [ 0.433, 0.210, 0.833, 0.273 ] } }, { "index": 1444, "index_chain": 1444, "chain_name": "A", "nt_resnum": 1522, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1522", "linked_nts": [ "///A/1521", "///A/1523" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop", "alpha": -58.528, "beta": -179.367, "gamma": 51.389, "delta": 82.558, "epsilon": -153.967, "zeta": -60.311, "epsilon_zeta": -93.657, "bb_type": "BI", "chi": -169.202, "glyco_bond": "anti", "C5prime_xyz": [ -1.302, 8.552, 1.082 ], "P_xyz": [ 1.217, 8.816, 1.758 ], "form": ".", "ssZp": 4.557, "Dp": 4.603, "splay_angle": 48.882, "splay_distance": 8.446, "splay_ratio": 0.429, "d22": 7.660, "d64": 9.916, "eta": 171.410, "theta": -158.399, "eta_prime": -173.019, "theta_prime": -172.120, "eta_base": -125.408, "theta_base": 163.044, "v0": 3.863, "v1": -25.199, "v2": 35.785, "v3": -34.510, "v4": 19.338, "amplitude": 36.680, "phase_angle": 12.683, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.623, "filter_rmsd": 0.105, "frame": { "rmsd": 0.006, "origin": [ 210.118, 214.283, 253.269 ], "x_axis": [ -0.342, 0.938, 0.061 ], "y_axis": [ 0.404, 0.089, 0.910 ], "z_axis": [ 0.848, 0.336, -0.410 ], "quaternion": [ 0.290, 0.495, 0.678, 0.459 ] } }, { "index": 1445, "index_chain": 1445, "chain_name": "A", "nt_resnum": 1523, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1523", "linked_nts": [ "///A/1522", "///A/1524" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": -108.046, "beta": 102.433, "gamma": 176.853, "delta": 82.178, "epsilon": -101.667, "zeta": -39.760, "epsilon_zeta": -61.907, "bb_type": "--", "chi": -178.678, "glyco_bond": "anti", "C5prime_xyz": [ -1.686, 8.517, 1.566 ], "P_xyz": [ -2.009, 10.878, 0.499 ], "form": ".", "ssZp": 4.426, "Dp": 4.549, "splay_angle": 59.047, "splay_distance": 9.707, "splay_ratio": 0.495, "d22": null, "d64": null, "eta": -142.047, "theta": -109.920, "eta_prime": -158.691, "theta_prime": -96.057, "eta_base": 174.505, "theta_base": -42.843, "v0": -1.492, "v1": -20.403, "v2": 33.261, "v3": -35.069, "v4": 23.036, "amplitude": 35.615, "phase_angle": 20.951, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.595, "filter_rmsd": 0.103, "frame": { "rmsd": 0.008, "origin": [ 212.885, 207.470, 249.114 ], "x_axis": [ -0.181, 0.722, -0.668 ], "y_axis": [ 0.371, 0.679, 0.633 ], "z_axis": [ 0.911, -0.133, -0.391 ], "quaternion": [ 0.526, 0.364, 0.750, 0.167 ] } }, { "index": 1446, "index_chain": 1446, "chain_name": "A", "nt_resnum": 1524, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1524", "linked_nts": [ "///A/1523", "///A/1525" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop", "alpha": 109.378, "beta": -151.530, "gamma": -158.846, "delta": 83.208, "epsilon": -145.110, "zeta": -79.068, "epsilon_zeta": -66.042, "bb_type": "BI", "chi": -168.604, "glyco_bond": "anti", "C5prime_xyz": [ -0.831, 8.449, 1.074 ], "P_xyz": [ 0.414, 10.317, -0.270 ], "form": "A", "ssZp": 4.615, "Dp": 4.691, "splay_angle": 23.312, "splay_distance": 3.615, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 140.026, "theta": 179.882, "eta_prime": -177.644, "theta_prime": -172.533, "eta_base": -94.946, "theta_base": -148.046, "v0": 6.361, "v1": -26.856, "v2": 36.126, "v3": -33.420, "v4": 17.135, "amplitude": 36.563, "phase_angle": 8.863, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.015, "origin": [ 214.908, 216.896, 250.242 ], "x_axis": [ 0.160, 0.516, 0.841 ], "y_axis": [ 0.536, -0.761, 0.365 ], "z_axis": [ 0.829, 0.393, -0.399 ], "quaternion": [ -0.009, 0.761, 0.346, 0.548 ] } }, { "index": 1447, "index_chain": 1447, "chain_name": "A", "nt_resnum": 1525, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1525", "linked_nts": [ "///A/1524", "///A/1526" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -49.974, "beta": 160.627, "gamma": 47.794, "delta": 79.621, "epsilon": -140.689, "zeta": -102.987, "epsilon_zeta": -37.702, "bb_type": "BI", "chi": -174.259, "glyco_bond": "anti", "C5prime_xyz": [ -1.542, 8.552, 1.340 ], "P_xyz": [ 1.016, 8.876, 1.754 ], "form": "A", "ssZp": 4.680, "Dp": 4.702, "splay_angle": 23.085, "splay_distance": 3.539, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 168.936, "theta": -152.957, "eta_prime": -176.591, "theta_prime": -148.762, "eta_base": -141.538, "theta_base": -123.723, "v0": 2.262, "v1": -25.088, "v2": 37.171, "v3": -36.848, "v4": 21.808, "amplitude": 38.538, "phase_angle": 15.304, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.730, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 216.676, 219.549, 248.536 ], "x_axis": [ 0.321, 0.098, 0.942 ], "y_axis": [ 0.386, -0.922, -0.035 ], "z_axis": [ 0.865, 0.375, -0.333 ], "quaternion": [ -0.128, 0.802, 0.151, 0.563 ] } }, { "index": 1448, "index_chain": 1448, "chain_name": "A", "nt_resnum": 1526, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1526", "linked_nts": [ "///A/1525", "///A/1527" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -18.796, "beta": 141.114, "gamma": 37.238, "delta": 82.481, "epsilon": -140.413, "zeta": -75.312, "epsilon_zeta": -65.100, "bb_type": "BI", "chi": -169.852, "glyco_bond": "anti", "C5prime_xyz": [ -1.707, 8.711, 1.090 ], "P_xyz": [ 0.826, 8.799, 1.711 ], "form": "A", "ssZp": 4.425, "Dp": 4.518, "splay_angle": 23.627, "splay_distance": 3.956, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 178.876, "theta": -134.009, "eta_prime": -169.069, "theta_prime": -136.281, "eta_base": -133.809, "theta_base": -115.015, "v0": -2.369, "v1": -19.456, "v2": 32.608, "v3": -34.965, "v4": 23.545, "amplitude": 35.276, "phase_angle": 22.429, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 218.862, 222.284, 248.021 ], "x_axis": [ 0.406, -0.406, 0.819 ], "y_axis": [ 0.167, -0.848, -0.503 ], "z_axis": [ 0.898, 0.341, -0.277 ], "quaternion": [ -0.265, 0.795, -0.075, 0.540 ] } }, { "index": 1449, "index_chain": 1449, "chain_name": "A", "nt_resnum": 1527, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1527", "linked_nts": [ "///A/1526", "///A/1528" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,internal-loop", "alpha": -57.231, "beta": 167.494, "gamma": 52.828, "delta": 77.081, "epsilon": 167.277, "zeta": 112.332, "epsilon_zeta": 54.945, "bb_type": "--", "chi": -163.117, "glyco_bond": "anti", "C5prime_xyz": [ -1.679, 8.923, 0.612 ], "P_xyz": [ 0.748, 9.798, 0.936 ], "form": ".", "ssZp": 4.084, "Dp": 4.120, "splay_angle": 31.790, "splay_distance": 5.143, "splay_ratio": 0.276, "d22": 3.993, "d64": 3.503, "eta": 168.679, "theta": -38.363, "eta_prime": -172.712, "theta_prime": -67.219, "eta_base": -131.758, "theta_base": -37.757, "v0": -5.350, "v1": -18.146, "v2": 33.197, "v3": -37.308, "v4": 26.996, "amplitude": 37.177, "phase_angle": 26.754, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.892, "filter_rmsd": 0.059, "frame": { "rmsd": 0.007, "origin": [ 222.002, 224.615, 248.622 ], "x_axis": [ 0.371, -0.816, 0.444 ], "y_axis": [ -0.066, -0.500, -0.864 ], "z_axis": [ 0.926, 0.291, -0.239 ], "quaternion": [ -0.397, 0.726, -0.303, 0.472 ] } }, { "index": 1450, "index_chain": 1450, "chain_name": "A", "nt_resnum": 1528, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1528", "linked_nts": [ "///A/1527", "///A/1529" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -62.567, "beta": -64.096, "gamma": -130.371, "delta": 145.981, "epsilon": -60.972, "zeta": 86.796, "epsilon_zeta": 212.232, "bb_type": "--", "chi": -116.780, "glyco_bond": "anti", "C5prime_xyz": [ -2.446, 8.496, -1.428 ], "P_xyz": [ -3.156, 8.233, -3.959 ], "form": ".", "ssZp": -0.000, "Dp": 0.410, "splay_angle": 116.434, "splay_distance": 15.206, "splay_ratio": 0.851, "d22": null, "d64": null, "eta": -156.834, "theta": 66.138, "eta_prime": -144.853, "theta_prime": 94.113, "eta_base": -98.330, "theta_base": 132.172, "v0": -25.855, "v1": 39.681, "v2": -37.459, "v3": 23.557, "v4": 1.217, "amplitude": 40.002, "phase_angle": 159.460, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 224.521, 220.206, 247.803 ], "x_axis": [ -0.412, -0.891, -0.193 ], "y_axis": [ 0.184, 0.126, -0.975 ], "z_axis": [ 0.892, -0.437, 0.112 ], "quaternion": [ 0.454, -0.296, 0.597, -0.591 ] } }, { "index": 1451, "index_chain": 1451, "chain_name": "A", "nt_resnum": 1529, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1529", "linked_nts": [ "///A/1528", "///A/1530" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": 34.210, "beta": 122.929, "gamma": 42.983, "delta": 83.219, "epsilon": 163.072, "zeta": -79.170, "epsilon_zeta": -117.758, "bb_type": "BI", "chi": -128.182, "glyco_bond": "anti", "C5prime_xyz": [ -1.700, 8.487, -1.356 ], "P_xyz": [ 0.701, 7.900, -2.252 ], "form": "A", "ssZp": 3.350, "Dp": 4.161, "splay_angle": 19.157, "splay_distance": 3.156, "splay_ratio": 0.167, "d22": null, "d64": null, "eta": -87.958, "theta": -133.847, "eta_prime": -82.976, "theta_prime": -158.529, "eta_base": -79.844, "theta_base": -146.970, "v0": 2.062, "v1": -24.111, "v2": 35.594, "v3": -35.288, "v4": 20.997, "amplitude": 36.914, "phase_angle": 15.370, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.017, "frame": { "rmsd": 0.017, "origin": [ 232.027, 233.205, 245.371 ], "x_axis": [ 0.488, 0.092, -0.868 ], "y_axis": [ -0.661, -0.611, -0.437 ], "z_axis": [ -0.570, 0.786, -0.237 ], "quaternion": [ -0.400, 0.764, -0.186, -0.470 ] } }, { "index": 1452, "index_chain": 1452, "chain_name": "A", "nt_resnum": 1530, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1530", "linked_nts": [ "///A/1529", "///A/1531" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 154.250, "beta": -142.706, "gamma": 165.903, "delta": 85.262, "epsilon": -145.216, "zeta": -64.900, "epsilon_zeta": -80.316, "bb_type": "BI", "chi": -172.022, "glyco_bond": "anti", "C5prime_xyz": [ -1.221, 8.562, 1.279 ], "P_xyz": [ 0.826, 9.543, -0.040 ], "form": "A", "ssZp": 4.520, "Dp": 4.569, "splay_angle": 26.115, "splay_distance": 4.179, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 166.593, "theta": -145.825, "eta_prime": 179.550, "theta_prime": -149.590, "eta_base": -142.920, "theta_base": -120.886, "v0": 3.268, "v1": -22.993, "v2": 32.944, "v3": -31.911, "v4": 18.168, "amplitude": 33.841, "phase_angle": 13.219, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.277, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 230.963, 236.119, 244.788 ], "x_axis": [ 0.239, -0.217, -0.947 ], "y_axis": [ -0.822, -0.564, -0.078 ], "z_axis": [ -0.517, 0.797, -0.313 ], "quaternion": [ -0.301, 0.727, -0.357, -0.503 ] } }, { "index": 1453, "index_chain": 1453, "chain_name": "A", "nt_resnum": 1531, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1531", "linked_nts": [ "///A/1530", "///A/1532" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.646, "beta": 177.358, "gamma": 41.854, "delta": 78.178, "epsilon": -151.146, "zeta": -114.212, "epsilon_zeta": -36.933, "bb_type": "BI", "chi": -170.811, "glyco_bond": "anti", "C5prime_xyz": [ -1.640, 8.636, 1.137 ], "P_xyz": [ 0.756, 9.204, 2.000 ], "form": "A", "ssZp": 4.610, "Dp": 4.637, "splay_angle": 21.644, "splay_distance": 3.386, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": 160.602, "theta": -144.511, "eta_prime": 178.255, "theta_prime": -144.028, "eta_base": -131.951, "theta_base": -114.074, "v0": 1.079, "v1": -24.569, "v2": 37.486, "v3": -37.948, "v4": 23.176, "amplitude": 39.218, "phase_angle": 17.093, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.727, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 230.385, 239.548, 242.468 ], "x_axis": [ -0.220, -0.616, -0.756 ], "y_axis": [ -0.731, -0.409, 0.546 ], "z_axis": [ -0.646, 0.673, -0.360 ], "quaternion": [ -0.051, 0.622, -0.541, -0.563 ] } }, { "index": 1454, "index_chain": 1454, "chain_name": "A", "nt_resnum": 1532, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1532", "linked_nts": [ "///A/1531", "///A/1533" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 153.589, "beta": -119.950, "gamma": 162.899, "delta": 81.068, "epsilon": -117.233, "zeta": -104.087, "epsilon_zeta": -13.146, "bb_type": "--", "chi": 172.818, "glyco_bond": "anti", "C5prime_xyz": [ -1.716, 8.266, 2.018 ], "P_xyz": [ 0.514, 9.114, 0.978 ], "form": "A", "ssZp": 4.625, "Dp": 4.653, "splay_angle": 21.826, "splay_distance": 3.430, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 165.629, "theta": -148.185, "eta_prime": 179.156, "theta_prime": -150.902, "eta_base": -139.058, "theta_base": -126.248, "v0": -0.439, "v1": -21.649, "v2": 34.317, "v3": -35.573, "v4": 22.707, "amplitude": 36.370, "phase_angle": 19.340, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.041, "frame": { "rmsd": 0.011, "origin": [ 229.454, 241.408, 239.796 ], "x_axis": [ -0.464, -0.845, -0.266 ], "y_axis": [ -0.564, 0.051, 0.824 ], "z_axis": [ -0.683, 0.533, -0.500 ], "quaternion": [ -0.147, -0.496, 0.710, 0.478 ] } }, { "index": 1455, "index_chain": 1455, "chain_name": "A", "nt_resnum": 1533, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1533", "linked_nts": [ "///A/1532", "///A/1534" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -26.253, "beta": 150.593, "gamma": 21.628, "delta": 79.399, "epsilon": -172.439, "zeta": -99.931, "epsilon_zeta": -72.508, "bb_type": "BI", "chi": -162.632, "glyco_bond": "anti", "C5prime_xyz": [ -1.510, 8.703, 0.683 ], "P_xyz": [ 0.967, 9.046, 1.418 ], "form": "A", "ssZp": 4.406, "Dp": 4.449, "splay_angle": 23.024, "splay_distance": 3.533, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 157.077, "theta": -145.370, "eta_prime": 172.634, "theta_prime": -147.679, "eta_base": -142.880, "theta_base": -119.650, "v0": 0.981, "v1": -23.961, "v2": 36.591, "v3": -37.095, "v4": 22.713, "amplitude": 38.305, "phase_angle": 17.203, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 228.003, 242.448, 236.868 ], "x_axis": [ -0.619, -0.705, 0.346 ], "y_axis": [ -0.198, 0.566, 0.800 ], "z_axis": [ -0.760, 0.427, -0.490 ], "quaternion": [ -0.338, -0.276, 0.818, 0.375 ] } }, { "index": 1456, "index_chain": 1456, "chain_name": "A", "nt_resnum": 1534, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1534", "linked_nts": [ "///A/1533", "///A/1535" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 158.753, "beta": -124.925, "gamma": 158.406, "delta": 82.668, "epsilon": -85.492, "zeta": -154.691, "epsilon_zeta": 69.198, "bb_type": "BII", "chi": 169.082, "glyco_bond": "anti", "C5prime_xyz": [ -1.644, 8.040, 2.213 ], "P_xyz": [ 0.636, 8.884, 1.262 ], "form": ".", "ssZp": 4.646, "Dp": 4.666, "splay_angle": 12.527, "splay_distance": 2.121, "splay_ratio": 0.127, "d22": null, "d64": null, "eta": 178.412, "theta": -134.603, "eta_prime": -172.315, "theta_prime": -127.869, "eta_base": -131.779, "theta_base": -51.491, "v0": 4.011, "v1": -25.549, "v2": 36.170, "v3": -34.876, "v4": 19.484, "amplitude": 37.057, "phase_angle": 12.559, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.063, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 225.450, 242.567, 234.428 ], "x_axis": [ -0.636, -0.326, 0.699 ], "y_axis": [ 0.142, 0.841, 0.522 ], "z_axis": [ -0.758, 0.431, -0.489 ], "quaternion": [ -0.423, -0.053, 0.861, 0.277 ] } }, { "index": 1457, "index_chain": 1457, "chain_name": "A", "nt_resnum": 1535, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1535", "linked_nts": [ "///A/1534", "///A/1536" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart", "alpha": 110.079, "beta": -88.177, "gamma": -177.916, "delta": 148.523, "epsilon": -72.227, "zeta": -138.786, "epsilon_zeta": 66.559, "bb_type": "--", "chi": -103.016, "glyco_bond": "anti", "C5prime_xyz": [ -2.343, 8.062, -1.991 ], "P_xyz": [ -1.155, 6.679, -3.877 ], "form": ".", "ssZp": 0.091, "Dp": 0.251, "splay_angle": 111.727, "splay_distance": 13.896, "splay_ratio": 0.835, "d22": null, "d64": null, "eta": -90.797, "theta": -147.106, "eta_prime": -121.470, "theta_prime": -154.222, "eta_base": -47.492, "theta_base": 136.944, "v0": -20.850, "v1": 35.643, "v2": -35.985, "v3": 24.909, "v4": -2.759, "amplitude": 37.184, "phase_angle": 165.412, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.100, "frame": { "rmsd": 0.006, "origin": [ 224.107, 243.966, 235.288 ], "x_axis": [ -0.672, 0.169, 0.721 ], "y_axis": [ -0.332, 0.802, -0.497 ], "z_axis": [ -0.662, -0.573, -0.483 ], "quaternion": [ -0.402, -0.048, 0.860, -0.311 ] } }, { "index": 1458, "index_chain": 1458, "chain_name": "A", "nt_resnum": 1536, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1536", "linked_nts": [ "///A/1535", "///A/1537" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-stack,internal-loop,splayed-apart", "alpha": 38.042, "beta": 113.873, "gamma": 147.808, "delta": 147.657, "epsilon": -140.365, "zeta": -16.267, "epsilon_zeta": -124.098, "bb_type": "--", "chi": 45.504, "glyco_bond": "syn", "C5prime_xyz": [ -5.421, 3.612, 0.372 ], "P_xyz": [ -5.790, 2.209, 2.556 ], "form": ".", "ssZp": -1.734, "Dp": 1.752, "splay_angle": 93.661, "splay_distance": 13.995, "splay_ratio": 0.730, "d22": null, "d64": null, "eta": -6.377, "theta": -98.824, "eta_prime": 35.049, "theta_prime": -82.484, "eta_base": 109.641, "theta_base": -66.377, "v0": -21.263, "v1": 35.715, "v2": -35.633, "v3": 24.303, "v4": -2.102, "amplitude": 36.992, "phase_angle": 164.422, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 229.804, 246.165, 222.805 ], "x_axis": [ 0.602, 0.035, -0.798 ], "y_axis": [ -0.733, 0.420, -0.534 ], "z_axis": [ 0.317, 0.907, 0.279 ], "quaternion": [ 0.758, -0.475, 0.367, 0.253 ] } }, { "index": 1459, "index_chain": 1459, "chain_name": "A", "nt_resnum": 1537, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1537", "linked_nts": [ "///A/1536", "///A/1538" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": -100.335, "beta": -156.882, "gamma": 63.694, "delta": 80.188, "epsilon": -150.058, "zeta": -73.715, "epsilon_zeta": -76.344, "bb_type": "BI", "chi": -174.340, "glyco_bond": "anti", "C5prime_xyz": [ -1.650, 8.593, 1.333 ], "P_xyz": [ 0.722, 8.941, 2.362 ], "form": "A", "ssZp": 4.603, "Dp": 4.618, "splay_angle": 22.893, "splay_distance": 3.681, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 160.644, "theta": -147.786, "eta_prime": -152.101, "theta_prime": -145.053, "eta_base": -132.599, "theta_base": -121.200, "v0": 1.065, "v1": -24.035, "v2": 36.542, "v3": -36.960, "v4": 22.630, "amplitude": 38.222, "phase_angle": 17.050, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 218.283, 242.251, 229.719 ], "x_axis": [ 0.248, 0.790, 0.561 ], "y_axis": [ 0.408, 0.440, -0.800 ], "z_axis": [ -0.879, 0.427, -0.213 ], "quaternion": [ 0.607, -0.505, -0.593, 0.157 ] } }, { "index": 1460, "index_chain": 1460, "chain_name": "A", "nt_resnum": 1538, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1538", "linked_nts": [ "///A/1537", "///A/1539" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,splayed-apart", "alpha": -62.719, "beta": 173.021, "gamma": 53.962, "delta": 80.016, "epsilon": -116.465, "zeta": 22.513, "epsilon_zeta": 221.021, "bb_type": "--", "chi": -169.016, "glyco_bond": "anti", "C5prime_xyz": [ -1.646, 8.700, 1.021 ], "P_xyz": [ 0.858, 9.297, 1.488 ], "form": ".", "ssZp": 4.476, "Dp": 4.699, "splay_angle": 140.697, "splay_distance": 13.974, "splay_ratio": 0.945, "d22": null, "d64": null, "eta": 177.109, "theta": -3.694, "eta_prime": -174.013, "theta_prime": -8.958, "eta_base": -141.473, "theta_base": -163.632, "v0": -0.127, "v1": -22.735, "v2": 35.640, "v3": -36.745, "v4": 23.222, "amplitude": 37.650, "phase_angle": 18.809, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.986, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 214.939, 242.997, 231.066 ], "x_axis": [ 0.444, 0.893, 0.072 ], "y_axis": [ 0.206, -0.023, -0.978 ], "z_axis": [ -0.872, 0.449, -0.194 ], "quaternion": [ 0.554, -0.644, -0.426, 0.310 ] } }, { "index": 1461, "index_chain": 1461, "chain_name": "A", "nt_resnum": 1539, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1539", "linked_nts": [ "///A/1538", "///A/1540" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-stack,hairpin-loop,splayed-apart", "alpha": -158.135, "beta": -115.364, "gamma": 173.090, "delta": 144.699, "epsilon": -135.522, "zeta": -16.254, "epsilon_zeta": -119.268, "bb_type": "--", "chi": 56.364, "glyco_bond": "syn", "C5prime_xyz": [ -5.403, 4.084, 1.027 ], "P_xyz": [ -4.462, 2.257, 2.645 ], "form": ".", "ssZp": -1.754, "Dp": 1.741, "splay_angle": 56.799, "splay_distance": 9.577, "splay_ratio": 0.476, "d22": null, "d64": null, "eta": -106.466, "theta": -40.602, "eta_prime": -46.418, "theta_prime": -79.624, "eta_base": 107.006, "theta_base": -78.790, "v0": -21.750, "v1": 34.695, "v2": -33.688, "v3": 22.065, "v4": -0.397, "amplitude": 35.451, "phase_angle": 161.853, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 206.221, 241.422, 220.258 ], "x_axis": [ -0.416, -0.308, -0.856 ], "y_axis": [ 0.615, 0.598, -0.514 ], "z_axis": [ 0.670, -0.740, -0.060 ], "quaternion": [ 0.530, 0.107, 0.720, -0.435 ] } }, { "index": 1462, "index_chain": 1462, "chain_name": "A", "nt_resnum": 1540, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1540", "linked_nts": [ "///A/1539", "///A/1541" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop", "alpha": -95.859, "beta": -154.859, "gamma": 0.251, "delta": 80.943, "epsilon": -135.507, "zeta": -77.726, "epsilon_zeta": -57.781, "bb_type": "BI", "chi": -179.794, "glyco_bond": "anti", "C5prime_xyz": [ -1.666, 8.440, 1.634 ], "P_xyz": [ -0.703, 9.352, 3.894 ], "form": "A", "ssZp": 4.650, "Dp": 4.666, "splay_angle": 23.864, "splay_distance": 3.610, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 104.527, "theta": -161.370, "eta_prime": 145.892, "theta_prime": -147.817, "eta_base": 176.378, "theta_base": -86.181, "v0": 0.458, "v1": -22.768, "v2": 35.089, "v3": -35.834, "v4": 22.319, "amplitude": 36.878, "phase_angle": 17.923, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.006, "origin": [ 206.135, 246.187, 228.565 ], "x_axis": [ -0.008, -0.952, -0.305 ], "y_axis": [ 0.261, 0.293, -0.920 ], "z_axis": [ 0.965, -0.087, 0.246 ], "quaternion": [ 0.619, -0.337, 0.513, -0.490 ] } }, { "index": 1463, "index_chain": 1463, "chain_name": "A", "nt_resnum": 1541, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1541", "linked_nts": [ "///A/1540", "///A/1542" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop,ribose-zipper", "alpha": -62.971, "beta": 159.675, "gamma": 55.999, "delta": 82.239, "epsilon": -141.809, "zeta": -80.564, "epsilon_zeta": -61.246, "bb_type": "BI", "chi": -173.767, "glyco_bond": "anti", "C5prime_xyz": [ -1.322, 8.458, 1.333 ], "P_xyz": [ 1.286, 8.594, 1.490 ], "form": "A", "ssZp": 4.661, "Dp": 4.692, "splay_angle": 23.125, "splay_distance": 3.501, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 161.666, "theta": -143.664, "eta_prime": -179.512, "theta_prime": -144.128, "eta_base": -112.472, "theta_base": -116.612, "v0": 4.488, "v1": -25.908, "v2": 36.301, "v3": -34.681, "v4": 19.058, "amplitude": 37.085, "phase_angle": 11.801, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.833, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 208.989, 244.086, 229.254 ], "x_axis": [ 0.203, -0.434, -0.878 ], "y_axis": [ 0.187, 0.897, -0.400 ], "z_axis": [ 0.961, -0.082, 0.263 ], "quaternion": [ 0.769, -0.103, 0.598, -0.202 ] } }, { "index": 1464, "index_chain": 1464, "chain_name": "A", "nt_resnum": 1542, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1542", "linked_nts": [ "///A/1541", "///A/1543" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,A-minor,ribose-zipper,splayed-apart", "alpha": -61.179, "beta": 156.789, "gamma": 61.711, "delta": 82.518, "epsilon": -139.350, "zeta": -119.962, "epsilon_zeta": -19.388, "bb_type": "--", "chi": -176.905, "glyco_bond": "anti", "C5prime_xyz": [ -1.429, 8.401, 1.491 ], "P_xyz": [ 1.174, 8.631, 1.526 ], "form": ".", "ssZp": 4.673, "Dp": 4.690, "splay_angle": 119.022, "splay_distance": 14.903, "splay_ratio": 0.862, "d22": null, "d64": null, "eta": 168.933, "theta": 169.156, "eta_prime": -175.279, "theta_prime": 145.737, "eta_base": -128.278, "theta_base": 97.394, "v0": 3.553, "v1": -25.144, "v2": 35.980, "v3": -34.927, "v4": 19.802, "amplitude": 36.961, "phase_angle": 13.230, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.762, "filter_rmsd": 0.038, "frame": { "rmsd": 0.010, "origin": [ 211.923, 242.313, 229.964 ], "x_axis": [ 0.295, 0.147, -0.944 ], "y_axis": [ 0.034, 0.986, 0.164 ], "z_axis": [ 0.955, -0.081, 0.285 ], "quaternion": [ 0.801, 0.076, 0.593, 0.035 ] } }, { "index": 1465, "index_chain": 1465, "chain_name": "A", "nt_resnum": 1543, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1543", "linked_nts": [ "///A/1542", "///A/1544" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -157.555, "beta": 147.200, "gamma": 58.899, "delta": 144.560, "epsilon": -132.004, "zeta": -27.824, "epsilon_zeta": -104.179, "bb_type": "--", "chi": -123.590, "glyco_bond": "anti", "C5prime_xyz": [ -1.862, 8.560, -1.062 ], "P_xyz": [ 0.748, 8.674, -0.894 ], "form": ".", "ssZp": 1.743, "Dp": 1.731, "splay_angle": 96.054, "splay_distance": 14.349, "splay_ratio": 0.744, "d22": 6.089, "d64": 7.585, "eta": 80.238, "theta": -24.357, "eta_prime": 99.949, "theta_prime": -55.557, "eta_base": 83.580, "theta_base": -25.443, "v0": -21.152, "v1": 34.143, "v2": -33.429, "v3": 22.075, "v4": -0.768, "amplitude": 35.052, "phase_angle": 162.493, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1z", "suiteness": 0.195, "filter_rmsd": 0.102, "frame": { "rmsd": 0.004, "origin": [ 210.817, 250.953, 242.057 ], "x_axis": [ -0.411, 0.577, -0.706 ], "y_axis": [ 0.510, -0.496, -0.702 ], "z_axis": [ -0.756, -0.649, -0.090 ], "quaternion": [ 0.025, -0.542, -0.501, 0.674 ] } }, { "index": 1466, "index_chain": 1466, "chain_name": "A", "nt_resnum": 1544, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1544", "linked_nts": [ "///A/1543", "///A/1545" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,splayed-apart", "alpha": -95.711, "beta": -156.979, "gamma": 31.921, "delta": 82.949, "epsilon": -158.724, "zeta": -74.720, "epsilon_zeta": -84.004, "bb_type": "BI", "chi": -175.174, "glyco_bond": "anti", "C5prime_xyz": [ -1.199, 8.500, 1.444 ], "P_xyz": [ 0.656, 8.681, 3.289 ], "form": "A", "ssZp": 4.489, "Dp": 4.522, "splay_angle": 23.719, "splay_distance": 3.961, "splay_ratio": 0.215, "d22": 4.411, "d64": 4.853, "eta": 130.418, "theta": -131.924, "eta_prime": 175.968, "theta_prime": -134.211, "eta_base": -145.978, "theta_base": -105.958, "v0": 2.957, "v1": -23.800, "v2": 34.459, "v3": -33.722, "v4": 19.417, "amplitude": 35.509, "phase_angle": 13.970, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.010, "filter_rmsd": 0.065, "frame": { "rmsd": 0.007, "origin": [ 215.292, 242.977, 231.001 ], "x_axis": [ 0.460, 0.885, 0.079 ], "y_axis": [ -0.281, 0.061, 0.958 ], "z_axis": [ 0.843, -0.462, 0.276 ], "quaternion": [ 0.670, 0.530, 0.285, 0.435 ] } }, { "index": 1467, "index_chain": 1467, "chain_name": "A", "nt_resnum": 1545, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1545", "linked_nts": [ "///A/1544", "///A/1546" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 166.220, "beta": -163.150, "gamma": 162.994, "delta": 81.737, "epsilon": -124.947, "zeta": -69.008, "epsilon_zeta": -55.939, "bb_type": "--", "chi": 172.166, "glyco_bond": "anti", "C5prime_xyz": [ -1.326, 8.157, 2.127 ], "P_xyz": [ 0.743, 9.646, 1.595 ], "form": "A", "ssZp": 4.732, "Dp": 4.746, "splay_angle": 26.151, "splay_distance": 4.101, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": 160.000, "theta": -142.039, "eta_prime": 176.638, "theta_prime": -139.223, "eta_base": -139.382, "theta_base": -93.873, "v0": 4.614, "v1": -26.230, "v2": 36.745, "v3": -35.081, "v4": 19.191, "amplitude": 37.525, "phase_angle": 11.704, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.515, "filter_rmsd": 0.066, "frame": { "rmsd": 0.008, "origin": [ 218.980, 242.149, 229.818 ], "x_axis": [ 0.199, 0.794, 0.574 ], "y_axis": [ -0.506, -0.418, 0.754 ], "z_axis": [ 0.839, -0.441, 0.319 ], "quaternion": [ 0.524, 0.570, 0.126, 0.620 ] } }, { "index": 1468, "index_chain": 1468, "chain_name": "A", "nt_resnum": 1546, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1546", "linked_nts": [ "///A/1545", "///A/1547" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -58.260, "beta": 169.084, "gamma": 46.075, "delta": 80.236, "epsilon": -146.034, "zeta": -72.507, "epsilon_zeta": -73.527, "bb_type": "BI", "chi": -175.047, "glyco_bond": "anti", "C5prime_xyz": [ -1.592, 8.586, 1.374 ], "P_xyz": [ 0.870, 9.006, 2.141 ], "form": "A", "ssZp": 4.619, "Dp": 4.632, "splay_angle": 24.863, "splay_distance": 3.828, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 157.768, "theta": -143.414, "eta_prime": -179.598, "theta_prime": -139.749, "eta_base": -112.706, "theta_base": -102.473, "v0": 0.658, "v1": -23.491, "v2": 36.126, "v3": -36.753, "v4": 22.752, "amplitude": 37.909, "phase_angle": 17.640, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.644, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 222.529, 243.050, 231.663 ], "x_axis": [ -0.333, 0.263, 0.906 ], "y_axis": [ -0.528, -0.848, 0.052 ], "z_axis": [ 0.782, -0.461, 0.421 ], "quaternion": [ 0.245, 0.523, -0.127, 0.806 ] } }, { "index": 1469, "index_chain": 1469, "chain_name": "A", "nt_resnum": 1547, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1547", "linked_nts": [ "///A/1546", "///A/1548" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -63.208, "beta": 176.015, "gamma": 51.481, "delta": 82.917, "epsilon": -152.166, "zeta": -76.575, "epsilon_zeta": -75.591, "bb_type": "BI", "chi": -166.847, "glyco_bond": "anti", "C5prime_xyz": [ -1.288, 8.597, 0.950 ], "P_xyz": [ 1.260, 8.855, 1.485 ], "form": "A", "ssZp": 4.522, "Dp": 4.592, "splay_angle": 19.996, "splay_distance": 3.156, "splay_ratio": 0.176, "d22": 4.513, "d64": 4.502, "eta": 168.491, "theta": -149.353, "eta_prime": -176.546, "theta_prime": -148.906, "eta_base": -124.600, "theta_base": -130.757, "v0": 3.125, "v1": -24.489, "v2": 35.369, "v3": -34.566, "v4": 19.838, "amplitude": 36.425, "phase_angle": 13.826, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.980, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 225.250, 242.878, 234.351 ], "x_axis": [ -0.659, -0.335, 0.674 ], "y_axis": [ -0.178, -0.801, -0.572 ], "z_axis": [ 0.731, -0.497, 0.468 ], "quaternion": [ -0.046, 0.411, -0.312, 0.855 ] } }, { "index": 1470, "index_chain": 1470, "chain_name": "A", "nt_resnum": 1548, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1548", "linked_nts": [ "///A/1547", "///A/1549" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.784, "beta": 167.223, "gamma": 54.767, "delta": 80.056, "epsilon": -148.223, "zeta": -75.488, "epsilon_zeta": -72.735, "bb_type": "BI", "chi": -160.095, "glyco_bond": "anti", "C5prime_xyz": [ -1.392, 8.723, 0.530 ], "P_xyz": [ 1.188, 9.139, 0.492 ], "form": "A", "ssZp": 4.424, "Dp": 4.642, "splay_angle": 24.439, "splay_distance": 3.843, "splay_ratio": 0.213, "d22": 4.067, "d64": 3.910, "eta": 167.940, "theta": -147.326, "eta_prime": -179.540, "theta_prime": -147.526, "eta_base": -147.016, "theta_base": -123.403, "v0": 2.316, "v1": -24.995, "v2": 36.984, "v3": -36.637, "v4": 21.630, "amplitude": 38.328, "phase_angle": 15.214, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.952, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 227.486, 242.898, 236.578 ], "x_axis": [ -0.618, -0.697, 0.363 ], "y_axis": [ 0.254, -0.614, -0.747 ], "z_axis": [ 0.744, -0.369, 0.557 ], "quaternion": [ -0.285, 0.332, -0.334, 0.835 ] } }, { "index": 1471, "index_chain": 1471, "chain_name": "A", "nt_resnum": 1549, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1549", "linked_nts": [ "///A/1548", "///A/1550" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.832, "beta": 176.133, "gamma": 48.133, "delta": 81.112, "epsilon": 174.591, "zeta": -78.883, "epsilon_zeta": -106.525, "bb_type": "BI", "chi": -168.592, "glyco_bond": "anti", "C5prime_xyz": [ -1.325, 8.627, 1.044 ], "P_xyz": [ 1.174, 8.984, 1.727 ], "form": "A", "ssZp": 4.289, "Dp": 4.305, "splay_angle": 22.316, "splay_distance": 3.349, "splay_ratio": 0.194, "d22": 4.589, "d64": 4.215, "eta": 163.532, "theta": -149.510, "eta_prime": 178.384, "theta_prime": -148.217, "eta_base": -140.182, "theta_base": -121.182, "v0": 1.991, "v1": -24.036, "v2": 35.706, "v3": -35.475, "v4": 21.156, "amplitude": 37.065, "phase_angle": 15.563, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.935, "filter_rmsd": 0.105, "frame": { "rmsd": 0.006, "origin": [ 229.196, 241.701, 239.806 ], "x_axis": [ -0.628, -0.713, -0.312 ], "y_axis": [ 0.537, -0.107, -0.837 ], "z_axis": [ 0.563, -0.693, 0.450 ], "quaternion": [ -0.423, 0.085, -0.518, 0.739 ] } }, { "index": 1472, "index_chain": 1472, "chain_name": "A", "nt_resnum": 1550, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1550", "linked_nts": [ "///A/1549", "///A/1551" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -156.365, "beta": -131.322, "gamma": 114.193, "delta": 81.160, "epsilon": -155.980, "zeta": -68.268, "epsilon_zeta": -87.712, "bb_type": "BI", "chi": -172.292, "glyco_bond": "anti", "C5prime_xyz": [ -1.444, 8.699, 1.228 ], "P_xyz": [ 1.175, 8.600, 1.162 ], "form": "A", "ssZp": 4.439, "Dp": 4.488, "splay_angle": 21.828, "splay_distance": 3.487, "splay_ratio": 0.192, "d22": 4.616, "d64": 4.436, "eta": 162.123, "theta": -137.600, "eta_prime": 176.053, "theta_prime": -143.558, "eta_base": -143.384, "theta_base": -127.889, "v0": -0.991, "v1": -21.263, "v2": 34.149, "v3": -35.656, "v4": 23.086, "amplitude": 36.364, "phase_angle": 20.104, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.007, "origin": [ 230.036, 239.674, 242.336 ], "x_axis": [ -0.247, -0.572, -0.782 ], "y_axis": [ 0.817, 0.311, -0.485 ], "z_axis": [ 0.521, -0.759, 0.391 ], "quaternion": [ 0.603, 0.113, 0.540, -0.576 ] } }, { "index": 1473, "index_chain": 1473, "chain_name": "A", "nt_resnum": 1551, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1551", "linked_nts": [ "///A/1550", "///A/1552" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -68.757, "beta": -170.458, "gamma": 45.417, "delta": 83.536, "epsilon": -135.490, "zeta": -95.497, "epsilon_zeta": -39.993, "bb_type": "BI", "chi": -155.502, "glyco_bond": "anti", "C5prime_xyz": [ -1.242, 8.767, 0.299 ], "P_xyz": [ 1.193, 9.229, 1.142 ], "form": ".", "ssZp": 4.130, "Dp": 4.600, "splay_angle": 17.242, "splay_distance": 2.778, "splay_ratio": 0.151, "d22": 4.192, "d64": 3.746, "eta": 172.612, "theta": -152.141, "eta_prime": -178.926, "theta_prime": -146.967, "eta_base": -148.458, "theta_base": -121.854, "v0": 1.821, "v1": -22.860, "v2": 34.075, "v3": -33.963, "v4": 20.283, "amplitude": 35.404, "phase_angle": 15.744, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.792, "filter_rmsd": 0.062, "frame": { "rmsd": 0.006, "origin": [ 230.087, 236.770, 244.266 ], "x_axis": [ 0.181, -0.217, -0.959 ], "y_axis": [ 0.845, 0.534, 0.038 ], "z_axis": [ 0.504, -0.817, 0.280 ], "quaternion": [ 0.706, 0.303, 0.518, -0.376 ] } }, { "index": 1474, "index_chain": 1474, "chain_name": "A", "nt_resnum": 1552, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1552", "linked_nts": [ "///A/1551", "///A/1553" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop", "alpha": -44.630, "beta": 145.843, "gamma": 47.379, "delta": 81.418, "epsilon": -144.913, "zeta": -105.877, "epsilon_zeta": -39.036, "bb_type": "BI", "chi": -150.291, "glyco_bond": "anti", "C5prime_xyz": [ -1.562, 8.821, -0.067 ], "P_xyz": [ 1.013, 9.015, -0.453 ], "form": ".", "ssZp": 4.057, "Dp": 4.593, "splay_angle": 27.444, "splay_distance": 4.321, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 164.524, "theta": -156.062, "eta_prime": 178.604, "theta_prime": -148.492, "eta_base": -146.757, "theta_base": -125.287, "v0": -0.213, "v1": -21.838, "v2": 34.352, "v3": -35.454, "v4": 22.506, "amplitude": 36.324, "phase_angle": 18.967, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.322, "filter_rmsd": 0.061, "frame": { "rmsd": 0.009, "origin": [ 231.049, 234.218, 244.798 ], "x_axis": [ 0.502, 0.100, -0.859 ], "y_axis": [ 0.775, 0.388, 0.499 ], "z_axis": [ 0.383, -0.916, 0.117 ], "quaternion": [ 0.708, 0.499, 0.438, -0.238 ] } }, { "index": 1475, "index_chain": 1475, "chain_name": "A", "nt_resnum": 1553, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1553", "linked_nts": [ "///A/1552", "///A/1554" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop", "alpha": -23.900, "beta": 140.598, "gamma": 60.109, "delta": 147.885, "epsilon": -144.588, "zeta": -140.641, "epsilon_zeta": -3.947, "bb_type": "--", "chi": -134.532, "glyco_bond": "anti", "C5prime_xyz": [ -1.897, 8.668, -0.395 ], "P_xyz": [ 0.672, 8.684, 0.049 ], "form": ".", "ssZp": 1.747, "Dp": 1.801, "splay_angle": 23.713, "splay_distance": 4.251, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": -177.070, "theta": -104.506, "eta_prime": -136.334, "theta_prime": -137.581, "eta_base": -111.371, "theta_base": -143.025, "v0": -21.806, "v1": 36.331, "v2": -36.226, "v3": 24.543, "v4": -1.920, "amplitude": 37.659, "phase_angle": 164.140, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.036, "frame": { "rmsd": 0.007, "origin": [ 233.095, 230.419, 244.559 ], "x_axis": [ 0.653, 0.529, -0.542 ], "y_axis": [ 0.453, 0.300, 0.840 ], "z_axis": [ 0.607, -0.794, -0.044 ], "quaternion": [ 0.691, 0.591, 0.415, 0.027 ] } }, { "index": 1476, "index_chain": 1476, "chain_name": "A", "nt_resnum": 1554, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1554", "linked_nts": [ "///A/1553", "///A/1555" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate", "alpha": 33.431, "beta": 134.706, "gamma": -50.583, "delta": 147.505, "epsilon": -115.903, "zeta": 78.605, "epsilon_zeta": 165.492, "bb_type": "--", "chi": -93.719, "glyco_bond": "anti", "C5prime_xyz": [ -2.357, 7.801, -2.363 ], "P_xyz": [ -1.396, 10.233, -2.237 ], "form": ".", "ssZp": 0.980, "Dp": 1.324, "splay_angle": 52.779, "splay_distance": 8.799, "splay_ratio": 0.446, "d22": null, "d64": null, "eta": 161.300, "theta": 60.475, "eta_prime": 178.031, "theta_prime": 61.910, "eta_base": -175.370, "theta_base": 50.941, "v0": -19.773, "v1": 34.301, "v2": -34.921, "v3": 24.423, "v4": -3.088, "amplitude": 35.972, "phase_angle": 166.118, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.107, "frame": { "rmsd": 0.004, "origin": [ 232.698, 226.354, 243.380 ], "x_axis": [ 0.644, 0.707, -0.293 ], "y_axis": [ 0.315, 0.104, 0.943 ], "z_axis": [ 0.697, -0.700, -0.156 ], "quaternion": [ 0.631, 0.651, 0.393, 0.155 ] } }, { "index": 1477, "index_chain": 1477, "chain_name": "A", "nt_resnum": 1555, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1555", "linked_nts": [ "///A/1554", "///A/1556" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop", "alpha": -94.768, "beta": 158.426, "gamma": 38.683, "delta": 145.296, "epsilon": -1.732, "zeta": 167.503, "epsilon_zeta": 190.765, "bb_type": "--", "chi": -84.635, "glyco_bond": "anti", "C5prime_xyz": [ -3.357, 7.564, -2.431 ], "P_xyz": [ -1.202, 8.755, -3.336 ], "form": ".", "ssZp": 0.633, "Dp": 1.294, "splay_angle": 23.556, "splay_distance": 3.940, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 160.937, "theta": -120.437, "eta_prime": -152.184, "theta_prime": 178.024, "eta_base": -179.725, "theta_base": -101.694, "v0": -26.993, "v1": 39.771, "v2": -36.414, "v3": 21.875, "v4": 2.954, "amplitude": 39.593, "phase_angle": 156.882, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "0b", "suiteness": 0.181, "filter_rmsd": 0.037, "frame": { "rmsd": 0.008, "origin": [ 227.666, 230.015, 249.601 ], "x_axis": [ -0.065, -0.316, -0.946 ], "y_axis": [ 0.177, -0.937, 0.301 ], "z_axis": [ -0.982, -0.148, 0.117 ], "quaternion": [ -0.169, -0.662, 0.052, 0.728 ] } }, { "index": 1478, "index_chain": 1478, "chain_name": "A", "nt_resnum": 1556, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1556", "linked_nts": [ "///A/1555", "///A/1557" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -42.247, "beta": -94.631, "gamma": -164.671, "delta": 78.412, "epsilon": -146.029, "zeta": -63.981, "epsilon_zeta": -82.048, "bb_type": "BI", "chi": -164.928, "glyco_bond": "anti", "C5prime_xyz": [ -1.428, 8.682, 0.782 ], "P_xyz": [ -0.980, 9.611, -1.618 ], "form": ".", "ssZp": 4.537, "Dp": 4.683, "splay_angle": 28.960, "splay_distance": 4.348, "splay_ratio": 0.250, "d22": null, "d64": null, "eta": 113.840, "theta": -162.633, "eta_prime": 130.169, "theta_prime": -162.995, "eta_base": -137.637, "theta_base": -110.746, "v0": 2.321, "v1": -25.855, "v2": 38.353, "v3": -37.964, "v4": 22.449, "amplitude": 39.758, "phase_angle": 15.276, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.008, "origin": [ 224.223, 228.373, 248.617 ], "x_axis": [ 0.116, -0.899, -0.422 ], "y_axis": [ 0.299, -0.373, 0.878 ], "z_axis": [ -0.947, -0.228, 0.226 ], "quaternion": [ -0.492, -0.562, 0.267, 0.609 ] } }, { "index": 1479, "index_chain": 1479, "chain_name": "A", "nt_resnum": 1557, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1557", "linked_nts": [ "///A/1556", "///A/1558" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop", "alpha": -64.616, "beta": 166.979, "gamma": 54.897, "delta": 81.223, "epsilon": -142.486, "zeta": -83.368, "epsilon_zeta": -59.119, "bb_type": "BI", "chi": -175.402, "glyco_bond": "anti", "C5prime_xyz": [ -1.191, 8.407, 1.425 ], "P_xyz": [ 1.419, 8.464, 1.665 ], "form": "A", "ssZp": 4.720, "Dp": 4.735, "splay_angle": 24.544, "splay_distance": 3.731, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 162.864, "theta": -145.032, "eta_prime": -175.428, "theta_prime": -143.437, "eta_base": -100.201, "theta_base": -120.227, "v0": 6.965, "v1": -28.493, "v2": 38.150, "v3": -35.156, "v4": 17.772, "amplitude": 38.570, "phase_angle": 8.463, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.933, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 221.920, 224.691, 248.402 ], "x_axis": [ 0.424, -0.803, 0.419 ], "y_axis": [ 0.077, 0.493, 0.867 ], "z_axis": [ -0.902, -0.336, 0.271 ], "quaternion": [ 0.740, 0.407, -0.447, -0.297 ] } }, { "index": 1480, "index_chain": 1480, "chain_name": "A", "nt_resnum": 1558, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1558", "linked_nts": [ "///A/1557", "///A/1559" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -42.648, "beta": 163.041, "gamma": 47.022, "delta": 81.194, "epsilon": -141.628, "zeta": -81.847, "epsilon_zeta": -59.781, "bb_type": "BI", "chi": -170.934, "glyco_bond": "anti", "C5prime_xyz": [ -1.209, 8.591, 1.191 ], "P_xyz": [ 1.358, 8.708, 1.672 ], "form": "A", "ssZp": 4.617, "Dp": 4.673, "splay_angle": 21.747, "splay_distance": 3.454, "splay_ratio": 0.191, "d22": 4.170, "d64": 4.305, "eta": 176.940, "theta": -143.622, "eta_prime": -170.636, "theta_prime": -141.680, "eta_base": -132.671, "theta_base": -118.602, "v0": 2.669, "v1": -24.515, "v2": 35.863, "v3": -35.296, "v4": 20.579, "amplitude": 37.055, "phase_angle": 14.571, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.529, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 219.216, 222.155, 247.981 ], "x_axis": [ 0.419, -0.392, 0.819 ], "y_axis": [ -0.159, 0.857, 0.491 ], "z_axis": [ -0.894, -0.336, 0.296 ], "quaternion": [ 0.802, 0.258, -0.534, -0.072 ] } }, { "index": 1481, "index_chain": 1481, "chain_name": "A", "nt_resnum": 1559, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1559", "linked_nts": [ "///A/1558", "///A/1560" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": -45.923, "beta": 162.237, "gamma": 45.177, "delta": 80.855, "epsilon": -138.687, "zeta": -111.598, "epsilon_zeta": -27.089, "bb_type": "--", "chi": -165.473, "glyco_bond": "anti", "C5prime_xyz": [ -1.483, 8.766, 0.831 ], "P_xyz": [ 1.054, 9.162, 1.334 ], "form": "A", "ssZp": 4.435, "Dp": 4.604, "splay_angle": 24.094, "splay_distance": 3.974, "splay_ratio": 0.211, "d22": 4.208, "d64": 4.747, "eta": 172.251, "theta": -133.979, "eta_prime": -174.601, "theta_prime": -141.337, "eta_base": -137.829, "theta_base": -122.296, "v0": -0.967, "v1": -21.307, "v2": 34.209, "v3": -35.777, "v4": 23.155, "amplitude": 36.435, "phase_angle": 20.130, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.601, "filter_rmsd": 0.060, "frame": { "rmsd": 0.006, "origin": [ 217.064, 219.524, 248.595 ], "x_axis": [ 0.361, 0.142, 0.922 ], "y_axis": [ -0.391, 0.920, 0.011 ], "z_axis": [ -0.847, -0.365, 0.387 ], "quaternion": [ 0.817, 0.115, -0.541, 0.163 ] } }, { "index": 1482, "index_chain": 1482, "chain_name": "A", "nt_resnum": 1560, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1560", "linked_nts": [ "///A/1559", "///A/1561" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,internal-loop", "alpha": 124.444, "beta": -125.871, "gamma": -174.176, "delta": 80.758, "epsilon": -108.617, "zeta": -26.325, "epsilon_zeta": -82.293, "bb_type": "--", "chi": 171.375, "glyco_bond": "anti", "C5prime_xyz": [ -1.372, 8.042, 2.141 ], "P_xyz": [ 0.254, 9.674, 0.917 ], "form": ".", "ssZp": 4.849, "Dp": 4.834, "splay_angle": 30.054, "splay_distance": 4.661, "splay_ratio": 0.264, "d22": null, "d64": null, "eta": 164.451, "theta": -124.112, "eta_prime": 176.629, "theta_prime": -139.100, "eta_base": -145.916, "theta_base": -90.016, "v0": 6.946, "v1": -29.180, "v2": 39.177, "v3": -36.180, "v4": 18.416, "amplitude": 39.634, "phase_angle": 8.709, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.099, "frame": { "rmsd": 0.007, "origin": [ 214.915, 216.784, 250.510 ], "x_axis": [ 0.205, 0.527, 0.825 ], "y_axis": [ -0.503, 0.780, -0.373 ], "z_axis": [ -0.840, -0.338, 0.425 ], "quaternion": [ 0.776, -0.011, -0.536, 0.332 ] } }, { "index": 1483, "index_chain": 1483, "chain_name": "A", "nt_resnum": 1561, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1561", "linked_nts": [ "///A/1560", "///A/1562" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-pair-contact,internal-loop", "alpha": -107.140, "beta": 79.203, "gamma": -160.535, "delta": 81.083, "epsilon": -110.414, "zeta": -58.325, "epsilon_zeta": -52.088, "bb_type": "--", "chi": -27.710, "glyco_bond": "--", "C5prime_xyz": [ -4.698, 4.643, -2.692 ], "P_xyz": [ -7.246, 5.211, -2.537 ], "form": ".", "ssZp": -4.343, "Dp": 4.626, "splay_angle": 53.309, "splay_distance": 7.950, "splay_ratio": 0.453, "d22": null, "d64": null, "eta": -158.208, "theta": 175.331, "eta_prime": -155.008, "theta_prime": 169.585, "eta_base": -87.191, "theta_base": 176.225, "v0": -2.017, "v1": -20.946, "v2": 34.547, "v3": -36.721, "v4": 24.439, "amplitude": 37.172, "phase_angle": 21.662, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 213.121, 217.515, 254.748 ], "x_axis": [ 0.446, -0.679, 0.584 ], "y_axis": [ -0.093, -0.684, -0.724 ], "z_axis": [ 0.890, 0.268, -0.368 ], "quaternion": [ -0.314, 0.790, -0.244, 0.466 ] } }, { "index": 1484, "index_chain": 1484, "chain_name": "A", "nt_resnum": 1562, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1562", "linked_nts": [ "///A/1561", "///A/1563" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop", "alpha": -159.758, "beta": 95.367, "gamma": 169.672, "delta": 83.385, "epsilon": -141.383, "zeta": 0.269, "epsilon_zeta": 218.348, "bb_type": "--", "chi": 4.796, "glyco_bond": "syn", "C5prime_xyz": [ -5.270, 3.659, -1.373 ], "P_xyz": [ -7.405, 3.401, 0.108 ], "form": ".", "ssZp": -4.549, "Dp": 4.560, "splay_angle": 29.567, "splay_distance": 4.565, "splay_ratio": 0.256, "d22": null, "d64": null, "eta": 153.756, "theta": -136.526, "eta_prime": 158.729, "theta_prime": -115.334, "eta_base": 153.565, "theta_base": -86.292, "v0": 0.147, "v1": -21.247, "v2": 32.978, "v3": -33.868, "v4": 21.355, "amplitude": 34.762, "phase_angle": 18.433, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.010, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 211.872, 209.665, 254.594 ], "x_axis": [ 0.513, -0.749, 0.418 ], "y_axis": [ -0.296, -0.612, -0.734 ], "z_axis": [ 0.806, 0.253, -0.536 ], "quaternion": [ -0.302, 0.816, -0.320, 0.375 ] } }, { "index": 1485, "index_chain": 1485, "chain_name": "A", "nt_resnum": 1563, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1563", "linked_nts": [ "///A/1562", "///A/1564" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -136.388, "beta": 148.693, "gamma": 105.076, "delta": 84.801, "epsilon": -142.980, "zeta": -64.243, "epsilon_zeta": -78.738, "bb_type": "BI", "chi": 174.236, "glyco_bond": "anti", "C5prime_xyz": [ -1.221, 8.032, 1.975 ], "P_xyz": [ 1.004, 8.987, 0.986 ], "form": "A", "ssZp": 4.737, "Dp": 4.750, "splay_angle": 27.260, "splay_distance": 4.057, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": 135.155, "theta": -136.944, "eta_prime": -169.585, "theta_prime": -140.535, "eta_base": -101.010, "theta_base": -105.835, "v0": 10.312, "v1": -30.587, "v2": 38.133, "v3": -33.254, "v4": 14.528, "amplitude": 38.198, "phase_angle": 3.357, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 208.953, 211.923, 257.282 ], "x_axis": [ -0.466, 0.813, -0.349 ], "y_axis": [ -0.380, -0.540, -0.751 ], "z_axis": [ -0.799, -0.218, 0.560 ], "quaternion": [ 0.372, -0.358, -0.302, 0.801 ] } }, { "index": 1486, "index_chain": 1486, "chain_name": "A", "nt_resnum": 1564, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1564", "linked_nts": [ "///A/1563", "///A/1565" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -73.721, "beta": -169.351, "gamma": 56.026, "delta": 86.218, "epsilon": -159.779, "zeta": -77.392, "epsilon_zeta": -82.388, "bb_type": "BI", "chi": -164.684, "glyco_bond": "anti", "C5prime_xyz": [ -0.987, 8.582, 0.860 ], "P_xyz": [ 1.539, 8.573, 1.585 ], "form": ".", "ssZp": 4.437, "Dp": 4.509, "splay_angle": 27.271, "splay_distance": 4.217, "splay_ratio": 0.236, "d22": 5.010, "d64": 4.870, "eta": 170.569, "theta": -153.461, "eta_prime": -171.399, "theta_prime": -152.066, "eta_base": -116.230, "theta_base": -144.625, "v0": 4.829, "v1": -24.298, "v2": 33.448, "v3": -31.590, "v4": 16.916, "amplitude": 34.035, "phase_angle": 10.662, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.782, "filter_rmsd": 0.064, "frame": { "rmsd": 0.008, "origin": [ 205.897, 213.615, 259.343 ], "x_axis": [ -0.556, 0.123, -0.822 ], "y_axis": [ 0.111, -0.969, -0.220 ], "z_axis": [ -0.824, -0.214, 0.525 ], "quaternion": [ 0.004, -0.471, -0.124, 0.873 ] } }, { "index": 1487, "index_chain": 1487, "chain_name": "A", "nt_resnum": 1565, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1565", "linked_nts": [ "///A/1564", "///A/1566" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-canonical,internal-loop", "alpha": -85.273, "beta": -171.751, "gamma": 59.828, "delta": 83.437, "epsilon": -153.069, "zeta": -63.672, "epsilon_zeta": -89.397, "bb_type": "BI", "chi": -167.028, "glyco_bond": "anti", "C5prime_xyz": [ -1.271, 8.582, 0.946 ], "P_xyz": [ 1.287, 8.810, 1.477 ], "form": ".", "ssZp": 4.549, "Dp": 4.610, "splay_angle": 13.845, "splay_distance": 2.102, "splay_ratio": 0.121, "d22": null, "d64": null, "eta": 166.066, "theta": -138.208, "eta_prime": 172.039, "theta_prime": -136.552, "eta_base": -170.727, "theta_base": -87.829, "v0": 3.803, "v1": -24.986, "v2": 35.466, "v3": -34.207, "v4": 19.171, "amplitude": 36.355, "phase_angle": 12.695, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.567, "filter_rmsd": 0.105, "frame": { "rmsd": 0.006, "origin": [ 203.647, 214.497, 262.799 ], "x_axis": [ -0.269, -0.180, -0.946 ], "y_axis": [ 0.324, -0.942, 0.087 ], "z_axis": [ -0.907, -0.283, 0.312 ], "quaternion": [ -0.159, -0.583, -0.062, 0.794 ] } }, { "index": 1488, "index_chain": 1488, "chain_name": "A", "nt_resnum": 1566, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1566", "linked_nts": [ "///A/1565", "///A/1567" ], "nt_type": "RNA", "dbn": ")", "summary": "~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": -69.723, "beta": -175.209, "gamma": 62.250, "delta": 78.110, "epsilon": -142.290, "zeta": -50.963, "epsilon_zeta": -91.327, "bb_type": "BI", "chi": -89.502, "glyco_bond": "--", "C5prime_xyz": [ -2.710, 7.390, -2.985 ], "P_xyz": [ -0.931, 7.195, -4.899 ], "form": ".", "ssZp": 0.001, "Dp": 4.634, "splay_angle": 33.283, "splay_distance": 5.674, "splay_ratio": 0.287, "d22": null, "d64": null, "eta": 179.044, "theta": -127.548, "eta_prime": -167.762, "theta_prime": -125.972, "eta_base": -110.578, "theta_base": -108.507, "v0": -2.192, "v1": -21.493, "v2": 35.656, "v3": -37.876, "v4": 25.230, "amplitude": 38.392, "phase_angle": 21.761, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.806, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 201.733, 214.064, 262.046 ], "x_axis": [ -0.701, -0.434, -0.566 ], "y_axis": [ -0.388, -0.434, 0.813 ], "z_axis": [ -0.599, 0.789, 0.136 ], "quaternion": [ -0.015, -0.386, 0.532, 0.754 ] } }, { "index": 1489, "index_chain": 1489, "chain_name": "A", "nt_resnum": 1567, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1567", "linked_nts": [ "///A/1566", "///A/1568" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -104.298, "beta": 152.154, "gamma": 107.352, "delta": 79.531, "epsilon": -139.842, "zeta": -55.991, "epsilon_zeta": -83.851, "bb_type": "BI", "chi": -157.922, "glyco_bond": "anti", "C5prime_xyz": [ -1.715, 8.765, 0.358 ], "P_xyz": [ 0.086, 9.691, -1.300 ], "form": ".", "ssZp": 4.304, "Dp": 4.663, "splay_angle": 43.524, "splay_distance": 6.274, "splay_ratio": 0.384, "d22": null, "d64": null, "eta": 164.907, "theta": -132.965, "eta_prime": -167.723, "theta_prime": -137.106, "eta_base": -137.100, "theta_base": -67.097, "v0": 0.723, "v1": -23.907, "v2": 36.705, "v3": -37.267, "v4": 23.019, "amplitude": 38.490, "phase_angle": 17.518, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.010, "origin": [ 196.476, 212.052, 261.334 ], "x_axis": [ 0.133, -0.967, -0.216 ], "y_axis": [ 0.080, -0.207, 0.975 ], "z_axis": [ -0.988, -0.147, 0.049 ], "quaternion": [ 0.494, 0.568, -0.391, -0.530 ] } }, { "index": 1490, "index_chain": 1490, "chain_name": "A", "nt_resnum": 1568, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1568", "linked_nts": [ "///A/1567", "///A/1569" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -67.588, "beta": 177.009, "gamma": 55.412, "delta": 77.743, "epsilon": -153.133, "zeta": 46.255, "epsilon_zeta": 160.612, "bb_type": "--", "chi": 46.509, "glyco_bond": "syn", "C5prime_xyz": [ -5.795, 4.818, 0.994 ], "P_xyz": [ -6.704, 2.431, 1.551 ], "form": "Z", "ssZp": -3.405, "Dp": 4.178, "splay_angle": 18.706, "splay_distance": 2.983, "splay_ratio": 0.167, "d22": null, "d64": null, "eta": 164.665, "theta": -27.969, "eta_prime": -174.062, "theta_prime": -62.508, "eta_base": -84.658, "theta_base": -151.509, "v0": -14.039, "v1": -10.122, "v2": 28.803, "v3": -37.835, "v4": 32.710, "amplitude": 37.616, "phase_angle": 40.030, "puckering": "C4'-exo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.800, "filter_rmsd": 0.025, "frame": { "rmsd": 0.025, "origin": [ 194.858, 207.231, 265.009 ], "x_axis": [ 0.443, -0.394, -0.805 ], "y_axis": [ -0.304, 0.779, -0.548 ], "z_axis": [ 0.843, 0.488, 0.226 ], "quaternion": [ 0.782, -0.331, 0.527, -0.029 ] } }, { "index": 1491, "index_chain": 1491, "chain_name": "A", "nt_resnum": 1569, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1569", "linked_nts": [ "///A/1568", "///A/1570" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor,splayed-apart", "alpha": 166.049, "beta": 163.959, "gamma": 44.079, "delta": 149.427, "epsilon": -115.951, "zeta": 116.048, "epsilon_zeta": 128.000, "bb_type": "--", "chi": -135.647, "glyco_bond": "anti", "C5prime_xyz": [ -1.922, 8.641, -0.326 ], "P_xyz": [ 0.336, 9.238, 0.867 ], "form": ".", "ssZp": 1.280, "Dp": 1.280, "splay_angle": 168.582, "splay_distance": 18.486, "splay_ratio": 0.995, "d22": null, "d64": null, "eta": 50.847, "theta": 145.440, "eta_prime": 116.292, "theta_prime": 106.242, "eta_base": 70.445, "theta_base": 51.591, "v0": -21.538, "v1": 36.636, "v2": -36.774, "v3": 25.279, "v4": -2.523, "amplitude": 38.075, "phase_angle": 164.978, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.812, "filter_rmsd": 0.039, "frame": { "rmsd": 0.013, "origin": [ 193.355, 204.941, 263.828 ], "x_axis": [ -0.090, 0.269, -0.959 ], "y_axis": [ -0.670, 0.696, 0.259 ], "z_axis": [ 0.737, 0.666, 0.118 ], "quaternion": [ 0.656, -0.155, 0.646, 0.358 ] } }, { "index": 1492, "index_chain": 1492, "chain_name": "A", "nt_resnum": 1570, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1570", "linked_nts": [ "///A/1569", "///A/1571" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,internal-loop,splayed-apart", "alpha": 60.269, "beta": 149.019, "gamma": 76.056, "delta": 83.526, "epsilon": -173.554, "zeta": 112.674, "epsilon_zeta": 73.772, "bb_type": "--", "chi": -146.302, "glyco_bond": "anti", "C5prime_xyz": [ -1.263, 8.665, -0.295 ], "P_xyz": [ 0.954, 8.555, -1.668 ], "form": ".", "ssZp": 4.063, "Dp": 4.459, "splay_angle": 123.361, "splay_distance": 15.987, "splay_ratio": 0.880, "d22": null, "d64": null, "eta": -23.593, "theta": 18.553, "eta_prime": -15.173, "theta_prime": -5.963, "eta_base": 41.381, "theta_base": 0.109, "v0": 4.497, "v1": -25.750, "v2": 36.030, "v3": -34.428, "v4": 18.911, "amplitude": 36.803, "phase_angle": 11.763, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6d", "suiteness": 0.137, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 185.096, 213.101, 278.213 ], "x_axis": [ 0.009, 0.794, -0.607 ], "y_axis": [ 0.369, -0.567, -0.736 ], "z_axis": [ -0.929, -0.217, -0.298 ], "quaternion": [ -0.190, 0.685, 0.425, -0.561 ] } }, { "index": 1493, "index_chain": 1493, "chain_name": "A", "nt_resnum": 1571, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1571", "linked_nts": [ "///A/1570", "///A/1572" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-acceptor,splayed-apart", "alpha": -138.319, "beta": 165.654, "gamma": 62.375, "delta": 83.100, "epsilon": -148.891, "zeta": -122.270, "epsilon_zeta": -26.621, "bb_type": "--", "chi": 175.092, "glyco_bond": "anti", "C5prime_xyz": [ -1.786, 8.395, 1.879 ], "P_xyz": [ 0.670, 8.665, 2.715 ], "form": "A", "ssZp": 4.310, "Dp": 4.473, "splay_angle": 21.780, "splay_distance": 3.368, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 135.226, "theta": -150.809, "eta_prime": 176.192, "theta_prime": -139.633, "eta_base": -143.841, "theta_base": -124.601, "v0": -1.639, "v1": -19.940, "v2": 32.595, "v3": -34.501, "v4": 22.824, "amplitude": 34.975, "phase_angle": 21.256, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 190.207, 203.321, 266.645 ], "x_axis": [ 0.644, -0.084, 0.761 ], "y_axis": [ -0.605, 0.552, 0.573 ], "z_axis": [ -0.468, -0.829, 0.304 ], "quaternion": [ 0.791, 0.444, -0.389, 0.165 ] } }, { "index": 1494, "index_chain": 1494, "chain_name": "A", "nt_resnum": 1572, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1572", "linked_nts": [ "///A/1571", "///A/1573" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 32.944, "beta": 118.043, "gamma": 16.791, "delta": 142.266, "epsilon": -168.740, "zeta": -93.736, "epsilon_zeta": -75.004, "bb_type": "BI", "chi": -129.544, "glyco_bond": "anti", "C5prime_xyz": [ -2.157, 8.737, -0.723 ], "P_xyz": [ 0.015, 9.031, 0.711 ], "form": ".", "ssZp": 2.437, "Dp": 2.350, "splay_angle": 22.598, "splay_distance": 4.033, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 172.755, "theta": -109.759, "eta_prime": -157.868, "theta_prime": -133.852, "eta_base": -133.696, "theta_base": -85.521, "v0": -24.751, "v1": 36.523, "v2": -33.600, "v3": 20.119, "v4": 2.796, "amplitude": 36.509, "phase_angle": 156.973, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 189.865, 200.017, 266.087 ], "x_axis": [ 0.300, 0.223, 0.927 ], "y_axis": [ -0.878, 0.444, 0.177 ], "z_axis": [ -0.373, -0.868, 0.329 ], "quaternion": [ 0.720, 0.363, -0.451, 0.382 ] } }, { "index": 1495, "index_chain": 1495, "chain_name": "A", "nt_resnum": 1573, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1573", "linked_nts": [ "///A/1572", "///A/1574" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,phosphate", "alpha": -67.069, "beta": 173.433, "gamma": 39.186, "delta": 78.567, "epsilon": -152.862, "zeta": -79.770, "epsilon_zeta": -73.092, "bb_type": "BI", "chi": -146.367, "glyco_bond": "anti", "C5prime_xyz": [ -2.258, 8.979, -0.432 ], "P_xyz": [ -0.114, 10.434, -0.177 ], "form": ".", "ssZp": 3.785, "Dp": 4.258, "splay_angle": 31.234, "splay_distance": 5.015, "splay_ratio": 0.276, "d22": null, "d64": null, "eta": 156.610, "theta": -158.759, "eta_prime": 169.637, "theta_prime": -151.029, "eta_base": -121.362, "theta_base": -90.874, "v0": -11.705, "v1": -12.257, "v2": 29.964, "v3": -37.593, "v4": 31.140, "amplitude": 37.265, "phase_angle": 36.476, "puckering": "C4'-exo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.011, "origin": [ 189.411, 197.100, 268.835 ], "x_axis": [ -0.425, 0.425, 0.799 ], "y_axis": [ -0.798, 0.242, -0.553 ], "z_axis": [ -0.428, -0.872, 0.236 ], "quaternion": [ 0.513, 0.156, -0.598, 0.596 ] } }, { "index": 1496, "index_chain": 1496, "chain_name": "A", "nt_resnum": 1574, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1574", "linked_nts": [ "///A/1573", "///A/1575" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": -61.738, "beta": 156.006, "gamma": 62.369, "delta": 88.346, "epsilon": -124.643, "zeta": -126.274, "epsilon_zeta": 1.631, "bb_type": "--", "chi": -150.439, "glyco_bond": "anti", "C5prime_xyz": [ -0.947, 8.616, 0.024 ], "P_xyz": [ 1.596, 8.328, -0.591 ], "form": ".", "ssZp": 3.945, "Dp": 4.706, "splay_angle": 49.852, "splay_distance": 7.688, "splay_ratio": 0.424, "d22": null, "d64": null, "eta": 175.349, "theta": -173.551, "eta_prime": -167.626, "theta_prime": -163.999, "eta_base": -101.632, "theta_base": -155.401, "v0": 7.480, "v1": -25.970, "v2": 33.591, "v3": -30.181, "v4": 14.424, "amplitude": 33.786, "phase_angle": 6.159, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.678, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 185.054, 195.338, 270.582 ], "x_axis": [ -0.888, 0.460, 0.007 ], "y_axis": [ -0.146, -0.267, -0.952 ], "z_axis": [ -0.437, -0.847, 0.305 ], "quaternion": [ 0.193, -0.137, -0.573, 0.784 ] } }, { "index": 1497, "index_chain": 1497, "chain_name": "A", "nt_resnum": 1575, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1575", "linked_nts": [ "///A/1574", "///A/1576" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -58.079, "beta": 166.125, "gamma": 55.146, "delta": 88.150, "epsilon": -136.269, "zeta": -48.361, "epsilon_zeta": -87.907, "bb_type": "BI", "chi": -149.143, "glyco_bond": "anti", "C5prime_xyz": [ -0.867, 8.584, -0.020 ], "P_xyz": [ 1.759, 8.451, -0.152 ], "form": ".", "ssZp": 3.971, "Dp": 4.630, "splay_angle": 41.711, "splay_distance": 6.659, "splay_ratio": 0.356, "d22": null, "d64": null, "eta": -168.228, "theta": -105.656, "eta_prime": -175.032, "theta_prime": -99.795, "eta_base": -176.512, "theta_base": -63.190, "v0": 6.302, "v1": -24.878, "v2": 32.951, "v3": -30.194, "v4": 15.159, "amplitude": 33.271, "phase_angle": 7.956, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.680, "filter_rmsd": 0.041, "frame": { "rmsd": 0.013, "origin": [ 183.989, 187.943, 272.395 ], "x_axis": [ -0.643, 0.753, -0.140 ], "y_axis": [ 0.129, -0.074, -0.989 ], "z_axis": [ -0.755, -0.654, -0.050 ], "quaternion": [ 0.242, -0.347, -0.636, 0.645 ] } }, { "index": 1498, "index_chain": 1498, "chain_name": "A", "nt_resnum": 1576, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1576", "linked_nts": [ "///A/1575", "///A/1577" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -68.957, "beta": 159.778, "gamma": 74.210, "delta": 81.994, "epsilon": -177.539, "zeta": -81.179, "epsilon_zeta": -96.360, "bb_type": "BI", "chi": -154.644, "glyco_bond": "anti", "C5prime_xyz": [ -1.500, 8.825, 0.217 ], "P_xyz": [ 0.985, 9.211, -0.509 ], "form": "A", "ssZp": 4.156, "Dp": 4.309, "splay_angle": 21.331, "splay_distance": 3.515, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 164.876, "theta": -136.981, "eta_prime": -150.653, "theta_prime": -151.093, "eta_base": -85.175, "theta_base": -129.737, "v0": -0.004, "v1": -21.887, "v2": 34.259, "v3": -35.210, "v4": 22.220, "amplitude": 36.153, "phase_angle": 18.631, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.240, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 178.587, 189.431, 268.796 ], "x_axis": [ -0.160, 0.349, -0.923 ], "y_axis": [ 0.512, -0.770, -0.380 ], "z_axis": [ -0.844, -0.534, -0.055 ], "quaternion": [ -0.060, -0.645, -0.334, 0.685 ] } }, { "index": 1499, "index_chain": 1499, "chain_name": "A", "nt_resnum": 1577, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1577", "linked_nts": [ "///A/1576", "///A/1578" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": 162.248, "beta": -146.948, "gamma": 162.361, "delta": 82.409, "epsilon": -103.209, "zeta": -49.228, "epsilon_zeta": -53.982, "bb_type": "--", "chi": -178.735, "glyco_bond": "anti", "C5prime_xyz": [ -1.407, 8.478, 1.619 ], "P_xyz": [ 0.744, 9.611, 0.685 ], "form": ".", "ssZp": 4.511, "Dp": 4.638, "splay_angle": 29.083, "splay_distance": 4.764, "splay_ratio": 0.252, "d22": null, "d64": null, "eta": 172.511, "theta": -117.948, "eta_prime": -176.935, "theta_prime": -125.815, "eta_base": -137.433, "theta_base": -81.786, "v0": 1.708, "v1": -23.179, "v2": 34.622, "v3": -34.631, "v4": 20.747, "amplitude": 36.012, "phase_angle": 15.969, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.435, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 175.097, 189.133, 268.505 ], "x_axis": [ 0.155, -0.064, -0.986 ], "y_axis": [ 0.489, -0.862, 0.133 ], "z_axis": [ -0.858, -0.503, -0.102 ], "quaternion": [ 0.218, 0.728, 0.146, -0.633 ] } }, { "index": 1500, "index_chain": 1500, "chain_name": "A", "nt_resnum": 1578, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1578", "linked_nts": [ "///A/1577", "///A/1579" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -111.618, "beta": 117.186, "gamma": 121.419, "delta": 79.285, "epsilon": -112.352, "zeta": -86.039, "epsilon_zeta": -26.313, "bb_type": "--", "chi": 173.839, "glyco_bond": "anti", "C5prime_xyz": [ -1.175, 8.080, 1.996 ], "P_xyz": [ 0.226, 9.670, 0.475 ], "form": ".", "ssZp": 4.862, "Dp": 4.854, "splay_angle": 66.280, "splay_distance": 10.387, "splay_ratio": 0.556, "d22": null, "d64": null, "eta": 145.950, "theta": 168.436, "eta_prime": 174.417, "theta_prime": 153.874, "eta_base": -113.025, "theta_base": 142.241, "v0": 9.116, "v1": -31.025, "v2": 40.184, "v3": -36.020, "v4": 16.933, "amplitude": 40.399, "phase_angle": 5.915, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 173.058, 186.835, 264.863 ], "x_axis": [ 0.506, -0.648, -0.569 ], "y_axis": [ 0.153, -0.582, 0.799 ], "z_axis": [ -0.849, -0.491, -0.195 ], "quaternion": [ 0.427, 0.755, -0.164, -0.469 ] } }, { "index": 1501, "index_chain": 1501, "chain_name": "A", "nt_resnum": 1579, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1579", "linked_nts": [ "///A/1578", "///A/1580" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": -95.461, "beta": 61.156, "gamma": 178.261, "delta": 82.452, "epsilon": -101.032, "zeta": -99.031, "epsilon_zeta": -2.002, "bb_type": "--", "chi": 163.457, "glyco_bond": "anti", "C5prime_xyz": [ -1.481, 7.791, 2.507 ], "P_xyz": [ -2.004, 10.168, 1.539 ], "form": "A", "ssZp": 4.752, "Dp": 4.781, "splay_angle": 24.367, "splay_distance": 3.805, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": -153.977, "theta": 158.247, "eta_prime": -178.690, "theta_prime": -175.907, "eta_base": 152.480, "theta_base": -135.423, "v0": 6.447, "v1": -27.621, "v2": 37.147, "v3": -34.477, "v4": 17.694, "amplitude": 37.610, "phase_angle": 8.998, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.070, "filter_rmsd": 0.041, "frame": { "rmsd": 0.012, "origin": [ 164.688, 192.164, 267.935 ], "x_axis": [ 0.324, 0.111, -0.940 ], "y_axis": [ 0.554, -0.827, 0.094 ], "z_axis": [ -0.767, -0.551, -0.329 ], "quaternion": [ 0.205, 0.787, 0.211, -0.542 ] } }, { "index": 1502, "index_chain": 1502, "chain_name": "A", "nt_resnum": 1580, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1580", "linked_nts": [ "///A/1579", "///A/1581" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor", "alpha": -50.097, "beta": 127.625, "gamma": 79.410, "delta": 82.887, "epsilon": -106.000, "zeta": -65.769, "epsilon_zeta": -40.231, "bb_type": "--", "chi": -171.257, "glyco_bond": "anti", "C5prime_xyz": [ -2.032, 8.653, 1.111 ], "P_xyz": [ 0.337, 9.214, 0.164 ], "form": ".", "ssZp": 4.301, "Dp": 4.501, "splay_angle": 80.214, "splay_distance": 10.207, "splay_ratio": 0.669, "d22": null, "d64": null, "eta": -179.369, "theta": -103.530, "eta_prime": -158.107, "theta_prime": -94.397, "eta_base": -115.196, "theta_base": -33.298, "v0": -4.023, "v1": -18.199, "v2": 32.073, "v3": -35.317, "v4": 24.824, "amplitude": 35.380, "phase_angle": 24.970, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.455, "filter_rmsd": 0.037, "frame": { "rmsd": 0.010, "origin": [ 161.731, 191.945, 265.550 ], "x_axis": [ 0.295, -0.507, -0.810 ], "y_axis": [ 0.154, -0.811, 0.564 ], "z_axis": [ -0.943, -0.291, -0.161 ], "quaternion": [ 0.284, 0.753, -0.117, -0.582 ] } }, { "index": 1503, "index_chain": 1503, "chain_name": "A", "nt_resnum": 1581, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1581", "linked_nts": [ "///A/1580", "///A/1582" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-pair-contact,hairpin-loop,ribose-zipper,cap-acceptor", "alpha": -54.356, "beta": 144.544, "gamma": 74.790, "delta": 149.498, "epsilon": -9.641, "zeta": 170.789, "epsilon_zeta": 179.570, "bb_type": "--", "chi": 81.297, "glyco_bond": "syn", "C5prime_xyz": [ -5.044, 4.754, 2.096 ], "P_xyz": [ -4.394, 2.396, 3.019 ], "form": ".", "ssZp": 0.185, "Dp": 1.113, "splay_angle": 69.556, "splay_distance": 11.322, "splay_ratio": 0.571, "d22": null, "d64": null, "eta": -83.054, "theta": 156.560, "eta_prime": -98.210, "theta_prime": -178.243, "eta_base": -37.543, "theta_base": 151.731, "v0": -24.065, "v1": 38.853, "v2": -37.899, "v3": 24.987, "v4": -0.755, "amplitude": 39.778, "phase_angle": 162.322, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.107, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 160.484, 182.432, 269.032 ], "x_axis": [ 0.886, -0.138, -0.442 ], "y_axis": [ -0.100, 0.874, -0.475 ], "z_axis": [ 0.452, 0.465, 0.761 ], "quaternion": [ 0.938, -0.250, 0.238, -0.010 ] } }, { "index": 1504, "index_chain": 1504, "chain_name": "A", "nt_resnum": 1582, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1582", "linked_nts": [ "///A/1581", "///A/1583" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,hairpin-loop,ribose-zipper", "alpha": -97.711, "beta": 115.188, "gamma": -46.693, "delta": 145.986, "epsilon": -157.503, "zeta": -168.947, "epsilon_zeta": 11.444, "bb_type": "--", "chi": -79.295, "glyco_bond": "anti", "C5prime_xyz": [ -2.869, 7.301, -2.805 ], "P_xyz": [ -1.847, 9.700, -2.894 ], "form": ".", "ssZp": 1.659, "Dp": 2.046, "splay_angle": 72.873, "splay_distance": 10.068, "splay_ratio": 0.622, "d22": null, "d64": null, "eta": 64.064, "theta": -159.450, "eta_prime": 92.258, "theta_prime": 164.633, "eta_base": 82.002, "theta_base": 89.763, "v0": -22.763, "v1": 36.092, "v2": -34.908, "v3": 22.602, "v4": -0.106, "amplitude": 36.831, "phase_angle": 161.404, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.006, "origin": [ 162.956, 188.694, 259.929 ], "x_axis": [ 0.783, -0.229, 0.579 ], "y_axis": [ -0.615, -0.143, 0.775 ], "z_axis": [ -0.095, -0.963, -0.253 ], "quaternion": [ 0.589, 0.738, -0.286, 0.164 ] } }, { "index": 1505, "index_chain": 1505, "chain_name": "A", "nt_resnum": 1583, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1583", "linked_nts": [ "///A/1582", "///A/1584" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,BI,non-stack,non-pair-contact,hairpin-loop,ribose-zipper,phosphate,splayed-apart", "alpha": 131.129, "beta": -106.690, "gamma": 63.568, "delta": 143.725, "epsilon": -146.950, "zeta": -32.584, "epsilon_zeta": -114.366, "bb_type": "BI", "chi": 67.576, "glyco_bond": "syn", "C5prime_xyz": [ -5.375, 4.272, 1.533 ], "P_xyz": [ -5.820, 2.223, -0.048 ], "form": ".", "ssZp": -2.048, "Dp": 1.988, "splay_angle": 114.493, "splay_distance": 14.881, "splay_ratio": 0.843, "d22": null, "d64": null, "eta": 66.716, "theta": -31.019, "eta_prime": 73.487, "theta_prime": -46.014, "eta_base": 37.241, "theta_base": -13.888, "v0": -25.133, "v1": 37.600, "v2": -34.961, "v3": 21.352, "v4": 2.161, "amplitude": 37.715, "phase_angle": 157.968, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 153.388, 191.806, 259.570 ], "x_axis": [ 0.074, 0.530, -0.844 ], "y_axis": [ 0.363, -0.803, -0.473 ], "z_axis": [ -0.929, -0.272, -0.252 ], "quaternion": [ -0.069, 0.730, 0.306, -0.608 ] } }, { "index": 1506, "index_chain": 1506, "chain_name": "A", "nt_resnum": 1584, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1584", "linked_nts": [ "///A/1583", "///A/1585" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -114.985, "beta": -100.959, "gamma": 78.821, "delta": 148.686, "epsilon": -148.081, "zeta": 67.141, "epsilon_zeta": 144.777, "bb_type": "--", "chi": -157.133, "glyco_bond": "anti", "C5prime_xyz": [ -1.624, 8.539, 0.865 ], "P_xyz": [ -0.454, 7.401, 2.930 ], "form": ".", "ssZp": 1.510, "Dp": 1.809, "splay_angle": 129.721, "splay_distance": 16.669, "splay_ratio": 0.905, "d22": null, "d64": null, "eta": -172.368, "theta": 74.828, "eta_prime": -121.239, "theta_prime": 53.730, "eta_base": -130.235, "theta_base": 77.247, "v0": -17.387, "v1": 32.869, "v2": -34.959, "v3": 25.829, "v4": -5.495, "amplitude": 35.496, "phase_angle": 170.020, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.005, "origin": [ 156.717, 180.488, 268.640 ], "x_axis": [ -0.945, 0.321, 0.063 ], "y_axis": [ 0.176, 0.663, -0.728 ], "z_axis": [ -0.275, -0.677, -0.683 ], "quaternion": [ -0.093, 0.137, 0.907, -0.387 ] } }, { "index": 1507, "index_chain": 1507, "chain_name": "A", "nt_resnum": 1585, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1585", "linked_nts": [ "///A/1584", "///A/1586" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-stack,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,phosphate,splayed-apart", "alpha": -137.745, "beta": -146.264, "gamma": 59.151, "delta": 82.271, "epsilon": -161.900, "zeta": -65.566, "epsilon_zeta": -96.334, "bb_type": "BI", "chi": -166.444, "glyco_bond": "anti", "C5prime_xyz": [ -1.231, 8.557, 0.909 ], "P_xyz": [ 1.172, 8.625, 1.946 ], "form": ".", "ssZp": 4.527, "Dp": 4.575, "splay_angle": 67.572, "splay_distance": 9.033, "splay_ratio": 0.558, "d22": null, "d64": null, "eta": 152.564, "theta": -96.495, "eta_prime": 169.479, "theta_prime": -80.662, "eta_base": 162.318, "theta_base": -30.684, "v0": 5.236, "v1": -26.485, "v2": 36.520, "v3": -34.496, "v4": 18.476, "amplitude": 37.167, "phase_angle": 10.707, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6g", "suiteness": 0.027, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 167.316, 189.736, 259.695 ], "x_axis": [ -0.363, 0.310, 0.879 ], "y_axis": [ -0.566, -0.822, 0.057 ], "z_axis": [ 0.740, -0.477, 0.474 ], "quaternion": [ 0.269, 0.496, -0.129, 0.815 ] } }, { "index": 1508, "index_chain": 1508, "chain_name": "A", "nt_resnum": 1586, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1586", "linked_nts": [ "///A/1585", "///A/1587" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor", "alpha": 144.873, "beta": -100.712, "gamma": 163.631, "delta": 83.763, "epsilon": -170.180, "zeta": -89.406, "epsilon_zeta": -80.774, "bb_type": "BI", "chi": -111.552, "glyco_bond": "anti", "C5prime_xyz": [ -1.540, 8.029, -2.156 ], "P_xyz": [ -1.048, 6.371, -4.127 ], "form": ".", "ssZp": 2.320, "Dp": 4.471, "splay_angle": 24.170, "splay_distance": 3.956, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 159.930, "theta": -163.381, "eta_prime": -129.416, "theta_prime": 165.961, "eta_base": -48.031, "theta_base": 144.374, "v0": 7.461, "v1": -27.773, "v2": 36.483, "v3": -33.099, "v4": 16.211, "amplitude": 36.768, "phase_angle": 7.145, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 164.411, 183.660, 265.715 ], "x_axis": [ 0.372, -0.668, 0.645 ], "y_axis": [ 0.863, -0.006, -0.505 ], "z_axis": [ 0.341, 0.744, 0.574 ], "quaternion": [ 0.696, -0.448, -0.109, -0.550 ] } }, { "index": 1509, "index_chain": 1509, "chain_name": "A", "nt_resnum": 1587, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1587", "linked_nts": [ "///A/1586", "///A/1588" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": -55.110, "beta": 158.253, "gamma": 53.089, "delta": 83.880, "epsilon": 171.991, "zeta": -85.072, "epsilon_zeta": -102.937, "bb_type": "BI", "chi": -124.316, "glyco_bond": "anti", "C5prime_xyz": [ -1.583, 8.437, -1.559 ], "P_xyz": [ 0.891, 8.421, -2.446 ], "form": ".", "ssZp": 3.063, "Dp": 4.156, "splay_angle": 43.035, "splay_distance": 6.818, "splay_ratio": 0.369, "d22": null, "d64": null, "eta": 164.556, "theta": -140.158, "eta_prime": 174.636, "theta_prime": -147.668, "eta_base": 173.213, "theta_base": -122.021, "v0": 2.094, "v1": -22.391, "v2": 33.091, "v3": -32.769, "v4": 19.417, "amplitude": 34.293, "phase_angle": 15.216, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.716, "filter_rmsd": 0.104, "frame": { "rmsd": 0.006, "origin": [ 165.129, 187.547, 265.880 ], "x_axis": [ 0.354, -0.730, 0.585 ], "y_axis": [ 0.912, 0.131, -0.389 ], "z_axis": [ 0.207, 0.671, 0.712 ], "quaternion": [ 0.741, -0.357, -0.127, -0.554 ] } }, { "index": 1510, "index_chain": 1510, "chain_name": "A", "nt_resnum": 1588, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1588", "linked_nts": [ "///A/1587", "///A/1589" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor", "alpha": 169.719, "beta": -129.341, "gamma": 151.972, "delta": 81.878, "epsilon": -124.520, "zeta": -32.563, "epsilon_zeta": -91.957, "bb_type": "--", "chi": 163.210, "glyco_bond": "anti", "C5prime_xyz": [ -1.769, 7.879, 2.493 ], "P_xyz": [ 0.690, 8.632, 1.994 ], "form": ".", "ssZp": 4.585, "Dp": 4.723, "splay_angle": 42.185, "splay_distance": 6.556, "splay_ratio": 0.367, "d22": null, "d64": null, "eta": 171.603, "theta": -88.954, "eta_prime": -170.903, "theta_prime": -94.959, "eta_base": -126.896, "theta_base": -43.547, "v0": 3.447, "v1": -24.992, "v2": 35.883, "v3": -34.843, "v4": 19.802, "amplitude": 36.880, "phase_angle": 13.349, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.023, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 168.790, 190.565, 270.776 ], "x_axis": [ 0.582, -0.813, -0.013 ], "y_axis": [ 0.234, 0.183, -0.955 ], "z_axis": [ 0.779, 0.552, 0.297 ], "quaternion": [ 0.718, -0.525, 0.276, -0.365 ] } }, { "index": 1511, "index_chain": 1511, "chain_name": "A", "nt_resnum": 1589, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1589", "linked_nts": [ "///A/1588", "///A/1590" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,cap-donor", "alpha": -85.929, "beta": -171.767, "gamma": 44.366, "delta": 82.604, "epsilon": -156.486, "zeta": -70.288, "epsilon_zeta": -86.198, "bb_type": "BI", "chi": -160.680, "glyco_bond": "anti", "C5prime_xyz": [ -1.611, 8.793, 0.567 ], "P_xyz": [ 0.732, 9.471, 1.524 ], "form": "A", "ssZp": 4.331, "Dp": 4.479, "splay_angle": 19.408, "splay_distance": 3.198, "splay_ratio": 0.171, "d22": null, "d64": null, "eta": 138.751, "theta": -149.755, "eta_prime": 176.819, "theta_prime": -147.547, "eta_base": -91.782, "theta_base": -121.399, "v0": -0.854, "v1": -20.849, "v2": 33.354, "v3": -34.777, "v4": 22.480, "amplitude": 35.483, "phase_angle": 19.951, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.100, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 174.701, 188.703, 268.638 ], "x_axis": [ 0.137, -0.041, -0.990 ], "y_axis": [ -0.519, 0.848, -0.107 ], "z_axis": [ 0.844, 0.528, 0.095 ], "quaternion": [ 0.721, -0.220, 0.636, 0.165 ] } }, { "index": 1512, "index_chain": 1512, "chain_name": "A", "nt_resnum": 1590, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1590", "linked_nts": [ "///A/1589", "///A/1591" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -66.809, "beta": 169.129, "gamma": 58.987, "delta": 80.967, "epsilon": -126.956, "zeta": -78.558, "epsilon_zeta": -48.398, "bb_type": "--", "chi": -158.495, "glyco_bond": "anti", "C5prime_xyz": [ -1.671, 8.884, 0.387 ], "P_xyz": [ 0.854, 9.574, 0.449 ], "form": ".", "ssZp": 4.155, "Dp": 4.563, "splay_angle": 30.341, "splay_distance": 4.890, "splay_ratio": 0.262, "d22": null, "d64": null, "eta": 173.873, "theta": -137.004, "eta_prime": -174.914, "theta_prime": -133.144, "eta_base": -139.782, "theta_base": -90.749, "v0": -3.687, "v1": -18.789, "v2": 32.779, "v3": -35.831, "v4": 24.910, "amplitude": 35.977, "phase_angle": 24.342, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.910, "filter_rmsd": 0.058, "frame": { "rmsd": 0.008, "origin": [ 177.891, 188.891, 268.519 ], "x_axis": [ -0.156, 0.379, -0.912 ], "y_axis": [ -0.416, 0.813, 0.408 ], "z_axis": [ 0.896, 0.443, 0.031 ], "quaternion": [ 0.650, -0.013, 0.696, 0.306 ] } }, { "index": 1513, "index_chain": 1513, "chain_name": "A", "nt_resnum": 1591, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1591", "linked_nts": [ "///A/1590", "///A/1592" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -70.801, "beta": 143.648, "gamma": 80.846, "delta": 81.556, "epsilon": -153.754, "zeta": -139.422, "epsilon_zeta": -14.332, "bb_type": "--", "chi": -163.766, "glyco_bond": "anti", "C5prime_xyz": [ -1.397, 8.720, 0.717 ], "P_xyz": [ 0.915, 9.121, -0.434 ], "form": ".", "ssZp": 4.499, "Dp": 4.600, "splay_angle": 69.233, "splay_distance": 10.276, "splay_ratio": 0.568, "d22": null, "d64": null, "eta": 162.776, "theta": 148.447, "eta_prime": -170.511, "theta_prime": 149.685, "eta_base": -109.525, "theta_base": 157.796, "v0": 1.343, "v1": -23.395, "v2": 35.242, "v3": -35.508, "v4": 21.585, "amplitude": 36.776, "phase_angle": 16.610, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.059, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 180.648, 192.364, 266.455 ], "x_axis": [ -0.415, 0.834, -0.363 ], "y_axis": [ -0.122, 0.344, 0.931 ], "z_axis": [ 0.902, 0.430, -0.041 ], "quaternion": [ 0.471, 0.265, 0.671, 0.507 ] } }, { "index": 1514, "index_chain": 1514, "chain_name": "A", "nt_resnum": 1592, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1592", "linked_nts": [ "///A/1591", "///A/1593" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,A-minor,ribose-zipper,phosphate", "alpha": -49.613, "beta": 160.127, "gamma": 55.624, "delta": 82.751, "epsilon": -107.754, "zeta": -95.464, "epsilon_zeta": -12.290, "bb_type": "--", "chi": 178.105, "glyco_bond": "anti", "C5prime_xyz": [ -1.887, 8.479, 1.706 ], "P_xyz": [ 0.557, 8.847, 2.576 ], "form": ".", "ssZp": 4.384, "Dp": 4.477, "splay_angle": 21.422, "splay_distance": 3.379, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": -157.358, "theta": -134.221, "eta_prime": -173.566, "theta_prime": -130.981, "eta_base": 166.998, "theta_base": -81.858, "v0": -3.254, "v1": -18.438, "v2": 31.746, "v3": -34.558, "v4": 23.837, "amplitude": 34.712, "phase_angle": 23.858, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.848, "filter_rmsd": 0.043, "frame": { "rmsd": 0.009, "origin": [ 189.371, 187.585, 269.036 ], "x_axis": [ -0.603, 0.250, -0.757 ], "y_axis": [ -0.598, 0.487, 0.637 ], "z_axis": [ 0.528, 0.837, -0.144 ], "quaternion": [ 0.430, -0.116, 0.747, 0.493 ] } }, { "index": 1515, "index_chain": 1515, "chain_name": "A", "nt_resnum": 1593, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1593", "linked_nts": [ "///A/1592", "///A/1594" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,ribose-zipper", "alpha": -62.024, "beta": 134.613, "gamma": 64.985, "delta": 83.085, "epsilon": -113.436, "zeta": -78.296, "epsilon_zeta": -35.140, "bb_type": "--", "chi": -166.232, "glyco_bond": "anti", "C5prime_xyz": [ -1.592, 8.671, 0.886 ], "P_xyz": [ 0.937, 8.822, 0.281 ], "form": ".", "ssZp": 4.303, "Dp": 4.611, "splay_angle": 38.456, "splay_distance": 6.029, "splay_ratio": 0.330, "d22": null, "d64": null, "eta": 161.025, "theta": -116.455, "eta_prime": -179.411, "theta_prime": -115.041, "eta_base": -116.034, "theta_base": -70.044, "v0": -0.735, "v1": -21.326, "v2": 33.935, "v3": -35.340, "v4": 22.762, "amplitude": 36.058, "phase_angle": 19.756, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.906, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 190.140, 190.566, 267.644 ], "x_axis": [ -0.839, 0.536, -0.094 ], "y_axis": [ 0.059, 0.262, 0.963 ], "z_axis": [ 0.541, 0.802, -0.251 ], "quaternion": [ 0.207, 0.194, 0.767, 0.576 ] } }, { "index": 1516, "index_chain": 1516, "chain_name": "A", "nt_resnum": 1594, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1594", "linked_nts": [ "///A/1593", "///A/1595" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,splayed-apart", "alpha": -54.560, "beta": 142.007, "gamma": 65.404, "delta": 80.807, "epsilon": -126.404, "zeta": 129.955, "epsilon_zeta": 103.641, "bb_type": "--", "chi": -162.364, "glyco_bond": "anti", "C5prime_xyz": [ -1.360, 8.700, 0.649 ], "P_xyz": [ 1.097, 8.847, -0.220 ], "form": ".", "ssZp": 4.404, "Dp": 4.749, "splay_angle": 116.294, "splay_distance": 16.490, "splay_ratio": 0.850, "d22": null, "d64": null, "eta": 162.635, "theta": 94.957, "eta_prime": -167.079, "theta_prime": 72.595, "eta_base": -97.053, "theta_base": 71.883, "v0": 3.027, "v1": -25.525, "v2": 37.118, "v3": -36.387, "v4": 21.016, "amplitude": 38.284, "phase_angle": 14.173, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.847, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 188.877, 196.358, 268.742 ], "x_axis": [ -0.359, 0.465, 0.809 ], "y_axis": [ 0.815, -0.267, 0.515 ], "z_axis": [ 0.456, 0.844, -0.283 ], "quaternion": [ -0.151, 0.546, 0.586, 0.579 ] } }, { "index": 1517, "index_chain": 1517, "chain_name": "A", "nt_resnum": 1595, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1595", "linked_nts": [ "///A/1594", "///A/1596" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,splayed-apart", "alpha": 68.381, "beta": -158.673, "gamma": -175.251, "delta": 74.781, "epsilon": 74.456, "zeta": 76.081, "epsilon_zeta": -1.626, "bb_type": "--", "chi": -171.237, "glyco_bond": "anti", "C5prime_xyz": [ -1.269, 8.504, 1.191 ], "P_xyz": [ -0.026, 10.364, -0.158 ], "form": "A", "ssZp": 3.472, "Dp": 3.449, "splay_angle": 21.471, "splay_distance": 3.772, "splay_ratio": 0.193, "d22": 4.187, "d64": 4.450, "eta": -177.330, "theta": -159.620, "eta_prime": 170.156, "theta_prime": -155.949, "eta_base": 175.330, "theta_base": -122.687, "v0": 6.226, "v1": -29.086, "v2": 39.890, "v3": -37.315, "v4": 19.633, "amplitude": 40.504, "phase_angle": 9.994, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "5n", "suiteness": 0.321, "filter_rmsd": 0.098, "frame": { "rmsd": 0.008, "origin": [ 203.133, 188.076, 268.430 ], "x_axis": [ -0.684, -0.338, -0.647 ], "y_axis": [ -0.502, 0.861, 0.081 ], "z_axis": [ 0.529, 0.380, -0.758 ], "quaternion": [ 0.324, -0.231, 0.909, 0.127 ] } }, { "index": 1518, "index_chain": 1518, "chain_name": "A", "nt_resnum": 1596, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1596", "linked_nts": [ "///A/1595", "///A/1597" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": 57.787, "beta": -160.274, "gamma": -178.205, "delta": 82.608, "epsilon": -150.860, "zeta": -65.134, "epsilon_zeta": -85.726, "bb_type": "BI", "chi": -176.920, "glyco_bond": "anti", "C5prime_xyz": [ -1.293, 8.403, 1.520 ], "P_xyz": [ 0.226, 10.256, 0.448 ], "form": "A", "ssZp": 4.645, "Dp": 4.640, "splay_angle": 25.692, "splay_distance": 3.904, "splay_ratio": 0.225, "d22": 4.153, "d64": 4.303, "eta": 134.888, "theta": -166.241, "eta_prime": 164.676, "theta_prime": -161.003, "eta_base": -141.940, "theta_base": -121.015, "v0": 4.420, "v1": -25.630, "v2": 35.957, "v3": -34.328, "v4": 18.878, "amplitude": 36.735, "phase_angle": 11.819, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.007, "origin": [ 205.069, 187.789, 265.206 ], "x_axis": [ -0.848, 0.197, -0.493 ], "y_axis": [ -0.056, 0.891, 0.451 ], "z_axis": [ 0.528, 0.410, -0.744 ], "quaternion": [ 0.273, 0.038, 0.933, 0.231 ] } }, { "index": 1519, "index_chain": 1519, "chain_name": "A", "nt_resnum": 1597, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1597", "linked_nts": [ "///A/1596", "///A/1598" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end,coaxial-stack,internal-loop", "alpha": -68.417, "beta": 177.762, "gamma": 55.978, "delta": 82.956, "epsilon": -151.250, "zeta": -65.694, "epsilon_zeta": -85.556, "bb_type": "BI", "chi": -172.857, "glyco_bond": "anti", "C5prime_xyz": [ -1.223, 8.546, 1.284 ], "P_xyz": [ 1.316, 8.674, 1.896 ], "form": "A", "ssZp": 4.587, "Dp": 4.610, "splay_angle": 25.109, "splay_distance": 4.016, "splay_ratio": 0.222, "d22": 4.272, "d64": 4.684, "eta": 169.320, "theta": -138.339, "eta_prime": -173.139, "theta_prime": -137.598, "eta_base": -118.863, "theta_base": -113.871, "v0": 2.823, "v1": -24.453, "v2": 35.572, "v3": -34.892, "v4": 20.243, "amplitude": 36.705, "phase_angle": 14.277, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.954, "filter_rmsd": 0.064, "frame": { "rmsd": 0.006, "origin": [ 205.666, 188.313, 261.383 ], "x_axis": [ -0.671, 0.739, -0.053 ], "y_axis": [ 0.491, 0.497, 0.716 ], "z_axis": [ 0.555, 0.454, -0.697 ], "quaternion": [ 0.180, 0.364, 0.846, 0.346 ] } }, { "index": 1520, "index_chain": 1520, "chain_name": "A", "nt_resnum": 1598, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1598", "linked_nts": [ "///A/1597", "///A/1599" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -66.863, "beta": 176.703, "gamma": 56.298, "delta": 80.129, "epsilon": -153.194, "zeta": -65.084, "epsilon_zeta": -88.110, "bb_type": "BI", "chi": -171.262, "glyco_bond": "anti", "C5prime_xyz": [ -1.567, 8.722, 1.157 ], "P_xyz": [ 0.905, 9.241, 1.819 ], "form": "A", "ssZp": 4.518, "Dp": 4.536, "splay_angle": 22.627, "splay_distance": 3.573, "splay_ratio": 0.198, "d22": 3.981, "d64": 3.903, "eta": 169.950, "theta": -142.054, "eta_prime": -173.933, "theta_prime": -140.421, "eta_base": -132.404, "theta_base": -102.034, "v0": -1.959, "v1": -21.113, "v2": 34.826, "v3": -36.903, "v4": 24.503, "amplitude": 37.434, "phase_angle": 21.514, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.962, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 206.066, 189.599, 257.600 ], "x_axis": [ -0.336, 0.856, 0.393 ], "y_axis": [ 0.740, -0.018, 0.672 ], "z_axis": [ 0.582, 0.516, -0.628 ], "quaternion": [ 0.068, 0.572, 0.697, 0.426 ] } }, { "index": 1521, "index_chain": 1521, "chain_name": "A", "nt_resnum": 1599, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1599", "linked_nts": [ "///A/1598", "///A/1600" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -69.165, "beta": 177.866, "gamma": 51.634, "delta": 80.821, "epsilon": -151.086, "zeta": -71.216, "epsilon_zeta": -79.870, "bb_type": "BI", "chi": -165.273, "glyco_bond": "anti", "C5prime_xyz": [ -1.416, 8.677, 0.833 ], "P_xyz": [ 1.103, 9.102, 1.396 ], "form": ".", "ssZp": 4.476, "Dp": 4.593, "splay_angle": 29.015, "splay_distance": 4.408, "splay_ratio": 0.288, "d22": null, "d64": null, "eta": 164.660, "theta": -145.586, "eta_prime": -179.291, "theta_prime": -145.418, "eta_base": -124.206, "theta_base": -64.611, "v0": 1.521, "v1": -23.934, "v2": 36.084, "v3": -36.148, "v4": 21.839, "amplitude": 37.601, "phase_angle": 16.327, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.948, "filter_rmsd": 0.103, "frame": { "rmsd": 0.006, "origin": [ 206.583, 192.475, 255.543 ], "x_axis": [ 0.188, 0.598, 0.779 ], "y_axis": [ 0.788, -0.565, 0.244 ], "z_axis": [ 0.586, 0.568, -0.578 ], "quaternion": [ -0.106, 0.763, 0.454, 0.447 ] } }, { "index": 1522, "index_chain": 1522, "chain_name": "A", "nt_resnum": 1600, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1600", "linked_nts": [ "///A/1599", "///A/1601" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -56.398, "beta": 173.284, "gamma": 51.683, "delta": 75.973, "epsilon": -147.442, "zeta": -73.114, "epsilon_zeta": -74.328, "bb_type": "BI", "chi": 20.829, "glyco_bond": "syn", "C5prime_xyz": [ -5.753, 4.201, -0.486 ], "P_xyz": [ -6.252, 1.673, -0.853 ], "form": ".", "ssZp": -4.351, "Dp": 4.486, "splay_angle": 80.834, "splay_distance": 12.534, "splay_ratio": 0.654, "d22": null, "d64": null, "eta": 173.338, "theta": -174.664, "eta_prime": -175.749, "theta_prime": 173.146, "eta_base": -84.450, "theta_base": 148.892, "v0": -8.092, "v1": -16.791, "v2": 33.838, "v3": -39.537, "v4": 30.008, "amplitude": 39.190, "phase_angle": 30.296, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.880, "filter_rmsd": 0.018, "frame": { "rmsd": 0.018, "origin": [ 210.806, 193.729, 255.704 ], "x_axis": [ -0.589, 0.761, 0.272 ], "y_axis": [ -0.565, -0.147, -0.812 ], "z_axis": [ -0.578, -0.632, 0.517 ], "quaternion": [ 0.442, -0.102, -0.481, 0.751 ] } }, { "index": 1523, "index_chain": 1523, "chain_name": "A", "nt_resnum": 1601, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1601", "linked_nts": [ "///A/1600", "///A/1602" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -106.134, "beta": 94.119, "gamma": 159.884, "delta": 81.998, "epsilon": -137.059, "zeta": -101.154, "epsilon_zeta": -35.905, "bb_type": "BI", "chi": 177.526, "glyco_bond": "anti", "C5prime_xyz": [ -1.777, 8.401, 1.766 ], "P_xyz": [ -1.738, 10.524, 0.233 ], "form": ".", "ssZp": 4.556, "Dp": 4.588, "splay_angle": 74.799, "splay_distance": 11.361, "splay_ratio": 0.610, "d22": null, "d64": null, "eta": -157.045, "theta": 164.198, "eta_prime": -175.947, "theta_prime": 151.337, "eta_base": 164.525, "theta_base": 108.142, "v0": -1.546, "v1": -20.273, "v2": 33.071, "v3": -34.922, "v4": 23.011, "amplitude": 35.440, "phase_angle": 21.067, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.767, "filter_rmsd": 0.040, "frame": { "rmsd": 0.008, "origin": [ 203.374, 197.091, 246.187 ], "x_axis": [ 0.089, 0.722, 0.687 ], "y_axis": [ 0.896, -0.359, 0.261 ], "z_axis": [ 0.435, 0.592, -0.679 ], "quaternion": [ -0.114, 0.729, 0.555, 0.384 ] } }, { "index": 1524, "index_chain": 1524, "chain_name": "A", "nt_resnum": 1602, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1602", "linked_nts": [ "///A/1601", "///A/1603" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-canonical,internal-loop,splayed-apart", "alpha": -169.371, "beta": -163.307, "gamma": 49.737, "delta": 143.099, "epsilon": -98.413, "zeta": -72.707, "epsilon_zeta": -25.706, "bb_type": "--", "chi": -137.641, "glyco_bond": "anti", "C5prime_xyz": [ -2.129, 8.750, -0.350 ], "P_xyz": [ -0.316, 9.886, 1.170 ], "form": ".", "ssZp": 1.038, "Dp": 1.004, "splay_angle": 102.030, "splay_distance": 15.217, "splay_ratio": 0.777, "d22": 8.075, "d64": 9.440, "eta": 83.582, "theta": -47.851, "eta_prime": 102.829, "theta_prime": -69.268, "eta_base": 62.384, "theta_base": -44.877, "v0": -24.341, "v1": 36.625, "v2": -34.184, "v3": 21.007, "v4": 1.898, "amplitude": 36.790, "phase_angle": 158.305, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1z", "suiteness": 0.384, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 203.340, 188.510, 238.742 ], "x_axis": [ 0.468, -0.796, 0.383 ], "y_axis": [ 0.788, 0.572, 0.227 ], "z_axis": [ -0.400, 0.195, 0.895 ], "quaternion": [ 0.857, 0.009, -0.229, -0.462 ] } }, { "index": 1525, "index_chain": 1525, "chain_name": "A", "nt_resnum": 1603, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1603", "linked_nts": [ "///A/1602", "///A/1604" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": -95.038, "beta": -158.531, "gamma": 51.989, "delta": 84.816, "epsilon": -150.987, "zeta": -76.076, "epsilon_zeta": -74.911, "bb_type": "BI", "chi": -162.224, "glyco_bond": "anti", "C5prime_xyz": [ -1.532, 8.775, 0.651 ], "P_xyz": [ 0.681, 9.374, 1.920 ], "form": "A", "ssZp": 4.200, "Dp": 4.373, "splay_angle": 21.048, "splay_distance": 3.415, "splay_ratio": 0.183, "d22": 4.640, "d64": 4.386, "eta": 139.070, "theta": -149.081, "eta_prime": -179.253, "theta_prime": -144.793, "eta_base": -150.929, "theta_base": -118.443, "v0": -2.613, "v1": -17.787, "v2": 30.153, "v3": -32.536, "v4": 22.215, "amplitude": 32.780, "phase_angle": 23.097, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.542, "filter_rmsd": 0.104, "frame": { "rmsd": 0.007, "origin": [ 209.005, 199.061, 248.130 ], "x_axis": [ 0.678, -0.703, -0.218 ], "y_axis": [ -0.475, -0.192, -0.859 ], "z_axis": [ 0.562, 0.685, -0.464 ], "quaternion": [ 0.505, -0.764, 0.385, -0.113 ] } }, { "index": 1526, "index_chain": 1526, "chain_name": "A", "nt_resnum": 1604, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1604", "linked_nts": [ "///A/1603", "///A/1605" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -65.243, "beta": 173.307, "gamma": 50.268, "delta": 83.700, "epsilon": -150.613, "zeta": -75.283, "epsilon_zeta": -75.330, "bb_type": "BI", "chi": -149.845, "glyco_bond": "anti", "C5prime_xyz": [ -1.503, 8.815, -0.072 ], "P_xyz": [ 1.055, 9.368, 0.079 ], "form": ".", "ssZp": 4.023, "Dp": 4.488, "splay_angle": 25.498, "splay_distance": 4.135, "splay_ratio": 0.221, "d22": 4.838, "d64": 4.713, "eta": 166.516, "theta": -146.318, "eta_prime": 179.582, "theta_prime": -144.036, "eta_base": -145.201, "theta_base": -116.367, "v0": -0.810, "v1": -20.372, "v2": 32.551, "v3": -33.956, "v4": 21.943, "amplitude": 34.627, "phase_angle": 19.936, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.937, "filter_rmsd": 0.059, "frame": { "rmsd": 0.008, "origin": [ 211.472, 201.369, 247.633 ], "x_axis": [ 0.309, -0.725, -0.615 ], "y_axis": [ -0.695, 0.269, -0.666 ], "z_axis": [ 0.649, 0.634, -0.421 ], "quaternion": [ 0.538, -0.604, 0.588, -0.014 ] } }, { "index": 1527, "index_chain": 1527, "chain_name": "A", "nt_resnum": 1605, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1605", "linked_nts": [ "///A/1604", "///A/1606" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -61.666, "beta": 169.632, "gamma": 60.188, "delta": 82.404, "epsilon": -134.051, "zeta": 41.157, "epsilon_zeta": 184.792, "bb_type": "--", "chi": -141.466, "glyco_bond": "anti", "C5prime_xyz": [ -1.503, 8.795, -0.591 ], "P_xyz": [ 1.013, 9.242, -1.130 ], "form": ".", "ssZp": 3.537, "Dp": 4.592, "splay_angle": 21.786, "splay_distance": 3.667, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 179.038, "theta": -18.507, "eta_prime": -168.519, "theta_prime": -59.955, "eta_base": -133.396, "theta_base": -104.510, "v0": -1.251, "v1": -20.577, "v2": 33.283, "v3": -34.949, "v4": 22.884, "amplitude": 35.557, "phase_angle": 20.602, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.901, "filter_rmsd": 0.058, "frame": { "rmsd": 0.009, "origin": [ 214.718, 202.873, 245.560 ], "x_axis": [ -0.112, -0.473, -0.874 ], "y_axis": [ -0.661, 0.692, -0.289 ], "z_axis": [ 0.742, 0.546, -0.390 ], "quaternion": [ 0.545, -0.383, 0.741, 0.086 ] } }, { "index": 1528, "index_chain": 1528, "chain_name": "A", "nt_resnum": 1606, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1606", "linked_nts": [ "///A/1605", "///A/1607" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 162.027, "beta": 139.783, "gamma": 65.700, "delta": 150.200, "epsilon": -79.341, "zeta": 117.163, "epsilon_zeta": 163.496, "bb_type": "--", "chi": -139.782, "glyco_bond": "anti", "C5prime_xyz": [ -1.494, 8.647, -0.065 ], "P_xyz": [ 1.067, 8.314, 0.353 ], "form": ".", "ssZp": 0.357, "Dp": 0.442, "splay_angle": 64.505, "splay_distance": 11.531, "splay_ratio": 0.536, "d22": null, "d64": null, "eta": 62.873, "theta": 171.069, "eta_prime": 130.123, "theta_prime": 133.807, "eta_base": 122.778, "theta_base": 142.372, "v0": -19.127, "v1": 34.963, "v2": -36.561, "v3": 26.417, "v4": -4.767, "amplitude": 37.310, "phase_angle": 168.494, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.483, "filter_rmsd": 0.042, "frame": { "rmsd": 0.013, "origin": [ 215.875, 204.690, 242.592 ], "x_axis": [ 0.363, 0.223, 0.905 ], "y_axis": [ -0.504, 0.863, -0.010 ], "z_axis": [ -0.783, -0.453, 0.426 ], "quaternion": [ 0.814, 0.136, -0.518, 0.223 ] } }, { "index": 1529, "index_chain": 1529, "chain_name": "A", "nt_resnum": 1607, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1607", "linked_nts": [ "///A/1606", "///A/1608" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BII,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": 62.028, "beta": -122.909, "gamma": -79.503, "delta": 152.726, "epsilon": -94.870, "zeta": 133.556, "epsilon_zeta": 131.573, "bb_type": "BII", "chi": -131.384, "glyco_bond": "anti", "C5prime_xyz": [ -2.041, 8.701, -0.563 ], "P_xyz": [ -2.374, 11.034, -1.708 ], "form": ".", "ssZp": 0.553, "Dp": 0.689, "splay_angle": 49.964, "splay_distance": 8.043, "splay_ratio": 0.424, "d22": null, "d64": null, "eta": -48.214, "theta": 87.798, "eta_prime": -73.933, "theta_prime": 96.981, "eta_base": -83.773, "theta_base": 89.450, "v0": -23.153, "v1": 39.214, "v2": -39.238, "v3": 26.921, "v4": -2.582, "amplitude": 40.665, "phase_angle": 164.776, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.057, "frame": { "rmsd": 0.009, "origin": [ 217.396, 205.219, 231.174 ], "x_axis": [ -0.541, -0.612, -0.576 ], "y_axis": [ -0.839, 0.436, 0.325 ], "z_axis": [ 0.052, 0.660, -0.750 ], "quaternion": [ 0.190, -0.440, 0.826, 0.298 ] } }, { "index": 1530, "index_chain": 1530, "chain_name": "A", "nt_resnum": 1608, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1608", "linked_nts": [ "///A/1607", "///A/1609" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 176.399, "beta": -167.093, "gamma": 55.275, "delta": 80.879, "epsilon": -148.319, "zeta": -66.157, "epsilon_zeta": -82.162, "bb_type": "BI", "chi": -179.202, "glyco_bond": "anti", "C5prime_xyz": [ -1.464, 8.440, 1.602 ], "P_xyz": [ 0.870, 8.697, 2.761 ], "form": "A", "ssZp": 4.631, "Dp": 4.625, "splay_angle": 25.112, "splay_distance": 3.874, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": 121.079, "theta": -140.454, "eta_prime": 106.001, "theta_prime": -135.094, "eta_base": 106.167, "theta_base": -94.767, "v0": 1.112, "v1": -23.206, "v2": 35.224, "v3": -35.556, "v4": 21.756, "amplitude": 36.820, "phase_angle": 16.927, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4g", "suiteness": 0.128, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 218.388, 204.741, 239.141 ], "x_axis": [ -0.631, -0.393, -0.669 ], "y_axis": [ -0.556, 0.831, 0.037 ], "z_axis": [ 0.541, 0.395, -0.742 ], "quaternion": [ 0.338, -0.265, 0.895, 0.121 ] } }, { "index": 1531, "index_chain": 1531, "chain_name": "A", "nt_resnum": 1609, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1609", "linked_nts": [ "///A/1608", "///A/1610" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -69.693, "beta": 179.195, "gamma": 56.976, "delta": 83.831, "epsilon": -149.907, "zeta": -70.959, "epsilon_zeta": -78.948, "bb_type": "BI", "chi": -166.467, "glyco_bond": "anti", "C5prime_xyz": [ -1.219, 8.679, 0.923 ], "P_xyz": [ 1.331, 8.896, 1.484 ], "form": "A", "ssZp": 4.454, "Dp": 4.551, "splay_angle": 22.413, "splay_distance": 3.520, "splay_ratio": 0.195, "d22": 4.258, "d64": 4.140, "eta": 170.056, "theta": -142.100, "eta_prime": -172.473, "theta_prime": -141.546, "eta_base": -118.013, "theta_base": -112.426, "v0": 1.512, "v1": -22.596, "v2": 33.874, "v3": -33.940, "v4": 20.474, "amplitude": 35.276, "phase_angle": 16.209, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.940, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 219.802, 204.354, 235.555 ], "x_axis": [ -0.843, 0.296, -0.450 ], "y_axis": [ 0.035, 0.863, 0.503 ], "z_axis": [ 0.537, 0.408, -0.738 ], "quaternion": [ 0.266, 0.089, 0.928, 0.246 ] } }, { "index": 1532, "index_chain": 1532, "chain_name": "A", "nt_resnum": 1610, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1610", "linked_nts": [ "///A/1609", "///A/1611" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -70.562, "beta": 171.112, "gamma": 57.432, "delta": 81.423, "epsilon": -147.602, "zeta": -69.704, "epsilon_zeta": -77.898, "bb_type": "BI", "chi": -164.512, "glyco_bond": "anti", "C5prime_xyz": [ -1.341, 8.650, 0.798 ], "P_xyz": [ 1.249, 9.006, 0.922 ], "form": "A", "ssZp": 4.521, "Dp": 4.647, "splay_angle": 22.350, "splay_distance": 3.553, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 164.325, "theta": -140.483, "eta_prime": 179.986, "theta_prime": -140.341, "eta_base": -133.934, "theta_base": -108.839, "v0": 3.003, "v1": -25.115, "v2": 36.446, "v3": -35.686, "v4": 20.622, "amplitude": 37.580, "phase_angle": 14.107, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.945, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 220.886, 204.977, 232.264 ], "x_axis": [ -0.688, 0.723, -0.062 ], "y_axis": [ 0.526, 0.555, 0.644 ], "z_axis": [ 0.501, 0.410, -0.762 ], "quaternion": [ 0.162, 0.360, 0.867, 0.304 ] } }, { "index": 1533, "index_chain": 1533, "chain_name": "A", "nt_resnum": 1611, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1611", "linked_nts": [ "///A/1610", "///A/1612" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -67.834, "beta": 166.712, "gamma": 61.960, "delta": 82.155, "epsilon": -153.870, "zeta": -69.125, "epsilon_zeta": -84.745, "bb_type": "BI", "chi": -170.737, "glyco_bond": "anti", "C5prime_xyz": [ -1.639, 8.689, 1.135 ], "P_xyz": [ 0.915, 9.178, 1.458 ], "form": "A", "ssZp": 4.441, "Dp": 4.498, "splay_angle": 22.029, "splay_distance": 3.506, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 166.226, "theta": -143.436, "eta_prime": -175.383, "theta_prime": -143.595, "eta_base": -124.696, "theta_base": -113.456, "v0": -0.684, "v1": -21.205, "v2": 33.738, "v3": -35.083, "v4": 22.561, "amplitude": 35.830, "phase_angle": 19.673, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.856, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 220.710, 206.692, 229.157 ], "x_axis": [ -0.329, 0.820, 0.469 ], "y_axis": [ 0.845, 0.034, 0.534 ], "z_axis": [ 0.422, 0.572, -0.704 ], "quaternion": [ -0.016, 0.579, 0.719, 0.385 ] } }, { "index": 1534, "index_chain": 1534, "chain_name": "A", "nt_resnum": 1612, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1612", "linked_nts": [ "///A/1611", "///A/1613" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -66.679, "beta": -176.981, "gamma": 50.473, "delta": 84.243, "epsilon": -154.198, "zeta": -87.553, "epsilon_zeta": -66.645, "bb_type": "BI", "chi": -155.377, "glyco_bond": "anti", "C5prime_xyz": [ -1.258, 8.805, 0.289 ], "P_xyz": [ 1.245, 9.208, 0.953 ], "form": ".", "ssZp": 4.125, "Dp": 4.431, "splay_angle": 23.811, "splay_distance": 3.862, "splay_ratio": 0.206, "d22": 4.783, "d64": 4.871, "eta": 171.285, "theta": -158.452, "eta_prime": -175.474, "theta_prime": -150.359, "eta_base": -132.016, "theta_base": -144.045, "v0": 0.305, "v1": -20.997, "v2": 32.530, "v3": -33.275, "v4": 20.817, "amplitude": 34.230, "phase_angle": 18.134, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.925, "filter_rmsd": 0.062, "frame": { "rmsd": 0.008, "origin": [ 220.547, 209.166, 226.678 ], "x_axis": [ 0.241, 0.610, 0.755 ], "y_axis": [ 0.887, -0.454, 0.085 ], "z_axis": [ 0.395, 0.649, -0.651 ], "quaternion": [ -0.184, 0.766, 0.489, 0.375 ] } }, { "index": 1535, "index_chain": 1535, "chain_name": "A", "nt_resnum": 1613, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1613", "linked_nts": [ "///A/1612", "///A/1614" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop", "alpha": -48.369, "beta": 158.824, "gamma": 69.196, "delta": 145.141, "epsilon": -155.510, "zeta": -158.415, "epsilon_zeta": 2.905, "bb_type": "--", "chi": -132.364, "glyco_bond": "anti", "C5prime_xyz": [ -2.173, 8.761, -0.611 ], "P_xyz": [ 0.344, 9.389, -0.325 ], "form": ".", "ssZp": 1.945, "Dp": 2.057, "splay_angle": 73.690, "splay_distance": 10.993, "splay_ratio": 0.600, "d22": null, "d64": null, "eta": 179.732, "theta": -141.261, "eta_prime": -143.318, "theta_prime": 161.552, "eta_base": -135.186, "theta_base": 108.591, "v0": -25.658, "v1": 38.475, "v2": -35.911, "v3": 21.989, "v4": 2.088, "amplitude": 38.680, "phase_angle": 158.189, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.582, "filter_rmsd": 0.058, "frame": { "rmsd": 0.010, "origin": [ 220.369, 211.366, 223.510 ], "x_axis": [ 0.441, 0.419, 0.794 ], "y_axis": [ 0.833, -0.521, -0.187 ], "z_axis": [ 0.335, 0.744, -0.578 ], "quaternion": [ -0.292, 0.797, 0.393, 0.354 ] } }, { "index": 1536, "index_chain": 1536, "chain_name": "A", "nt_resnum": 1614, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1614", "linked_nts": [ "///A/1613", "///A/1615" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 149.367, "beta": -150.050, "gamma": 78.204, "delta": 150.178, "epsilon": -131.073, "zeta": -98.852, "epsilon_zeta": -32.221, "bb_type": "--", "chi": -105.327, "glyco_bond": "anti", "C5prime_xyz": [ -2.208, 8.154, -1.853 ], "P_xyz": [ 0.284, 8.888, -1.498 ], "form": ".", "ssZp": 1.494, "Dp": 1.540, "splay_angle": 95.675, "splay_distance": 14.345, "splay_ratio": 0.741, "d22": null, "d64": null, "eta": 73.679, "theta": -60.430, "eta_prime": 91.991, "theta_prime": -85.555, "eta_base": 57.685, "theta_base": -58.025, "v0": -21.348, "v1": 36.473, "v2": -36.854, "v3": 25.453, "v4": -2.763, "amplitude": 38.089, "phase_angle": 165.371, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.011, "origin": [ 216.998, 201.886, 219.080 ], "x_axis": [ 0.630, -0.564, 0.534 ], "y_axis": [ 0.738, 0.649, -0.185 ], "z_axis": [ -0.242, 0.511, 0.825 ], "quaternion": [ 0.881, -0.197, -0.220, -0.369 ] } }, { "index": 1537, "index_chain": 1537, "chain_name": "A", "nt_resnum": 1615, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1615", "linked_nts": [ "///A/1614", "///A/1616" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -175.608, "beta": -157.470, "gamma": 158.323, "delta": 146.310, "epsilon": -136.927, "zeta": 143.604, "epsilon_zeta": 79.469, "bb_type": "--", "chi": -163.008, "glyco_bond": "anti", "C5prime_xyz": [ -2.022, 8.484, 1.134 ], "P_xyz": [ 0.441, 9.321, 1.169 ], "form": ".", "ssZp": 1.353, "Dp": 1.744, "splay_angle": 37.685, "splay_distance": 5.782, "splay_ratio": 0.343, "d22": null, "d64": null, "eta": 176.825, "theta": 110.600, "eta_prime": -134.062, "theta_prime": 92.224, "eta_base": -109.610, "theta_base": 81.321, "v0": -20.984, "v1": 34.961, "v2": -34.821, "v3": 23.615, "v4": -1.860, "amplitude": 36.201, "phase_angle": 164.129, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 225.227, 213.110, 222.557 ], "x_axis": [ 0.643, -0.601, -0.474 ], "y_axis": [ -0.727, -0.286, -0.624 ], "z_axis": [ 0.240, 0.746, -0.621 ], "quaternion": [ -0.429, 0.798, -0.416, -0.074 ] } }, { "index": 1538, "index_chain": 1538, "chain_name": "A", "nt_resnum": 1616, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1616", "linked_nts": [ "///A/1615", "///A/1617" ], "nt_type": "RNA", "dbn": ")", "summary": "~C3'-endo,BII,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,phosphate,splayed-apart", "alpha": -78.813, "beta": 126.870, "gamma": 58.162, "delta": 82.265, "epsilon": -111.722, "zeta": 172.421, "epsilon_zeta": 75.857, "bb_type": "BII", "chi": -82.539, "glyco_bond": "--", "C5prime_xyz": [ -2.878, 7.064, -3.139 ], "P_xyz": [ -1.374, 5.572, -4.656 ], "form": ".", "ssZp": -1.156, "Dp": 4.591, "splay_angle": 158.017, "splay_distance": 21.017, "splay_ratio": 0.982, "d22": null, "d64": null, "eta": 175.829, "theta": 102.566, "eta_prime": 171.964, "theta_prime": 117.347, "eta_base": 155.594, "theta_base": 151.930, "v0": -2.418, "v1": -19.705, "v2": 32.969, "v3": -35.303, "v4": 23.818, "amplitude": 35.661, "phase_angle": 22.405, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.518, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 220.183, 210.577, 223.809 ], "x_axis": [ 0.412, 0.479, 0.775 ], "y_axis": [ -0.846, 0.516, 0.130 ], "z_axis": [ -0.338, -0.710, 0.618 ], "quaternion": [ 0.798, 0.263, -0.349, 0.415 ] } }, { "index": 1539, "index_chain": 1539, "chain_name": "A", "nt_resnum": 1617, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1617", "linked_nts": [ "///A/1616", "///A/1618" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,A-minor,phosphate,splayed-apart", "alpha": 176.693, "beta": 136.690, "gamma": -176.044, "delta": 82.106, "epsilon": -145.372, "zeta": -71.824, "epsilon_zeta": -73.549, "bb_type": "BI", "chi": -176.970, "glyco_bond": "anti", "C5prime_xyz": [ -1.483, 8.433, 1.503 ], "P_xyz": [ -1.267, 10.986, 0.977 ], "form": "A", "ssZp": 4.637, "Dp": 4.645, "splay_angle": 23.697, "splay_distance": 3.528, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": -127.737, "theta": 167.901, "eta_prime": -162.506, "theta_prime": -174.967, "eta_base": 166.546, "theta_base": -120.732, "v0": 2.747, "v1": -24.629, "v2": 35.887, "v3": -35.300, "v4": 20.510, "amplitude": 37.058, "phase_angle": 14.437, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.011, "origin": [ 200.446, 217.800, 223.830 ], "x_axis": [ -0.151, -0.478, 0.865 ], "y_axis": [ 0.953, -0.304, -0.002 ], "z_axis": [ 0.264, 0.824, 0.501 ], "quaternion": [ 0.512, -0.404, -0.294, -0.699 ] } }, { "index": 1540, "index_chain": 1540, "chain_name": "A", "nt_resnum": 1618, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1618", "linked_nts": [ "///A/1617", "///A/1619" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,A-minor,phosphate", "alpha": -76.749, "beta": 174.832, "gamma": 62.652, "delta": 85.867, "epsilon": -146.813, "zeta": -70.787, "epsilon_zeta": -76.026, "bb_type": "BI", "chi": -165.648, "glyco_bond": "anti", "C5prime_xyz": [ -1.073, 8.479, 0.902 ], "P_xyz": [ 1.546, 8.487, 0.993 ], "form": "A", "ssZp": 4.535, "Dp": 4.650, "splay_angle": 24.141, "splay_distance": 3.699, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 165.754, "theta": -137.200, "eta_prime": -177.283, "theta_prime": -137.802, "eta_base": -117.266, "theta_base": -107.952, "v0": 6.668, "v1": -26.605, "v2": 35.321, "v3": -32.446, "v4": 16.314, "amplitude": 35.678, "phase_angle": 8.108, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.756, "filter_rmsd": 0.041, "frame": { "rmsd": 0.012, "origin": [ 200.342, 219.798, 226.736 ], "x_axis": [ 0.595, -0.528, 0.605 ], "y_axis": [ 0.778, 0.191, -0.599 ], "z_axis": [ 0.201, 0.827, 0.525 ], "quaternion": [ 0.760, -0.469, -0.133, -0.430 ] } }, { "index": 1541, "index_chain": 1541, "chain_name": "A", "nt_resnum": 1619, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1619", "linked_nts": [ "///A/1618", "///A/1620" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper,phosphate", "alpha": -71.973, "beta": 162.717, "gamma": 68.274, "delta": 83.785, "epsilon": -150.626, "zeta": -75.413, "epsilon_zeta": -75.213, "bb_type": "BI", "chi": -169.644, "glyco_bond": "anti", "C5prime_xyz": [ -1.312, 8.524, 1.100 ], "P_xyz": [ 1.285, 8.783, 0.872 ], "form": "A", "ssZp": 4.588, "Dp": 4.622, "splay_angle": 25.392, "splay_distance": 3.875, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 166.283, "theta": -146.439, "eta_prime": -173.039, "theta_prime": -150.928, "eta_base": -120.902, "theta_base": -130.809, "v0": 3.835, "v1": -24.911, "v2": 35.320, "v3": -34.031, "v4": 19.100, "amplitude": 36.198, "phase_angle": 12.644, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.591, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 201.088, 221.734, 229.798 ], "x_axis": [ 0.949, -0.282, 0.143 ], "y_axis": [ 0.271, 0.494, -0.826 ], "z_axis": [ 0.162, 0.822, 0.545 ], "quaternion": [ 0.864, -0.477, 0.006, -0.160 ] } }, { "index": 1542, "index_chain": 1542, "chain_name": "A", "nt_resnum": 1620, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1620", "linked_nts": [ "///A/1619", "///A/1621" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper", "alpha": -73.462, "beta": 161.121, "gamma": 69.497, "delta": 80.422, "epsilon": -143.662, "zeta": -74.765, "epsilon_zeta": -68.898, "bb_type": "BI", "chi": 179.302, "glyco_bond": "anti", "C5prime_xyz": [ -1.371, 8.322, 1.691 ], "P_xyz": [ 1.216, 8.716, 1.576 ], "form": "A", "ssZp": 4.766, "Dp": 4.729, "splay_angle": 27.963, "splay_distance": 4.112, "splay_ratio": 0.243, "d22": null, "d64": null, "eta": 166.824, "theta": -143.141, "eta_prime": -178.570, "theta_prime": -144.263, "eta_base": -136.934, "theta_base": -114.103, "v0": 4.470, "v1": -26.790, "v2": 37.715, "v3": -36.108, "v4": 19.964, "amplitude": 38.567, "phase_angle": 12.066, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.540, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 201.351, 223.771, 233.085 ], "x_axis": [ 0.965, 0.051, -0.256 ], "y_axis": [ -0.245, 0.515, -0.822 ], "z_axis": [ 0.090, 0.856, 0.509 ], "quaternion": [ 0.864, -0.485, 0.100, 0.086 ] } }, { "index": 1543, "index_chain": 1543, "chain_name": "A", "nt_resnum": 1621, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1621", "linked_nts": [ "///A/1620", "///A/1622" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -68.716, "beta": 168.293, "gamma": 60.731, "delta": 80.842, "epsilon": -137.419, "zeta": -46.402, "epsilon_zeta": -91.017, "bb_type": "BI", "chi": 173.645, "glyco_bond": "anti", "C5prime_xyz": [ -1.314, 8.155, 1.986 ], "P_xyz": [ 1.281, 8.287, 2.302 ], "form": ".", "ssZp": 4.812, "Dp": 4.784, "splay_angle": 39.700, "splay_distance": 5.969, "splay_ratio": 0.346, "d22": null, "d64": null, "eta": 167.657, "theta": -109.691, "eta_prime": -177.797, "theta_prime": -108.491, "eta_base": -126.007, "theta_base": -68.221, "v0": 6.922, "v1": -29.093, "v2": 39.040, "v3": -36.040, "v4": 18.359, "amplitude": 39.494, "phase_angle": 8.699, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.888, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 203.196, 226.132, 235.901 ], "x_axis": [ 0.591, 0.353, -0.726 ], "y_axis": [ -0.807, 0.247, -0.537 ], "z_axis": [ -0.010, 0.903, 0.430 ], "quaternion": [ 0.753, -0.478, 0.238, 0.385 ] } }, { "index": 1544, "index_chain": 1544, "chain_name": "A", "nt_resnum": 1622, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1622", "linked_nts": [ "///A/1621", "///A/1623" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -80.796, "beta": -165.228, "gamma": 56.883, "delta": 81.821, "epsilon": -156.340, "zeta": -66.746, "epsilon_zeta": -89.593, "bb_type": "BI", "chi": -173.536, "glyco_bond": "anti", "C5prime_xyz": [ -1.351, 8.612, 1.313 ], "P_xyz": [ 1.034, 8.867, 2.379 ], "form": "A", "ssZp": 4.530, "Dp": 4.551, "splay_angle": 22.023, "splay_distance": 3.502, "splay_ratio": 0.195, "d22": 4.513, "d64": 4.455, "eta": 163.809, "theta": -145.887, "eta_prime": -169.371, "theta_prime": -142.646, "eta_base": -99.029, "theta_base": -117.176, "v0": 1.508, "v1": -23.493, "v2": 35.228, "v3": -35.327, "v4": 21.329, "amplitude": 36.699, "phase_angle": 16.276, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.442, "filter_rmsd": 0.062, "frame": { "rmsd": 0.005, "origin": [ 205.446, 231.375, 234.144 ], "x_axis": [ -0.451, 0.210, -0.868 ], "y_axis": [ -0.865, -0.343, 0.367 ], "z_axis": [ -0.221, 0.915, 0.336 ], "quaternion": [ 0.368, -0.373, 0.439, 0.730 ] } }, { "index": 1545, "index_chain": 1545, "chain_name": "A", "nt_resnum": 1623, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1623", "linked_nts": [ "///A/1622", "///A/1624" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -75.379, "beta": -176.109, "gamma": 58.406, "delta": 84.177, "epsilon": -179.172, "zeta": -74.079, "epsilon_zeta": -105.093, "bb_type": "BI", "chi": -162.675, "glyco_bond": "anti", "C5prime_xyz": [ -1.316, 8.776, 0.688 ], "P_xyz": [ 1.207, 9.165, 1.317 ], "form": "A", "ssZp": 4.130, "Dp": 4.226, "splay_angle": 18.350, "splay_distance": 2.898, "splay_ratio": 0.160, "d22": 4.114, "d64": 3.594, "eta": 167.839, "theta": -134.442, "eta_prime": -175.316, "theta_prime": -138.892, "eta_base": -135.799, "theta_base": -103.519, "v0": -0.002, "v1": -20.767, "v2": 32.377, "v3": -33.240, "v4": 20.984, "amplitude": 34.154, "phase_angle": 18.561, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.833, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 206.204, 234.793, 234.066 ], "x_axis": [ -0.843, -0.087, -0.531 ], "y_axis": [ -0.469, -0.365, 0.804 ], "z_axis": [ -0.264, 0.927, 0.266 ], "quaternion": [ 0.122, -0.253, 0.550, 0.786 ] } }, { "index": 1546, "index_chain": 1546, "chain_name": "A", "nt_resnum": 1624, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1624", "linked_nts": [ "///A/1623", "///A/1625" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -171.103, "beta": -138.957, "gamma": 124.961, "delta": 81.379, "epsilon": -153.635, "zeta": -76.443, "epsilon_zeta": -77.192, "bb_type": "BI", "chi": -165.244, "glyco_bond": "anti", "C5prime_xyz": [ -1.645, 8.781, 0.797 ], "P_xyz": [ 0.887, 9.139, 0.252 ], "form": "A", "ssZp": 4.343, "Dp": 4.442, "splay_angle": 22.472, "splay_distance": 3.678, "splay_ratio": 0.197, "d22": 4.740, "d64": 4.828, "eta": 153.025, "theta": -147.745, "eta_prime": 174.888, "theta_prime": -154.541, "eta_base": -130.544, "theta_base": -143.076, "v0": -3.279, "v1": -18.862, "v2": 32.460, "v3": -35.313, "v4": 24.315, "amplitude": 35.474, "phase_angle": 23.792, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.007, "origin": [ 205.094, 237.433, 233.623 ], "x_axis": [ -0.935, -0.347, 0.070 ], "y_axis": [ 0.111, -0.098, 0.989 ], "z_axis": [ -0.337, 0.933, 0.130 ], "quaternion": [ -0.156, -0.091, 0.653, 0.736 ] } }, { "index": 1547, "index_chain": 1547, "chain_name": "A", "nt_resnum": 1625, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1625", "linked_nts": [ "///A/1624", "///A/1626" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor,ribose-zipper", "alpha": -67.178, "beta": 174.172, "gamma": 56.092, "delta": 82.963, "epsilon": -93.159, "zeta": -151.093, "epsilon_zeta": 57.934, "bb_type": "--", "chi": -157.241, "glyco_bond": "anti", "C5prime_xyz": [ -1.616, 8.867, 0.324 ], "P_xyz": [ 0.896, 9.558, 0.578 ], "form": "B", "ssZp": 3.658, "Dp": 4.429, "splay_angle": 23.904, "splay_distance": 4.024, "splay_ratio": 0.212, "d22": 4.674, "d64": 4.390, "eta": -174.027, "theta": -140.834, "eta_prime": -168.998, "theta_prime": -142.918, "eta_base": -149.431, "theta_base": -120.856, "v0": -3.331, "v1": -18.496, "v2": 31.907, "v3": -34.755, "v4": 24.060, "amplitude": 34.917, "phase_angle": 23.965, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.954, "filter_rmsd": 0.058, "frame": { "rmsd": 0.011, "origin": [ 204.105, 240.633, 232.103 ], "x_axis": [ -0.767, -0.410, 0.495 ], "y_axis": [ 0.486, 0.133, 0.864 ], "z_axis": [ -0.420, 0.902, 0.097 ], "quaternion": [ -0.340, 0.028, 0.671, 0.658 ] } }, { "index": 1548, "index_chain": 1548, "chain_name": "A", "nt_resnum": 1626, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1626", "linked_nts": [ "///A/1625", "///A/1627" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper,phosphate", "alpha": 89.758, "beta": -95.147, "gamma": 175.418, "delta": 80.989, "epsilon": -142.850, "zeta": -73.149, "epsilon_zeta": -69.701, "bb_type": "BI", "chi": -168.426, "glyco_bond": "anti", "C5prime_xyz": [ -1.273, 8.544, 1.035 ], "P_xyz": [ -0.098, 9.000, -1.256 ], "form": "A", "ssZp": 4.640, "Dp": 4.720, "splay_angle": 27.087, "splay_distance": 4.216, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 143.260, "theta": -145.014, "eta_prime": 169.910, "theta_prime": -158.637, "eta_base": -153.403, "theta_base": -134.742, "v0": 5.471, "v1": -27.502, "v2": 37.901, "v3": -35.722, "v4": 19.082, "amplitude": 38.559, "phase_angle": 10.601, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 202.411, 244.225, 232.751 ], "x_axis": [ -0.540, -0.380, 0.751 ], "y_axis": [ 0.668, 0.349, 0.657 ], "z_axis": [ -0.512, 0.856, 0.065 ], "quaternion": [ -0.468, 0.106, 0.675, 0.560 ] } }, { "index": 1549, "index_chain": 1549, "chain_name": "A", "nt_resnum": 1627, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1627", "linked_nts": [ "///A/1626", "///A/1628" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -53.729, "beta": 166.220, "gamma": 52.531, "delta": 77.617, "epsilon": -124.255, "zeta": -63.316, "epsilon_zeta": -60.940, "bb_type": "--", "chi": -172.800, "glyco_bond": "anti", "C5prime_xyz": [ -1.533, 8.568, 1.248 ], "P_xyz": [ 1.016, 9.029, 1.586 ], "form": ".", "ssZp": 4.647, "Dp": 4.757, "splay_angle": 38.332, "splay_distance": 5.813, "splay_ratio": 0.329, "d22": null, "d64": null, "eta": 174.423, "theta": -118.243, "eta_prime": -171.296, "theta_prime": -111.049, "eta_base": -127.191, "theta_base": -55.106, "v0": 1.838, "v1": -25.415, "v2": 38.190, "v3": -38.166, "v4": 22.836, "amplitude": 39.733, "phase_angle": 16.021, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.855, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 198.747, 246.221, 233.356 ], "x_axis": [ -0.005, -0.172, 0.985 ], "y_axis": [ 0.884, 0.460, 0.085 ], "z_axis": [ -0.468, 0.871, 0.150 ], "quaternion": [ 0.633, -0.310, -0.573, -0.417 ] } }, { "index": 1550, "index_chain": 1550, "chain_name": "A", "nt_resnum": 1628, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1628", "linked_nts": [ "///A/1627", "///A/1629" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -55.247, "beta": 158.812, "gamma": 56.401, "delta": 80.868, "epsilon": -163.877, "zeta": -78.803, "epsilon_zeta": -85.073, "bb_type": "BI", "chi": -167.287, "glyco_bond": "anti", "C5prime_xyz": [ -1.238, 8.646, 0.960 ], "P_xyz": [ 1.376, 8.845, 0.907 ], "form": "A", "ssZp": 4.506, "Dp": 4.542, "splay_angle": 22.304, "splay_distance": 3.663, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 157.439, "theta": -127.499, "eta_prime": -168.161, "theta_prime": -137.408, "eta_base": -82.674, "theta_base": -113.595, "v0": 3.633, "v1": -25.558, "v2": 36.614, "v3": -35.530, "v4": 20.125, "amplitude": 37.610, "phase_angle": 13.216, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.597, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 199.511, 248.656, 238.579 ], "x_axis": [ 0.840, 0.323, 0.437 ], "y_axis": [ 0.268, 0.454, -0.850 ], "z_axis": [ -0.473, 0.830, 0.295 ], "quaternion": [ 0.805, -0.522, -0.283, 0.017 ] } }, { "index": 1551, "index_chain": 1551, "chain_name": "A", "nt_resnum": 1629, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1629", "linked_nts": [ "///A/1628", "///A/1630" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 169.261, "beta": -152.591, "gamma": 156.946, "delta": 80.131, "epsilon": -105.937, "zeta": -97.716, "epsilon_zeta": -8.221, "bb_type": "--", "chi": 179.370, "glyco_bond": "anti", "C5prime_xyz": [ -1.288, 8.366, 1.736 ], "P_xyz": [ 0.845, 9.542, 0.804 ], "form": ".", "ssZp": 4.724, "Dp": 4.787, "splay_angle": 33.689, "splay_distance": 5.053, "splay_ratio": 0.290, "d22": null, "d64": null, "eta": 165.018, "theta": -141.086, "eta_prime": 179.695, "theta_prime": -133.645, "eta_base": -135.178, "theta_base": -83.546, "v0": 4.797, "v1": -27.113, "v2": 37.912, "v3": -36.181, "v4": 19.739, "amplitude": 38.706, "phase_angle": 11.628, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.245, "filter_rmsd": 0.062, "frame": { "rmsd": 0.005, "origin": [ 198.835, 250.722, 241.528 ], "x_axis": [ 0.860, 0.495, -0.128 ], "y_axis": [ -0.290, 0.266, -0.919 ], "z_axis": [ -0.421, 0.827, 0.372 ], "quaternion": [ 0.790, -0.553, -0.093, 0.248 ] } }, { "index": 1552, "index_chain": 1552, "chain_name": "A", "nt_resnum": 1630, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1630", "linked_nts": [ "///A/1629", "///A/1631" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -32.678, "beta": 133.813, "gamma": 50.440, "delta": 82.919, "epsilon": -110.987, "zeta": 165.276, "epsilon_zeta": 83.737, "bb_type": "BII", "chi": -172.112, "glyco_bond": "anti", "C5prime_xyz": [ -1.526, 8.556, 1.219 ], "P_xyz": [ 1.080, 8.475, 1.006 ], "form": ".", "ssZp": 4.550, "Dp": 4.731, "splay_angle": 53.343, "splay_distance": 7.954, "splay_ratio": 0.449, "d22": null, "d64": null, "eta": 170.794, "theta": 161.608, "eta_prime": -165.405, "theta_prime": -179.729, "eta_base": -98.990, "theta_base": 159.262, "v0": 2.318, "v1": -23.874, "v2": 35.103, "v3": -34.780, "v4": 20.471, "amplitude": 36.351, "phase_angle": 15.055, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.445, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 199.824, 255.677, 241.514 ], "x_axis": [ 0.278, 0.455, -0.846 ], "y_axis": [ -0.875, -0.243, -0.418 ], "z_axis": [ -0.396, 0.857, 0.331 ], "quaternion": [ 0.584, -0.545, 0.193, 0.569 ] } }, { "index": 1553, "index_chain": 1553, "chain_name": "A", "nt_resnum": 1631, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1631", "linked_nts": [ "///A/1630", "///A/1632" ], "nt_type": "RNA", "dbn": ".", "summary": "k-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop", "alpha": 127.996, "beta": -116.893, "gamma": 167.512, "delta": 150.539, "epsilon": -70.616, "zeta": 103.351, "epsilon_zeta": 186.032, "bb_type": "--", "chi": -142.045, "glyco_bond": "anti", "C5prime_xyz": [ -1.786, 8.682, 0.050 ], "P_xyz": [ 0.648, 8.554, -0.920 ], "form": ".", "ssZp": 0.066, "Dp": 0.119, "splay_angle": 46.944, "splay_distance": 8.143, "splay_ratio": 0.399, "d22": null, "d64": null, "eta": -99.299, "theta": 114.651, "eta_prime": -144.922, "theta_prime": 130.577, "eta_base": 175.371, "theta_base": 150.090, "v0": -21.129, "v1": 36.840, "v2": -37.528, "v3": 26.310, "v4": -3.455, "amplitude": 38.631, "phase_angle": 166.277, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 196.661, 255.278, 248.802 ], "x_axis": [ 0.684, 0.061, -0.727 ], "y_axis": [ -0.718, 0.236, -0.655 ], "z_axis": [ 0.132, 0.970, 0.205 ], "quaternion": [ 0.729, -0.557, 0.295, 0.267 ] } }, { "index": 1554, "index_chain": 1554, "chain_name": "A", "nt_resnum": 1632, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1632", "linked_nts": [ "///A/1631", "///A/1633" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,A-minor", "alpha": 72.021, "beta": -102.190, "gamma": -137.940, "delta": 82.205, "epsilon": -174.110, "zeta": -78.043, "epsilon_zeta": -96.067, "bb_type": "BI", "chi": -155.502, "glyco_bond": "anti", "C5prime_xyz": [ -1.382, 8.761, 0.269 ], "P_xyz": [ -1.614, 10.197, -1.906 ], "form": "A", "ssZp": 4.264, "Dp": 4.414, "splay_angle": 20.957, "splay_distance": 3.646, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": -99.940, "theta": 167.433, "eta_prime": -114.871, "theta_prime": 176.811, "eta_base": -96.991, "theta_base": -160.476, "v0": 2.297, "v1": -23.896, "v2": 35.209, "v3": -34.845, "v4": 20.537, "amplitude": 36.464, "phase_angle": 15.076, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 192.822, 251.748, 255.054 ], "x_axis": [ -0.585, 0.114, 0.803 ], "y_axis": [ -0.736, 0.343, -0.584 ], "z_axis": [ -0.342, -0.933, -0.117 ], "quaternion": [ -0.400, -0.217, 0.715, -0.530 ] } }, { "index": 1555, "index_chain": 1555, "chain_name": "A", "nt_resnum": 1633, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1633", "linked_nts": [ "///A/1632", "///A/1634" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 150.924, "beta": -149.299, "gamma": 177.355, "delta": 81.861, "epsilon": -171.761, "zeta": -76.950, "epsilon_zeta": -94.811, "bb_type": "BI", "chi": 175.842, "glyco_bond": "anti", "C5prime_xyz": [ -1.581, 8.377, 1.886 ], "P_xyz": [ 0.261, 10.028, 1.046 ], "form": "A", "ssZp": 4.218, "Dp": 4.385, "splay_angle": 23.635, "splay_distance": 3.489, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 169.921, "theta": -166.769, "eta_prime": -172.563, "theta_prime": -161.613, "eta_base": -133.446, "theta_base": -131.675, "v0": 0.751, "v1": -22.066, "v2": 33.833, "v3": -34.367, "v4": 21.252, "amplitude": 35.472, "phase_angle": 17.485, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.808, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 192.927, 248.409, 256.514 ], "x_axis": [ -0.819, 0.297, 0.490 ], "y_axis": [ -0.435, 0.233, -0.869 ], "z_axis": [ -0.373, -0.926, -0.062 ], "quaternion": [ -0.297, -0.047, 0.727, -0.617 ] } }, { "index": 1556, "index_chain": 1556, "chain_name": "A", "nt_resnum": 1634, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1634", "linked_nts": [ "///A/1633", "///A/1635" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -138.175, "beta": -131.890, "gamma": 92.527, "delta": 83.235, "epsilon": -152.916, "zeta": -77.859, "epsilon_zeta": -75.057, "bb_type": "BI", "chi": -164.752, "glyco_bond": "anti", "C5prime_xyz": [ -1.532, 8.668, 0.802 ], "P_xyz": [ 1.054, 8.478, 1.118 ], "form": "A", "ssZp": 4.457, "Dp": 4.551, "splay_angle": 22.752, "splay_distance": 3.645, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 163.222, "theta": -140.614, "eta_prime": 173.859, "theta_prime": -144.704, "eta_base": -147.969, "theta_base": -129.252, "v0": 0.903, "v1": -22.677, "v2": 34.568, "v3": -35.033, "v4": 21.553, "amplitude": 36.193, "phase_angle": 17.236, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.007, "origin": [ 192.481, 245.160, 257.705 ], "x_axis": [ -0.893, 0.418, -0.166 ], "y_axis": [ 0.177, -0.012, -0.984 ], "z_axis": [ -0.413, -0.908, -0.064 ], "quaternion": [ -0.089, 0.213, 0.697, -0.679 ] } }, { "index": 1557, "index_chain": 1557, "chain_name": "A", "nt_resnum": 1635, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1635", "linked_nts": [ "///A/1634", "///A/1636" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -57.527, "beta": 169.367, "gamma": 50.579, "delta": 81.960, "epsilon": -165.947, "zeta": -76.618, "epsilon_zeta": -89.328, "bb_type": "BI", "chi": -165.221, "glyco_bond": "anti", "C5prime_xyz": [ -1.502, 8.792, 0.826 ], "P_xyz": [ 1.016, 9.256, 1.370 ], "form": "A", "ssZp": 4.329, "Dp": 4.383, "splay_angle": 23.131, "splay_distance": 3.845, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 169.222, "theta": -129.999, "eta_prime": -177.560, "theta_prime": -141.086, "eta_base": -143.031, "theta_base": -117.216, "v0": -1.900, "v1": -19.932, "v2": 32.953, "v3": -34.973, "v4": 23.258, "amplitude": 35.447, "phase_angle": 21.622, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.912, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 190.704, 242.345, 259.190 ], "x_axis": [ -0.633, 0.472, -0.614 ], "y_axis": [ 0.591, -0.218, -0.776 ], "z_axis": [ -0.500, -0.854, -0.141 ], "quaternion": [ -0.046, -0.426, -0.624, 0.654 ] } }, { "index": 1558, "index_chain": 1558, "chain_name": "A", "nt_resnum": 1636, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1636", "linked_nts": [ "///A/1635", "///A/1637" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 159.532, "beta": -161.090, "gamma": 162.730, "delta": 80.194, "epsilon": -116.685, "zeta": -95.068, "epsilon_zeta": -21.617, "bb_type": "--", "chi": 171.633, "glyco_bond": "anti", "C5prime_xyz": [ -1.442, 8.046, 2.119 ], "P_xyz": [ 0.520, 9.655, 1.503 ], "form": "A", "ssZp": 4.832, "Dp": 4.820, "splay_angle": 25.487, "splay_distance": 3.948, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 156.308, "theta": -159.879, "eta_prime": 170.467, "theta_prime": -154.837, "eta_base": -144.048, "theta_base": -127.390, "v0": 5.916, "v1": -27.709, "v2": 37.887, "v3": -35.528, "v4": 18.657, "amplitude": 38.471, "phase_angle": 10.000, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.535, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 187.474, 240.298, 259.590 ], "x_axis": [ -0.186, 0.367, -0.912 ], "y_axis": [ 0.856, -0.395, -0.333 ], "z_axis": [ -0.482, -0.842, -0.241 ], "quaternion": [ 0.211, 0.602, 0.508, -0.579 ] } }, { "index": 1559, "index_chain": 1559, "chain_name": "A", "nt_resnum": 1637, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1637", "linked_nts": [ "///A/1636", "///A/1638" ], "nt_type": "RNA", "dbn": ")", "summary": "k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -50.702, "beta": 143.060, "gamma": 63.805, "delta": 78.563, "epsilon": -134.449, "zeta": -79.630, "epsilon_zeta": -54.818, "bb_type": "BI", "chi": 176.394, "glyco_bond": "anti", "C5prime_xyz": [ -2.009, 8.414, 1.814 ], "P_xyz": [ 0.531, 8.972, 1.837 ], "form": "A", "ssZp": 4.668, "Dp": 4.673, "splay_angle": 26.145, "splay_distance": 3.957, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 169.329, "theta": -136.896, "eta_prime": -173.687, "theta_prime": -137.784, "eta_base": -132.351, "theta_base": -92.142, "v0": -1.161, "v1": -22.425, "v2": 36.142, "v3": -37.856, "v4": 24.577, "amplitude": 38.538, "phase_angle": 20.310, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.893, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 183.957, 238.771, 258.652 ], "x_axis": [ 0.293, 0.119, -0.949 ], "y_axis": [ 0.838, -0.509, 0.195 ], "z_axis": [ -0.459, -0.853, -0.249 ], "quaternion": [ 0.366, 0.716, 0.334, -0.492 ] } }, { "index": 1560, "index_chain": 1560, "chain_name": "A", "nt_resnum": 1638, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1638", "linked_nts": [ "///A/1637", "///A/1639" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -52.173, "beta": 165.115, "gamma": 46.658, "delta": 83.443, "epsilon": -148.312, "zeta": -66.983, "epsilon_zeta": -81.329, "bb_type": "BI", "chi": -172.427, "glyco_bond": "anti", "C5prime_xyz": [ -1.252, 8.519, 1.279 ], "P_xyz": [ 1.281, 8.606, 1.937 ], "form": "A", "ssZp": 4.550, "Dp": 4.589, "splay_angle": 22.020, "splay_distance": 3.593, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 166.427, "theta": -136.567, "eta_prime": -176.429, "theta_prime": -136.799, "eta_base": -109.535, "theta_base": -114.369, "v0": 2.333, "v1": -23.462, "v2": 34.479, "v3": -34.083, "v4": 20.058, "amplitude": 35.688, "phase_angle": 14.956, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.726, "filter_rmsd": 0.043, "frame": { "rmsd": 0.012, "origin": [ 182.640, 236.489, 255.700 ], "x_axis": [ 0.866, -0.272, -0.420 ], "y_axis": [ 0.312, -0.361, 0.879 ], "z_axis": [ -0.391, -0.892, -0.227 ], "quaternion": [ 0.565, 0.783, 0.013, -0.259 ] } }, { "index": 1561, "index_chain": 1561, "chain_name": "A", "nt_resnum": 1639, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1639", "linked_nts": [ "///A/1638", "///A/1640" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.299, "beta": 174.868, "gamma": 51.732, "delta": 78.834, "epsilon": -169.678, "zeta": -83.385, "epsilon_zeta": -86.292, "bb_type": "BI", "chi": -166.787, "glyco_bond": "anti", "C5prime_xyz": [ -1.666, 8.763, 0.878 ], "P_xyz": [ 0.796, 9.438, 1.396 ], "form": "A", "ssZp": 4.421, "Dp": 4.446, "splay_angle": 23.237, "splay_distance": 3.899, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": 162.706, "theta": -138.245, "eta_prime": -179.169, "theta_prime": -144.230, "eta_base": -136.336, "theta_base": -119.536, "v0": -1.246, "v1": -22.229, "v2": 35.945, "v3": -37.682, "v4": 24.551, "amplitude": 38.363, "phase_angle": 20.449, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.969, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 181.563, 234.299, 253.063 ], "x_axis": [ 0.921, -0.371, 0.121 ], "y_axis": [ -0.201, -0.184, 0.962 ], "z_axis": [ -0.334, -0.910, -0.244 ], "quaternion": [ 0.611, 0.766, -0.187, -0.069 ] } }, { "index": 1562, "index_chain": 1562, "chain_name": "A", "nt_resnum": 1640, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1640", "linked_nts": [ "///A/1639", "///A/1641" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor", "alpha": 157.350, "beta": -146.348, "gamma": 171.374, "delta": 82.020, "epsilon": -127.659, "zeta": -88.901, "epsilon_zeta": -38.758, "bb_type": "--", "chi": 171.737, "glyco_bond": "anti", "C5prime_xyz": [ -1.636, 8.210, 2.108 ], "P_xyz": [ 0.372, 9.724, 1.393 ], "form": "A", "ssZp": 4.624, "Dp": 4.688, "splay_angle": 22.512, "splay_distance": 3.486, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 169.507, "theta": -161.457, "eta_prime": -175.758, "theta_prime": -158.772, "eta_base": -131.665, "theta_base": -133.923, "v0": 2.727, "v1": -24.375, "v2": 35.579, "v3": -35.019, "v4": 20.391, "amplitude": 36.749, "phase_angle": 14.494, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.692, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 181.913, 231.439, 250.437 ], "x_axis": [ 0.690, -0.425, 0.586 ], "y_axis": [ -0.634, 0.038, 0.773 ], "z_axis": [ -0.350, -0.904, -0.243 ], "quaternion": [ 0.609, 0.688, -0.385, 0.086 ] } }, { "index": 1563, "index_chain": 1563, "chain_name": "A", "nt_resnum": 1641, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1641", "linked_nts": [ "///A/1640", "///A/1642" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -58.820, "beta": 167.327, "gamma": 49.735, "delta": 83.209, "epsilon": -143.307, "zeta": -73.010, "epsilon_zeta": -70.297, "bb_type": "BI", "chi": -164.555, "glyco_bond": "anti", "C5prime_xyz": [ -1.389, 8.649, 0.810 ], "P_xyz": [ 1.184, 8.945, 1.177 ], "form": "A", "ssZp": 4.467, "Dp": 4.616, "splay_angle": 21.718, "splay_distance": 3.619, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 167.056, "theta": -137.819, "eta_prime": 178.821, "theta_prime": -136.594, "eta_base": -146.008, "theta_base": -113.928, "v0": 1.982, "v1": -23.351, "v2": 34.646, "v3": -34.468, "v4": 20.499, "amplitude": 35.959, "phase_angle": 15.531, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.620, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 182.258, 228.674, 248.341 ], "x_axis": [ 0.197, -0.316, 0.928 ], "y_axis": [ -0.937, 0.219, 0.273 ], "z_axis": [ -0.290, -0.923, -0.253 ], "quaternion": [ 0.539, 0.555, -0.565, 0.288 ] } }, { "index": 1564, "index_chain": 1564, "chain_name": "A", "nt_resnum": 1642, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1642", "linked_nts": [ "///A/1641", "///A/1643" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -57.963, "beta": 165.848, "gamma": 59.494, "delta": 79.208, "epsilon": -121.278, "zeta": 165.593, "epsilon_zeta": 73.129, "bb_type": "BII", "chi": -150.004, "glyco_bond": "anti", "C5prime_xyz": [ -1.848, 8.933, -0.129 ], "P_xyz": [ 0.601, 9.741, -0.496 ], "form": ".", "ssZp": 3.770, "Dp": 4.560, "splay_angle": 94.227, "splay_distance": 13.612, "splay_ratio": 0.734, "d22": null, "d64": null, "eta": 179.181, "theta": 105.079, "eta_prime": -166.968, "theta_prime": 118.962, "eta_base": -132.853, "theta_base": 150.256, "v0": -4.964, "v1": -18.696, "v2": 33.796, "v3": -37.669, "v4": 26.901, "amplitude": 37.617, "phase_angle": 26.048, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.888, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 183.086, 225.152, 248.260 ], "x_axis": [ -0.305, -0.230, 0.924 ], "y_axis": [ -0.948, 0.163, -0.273 ], "z_axis": [ -0.088, -0.959, -0.268 ], "quaternion": [ -0.384, -0.447, 0.659, -0.468 ] } }, { "index": 1565, "index_chain": 1565, "chain_name": "A", "nt_resnum": 1643, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1643", "linked_nts": [ "///A/1642", "///A/1644" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,helix-end,stem-end,junction-loop,splayed-apart", "alpha": -75.400, "beta": 148.789, "gamma": 56.958, "delta": 83.015, "epsilon": -148.349, "zeta": -71.452, "epsilon_zeta": -76.896, "bb_type": "BI", "chi": -174.521, "glyco_bond": "anti", "C5prime_xyz": [ -1.257, 8.559, 1.368 ], "P_xyz": [ 1.357, 8.586, 1.437 ], "form": "A", "ssZp": 4.554, "Dp": 4.585, "splay_angle": 22.287, "splay_distance": 3.557, "splay_ratio": 0.196, "d22": 4.568, "d64": 4.598, "eta": -171.160, "theta": -138.510, "eta_prime": -175.438, "theta_prime": -141.994, "eta_base": 171.935, "theta_base": -124.890, "v0": 1.660, "v1": -23.159, "v2": 34.576, "v3": -34.583, "v4": 20.797, "amplitude": 35.974, "phase_angle": 16.023, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.539, "filter_rmsd": 0.064, "frame": { "rmsd": 0.006, "origin": [ 180.359, 222.054, 235.288 ], "x_axis": [ 0.650, -0.298, 0.699 ], "y_axis": [ -0.598, 0.368, 0.712 ], "z_axis": [ -0.470, -0.881, 0.061 ], "quaternion": [ 0.721, 0.552, -0.405, 0.104 ] } }, { "index": 1566, "index_chain": 1566, "chain_name": "A", "nt_resnum": 1644, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1644", "linked_nts": [ "///A/1643", "///A/1645" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -73.544, "beta": 176.400, "gamma": 58.918, "delta": 81.846, "epsilon": -152.075, "zeta": -67.698, "epsilon_zeta": -84.377, "bb_type": "BI", "chi": -164.438, "glyco_bond": "anti", "C5prime_xyz": [ -1.412, 8.766, 0.776 ], "P_xyz": [ 1.136, 9.241, 1.118 ], "form": "A", "ssZp": 4.444, "Dp": 4.539, "splay_angle": 29.722, "splay_distance": 4.707, "splay_ratio": 0.257, "d22": 4.353, "d64": 4.490, "eta": 166.661, "theta": -143.102, "eta_prime": -179.252, "theta_prime": -142.137, "eta_base": -143.600, "theta_base": -115.618, "v0": -0.584, "v1": -21.556, "v2": 34.197, "v3": -35.492, "v4": 22.758, "amplitude": 36.279, "phase_angle": 19.504, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.899, "filter_rmsd": 0.059, "frame": { "rmsd": 0.009, "origin": [ 180.225, 218.633, 234.325 ], "x_axis": [ 0.256, -0.024, 0.966 ], "y_axis": [ -0.872, 0.425, 0.242 ], "z_axis": [ -0.417, -0.905, 0.088 ], "quaternion": [ 0.665, 0.431, -0.520, 0.319 ] } }, { "index": 1567, "index_chain": 1567, "chain_name": "A", "nt_resnum": 1645, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1645", "linked_nts": [ "///A/1644", "///A/1646" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -72.322, "beta": -171.175, "gamma": 47.862, "delta": 81.470, "epsilon": -150.711, "zeta": -64.142, "epsilon_zeta": -86.569, "bb_type": "BI", "chi": -170.930, "glyco_bond": "anti", "C5prime_xyz": [ -1.446, 8.629, 1.157 ], "P_xyz": [ 0.908, 9.036, 2.200 ], "form": "A", "ssZp": 4.567, "Dp": 4.600, "splay_angle": 17.809, "splay_distance": 3.099, "splay_ratio": 0.167, "d22": null, "d64": null, "eta": 166.539, "theta": -141.098, "eta_prime": 177.535, "theta_prime": -138.305, "eta_base": -142.844, "theta_base": -112.991, "v0": 1.320, "v1": -23.616, "v2": 35.645, "v3": -35.852, "v4": 21.790, "amplitude": 37.195, "phase_angle": 16.601, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.842, "filter_rmsd": 0.059, "frame": { "rmsd": 0.010, "origin": [ 179.733, 214.088, 235.449 ], "x_axis": [ -0.089, 0.542, 0.836 ], "y_axis": [ -0.758, 0.508, -0.410 ], "z_axis": [ -0.646, -0.670, 0.365 ], "quaternion": [ 0.668, 0.097, -0.555, 0.487 ] } }, { "index": 1568, "index_chain": 1568, "chain_name": "A", "nt_resnum": 1646, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1646", "linked_nts": [ "///A/1645", "///A/1647" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate", "alpha": -71.490, "beta": 174.010, "gamma": 62.405, "delta": 78.873, "epsilon": -138.554, "zeta": -68.486, "epsilon_zeta": -70.068, "bb_type": "BI", "chi": -153.491, "glyco_bond": "anti", "C5prime_xyz": [ -1.842, 8.932, 0.072 ], "P_xyz": [ 0.602, 9.841, -0.113 ], "form": ".", "ssZp": 4.108, "Dp": 4.555, "splay_angle": 25.062, "splay_distance": 4.098, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 170.817, "theta": -136.143, "eta_prime": -174.114, "theta_prime": -126.626, "eta_base": -136.849, "theta_base": -89.074, "v0": -4.840, "v1": -18.802, "v2": 33.830, "v3": -37.608, "v4": 26.767, "amplitude": 37.587, "phase_angle": 25.836, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.824, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 179.695, 212.194, 237.901 ], "x_axis": [ -0.506, 0.662, 0.553 ], "y_axis": [ -0.745, -0.013, -0.666 ], "z_axis": [ -0.434, -0.750, 0.500 ], "quaternion": [ 0.495, 0.042, -0.498, 0.711 ] } }, { "index": 1569, "index_chain": 1569, "chain_name": "A", "nt_resnum": 1647, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1647", "linked_nts": [ "///A/1646", "///A/1648" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart", "alpha": -64.721, "beta": 177.193, "gamma": 63.997, "delta": 144.401, "epsilon": -94.678, "zeta": -60.423, "epsilon_zeta": -34.255, "bb_type": "--", "chi": -122.612, "glyco_bond": "anti", "C5prime_xyz": [ -2.079, 8.568, -1.126 ], "P_xyz": [ 0.361, 9.425, -0.703 ], "form": ".", "ssZp": 0.814, "Dp": 0.858, "splay_angle": 135.380, "splay_distance": 17.910, "splay_ratio": 0.925, "d22": null, "d64": null, "eta": -164.307, "theta": -40.330, "eta_prime": -134.550, "theta_prime": -60.406, "eta_base": -96.077, "theta_base": -27.600, "v0": -22.870, "v1": 35.879, "v2": -34.430, "v3": 22.107, "v4": 0.266, "amplitude": 36.458, "phase_angle": 160.796, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.865, "filter_rmsd": 0.103, "frame": { "rmsd": 0.009, "origin": [ 176.552, 211.995, 240.522 ], "x_axis": [ -0.485, 0.796, -0.363 ], "y_axis": [ -0.375, -0.564, -0.736 ], "z_axis": [ -0.790, -0.221, 0.572 ], "quaternion": [ 0.362, -0.356, -0.295, 0.809 ] } }, { "index": 1570, "index_chain": 1570, "chain_name": "A", "nt_resnum": 1648, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1648", "linked_nts": [ "///A/1647", "///A/1649" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,bulge,junction-loop,splayed-apart", "alpha": -73.237, "beta": -155.253, "gamma": 59.869, "delta": 83.621, "epsilon": -131.197, "zeta": -61.501, "epsilon_zeta": -69.696, "bb_type": "BI", "chi": 177.215, "glyco_bond": "anti", "C5prime_xyz": [ -1.844, 8.436, 1.765 ], "P_xyz": [ 0.173, 8.583, 3.425 ], "form": ".", "ssZp": 4.421, "Dp": 4.497, "splay_angle": 26.758, "splay_distance": 4.254, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 172.525, "theta": -119.674, "eta_prime": -148.241, "theta_prime": -115.520, "eta_base": -138.901, "theta_base": -55.131, "v0": -2.736, "v1": -18.634, "v2": 31.549, "v3": -34.026, "v4": 23.204, "amplitude": 34.288, "phase_angle": 23.058, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.826, "filter_rmsd": 0.045, "frame": { "rmsd": 0.011, "origin": [ 170.143, 197.878, 231.556 ], "x_axis": [ 0.300, 0.593, -0.747 ], "y_axis": [ 0.292, 0.688, 0.664 ], "z_axis": [ 0.908, -0.418, 0.033 ], "quaternion": [ 0.711, 0.380, 0.582, 0.106 ] } }, { "index": 1571, "index_chain": 1571, "chain_name": "A", "nt_resnum": 1649, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1649", "linked_nts": [ "///A/1648", "///A/1650" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,bulge", "alpha": -73.265, "beta": 166.783, "gamma": 56.385, "delta": 81.828, "epsilon": -138.852, "zeta": -86.249, "epsilon_zeta": -52.603, "bb_type": "BI", "chi": -163.355, "glyco_bond": "anti", "C5prime_xyz": [ -1.377, 8.808, 0.697 ], "P_xyz": [ 1.191, 9.260, 0.908 ], "form": "A", "ssZp": 4.386, "Dp": 4.580, "splay_angle": 23.426, "splay_distance": 3.773, "splay_ratio": 0.203, "d22": 4.868, "d64": 4.578, "eta": 154.464, "theta": -150.378, "eta_prime": -179.708, "theta_prime": -147.772, "eta_base": -99.213, "theta_base": -133.076, "v0": -1.173, "v1": -20.802, "v2": 33.514, "v3": -35.141, "v4": 22.952, "amplitude": 35.769, "phase_angle": 20.451, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.767, "filter_rmsd": 0.062, "frame": { "rmsd": 0.008, "origin": [ 173.948, 198.761, 229.872 ], "x_axis": [ 0.383, 0.905, 0.184 ], "y_axis": [ -0.056, -0.176, 0.983 ], "z_axis": [ 0.922, -0.387, -0.017 ], "quaternion": [ 0.546, 0.628, 0.338, 0.440 ] } }, { "index": 1572, "index_chain": 1572, "chain_name": "A", "nt_resnum": 1650, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1650", "linked_nts": [ "///A/1649", "///A/1651" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop", "alpha": -68.812, "beta": 169.722, "gamma": 58.159, "delta": 83.769, "epsilon": -114.976, "zeta": -92.201, "epsilon_zeta": -22.775, "bb_type": "--", "chi": -149.701, "glyco_bond": "anti", "C5prime_xyz": [ -1.469, 8.842, -0.085 ], "P_xyz": [ 1.107, 9.296, -0.195 ], "form": ".", "ssZp": 3.667, "Dp": 4.560, "splay_angle": 41.621, "splay_distance": 6.594, "splay_ratio": 0.363, "d22": null, "d64": null, "eta": 176.381, "theta": -110.627, "eta_prime": -176.804, "theta_prime": -120.969, "eta_base": -157.440, "theta_base": -68.902, "v0": -0.690, "v1": -20.692, "v2": 32.961, "v3": -34.257, "v4": 22.070, "amplitude": 35.011, "phase_angle": 19.701, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.790, "filter_rmsd": 0.061, "frame": { "rmsd": 0.009, "origin": [ 177.221, 197.530, 228.455 ], "x_axis": [ 0.129, 0.791, 0.598 ], "y_axis": [ -0.085, -0.592, 0.802 ], "z_axis": [ 0.988, -0.154, -0.009 ], "quaternion": [ 0.363, 0.658, 0.269, 0.603 ] } }, { "index": 1573, "index_chain": 1573, "chain_name": "A", "nt_resnum": 1651, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1651", "linked_nts": [ "///A/1650", "///A/1652" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,junction-loop,cap-donor,splayed-apart", "alpha": 83.184, "beta": -122.679, "gamma": -120.523, "delta": 85.886, "epsilon": -94.485, "zeta": -178.393, "epsilon_zeta": 83.908, "bb_type": "BII", "chi": 21.517, "glyco_bond": "syn", "C5prime_xyz": [ -5.566, 3.683, -0.329 ], "P_xyz": [ -7.543, 3.313, 1.328 ], "form": ".", "ssZp": -3.628, "Dp": 4.289, "splay_angle": 144.698, "splay_distance": 18.189, "splay_ratio": 0.953, "d22": null, "d64": null, "eta": -174.017, "theta": 66.084, "eta_prime": -166.777, "theta_prime": 103.268, "eta_base": -96.436, "theta_base": 145.036, "v0": -4.854, "v1": -16.331, "v2": 29.900, "v3": -33.550, "v4": 24.268, "amplitude": 33.477, "phase_angle": 26.729, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.018, "frame": { "rmsd": 0.018, "origin": [ 181.038, 197.975, 233.813 ], "x_axis": [ -0.014, 0.916, -0.401 ], "y_axis": [ -0.016, -0.401, -0.916 ], "z_axis": [ -1.000, -0.007, 0.020 ], "quaternion": [ 0.389, -0.585, -0.385, 0.599 ] } }, { "index": 1574, "index_chain": 1574, "chain_name": "A", "nt_resnum": 1652, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1652", "linked_nts": [ "///A/1651", "///A/1653" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": -144.306, "beta": 133.196, "gamma": 167.643, "delta": 136.243, "epsilon": 53.257, "zeta": -67.315, "epsilon_zeta": -239.428, "bb_type": "--", "chi": -148.133, "glyco_bond": "anti", "C5prime_xyz": [ -1.429, 8.656, 0.296 ], "P_xyz": [ -0.089, 10.309, -1.211 ], "form": ".", "ssZp": -0.172, "Dp": 0.917, "splay_angle": 77.475, "splay_distance": 11.503, "splay_ratio": 0.627, "d22": null, "d64": null, "eta": -14.779, "theta": 10.587, "eta_prime": -84.088, "theta_prime": 60.384, "eta_base": -150.406, "theta_base": 45.456, "v0": -16.000, "v1": 27.249, "v2": -27.561, "v3": 19.075, "v4": -2.126, "amplitude": 28.477, "phase_angle": 165.430, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 190.423, 185.897, 223.970 ], "x_axis": [ 0.541, 0.834, -0.109 ], "y_axis": [ -0.472, 0.408, 0.781 ], "z_axis": [ 0.696, -0.371, 0.614 ], "quaternion": [ 0.801, 0.360, 0.252, 0.408 ] } }, { "index": 1575, "index_chain": 1575, "chain_name": "A", "nt_resnum": 1653, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1653", "linked_nts": [ "///A/1652", "///A/1654" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,phosphate,splayed-apart", "alpha": -77.419, "beta": -132.748, "gamma": 49.256, "delta": 141.125, "epsilon": -124.573, "zeta": -156.816, "epsilon_zeta": 32.242, "bb_type": "--", "chi": -80.548, "glyco_bond": "anti", "C5prime_xyz": [ -2.795, 7.344, -2.812 ], "P_xyz": [ -0.822, 9.036, -3.096 ], "form": ".", "ssZp": 0.944, "Dp": 1.688, "splay_angle": 111.385, "splay_distance": 17.093, "splay_ratio": 0.826, "d22": null, "d64": null, "eta": 176.132, "theta": -134.212, "eta_prime": 163.553, "theta_prime": -175.546, "eta_base": 135.820, "theta_base": 165.893, "v0": -22.462, "v1": 33.917, "v2": -31.831, "v3": 19.688, "v4": 1.552, "amplitude": 34.171, "phase_angle": 158.676, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.012, "origin": [ 180.982, 192.195, 225.848 ], "x_axis": [ 0.801, 0.127, -0.585 ], "y_axis": [ 0.226, -0.969, 0.100 ], "z_axis": [ -0.554, -0.213, -0.805 ], "quaternion": [ 0.083, 0.945, 0.093, -0.301 ] } }, { "index": 1576, "index_chain": 1576, "chain_name": "A", "nt_resnum": 1654, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1654", "linked_nts": [ "///A/1653", "///A/1655" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": 104.337, "beta": -143.759, "gamma": 23.495, "delta": 143.958, "epsilon": -99.395, "zeta": -128.785, "epsilon_zeta": 29.391, "bb_type": "--", "chi": -133.749, "glyco_bond": "anti", "C5prime_xyz": [ -1.761, 8.654, -0.492 ], "P_xyz": [ -0.694, 10.196, 1.335 ], "form": ".", "ssZp": 1.061, "Dp": 1.112, "splay_angle": 65.268, "splay_distance": 10.261, "splay_ratio": 0.543, "d22": null, "d64": null, "eta": 8.413, "theta": -110.045, "eta_prime": 21.598, "theta_prime": -119.463, "eta_base": 30.645, "theta_base": -79.701, "v0": -20.897, "v1": 33.948, "v2": -33.360, "v3": 22.154, "v4": -1.002, "amplitude": 34.913, "phase_angle": 162.848, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 168.285, 181.356, 229.514 ], "x_axis": [ 0.056, -0.669, 0.741 ], "y_axis": [ 0.995, -0.022, -0.095 ], "z_axis": [ 0.080, 0.743, 0.665 ], "quaternion": [ 0.652, -0.321, -0.254, -0.639 ] } }, { "index": 1577, "index_chain": 1577, "chain_name": "A", "nt_resnum": 1655, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1655", "linked_nts": [ "///A/1654", "///A/1656" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,BI,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": 38.608, "beta": -156.527, "gamma": -69.676, "delta": 148.131, "epsilon": -134.621, "zeta": -42.107, "epsilon_zeta": -92.514, "bb_type": "BI", "chi": 48.336, "glyco_bond": "syn", "C5prime_xyz": [ -5.559, 3.974, 0.560 ], "P_xyz": [ -8.070, 3.273, 0.837 ], "form": ".", "ssZp": -1.562, "Dp": 1.670, "splay_angle": 93.490, "splay_distance": 13.857, "splay_ratio": 0.729, "d22": null, "d64": null, "eta": -159.916, "theta": -76.720, "eta_prime": -144.721, "theta_prime": -71.827, "eta_base": -115.852, "theta_base": -46.122, "v0": -24.952, "v1": 39.243, "v2": -37.591, "v3": 24.203, "v4": 0.285, "amplitude": 39.803, "phase_angle": 160.805, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.014, "origin": [ 173.839, 189.345, 232.771 ], "x_axis": [ -0.534, 0.557, 0.636 ], "y_axis": [ -0.403, 0.493, -0.771 ], "z_axis": [ -0.743, -0.668, -0.039 ], "quaternion": [ -0.480, 0.053, 0.719, -0.500 ] } }, { "index": 1578, "index_chain": 1578, "chain_name": "A", "nt_resnum": 1656, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1656", "linked_nts": [ "///A/1655", "///A/1657" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate,splayed-apart", "alpha": -120.519, "beta": -105.418, "gamma": 59.420, "delta": 146.230, "epsilon": -157.300, "zeta": -127.319, "epsilon_zeta": -29.981, "bb_type": "--", "chi": -134.650, "glyco_bond": "anti", "C5prime_xyz": [ -1.641, 8.713, -0.387 ], "P_xyz": [ 0.020, 8.849, 1.658 ], "form": ".", "ssZp": 2.797, "Dp": 2.433, "splay_angle": 22.753, "splay_distance": 4.007, "splay_ratio": 0.203, "d22": 4.583, "d64": 4.494, "eta": 154.142, "theta": -117.580, "eta_prime": -160.079, "theta_prime": -134.585, "eta_base": -157.819, "theta_base": -107.577, "v0": -22.139, "v1": 35.778, "v2": -34.671, "v3": 22.635, "v4": -0.348, "amplitude": 36.482, "phase_angle": 161.873, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.014, "origin": [ 182.782, 188.096, 222.261 ], "x_axis": [ -0.245, -0.731, 0.637 ], "y_axis": [ -0.848, 0.480, 0.224 ], "z_axis": [ -0.469, -0.486, -0.737 ], "quaternion": [ -0.353, -0.503, 0.785, -0.084 ] } }, { "index": 1579, "index_chain": 1579, "chain_name": "A", "nt_resnum": 1657, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1657", "linked_nts": [ "///A/1656", "///A/1658" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,phosphate", "alpha": 8.223, "beta": 157.818, "gamma": -36.394, "delta": 84.587, "epsilon": -166.790, "zeta": -61.532, "epsilon_zeta": -105.258, "bb_type": "BI", "chi": -143.389, "glyco_bond": "anti", "C5prime_xyz": [ -1.137, 8.716, -0.494 ], "P_xyz": [ 0.722, 10.322, 0.440 ], "form": ".", "ssZp": 3.937, "Dp": 4.479, "splay_angle": 22.861, "splay_distance": 4.235, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 148.162, "theta": -137.649, "eta_prime": 154.205, "theta_prime": -139.777, "eta_base": -158.164, "theta_base": -120.104, "v0": 3.568, "v1": -24.516, "v2": 34.910, "v3": -33.717, "v4": 19.100, "amplitude": 35.823, "phase_angle": 12.963, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.072, "frame": { "rmsd": 0.014, "origin": [ 182.289, 185.503, 219.245 ], "x_axis": [ -0.619, -0.272, 0.736 ], "y_axis": [ -0.491, 0.866, -0.092 ], "z_axis": [ -0.613, -0.419, -0.670 ], "quaternion": [ -0.380, -0.215, 0.888, -0.144 ] } }, { "index": 1580, "index_chain": 1580, "chain_name": "A", "nt_resnum": 1658, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1658", "linked_nts": [ "///A/1657", "///A/1659" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 142.414, "beta": -166.992, "gamma": -170.749, "delta": 78.288, "epsilon": -156.318, "zeta": 52.787, "epsilon_zeta": 150.896, "bb_type": "--", "chi": -165.657, "glyco_bond": "anti", "C5prime_xyz": [ -1.424, 8.715, 0.797 ], "P_xyz": [ -0.586, 10.728, -0.675 ], "form": ".", "ssZp": 4.597, "Dp": 4.660, "splay_angle": 108.437, "splay_distance": 13.780, "splay_ratio": 0.811, "d22": null, "d64": null, "eta": 165.950, "theta": -25.610, "eta_prime": -177.268, "theta_prime": -59.009, "eta_base": -145.174, "theta_base": -143.751, "v0": 2.621, "v1": -26.083, "v2": 38.328, "v3": -37.834, "v4": 22.198, "amplitude": 39.657, "phase_angle": 14.873, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.710, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 180.084, 181.975, 218.453 ], "x_axis": [ -0.691, 0.073, 0.719 ], "y_axis": [ -0.328, 0.856, -0.401 ], "z_axis": [ -0.645, -0.513, -0.567 ], "quaternion": [ -0.387, -0.072, 0.882, -0.259 ] } }, { "index": 1581, "index_chain": 1581, "chain_name": "A", "nt_resnum": 1659, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1659", "linked_nts": [ "///A/1658", "///A/1660" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 54.970, "beta": 122.693, "gamma": 60.078, "delta": 83.029, "epsilon": -123.637, "zeta": -103.158, "epsilon_zeta": -20.479, "bb_type": "--", "chi": -150.869, "glyco_bond": "anti", "C5prime_xyz": [ -1.344, 8.692, -0.044 ], "P_xyz": [ 0.981, 8.272, -1.197 ], "form": ".", "ssZp": 3.946, "Dp": 4.733, "splay_angle": 55.473, "splay_distance": 8.903, "splay_ratio": 0.466, "d22": null, "d64": null, "eta": -75.106, "theta": -104.347, "eta_prime": -15.953, "theta_prime": -104.716, "eta_base": 64.337, "theta_base": -91.640, "v0": 2.832, "v1": -24.353, "v2": 35.321, "v3": -34.679, "v4": 20.109, "amplitude": 36.442, "phase_angle": 14.248, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "5d", "suiteness": 0.615, "filter_rmsd": 0.038, "frame": { "rmsd": 0.010, "origin": [ 171.056, 179.750, 208.284 ], "x_axis": [ 0.759, -0.650, 0.034 ], "y_axis": [ 0.560, 0.680, 0.474 ], "z_axis": [ -0.331, -0.341, 0.880 ], "quaternion": [ 0.911, 0.224, -0.100, -0.332 ] } }, { "index": 1582, "index_chain": 1582, "chain_name": "A", "nt_resnum": 1660, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1660", "linked_nts": [ "///A/1659", "///A/1661" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 58.162, "beta": 138.720, "gamma": -12.541, "delta": 149.234, "epsilon": -140.891, "zeta": -87.426, "epsilon_zeta": -53.466, "bb_type": "BI", "chi": -137.678, "glyco_bond": "anti", "C5prime_xyz": [ -1.567, 8.691, -0.244 ], "P_xyz": [ -0.153, 9.557, 1.790 ], "form": ".", "ssZp": 1.698, "Dp": 1.732, "splay_angle": 106.131, "splay_distance": 15.390, "splay_ratio": 0.799, "d22": null, "d64": null, "eta": -171.349, "theta": -65.383, "eta_prime": -142.269, "theta_prime": -124.513, "eta_base": -116.855, "theta_base": -159.435, "v0": -19.505, "v1": 34.470, "v2": -35.396, "v3": 25.052, "v4": -3.671, "amplitude": 36.334, "phase_angle": 166.949, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 175.238, 176.027, 215.205 ], "x_axis": [ 0.649, 0.188, -0.738 ], "y_axis": [ -0.376, 0.921, -0.096 ], "z_axis": [ 0.662, 0.340, 0.668 ], "quaternion": [ 0.900, -0.121, 0.389, 0.157 ] } }, { "index": 1583, "index_chain": 1583, "chain_name": "A", "nt_resnum": 1661, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1661", "linked_nts": [ "///A/1660", "///A/1662" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 115.098, "beta": 163.948, "gamma": 39.848, "delta": 146.887, "epsilon": -76.273, "zeta": -62.032, "epsilon_zeta": -14.241, "bb_type": "--", "chi": -142.553, "glyco_bond": "anti", "C5prime_xyz": [ -1.944, 8.729, -0.008 ], "P_xyz": [ 0.089, 9.387, 1.509 ], "form": ".", "ssZp": 0.212, "Dp": 0.297, "splay_angle": 147.088, "splay_distance": 18.827, "splay_ratio": 0.959, "d22": null, "d64": null, "eta": -20.552, "theta": -21.865, "eta_prime": 36.812, "theta_prime": -42.151, "eta_base": 47.056, "theta_base": -18.101, "v0": -23.061, "v1": 37.343, "v2": -36.499, "v3": 24.140, "v4": -0.952, "amplitude": 38.260, "phase_angle": 162.549, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 167.709, 178.503, 228.397 ], "x_axis": [ -0.922, 0.385, -0.046 ], "y_axis": [ 0.264, 0.538, -0.800 ], "z_axis": [ -0.284, -0.750, -0.598 ], "quaternion": [ -0.068, 0.186, 0.874, -0.443 ] } }, { "index": 1584, "index_chain": 1584, "chain_name": "A", "nt_resnum": 1662, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1662", "linked_nts": [ "///A/1661", "///A/1663" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -75.444, "beta": -124.217, "gamma": 60.864, "delta": 145.406, "epsilon": -89.259, "zeta": -104.404, "epsilon_zeta": 15.145, "bb_type": "--", "chi": -134.191, "glyco_bond": "anti", "C5prime_xyz": [ -2.045, 8.771, -0.530 ], "P_xyz": [ -0.537, 9.598, 1.446 ], "form": ".", "ssZp": 0.677, "Dp": 0.689, "splay_angle": 103.104, "splay_distance": 15.084, "splay_ratio": 0.784, "d22": null, "d64": null, "eta": -163.201, "theta": -81.092, "eta_prime": -119.996, "theta_prime": -143.918, "eta_base": -130.325, "theta_base": 173.600, "v0": -24.841, "v1": 38.059, "v2": -35.943, "v3": 22.511, "v4": 1.227, "amplitude": 38.402, "phase_angle": 159.384, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.493, "filter_rmsd": 0.060, "frame": { "rmsd": 0.010, "origin": [ 178.335, 182.339, 213.335 ], "x_axis": [ -0.680, 0.726, -0.107 ], "y_axis": [ -0.436, -0.282, 0.855 ], "z_axis": [ 0.590, 0.628, 0.508 ], "quaternion": [ 0.369, 0.154, 0.472, 0.786 ] } }, { "index": 1585, "index_chain": 1585, "chain_name": "A", "nt_resnum": 1663, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1663", "linked_nts": [ "///A/1662", "///A/1664" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -55.414, "beta": -147.847, "gamma": -179.739, "delta": 151.545, "epsilon": -97.331, "zeta": -56.780, "epsilon_zeta": -40.552, "bb_type": "--", "chi": 171.939, "glyco_bond": "anti", "C5prime_xyz": [ -2.331, 7.833, 2.307 ], "P_xyz": [ 0.014, 8.772, 3.005 ], "form": ".", "ssZp": 0.364, "Dp": 0.748, "splay_angle": 124.989, "splay_distance": 16.332, "splay_ratio": 0.888, "d22": null, "d64": null, "eta": 24.880, "theta": -84.665, "eta_prime": 62.784, "theta_prime": -79.076, "eta_base": 84.084, "theta_base": -55.329, "v0": -19.755, "v1": 36.084, "v2": -37.671, "v3": 27.207, "v4": -4.879, "amplitude": 38.453, "phase_angle": 168.422, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "2u", "suiteness": 0.036, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 185.321, 169.689, 217.661 ], "x_axis": [ -0.724, -0.687, 0.064 ], "y_axis": [ -0.496, 0.582, 0.645 ], "z_axis": [ -0.480, 0.435, -0.762 ], "quaternion": [ -0.155, -0.338, 0.876, 0.308 ] } }, { "index": 1586, "index_chain": 1586, "chain_name": "A", "nt_resnum": 1664, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1664", "linked_nts": [ "///A/1663", "///A/1665" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,splayed-apart", "alpha": -75.143, "beta": -168.114, "gamma": 70.392, "delta": 85.687, "epsilon": -144.918, "zeta": -67.564, "epsilon_zeta": -77.354, "bb_type": "BI", "chi": 176.446, "glyco_bond": "anti", "C5prime_xyz": [ -1.306, 8.207, 1.890 ], "P_xyz": [ 1.201, 8.038, 2.636 ], "form": "A", "ssZp": 4.628, "Dp": 4.655, "splay_angle": 24.998, "splay_distance": 3.957, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 168.761, "theta": -132.154, "eta_prime": -145.489, "theta_prime": -131.032, "eta_base": -117.258, "theta_base": -108.362, "v0": 5.657, "v1": -25.676, "v2": 34.860, "v3": -32.520, "v4": 16.989, "amplitude": 35.356, "phase_angle": 9.615, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.451, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 182.160, 185.658, 218.982 ], "x_axis": [ -0.706, -0.308, 0.637 ], "y_axis": [ 0.401, -0.916, 0.002 ], "z_axis": [ 0.583, 0.258, 0.770 ], "quaternion": [ -0.192, 0.331, 0.071, 0.921 ] } }, { "index": 1587, "index_chain": 1587, "chain_name": "A", "nt_resnum": 1665, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1665", "linked_nts": [ "///A/1664", "///A/1666" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop", "alpha": -64.958, "beta": -176.526, "gamma": 50.192, "delta": 83.641, "epsilon": -143.670, "zeta": -73.618, "epsilon_zeta": -70.052, "bb_type": "BI", "chi": -167.015, "glyco_bond": "anti", "C5prime_xyz": [ -1.460, 8.715, 0.961 ], "P_xyz": [ 0.939, 9.114, 1.925 ], "form": "A", "ssZp": 4.407, "Dp": 4.530, "splay_angle": 22.131, "splay_distance": 3.608, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 172.835, "theta": -139.490, "eta_prime": -172.507, "theta_prime": -136.680, "eta_base": -133.300, "theta_base": -105.661, "v0": -0.346, "v1": -20.610, "v2": 32.513, "v3": -33.625, "v4": 21.474, "amplitude": 34.427, "phase_angle": 19.194, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.905, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 182.588, 188.160, 222.017 ], "x_axis": [ -0.365, -0.808, 0.462 ], "y_axis": [ 0.714, -0.561, -0.419 ], "z_axis": [ 0.597, 0.177, 0.782 ], "quaternion": [ -0.463, 0.322, -0.073, 0.823 ] } }, { "index": 1588, "index_chain": 1588, "chain_name": "A", "nt_resnum": 1666, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1666", "linked_nts": [ "///A/1665", "///A/1667" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,junction-loop", "alpha": -54.127, "beta": 169.273, "gamma": 42.948, "delta": 79.794, "epsilon": -103.208, "zeta": -159.392, "epsilon_zeta": 56.183, "bb_type": "BII", "chi": -159.586, "glyco_bond": "anti", "C5prime_xyz": [ -1.612, 8.810, 0.475 ], "P_xyz": [ 0.863, 9.469, 0.973 ], "form": ".", "ssZp": 3.966, "Dp": 4.606, "splay_angle": 65.704, "splay_distance": 9.815, "splay_ratio": 0.546, "d22": null, "d64": null, "eta": 176.457, "theta": 161.969, "eta_prime": -171.844, "theta_prime": 158.449, "eta_base": -132.120, "theta_base": -179.312, "v0": -2.214, "v1": -20.909, "v2": 34.828, "v3": -37.071, "v4": 24.790, "amplitude": 37.546, "phase_angle": 21.936, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.740, "filter_rmsd": 0.101, "frame": { "rmsd": 0.009, "origin": [ 183.283, 188.503, 225.541 ], "x_axis": [ 0.046, -0.998, 0.047 ], "y_axis": [ 0.813, 0.010, -0.582 ], "z_axis": [ 0.580, 0.065, 0.812 ], "quaternion": [ 0.683, -0.237, 0.195, -0.663 ] } }, { "index": 1589, "index_chain": 1589, "chain_name": "A", "nt_resnum": 1667, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1667", "linked_nts": [ "///A/1666", "///A/1668" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate", "alpha": 23.575, "beta": -129.730, "gamma": -85.835, "delta": 81.536, "epsilon": -143.171, "zeta": -41.145, "epsilon_zeta": -102.025, "bb_type": "BI", "chi": 3.131, "glyco_bond": "syn", "C5prime_xyz": [ -5.022, 3.493, -1.603 ], "P_xyz": [ -7.528, 2.993, -2.088 ], "form": ".", "ssZp": -4.716, "Dp": 4.690, "splay_angle": 29.810, "splay_distance": 5.048, "splay_ratio": 0.274, "d22": null, "d64": null, "eta": -166.984, "theta": -138.493, "eta_prime": 169.918, "theta_prime": -126.540, "eta_base": 169.098, "theta_base": -124.720, "v0": 4.913, "v1": -26.490, "v2": 36.816, "v3": -35.023, "v4": 19.008, "amplitude": 37.543, "phase_angle": 11.294, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.043, "frame": { "rmsd": 0.012, "origin": [ 188.190, 195.942, 229.655 ], "x_axis": [ -0.071, 0.696, 0.715 ], "y_axis": [ 0.639, 0.582, -0.503 ], "z_axis": [ -0.766, 0.421, -0.486 ], "quaternion": [ 0.506, -0.456, -0.731, 0.028 ] } }, { "index": 1590, "index_chain": 1590, "chain_name": "A", "nt_resnum": 1668, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1668", "linked_nts": [ "///A/1667", "///A/1669" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,junction-loop", "alpha": 160.401, "beta": -164.649, "gamma": 168.548, "delta": 81.540, "epsilon": -144.592, "zeta": -69.908, "epsilon_zeta": -74.684, "bb_type": "BI", "chi": 174.077, "glyco_bond": "anti", "C5prime_xyz": [ -1.483, 8.268, 1.996 ], "P_xyz": [ 0.371, 10.007, 1.403 ], "form": "A", "ssZp": 4.589, "Dp": 4.646, "splay_angle": 26.151, "splay_distance": 4.014, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": 155.748, "theta": -162.547, "eta_prime": -165.291, "theta_prime": -158.722, "eta_base": -146.161, "theta_base": -128.274, "v0": 2.905, "v1": -24.710, "v2": 35.958, "v3": -35.275, "v4": 20.403, "amplitude": 37.096, "phase_angle": 14.229, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.376, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 189.510, 194.986, 234.433 ], "x_axis": [ -0.319, -0.893, -0.318 ], "y_axis": [ 0.536, 0.107, -0.838 ], "z_axis": [ 0.782, -0.437, 0.444 ], "quaternion": [ 0.555, -0.180, 0.495, -0.643 ] } }, { "index": 1591, "index_chain": 1591, "chain_name": "A", "nt_resnum": 1669, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1669", "linked_nts": [ "///A/1668", "///A/1670" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -63.709, "beta": -166.452, "gamma": 38.447, "delta": 82.250, "epsilon": -161.871, "zeta": -74.914, "epsilon_zeta": -86.957, "bb_type": "BI", "chi": -167.480, "glyco_bond": "anti", "C5prime_xyz": [ -1.143, 8.540, 0.991 ], "P_xyz": [ 1.183, 8.761, 2.158 ], "form": "A", "ssZp": 4.526, "Dp": 4.572, "splay_angle": 24.609, "splay_distance": 4.192, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 166.630, "theta": -130.926, "eta_prime": 177.869, "theta_prime": -135.599, "eta_base": -140.701, "theta_base": -114.790, "v0": 5.828, "v1": -27.093, "v2": 36.999, "v3": -34.656, "v4": 18.199, "amplitude": 37.562, "phase_angle": 9.930, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.550, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 190.859, 192.727, 237.463 ], "x_axis": [ -0.010, -0.577, -0.817 ], "y_axis": [ 0.544, 0.682, -0.489 ], "z_axis": [ 0.839, -0.449, 0.307 ], "quaternion": [ 0.703, -0.014, 0.589, -0.398 ] } }, { "index": 1592, "index_chain": 1592, "chain_name": "A", "nt_resnum": 1670, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1670", "linked_nts": [ "///A/1669", "///A/1671" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop", "alpha": 160.805, "beta": -162.936, "gamma": 174.200, "delta": 81.692, "epsilon": -136.111, "zeta": -71.279, "epsilon_zeta": -64.832, "bb_type": "BI", "chi": 173.243, "glyco_bond": "anti", "C5prime_xyz": [ -1.182, 8.171, 2.069 ], "P_xyz": [ 0.754, 9.829, 1.527 ], "form": ".", "ssZp": 4.668, "Dp": 4.711, "splay_angle": 42.112, "splay_distance": 6.180, "splay_ratio": 0.360, "d22": null, "d64": null, "eta": 166.373, "theta": -115.994, "eta_prime": -179.169, "theta_prime": -115.412, "eta_base": -139.770, "theta_base": -57.686, "v0": 5.344, "v1": -26.712, "v2": 36.910, "v3": -34.792, "v4": 18.603, "amplitude": 37.555, "phase_angle": 10.639, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.900, "filter_rmsd": 0.067, "frame": { "rmsd": 0.009, "origin": [ 192.213, 188.983, 238.775 ], "x_axis": [ 0.168, -0.105, -0.980 ], "y_axis": [ 0.464, 0.886, -0.015 ], "z_axis": [ 0.870, -0.452, 0.198 ], "quaternion": [ 0.750, 0.146, 0.616, -0.190 ] } }, { "index": 1593, "index_chain": 1593, "chain_name": "A", "nt_resnum": 1671, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1671", "linked_nts": [ "///A/1670", "///A/1672" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,junction-loop,splayed-apart", "alpha": 179.130, "beta": -128.959, "gamma": 130.825, "delta": 84.346, "epsilon": -101.887, "zeta": 145.753, "epsilon_zeta": 112.360, "bb_type": "BII", "chi": -173.506, "glyco_bond": "anti", "C5prime_xyz": [ -1.530, 8.605, 1.289 ], "P_xyz": [ 0.999, 8.672, 0.625 ], "form": ".", "ssZp": 4.400, "Dp": 4.591, "splay_angle": 104.943, "splay_distance": 14.519, "splay_ratio": 0.793, "d22": null, "d64": null, "eta": 153.906, "theta": 102.574, "eta_prime": -170.738, "theta_prime": 107.612, "eta_base": -90.768, "theta_base": 133.492, "v0": -0.524, "v1": -20.465, "v2": 32.379, "v3": -33.617, "v4": 21.609, "amplitude": 34.349, "phase_angle": 19.498, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 197.192, 189.367, 235.135 ], "x_axis": [ 0.411, 0.867, -0.283 ], "y_axis": [ 0.031, 0.297, 0.954 ], "z_axis": [ 0.911, -0.401, 0.095 ], "quaternion": [ 0.671, 0.504, 0.445, 0.311 ] } }, { "index": 1594, "index_chain": 1594, "chain_name": "A", "nt_resnum": 1672, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1672", "linked_nts": [ "///A/1671", "///A/1673" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -91.111, "beta": 161.715, "gamma": 49.723, "delta": 82.651, "epsilon": -152.165, "zeta": -65.989, "epsilon_zeta": -86.177, "bb_type": "BI", "chi": -174.436, "glyco_bond": "anti", "C5prime_xyz": [ -1.167, 8.488, 1.391 ], "P_xyz": [ 1.407, 8.559, 1.904 ], "form": "A", "ssZp": 4.567, "Dp": 4.584, "splay_angle": 28.556, "splay_distance": 4.549, "splay_ratio": 0.251, "d22": null, "d64": null, "eta": -175.211, "theta": -139.421, "eta_prime": -176.285, "theta_prime": -139.216, "eta_base": 167.596, "theta_base": -122.257, "v0": 3.098, "v1": -24.165, "v2": 34.856, "v3": -34.020, "v4": 19.567, "amplitude": 35.890, "phase_angle": 13.787, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.086, "filter_rmsd": 0.046, "frame": { "rmsd": 0.017, "origin": [ 195.819, 179.300, 245.506 ], "x_axis": [ -0.056, -0.011, -0.998 ], "y_axis": [ 0.290, 0.957, -0.027 ], "z_axis": [ 0.955, -0.291, -0.050 ], "quaternion": [ 0.680, 0.097, 0.718, -0.111 ] } }, { "index": 1595, "index_chain": 1595, "chain_name": "A", "nt_resnum": 1673, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1673", "linked_nts": [ "///A/1672", "///A/1674" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -69.195, "beta": -169.323, "gamma": 48.344, "delta": 82.817, "epsilon": -153.150, "zeta": -72.456, "epsilon_zeta": -80.695, "bb_type": "BI", "chi": -171.768, "glyco_bond": "anti", "C5prime_xyz": [ -1.562, 8.696, 1.198 ], "P_xyz": [ 0.667, 9.140, 2.503 ], "form": "A", "ssZp": 4.412, "Dp": 4.458, "splay_angle": 23.947, "splay_distance": 3.871, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 171.838, "theta": -149.302, "eta_prime": -176.552, "theta_prime": -145.848, "eta_base": -146.003, "theta_base": -122.686, "v0": -2.129, "v1": -19.383, "v2": 32.245, "v3": -34.386, "v4": 23.051, "amplitude": 34.788, "phase_angle": 22.044, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.834, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 198.874, 175.948, 245.148 ], "x_axis": [ -0.182, 0.510, -0.841 ], "y_axis": [ 0.113, 0.860, 0.497 ], "z_axis": [ 0.977, -0.005, -0.214 ], "quaternion": [ 0.605, 0.207, 0.751, 0.164 ] } }, { "index": 1596, "index_chain": 1596, "chain_name": "A", "nt_resnum": 1674, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1674", "linked_nts": [ "///A/1673", "///A/1675" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -64.874, "beta": -178.857, "gamma": 46.537, "delta": 82.306, "epsilon": -123.781, "zeta": -91.832, "epsilon_zeta": -31.949, "bb_type": "--", "chi": -166.696, "glyco_bond": "anti", "C5prime_xyz": [ -1.522, 8.761, 0.915 ], "P_xyz": [ 0.838, 9.295, 1.910 ], "form": "A", "ssZp": 4.345, "Dp": 4.578, "splay_angle": 20.624, "splay_distance": 3.330, "splay_ratio": 0.179, "d22": null, "d64": null, "eta": 174.145, "theta": -145.164, "eta_prime": -177.928, "theta_prime": -141.602, "eta_base": -148.541, "theta_base": -115.944, "v0": -1.496, "v1": -20.387, "v2": 33.237, "v3": -35.044, "v4": 23.051, "amplitude": 35.594, "phase_angle": 20.969, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.889, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 201.905, 174.200, 243.493 ], "x_axis": [ -0.268, 0.860, -0.434 ], "y_axis": [ 0.122, 0.478, 0.870 ], "z_axis": [ 0.956, 0.180, -0.233 ], "quaternion": [ 0.494, 0.349, 0.703, 0.373 ] } }, { "index": 1597, "index_chain": 1597, "chain_name": "A", "nt_resnum": 1675, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1675", "linked_nts": [ "///A/1674", "///A/1676" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor", "alpha": -63.737, "beta": 152.556, "gamma": 53.591, "delta": 79.677, "epsilon": -116.767, "zeta": -70.878, "epsilon_zeta": -45.889, "bb_type": "--", "chi": -164.723, "glyco_bond": "anti", "C5prime_xyz": [ -1.674, 8.741, 0.765 ], "P_xyz": [ 0.895, 9.217, 0.688 ], "form": ".", "ssZp": 4.352, "Dp": 4.680, "splay_angle": 41.196, "splay_distance": 6.421, "splay_ratio": 0.352, "d22": null, "d64": null, "eta": 161.320, "theta": -117.559, "eta_prime": 172.101, "theta_prime": -113.404, "eta_base": -154.101, "theta_base": -67.774, "v0": -1.119, "v1": -22.034, "v2": 35.497, "v3": -37.146, "v4": 24.106, "amplitude": 37.840, "phase_angle": 20.265, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.459, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 204.740, 174.652, 241.806 ], "x_axis": [ -0.430, 0.891, 0.144 ], "y_axis": [ 0.317, -0.000, 0.948 ], "z_axis": [ 0.845, 0.454, -0.283 ], "quaternion": [ 0.268, 0.462, 0.654, 0.536 ] } }, { "index": 1598, "index_chain": 1598, "chain_name": "A", "nt_resnum": 1676, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1676", "linked_nts": [ "///A/1675", "///A/1677" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor,splayed-apart", "alpha": -69.655, "beta": 154.647, "gamma": 73.124, "delta": 80.648, "epsilon": -125.590, "zeta": -67.227, "epsilon_zeta": -58.364, "bb_type": "--", "chi": -161.486, "glyco_bond": "anti", "C5prime_xyz": [ -1.152, 8.664, 0.584 ], "P_xyz": [ 1.277, 8.896, -0.378 ], "form": ".", "ssZp": 4.419, "Dp": 4.816, "splay_angle": 98.420, "splay_distance": 12.862, "splay_ratio": 0.758, "d22": null, "d64": null, "eta": 163.567, "theta": -107.134, "eta_prime": -168.672, "theta_prime": -155.842, "eta_base": -101.775, "theta_base": 142.454, "v0": 5.591, "v1": -27.964, "v2": 38.472, "v3": -36.236, "v4": 19.363, "amplitude": 39.133, "phase_angle": 10.546, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.213, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 206.716, 180.390, 243.904 ], "x_axis": [ 0.026, 0.340, 0.940 ], "y_axis": [ 0.632, -0.734, 0.248 ], "z_axis": [ 0.775, 0.588, -0.233 ], "quaternion": [ -0.120, 0.706, 0.344, 0.607 ] } }, { "index": 1599, "index_chain": 1599, "chain_name": "A", "nt_resnum": 1677, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1677", "linked_nts": [ "///A/1676", "///A/1678" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,A-minor,splayed-apart", "alpha": -176.156, "beta": 157.286, "gamma": 35.018, "delta": 91.607, "epsilon": -154.132, "zeta": -68.668, "epsilon_zeta": -85.464, "bb_type": "BI", "chi": -106.529, "glyco_bond": "anti", "C5prime_xyz": [ -1.354, 7.726, -2.308 ], "P_xyz": [ 1.218, 7.412, -2.783 ], "form": ".", "ssZp": 1.742, "Dp": 4.504, "splay_angle": 24.942, "splay_distance": 4.234, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 18.598, "theta": -133.906, "eta_prime": 48.938, "theta_prime": -134.866, "eta_base": 23.833, "theta_base": -103.134, "v0": 9.622, "v1": -25.369, "v2": 30.671, "v3": -25.950, "v4": 10.418, "amplitude": 30.675, "phase_angle": 0.836, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.421, "filter_rmsd": 0.040, "frame": { "rmsd": 0.012, "origin": [ 215.070, 176.896, 234.771 ], "x_axis": [ -0.303, -0.944, 0.128 ], "y_axis": [ -0.320, 0.227, 0.920 ], "z_axis": [ -0.898, 0.238, -0.371 ], "quaternion": [ -0.372, -0.459, 0.689, 0.420 ] } }, { "index": 1600, "index_chain": 1600, "chain_name": "A", "nt_resnum": 1678, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1678", "linked_nts": [ "///A/1677", "///A/1679" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart", "alpha": -71.493, "beta": 160.655, "gamma": 71.984, "delta": 83.384, "epsilon": -136.421, "zeta": -104.605, "epsilon_zeta": -31.815, "bb_type": "--", "chi": -111.909, "glyco_bond": "anti", "C5prime_xyz": [ -1.812, 8.179, -2.160 ], "P_xyz": [ 0.072, 7.643, -3.899 ], "form": ".", "ssZp": 1.716, "Dp": 4.656, "splay_angle": 110.020, "splay_distance": 16.131, "splay_ratio": 0.819, "d22": null, "d64": null, "eta": 173.212, "theta": -142.727, "eta_prime": -166.970, "theta_prime": 177.643, "eta_base": -127.005, "theta_base": 135.156, "v0": 0.952, "v1": -22.616, "v2": 34.332, "v3": -34.737, "v4": 21.355, "amplitude": 35.922, "phase_angle": 17.109, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.362, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 211.105, 175.978, 235.938 ], "x_axis": [ -0.378, -0.741, 0.555 ], "y_axis": [ -0.436, 0.671, 0.600 ], "z_axis": [ -0.817, -0.015, -0.577 ], "quaternion": [ -0.423, -0.363, 0.810, 0.180 ] } }, { "index": 1601, "index_chain": 1601, "chain_name": "A", "nt_resnum": 1679, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1679", "linked_nts": [ "///A/1678", "///A/1680" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart", "alpha": 175.122, "beta": 177.634, "gamma": 42.748, "delta": 144.016, "epsilon": -94.998, "zeta": -73.433, "epsilon_zeta": -21.566, "bb_type": "--", "chi": -151.345, "glyco_bond": "anti", "C5prime_xyz": [ -1.911, 8.737, 0.422 ], "P_xyz": [ -0.115, 9.432, 2.198 ], "form": ".", "ssZp": 0.790, "Dp": 0.840, "splay_angle": 128.582, "splay_distance": 16.984, "splay_ratio": 0.901, "d22": null, "d64": null, "eta": 54.032, "theta": -55.048, "eta_prime": 75.545, "theta_prime": -72.061, "eta_base": 66.031, "theta_base": -45.039, "v0": -23.067, "v1": 36.195, "v2": -34.738, "v3": 22.302, "v4": 0.265, "amplitude": 36.783, "phase_angle": 160.803, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1z", "suiteness": 0.392, "filter_rmsd": 0.042, "frame": { "rmsd": 0.012, "origin": [ 203.386, 189.947, 233.591 ], "x_axis": [ 0.450, 0.717, 0.532 ], "y_axis": [ 0.058, -0.618, 0.784 ], "z_axis": [ 0.891, -0.322, -0.319 ], "quaternion": [ 0.358, 0.773, 0.251, 0.461 ] } }, { "index": 1602, "index_chain": 1602, "chain_name": "A", "nt_resnum": 1680, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1680", "linked_nts": [ "///A/1679", "///A/1681" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart", "alpha": -71.399, "beta": -151.122, "gamma": 51.063, "delta": 83.667, "epsilon": -132.937, "zeta": -68.258, "epsilon_zeta": -64.678, "bb_type": "BI", "chi": 177.696, "glyco_bond": "anti", "C5prime_xyz": [ -1.482, 8.289, 1.804 ], "P_xyz": [ 0.519, 8.147, 3.471 ], "form": "A", "ssZp": 4.645, "Dp": 4.665, "splay_angle": 25.403, "splay_distance": 3.977, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 172.328, "theta": -126.728, "eta_prime": -151.865, "theta_prime": -119.309, "eta_base": -134.412, "theta_base": -69.604, "v0": 2.293, "v1": -23.361, "v2": 34.366, "v3": -34.035, "v4": 20.065, "amplitude": 35.587, "phase_angle": 15.053, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.869, "filter_rmsd": 0.043, "frame": { "rmsd": 0.012, "origin": [ 207.631, 174.269, 238.552 ], "x_axis": [ 0.118, 0.529, 0.840 ], "y_axis": [ -0.331, 0.819, -0.469 ], "z_axis": [ -0.936, -0.223, 0.272 ], "quaternion": [ 0.743, -0.083, -0.598, 0.289 ] } }, { "index": 1603, "index_chain": 1603, "chain_name": "A", "nt_resnum": 1681, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1681", "linked_nts": [ "///A/1680", "///A/1682" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor", "alpha": -60.083, "beta": 169.217, "gamma": 52.595, "delta": 84.925, "epsilon": -132.328, "zeta": -83.620, "epsilon_zeta": -48.708, "bb_type": "BI", "chi": -161.851, "glyco_bond": "anti", "C5prime_xyz": [ -1.346, 8.748, 0.630 ], "P_xyz": [ 1.219, 9.111, 1.063 ], "form": "A", "ssZp": 4.257, "Dp": 4.535, "splay_angle": 22.166, "splay_distance": 3.577, "splay_ratio": 0.192, "d22": 4.422, "d64": 3.704, "eta": 169.087, "theta": -139.675, "eta_prime": -169.594, "theta_prime": -138.396, "eta_base": -105.375, "theta_base": -112.888, "v0": -1.252, "v1": -19.225, "v2": 31.118, "v3": -32.691, "v4": 21.467, "amplitude": 33.265, "phase_angle": 20.698, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.831, "filter_rmsd": 0.103, "frame": { "rmsd": 0.008, "origin": [ 205.207, 174.556, 241.692 ], "x_axis": [ -0.177, 0.971, 0.163 ], "y_axis": [ -0.355, 0.091, -0.931 ], "z_axis": [ -0.918, -0.223, 0.328 ], "quaternion": [ 0.557, -0.318, -0.485, 0.595 ] } }, { "index": 1604, "index_chain": 1604, "chain_name": "A", "nt_resnum": 1682, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1682", "linked_nts": [ "///A/1681", "///A/1683" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -68.808, "beta": 171.089, "gamma": 45.845, "delta": 83.485, "epsilon": -155.534, "zeta": -71.486, "epsilon_zeta": -84.047, "bb_type": "BI", "chi": -154.107, "glyco_bond": "anti", "C5prime_xyz": [ -1.215, 8.759, 0.181 ], "P_xyz": [ 1.374, 9.093, 0.400 ], "form": "A", "ssZp": 4.230, "Dp": 4.539, "splay_angle": 24.369, "splay_distance": 3.924, "splay_ratio": 0.212, "d22": 4.562, "d64": 4.649, "eta": 154.937, "theta": -146.971, "eta_prime": 168.963, "theta_prime": -146.707, "eta_base": -152.032, "theta_base": -125.976, "v0": 1.927, "v1": -23.027, "v2": 34.159, "v3": -33.987, "v4": 20.240, "amplitude": 35.458, "phase_angle": 15.560, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.729, "filter_rmsd": 0.064, "frame": { "rmsd": 0.007, "origin": [ 202.111, 174.413, 243.478 ], "x_axis": [ 0.015, 0.857, -0.515 ], "y_axis": [ -0.288, -0.490, -0.823 ], "z_axis": [ -0.958, 0.161, 0.239 ], "quaternion": [ 0.437, -0.562, -0.253, 0.655 ] } }, { "index": 1605, "index_chain": 1605, "chain_name": "A", "nt_resnum": 1683, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1683", "linked_nts": [ "///A/1682", "///A/1684" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -64.787, "beta": 173.387, "gamma": 55.703, "delta": 78.284, "epsilon": -161.351, "zeta": -68.202, "epsilon_zeta": -93.148, "bb_type": "BI", "chi": -154.531, "glyco_bond": "anti", "C5prime_xyz": [ -1.311, 8.849, 0.170 ], "P_xyz": [ 1.254, 9.339, 0.028 ], "form": ".", "ssZp": 4.303, "Dp": 4.560, "splay_angle": 18.377, "splay_distance": 3.378, "splay_ratio": 0.175, "d22": 4.244, "d64": 4.731, "eta": 168.454, "theta": -126.154, "eta_prime": -177.638, "theta_prime": -137.715, "eta_base": -142.743, "theta_base": -124.682, "v0": 0.429, "v1": -23.933, "v2": 37.061, "v3": -37.758, "v4": 23.562, "amplitude": 38.957, "phase_angle": 17.953, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.942, "filter_rmsd": 0.065, "frame": { "rmsd": 0.006, "origin": [ 198.936, 176.090, 245.061 ], "x_axis": [ -0.074, 0.512, -0.856 ], "y_axis": [ -0.320, -0.825, -0.466 ], "z_axis": [ -0.945, 0.239, 0.225 ], "quaternion": [ 0.285, -0.618, -0.078, 0.729 ] } }, { "index": 1606, "index_chain": 1606, "chain_name": "A", "nt_resnum": 1684, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1684", "linked_nts": [ "///A/1683", "///A/1685" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 158.817, "beta": -169.663, "gamma": 172.932, "delta": 81.143, "epsilon": -154.748, "zeta": -66.880, "epsilon_zeta": -87.868, "bb_type": "BI", "chi": -164.362, "glyco_bond": "anti", "C5prime_xyz": [ -1.300, 8.640, 0.771 ], "P_xyz": [ -0.077, 10.316, -0.846 ], "form": ".", "ssZp": 4.545, "Dp": 4.625, "splay_angle": 40.628, "splay_distance": 6.314, "splay_ratio": 0.350, "d22": null, "d64": null, "eta": 160.039, "theta": -172.864, "eta_prime": 176.699, "theta_prime": -167.975, "eta_base": -149.105, "theta_base": -146.084, "v0": 3.716, "v1": -26.182, "v2": 37.429, "v3": -36.246, "v4": 20.550, "amplitude": 38.436, "phase_angle": 13.143, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.903, "filter_rmsd": 0.097, "frame": { "rmsd": 0.011, "origin": [ 197.221, 178.971, 245.475 ], "x_axis": [ -0.088, 0.134, -0.987 ], "y_axis": [ -0.511, -0.857, -0.071 ], "z_axis": [ -0.855, 0.498, 0.144 ], "quaternion": [ 0.223, -0.637, 0.148, 0.723 ] } }, { "index": 1607, "index_chain": 1607, "chain_name": "A", "nt_resnum": 1685, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1685", "linked_nts": [ "///A/1684", "///A/1686" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate", "alpha": -69.821, "beta": -160.851, "gamma": 52.934, "delta": 80.661, "epsilon": -148.965, "zeta": -65.791, "epsilon_zeta": -83.173, "bb_type": "BI", "chi": 179.170, "glyco_bond": "anti", "C5prime_xyz": [ -1.798, 8.488, 1.662 ], "P_xyz": [ 0.298, 8.887, 3.188 ], "form": "A", "ssZp": 4.539, "Dp": 4.542, "splay_angle": 25.591, "splay_distance": 3.889, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": -178.328, "theta": -141.652, "eta_prime": -171.979, "theta_prime": -135.760, "eta_base": -146.483, "theta_base": -87.045, "v0": -2.472, "v1": -19.809, "v2": 33.200, "v3": -35.556, "v4": 24.011, "amplitude": 35.924, "phase_angle": 22.456, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.703, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 193.010, 183.670, 245.714 ], "x_axis": [ 0.184, -0.383, -0.905 ], "y_axis": [ 0.024, -0.919, 0.393 ], "z_axis": [ -0.983, -0.093, -0.160 ], "quaternion": [ 0.162, 0.752, -0.119, -0.628 ] } }, { "index": 1608, "index_chain": 1608, "chain_name": "A", "nt_resnum": 1686, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1686", "linked_nts": [ "///A/1685", "///A/1687" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -72.891, "beta": -176.602, "gamma": 49.766, "delta": 85.097, "epsilon": -122.684, "zeta": -64.382, "epsilon_zeta": -58.302, "bb_type": "--", "chi": -170.067, "glyco_bond": "anti", "C5prime_xyz": [ -1.192, 8.491, 1.163 ], "P_xyz": [ 1.263, 8.593, 2.074 ], "form": ".", "ssZp": 4.515, "Dp": 4.687, "splay_angle": 36.549, "splay_distance": 5.719, "splay_ratio": 0.314, "d22": null, "d64": null, "eta": 170.226, "theta": -112.706, "eta_prime": -176.166, "theta_prime": -104.833, "eta_base": -117.893, "theta_base": -57.483, "v0": 3.980, "v1": -24.126, "v2": 33.965, "v3": -32.649, "v4": 18.117, "amplitude": 34.754, "phase_angle": 12.231, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.879, "filter_rmsd": 0.040, "frame": { "rmsd": 0.011, "origin": [ 189.943, 183.367, 243.341 ], "x_axis": [ 0.250, -0.930, -0.268 ], "y_axis": [ -0.035, -0.285, 0.958 ], "z_axis": [ -0.967, -0.230, -0.104 ], "quaternion": [ 0.464, 0.640, -0.377, -0.482 ] } }, { "index": 1609, "index_chain": 1609, "chain_name": "A", "nt_resnum": 1687, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1687", "linked_nts": [ "///A/1686", "///A/1688" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -56.015, "beta": 159.457, "gamma": 55.767, "delta": 80.067, "epsilon": -151.208, "zeta": -72.676, "epsilon_zeta": -78.531, "bb_type": "BI", "chi": -161.071, "glyco_bond": "anti", "C5prime_xyz": [ -1.448, 8.756, 0.573 ], "P_xyz": [ 1.137, 9.122, 0.381 ], "form": "A", "ssZp": 4.441, "Dp": 4.625, "splay_angle": 21.205, "splay_distance": 3.439, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": 158.779, "theta": -145.099, "eta_prime": -168.273, "theta_prime": -146.526, "eta_base": -96.046, "theta_base": -125.584, "v0": 1.984, "v1": -24.756, "v2": 36.871, "v3": -36.731, "v4": 21.897, "amplitude": 38.299, "phase_angle": 15.696, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.576, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 187.540, 178.178, 243.419 ], "x_axis": [ 0.140, -0.700, 0.700 ], "y_axis": [ -0.305, 0.642, 0.703 ], "z_axis": [ -0.942, -0.313, -0.124 ], "quaternion": [ 0.644, 0.394, -0.637, -0.153 ] } }, { "index": 1610, "index_chain": 1610, "chain_name": "A", "nt_resnum": 1688, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1688", "linked_nts": [ "///A/1687", "///A/1689" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.355, "beta": 168.088, "gamma": 60.855, "delta": 79.974, "epsilon": -147.759, "zeta": -70.790, "epsilon_zeta": -76.969, "bb_type": "BI", "chi": -154.927, "glyco_bond": "anti", "C5prime_xyz": [ -1.609, 8.847, 0.196 ], "P_xyz": [ 0.912, 9.463, -0.064 ], "form": "A", "ssZp": 4.238, "Dp": 4.589, "splay_angle": 24.600, "splay_distance": 3.988, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 172.937, "theta": -145.152, "eta_prime": -173.050, "theta_prime": -145.461, "eta_base": -137.109, "theta_base": -118.586, "v0": -0.670, "v1": -22.439, "v2": 35.666, "v3": -37.065, "v4": 23.799, "amplitude": 37.860, "phase_angle": 19.604, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.888, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 185.353, 175.650, 242.612 ], "x_axis": [ -0.033, -0.308, 0.951 ], "y_axis": [ -0.485, 0.837, 0.255 ], "z_axis": [ -0.874, -0.452, -0.177 ], "quaternion": [ 0.638, 0.277, -0.715, 0.069 ] } }, { "index": 1611, "index_chain": 1611, "chain_name": "A", "nt_resnum": 1689, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1689", "linked_nts": [ "///A/1688", "///A/1690" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -79.682, "beta": 159.089, "gamma": 83.243, "delta": 79.390, "epsilon": -142.551, "zeta": -80.007, "epsilon_zeta": -62.544, "bb_type": "BI", "chi": -157.126, "glyco_bond": "anti", "C5prime_xyz": [ -1.598, 8.788, 0.318 ], "P_xyz": [ 0.691, 9.439, -0.771 ], "form": ".", "ssZp": 4.325, "Dp": 4.658, "splay_angle": 32.949, "splay_distance": 5.241, "splay_ratio": 0.284, "d22": null, "d64": null, "eta": 171.351, "theta": -149.404, "eta_prime": -171.458, "theta_prime": -148.671, "eta_base": -129.617, "theta_base": -124.318, "v0": -0.163, "v1": -23.016, "v2": 36.092, "v3": -37.162, "v4": 23.522, "amplitude": 38.128, "phase_angle": 18.807, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.045, "filter_rmsd": 0.098, "frame": { "rmsd": 0.010, "origin": [ 182.555, 172.860, 243.148 ], "x_axis": [ -0.337, 0.126, 0.933 ], "y_axis": [ -0.518, 0.803, -0.295 ], "z_axis": [ -0.787, -0.582, -0.205 ], "quaternion": [ 0.562, 0.128, -0.766, 0.287 ] } }, { "index": 1612, "index_chain": 1612, "chain_name": "A", "nt_resnum": 1690, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1690", "linked_nts": [ "///A/1689", "///A/1691" ], "nt_type": "RNA", "dbn": ")", "summary": "turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor", "alpha": -61.113, "beta": 163.766, "gamma": 73.054, "delta": 83.999, "epsilon": -94.454, "zeta": 118.211, "epsilon_zeta": 147.335, "bb_type": "--", "chi": -154.350, "glyco_bond": "anti", "C5prime_xyz": [ -1.554, 8.845, 0.148 ], "P_xyz": [ 0.931, 9.334, -0.534 ], "form": ".", "ssZp": 3.630, "Dp": 4.523, "splay_angle": 79.512, "splay_distance": 11.307, "splay_ratio": 0.648, "d22": null, "d64": null, "eta": -162.135, "theta": 80.626, "eta_prime": -152.528, "theta_prime": 76.661, "eta_base": -123.255, "theta_base": 72.487, "v0": -2.032, "v1": -19.858, "v2": 32.851, "v3": -34.892, "v4": 23.321, "amplitude": 35.375, "phase_angle": 21.775, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.394, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 178.484, 169.713, 244.147 ], "x_axis": [ -0.574, 0.556, 0.601 ], "y_axis": [ -0.238, 0.589, -0.772 ], "z_axis": [ -0.783, -0.586, -0.206 ], "quaternion": [ -0.450, 0.103, 0.769, -0.441 ] } }, { "index": 1613, "index_chain": 1613, "chain_name": "A", "nt_resnum": 1691, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1691", "linked_nts": [ "///A/1690", "///A/1692" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": -170.567, "beta": -174.217, "gamma": 54.326, "delta": 141.137, "epsilon": -155.178, "zeta": 76.901, "epsilon_zeta": 127.921, "bb_type": "--", "chi": 109.635, "glyco_bond": "--", "C5prime_xyz": [ -4.202, 6.041, 2.928 ], "P_xyz": [ -4.754, 3.927, 4.364 ], "form": ".", "ssZp": -1.547, "Dp": 2.024, "splay_angle": 106.081, "splay_distance": 16.143, "splay_ratio": 0.800, "d22": null, "d64": null, "eta": 121.050, "theta": 87.992, "eta_prime": 142.649, "theta_prime": 70.483, "eta_base": 160.264, "theta_base": 44.186, "v0": -26.247, "v1": 37.755, "v2": -34.148, "v3": 19.914, "v4": 3.786, "amplitude": 37.524, "phase_angle": 155.509, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.046, "frame": { "rmsd": 0.015, "origin": [ 182.349, 173.160, 234.095 ], "x_axis": [ 0.443, 0.884, 0.149 ], "y_axis": [ -0.722, 0.450, -0.526 ], "z_axis": [ -0.532, 0.126, 0.838 ], "quaternion": [ 0.826, -0.197, -0.206, 0.486 ] } }, { "index": 1614, "index_chain": 1614, "chain_name": "A", "nt_resnum": 1692, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1692", "linked_nts": [ "///A/1691", "///A/1693" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": 19.433, "beta": 123.344, "gamma": -63.974, "delta": 149.852, "epsilon": -113.585, "zeta": 131.885, "epsilon_zeta": 114.530, "bb_type": "BII", "chi": -118.650, "glyco_bond": "anti", "C5prime_xyz": [ -1.698, 8.383, -1.225 ], "P_xyz": [ -1.183, 10.675, -0.049 ], "form": ".", "ssZp": 1.144, "Dp": 1.284, "splay_angle": 110.536, "splay_distance": 17.575, "splay_ratio": 0.822, "d22": 12.743, "d64": 16.240, "eta": 154.320, "theta": 119.354, "eta_prime": 157.495, "theta_prime": 112.959, "eta_base": 173.938, "theta_base": 116.485, "v0": -17.605, "v1": 33.066, "v2": -35.038, "v3": 25.784, "v4": -5.350, "amplitude": 35.608, "phase_angle": 169.731, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.006, "origin": [ 166.711, 176.118, 231.393 ], "x_axis": [ 0.470, 0.574, 0.670 ], "y_axis": [ 0.867, -0.444, -0.227 ], "z_axis": [ 0.167, 0.688, -0.706 ], "quaternion": [ -0.283, 0.809, 0.445, 0.259 ] } }, { "index": 1615, "index_chain": 1615, "chain_name": "A", "nt_resnum": 1693, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1693", "linked_nts": [ "///A/1692", "///A/1694" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart", "alpha": -76.055, "beta": 126.562, "gamma": 178.240, "delta": 78.066, "epsilon": -153.064, "zeta": -62.934, "epsilon_zeta": -90.130, "bb_type": "BI", "chi": -160.192, "glyco_bond": "anti", "C5prime_xyz": [ -1.389, 8.811, 0.498 ], "P_xyz": [ -1.685, 11.049, -0.834 ], "form": ".", "ssZp": 4.458, "Dp": 4.637, "splay_angle": 19.950, "splay_distance": 3.880, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": -46.242, "theta": -170.019, "eta_prime": -70.910, "theta_prime": -167.544, "eta_base": -72.613, "theta_base": -142.870, "v0": 0.810, "v1": -24.564, "v2": 37.711, "v3": -38.228, "v4": 23.608, "amplitude": 39.529, "phase_angle": 17.441, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.009, "origin": [ 166.601, 159.848, 224.748 ], "x_axis": [ 0.600, -0.448, -0.663 ], "y_axis": [ 0.575, 0.817, -0.032 ], "z_axis": [ 0.556, -0.362, 0.748 ], "quaternion": [ 0.890, 0.093, 0.343, -0.288 ] } }, { "index": 1616, "index_chain": 1616, "chain_name": "A", "nt_resnum": 1694, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1694", "linked_nts": [ "///A/1693", "///A/1695" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 154.847, "beta": -178.326, "gamma": 178.482, "delta": 80.669, "epsilon": -166.928, "zeta": -88.684, "epsilon_zeta": -78.244, "bb_type": "BI", "chi": -169.480, "glyco_bond": "anti", "C5prime_xyz": [ -1.534, 8.693, 1.089 ], "P_xyz": [ -0.399, 10.734, -0.088 ], "form": "A", "ssZp": 4.441, "Dp": 4.449, "splay_angle": 22.720, "splay_distance": 3.600, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 158.229, "theta": -172.787, "eta_prime": 175.241, "theta_prime": -171.154, "eta_base": -147.337, "theta_base": -138.943, "v0": 0.536, "v1": -23.042, "v2": 35.547, "v3": -36.210, "v4": 22.490, "amplitude": 37.334, "phase_angle": 17.798, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.864, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 167.819, 156.195, 225.219 ], "x_axis": [ 0.548, 0.117, -0.828 ], "y_axis": [ 0.387, 0.843, 0.375 ], "z_axis": [ 0.741, -0.526, 0.417 ], "quaternion": [ 0.838, 0.269, 0.468, -0.081 ] } }, { "index": 1617, "index_chain": 1617, "chain_name": "A", "nt_resnum": 1695, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1695", "linked_nts": [ "///A/1694", "///A/1696" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 167.844, "beta": -143.912, "gamma": 155.056, "delta": 82.310, "epsilon": -123.298, "zeta": -100.052, "epsilon_zeta": -23.246, "bb_type": "--", "chi": 170.390, "glyco_bond": "anti", "C5prime_xyz": [ -1.606, 8.100, 2.151 ], "P_xyz": [ 0.682, 9.177, 1.490 ], "form": ".", "ssZp": 4.680, "Dp": 4.729, "splay_angle": 19.246, "splay_distance": 3.510, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 161.811, "theta": -129.680, "eta_prime": 177.136, "theta_prime": -127.341, "eta_base": -137.073, "theta_base": -114.350, "v0": 3.201, "v1": -24.980, "v2": 36.109, "v3": -35.200, "v4": 20.227, "amplitude": 37.179, "phase_angle": 13.776, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.143, "filter_rmsd": 0.044, "frame": { "rmsd": 0.012, "origin": [ 169.826, 153.206, 225.276 ], "x_axis": [ 0.637, 0.577, -0.511 ], "y_axis": [ 0.020, 0.650, 0.759 ], "z_axis": [ 0.771, -0.493, 0.403 ], "quaternion": [ 0.820, 0.382, 0.391, 0.170 ] } }, { "index": 1618, "index_chain": 1618, "chain_name": "A", "nt_resnum": 1696, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1696", "linked_nts": [ "///A/1695", "///A/1697" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": 35.912, "beta": 150.642, "gamma": -13.312, "delta": 148.650, "epsilon": -173.814, "zeta": -106.021, "epsilon_zeta": -67.793, "bb_type": "BI", "chi": -98.158, "glyco_bond": "anti", "C5prime_xyz": [ -2.228, 8.081, -2.156 ], "P_xyz": [ -0.345, 9.910, -1.890 ], "form": ".", "ssZp": 2.245, "Dp": 2.203, "splay_angle": 26.396, "splay_distance": 4.334, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 168.462, "theta": -144.798, "eta_prime": -159.389, "theta_prime": -158.432, "eta_base": -132.479, "theta_base": -93.092, "v0": -22.658, "v1": 37.581, "v2": -37.243, "v3": 24.985, "v4": -1.649, "amplitude": 38.810, "phase_angle": 163.660, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.017, "frame": { "rmsd": 0.017, "origin": [ 172.476, 151.634, 223.594 ], "x_axis": [ 0.466, 0.884, -0.046 ], "y_axis": [ 0.046, 0.027, 0.999 ], "z_axis": [ 0.884, -0.467, -0.028 ], "quaternion": [ 0.605, 0.606, 0.384, 0.346 ] } }, { "index": 1619, "index_chain": 1619, "chain_name": "A", "nt_resnum": 1697, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1697", "linked_nts": [ "///A/1696", "///A/1698" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": -77.373, "beta": 157.959, "gamma": 66.388, "delta": 75.472, "epsilon": -134.562, "zeta": -63.114, "epsilon_zeta": -71.448, "bb_type": "BI", "chi": -137.561, "glyco_bond": "anti", "C5prime_xyz": [ -1.757, 8.742, -0.895 ], "P_xyz": [ 0.387, 9.170, -2.307 ], "form": ".", "ssZp": 3.288, "Dp": 4.713, "splay_angle": 32.134, "splay_distance": 5.143, "splay_ratio": 0.278, "d22": null, "d64": null, "eta": 164.306, "theta": -129.778, "eta_prime": 172.569, "theta_prime": -119.995, "eta_base": -110.742, "theta_base": -73.411, "v0": -2.215, "v1": -22.843, "v2": 37.796, "v3": -40.142, "v4": 26.687, "amplitude": 40.668, "phase_angle": 21.662, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.015, "origin": [ 176.622, 151.786, 224.844 ], "x_axis": [ 0.548, 0.438, 0.712 ], "y_axis": [ -0.261, -0.720, 0.644 ], "z_axis": [ 0.795, -0.538, -0.280 ], "quaternion": [ 0.370, 0.798, 0.056, 0.472 ] } }, { "index": 1620, "index_chain": 1620, "chain_name": "A", "nt_resnum": 1698, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1698", "linked_nts": [ "///A/1697", "///A/1699" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BII,non-pair-contact,internal-loop,cap-acceptor,phosphate,splayed-apart", "alpha": -65.568, "beta": 165.234, "gamma": 81.588, "delta": 147.512, "epsilon": -124.104, "zeta": 142.049, "epsilon_zeta": 93.848, "bb_type": "BII", "chi": -119.952, "glyco_bond": "anti", "C5prime_xyz": [ -1.862, 8.580, -1.188 ], "P_xyz": [ 0.728, 8.886, -1.414 ], "form": ".", "ssZp": 1.383, "Dp": 1.403, "splay_angle": 92.775, "splay_distance": 15.339, "splay_ratio": 0.725, "d22": null, "d64": null, "eta": -172.054, "theta": 121.274, "eta_prime": -126.757, "theta_prime": 87.139, "eta_base": -77.710, "theta_base": 99.179, "v0": -21.300, "v1": 35.983, "v2": -36.090, "v3": 24.703, "v4": -2.324, "amplitude": 37.405, "phase_angle": 164.762, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.208, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 179.151, 151.523, 229.315 ], "x_axis": [ -0.467, -0.004, 0.884 ], "y_axis": [ -0.163, -0.983, -0.090 ], "z_axis": [ 0.869, -0.186, 0.458 ], "quaternion": [ 0.047, 0.514, -0.081, 0.853 ] } }, { "index": 1621, "index_chain": 1621, "chain_name": "A", "nt_resnum": 1699, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1699", "linked_nts": [ "///A/1698", "///A/1700" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,splayed-apart", "alpha": -54.711, "beta": -140.985, "gamma": -68.375, "delta": 82.511, "epsilon": -157.630, "zeta": -67.671, "epsilon_zeta": -89.958, "bb_type": "BI", "chi": -174.977, "glyco_bond": "anti", "C5prime_xyz": [ -1.153, 8.396, 1.365 ], "P_xyz": [ -0.991, 10.782, 2.450 ], "form": ".", "ssZp": 4.674, "Dp": 4.645, "splay_angle": 29.101, "splay_distance": 4.456, "splay_ratio": 0.256, "d22": null, "d64": null, "eta": 140.773, "theta": 162.043, "eta_prime": 119.534, "theta_prime": -179.821, "eta_base": 119.855, "theta_base": -147.115, "v0": 5.937, "v1": -27.406, "v2": 37.281, "v3": -34.779, "v4": 18.216, "amplitude": 37.824, "phase_angle": 9.720, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "0k", "suiteness": 0.202, "filter_rmsd": 0.042, "frame": { "rmsd": 0.012, "origin": [ 176.623, 146.916, 214.904 ], "x_axis": [ -0.438, 0.783, 0.442 ], "y_axis": [ 0.239, -0.373, 0.897 ], "z_axis": [ 0.867, 0.498, -0.023 ], "quaternion": [ 0.203, 0.490, 0.522, 0.669 ] } }, { "index": 1622, "index_chain": 1622, "chain_name": "A", "nt_resnum": 1700, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1700", "linked_nts": [ "///A/1699", "///A/1701" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -73.784, "beta": 174.650, "gamma": 72.372, "delta": 82.334, "epsilon": -136.682, "zeta": -47.943, "epsilon_zeta": -88.740, "bb_type": "BI", "chi": -179.377, "glyco_bond": "anti", "C5prime_xyz": [ -1.599, 8.418, 1.610 ], "P_xyz": [ 0.951, 8.885, 1.953 ], "form": ".", "ssZp": 4.651, "Dp": 4.657, "splay_angle": 39.916, "splay_distance": 5.993, "splay_ratio": 0.342, "d22": null, "d64": null, "eta": -178.966, "theta": -111.634, "eta_prime": -166.052, "theta_prime": -109.103, "eta_base": -137.155, "theta_base": -52.754, "v0": 0.890, "v1": -22.932, "v2": 34.967, "v3": -35.393, "v4": 21.766, "amplitude": 36.606, "phase_angle": 17.211, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.423, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 179.220, 149.665, 212.547 ], "x_axis": [ -0.249, 0.565, 0.786 ], "y_axis": [ 0.305, -0.725, 0.618 ], "z_axis": [ 0.919, 0.394, 0.008 ], "quaternion": [ 0.092, 0.606, 0.359, 0.704 ] } }, { "index": 1623, "index_chain": 1623, "chain_name": "A", "nt_resnum": 1701, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1701", "linked_nts": [ "///A/1700", "///A/1702" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -77.147, "beta": 174.107, "gamma": 56.634, "delta": 82.975, "epsilon": -146.452, "zeta": -77.559, "epsilon_zeta": -68.893, "bb_type": "BI", "chi": -168.869, "glyco_bond": "anti", "C5prime_xyz": [ -1.099, 8.586, 1.077 ], "P_xyz": [ 1.493, 8.700, 1.438 ], "form": ".", "ssZp": 4.602, "Dp": 4.653, "splay_angle": 26.445, "splay_distance": 4.241, "splay_ratio": 0.232, "d22": 4.699, "d64": 4.938, "eta": 154.735, "theta": -146.657, "eta_prime": -172.721, "theta_prime": -146.886, "eta_base": -85.931, "theta_base": -138.989, "v0": 3.735, "v1": -25.001, "v2": 35.566, "v3": -34.353, "v4": 19.327, "amplitude": 36.478, "phase_angle": 12.837, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.564, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 181.927, 151.670, 217.503 ], "x_axis": [ 0.181, -0.569, 0.802 ], "y_axis": [ 0.318, -0.738, -0.596 ], "z_axis": [ 0.931, 0.363, 0.048 ], "quaternion": [ -0.350, 0.684, -0.092, 0.633 ] } }, { "index": 1624, "index_chain": 1624, "chain_name": "A", "nt_resnum": 1702, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1702", "linked_nts": [ "///A/1701", "///A/1703" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.874, "beta": 179.299, "gamma": 48.254, "delta": 79.481, "epsilon": -149.903, "zeta": -68.855, "epsilon_zeta": -81.049, "bb_type": "BI", "chi": -169.349, "glyco_bond": "anti", "C5prime_xyz": [ -1.608, 8.677, 1.051 ], "P_xyz": [ 0.807, 9.294, 1.821 ], "form": "A", "ssZp": 4.574, "Dp": 4.608, "splay_angle": 25.607, "splay_distance": 4.048, "splay_ratio": 0.225, "d22": 4.057, "d64": 4.396, "eta": 166.132, "theta": -145.812, "eta_prime": 174.388, "theta_prime": -142.449, "eta_base": -165.114, "theta_base": -107.002, "v0": -0.018, "v1": -23.164, "v2": 36.146, "v3": -37.163, "v4": 23.438, "amplitude": 38.139, "phase_angle": 18.608, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.922, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 184.349, 154.989, 218.554 ], "x_axis": [ -0.003, -0.875, 0.484 ], "y_axis": [ 0.183, -0.476, -0.860 ], "z_axis": [ 0.983, 0.086, 0.161 ], "quaternion": [ -0.413, 0.573, -0.302, 0.640 ] } }, { "index": 1625, "index_chain": 1625, "chain_name": "A", "nt_resnum": 1703, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1703", "linked_nts": [ "///A/1702", "///A/1704" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack", "alpha": -67.872, "beta": 168.573, "gamma": 64.489, "delta": 80.375, "epsilon": -155.089, "zeta": -65.948, "epsilon_zeta": -89.141, "bb_type": "BI", "chi": -174.335, "glyco_bond": "anti", "C5prime_xyz": [ -1.514, 8.670, 1.320 ], "P_xyz": [ 1.030, 9.138, 1.673 ], "form": "A", "ssZp": 4.507, "Dp": 4.529, "splay_angle": 22.203, "splay_distance": 3.533, "splay_ratio": 0.196, "d22": 4.492, "d64": 4.304, "eta": 169.868, "theta": -143.709, "eta_prime": -172.482, "theta_prime": -144.693, "eta_base": -120.839, "theta_base": -120.186, "v0": -1.197, "v1": -21.612, "v2": 34.840, "v3": -36.492, "v4": 23.789, "amplitude": 37.170, "phase_angle": 20.395, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.773, "filter_rmsd": 0.061, "frame": { "rmsd": 0.006, "origin": [ 187.541, 154.551, 221.003 ], "x_axis": [ 0.045, -0.986, -0.163 ], "y_axis": [ 0.089, 0.167, -0.982 ], "z_axis": [ 0.995, 0.030, 0.095 ], "quaternion": [ 0.572, -0.443, 0.507, -0.470 ] } }, { "index": 1626, "index_chain": 1626, "chain_name": "A", "nt_resnum": 1704, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1704", "linked_nts": [ "///A/1703", "///A/1705" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -76.430, "beta": -171.123, "gamma": 49.935, "delta": 81.272, "epsilon": -164.250, "zeta": -66.588, "epsilon_zeta": -97.662, "bb_type": "BI", "chi": -161.299, "glyco_bond": "anti", "C5prime_xyz": [ -1.348, 8.700, 0.601 ], "P_xyz": [ 1.136, 9.190, 1.289 ], "form": ".", "ssZp": 4.400, "Dp": 4.512, "splay_angle": 19.180, "splay_distance": 3.555, "splay_ratio": 0.186, "d22": 4.198, "d64": 4.710, "eta": 162.910, "theta": -124.826, "eta_prime": 175.984, "theta_prime": -133.996, "eta_base": -143.210, "theta_base": -111.630, "v0": 2.732, "v1": -24.808, "v2": 36.229, "v3": -35.595, "v4": 20.742, "amplitude": 37.417, "phase_angle": 14.481, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.802, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 190.415, 153.804, 222.918 ], "x_axis": [ -0.016, -0.702, -0.712 ], "y_axis": [ 0.081, 0.708, -0.701 ], "z_axis": [ 0.997, -0.069, 0.045 ], "quaternion": [ 0.659, -0.240, 0.648, -0.297 ] } }, { "index": 1627, "index_chain": 1627, "chain_name": "A", "nt_resnum": 1705, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1705", "linked_nts": [ "///A/1704", "///A/1706" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 155.833, "beta": -168.646, "gamma": 175.926, "delta": 82.291, "epsilon": -144.826, "zeta": -72.804, "epsilon_zeta": -72.022, "bb_type": "BI", "chi": -171.437, "glyco_bond": "anti", "C5prime_xyz": [ -1.210, 8.593, 1.229 ], "P_xyz": [ 0.370, 10.344, 0.092 ], "form": "A", "ssZp": 4.560, "Dp": 4.619, "splay_angle": 27.137, "splay_distance": 4.319, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 162.395, "theta": -170.130, "eta_prime": 178.549, "theta_prime": -164.570, "eta_base": -138.813, "theta_base": -140.758, "v0": 2.618, "v1": -24.019, "v2": 35.137, "v3": -34.574, "v4": 20.169, "amplitude": 36.304, "phase_angle": 14.569, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.972, "filter_rmsd": 0.063, "frame": { "rmsd": 0.007, "origin": [ 192.590, 151.036, 223.418 ], "x_axis": [ -0.048, -0.241, -0.969 ], "y_axis": [ 0.266, 0.932, -0.245 ], "z_axis": [ 0.963, -0.269, 0.019 ], "quaternion": [ 0.690, 0.009, 0.700, -0.184 ] } }, { "index": 1628, "index_chain": 1628, "chain_name": "A", "nt_resnum": 1706, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1706", "linked_nts": [ "///A/1705", "///A/1707" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -60.408, "beta": -169.333, "gamma": 36.799, "delta": 81.898, "epsilon": -168.797, "zeta": -79.200, "epsilon_zeta": -89.597, "bb_type": "BI", "chi": -161.490, "glyco_bond": "anti", "C5prime_xyz": [ -1.172, 8.727, 0.649 ], "P_xyz": [ 1.151, 9.188, 1.763 ], "form": "A", "ssZp": 4.364, "Dp": 4.442, "splay_angle": 23.859, "splay_distance": 4.045, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 167.082, "theta": -138.436, "eta_prime": 177.609, "theta_prime": -142.739, "eta_base": -150.813, "theta_base": -126.983, "v0": 1.876, "v1": -23.517, "v2": 35.076, "v3": -34.959, "v4": 20.880, "amplitude": 36.444, "phase_angle": 15.750, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.502, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 195.783, 148.136, 223.622 ], "x_axis": [ -0.209, 0.354, -0.912 ], "y_axis": [ 0.185, 0.930, 0.319 ], "z_axis": [ 0.960, -0.102, -0.260 ], "quaternion": [ 0.604, 0.174, 0.774, 0.070 ] } }, { "index": 1629, "index_chain": 1629, "chain_name": "A", "nt_resnum": 1707, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1707", "linked_nts": [ "///A/1706", "///A/1708" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 157.893, "beta": -156.029, "gamma": 173.712, "delta": 81.674, "epsilon": -119.239, "zeta": -84.404, "epsilon_zeta": -34.835, "bb_type": "--", "chi": 175.824, "glyco_bond": "anti", "C5prime_xyz": [ -1.453, 8.267, 1.926 ], "P_xyz": [ 0.459, 9.887, 1.242 ], "form": "A", "ssZp": 4.636, "Dp": 4.690, "splay_angle": 22.180, "splay_distance": 3.662, "splay_ratio": 0.199, "d22": 4.470, "d64": 4.407, "eta": 170.401, "theta": -153.912, "eta_prime": -178.357, "theta_prime": -150.703, "eta_base": -148.606, "theta_base": -124.813, "v0": 3.025, "v1": -24.821, "v2": 36.094, "v3": -35.348, "v4": 20.380, "amplitude": 37.213, "phase_angle": 14.090, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.856, "filter_rmsd": 0.105, "frame": { "rmsd": 0.010, "origin": [ 198.483, 145.709, 221.839 ], "x_axis": [ -0.199, 0.699, -0.687 ], "y_axis": [ 0.239, 0.715, 0.657 ], "z_axis": [ 0.950, -0.034, -0.310 ], "quaternion": [ 0.549, 0.314, 0.746, 0.209 ] } }, { "index": 1630, "index_chain": 1630, "chain_name": "A", "nt_resnum": 1708, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1708", "linked_nts": [ "///A/1707", "///A/1709" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop", "alpha": -43.964, "beta": 169.017, "gamma": 29.860, "delta": 76.990, "epsilon": 160.769, "zeta": -94.520, "epsilon_zeta": -104.711, "bb_type": "BI", "chi": -158.502, "glyco_bond": "anti", "C5prime_xyz": [ -1.584, 8.792, 0.411 ], "P_xyz": [ 0.808, 9.592, 1.052 ], "form": ".", "ssZp": 4.163, "Dp": 4.186, "splay_angle": 70.670, "splay_distance": 10.199, "splay_ratio": 0.578, "d22": null, "d64": null, "eta": 158.485, "theta": 148.709, "eta_prime": 177.906, "theta_prime": 151.039, "eta_base": -141.087, "theta_base": 173.096, "v0": -0.463, "v1": -22.977, "v2": 36.327, "v3": -37.673, "v4": 24.101, "amplitude": 38.502, "phase_angle": 19.349, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.097, "filter_rmsd": 0.098, "frame": { "rmsd": 0.010, "origin": [ 200.679, 144.891, 219.025 ], "x_axis": [ -0.188, 0.974, -0.123 ], "y_axis": [ 0.384, 0.189, 0.904 ], "z_axis": [ 0.904, 0.123, -0.410 ], "quaternion": [ 0.384, 0.508, 0.668, 0.384 ] } }, { "index": 1631, "index_chain": 1631, "chain_name": "A", "nt_resnum": 1709, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1709", "linked_nts": [ "///A/1708", "///A/1710" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop", "alpha": -45.827, "beta": -169.361, "gamma": 54.967, "delta": 82.864, "epsilon": -115.834, "zeta": -73.841, "epsilon_zeta": -41.993, "bb_type": "--", "chi": 164.093, "glyco_bond": "--", "C5prime_xyz": [ -1.958, 7.978, 2.414 ], "P_xyz": [ -0.005, 7.808, 4.127 ], "form": ".", "ssZp": 4.449, "Dp": 4.604, "splay_angle": 24.781, "splay_distance": 3.932, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": -149.046, "theta": -117.138, "eta_prime": -162.784, "theta_prime": -110.960, "eta_base": -174.004, "theta_base": -56.310, "v0": 0.118, "v1": -21.679, "v2": 33.781, "v3": -34.688, "v4": 21.831, "amplitude": 35.615, "phase_angle": 18.468, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.397, "filter_rmsd": 0.043, "frame": { "rmsd": 0.010, "origin": [ 207.072, 137.104, 217.442 ], "x_axis": [ -0.573, 0.633, -0.521 ], "y_axis": [ -0.313, 0.419, 0.852 ], "z_axis": [ 0.758, 0.651, -0.042 ], "quaternion": [ 0.448, 0.112, 0.713, 0.527 ] } }, { "index": 1632, "index_chain": 1632, "chain_name": "A", "nt_resnum": 1710, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1710", "linked_nts": [ "///A/1709", "///A/1711" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -50.195, "beta": 167.470, "gamma": 38.013, "delta": 83.529, "epsilon": -160.750, "zeta": -69.359, "epsilon_zeta": -91.391, "bb_type": "BI", "chi": -154.431, "glyco_bond": "anti", "C5prime_xyz": [ -1.364, 8.766, 0.234 ], "P_xyz": [ 1.137, 9.274, 0.786 ], "form": ".", "ssZp": 4.150, "Dp": 4.396, "splay_angle": 24.413, "splay_distance": 4.389, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 154.648, "theta": -118.458, "eta_prime": -179.542, "theta_prime": -130.238, "eta_base": -104.871, "theta_base": -111.393, "v0": -0.791, "v1": -20.006, "v2": 31.945, "v3": -33.366, "v4": 21.573, "amplitude": 33.989, "phase_angle": 19.969, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.283, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 207.932, 140.612, 215.886 ], "x_axis": [ -0.564, 0.708, 0.425 ], "y_axis": [ 0.359, -0.253, 0.898 ], "z_axis": [ 0.744, 0.659, -0.111 ], "quaternion": [ 0.134, 0.447, 0.596, 0.653 ] } }, { "index": 1633, "index_chain": 1633, "chain_name": "A", "nt_resnum": 1711, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1711", "linked_nts": [ "///A/1710", "///A/1712" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate", "alpha": 135.451, "beta": -163.174, "gamma": -171.404, "delta": 79.121, "epsilon": -81.421, "zeta": -138.124, "epsilon_zeta": 56.703, "bb_type": "--", "chi": 178.227, "glyco_bond": "anti", "C5prime_xyz": [ -1.495, 8.347, 1.731 ], "P_xyz": [ -0.356, 10.527, 0.872 ], "form": ".", "ssZp": 4.665, "Dp": 4.780, "splay_angle": 42.066, "splay_distance": 6.151, "splay_ratio": 0.364, "d22": null, "d64": null, "eta": 166.240, "theta": -146.480, "eta_prime": 178.377, "theta_prime": -138.689, "eta_base": -144.391, "theta_base": -66.217, "v0": 4.257, "v1": -27.396, "v2": 38.888, "v3": -37.442, "v4": 20.958, "amplitude": 39.847, "phase_angle": 12.597, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.637, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 209.051, 144.640, 214.550 ], "x_axis": [ -0.427, 0.452, 0.784 ], "y_axis": [ 0.544, -0.564, 0.621 ], "z_axis": [ 0.723, 0.691, -0.005 ], "quaternion": [ -0.033, 0.534, 0.466, 0.705 ] } }, { "index": 1634, "index_chain": 1634, "chain_name": "A", "nt_resnum": 1712, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1712", "linked_nts": [ "///A/1711", "///A/1713" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,bulge", "alpha": 89.708, "beta": -72.700, "gamma": -152.028, "delta": 78.046, "epsilon": -156.203, "zeta": -99.543, "epsilon_zeta": -56.660, "bb_type": "BI", "chi": -48.180, "glyco_bond": "--", "C5prime_xyz": [ -4.550, 5.714, -2.907 ], "P_xyz": [ -6.419, 4.121, -1.997 ], "form": ".", "ssZp": -2.548, "Dp": 4.378, "splay_angle": 68.912, "splay_distance": 11.237, "splay_ratio": 0.566, "d22": null, "d64": null, "eta": -150.013, "theta": 141.456, "eta_prime": -143.817, "theta_prime": 171.042, "eta_base": -63.662, "theta_base": 167.943, "v0": -9.268, "v1": -15.650, "v2": 32.958, "v3": -39.347, "v4": 30.645, "amplitude": 38.902, "phase_angle": 32.092, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.019, "frame": { "rmsd": 0.019, "origin": [ 211.376, 146.288, 220.000 ], "x_axis": [ -0.514, 0.858, 0.017 ], "y_axis": [ 0.302, 0.199, -0.932 ], "z_axis": [ -0.803, -0.474, -0.361 ], "quaternion": [ -0.285, 0.403, 0.720, -0.488 ] } }, { "index": 1635, "index_chain": 1635, "chain_name": "A", "nt_resnum": 1713, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1713", "linked_nts": [ "///A/1712", "///A/1714" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,bulge", "alpha": -160.202, "beta": -168.723, "gamma": 165.937, "delta": 151.852, "epsilon": -83.514, "zeta": 107.553, "epsilon_zeta": 168.932, "bb_type": "--", "chi": -152.752, "glyco_bond": "anti", "C5prime_xyz": [ -2.125, 8.582, 0.636 ], "P_xyz": [ 0.117, 9.884, 0.295 ], "form": "Z", "ssZp": 0.173, "Dp": 0.441, "splay_angle": 38.406, "splay_distance": 6.086, "splay_ratio": 0.360, "d22": null, "d64": null, "eta": -111.370, "theta": 83.717, "eta_prime": -127.256, "theta_prime": 77.993, "eta_base": -147.295, "theta_base": 62.264, "v0": -21.949, "v1": 38.006, "v2": -38.456, "v3": 26.812, "v4": -3.327, "amplitude": 39.657, "phase_angle": 165.860, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.304, "filter_rmsd": 0.040, "frame": { "rmsd": 0.013, "origin": [ 209.442, 153.579, 211.671 ], "x_axis": [ -0.001, 0.052, 0.999 ], "y_axis": [ 0.778, -0.627, 0.033 ], "z_axis": [ 0.628, 0.777, -0.040 ], "quaternion": [ -0.288, 0.646, 0.321, 0.630 ] } }, { "index": 1636, "index_chain": 1636, "chain_name": "A", "nt_resnum": 1714, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1714", "linked_nts": [ "///A/1713", "///A/1715" ], "nt_type": "RNA", "dbn": "(", "summary": "turn,~C3'-endo,non-stack,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,bulge,internal-loop", "alpha": 175.228, "beta": -170.956, "gamma": 53.521, "delta": 83.404, "epsilon": -101.127, "zeta": -84.786, "epsilon_zeta": -16.341, "bb_type": "--", "chi": 100.444, "glyco_bond": "--", "C5prime_xyz": [ -3.901, 5.589, 3.281 ], "P_xyz": [ -3.346, 3.743, 5.066 ], "form": ".", "ssZp": 1.695, "Dp": 4.478, "splay_angle": 54.538, "splay_distance": 7.869, "splay_ratio": 0.461, "d22": null, "d64": null, "eta": 127.292, "theta": -113.020, "eta_prime": 111.890, "theta_prime": -101.479, "eta_base": 106.366, "theta_base": -86.078, "v0": -1.805, "v1": -19.570, "v2": 32.250, "v3": -34.171, "v4": 22.747, "amplitude": 34.669, "phase_angle": 21.528, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6g", "suiteness": 0.204, "filter_rmsd": 0.049, "frame": { "rmsd": 0.018, "origin": [ 210.655, 147.673, 210.846 ], "x_axis": [ 0.363, -0.166, 0.917 ], "y_axis": [ 0.567, -0.742, -0.358 ], "z_axis": [ 0.739, 0.650, -0.175 ], "quaternion": [ -0.334, 0.755, 0.133, 0.548 ] } }, { "index": 1637, "index_chain": 1637, "chain_name": "A", "nt_resnum": 1715, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1715", "linked_nts": [ "///A/1714", "///A/1716" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": -43.217, "beta": -178.276, "gamma": 59.056, "delta": 86.516, "epsilon": -127.746, "zeta": -57.250, "epsilon_zeta": -70.496, "bb_type": "--", "chi": -168.599, "glyco_bond": "anti", "C5prime_xyz": [ -1.328, 8.622, 1.062 ], "P_xyz": [ 1.181, 8.795, 1.768 ], "form": ".", "ssZp": 4.413, "Dp": 4.587, "splay_angle": 39.647, "splay_distance": 6.154, "splay_ratio": 0.339, "d22": 3.850, "d64": 4.228, "eta": -163.545, "theta": -108.568, "eta_prime": -144.333, "theta_prime": -101.073, "eta_base": -124.568, "theta_base": -46.258, "v0": 1.351, "v1": -21.541, "v2": 32.320, "v3": -32.447, "v4": 19.633, "amplitude": 33.683, "phase_angle": 16.353, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.066, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 208.899, 154.472, 207.296 ], "x_axis": [ 0.984, 0.173, 0.049 ], "y_axis": [ 0.180, -0.933, -0.313 ], "z_axis": [ -0.008, 0.317, -0.948 ], "quaternion": [ -0.160, 0.983, 0.090, 0.010 ] } }, { "index": 1638, "index_chain": 1638, "chain_name": "A", "nt_resnum": 1716, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1716", "linked_nts": [ "///A/1715", "///A/1717" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-pair-contact,internal-loop,cap-acceptor", "alpha": -61.906, "beta": 157.275, "gamma": 59.269, "delta": 83.479, "epsilon": -116.937, "zeta": -95.064, "epsilon_zeta": -21.873, "bb_type": "--", "chi": -156.174, "glyco_bond": "anti", "C5prime_xyz": [ -1.320, 8.696, 0.323 ], "P_xyz": [ 1.273, 8.840, -0.058 ], "form": ".", "ssZp": 4.079, "Dp": 4.711, "splay_angle": 74.930, "splay_distance": 11.227, "splay_ratio": 0.609, "d22": 9.171, "d64": 11.296, "eta": 164.969, "theta": -101.567, "eta_prime": -161.291, "theta_prime": -145.106, "eta_base": -83.796, "theta_base": 153.632, "v0": 3.274, "v1": -24.254, "v2": 34.868, "v3": -33.928, "v4": 19.364, "amplitude": 35.859, "phase_angle": 13.500, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.613, "filter_rmsd": 0.105, "frame": { "rmsd": 0.007, "origin": [ 213.719, 153.331, 203.644 ], "x_axis": [ 0.517, -0.801, -0.302 ], "y_axis": [ -0.849, -0.435, -0.301 ], "z_axis": [ 0.110, 0.412, -0.905 ], "quaternion": [ -0.211, 0.845, -0.488, -0.057 ] } }, { "index": 1639, "index_chain": 1639, "chain_name": "A", "nt_resnum": 1717, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1717", "linked_nts": [ "///A/1716", "///A/1718" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": 147.885, "beta": -162.089, "gamma": 50.355, "delta": 86.404, "epsilon": -149.138, "zeta": -50.887, "epsilon_zeta": -98.250, "bb_type": "BI", "chi": -174.698, "glyco_bond": "anti", "C5prime_xyz": [ -1.263, 8.513, 1.414 ], "P_xyz": [ 0.926, 8.511, 2.853 ], "form": ".", "ssZp": 4.449, "Dp": 4.509, "splay_angle": 23.948, "splay_distance": 3.817, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 15.513, "theta": -121.585, "eta_prime": 41.683, "theta_prime": -118.959, "eta_base": 24.851, "theta_base": -67.116, "v0": 1.898, "v1": -21.683, "v2": 31.988, "v3": -31.837, "v4": 18.915, "amplitude": 33.184, "phase_angle": 15.428, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.164, "filter_rmsd": 0.065, "frame": { "rmsd": 0.007, "origin": [ 207.140, 161.998, 200.879 ], "x_axis": [ -0.969, -0.053, 0.243 ], "y_axis": [ -0.105, -0.798, -0.593 ], "z_axis": [ 0.225, -0.600, 0.768 ], "quaternion": [ 0.014, 0.125, -0.317, 0.940 ] } }, { "index": 1640, "index_chain": 1640, "chain_name": "A", "nt_resnum": 1718, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1718", "linked_nts": [ "///A/1717", "///A/1719" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-pair-contact,internal-loop,cap-donor,phosphate,splayed-apart", "alpha": -89.105, "beta": 175.977, "gamma": 64.073, "delta": 83.818, "epsilon": -133.268, "zeta": -67.960, "epsilon_zeta": -65.308, "bb_type": "BI", "chi": -164.751, "glyco_bond": "anti", "C5prime_xyz": [ -1.494, 8.755, 0.783 ], "P_xyz": [ 1.071, 9.256, 1.007 ], "form": ".", "ssZp": 4.410, "Dp": 4.595, "splay_angle": 106.530, "splay_distance": 15.327, "splay_ratio": 0.802, "d22": null, "d64": null, "eta": 159.084, "theta": -126.745, "eta_prime": -176.421, "theta_prime": -140.848, "eta_base": -104.464, "theta_base": -141.827, "v0": -0.990, "v1": -20.371, "v2": 32.641, "v3": -34.141, "v4": 22.167, "amplitude": 34.777, "phase_angle": 20.182, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.375, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 205.397, 160.177, 203.745 ], "x_axis": [ -0.702, -0.638, -0.317 ], "y_axis": [ 0.692, -0.504, -0.517 ], "z_axis": [ 0.170, -0.583, 0.795 ], "quaternion": [ -0.384, -0.043, -0.318, 0.866 ] } }, { "index": 1641, "index_chain": 1641, "chain_name": "A", "nt_resnum": 1719, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1719", "linked_nts": [ "///A/1718", "///A/1720" ], "nt_type": "RNA", "dbn": "(", "summary": "turn,u-turn,anti,~C2'-endo,BII,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,junction-loop,A-minor,phosphate,splayed-apart", "alpha": -66.097, "beta": -173.801, "gamma": 174.674, "delta": 147.050, "epsilon": -123.656, "zeta": 149.140, "epsilon_zeta": 87.204, "bb_type": "BII", "chi": -154.239, "glyco_bond": "anti", "C5prime_xyz": [ -1.522, 8.635, 0.710 ], "P_xyz": [ 0.695, 9.877, 0.059 ], "form": ".", "ssZp": 1.439, "Dp": 1.506, "splay_angle": 69.726, "splay_distance": 10.803, "splay_ratio": 0.574, "d22": null, "d64": null, "eta": -33.216, "theta": 86.928, "eta_prime": -22.771, "theta_prime": 90.380, "eta_base": -37.301, "theta_base": 95.621, "v0": -18.445, "v1": 33.255, "v2": -34.540, "v3": 24.737, "v4": -4.160, "amplitude": 35.325, "phase_angle": 167.893, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 214.593, 153.336, 213.921 ], "x_axis": [ 0.602, -0.725, -0.335 ], "y_axis": [ -0.155, 0.306, -0.939 ], "z_axis": [ 0.783, 0.617, 0.073 ], "quaternion": [ 0.704, -0.553, 0.397, -0.202 ] } }, { "index": 1642, "index_chain": 1642, "chain_name": "A", "nt_resnum": 1720, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1720", "linked_nts": [ "///A/1719", "///A/1721" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop", "alpha": -151.810, "beta": 171.898, "gamma": 61.512, "delta": 82.000, "epsilon": -138.557, "zeta": -54.468, "epsilon_zeta": -84.089, "bb_type": "BI", "chi": -177.014, "glyco_bond": "anti", "C5prime_xyz": [ -1.209, 8.444, 1.527 ], "P_xyz": [ 1.381, 8.569, 1.878 ], "form": ".", "ssZp": 4.721, "Dp": 4.726, "splay_angle": 34.473, "splay_distance": 5.056, "splay_ratio": 0.296, "d22": null, "d64": null, "eta": 140.071, "theta": -118.313, "eta_prime": 127.285, "theta_prime": -115.769, "eta_base": 130.224, "theta_base": -59.138, "v0": 4.925, "v1": -26.725, "v2": 37.149, "v3": -35.274, "v4": 19.140, "amplitude": 37.878, "phase_angle": 11.260, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4g", "suiteness": 0.537, "filter_rmsd": 0.065, "frame": { "rmsd": 0.007, "origin": [ 204.401, 155.285, 210.916 ], "x_axis": [ 0.792, -0.568, 0.224 ], "y_axis": [ 0.598, 0.650, -0.469 ], "z_axis": [ 0.121, 0.505, 0.854 ], "quaternion": [ 0.908, -0.268, -0.028, -0.321 ] } }, { "index": 1643, "index_chain": 1643, "chain_name": "A", "nt_resnum": 1721, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1721", "linked_nts": [ "///A/1720", "///A/1722" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop,A-minor,phosphate", "alpha": -78.914, "beta": 172.295, "gamma": 59.858, "delta": 85.256, "epsilon": -162.036, "zeta": -84.395, "epsilon_zeta": -77.641, "bb_type": "BI", "chi": -174.190, "glyco_bond": "anti", "C5prime_xyz": [ -1.075, 8.307, 1.382 ], "P_xyz": [ 1.535, 8.224, 1.613 ], "form": "A", "ssZp": 4.576, "Dp": 4.575, "splay_angle": 24.890, "splay_distance": 3.711, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 152.704, "theta": -121.468, "eta_prime": -175.271, "theta_prime": -127.284, "eta_base": -85.834, "theta_base": -88.278, "v0": 8.030, "v1": -28.145, "v2": 36.465, "v3": -32.847, "v4": 15.688, "amplitude": 36.685, "phase_angle": 6.285, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.660, "filter_rmsd": 0.041, "frame": { "rmsd": 0.011, "origin": [ 208.617, 155.783, 213.661 ], "x_axis": [ 0.864, 0.341, -0.369 ], "y_axis": [ -0.477, 0.788, -0.390 ], "z_axis": [ 0.158, 0.513, 0.844 ], "quaternion": [ 0.935, -0.241, 0.141, 0.219 ] } }, { "index": 1644, "index_chain": 1644, "chain_name": "A", "nt_resnum": 1722, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1722", "linked_nts": [ "///A/1721", "///A/1723" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor", "alpha": 173.183, "beta": -133.690, "gamma": 142.884, "delta": 83.592, "epsilon": -124.764, "zeta": -89.107, "epsilon_zeta": -35.657, "bb_type": "--", "chi": 174.516, "glyco_bond": "anti", "C5prime_xyz": [ -1.467, 8.172, 1.970 ], "P_xyz": [ 0.991, 8.640, 1.203 ], "form": "A", "ssZp": 4.738, "Dp": 4.739, "splay_angle": 23.575, "splay_distance": 3.581, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 157.185, "theta": -142.144, "eta_prime": -178.471, "theta_prime": -146.617, "eta_base": -111.920, "theta_base": -122.777, "v0": 4.362, "v1": -25.384, "v2": 35.507, "v3": -33.980, "v4": 18.720, "amplitude": 36.282, "phase_angle": 11.862, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 211.192, 157.529, 215.684 ], "x_axis": [ 0.260, 0.809, -0.527 ], "y_axis": [ -0.946, 0.323, 0.029 ], "z_axis": [ 0.193, 0.491, 0.850 ], "quaternion": [ 0.780, -0.148, 0.231, 0.563 ] } }, { "index": 1645, "index_chain": 1645, "chain_name": "A", "nt_resnum": 1723, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1723", "linked_nts": [ "///A/1722", "///A/1724" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -67.126, "beta": 146.481, "gamma": 73.994, "delta": 85.510, "epsilon": -135.053, "zeta": -71.894, "epsilon_zeta": -63.159, "bb_type": "BI", "chi": 175.294, "glyco_bond": "anti", "C5prime_xyz": [ -1.767, 8.324, 1.875 ], "P_xyz": [ 0.831, 8.658, 1.946 ], "form": ".", "ssZp": 4.384, "Dp": 4.505, "splay_angle": 23.904, "splay_distance": 3.591, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 168.739, "theta": -127.852, "eta_prime": -173.333, "theta_prime": -130.841, "eta_base": -127.940, "theta_base": -77.886, "v0": -1.017, "v1": -19.663, "v2": 31.556, "v3": -33.041, "v4": 21.495, "amplitude": 33.641, "phase_angle": 20.281, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.196, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 213.471, 159.062, 217.982 ], "x_axis": [ -0.341, 0.821, -0.459 ], "y_axis": [ -0.929, -0.220, 0.297 ], "z_axis": [ 0.143, 0.527, 0.837 ], "quaternion": [ 0.565, -0.102, 0.266, 0.774 ] } }, { "index": 1646, "index_chain": 1646, "chain_name": "A", "nt_resnum": 1724, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1724", "linked_nts": [ "///A/1723", "///A/1725" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -73.846, "beta": -178.674, "gamma": 46.245, "delta": 88.844, "epsilon": -169.540, "zeta": -79.122, "epsilon_zeta": -90.418, "bb_type": "BI", "chi": -154.585, "glyco_bond": "anti", "C5prime_xyz": [ -0.785, 8.452, 0.340 ], "P_xyz": [ 1.779, 8.287, 0.893 ], "form": "A", "ssZp": 4.211, "Dp": 4.435, "splay_angle": 26.931, "splay_distance": 4.207, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 153.852, "theta": -126.060, "eta_prime": 175.911, "theta_prime": -126.612, "eta_base": -107.947, "theta_base": -105.712, "v0": 9.467, "v1": -27.177, "v2": 33.681, "v3": -29.197, "v4": 12.526, "amplitude": 33.721, "phase_angle": 2.805, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.701, "filter_rmsd": 0.040, "frame": { "rmsd": 0.012, "origin": [ 212.988, 162.025, 219.952 ], "x_axis": [ -0.980, 0.197, -0.028 ], "y_axis": [ -0.175, -0.787, 0.591 ], "z_axis": [ 0.095, 0.584, 0.806 ], "quaternion": [ 0.098, 0.018, 0.311, 0.945 ] } }, { "index": 1647, "index_chain": 1647, "chain_name": "A", "nt_resnum": 1725, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1725", "linked_nts": [ "///A/1724", "///A/1726" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop", "alpha": -167.519, "beta": -133.280, "gamma": 130.661, "delta": 80.708, "epsilon": -95.548, "zeta": -115.767, "epsilon_zeta": 20.218, "bb_type": "--", "chi": -154.626, "glyco_bond": "anti", "C5prime_xyz": [ -1.682, 8.819, 0.165 ], "P_xyz": [ 0.671, 9.023, -0.947 ], "form": ".", "ssZp": 3.621, "Dp": 4.550, "splay_angle": 38.935, "splay_distance": 6.208, "splay_ratio": 0.342, "d22": null, "d64": null, "eta": 177.431, "theta": -139.933, "eta_prime": -168.283, "theta_prime": -131.989, "eta_base": -137.567, "theta_base": -86.345, "v0": -2.523, "v1": -20.070, "v2": 33.734, "v3": -36.124, "v4": 24.396, "amplitude": 36.509, "phase_angle": 22.485, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.100, "frame": { "rmsd": 0.007, "origin": [ 212.322, 165.162, 222.675 ], "x_axis": [ -0.927, -0.292, 0.237 ], "y_axis": [ 0.376, -0.687, 0.622 ], "z_axis": [ -0.019, 0.666, 0.746 ], "quaternion": [ -0.182, 0.059, 0.351, 0.916 ] } }, { "index": 1648, "index_chain": 1648, "chain_name": "A", "nt_resnum": 1726, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1726", "linked_nts": [ "///A/1725", "///A/1727" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": -42.610, "beta": 106.406, "gamma": 80.796, "delta": 85.146, "epsilon": 174.675, "zeta": 45.735, "epsilon_zeta": 128.940, "bb_type": "--", "chi": -153.858, "glyco_bond": "anti", "C5prime_xyz": [ -1.123, 8.750, 0.185 ], "P_xyz": [ 0.748, 8.128, -1.528 ], "form": ".", "ssZp": 4.069, "Dp": 4.203, "splay_angle": 100.272, "splay_distance": 13.865, "splay_ratio": 0.768, "d22": null, "d64": null, "eta": 156.953, "theta": -17.696, "eta_prime": -156.714, "theta_prime": -58.807, "eta_base": -94.069, "theta_base": -53.139, "v0": 1.592, "v1": -21.912, "v2": 32.665, "v3": -32.687, "v4": 19.705, "amplitude": 33.987, "phase_angle": 16.032, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.161, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 210.252, 164.732, 228.512 ], "x_axis": [ -0.257, -0.726, 0.638 ], "y_axis": [ 0.956, -0.094, 0.279 ], "z_axis": [ -0.142, 0.681, 0.718 ], "quaternion": [ 0.584, -0.172, -0.334, -0.719 ] } }, { "index": 1649, "index_chain": 1649, "chain_name": "A", "nt_resnum": 1727, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1727", "linked_nts": [ "///A/1726", "///A/1728" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,phosphate,splayed-apart", "alpha": -160.124, "beta": -110.155, "gamma": 44.726, "delta": 82.174, "epsilon": 179.712, "zeta": -82.387, "epsilon_zeta": -97.901, "bb_type": "BI", "chi": -154.526, "glyco_bond": "anti", "C5prime_xyz": [ -1.007, 8.658, 0.240 ], "P_xyz": [ 0.891, 8.647, 2.048 ], "form": "A", "ssZp": 4.204, "Dp": 4.362, "splay_angle": 22.216, "splay_distance": 3.463, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 140.155, "theta": -141.057, "eta_prime": 179.113, "theta_prime": -137.937, "eta_base": -140.271, "theta_base": -107.189, "v0": 4.554, "v1": -25.680, "v2": 35.993, "v3": -34.337, "v4": 18.785, "amplitude": 36.753, "phase_angle": 11.674, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 219.958, 164.494, 238.410 ], "x_axis": [ 0.288, -0.677, -0.678 ], "y_axis": [ -0.492, 0.502, -0.711 ], "z_axis": [ 0.821, 0.538, -0.188 ], "quaternion": [ 0.633, -0.494, 0.592, -0.073 ] } }, { "index": 1650, "index_chain": 1650, "chain_name": "A", "nt_resnum": 1728, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1728", "linked_nts": [ "///A/1727", "///A/1729" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 179.032, "beta": -130.913, "gamma": 137.854, "delta": 78.181, "epsilon": -138.981, "zeta": -84.329, "epsilon_zeta": -54.652, "bb_type": "BI", "chi": -174.246, "glyco_bond": "anti", "C5prime_xyz": [ -1.512, 8.657, 1.344 ], "P_xyz": [ 0.925, 9.026, 0.504 ], "form": "A", "ssZp": 4.628, "Dp": 4.657, "splay_angle": 23.279, "splay_distance": 3.678, "splay_ratio": 0.204, "d22": 4.144, "d64": 4.319, "eta": 159.569, "theta": -142.911, "eta_prime": 178.347, "theta_prime": -148.054, "eta_base": -137.067, "theta_base": -122.474, "v0": -0.712, "v1": -22.619, "v2": 36.121, "v3": -37.516, "v4": 24.083, "amplitude": 38.354, "phase_angle": 19.649, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.007, "origin": [ 223.326, 165.152, 237.951 ], "x_axis": [ -0.087, -0.358, -0.930 ], "y_axis": [ -0.517, 0.814, -0.265 ], "z_axis": [ 0.852, 0.457, -0.255 ], "quaternion": [ 0.607, -0.298, 0.734, 0.065 ] } }, { "index": 1651, "index_chain": 1651, "chain_name": "A", "nt_resnum": 1729, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1729", "linked_nts": [ "///A/1728", "///A/1730" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -40.703, "beta": 160.684, "gamma": 40.320, "delta": 79.150, "epsilon": -154.121, "zeta": -92.400, "epsilon_zeta": -61.721, "bb_type": "BI", "chi": -167.047, "glyco_bond": "anti", "C5prime_xyz": [ -1.483, 8.737, 0.935 ], "P_xyz": [ 1.043, 9.112, 1.471 ], "form": "A", "ssZp": 4.529, "Dp": 4.579, "splay_angle": 22.337, "splay_distance": 3.618, "splay_ratio": 0.198, "d22": 4.456, "d64": 4.337, "eta": 168.193, "theta": -136.861, "eta_prime": -177.078, "theta_prime": -144.094, "eta_base": -131.008, "theta_base": -124.912, "v0": -0.430, "v1": -22.687, "v2": 35.947, "v3": -37.231, "v4": 23.708, "amplitude": 38.081, "phase_angle": 19.272, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.376, "filter_rmsd": 0.060, "frame": { "rmsd": 0.005, "origin": [ 226.726, 165.098, 236.548 ], "x_axis": [ -0.416, 0.148, -0.897 ], "y_axis": [ -0.374, 0.871, 0.317 ], "z_axis": [ 0.829, 0.468, -0.307 ], "quaternion": [ 0.536, -0.070, 0.805, 0.244 ] } }, { "index": 1652, "index_chain": 1652, "chain_name": "A", "nt_resnum": 1730, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1730", "linked_nts": [ "///A/1729", "///A/1731" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 170.438, "beta": -156.694, "gamma": 152.998, "delta": 80.612, "epsilon": -136.890, "zeta": -72.412, "epsilon_zeta": -64.478, "bb_type": "BI", "chi": 177.472, "glyco_bond": "anti", "C5prime_xyz": [ -1.194, 8.299, 1.845 ], "P_xyz": [ 1.027, 9.406, 1.042 ], "form": "A", "ssZp": 4.727, "Dp": 4.730, "splay_angle": 24.162, "splay_distance": 3.724, "splay_ratio": 0.213, "d22": 4.326, "d64": 4.241, "eta": 151.003, "theta": -147.618, "eta_prime": 164.746, "theta_prime": -147.417, "eta_base": -157.952, "theta_base": -114.713, "v0": 4.858, "v1": -26.834, "v2": 37.467, "v3": -35.669, "v4": 19.387, "amplitude": 38.228, "phase_angle": 11.454, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.082, "filter_rmsd": 0.064, "frame": { "rmsd": 0.006, "origin": [ 229.725, 164.981, 234.527 ], "x_axis": [ -0.777, 0.424, -0.465 ], "y_axis": [ -0.036, 0.708, 0.705 ], "z_axis": [ 0.628, 0.565, -0.535 ], "quaternion": [ 0.314, 0.112, 0.869, 0.365 ] } }, { "index": 1653, "index_chain": 1653, "chain_name": "A", "nt_resnum": 1731, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1731", "linked_nts": [ "///A/1730", "///A/1732" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -63.562, "beta": 179.288, "gamma": 51.387, "delta": 83.738, "epsilon": -149.595, "zeta": -70.654, "epsilon_zeta": -78.941, "bb_type": "BI", "chi": -165.982, "glyco_bond": "anti", "C5prime_xyz": [ -1.193, 8.656, 0.900 ], "P_xyz": [ 1.336, 8.859, 1.560 ], "form": ".", "ssZp": 4.474, "Dp": 4.582, "splay_angle": 24.201, "splay_distance": 3.685, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 168.579, "theta": -140.743, "eta_prime": -175.678, "theta_prime": -137.011, "eta_base": -127.242, "theta_base": -91.066, "v0": 2.715, "v1": -23.671, "v2": 34.429, "v3": -33.839, "v4": 19.644, "amplitude": 35.537, "phase_angle": 14.344, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.908, "filter_rmsd": 0.062, "frame": { "rmsd": 0.005, "origin": [ 230.622, 166.278, 231.154 ], "x_axis": [ -0.663, 0.728, 0.177 ], "y_axis": [ 0.505, 0.260, 0.823 ], "z_axis": [ 0.553, 0.635, -0.540 ], "quaternion": [ 0.120, 0.393, 0.785, 0.465 ] } }, { "index": 1654, "index_chain": 1654, "chain_name": "A", "nt_resnum": 1732, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1732", "linked_nts": [ "///A/1731", "///A/1733" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -64.814, "beta": 172.693, "gamma": 52.650, "delta": 86.313, "epsilon": -148.921, "zeta": -58.694, "epsilon_zeta": -90.227, "bb_type": "BI", "chi": -158.146, "glyco_bond": "anti", "C5prime_xyz": [ -0.927, 8.561, 0.505 ], "P_xyz": [ 1.693, 8.435, 0.712 ], "form": ".", "ssZp": 4.362, "Dp": 4.631, "splay_angle": 26.475, "splay_distance": 4.442, "splay_ratio": 0.235, "d22": null, "d64": null, "eta": 167.090, "theta": -132.366, "eta_prime": -174.719, "theta_prime": -137.363, "eta_base": -113.135, "theta_base": -134.143, "v0": 8.100, "v1": -27.320, "v2": 35.160, "v3": -31.480, "v4": 14.811, "amplitude": 35.337, "phase_angle": 5.736, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.910, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 231.317, 169.572, 229.654 ], "x_axis": [ -0.107, 0.673, 0.732 ], "y_axis": [ 0.861, -0.306, 0.407 ], "z_axis": [ 0.498, 0.674, -0.546 ], "quaternion": [ -0.101, 0.661, 0.580, 0.465 ] } }, { "index": 1655, "index_chain": 1655, "chain_name": "A", "nt_resnum": 1733, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1733", "linked_nts": [ "///A/1732", "///A/1734" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,internal-loop", "alpha": -112.038, "beta": 146.393, "gamma": 123.929, "delta": 82.405, "epsilon": -106.276, "zeta": -177.859, "epsilon_zeta": 71.583, "bb_type": "BII", "chi": -174.169, "glyco_bond": "anti", "C5prime_xyz": [ -1.559, 8.532, 1.354 ], "P_xyz": [ 0.213, 9.961, 0.068 ], "form": ".", "ssZp": 4.493, "Dp": 4.663, "splay_angle": 74.423, "splay_distance": 10.690, "splay_ratio": 0.606, "d22": null, "d64": null, "eta": -175.364, "theta": 114.842, "eta_prime": -164.170, "theta_prime": 134.268, "eta_base": -144.752, "theta_base": 158.950, "v0": 1.420, "v1": -22.985, "v2": 34.544, "v3": -34.733, "v4": 21.017, "amplitude": 36.014, "phase_angle": 16.427, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.006, "origin": [ 231.311, 172.787, 226.589 ], "x_axis": [ 0.198, 0.639, 0.743 ], "y_axis": [ 0.876, -0.455, 0.158 ], "z_axis": [ 0.439, 0.620, -0.650 ], "quaternion": [ -0.152, 0.759, 0.499, 0.390 ] } }, { "index": 1656, "index_chain": 1656, "chain_name": "A", "nt_resnum": 1734, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1734", "linked_nts": [ "///A/1733", "///A/1735" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -64.502, "beta": 150.500, "gamma": 47.347, "delta": 83.870, "epsilon": -137.555, "zeta": -90.718, "epsilon_zeta": -46.837, "bb_type": "BI", "chi": -168.952, "glyco_bond": "anti", "C5prime_xyz": [ -1.117, 8.443, 1.069 ], "P_xyz": [ 1.503, 8.261, 1.053 ], "form": "A", "ssZp": 4.641, "Dp": 4.742, "splay_angle": 20.689, "splay_distance": 3.183, "splay_ratio": 0.180, "d22": null, "d64": null, "eta": -166.313, "theta": -145.597, "eta_prime": -178.645, "theta_prime": -146.283, "eta_base": 165.823, "theta_base": -135.578, "v0": 7.001, "v1": -27.485, "v2": 36.414, "v3": -33.380, "v4": 16.666, "amplitude": 36.763, "phase_angle": 7.904, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.294, "filter_rmsd": 0.038, "frame": { "rmsd": 0.007, "origin": [ 233.209, 170.773, 216.263 ], "x_axis": [ -0.344, 0.682, 0.645 ], "y_axis": [ 0.686, -0.287, 0.669 ], "z_axis": [ 0.641, 0.673, -0.369 ], "quaternion": [ -0.002, 0.573, 0.597, 0.562 ] } }, { "index": 1657, "index_chain": 1657, "chain_name": "A", "nt_resnum": 1735, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1735", "linked_nts": [ "///A/1734", "///A/1736" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -57.905, "beta": 154.080, "gamma": 59.515, "delta": 82.359, "epsilon": -134.732, "zeta": -62.292, "epsilon_zeta": -72.440, "bb_type": "BI", "chi": -164.068, "glyco_bond": "anti", "C5prime_xyz": [ -1.469, 8.659, 0.782 ], "P_xyz": [ 1.127, 8.892, 0.559 ], "form": ".", "ssZp": 4.451, "Dp": 4.666, "splay_angle": 37.741, "splay_distance": 5.801, "splay_ratio": 0.323, "d22": null, "d64": null, "eta": 170.382, "theta": -119.617, "eta_prime": -178.005, "theta_prime": -117.218, "eta_base": -151.854, "theta_base": -72.236, "v0": 2.311, "v1": -24.266, "v2": 35.788, "v3": -35.442, "v4": 20.879, "amplitude": 37.069, "phase_angle": 15.112, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.604, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 233.907, 173.012, 214.111 ], "x_axis": [ -0.051, 0.448, 0.892 ], "y_axis": [ 0.859, -0.436, 0.268 ], "z_axis": [ 0.509, 0.780, -0.363 ], "quaternion": [ -0.194, 0.661, 0.495, 0.530 ] } }, { "index": 1658, "index_chain": 1658, "chain_name": "A", "nt_resnum": 1736, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1736", "linked_nts": [ "///A/1735", "///A/1737" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop", "alpha": -62.880, "beta": 160.461, "gamma": 64.380, "delta": 82.886, "epsilon": -141.455, "zeta": -65.866, "epsilon_zeta": -75.589, "bb_type": "BI", "chi": -165.853, "glyco_bond": "anti", "C5prime_xyz": [ -1.221, 8.642, 0.890 ], "P_xyz": [ 1.380, 8.812, 0.649 ], "form": "A", "ssZp": 4.528, "Dp": 4.665, "splay_angle": 24.658, "splay_distance": 3.993, "splay_ratio": 0.217, "d22": 4.197, "d64": 4.357, "eta": 166.854, "theta": -129.338, "eta_prime": -163.379, "theta_prime": -130.563, "eta_base": -91.764, "theta_base": -101.226, "v0": 3.723, "v1": -25.217, "v2": 35.953, "v3": -34.792, "v4": 19.619, "amplitude": 36.894, "phase_angle": 12.963, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.695, "filter_rmsd": 0.059, "frame": { "rmsd": 0.007, "origin": [ 237.126, 176.927, 216.932 ], "x_axis": [ 0.717, -0.194, 0.670 ], "y_axis": [ 0.463, -0.586, -0.665 ], "z_axis": [ 0.522, 0.787, -0.330 ], "quaternion": [ -0.447, 0.811, 0.083, 0.367 ] } }, { "index": 1659, "index_chain": 1659, "chain_name": "A", "nt_resnum": 1737, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1737", "linked_nts": [ "///A/1736", "///A/1738" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": -61.402, "beta": 173.602, "gamma": 53.566, "delta": 78.924, "epsilon": -160.667, "zeta": -101.635, "epsilon_zeta": -59.032, "bb_type": "BI", "chi": -153.658, "glyco_bond": "anti", "C5prime_xyz": [ -1.619, 8.818, 0.119 ], "P_xyz": [ 0.891, 9.517, 0.123 ], "form": ".", "ssZp": 4.225, "Dp": 4.509, "splay_angle": 115.140, "splay_distance": 15.544, "splay_ratio": 0.844, "d22": 9.194, "d64": 12.069, "eta": 167.098, "theta": -179.978, "eta_prime": -172.295, "theta_prime": 149.002, "eta_base": -122.079, "theta_base": 109.576, "v0": -1.512, "v1": -21.880, "v2": 35.656, "v3": -37.564, "v4": 24.641, "amplitude": 38.159, "phase_angle": 20.870, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.950, "filter_rmsd": 0.102, "frame": { "rmsd": 0.006, "origin": [ 239.932, 179.582, 217.942 ], "x_axis": [ 0.821, -0.556, 0.132 ], "y_axis": [ -0.005, -0.239, -0.971 ], "z_axis": [ 0.571, 0.796, -0.199 ], "quaternion": [ 0.588, -0.752, 0.187, -0.234 ] } }, { "index": 1660, "index_chain": 1660, "chain_name": "A", "nt_resnum": 1738, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1738", "linked_nts": [ "///A/1737", "///A/1739" ], "nt_type": "RNA", "dbn": "{", "summary": "pseudoknotted,turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart", "alpha": -161.321, "beta": 160.502, "gamma": 47.912, "delta": 143.938, "epsilon": -91.486, "zeta": -59.746, "epsilon_zeta": -31.740, "bb_type": "--", "chi": -121.749, "glyco_bond": "anti", "C5prime_xyz": [ -2.123, 8.550, -1.169 ], "P_xyz": [ 0.317, 9.350, -0.663 ], "form": ".", "ssZp": 0.799, "Dp": 0.811, "splay_angle": 106.445, "splay_distance": 15.729, "splay_ratio": 0.801, "d22": 7.566, "d64": 9.071, "eta": 81.327, "theta": -34.322, "eta_prime": 91.220, "theta_prime": -50.640, "eta_base": 67.258, "theta_base": -24.960, "v0": -23.525, "v1": 36.085, "v2": -34.181, "v3": 21.513, "v4": 1.061, "amplitude": 36.473, "phase_angle": 159.584, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1z", "suiteness": 0.705, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 231.692, 185.856, 206.349 ], "x_axis": [ -0.105, -0.868, -0.485 ], "y_axis": [ 0.852, -0.330, 0.406 ], "z_axis": [ -0.512, -0.370, 0.775 ], "quaternion": [ 0.579, 0.335, -0.012, -0.743 ] } }, { "index": 1661, "index_chain": 1661, "chain_name": "A", "nt_resnum": 1739, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1739", "linked_nts": [ "///A/1738", "///A/1740" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,splayed-apart", "alpha": -77.943, "beta": -165.287, "gamma": 60.268, "delta": 146.447, "epsilon": -118.720, "zeta": 101.150, "epsilon_zeta": 140.131, "bb_type": "--", "chi": -143.869, "glyco_bond": "anti", "C5prime_xyz": [ -1.787, 8.775, 0.035 ], "P_xyz": [ 0.190, 9.396, 1.636 ], "form": "Z", "ssZp": 1.206, "Dp": 1.306, "splay_angle": 42.688, "splay_distance": 6.723, "splay_ratio": 0.389, "d22": null, "d64": null, "eta": 161.822, "theta": 123.256, "eta_prime": -143.123, "theta_prime": 74.764, "eta_base": -131.648, "theta_base": 71.295, "v0": -22.018, "v1": 36.103, "v2": -35.558, "v3": 23.806, "v4": -1.337, "amplitude": 37.138, "phase_angle": 163.230, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.773, "filter_rmsd": 0.060, "frame": { "rmsd": 0.006, "origin": [ 243.312, 179.952, 215.154 ], "x_axis": [ 0.064, -0.182, -0.981 ], "y_axis": [ -0.618, 0.765, -0.182 ], "z_axis": [ 0.783, 0.618, -0.063 ], "quaternion": [ 0.664, -0.301, 0.664, 0.164 ] } }, { "index": 1662, "index_chain": 1662, "chain_name": "A", "nt_resnum": 1740, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1740", "linked_nts": [ "///A/1739", "///A/1741" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor", "alpha": 58.483, "beta": -152.807, "gamma": 165.978, "delta": 81.854, "epsilon": -158.830, "zeta": -62.810, "epsilon_zeta": -96.019, "bb_type": "BI", "chi": 59.392, "glyco_bond": "syn", "C5prime_xyz": [ -5.216, 4.047, 1.722 ], "P_xyz": [ -4.941, 3.400, 4.255 ], "form": ".", "ssZp": -2.755, "Dp": 4.476, "splay_angle": 26.451, "splay_distance": 4.490, "splay_ratio": 0.260, "d22": null, "d64": null, "eta": 106.425, "theta": -116.565, "eta_prime": 104.463, "theta_prime": -115.685, "eta_base": 137.298, "theta_base": -131.953, "v0": -0.644, "v1": -21.386, "v2": 33.952, "v3": -35.280, "v4": 22.652, "amplitude": 36.039, "phase_angle": 19.591, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6n", "suiteness": 0.427, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 236.899, 181.831, 215.883 ], "x_axis": [ -0.166, -0.136, -0.977 ], "y_axis": [ -0.582, 0.813, -0.014 ], "z_axis": [ 0.796, 0.566, -0.214 ], "quaternion": [ 0.599, -0.242, 0.740, 0.186 ] } }, { "index": 1663, "index_chain": 1663, "chain_name": "A", "nt_resnum": 1741, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1741", "linked_nts": [ "///A/1740", "///A/1742" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop", "alpha": 162.102, "beta": -126.547, "gamma": 175.656, "delta": 83.242, "epsilon": -139.810, "zeta": -67.955, "epsilon_zeta": -71.855, "bb_type": "BI", "chi": -162.383, "glyco_bond": "anti", "C5prime_xyz": [ -1.613, 8.815, 0.658 ], "P_xyz": [ 0.013, 9.658, -1.214 ], "form": ".", "ssZp": 4.299, "Dp": 4.507, "splay_angle": 30.473, "splay_distance": 4.786, "splay_ratio": 0.263, "d22": null, "d64": null, "eta": -173.977, "theta": -146.220, "eta_prime": -135.584, "theta_prime": -146.400, "eta_base": -119.433, "theta_base": -93.228, "v0": -2.051, "v1": -19.464, "v2": 32.235, "v3": -34.340, "v4": 22.955, "amplitude": 34.742, "phase_angle": 21.900, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.395, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 237.453, 177.408, 216.423 ], "x_axis": [ 0.704, -0.172, 0.689 ], "y_axis": [ -0.479, 0.601, 0.640 ], "z_axis": [ -0.524, -0.780, 0.341 ], "quaternion": [ 0.813, 0.436, -0.373, 0.094 ] } }, { "index": 1664, "index_chain": 1664, "chain_name": "A", "nt_resnum": 1742, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1742", "linked_nts": [ "///A/1741", "///A/1743" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -63.910, "beta": 164.705, "gamma": 57.494, "delta": 83.538, "epsilon": -167.287, "zeta": 44.351, "epsilon_zeta": 148.362, "bb_type": "--", "chi": -146.931, "glyco_bond": "anti", "C5prime_xyz": [ -1.250, 8.687, -0.249 ], "P_xyz": [ 1.313, 8.772, -0.775 ], "form": ".", "ssZp": 4.072, "Dp": 4.507, "splay_angle": 23.397, "splay_distance": 3.686, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 161.017, "theta": -12.594, "eta_prime": -170.626, "theta_prime": -58.613, "eta_base": -96.933, "theta_base": -102.481, "v0": 4.462, "v1": -25.562, "v2": 35.754, "v3": -34.181, "v4": 18.757, "amplitude": 36.521, "phase_angle": 11.763, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.910, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 237.151, 175.100, 220.604 ], "x_axis": [ -0.037, 0.328, 0.944 ], "y_axis": [ -0.931, 0.332, -0.152 ], "z_axis": [ -0.363, -0.885, 0.293 ], "quaternion": [ 0.630, 0.291, -0.518, 0.500 ] } }, { "index": 1665, "index_chain": 1665, "chain_name": "A", "nt_resnum": 1743, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1743", "linked_nts": [ "///A/1742", "///A/1744" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": 84.141, "beta": 178.663, "gamma": 103.784, "delta": 146.279, "epsilon": -92.472, "zeta": 136.820, "epsilon_zeta": 130.708, "bb_type": "BII", "chi": -138.430, "glyco_bond": "anti", "C5prime_xyz": [ -1.726, 8.689, -0.213 ], "P_xyz": [ 0.867, 9.046, -0.208 ], "form": ".", "ssZp": 0.830, "Dp": 0.834, "splay_angle": 113.835, "splay_distance": 16.823, "splay_ratio": 0.838, "d22": null, "d64": null, "eta": 58.199, "theta": 158.110, "eta_prime": 115.229, "theta_prime": 105.460, "eta_base": 116.898, "theta_base": 84.578, "v0": -20.791, "v1": 34.853, "v2": -34.812, "v3": 23.687, "v4": -2.036, "amplitude": 36.144, "phase_angle": 164.396, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 235.984, 173.150, 223.507 ], "x_axis": [ 0.455, -0.371, -0.810 ], "y_axis": [ -0.857, 0.065, -0.512 ], "z_axis": [ 0.243, 0.926, -0.288 ], "quaternion": [ 0.555, -0.648, 0.474, 0.219 ] } }, { "index": 1666, "index_chain": 1666, "chain_name": "A", "nt_resnum": 1744, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1744", "linked_nts": [ "///A/1743", "///A/1745" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart", "alpha": 64.252, "beta": -142.702, "gamma": 50.971, "delta": 146.563, "epsilon": -127.916, "zeta": -78.810, "epsilon_zeta": -49.106, "bb_type": "--", "chi": -140.154, "glyco_bond": "anti", "C5prime_xyz": [ -2.060, 8.787, -0.154 ], "P_xyz": [ -0.735, 9.766, 1.884 ], "form": ".", "ssZp": 1.244, "Dp": 1.467, "splay_angle": 108.786, "splay_distance": 17.156, "splay_ratio": 0.814, "d22": null, "d64": null, "eta": 21.840, "theta": -41.353, "eta_prime": 21.748, "theta_prime": -73.990, "eta_base": 18.319, "theta_base": -96.359, "v0": -23.649, "v1": 37.578, "v2": -36.376, "v3": 23.725, "v4": -0.283, "amplitude": 38.333, "phase_angle": 161.611, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.010, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 219.864, 169.928, 227.082 ], "x_axis": [ -0.789, 0.515, -0.335 ], "y_axis": [ 0.588, 0.792, -0.165 ], "z_axis": [ 0.180, -0.327, -0.928 ], "quaternion": [ 0.137, 0.294, 0.937, -0.131 ] } }, { "index": 1667, "index_chain": 1667, "chain_name": "A", "nt_resnum": 1745, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1745", "linked_nts": [ "///A/1744", "///A/1746" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,cap-acceptor,phosphate,splayed-apart", "alpha": 149.801, "beta": -140.405, "gamma": -78.834, "delta": 81.675, "epsilon": -142.743, "zeta": -28.072, "epsilon_zeta": -114.670, "bb_type": "--", "chi": -141.118, "glyco_bond": "anti", "C5prime_xyz": [ -1.376, 8.648, -0.634 ], "P_xyz": [ -1.511, 11.204, -1.163 ], "form": ".", "ssZp": 3.677, "Dp": 4.694, "splay_angle": 52.072, "splay_distance": 8.083, "splay_ratio": 0.439, "d22": null, "d64": null, "eta": -94.051, "theta": -151.332, "eta_prime": -60.922, "theta_prime": -127.636, "eta_base": -23.098, "theta_base": -72.905, "v0": 3.286, "v1": -25.430, "v2": 36.617, "v3": -35.731, "v4": 20.481, "amplitude": 37.691, "phase_angle": 13.711, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 234.054, 166.552, 218.051 ], "x_axis": [ 0.682, -0.520, 0.514 ], "y_axis": [ -0.393, 0.333, 0.857 ], "z_axis": [ -0.617, -0.786, 0.023 ], "quaternion": [ 0.714, 0.576, -0.396, -0.045 ] } }, { "index": 1668, "index_chain": 1668, "chain_name": "A", "nt_resnum": 1746, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1746", "linked_nts": [ "///A/1745", "///A/1747" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor,phosphate", "alpha": -89.660, "beta": 172.287, "gamma": 77.044, "delta": 81.147, "epsilon": -120.515, "zeta": -51.995, "epsilon_zeta": -68.520, "bb_type": "--", "chi": -150.357, "glyco_bond": "anti", "C5prime_xyz": [ -1.236, 8.693, -0.087 ], "P_xyz": [ 1.207, 8.930, -1.004 ], "form": ".", "ssZp": 3.868, "Dp": 4.778, "splay_angle": 39.274, "splay_distance": 6.423, "splay_ratio": 0.337, "d22": null, "d64": null, "eta": 167.705, "theta": -109.150, "eta_prime": -151.951, "theta_prime": -107.194, "eta_base": -85.358, "theta_base": -74.291, "v0": 3.209, "v1": -25.391, "v2": 36.782, "v3": -35.910, "v4": 20.594, "amplitude": 37.883, "phase_angle": 13.847, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.010, "filter_rmsd": 0.038, "frame": { "rmsd": 0.009, "origin": [ 235.806, 164.676, 225.716 ], "x_axis": [ -0.174, 0.342, 0.923 ], "y_axis": [ -0.959, 0.154, -0.238 ], "z_axis": [ -0.224, -0.927, 0.301 ], "quaternion": [ 0.566, 0.304, -0.507, 0.575 ] } }, { "index": 1669, "index_chain": 1669, "chain_name": "A", "nt_resnum": 1747, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1747", "linked_nts": [ "///A/1746", "///A/1748" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -87.884, "beta": 147.041, "gamma": 100.472, "delta": 78.732, "epsilon": -145.327, "zeta": -53.998, "epsilon_zeta": -91.329, "bb_type": "BI", "chi": 178.344, "glyco_bond": "anti", "C5prime_xyz": [ -1.831, 8.504, 1.706 ], "P_xyz": [ 0.368, 9.687, 0.945 ], "form": ".", "ssZp": 4.596, "Dp": 4.620, "splay_angle": 23.372, "splay_distance": 4.430, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": 162.171, "theta": -112.220, "eta_prime": -161.803, "theta_prime": -133.140, "eta_base": -98.501, "theta_base": -106.010, "v0": -0.786, "v1": -22.628, "v2": 36.125, "v3": -37.582, "v4": 24.164, "amplitude": 38.381, "phase_angle": 19.744, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 232.337, 164.507, 231.118 ], "x_axis": [ -0.720, 0.669, 0.183 ], "y_axis": [ -0.442, -0.240, -0.864 ], "z_axis": [ -0.534, -0.703, 0.469 ], "quaternion": [ 0.357, -0.113, -0.503, 0.779 ] } }, { "index": 1670, "index_chain": 1670, "chain_name": "A", "nt_resnum": 1748, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1748", "linked_nts": [ "///A/1747", "///A/1749" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 163.151, "beta": 166.115, "gamma": 169.250, "delta": 81.104, "epsilon": -131.964, "zeta": -75.853, "epsilon_zeta": -56.112, "bb_type": "BI", "chi": -177.144, "glyco_bond": "anti", "C5prime_xyz": [ -1.358, 8.469, 1.530 ], "P_xyz": [ -0.127, 10.625, 0.705 ], "form": "A", "ssZp": 4.710, "Dp": 4.739, "splay_angle": 23.799, "splay_distance": 3.840, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 146.334, "theta": -169.779, "eta_prime": 165.715, "theta_prime": -162.363, "eta_base": -140.996, "theta_base": -129.278, "v0": 3.948, "v1": -25.851, "v2": 36.768, "v3": -35.481, "v4": 19.874, "amplitude": 37.694, "phase_angle": 12.726, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.463, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 229.838, 165.020, 234.740 ], "x_axis": [ -0.718, 0.478, -0.506 ], "y_axis": [ 0.054, -0.687, -0.725 ], "z_axis": [ -0.694, -0.548, 0.467 ], "quaternion": [ 0.125, -0.354, -0.376, 0.847 ] } }, { "index": 1671, "index_chain": 1671, "chain_name": "A", "nt_resnum": 1749, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1749", "linked_nts": [ "///A/1748", "///A/1750" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -66.876, "beta": 168.417, "gamma": 56.239, "delta": 79.357, "epsilon": -160.125, "zeta": -73.302, "epsilon_zeta": -86.823, "bb_type": "BI", "chi": -175.658, "glyco_bond": "anti", "C5prime_xyz": [ -1.876, 8.619, 1.371 ], "P_xyz": [ 0.578, 9.296, 1.945 ], "form": "A", "ssZp": 4.493, "Dp": 4.506, "splay_angle": 23.243, "splay_distance": 3.637, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 159.745, "theta": -155.673, "eta_prime": 177.272, "theta_prime": -153.737, "eta_base": -137.047, "theta_base": -130.642, "v0": -1.844, "v1": -21.483, "v2": 35.247, "v3": -37.306, "v4": 24.661, "amplitude": 37.835, "phase_angle": 21.316, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.829, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 226.608, 165.124, 236.814 ], "x_axis": [ -0.359, 0.141, -0.923 ], "y_axis": [ 0.471, -0.826, -0.310 ], "z_axis": [ -0.806, -0.545, 0.230 ], "quaternion": [ -0.106, -0.556, -0.275, 0.777 ] } }, { "index": 1672, "index_chain": 1672, "chain_name": "A", "nt_resnum": 1750, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1750", "linked_nts": [ "///A/1749", "///A/1751" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -65.792, "beta": -171.998, "gamma": 50.587, "delta": 85.691, "epsilon": 174.570, "zeta": -81.612, "epsilon_zeta": -103.818, "bb_type": "BI", "chi": -159.652, "glyco_bond": "anti", "C5prime_xyz": [ -1.230, 8.722, 0.589 ], "P_xyz": [ 1.221, 9.015, 1.482 ], "form": "A", "ssZp": 4.025, "Dp": 4.136, "splay_angle": 20.288, "splay_distance": 3.195, "splay_ratio": 0.176, "d22": null, "d64": null, "eta": 174.514, "theta": -145.078, "eta_prime": -173.709, "theta_prime": -140.232, "eta_base": -140.335, "theta_base": -122.239, "v0": 1.956, "v1": -21.497, "v2": 31.751, "v3": -31.552, "v4": 18.716, "amplitude": 32.924, "phase_angle": 15.345, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.816, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 223.207, 165.315, 238.090 ], "x_axis": [ 0.023, -0.309, -0.951 ], "y_axis": [ 0.576, -0.773, 0.266 ], "z_axis": [ -0.817, -0.554, 0.160 ], "quaternion": [ -0.320, -0.640, -0.104, 0.691 ] } }, { "index": 1673, "index_chain": 1673, "chain_name": "A", "nt_resnum": 1751, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1751", "linked_nts": [ "///A/1750", "///A/1752" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart", "alpha": -175.167, "beta": -139.643, "gamma": 152.519, "delta": 146.441, "epsilon": -117.249, "zeta": -35.390, "epsilon_zeta": -81.859, "bb_type": "--", "chi": -146.949, "glyco_bond": "anti", "C5prime_xyz": [ -2.014, 8.738, 0.225 ], "P_xyz": [ 0.551, 9.114, -0.105 ], "form": ".", "ssZp": 1.180, "Dp": 1.338, "splay_angle": 127.659, "splay_distance": 16.499, "splay_ratio": 0.898, "d22": null, "d64": null, "eta": -165.050, "theta": -41.362, "eta_prime": -138.100, "theta_prime": -65.305, "eta_base": -118.203, "theta_base": -34.235, "v0": -23.657, "v1": 37.450, "v2": -36.160, "v3": 23.437, "v4": -0.080, "amplitude": 38.167, "phase_angle": 161.336, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.089, "filter_rmsd": 0.100, "frame": { "rmsd": 0.006, "origin": [ 220.090, 164.670, 238.364 ], "x_axis": [ 0.376, -0.594, -0.711 ], "y_axis": [ 0.380, -0.601, 0.703 ], "z_axis": [ -0.845, -0.535, -0.001 ], "quaternion": [ 0.440, 0.703, -0.076, -0.553 ] } }, { "index": 1674, "index_chain": 1674, "chain_name": "A", "nt_resnum": 1752, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1752", "linked_nts": [ "///A/1751", "///A/1753" ], "nt_type": "RNA", "dbn": "(", "summary": "~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -90.592, "beta": -152.073, "gamma": 55.019, "delta": 83.283, "epsilon": -129.028, "zeta": -83.707, "epsilon_zeta": -45.321, "bb_type": "--", "chi": 173.230, "glyco_bond": "--", "C5prime_xyz": [ -1.262, 8.163, 2.049 ], "P_xyz": [ 0.846, 7.767, 3.560 ], "form": "A", "ssZp": 4.733, "Dp": 4.742, "splay_angle": 22.270, "splay_distance": 3.385, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 159.922, "theta": -138.394, "eta_prime": -157.893, "theta_prime": -131.039, "eta_base": -133.837, "theta_base": -96.748, "v0": 5.791, "v1": -26.624, "v2": 36.205, "v3": -33.863, "v4": 17.723, "amplitude": 36.737, "phase_angle": 9.762, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.186, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 219.892, 155.996, 252.397 ], "x_axis": [ 0.957, -0.004, -0.289 ], "y_axis": [ -0.233, 0.579, -0.782 ], "z_axis": [ 0.170, 0.816, 0.553 ], "quaternion": [ 0.879, -0.454, 0.131, 0.065 ] } }, { "index": 1675, "index_chain": 1675, "chain_name": "A", "nt_resnum": 1753, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1753", "linked_nts": [ "///A/1752", "///A/1754" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper", "alpha": -60.417, "beta": 163.330, "gamma": 55.297, "delta": 83.541, "epsilon": -148.769, "zeta": -75.657, "epsilon_zeta": -73.111, "bb_type": "BI", "chi": -168.710, "glyco_bond": "anti", "C5prime_xyz": [ -1.233, 8.603, 1.055 ], "P_xyz": [ 1.371, 8.725, 1.246 ], "form": "A", "ssZp": 4.554, "Dp": 4.615, "splay_angle": 26.118, "splay_distance": 4.089, "splay_ratio": 0.227, "d22": 4.513, "d64": 4.509, "eta": 165.360, "theta": -144.252, "eta_prime": -177.533, "theta_prime": -144.938, "eta_base": -129.094, "theta_base": -127.771, "v0": 3.123, "v1": -24.387, "v2": 35.146, "v3": -34.345, "v4": 19.699, "amplitude": 36.188, "phase_angle": 13.783, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.709, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 221.589, 157.492, 254.915 ], "x_axis": [ 0.600, 0.395, -0.696 ], "y_axis": [ -0.776, 0.499, -0.386 ], "z_axis": [ 0.195, 0.771, 0.606 ], "quaternion": [ 0.822, -0.352, 0.271, 0.356 ] } }, { "index": 1676, "index_chain": 1676, "chain_name": "A", "nt_resnum": 1754, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1754", "linked_nts": [ "///A/1753", "///A/1755" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,ribose-zipper", "alpha": -70.960, "beta": 178.362, "gamma": 56.428, "delta": 82.758, "epsilon": -154.977, "zeta": -71.343, "epsilon_zeta": -83.634, "bb_type": "BI", "chi": -170.596, "glyco_bond": "anti", "C5prime_xyz": [ -1.460, 8.615, 1.150 ], "P_xyz": [ 1.040, 8.977, 1.825 ], "form": "A", "ssZp": 4.481, "Dp": 4.519, "splay_angle": 22.156, "splay_distance": 3.493, "splay_ratio": 0.194, "d22": 4.599, "d64": 4.436, "eta": 168.264, "theta": -147.367, "eta_prime": 179.769, "theta_prime": -146.535, "eta_base": -148.044, "theta_base": -121.817, "v0": 0.726, "v1": -22.286, "v2": 34.150, "v3": -34.676, "v4": 21.429, "amplitude": 35.803, "phase_angle": 17.478, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.943, "filter_rmsd": 0.103, "frame": { "rmsd": 0.006, "origin": [ 223.756, 159.508, 257.737 ], "x_axis": [ 0.088, 0.375, -0.923 ], "y_axis": [ -0.984, 0.175, -0.023 ], "z_axis": [ 0.153, 0.911, 0.384 ], "quaternion": [ 0.642, -0.364, 0.419, 0.529 ] } }, { "index": 1677, "index_chain": 1677, "chain_name": "A", "nt_resnum": 1755, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1755", "linked_nts": [ "///A/1754", "///A/1756" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -70.478, "beta": -179.109, "gamma": 53.587, "delta": 82.178, "epsilon": -152.926, "zeta": -69.336, "epsilon_zeta": -83.590, "bb_type": "BI", "chi": -161.849, "glyco_bond": "anti", "C5prime_xyz": [ -1.173, 8.756, 0.647 ], "P_xyz": [ 1.372, 9.074, 1.172 ], "form": "A", "ssZp": 4.398, "Dp": 4.556, "splay_angle": 18.082, "splay_distance": 2.933, "splay_ratio": 0.159, "d22": 4.066, "d64": 3.991, "eta": 168.453, "theta": -144.528, "eta_prime": 179.906, "theta_prime": -144.029, "eta_base": -142.522, "theta_base": -119.517, "v0": 1.435, "v1": -23.111, "v2": 34.787, "v3": -34.874, "v4": 21.124, "amplitude": 36.257, "phase_angle": 16.372, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.938, "filter_rmsd": 0.064, "frame": { "rmsd": 0.006, "origin": [ 225.916, 162.096, 258.653 ], "x_axis": [ -0.497, 0.349, -0.794 ], "y_axis": [ -0.854, -0.032, 0.520 ], "z_axis": [ 0.156, 0.937, 0.314 ], "quaternion": [ 0.443, -0.235, 0.536, 0.679 ] } }, { "index": 1678, "index_chain": 1678, "chain_name": "A", "nt_resnum": 1756, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1756", "linked_nts": [ "///A/1755", "///A/1757" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -63.900, "beta": 168.217, "gamma": 54.953, "delta": 80.415, "epsilon": -142.553, "zeta": 17.816, "epsilon_zeta": 199.631, "bb_type": "--", "chi": -157.999, "glyco_bond": "anti", "C5prime_xyz": [ -1.506, 8.814, 0.377 ], "P_xyz": [ 1.044, 9.383, 0.422 ], "form": ".", "ssZp": 4.289, "Dp": 4.600, "splay_angle": 24.147, "splay_distance": 4.088, "splay_ratio": 0.256, "d22": null, "d64": null, "eta": 168.204, "theta": -32.731, "eta_prime": -177.219, "theta_prime": -64.261, "eta_base": -138.348, "theta_base": -161.299, "v0": -1.025, "v1": -21.689, "v2": 34.863, "v3": -36.411, "v4": 23.629, "amplitude": 37.137, "phase_angle": 20.152, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.970, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 227.123, 164.747, 258.309 ], "x_axis": [ -0.858, 0.269, -0.438 ], "y_axis": [ -0.468, -0.054, 0.882 ], "z_axis": [ 0.214, 0.962, 0.172 ], "quaternion": [ 0.255, -0.078, 0.639, 0.722 ] } }, { "index": 1679, "index_chain": 1679, "chain_name": "A", "nt_resnum": 1757, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1757", "linked_nts": [ "///A/1756", "///A/1758" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor,phosphate,splayed-apart", "alpha": 173.116, "beta": -166.579, "gamma": 25.394, "delta": 146.887, "epsilon": -64.140, "zeta": 99.268, "epsilon_zeta": 196.593, "bb_type": "--", "chi": 56.114, "glyco_bond": "syn", "C5prime_xyz": [ -5.407, 3.925, 1.047 ], "P_xyz": [ -6.510, 1.899, -0.192 ], "form": ".", "ssZp": 0.015, "Dp": 0.078, "splay_angle": 137.152, "splay_distance": 17.919, "splay_ratio": 0.931, "d22": null, "d64": null, "eta": 70.787, "theta": 155.806, "eta_prime": 121.866, "theta_prime": 114.728, "eta_base": 65.240, "theta_base": 98.099, "v0": -23.465, "v1": 37.497, "v2": -36.397, "v3": 23.817, "v4": -0.462, "amplitude": 38.299, "phase_angle": 161.868, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 229.059, 167.543, 260.578 ], "x_axis": [ 0.040, 0.029, -0.999 ], "y_axis": [ -0.961, 0.273, -0.030 ], "z_axis": [ 0.272, 0.962, 0.038 ], "quaternion": [ 0.581, -0.427, 0.547, 0.426 ] } }, { "index": 1680, "index_chain": 1680, "chain_name": "A", "nt_resnum": 1758, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1758", "linked_nts": [ "///A/1757", "///A/1759" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart", "alpha": 43.222, "beta": 177.783, "gamma": 56.278, "delta": 145.042, "epsilon": -136.211, "zeta": 30.864, "epsilon_zeta": 192.926, "bb_type": "--", "chi": -111.264, "glyco_bond": "anti", "C5prime_xyz": [ -2.040, 8.327, -1.672 ], "P_xyz": [ 0.428, 9.185, -1.484 ], "form": ".", "ssZp": 1.680, "Dp": 1.754, "splay_angle": 154.420, "splay_distance": 17.557, "splay_ratio": 0.976, "d22": 10.342, "d64": 13.195, "eta": -16.274, "theta": 16.574, "eta_prime": -12.746, "theta_prime": -4.385, "eta_base": 15.116, "theta_base": 111.685, "v0": -21.436, "v1": 34.792, "v2": -34.215, "v3": 22.721, "v4": -0.980, "amplitude": 35.810, "phase_angle": 162.834, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.175, "filter_rmsd": 0.102, "frame": { "rmsd": 0.003, "origin": [ 217.154, 177.123, 269.937 ], "x_axis": [ -0.124, -0.530, 0.839 ], "y_axis": [ 0.574, -0.728, -0.375 ], "z_axis": [ 0.809, 0.435, 0.394 ], "quaternion": [ -0.368, 0.550, 0.020, 0.749 ] } }, { "index": 1681, "index_chain": 1681, "chain_name": "A", "nt_resnum": 1759, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1759", "linked_nts": [ "///A/1758", "///A/1760" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-donor,phosphate,splayed-apart", "alpha": -102.063, "beta": -116.949, "gamma": 66.489, "delta": 81.825, "epsilon": -145.767, "zeta": -84.487, "epsilon_zeta": -61.279, "bb_type": "BI", "chi": -176.566, "glyco_bond": "anti", "C5prime_xyz": [ -1.121, 8.326, 1.523 ], "P_xyz": [ 1.008, 7.420, 2.781 ], "form": "A", "ssZp": 4.733, "Dp": 4.715, "splay_angle": 22.314, "splay_distance": 3.410, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": -153.780, "theta": -143.109, "eta_prime": -122.736, "theta_prime": -140.161, "eta_base": 142.327, "theta_base": -130.749, "v0": 6.408, "v1": -27.891, "v2": 37.719, "v3": -35.037, "v4": 18.036, "amplitude": 38.209, "phase_angle": 9.186, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.107, "frame": { "rmsd": 0.006, "origin": [ 226.564, 174.192, 255.407 ], "x_axis": [ -0.941, 0.256, -0.221 ], "y_axis": [ -0.294, -0.297, 0.908 ], "z_axis": [ 0.167, 0.920, 0.355 ], "quaternion": [ 0.171, -0.017, 0.568, 0.805 ] } }, { "index": 1682, "index_chain": 1682, "chain_name": "A", "nt_resnum": 1760, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1760", "linked_nts": [ "///A/1759", "///A/1761" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -46.878, "beta": 172.754, "gamma": 37.511, "delta": 80.546, "epsilon": -118.225, "zeta": -67.939, "epsilon_zeta": -50.286, "bb_type": "--", "chi": -166.105, "glyco_bond": "anti", "C5prime_xyz": [ -1.111, 8.552, 0.924 ], "P_xyz": [ 1.389, 8.715, 1.660 ], "form": ".", "ssZp": 4.473, "Dp": 4.788, "splay_angle": 42.318, "splay_distance": 6.544, "splay_ratio": 0.361, "d22": null, "d64": null, "eta": 177.492, "theta": -115.304, "eta_prime": -177.839, "theta_prime": -102.637, "eta_base": -159.356, "theta_base": -63.911, "v0": 5.405, "v1": -27.478, "v2": 38.052, "v3": -35.945, "v4": 19.247, "amplitude": 38.736, "phase_angle": 10.785, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.436, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 228.092, 177.082, 254.436 ], "x_axis": [ -0.982, -0.015, 0.189 ], "y_axis": [ 0.184, -0.309, 0.933 ], "z_axis": [ 0.044, 0.951, 0.306 ], "quaternion": [ -0.062, 0.072, 0.584, 0.806 ] } }, { "index": 1683, "index_chain": 1683, "chain_name": "A", "nt_resnum": 1761, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1761", "linked_nts": [ "///A/1760", "///A/1762" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -47.338, "beta": 143.024, "gamma": 74.223, "delta": 79.649, "epsilon": -150.720, "zeta": -76.321, "epsilon_zeta": -74.399, "bb_type": "BI", "chi": -175.311, "glyco_bond": "anti", "C5prime_xyz": [ -1.527, 8.615, 1.399 ], "P_xyz": [ 0.997, 9.071, 0.896 ], "form": "A", "ssZp": 4.555, "Dp": 4.577, "splay_angle": 21.452, "splay_distance": 3.750, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 170.820, "theta": -120.606, "eta_prime": -150.604, "theta_prime": -137.597, "eta_base": -83.633, "theta_base": -118.389, "v0": 0.089, "v1": -22.876, "v2": 35.766, "v3": -36.696, "v4": 23.080, "amplitude": 37.713, "phase_angle": 18.491, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.477, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 223.776, 180.148, 258.283 ], "x_axis": [ -0.348, -0.249, 0.904 ], "y_axis": [ 0.933, -0.183, 0.309 ], "z_axis": [ 0.089, 0.951, 0.296 ], "quaternion": [ -0.437, 0.367, 0.466, 0.676 ] } }, { "index": 1684, "index_chain": 1684, "chain_name": "A", "nt_resnum": 1762, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1762", "linked_nts": [ "///A/1761", "///A/1763" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 163.568, "beta": -168.740, "gamma": 164.961, "delta": 82.471, "epsilon": -130.356, "zeta": -85.251, "epsilon_zeta": -45.105, "bb_type": "BI", "chi": -178.353, "glyco_bond": "anti", "C5prime_xyz": [ -1.289, 8.373, 1.608 ], "P_xyz": [ 0.506, 10.017, 0.665 ], "form": "A", "ssZp": 4.721, "Dp": 4.737, "splay_angle": 25.459, "splay_distance": 4.056, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 154.385, "theta": -162.109, "eta_prime": 171.068, "theta_prime": -157.943, "eta_base": -144.578, "theta_base": -132.283, "v0": 4.878, "v1": -25.913, "v2": 36.026, "v3": -34.249, "v4": 18.533, "amplitude": 36.728, "phase_angle": 11.218, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.589, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 221.510, 182.791, 259.679 ], "x_axis": [ 0.228, -0.397, 0.889 ], "y_axis": [ 0.974, 0.101, -0.205 ], "z_axis": [ -0.008, 0.912, 0.409 ], "quaternion": [ 0.659, -0.424, -0.340, -0.520 ] } }, { "index": 1685, "index_chain": 1685, "chain_name": "A", "nt_resnum": 1763, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1763", "linked_nts": [ "///A/1762", "///A/1764" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -44.172, "beta": 163.730, "gamma": 42.035, "delta": 79.124, "epsilon": -137.175, "zeta": -75.300, "epsilon_zeta": -61.875, "bb_type": "BI", "chi": -170.392, "glyco_bond": "anti", "C5prime_xyz": [ -1.694, 8.693, 1.112 ], "P_xyz": [ 0.767, 9.231, 1.790 ], "form": "A", "ssZp": 4.577, "Dp": 4.658, "splay_angle": 24.361, "splay_distance": 3.832, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 170.286, "theta": -138.544, "eta_prime": -176.703, "theta_prime": -134.592, "eta_base": -140.696, "theta_base": -88.074, "v0": -0.520, "v1": -22.622, "v2": 35.865, "v3": -37.177, "v4": 23.766, "amplitude": 38.020, "phase_angle": 19.386, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.446, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 219.762, 185.385, 262.261 ], "x_axis": [ 0.699, -0.426, 0.574 ], "y_axis": [ 0.703, 0.261, -0.662 ], "z_axis": [ 0.132, 0.866, 0.482 ], "quaternion": [ 0.781, -0.489, -0.141, -0.361 ] } }, { "index": 1686, "index_chain": 1686, "chain_name": "A", "nt_resnum": 1764, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1764", "linked_nts": [ "///A/1763", "///A/1765" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -54.620, "beta": 160.025, "gamma": 51.400, "delta": 79.918, "epsilon": -134.980, "zeta": -72.004, "epsilon_zeta": -62.976, "bb_type": "BI", "chi": -167.436, "glyco_bond": "anti", "C5prime_xyz": [ -1.555, 8.680, 0.956 ], "P_xyz": [ 1.011, 9.098, 1.166 ], "form": "A", "ssZp": 4.545, "Dp": 4.684, "splay_angle": 21.574, "splay_distance": 3.436, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 166.188, "theta": -136.740, "eta_prime": -175.667, "theta_prime": -138.841, "eta_base": -112.599, "theta_base": -101.602, "v0": 0.799, "v1": -23.715, "v2": 36.325, "v3": -36.832, "v4": 22.744, "amplitude": 38.070, "phase_angle": 17.412, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.810, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 221.564, 186.913, 265.277 ], "x_axis": [ 0.977, -0.188, -0.105 ], "y_axis": [ 0.011, 0.531, -0.847 ], "z_axis": [ 0.215, 0.826, 0.521 ], "quaternion": [ 0.870, -0.481, 0.092, -0.057 ] } }, { "index": 1687, "index_chain": 1687, "chain_name": "A", "nt_resnum": 1765, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1765", "linked_nts": [ "///A/1764", "///A/1766" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": -77.176, "beta": 149.675, "gamma": 73.382, "delta": 76.900, "epsilon": -120.755, "zeta": -62.539, "epsilon_zeta": -58.216, "bb_type": "--", "chi": 178.650, "glyco_bond": "anti", "C5prime_xyz": [ -1.717, 8.437, 1.686 ], "P_xyz": [ 0.732, 9.209, 1.235 ], "form": ".", "ssZp": 4.836, "Dp": 4.817, "splay_angle": 86.669, "splay_distance": 11.654, "splay_ratio": 0.686, "d22": null, "d64": null, "eta": 159.269, "theta": -93.912, "eta_prime": 176.484, "theta_prime": -145.491, "eta_base": -125.035, "theta_base": 156.392, "v0": 1.888, "v1": -25.785, "v2": 38.606, "v3": -38.532, "v4": 23.116, "amplitude": 40.153, "phase_angle": 15.958, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.300, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 223.887, 188.525, 267.230 ], "x_axis": [ 0.765, 0.096, -0.636 ], "y_axis": [ -0.561, 0.585, -0.586 ], "z_axis": [ 0.316, 0.805, 0.502 ], "quaternion": [ 0.844, -0.412, 0.282, 0.194 ] } }, { "index": 1688, "index_chain": 1688, "chain_name": "A", "nt_resnum": 1766, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1766", "linked_nts": [ "///A/1765", "///A/1767" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 158.338, "beta": 146.537, "gamma": 42.287, "delta": 84.806, "epsilon": -162.611, "zeta": -81.803, "epsilon_zeta": -80.809, "bb_type": "BI", "chi": -164.672, "glyco_bond": "anti", "C5prime_xyz": [ -1.042, 8.595, 0.849 ], "P_xyz": [ 1.562, 8.308, 1.006 ], "form": ".", "ssZp": 4.422, "Dp": 4.500, "splay_angle": 29.508, "splay_distance": 4.491, "splay_ratio": 0.255, "d22": null, "d64": null, "eta": -18.190, "theta": -110.324, "eta_prime": 25.939, "theta_prime": -115.890, "eta_base": 17.360, "theta_base": -69.056, "v0": 4.976, "v1": -25.082, "v2": 34.589, "v3": -32.699, "v4": 17.491, "amplitude": 35.202, "phase_angle": 10.710, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.622, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 217.684, 193.444, 275.783 ], "x_axis": [ -0.914, 0.151, -0.375 ], "y_axis": [ 0.405, 0.369, -0.837 ], "z_axis": [ 0.012, -0.917, -0.398 ], "quaternion": [ 0.118, 0.170, 0.819, -0.536 ] } }, { "index": 1689, "index_chain": 1689, "chain_name": "A", "nt_resnum": 1767, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1767", "linked_nts": [ "///A/1766", "///A/1768" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": 160.410, "beta": -123.104, "gamma": 149.055, "delta": 81.242, "epsilon": -112.117, "zeta": -92.976, "epsilon_zeta": -19.141, "bb_type": "--", "chi": 177.902, "glyco_bond": "anti", "C5prime_xyz": [ -1.591, 8.364, 1.784 ], "P_xyz": [ 0.787, 8.827, 0.802 ], "form": ".", "ssZp": 4.671, "Dp": 4.705, "splay_angle": 34.199, "splay_distance": 5.057, "splay_ratio": 0.296, "d22": null, "d64": null, "eta": 159.318, "theta": -128.469, "eta_prime": -170.881, "theta_prime": -129.166, "eta_base": -93.593, "theta_base": -74.885, "v0": 1.847, "v1": -23.711, "v2": 35.361, "v3": -35.275, "v4": 21.057, "amplitude": 36.748, "phase_angle": 15.790, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.041, "frame": { "rmsd": 0.005, "origin": [ 215.103, 191.491, 272.669 ], "x_axis": [ -0.238, 0.370, -0.898 ], "y_axis": [ 0.970, 0.042, -0.240 ], "z_axis": [ -0.051, -0.928, -0.369 ], "quaternion": [ 0.330, 0.522, 0.642, -0.455 ] } }, { "index": 1690, "index_chain": 1690, "chain_name": "A", "nt_resnum": 1768, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1768", "linked_nts": [ "///A/1767", "///A/1769" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate", "alpha": -36.746, "beta": 141.817, "gamma": 41.741, "delta": 81.638, "epsilon": -125.632, "zeta": -62.321, "epsilon_zeta": -63.311, "bb_type": "--", "chi": -167.756, "glyco_bond": "anti", "C5prime_xyz": [ -0.970, 8.448, 0.993 ], "P_xyz": [ 1.617, 8.029, 0.902 ], "form": ".", "ssZp": 4.589, "Dp": 4.807, "splay_angle": 28.708, "splay_distance": 4.581, "splay_ratio": 0.252, "d22": null, "d64": null, "eta": 160.889, "theta": -111.270, "eta_prime": -175.534, "theta_prime": -109.933, "eta_base": -96.736, "theta_base": -74.899, "v0": 7.695, "v1": -29.010, "v2": 38.255, "v3": -34.831, "v4": 17.111, "amplitude": 38.574, "phase_angle": 7.373, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.295, "filter_rmsd": 0.039, "frame": { "rmsd": 0.009, "origin": [ 215.884, 189.300, 268.178 ], "x_axis": [ 0.774, 0.194, -0.603 ], "y_axis": [ 0.630, -0.330, 0.703 ], "z_axis": [ -0.062, -0.924, -0.377 ], "quaternion": [ 0.516, 0.788, 0.262, -0.211 ] } }, { "index": 1691, "index_chain": 1691, "chain_name": "A", "nt_resnum": 1769, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1769", "linked_nts": [ "///A/1768", "///A/1770" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -65.634, "beta": 151.926, "gamma": 75.569, "delta": 77.862, "epsilon": -147.131, "zeta": -83.388, "epsilon_zeta": -63.744, "bb_type": "BI", "chi": -175.169, "glyco_bond": "anti", "C5prime_xyz": [ -1.851, 8.635, 1.329 ], "P_xyz": [ 0.586, 9.451, 0.878 ], "form": "A", "ssZp": 4.647, "Dp": 4.642, "splay_angle": 25.124, "splay_distance": 3.840, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 163.198, "theta": -151.925, "eta_prime": -165.343, "theta_prime": -153.136, "eta_base": -96.656, "theta_base": -119.005, "v0": -1.058, "v1": -22.851, "v2": 36.692, "v3": -38.292, "v4": 24.825, "amplitude": 39.071, "phase_angle": 20.100, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.212, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 218.643, 187.674, 264.903 ], "x_axis": [ 0.995, -0.051, 0.085 ], "y_axis": [ -0.099, -0.484, 0.870 ], "z_axis": [ -0.003, -0.874, -0.486 ], "quaternion": [ 0.506, 0.861, -0.044, 0.024 ] } }, { "index": 1692, "index_chain": 1692, "chain_name": "A", "nt_resnum": 1770, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1770", "linked_nts": [ "///A/1769", "///A/1771" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -43.756, "beta": 164.161, "gamma": 45.195, "delta": 82.066, "epsilon": -164.889, "zeta": -84.664, "epsilon_zeta": -80.225, "bb_type": "BI", "chi": -169.022, "glyco_bond": "anti", "C5prime_xyz": [ -1.263, 8.640, 1.099 ], "P_xyz": [ 1.276, 8.736, 1.735 ], "form": "A", "ssZp": 4.407, "Dp": 4.460, "splay_angle": 22.217, "splay_distance": 3.651, "splay_ratio": 0.199, "d22": 4.412, "d64": 4.665, "eta": 172.597, "theta": -132.165, "eta_prime": -172.499, "theta_prime": -138.930, "eta_base": -121.448, "theta_base": -120.873, "v0": 2.514, "v1": -24.034, "v2": 35.306, "v3": -34.840, "v4": 20.397, "amplitude": 36.516, "phase_angle": 14.790, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.540, "filter_rmsd": 0.066, "frame": { "rmsd": 0.006, "origin": [ 219.976, 185.276, 262.214 ], "x_axis": [ 0.696, -0.314, 0.645 ], "y_axis": [ -0.718, -0.293, 0.632 ], "z_axis": [ -0.010, -0.903, -0.430 ], "quaternion": [ 0.493, 0.778, -0.332, 0.204 ] } }, { "index": 1693, "index_chain": 1693, "chain_name": "A", "nt_resnum": 1771, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1771", "linked_nts": [ "///A/1770", "///A/1772" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 169.795, "beta": -148.157, "gamma": 158.392, "delta": 81.555, "epsilon": -132.281, "zeta": -82.647, "epsilon_zeta": -49.633, "bb_type": "BI", "chi": 177.326, "glyco_bond": "anti", "C5prime_xyz": [ -1.508, 8.441, 1.809 ], "P_xyz": [ 0.741, 9.546, 1.113 ], "form": "A", "ssZp": 4.529, "Dp": 4.592, "splay_angle": 22.968, "splay_distance": 3.727, "splay_ratio": 0.203, "d22": 4.656, "d64": 4.662, "eta": 164.296, "theta": -151.773, "eta_prime": 179.779, "theta_prime": -151.784, "eta_base": -142.895, "theta_base": -129.869, "v0": -0.067, "v1": -21.872, "v2": 34.343, "v3": -35.368, "v4": 22.319, "amplitude": 36.268, "phase_angle": 18.752, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.263, "filter_rmsd": 0.065, "frame": { "rmsd": 0.006, "origin": [ 221.724, 183.043, 259.915 ], "x_axis": [ 0.244, -0.361, 0.900 ], "y_axis": [ -0.969, -0.131, 0.210 ], "z_axis": [ 0.042, -0.923, -0.381 ], "quaternion": [ 0.428, 0.663, -0.502, 0.356 ] } }, { "index": 1694, "index_chain": 1694, "chain_name": "A", "nt_resnum": 1772, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1772", "linked_nts": [ "///A/1771", "///A/1773" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -44.331, "beta": 172.005, "gamma": 35.038, "delta": 82.349, "epsilon": -173.531, "zeta": -78.014, "epsilon_zeta": -95.517, "bb_type": "BI", "chi": -158.518, "glyco_bond": "anti", "C5prime_xyz": [ -1.410, 8.823, 0.428 ], "P_xyz": [ 0.995, 9.419, 1.241 ], "form": ".", "ssZp": 4.178, "Dp": 4.297, "splay_angle": 27.094, "splay_distance": 4.250, "splay_ratio": 0.234, "d22": null, "d64": null, "eta": 166.382, "theta": -129.874, "eta_prime": -177.905, "theta_prime": -130.649, "eta_base": -141.261, "theta_base": -80.735, "v0": -2.068, "v1": -19.434, "v2": 32.273, "v3": -34.423, "v4": 23.014, "amplitude": 34.800, "phase_angle": 21.971, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.307, "filter_rmsd": 0.059, "frame": { "rmsd": 0.008, "origin": [ 223.849, 180.270, 258.615 ], "x_axis": [ -0.332, -0.303, 0.893 ], "y_axis": [ -0.942, 0.067, -0.328 ], "z_axis": [ 0.039, -0.951, -0.308 ], "quaternion": [ -0.327, -0.477, 0.653, -0.489 ] } }, { "index": 1695, "index_chain": 1695, "chain_name": "A", "nt_resnum": 1773, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1773", "linked_nts": [ "///A/1772", "///A/1774" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 168.365, "beta": -131.415, "gamma": 142.134, "delta": 79.102, "epsilon": -106.545, "zeta": -117.329, "epsilon_zeta": 10.784, "bb_type": "--", "chi": -175.065, "glyco_bond": "anti", "C5prime_xyz": [ -1.533, 8.567, 1.395 ], "P_xyz": [ 0.814, 9.053, 0.383 ], "form": ".", "ssZp": 4.591, "Dp": 4.744, "splay_angle": 65.792, "splay_distance": 10.987, "splay_ratio": 0.549, "d22": null, "d64": null, "eta": 162.442, "theta": -168.861, "eta_prime": -175.572, "theta_prime": 168.885, "eta_base": -108.281, "theta_base": 158.200, "v0": 1.175, "v1": -23.883, "v2": 36.320, "v3": -36.677, "v4": 22.384, "amplitude": 37.963, "phase_angle": 16.919, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 222.716, 176.310, 259.661 ], "x_axis": [ -0.917, -0.159, 0.365 ], "y_axis": [ -0.394, 0.226, -0.891 ], "z_axis": [ 0.059, -0.961, -0.270 ], "quaternion": [ -0.098, -0.178, 0.777, -0.596 ] } }, { "index": 1696, "index_chain": 1696, "chain_name": "A", "nt_resnum": 1774, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1774", "linked_nts": [ "///A/1773", "///A/1775" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 17.698, "beta": -88.331, "gamma": -86.862, "delta": 84.233, "epsilon": 162.668, "zeta": 28.877, "epsilon_zeta": 133.791, "bb_type": "--", "chi": -177.607, "glyco_bond": "anti", "C5prime_xyz": [ -0.979, 8.179, 1.618 ], "P_xyz": [ -1.702, 10.668, 1.786 ], "form": ".", "ssZp": 4.095, "Dp": 4.213, "splay_angle": 38.529, "splay_distance": 5.947, "splay_ratio": 0.334, "d22": null, "d64": null, "eta": -141.998, "theta": -156.966, "eta_prime": -166.588, "theta_prime": -133.851, "eta_base": 178.111, "theta_base": -57.841, "v0": 9.407, "v1": -28.371, "v2": 35.476, "v3": -31.154, "v4": 13.837, "amplitude": 35.553, "phase_angle": 3.780, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.011, "origin": [ 232.353, 172.411, 256.103 ], "x_axis": [ -0.355, -0.362, 0.862 ], "y_axis": [ -0.929, 0.243, -0.281 ], "z_axis": [ -0.108, -0.900, -0.422 ], "quaternion": [ -0.341, -0.454, 0.711, -0.415 ] } }, { "index": 1697, "index_chain": 1697, "chain_name": "A", "nt_resnum": 1775, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1775", "linked_nts": [ "///A/1774", "///A/1776" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -138.524, "beta": 174.337, "gamma": 61.737, "delta": 81.237, "epsilon": -169.124, "zeta": -98.644, "epsilon_zeta": -70.479, "bb_type": "BI", "chi": -161.071, "glyco_bond": "anti", "C5prime_xyz": [ -1.531, 8.760, 0.569 ], "P_xyz": [ 1.014, 9.311, 0.597 ], "form": "A", "ssZp": 4.384, "Dp": 4.452, "splay_angle": 24.840, "splay_distance": 4.005, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 130.834, "theta": -143.582, "eta_prime": 178.467, "theta_prime": -151.673, "eta_base": -82.978, "theta_base": -135.828, "v0": 0.106, "v1": -22.287, "v2": 34.709, "v3": -35.657, "v4": 22.458, "amplitude": 36.598, "phase_angle": 18.490, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 227.808, 169.020, 257.894 ], "x_axis": [ -0.983, 0.166, -0.082 ], "y_axis": [ 0.134, 0.335, -0.933 ], "z_axis": [ -0.127, -0.928, -0.352 ], "quaternion": [ -0.014, 0.092, 0.817, -0.569 ] } }, { "index": 1698, "index_chain": 1698, "chain_name": "A", "nt_resnum": 1776, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1776", "linked_nts": [ "///A/1775", "///A/1777" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 147.301, "beta": -130.282, "gamma": 172.623, "delta": 80.607, "epsilon": -103.424, "zeta": -149.921, "epsilon_zeta": 46.498, "bb_type": "--", "chi": 166.333, "glyco_bond": "anti", "C5prime_xyz": [ -1.722, 7.969, 2.355 ], "P_xyz": [ 0.279, 9.406, 1.477 ], "form": "A", "ssZp": 4.739, "Dp": 4.751, "splay_angle": 24.453, "splay_distance": 3.695, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 173.612, "theta": -158.516, "eta_prime": -176.079, "theta_prime": -160.812, "eta_base": -142.566, "theta_base": -136.928, "v0": 3.929, "v1": -26.250, "v2": 37.435, "v3": -36.175, "v4": 20.321, "amplitude": 38.399, "phase_angle": 12.867, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.246, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 227.020, 165.136, 258.476 ], "x_axis": [ -0.857, 0.267, -0.440 ], "y_axis": [ 0.508, 0.304, -0.806 ], "z_axis": [ -0.082, -0.915, -0.396 ], "quaternion": [ 0.112, 0.243, 0.800, -0.538 ] } }, { "index": 1699, "index_chain": 1699, "chain_name": "A", "nt_resnum": 1777, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1777", "linked_nts": [ "///A/1776", "///A/1778" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 106.409, "beta": -92.649, "gamma": 173.720, "delta": 81.661, "epsilon": -91.676, "zeta": -133.396, "epsilon_zeta": 41.719, "bb_type": "--", "chi": 154.792, "glyco_bond": "anti", "C5prime_xyz": [ -1.829, 7.637, 2.824 ], "P_xyz": [ 0.279, 8.702, 1.712 ], "form": "A", "ssZp": 4.525, "Dp": 4.686, "splay_angle": 21.821, "splay_distance": 3.491, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 169.955, "theta": -126.108, "eta_prime": -178.037, "theta_prime": -138.419, "eta_base": -141.270, "theta_base": -112.751, "v0": 4.250, "v1": -25.879, "v2": 36.571, "v3": -35.116, "v4": 19.431, "amplitude": 37.422, "phase_angle": 12.240, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.020, "frame": { "rmsd": 0.020, "origin": [ 225.773, 161.670, 258.772 ], "x_axis": [ -0.522, 0.401, -0.753 ], "y_axis": [ 0.849, 0.157, -0.504 ], "z_axis": [ -0.084, -0.902, -0.423 ], "quaternion": [ 0.231, 0.431, 0.725, -0.485 ] } }, { "index": 1700, "index_chain": 1700, "chain_name": "A", "nt_resnum": 1778, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1778", "linked_nts": [ "///A/1777", "///A/1779" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": 116.170, "beta": -104.778, "gamma": 178.205, "delta": 81.399, "epsilon": -107.427, "zeta": -31.841, "epsilon_zeta": -75.586, "bb_type": "--", "chi": 163.062, "glyco_bond": "anti", "C5prime_xyz": [ -2.109, 8.051, 2.399 ], "P_xyz": [ -0.061, 9.286, 1.353 ], "form": "A", "ssZp": 4.375, "Dp": 4.539, "splay_angle": 20.450, "splay_distance": 3.593, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 154.664, "theta": -110.659, "eta_prime": 177.830, "theta_prime": -139.217, "eta_base": -131.631, "theta_base": -119.333, "v0": -2.125, "v1": -20.283, "v2": 33.666, "v3": -35.859, "v4": 23.939, "amplitude": 36.283, "phase_angle": 21.894, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.044, "frame": { "rmsd": 0.012, "origin": [ 223.582, 159.253, 257.529 ], "x_axis": [ 0.092, 0.472, -0.877 ], "y_axis": [ 0.990, -0.139, 0.029 ], "z_axis": [ -0.108, -0.870, -0.480 ], "quaternion": [ 0.344, 0.654, 0.559, -0.376 ] } }, { "index": 1701, "index_chain": 1701, "chain_name": "A", "nt_resnum": 1779, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1779", "linked_nts": [ "///A/1778", "///A/1780" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -137.612, "beta": 89.414, "gamma": 145.026, "delta": 76.145, "epsilon": 68.667, "zeta": 87.733, "epsilon_zeta": -19.066, "bb_type": "--", "chi": 172.314, "glyco_bond": "anti", "C5prime_xyz": [ -1.118, 8.003, 2.068 ], "P_xyz": [ -0.757, 10.066, 0.504 ], "form": "A", "ssZp": 3.627, "Dp": 3.583, "splay_angle": 24.019, "splay_distance": 4.039, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": -168.098, "theta": 179.007, "eta_prime": -174.746, "theta_prime": -160.264, "eta_base": -134.340, "theta_base": -125.236, "v0": 10.679, "v1": -32.196, "v2": 40.659, "v3": -35.564, "v4": 15.742, "amplitude": 40.751, "phase_angle": 3.854, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 221.375, 157.715, 255.147 ], "x_axis": [ 0.604, 0.372, -0.705 ], "y_axis": [ 0.779, -0.459, 0.426 ], "z_axis": [ -0.166, -0.807, -0.567 ], "quaternion": [ 0.380, 0.811, 0.355, -0.268 ] } }, { "index": 1702, "index_chain": 1702, "chain_name": "A", "nt_resnum": 1780, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1780", "linked_nts": [ "///A/1779", "///A/1781" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": 68.854, "beta": -148.779, "gamma": 171.613, "delta": 83.816, "epsilon": -91.230, "zeta": -122.085, "epsilon_zeta": 30.854, "bb_type": "--", "chi": 179.079, "glyco_bond": "anti", "C5prime_xyz": [ -1.485, 8.489, 1.707 ], "P_xyz": [ 0.555, 9.868, 0.867 ], "form": ".", "ssZp": 4.310, "Dp": 4.462, "splay_angle": 23.142, "splay_distance": 4.013, "splay_ratio": 0.204, "d22": 4.528, "d64": 5.128, "eta": 148.362, "theta": -143.779, "eta_prime": 178.103, "theta_prime": -152.190, "eta_base": -136.210, "theta_base": -141.044, "v0": -0.598, "v1": -20.687, "v2": 32.855, "v3": -34.138, "v4": 21.897, "amplitude": 34.869, "phase_angle": 19.570, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.008, "origin": [ 219.939, 155.732, 251.935 ], "x_axis": [ 0.951, 0.027, -0.309 ], "y_axis": [ 0.278, -0.515, 0.811 ], "z_axis": [ -0.137, -0.857, -0.497 ], "quaternion": [ 0.484, 0.861, 0.089, -0.129 ] } }, { "index": 1703, "index_chain": 1703, "chain_name": "A", "nt_resnum": 1781, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1781", "linked_nts": [ "///A/1780", "///A/1782" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,phosphate", "alpha": 77.651, "beta": -110.192, "gamma": -149.795, "delta": 84.347, "epsilon": -88.792, "zeta": -126.248, "epsilon_zeta": 37.455, "bb_type": "--", "chi": 175.423, "glyco_bond": "anti", "C5prime_xyz": [ -1.300, 8.238, 1.950 ], "P_xyz": [ -0.259, 10.189, 0.570 ], "form": ".", "ssZp": 4.577, "Dp": 4.653, "splay_angle": 14.959, "splay_distance": 2.612, "splay_ratio": 0.137, "d22": null, "d64": null, "eta": 167.319, "theta": -158.467, "eta_prime": 175.519, "theta_prime": -162.923, "eta_base": -160.865, "theta_base": -163.291, "v0": 4.933, "v1": -25.748, "v2": 35.687, "v3": -33.777, "v4": 18.167, "amplitude": 36.349, "phase_angle": 10.956, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.007, "origin": [ 218.529, 153.836, 248.691 ], "x_axis": [ 0.995, -0.099, -0.024 ], "y_axis": [ -0.032, -0.523, 0.852 ], "z_axis": [ -0.097, -0.846, -0.524 ], "quaternion": [ 0.487, 0.872, -0.038, -0.034 ] } }, { "index": 1704, "index_chain": 1704, "chain_name": "A", "nt_resnum": 1782, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1782", "linked_nts": [ "///A/1781", "///A/1783" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor", "alpha": 91.534, "beta": -120.213, "gamma": -158.663, "delta": 82.770, "epsilon": -110.359, "zeta": -63.362, "epsilon_zeta": -46.997, "bb_type": "--", "chi": -148.545, "glyco_bond": "anti", "C5prime_xyz": [ -1.081, 8.693, -0.148 ], "P_xyz": [ -0.620, 9.591, -2.553 ], "form": ".", "ssZp": 3.647, "Dp": 4.776, "splay_angle": 73.079, "splay_distance": 11.056, "splay_ratio": 0.596, "d22": null, "d64": null, "eta": 153.956, "theta": -129.445, "eta_prime": 167.660, "theta_prime": -169.492, "eta_base": 176.963, "theta_base": 134.094, "v0": 5.236, "v1": -26.463, "v2": 36.546, "v3": -34.544, "v4": 18.506, "amplitude": 37.199, "phase_angle": 10.748, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 218.003, 153.430, 246.166 ], "x_axis": [ 0.942, -0.329, 0.070 ], "y_axis": [ -0.327, -0.848, 0.418 ], "z_axis": [ -0.078, -0.416, -0.906 ], "quaternion": [ 0.217, 0.961, -0.171, -0.002 ] } }, { "index": 1705, "index_chain": 1705, "chain_name": "A", "nt_resnum": 1783, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1783", "linked_nts": [ "///A/1782", "///A/1784" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,phosphate", "alpha": -161.011, "beta": 151.616, "gamma": 21.576, "delta": 83.791, "epsilon": -162.786, "zeta": -80.489, "epsilon_zeta": -82.298, "bb_type": "BI", "chi": -166.852, "glyco_bond": "anti", "C5prime_xyz": [ -1.279, 8.664, 0.979 ], "P_xyz": [ 1.090, 8.684, 2.089 ], "form": "A", "ssZp": 4.357, "Dp": 4.428, "splay_angle": 21.604, "splay_distance": 3.387, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 12.831, "theta": -122.917, "eta_prime": 45.540, "theta_prime": -129.800, "eta_base": 29.948, "theta_base": -86.262, "v0": 1.404, "v1": -22.277, "v2": 33.453, "v3": -33.626, "v4": 20.323, "amplitude": 34.868, "phase_angle": 16.383, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.007, "origin": [ 208.880, 150.492, 240.654 ], "x_axis": [ -0.755, -0.141, 0.641 ], "y_axis": [ 0.501, -0.755, 0.423 ], "z_axis": [ 0.424, 0.640, 0.641 ], "quaternion": [ -0.181, 0.300, 0.300, 0.887 ] } }, { "index": 1706, "index_chain": 1706, "chain_name": "A", "nt_resnum": 1784, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1784", "linked_nts": [ "///A/1783", "///A/1785" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-donor,phosphate,splayed-apart", "alpha": 165.464, "beta": -143.674, "gamma": 142.844, "delta": 76.200, "epsilon": 35.953, "zeta": 149.175, "epsilon_zeta": -113.222, "bb_type": "--", "chi": 174.966, "glyco_bond": "anti", "C5prime_xyz": [ -1.413, 8.187, 1.921 ], "P_xyz": [ 0.884, 9.043, 1.047 ], "form": ".", "ssZp": 3.505, "Dp": 3.475, "splay_angle": 86.604, "splay_distance": 11.901, "splay_ratio": 0.688, "d22": null, "d64": null, "eta": -169.504, "theta": -114.084, "eta_prime": -160.380, "theta_prime": -101.070, "eta_base": -99.527, "theta_base": -70.166, "v0": 6.453, "v1": -29.840, "v2": 40.806, "v3": -38.119, "v4": 19.906, "amplitude": 41.413, "phase_angle": 9.817, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 208.591, 152.462, 243.393 ], "x_axis": [ -0.235, -0.632, 0.739 ], "y_axis": [ 0.898, -0.433, -0.085 ], "z_axis": [ 0.373, 0.643, 0.669 ], "quaternion": [ 0.500, -0.364, -0.183, -0.764 ] } }, { "index": 1707, "index_chain": 1707, "chain_name": "A", "nt_resnum": 1785, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1785", "linked_nts": [ "///A/1784", "///A/1786" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BII,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,phosphate,splayed-apart", "alpha": -51.119, "beta": 114.178, "gamma": 73.871, "delta": 81.511, "epsilon": -96.893, "zeta": -162.637, "epsilon_zeta": 65.744, "bb_type": "BII", "chi": -108.348, "glyco_bond": "anti", "C5prime_xyz": [ -2.177, 8.106, -2.311 ], "P_xyz": [ -0.809, 6.810, -4.098 ], "form": ".", "ssZp": 0.593, "Dp": 4.534, "splay_angle": 170.751, "splay_distance": 19.771, "splay_ratio": 0.997, "d22": null, "d64": null, "eta": -155.299, "theta": 179.376, "eta_prime": -120.298, "theta_prime": 158.434, "eta_base": -99.947, "theta_base": 106.107, "v0": -2.621, "v1": -19.980, "v2": 33.650, "v3": -36.101, "v4": 24.452, "amplitude": 36.460, "phase_angle": 22.640, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 218.508, 154.621, 249.607 ], "x_axis": [ 0.995, -0.095, -0.023 ], "y_axis": [ 0.027, 0.494, -0.869 ], "z_axis": [ 0.093, 0.864, 0.494 ], "quaternion": [ 0.864, -0.502, 0.034, -0.035 ] } }, { "index": 1708, "index_chain": 1708, "chain_name": "A", "nt_resnum": 1786, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1786", "linked_nts": [ "///A/1785", "///A/1787" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": 40.958, "beta": -172.586, "gamma": 71.689, "delta": 81.675, "epsilon": -165.666, "zeta": 53.405, "epsilon_zeta": 140.929, "bb_type": "--", "chi": -157.045, "glyco_bond": "anti", "C5prime_xyz": [ -1.555, 8.763, 0.325 ], "P_xyz": [ 0.975, 9.362, 0.280 ], "form": ".", "ssZp": 4.309, "Dp": 4.466, "splay_angle": 147.157, "splay_distance": 16.418, "splay_ratio": 0.959, "d22": null, "d64": null, "eta": -35.155, "theta": -6.232, "eta_prime": -29.951, "theta_prime": -28.396, "eta_base": 16.992, "theta_base": -21.342, "v0": -0.013, "v1": -22.339, "v2": 34.861, "v3": -35.876, "v4": 22.653, "amplitude": 36.793, "phase_angle": 18.646, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3d", "suiteness": 0.268, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 214.456, 165.766, 233.787 ], "x_axis": [ 0.167, -0.824, -0.542 ], "y_axis": [ 0.295, -0.482, 0.825 ], "z_axis": [ -0.941, -0.298, 0.163 ], "quaternion": [ 0.460, 0.610, -0.217, -0.608 ] } }, { "index": 1709, "index_chain": 1709, "chain_name": "A", "nt_resnum": 1787, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1787", "linked_nts": [ "///A/1786", "///A/1788" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-stack,non-pair-contact,junction-loop,cap-acceptor,splayed-apart", "alpha": 83.845, "beta": 150.738, "gamma": -67.805, "delta": 147.536, "epsilon": -84.542, "zeta": -99.557, "epsilon_zeta": 15.015, "bb_type": "--", "chi": 56.718, "glyco_bond": "syn", "C5prime_xyz": [ -5.357, 3.883, 1.078 ], "P_xyz": [ -7.669, 2.811, 0.473 ], "form": ".", "ssZp": -0.423, "Dp": 0.466, "splay_angle": 86.993, "splay_distance": 13.036, "splay_ratio": 0.690, "d22": null, "d64": null, "eta": -118.649, "theta": -92.420, "eta_prime": -78.945, "theta_prime": -92.512, "eta_base": -65.250, "theta_base": -53.633, "v0": -22.878, "v1": 37.216, "v2": -36.532, "v3": 24.308, "v4": -1.112, "amplitude": 38.230, "phase_angle": 162.860, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "5r", "suiteness": 0.477, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 212.437, 158.249, 248.243 ], "x_axis": [ -0.009, -0.878, 0.479 ], "y_axis": [ -0.342, -0.448, -0.826 ], "z_axis": [ 0.939, -0.172, -0.297 ], "quaternion": [ -0.248, 0.659, -0.463, 0.539 ] } }, { "index": 1710, "index_chain": 1710, "chain_name": "A", "nt_resnum": 1788, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1788", "linked_nts": [ "///A/1787", "///A/1789" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,splayed-apart", "alpha": -74.863, "beta": 179.301, "gamma": 53.934, "delta": 87.231, "epsilon": -173.947, "zeta": -73.990, "epsilon_zeta": -99.957, "bb_type": "BI", "chi": -176.182, "glyco_bond": "anti", "C5prime_xyz": [ -1.447, 8.431, 1.508 ], "P_xyz": [ 0.918, 8.458, 2.616 ], "form": ".", "ssZp": 4.060, "Dp": 4.224, "splay_angle": 20.184, "splay_distance": 3.022, "splay_ratio": 0.176, "d22": null, "d64": null, "eta": 153.832, "theta": -130.302, "eta_prime": -164.530, "theta_prime": -129.221, "eta_base": -161.688, "theta_base": -87.626, "v0": 0.733, "v1": -20.105, "v2": 30.603, "v3": -31.114, "v4": 19.216, "amplitude": 32.069, "phase_angle": 17.386, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.430, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 205.235, 167.294, 242.221 ], "x_axis": [ 0.820, 0.086, 0.566 ], "y_axis": [ 0.242, -0.948, -0.206 ], "z_axis": [ 0.519, 0.306, -0.798 ], "quaternion": [ -0.136, 0.944, 0.087, 0.287 ] } }, { "index": 1711, "index_chain": 1711, "chain_name": "A", "nt_resnum": 1789, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1789", "linked_nts": [ "///A/1788", "///A/1790" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor", "alpha": -151.613, "beta": -127.779, "gamma": 99.841, "delta": 87.357, "epsilon": -116.395, "zeta": -116.253, "epsilon_zeta": -0.142, "bb_type": "--", "chi": -148.972, "glyco_bond": "anti", "C5prime_xyz": [ -1.399, 8.733, -0.071 ], "P_xyz": [ 1.207, 8.422, 0.003 ], "form": ".", "ssZp": 3.609, "Dp": 4.484, "splay_angle": 23.326, "splay_distance": 3.987, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 168.331, "theta": -109.756, "eta_prime": -177.424, "theta_prime": -119.596, "eta_base": -125.849, "theta_base": -101.451, "v0": -0.277, "v1": -19.342, "v2": 30.428, "v3": -31.452, "v4": 20.063, "amplitude": 32.203, "phase_angle": 19.111, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.012, "origin": [ 207.290, 168.559, 240.402 ], "x_axis": [ 0.723, -0.650, 0.233 ], "y_axis": [ -0.371, -0.650, -0.663 ], "z_axis": [ 0.583, 0.393, -0.711 ], "quaternion": [ -0.301, 0.878, -0.291, 0.232 ] } }, { "index": 1712, "index_chain": 1712, "chain_name": "A", "nt_resnum": 1790, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1790", "linked_nts": [ "///A/1789", "///A/1791" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop", "alpha": 107.227, "beta": -114.116, "gamma": -162.039, "delta": 88.183, "epsilon": -70.679, "zeta": -38.845, "epsilon_zeta": -31.834, "bb_type": "--", "chi": -157.310, "glyco_bond": "anti", "C5prime_xyz": [ -1.470, 8.730, 0.371 ], "P_xyz": [ -0.626, 9.684, -1.916 ], "form": ".", "ssZp": 3.304, "Dp": 4.233, "splay_angle": 19.527, "splay_distance": 3.545, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": -172.559, "theta": -100.646, "eta_prime": -163.713, "theta_prime": -123.471, "eta_base": -131.397, "theta_base": -100.723, "v0": -0.243, "v1": -19.398, "v2": 30.428, "v3": -31.387, "v4": 20.016, "amplitude": 32.182, "phase_angle": 19.001, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.005, "origin": [ 210.665, 168.866, 238.303 ], "x_axis": [ 0.476, -0.879, -0.026 ], "y_axis": [ -0.507, -0.250, -0.825 ], "z_axis": [ 0.719, 0.406, -0.564 ], "quaternion": [ -0.407, 0.757, -0.458, 0.229 ] } }, { "index": 1713, "index_chain": 1713, "chain_name": "A", "nt_resnum": 1791, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1791", "linked_nts": [ "///A/1790", "///A/1792" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": -134.695, "beta": 82.739, "gamma": 144.556, "delta": 85.152, "epsilon": 156.631, "zeta": 42.185, "epsilon_zeta": 114.446, "bb_type": "--", "chi": -94.974, "glyco_bond": "anti", "C5prime_xyz": [ -2.044, 7.322, -2.848 ], "P_xyz": [ -3.508, 6.110, -4.638 ], "form": ".", "ssZp": 1.424, "Dp": 4.042, "splay_angle": 93.450, "splay_distance": 15.075, "splay_ratio": 0.729, "d22": null, "d64": null, "eta": 158.682, "theta": -125.457, "eta_prime": 168.883, "theta_prime": -165.016, "eta_base": -154.374, "theta_base": -173.631, "v0": 6.248, "v1": -25.049, "v2": 33.176, "v3": -30.634, "v4": 15.464, "amplitude": 33.522, "phase_angle": 8.248, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.035, "frame": { "rmsd": 0.012, "origin": [ 212.074, 167.950, 235.181 ], "x_axis": [ 0.148, -0.989, -0.010 ], "y_axis": [ -0.002, 0.010, -1.000 ], "z_axis": [ 0.989, 0.148, -0.001 ], "quaternion": [ 0.538, -0.534, 0.464, -0.459 ] } }, { "index": 1714, "index_chain": 1714, "chain_name": "A", "nt_resnum": 1792, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1792", "linked_nts": [ "///A/1791", "///A/1793" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": 124.648, "beta": 59.561, "gamma": -165.913, "delta": 79.721, "epsilon": -127.247, "zeta": -69.116, "epsilon_zeta": -58.131, "bb_type": "BI", "chi": -139.799, "glyco_bond": "anti", "C5prime_xyz": [ -1.589, 8.758, -0.710 ], "P_xyz": [ -3.549, 9.969, -1.961 ], "form": ".", "ssZp": 3.354, "Dp": 4.691, "splay_angle": 74.417, "splay_distance": 12.803, "splay_ratio": 0.608, "d22": null, "d64": null, "eta": 88.573, "theta": -160.526, "eta_prime": 133.395, "theta_prime": -152.866, "eta_base": 129.293, "theta_base": -169.023, "v0": -0.096, "v1": -22.738, "v2": 35.645, "v3": -36.721, "v4": 23.195, "amplitude": 37.647, "phase_angle": 18.766, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 223.372, 167.320, 225.221 ], "x_axis": [ 0.069, -0.929, 0.364 ], "y_axis": [ -0.997, -0.077, -0.010 ], "z_axis": [ 0.037, -0.362, -0.931 ], "quaternion": [ 0.122, 0.721, -0.668, 0.139 ] } }, { "index": 1715, "index_chain": 1715, "chain_name": "A", "nt_resnum": 1793, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1793", "linked_nts": [ "///A/1792", "///A/1794" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": 163.265, "beta": -127.254, "gamma": -79.794, "delta": 79.491, "epsilon": -144.004, "zeta": -73.877, "epsilon_zeta": -70.128, "bb_type": "BI", "chi": -167.403, "glyco_bond": "anti", "C5prime_xyz": [ -1.384, 8.626, 0.928 ], "P_xyz": [ -1.808, 11.190, 1.237 ], "form": "A", "ssZp": 4.624, "Dp": 4.724, "splay_angle": 23.566, "splay_distance": 3.800, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": -75.665, "theta": 157.922, "eta_prime": -57.973, "theta_prime": 176.202, "eta_base": -45.324, "theta_base": -145.348, "v0": 4.131, "v1": -26.936, "v2": 38.249, "v3": -36.895, "v4": 20.681, "amplitude": 39.207, "phase_angle": 12.690, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 220.449, 158.967, 215.969 ], "x_axis": [ -0.533, -0.050, -0.845 ], "y_axis": [ -0.671, 0.633, 0.386 ], "z_axis": [ 0.516, 0.772, -0.371 ], "quaternion": [ 0.427, -0.226, 0.796, 0.364 ] } }, { "index": 1716, "index_chain": 1716, "chain_name": "A", "nt_resnum": 1794, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1794", "linked_nts": [ "///A/1793", "///A/1795" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -64.255, "beta": 159.663, "gamma": 69.881, "delta": 78.036, "epsilon": -156.219, "zeta": -68.255, "epsilon_zeta": -87.965, "bb_type": "BI", "chi": -172.231, "glyco_bond": "anti", "C5prime_xyz": [ -1.646, 8.726, 1.189 ], "P_xyz": [ 0.867, 9.404, 1.017 ], "form": "A", "ssZp": 4.571, "Dp": 4.570, "splay_angle": 21.899, "splay_distance": 3.555, "splay_ratio": 0.197, "d22": 4.465, "d64": 4.611, "eta": 170.127, "theta": -148.380, "eta_prime": -171.844, "theta_prime": -150.800, "eta_base": -129.202, "theta_base": -128.437, "v0": -1.336, "v1": -22.629, "v2": 36.604, "v3": -38.340, "v4": 24.994, "amplitude": 39.070, "phase_angle": 20.465, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.528, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 222.543, 160.168, 213.035 ], "x_axis": [ -0.817, 0.252, -0.518 ], "y_axis": [ -0.278, 0.615, 0.738 ], "z_axis": [ 0.505, 0.747, -0.433 ], "quaternion": [ 0.302, -0.008, 0.846, 0.439 ] } }, { "index": 1717, "index_chain": 1717, "chain_name": "A", "nt_resnum": 1795, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1795", "linked_nts": [ "///A/1794", "///A/1796" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -67.249, "beta": -178.345, "gamma": 53.527, "delta": 81.235, "epsilon": -169.863, "zeta": -75.189, "epsilon_zeta": -94.674, "bb_type": "BI", "chi": -161.118, "glyco_bond": "anti", "C5prime_xyz": [ -1.456, 8.802, 0.578 ], "P_xyz": [ 1.046, 9.389, 1.092 ], "form": ".", "ssZp": 4.310, "Dp": 4.400, "splay_angle": 26.565, "splay_distance": 4.516, "splay_ratio": 0.238, "d22": 4.708, "d64": 5.365, "eta": 170.014, "theta": -135.797, "eta_prime": -176.369, "theta_prime": -143.827, "eta_base": -138.007, "theta_base": -126.322, "v0": -0.160, "v1": -22.023, "v2": 34.569, "v3": -35.630, "v4": 22.570, "amplitude": 36.529, "phase_angle": 18.857, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.919, "filter_rmsd": 0.060, "frame": { "rmsd": 0.006, "origin": [ 223.998, 161.236, 209.972 ], "x_axis": [ -0.857, 0.515, -0.017 ], "y_axis": [ 0.244, 0.433, 0.868 ], "z_axis": [ 0.455, 0.739, -0.497 ], "quaternion": [ 0.141, 0.227, 0.835, 0.481 ] } }, { "index": 1718, "index_chain": 1718, "chain_name": "A", "nt_resnum": 1796, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1796", "linked_nts": [ "///A/1795", "///A/1797" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 161.773, "beta": -164.183, "gamma": 173.885, "delta": 82.484, "epsilon": -108.111, "zeta": -45.625, "epsilon_zeta": -62.486, "bb_type": "--", "chi": 178.884, "glyco_bond": "anti", "C5prime_xyz": [ -1.214, 8.340, 1.778 ], "P_xyz": [ 0.631, 10.021, 1.018 ], "form": ".", "ssZp": 4.658, "Dp": 4.722, "splay_angle": 23.300, "splay_distance": 4.122, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 173.581, "theta": -135.625, "eta_prime": -177.416, "theta_prime": -142.612, "eta_base": -145.080, "theta_base": -123.840, "v0": 4.109, "v1": -25.355, "v2": 35.868, "v3": -34.462, "v4": 19.128, "amplitude": 36.715, "phase_angle": 12.328, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.879, "filter_rmsd": 0.065, "frame": { "rmsd": 0.007, "origin": [ 224.704, 163.368, 206.053 ], "x_axis": [ -0.669, 0.628, 0.398 ], "y_axis": [ 0.583, 0.111, 0.805 ], "z_axis": [ 0.461, 0.770, -0.440 ], "quaternion": [ 0.021, 0.406, 0.745, 0.529 ] } }, { "index": 1719, "index_chain": 1719, "chain_name": "A", "nt_resnum": 1797, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1797", "linked_nts": [ "///A/1796", "///A/1798" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -112.115, "beta": 100.282, "gamma": 150.645, "delta": 82.613, "epsilon": -95.468, "zeta": -108.987, "epsilon_zeta": 13.519, "bb_type": "--", "chi": 163.931, "glyco_bond": "anti", "C5prime_xyz": [ -1.652, 7.921, 2.470 ], "P_xyz": [ -0.819, 10.189, 1.482 ], "form": ".", "ssZp": 4.582, "Dp": 4.648, "splay_angle": 21.076, "splay_distance": 3.750, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 175.753, "theta": -148.813, "eta_prime": -173.956, "theta_prime": -151.910, "eta_base": -139.600, "theta_base": -121.162, "v0": 3.017, "v1": -24.120, "v2": 34.870, "v3": -34.159, "v4": 19.644, "amplitude": 35.930, "phase_angle": 13.954, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.010, "filter_rmsd": 0.046, "frame": { "rmsd": 0.015, "origin": [ 223.974, 166.429, 203.391 ], "x_axis": [ -0.448, 0.507, 0.736 ], "y_axis": [ 0.794, -0.154, 0.588 ], "z_axis": [ 0.412, 0.848, -0.334 ], "quaternion": [ -0.127, 0.510, 0.638, 0.563 ] } }, { "index": 1720, "index_chain": 1720, "chain_name": "A", "nt_resnum": 1798, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1798", "linked_nts": [ "///A/1797", "///A/1799" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 110.476, "beta": -130.649, "gamma": -166.922, "delta": 79.663, "epsilon": -131.309, "zeta": -82.733, "epsilon_zeta": -48.575, "bb_type": "BI", "chi": 174.547, "glyco_bond": "anti", "C5prime_xyz": [ -1.710, 8.305, 1.945 ], "P_xyz": [ -0.357, 10.198, 0.765 ], "form": "A", "ssZp": 4.717, "Dp": 4.728, "splay_angle": 24.162, "splay_distance": 3.953, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 140.061, "theta": -169.268, "eta_prime": 164.857, "theta_prime": -165.576, "eta_base": -146.096, "theta_base": -143.076, "v0": 2.629, "v1": -25.526, "v2": 37.498, "v3": -36.981, "v4": 21.647, "amplitude": 38.784, "phase_angle": 14.791, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 222.828, 169.877, 202.462 ], "x_axis": [ 0.012, 0.212, 0.977 ], "y_axis": [ 0.946, -0.319, 0.058 ], "z_axis": [ 0.324, 0.924, -0.204 ], "quaternion": [ -0.350, 0.620, 0.467, 0.525 ] } }, { "index": 1721, "index_chain": 1721, "chain_name": "A", "nt_resnum": 1799, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1799", "linked_nts": [ "///A/1798", "///A/1800" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -61.941, "beta": 166.636, "gamma": 58.902, "delta": 80.248, "epsilon": -151.127, "zeta": -63.823, "epsilon_zeta": -87.304, "bb_type": "BI", "chi": -173.464, "glyco_bond": "anti", "C5prime_xyz": [ -1.993, 8.683, 1.224 ], "P_xyz": [ 0.456, 9.444, 1.708 ], "form": "A", "ssZp": 4.478, "Dp": 4.503, "splay_angle": 23.844, "splay_distance": 3.843, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": 168.392, "theta": -138.654, "eta_prime": -177.981, "theta_prime": -138.510, "eta_base": -144.228, "theta_base": -96.775, "v0": -3.693, "v1": -19.386, "v2": 33.664, "v3": -36.776, "v4": 25.500, "amplitude": 36.910, "phase_angle": 24.210, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.758, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 221.373, 173.548, 202.299 ], "x_axis": [ 0.455, -0.071, 0.888 ], "y_axis": [ 0.814, -0.372, -0.447 ], "z_axis": [ 0.362, 0.926, -0.111 ], "quaternion": [ -0.493, 0.696, 0.267, 0.449 ] } }, { "index": 1722, "index_chain": 1722, "chain_name": "A", "nt_resnum": 1800, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1800", "linked_nts": [ "///A/1799", "///A/1801" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -69.571, "beta": -174.756, "gamma": 45.909, "delta": 79.556, "epsilon": -139.476, "zeta": -84.172, "epsilon_zeta": -55.304, "bb_type": "BI", "chi": -155.935, "glyco_bond": "anti", "C5prime_xyz": [ -1.338, 8.823, 0.279 ], "P_xyz": [ 1.160, 9.401, 0.799 ], "form": "A", "ssZp": 4.255, "Dp": 4.667, "splay_angle": 16.954, "splay_distance": 2.723, "splay_ratio": 0.148, "d22": null, "d64": null, "eta": 165.305, "theta": -152.366, "eta_prime": 178.875, "theta_prime": -149.272, "eta_base": -124.496, "theta_base": -127.415, "v0": 0.654, "v1": -23.730, "v2": 36.579, "v3": -37.167, "v4": 23.012, "amplitude": 38.383, "phase_angle": 17.638, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.839, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 222.667, 176.647, 204.166 ], "x_axis": [ 0.886, -0.362, 0.291 ], "y_axis": [ 0.255, -0.145, -0.956 ], "z_axis": [ 0.388, 0.921, -0.036 ], "quaternion": [ 0.653, -0.719, 0.037, -0.236 ] } }, { "index": 1723, "index_chain": 1723, "chain_name": "A", "nt_resnum": 1801, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1801", "linked_nts": [ "///A/1800", "///A/1802" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet", "alpha": -62.211, "beta": 155.791, "gamma": 58.315, "delta": 79.279, "epsilon": -155.522, "zeta": -66.360, "epsilon_zeta": -89.162, "bb_type": "BI", "chi": -154.491, "glyco_bond": "anti", "C5prime_xyz": [ -1.481, 8.827, 0.159 ], "P_xyz": [ 1.034, 9.226, -0.412 ], "form": ".", "ssZp": 4.280, "Dp": 4.593, "splay_angle": 65.765, "splay_distance": 11.186, "splay_ratio": 0.551, "d22": null, "d64": null, "eta": 160.682, "theta": -100.892, "eta_prime": 174.820, "theta_prime": -121.988, "eta_base": -151.321, "theta_base": -158.173, "v0": 0.569, "v1": -23.820, "v2": 36.691, "v3": -37.370, "v4": 23.220, "amplitude": 38.530, "phase_angle": 17.774, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.751, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 223.799, 178.941, 205.099 ], "x_axis": [ 0.834, -0.529, -0.155 ], "y_axis": [ -0.026, 0.243, -0.970 ], "z_axis": [ 0.550, 0.813, 0.189 ], "quaternion": [ 0.753, -0.592, 0.234, -0.167 ] } }, { "index": 1724, "index_chain": 1724, "chain_name": "A", "nt_resnum": 1802, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1802", "linked_nts": [ "///A/1801", "///A/1803" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,cap-acceptor", "alpha": 175.742, "beta": -124.134, "gamma": -80.580, "delta": 77.146, "epsilon": -131.548, "zeta": -62.294, "epsilon_zeta": -69.254, "bb_type": "BI", "chi": -173.977, "glyco_bond": "anti", "C5prime_xyz": [ -1.320, 8.467, 1.267 ], "P_xyz": [ -1.820, 10.987, 1.808 ], "form": ".", "ssZp": 4.773, "Dp": 4.829, "splay_angle": 40.806, "splay_distance": 6.248, "splay_ratio": 0.353, "d22": null, "d64": null, "eta": -54.542, "theta": 176.640, "eta_prime": -45.825, "theta_prime": -160.766, "eta_base": -47.988, "theta_base": -114.573, "v0": 4.768, "v1": -28.572, "v2": 40.254, "v3": -38.515, "v4": 21.317, "amplitude": 41.164, "phase_angle": 12.070, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.011, "origin": [ 226.969, 188.774, 209.388 ], "x_axis": [ -0.243, 0.969, -0.045 ], "y_axis": [ -0.172, -0.089, -0.981 ], "z_axis": [ -0.955, -0.231, 0.188 ], "quaternion": [ 0.463, -0.405, -0.492, 0.617 ] } }, { "index": 1725, "index_chain": 1725, "chain_name": "A", "nt_resnum": 1803, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1803", "linked_nts": [ "///A/1802", "///A/1804" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,cap-donor,phosphate", "alpha": -57.227, "beta": 165.778, "gamma": 71.110, "delta": 79.302, "epsilon": -142.743, "zeta": -63.801, "epsilon_zeta": -78.942, "bb_type": "BI", "chi": -179.382, "glyco_bond": "anti", "C5prime_xyz": [ -1.706, 8.551, 1.608 ], "P_xyz": [ 0.813, 9.159, 1.826 ], "form": ".", "ssZp": 4.640, "Dp": 4.627, "splay_angle": 34.390, "splay_distance": 5.681, "splay_ratio": 0.305, "d22": 4.801, "d64": 5.389, "eta": -179.398, "theta": -112.082, "eta_prime": -152.884, "theta_prime": -123.333, "eta_base": -96.658, "theta_base": -94.781, "v0": -1.098, "v1": -22.382, "v2": 36.011, "v3": -37.642, "v4": 24.396, "amplitude": 38.368, "phase_angle": 20.190, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.434, "filter_rmsd": 0.061, "frame": { "rmsd": 0.009, "origin": [ 221.729, 192.110, 210.065 ], "x_axis": [ -0.245, 0.547, -0.801 ], "y_axis": [ 0.224, -0.772, -0.595 ], "z_axis": [ -0.943, -0.326, 0.067 ], "quaternion": [ 0.112, -0.604, -0.319, 0.722 ] } }, { "index": 1726, "index_chain": 1726, "chain_name": "A", "nt_resnum": 1804, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1804", "linked_nts": [ "///A/1803", "///A/1805" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop,cap-acceptor,phosphate", "alpha": 178.812, "beta": 178.083, "gamma": 158.520, "delta": 79.462, "epsilon": -108.597, "zeta": -50.976, "epsilon_zeta": -57.621, "bb_type": "--", "chi": 179.166, "glyco_bond": "anti", "C5prime_xyz": [ -1.092, 8.224, 1.753 ], "P_xyz": [ 0.622, 9.984, 0.923 ], "form": ".", "ssZp": 4.830, "Dp": 4.859, "splay_angle": 53.463, "splay_distance": 7.985, "splay_ratio": 0.451, "d22": null, "d64": null, "eta": 157.444, "theta": -120.775, "eta_prime": 176.450, "theta_prime": -109.676, "eta_base": -131.110, "theta_base": -69.514, "v0": 7.503, "v1": -29.883, "v2": 39.859, "v3": -36.549, "v4": 18.293, "amplitude": 40.261, "phase_angle": 8.099, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.164, "filter_rmsd": 0.103, "frame": { "rmsd": 0.009, "origin": [ 216.336, 193.250, 208.690 ], "x_axis": [ 0.040, -0.146, -0.988 ], "y_axis": [ 0.413, -0.898, 0.150 ], "z_axis": [ -0.910, -0.414, 0.024 ], "quaternion": [ 0.204, 0.692, 0.096, -0.686 ] } }, { "index": 1727, "index_chain": 1727, "chain_name": "A", "nt_resnum": 1805, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1805", "linked_nts": [ "///A/1804", "///A/1806" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,A-minor,cap-donor", "alpha": -70.196, "beta": 159.019, "gamma": 82.643, "delta": 81.901, "epsilon": -149.180, "zeta": -65.691, "epsilon_zeta": -83.489, "bb_type": "BI", "chi": 170.880, "glyco_bond": "anti", "C5prime_xyz": [ -1.745, 8.270, 2.112 ], "P_xyz": [ 0.803, 8.862, 2.303 ], "form": "A", "ssZp": 4.394, "Dp": 4.559, "splay_angle": 23.117, "splay_distance": 3.592, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 164.476, "theta": -137.322, "eta_prime": -153.470, "theta_prime": -138.880, "eta_base": -77.950, "theta_base": -111.009, "v0": 0.646, "v1": -22.532, "v2": 34.578, "v3": -35.131, "v4": 21.766, "amplitude": 36.272, "phase_angle": 17.581, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.010, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 214.189, 187.751, 203.314 ], "x_axis": [ 0.518, -0.847, -0.120 ], "y_axis": [ 0.208, -0.011, 0.978 ], "z_axis": [ -0.830, -0.532, 0.170 ], "quaternion": [ 0.648, 0.583, -0.274, -0.407 ] } }, { "index": 1728, "index_chain": 1728, "chain_name": "A", "nt_resnum": 1806, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1806", "linked_nts": [ "///A/1805", "///A/1807" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,cap-donor", "alpha": -89.522, "beta": -162.294, "gamma": 59.055, "delta": 84.956, "epsilon": -158.246, "zeta": -72.878, "epsilon_zeta": -85.368, "bb_type": "BI", "chi": -156.607, "glyco_bond": "anti", "C5prime_xyz": [ -1.322, 8.682, 0.352 ], "P_xyz": [ 1.198, 9.015, 0.977 ], "form": "A", "ssZp": 4.260, "Dp": 4.497, "splay_angle": 25.710, "splay_distance": 4.180, "splay_ratio": 0.224, "d22": 4.982, "d64": 5.300, "eta": 164.637, "theta": -149.366, "eta_prime": 179.148, "theta_prime": -148.277, "eta_base": -136.484, "theta_base": -136.395, "v0": 3.055, "v1": -23.622, "v2": 34.006, "v3": -33.188, "v4": 19.021, "amplitude": 35.003, "phase_angle": 13.709, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.426, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 211.739, 185.497, 201.965 ], "x_axis": [ 0.502, -0.643, 0.578 ], "y_axis": [ -0.234, 0.543, 0.807 ], "z_axis": [ -0.833, -0.540, 0.122 ], "quaternion": [ 0.736, 0.458, -0.479, -0.139 ] } }, { "index": 1729, "index_chain": 1729, "chain_name": "A", "nt_resnum": 1807, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1807", "linked_nts": [ "///A/1806", "///A/1808" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": -66.070, "beta": 174.399, "gamma": 60.536, "delta": 80.323, "epsilon": -151.449, "zeta": -99.247, "epsilon_zeta": -52.201, "bb_type": "BI", "chi": -152.811, "glyco_bond": "anti", "C5prime_xyz": [ -1.710, 8.838, 0.056 ], "P_xyz": [ 0.792, 9.563, -0.097 ], "form": ".", "ssZp": 4.158, "Dp": 4.519, "splay_angle": 34.399, "splay_distance": 5.531, "splay_ratio": 0.296, "d22": 5.890, "d64": 5.913, "eta": 175.139, "theta": -175.363, "eta_prime": -173.628, "theta_prime": -172.512, "eta_base": -151.848, "theta_base": 173.198, "v0": -3.026, "v1": -20.067, "v2": 34.188, "v3": -36.905, "v4": 25.165, "amplitude": 37.188, "phase_angle": 23.169, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.856, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 208.886, 182.719, 200.695 ], "x_axis": [ 0.349, -0.424, 0.836 ], "y_axis": [ -0.453, 0.705, 0.546 ], "z_axis": [ -0.820, -0.569, 0.054 ], "quaternion": [ 0.726, 0.384, -0.570, 0.010 ] } }, { "index": 1730, "index_chain": 1730, "chain_name": "A", "nt_resnum": 1808, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1808", "linked_nts": [ "///A/1807", "///A/1809" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart", "alpha": -79.104, "beta": -175.393, "gamma": 48.167, "delta": 81.951, "epsilon": -170.581, "zeta": 140.183, "epsilon_zeta": 49.236, "bb_type": "--", "chi": -138.216, "glyco_bond": "anti", "C5prime_xyz": [ -1.548, 8.686, -0.784 ], "P_xyz": [ 0.964, 9.384, -0.915 ], "form": ".", "ssZp": 3.720, "Dp": 4.416, "splay_angle": 144.880, "splay_distance": 19.797, "splay_ratio": 0.954, "d22": null, "d64": null, "eta": 161.055, "theta": 44.647, "eta_prime": 157.831, "theta_prime": 35.021, "eta_base": 147.080, "theta_base": 22.520, "v0": 0.123, "v1": -22.172, "v2": 34.497, "v3": -35.434, "v4": 22.252, "amplitude": 36.363, "phase_angle": 18.436, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.428, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 205.385, 181.140, 196.715 ], "x_axis": [ 0.633, -0.144, 0.761 ], "y_axis": [ -0.583, 0.558, 0.590 ], "z_axis": [ -0.510, -0.817, 0.269 ], "quaternion": [ 0.784, 0.449, -0.405, 0.140 ] } }, { "index": 1731, "index_chain": 1731, "chain_name": "A", "nt_resnum": 1809, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1809", "linked_nts": [ "///A/1808", "///A/1810" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": -10.095, "beta": -141.188, "gamma": -46.100, "delta": 145.978, "epsilon": -122.015, "zeta": -28.344, "epsilon_zeta": -93.671, "bb_type": "--", "chi": -132.078, "glyco_bond": "anti", "C5prime_xyz": [ -1.831, 8.654, -0.554 ], "P_xyz": [ -1.899, 11.268, -0.313 ], "form": ".", "ssZp": 1.453, "Dp": 1.464, "splay_angle": 56.834, "splay_distance": 9.303, "splay_ratio": 0.476, "d22": null, "d64": null, "eta": -150.103, "theta": -42.443, "eta_prime": -136.898, "theta_prime": -70.122, "eta_base": -120.245, "theta_base": -85.289, "v0": -21.063, "v1": 35.058, "v2": -34.916, "v3": 23.634, "v4": -1.797, "amplitude": 36.312, "phase_angle": 164.061, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 190.842, 191.096, 205.732 ], "x_axis": [ -0.312, 0.499, -0.808 ], "y_axis": [ 0.485, -0.648, -0.587 ], "z_axis": [ -0.817, -0.575, -0.040 ], "quaternion": [ 0.005, -0.586, -0.419, 0.693 ] } }, { "index": 1732, "index_chain": 1732, "chain_name": "A", "nt_resnum": 1810, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1810", "linked_nts": [ "///A/1809", "///A/1811" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 154.617, "beta": -161.082, "gamma": 60.092, "delta": 147.632, "epsilon": -115.201, "zeta": 129.334, "epsilon_zeta": 115.464, "bb_type": "BII", "chi": -135.922, "glyco_bond": "anti", "C5prime_xyz": [ -1.939, 8.725, -0.363 ], "P_xyz": [ 0.120, 9.522, 1.061 ], "form": ".", "ssZp": 1.306, "Dp": 1.305, "splay_angle": 126.281, "splay_distance": 17.203, "splay_ratio": 0.892, "d22": null, "d64": null, "eta": 45.183, "theta": 108.994, "eta_prime": 108.932, "theta_prime": 99.638, "eta_base": 129.966, "theta_base": 157.323, "v0": -21.926, "v1": 35.913, "v2": -35.377, "v3": 23.653, "v4": -1.273, "amplitude": 36.958, "phase_angle": 163.180, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 186.529, 183.579, 202.351 ], "x_axis": [ -0.228, 0.547, 0.806 ], "y_axis": [ 0.879, -0.241, 0.412 ], "z_axis": [ 0.419, 0.802, -0.426 ], "quaternion": [ -0.163, 0.600, 0.594, 0.511 ] } }, { "index": 1733, "index_chain": 1733, "chain_name": "A", "nt_resnum": 1811, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1811", "linked_nts": [ "///A/1810", "///A/1812" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": -59.071, "beta": -116.461, "gamma": 50.118, "delta": 145.096, "epsilon": -144.289, "zeta": -97.687, "epsilon_zeta": -46.602, "bb_type": "BI", "chi": -116.611, "glyco_bond": "anti", "C5prime_xyz": [ -1.545, 8.397, -1.382 ], "P_xyz": [ 0.153, 9.374, 0.347 ], "form": ".", "ssZp": 1.884, "Dp": 1.986, "splay_angle": 56.077, "splay_distance": 8.948, "splay_ratio": 0.474, "d22": null, "d64": null, "eta": -94.482, "theta": -108.218, "eta_prime": -97.998, "theta_prime": -111.693, "eta_base": -152.065, "theta_base": -67.096, "v0": -16.476, "v1": 30.172, "v2": -31.608, "v3": 22.927, "v4": -4.226, "amplitude": 32.236, "phase_angle": 168.668, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.005, "origin": [ 196.560, 172.580, 193.729 ], "x_axis": [ -0.609, 0.480, -0.631 ], "y_axis": [ -0.164, 0.703, 0.692 ], "z_axis": [ 0.776, 0.525, -0.350 ], "quaternion": [ 0.431, 0.097, 0.816, 0.373 ] } }, { "index": 1734, "index_chain": 1734, "chain_name": "A", "nt_resnum": 1812, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1812", "linked_nts": [ "///A/1811", "///A/1813" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": -56.283, "beta": 172.936, "gamma": 52.365, "delta": 81.332, "epsilon": -109.412, "zeta": -96.065, "epsilon_zeta": -13.346, "bb_type": "--", "chi": -103.036, "glyco_bond": "anti", "C5prime_xyz": [ -2.108, 7.806, -2.542 ], "P_xyz": [ 0.084, 7.808, -3.963 ], "form": ".", "ssZp": 0.397, "Dp": 4.691, "splay_angle": 81.264, "splay_distance": 12.150, "splay_ratio": 0.655, "d22": null, "d64": null, "eta": -170.627, "theta": -150.555, "eta_prime": -151.517, "theta_prime": -113.579, "eta_base": -110.056, "theta_base": -85.221, "v0": 1.247, "v1": -23.374, "v2": 35.360, "v3": -35.675, "v4": 21.695, "amplitude": 36.926, "phase_angle": 16.748, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.069, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 199.953, 180.841, 194.303 ], "x_axis": [ -0.204, 0.881, 0.427 ], "y_axis": [ 0.427, -0.313, 0.849 ], "z_axis": [ 0.881, 0.355, -0.312 ], "quaternion": [ 0.207, 0.596, 0.548, 0.549 ] } }, { "index": 1735, "index_chain": 1735, "chain_name": "A", "nt_resnum": 1813, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1813", "linked_nts": [ "///A/1812", "///A/1814" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -75.631, "beta": -118.354, "gamma": 56.504, "delta": 139.659, "epsilon": 36.791, "zeta": -66.449, "epsilon_zeta": -256.760, "bb_type": "--", "chi": -155.951, "glyco_bond": "anti", "C5prime_xyz": [ -1.209, 8.361, 0.835 ], "P_xyz": [ -0.179, 7.753, 3.167 ], "form": ".", "ssZp": -0.300, "Dp": 0.413, "splay_angle": 59.639, "splay_distance": 9.575, "splay_ratio": 0.499, "d22": null, "d64": null, "eta": -153.089, "theta": 151.624, "eta_prime": -132.263, "theta_prime": 83.444, "eta_base": -142.475, "theta_base": 72.244, "v0": -9.897, "v1": 23.017, "v2": -26.672, "v3": 21.658, "v4": -7.628, "amplitude": 26.698, "phase_angle": 177.470, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.289, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 204.119, 184.561, 205.093 ], "x_axis": [ -0.591, 0.250, -0.767 ], "y_axis": [ 0.373, -0.758, -0.535 ], "z_axis": [ -0.715, -0.603, 0.354 ], "quaternion": [ -0.037, -0.451, -0.346, 0.822 ] } }, { "index": 1736, "index_chain": 1736, "chain_name": "A", "nt_resnum": 1814, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1814", "linked_nts": [ "///A/1813", "///A/1815" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart", "alpha": 159.227, "beta": -164.582, "gamma": 171.702, "delta": 80.009, "epsilon": -152.247, "zeta": -96.639, "epsilon_zeta": -55.608, "bb_type": "BI", "chi": -144.374, "glyco_bond": "anti", "C5prime_xyz": [ -1.375, 8.672, -0.443 ], "P_xyz": [ -0.408, 9.711, -2.629 ], "form": ".", "ssZp": 3.906, "Dp": 4.651, "splay_angle": 89.190, "splay_distance": 12.985, "splay_ratio": 0.702, "d22": null, "d64": null, "eta": 148.757, "theta": -170.018, "eta_prime": 132.980, "theta_prime": 158.812, "eta_base": 135.549, "theta_base": 108.118, "v0": 3.520, "v1": -26.282, "v2": 37.811, "v3": -36.791, "v4": 20.992, "amplitude": 38.888, "phase_angle": 13.520, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.011, "origin": [ 208.569, 182.959, 196.767 ], "x_axis": [ -0.254, 0.828, 0.500 ], "y_axis": [ 0.404, -0.379, 0.833 ], "z_axis": [ 0.879, 0.413, -0.238 ], "quaternion": [ 0.179, 0.584, 0.527, 0.591 ] } }, { "index": 1737, "index_chain": 1737, "chain_name": "A", "nt_resnum": 1815, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1815", "linked_nts": [ "///A/1814", "///A/1816" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 179.369, "beta": -167.592, "gamma": 65.744, "delta": 147.256, "epsilon": -107.105, "zeta": -68.615, "epsilon_zeta": -38.490, "bb_type": "--", "chi": -109.917, "glyco_bond": "anti", "C5prime_xyz": [ -2.135, 8.288, -1.707 ], "P_xyz": [ 0.287, 9.254, -1.462 ], "form": ".", "ssZp": 1.010, "Dp": 1.090, "splay_angle": 111.768, "splay_distance": 15.164, "splay_ratio": 0.830, "d22": null, "d64": null, "eta": 80.283, "theta": -52.700, "eta_prime": 98.996, "theta_prime": -71.645, "eta_base": 61.215, "theta_base": -28.367, "v0": -22.223, "v1": 36.259, "v2": -35.608, "v3": 23.738, "v4": -1.126, "amplitude": 37.245, "phase_angle": 162.946, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1z", "suiteness": 0.343, "filter_rmsd": 0.038, "frame": { "rmsd": 0.007, "origin": [ 217.191, 173.429, 194.908 ], "x_axis": [ -0.483, -0.656, 0.580 ], "y_axis": [ -0.274, 0.742, 0.611 ], "z_axis": [ -0.832, 0.136, -0.538 ], "quaternion": [ -0.425, -0.280, 0.831, 0.225 ] } }, { "index": 1738, "index_chain": 1738, "chain_name": "A", "nt_resnum": 1816, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1816", "linked_nts": [ "///A/1815", "///A/1817" ], "nt_type": "RNA", "dbn": ")", "summary": "~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop,splayed-apart", "alpha": -80.603, "beta": -171.681, "gamma": 48.857, "delta": 84.661, "epsilon": -118.514, "zeta": -85.940, "epsilon_zeta": -32.574, "bb_type": "--", "chi": 165.831, "glyco_bond": "--", "C5prime_xyz": [ -1.271, 7.758, 2.414 ], "P_xyz": [ 0.926, 7.201, 3.728 ], "form": "A", "ssZp": 4.778, "Dp": 4.802, "splay_angle": 27.759, "splay_distance": 4.134, "splay_ratio": 0.242, "d22": null, "d64": null, "eta": 153.427, "theta": -130.661, "eta_prime": -166.283, "theta_prime": -123.566, "eta_base": -142.404, "theta_base": -91.068, "v0": 8.370, "v1": -28.329, "v2": 36.482, "v3": -32.646, "v4": 15.378, "amplitude": 36.667, "phase_angle": 5.760, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.888, "filter_rmsd": 0.042, "frame": { "rmsd": 0.013, "origin": [ 211.906, 185.709, 202.063 ], "x_axis": [ 0.597, -0.579, 0.555 ], "y_axis": [ 0.218, -0.549, -0.807 ], "z_axis": [ 0.772, 0.603, -0.202 ], "quaternion": [ -0.460, 0.766, -0.118, 0.433 ] } }, { "index": 1739, "index_chain": 1739, "chain_name": "A", "nt_resnum": 1817, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1817", "linked_nts": [ "///A/1816", "///A/1818" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,multiplet,A-minor,phosphate", "alpha": -58.798, "beta": 163.169, "gamma": 54.206, "delta": 81.102, "epsilon": -133.236, "zeta": -80.071, "epsilon_zeta": -53.165, "bb_type": "BI", "chi": -177.669, "glyco_bond": "anti", "C5prime_xyz": [ -1.300, 8.429, 1.582 ], "P_xyz": [ 1.276, 8.511, 1.969 ], "form": "A", "ssZp": 4.731, "Dp": 4.741, "splay_angle": 25.217, "splay_distance": 3.816, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 166.409, "theta": -138.322, "eta_prime": -177.187, "theta_prime": -136.234, "eta_base": -128.743, "theta_base": -102.758, "v0": 4.778, "v1": -27.001, "v2": 37.777, "v3": -35.980, "v4": 19.679, "amplitude": 38.566, "phase_angle": 11.606, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.466, "filter_rmsd": 0.063, "frame": { "rmsd": 0.007, "origin": [ 215.017, 188.117, 203.333 ], "x_axis": [ 0.573, -0.810, -0.125 ], "y_axis": [ -0.307, -0.071, -0.949 ], "z_axis": [ 0.760, 0.582, -0.289 ], "quaternion": [ 0.551, -0.695, 0.402, -0.228 ] } }, { "index": 1740, "index_chain": 1740, "chain_name": "A", "nt_resnum": 1818, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1818", "linked_nts": [ "///A/1817", "///A/1819" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,phosphate", "alpha": -60.042, "beta": 152.673, "gamma": 65.593, "delta": 82.892, "epsilon": -122.708, "zeta": -88.059, "epsilon_zeta": -34.649, "bb_type": "--", "chi": 175.849, "glyco_bond": "anti", "C5prime_xyz": [ -1.638, 8.288, 1.883 ], "P_xyz": [ 0.943, 8.574, 2.072 ], "form": "A", "ssZp": 4.664, "Dp": 4.673, "splay_angle": 26.191, "splay_distance": 4.048, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 173.238, "theta": -135.524, "eta_prime": -169.763, "theta_prime": -133.935, "eta_base": -117.432, "theta_base": -97.788, "v0": 0.964, "v1": -22.730, "v2": 34.608, "v3": -35.018, "v4": 21.519, "amplitude": 36.216, "phase_angle": 17.137, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.585, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 218.725, 189.012, 203.215 ], "x_axis": [ 0.229, -0.707, -0.669 ], "y_axis": [ -0.653, 0.399, -0.644 ], "z_axis": [ 0.722, 0.584, -0.370 ], "quaternion": [ 0.561, -0.548, 0.621, -0.024 ] } }, { "index": 1741, "index_chain": 1741, "chain_name": "A", "nt_resnum": 1819, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1819", "linked_nts": [ "///A/1818", "///A/1820" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,phosphate", "alpha": -53.743, "beta": 145.684, "gamma": 64.180, "delta": 82.908, "epsilon": -102.497, "zeta": -128.994, "epsilon_zeta": 26.497, "bb_type": "--", "chi": 179.043, "glyco_bond": "anti", "C5prime_xyz": [ -1.716, 8.583, 1.627 ], "P_xyz": [ 0.856, 8.831, 1.960 ], "form": ".", "ssZp": 4.274, "Dp": 4.432, "splay_angle": 20.829, "splay_distance": 3.460, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 179.241, "theta": -160.165, "eta_prime": -164.237, "theta_prime": -153.958, "eta_base": -112.278, "theta_base": -132.183, "v0": -3.627, "v1": -18.483, "v2": 32.256, "v3": -35.190, "v4": 24.492, "amplitude": 35.392, "phase_angle": 24.301, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.913, "filter_rmsd": 0.066, "frame": { "rmsd": 0.011, "origin": [ 222.311, 189.611, 201.436 ], "x_axis": [ -0.320, -0.292, -0.901 ], "y_axis": [ -0.699, 0.715, 0.017 ], "z_axis": [ 0.639, 0.635, -0.433 ], "quaternion": [ 0.490, -0.315, 0.786, 0.207 ] } }, { "index": 1742, "index_chain": 1742, "chain_name": "A", "nt_resnum": 1820, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1820", "linked_nts": [ "///A/1819", "///A/1821" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop", "alpha": -53.369, "beta": 141.614, "gamma": 38.940, "delta": 89.240, "epsilon": -116.338, "zeta": -87.900, "epsilon_zeta": -28.438, "bb_type": "--", "chi": -155.508, "glyco_bond": "anti", "C5prime_xyz": [ -0.641, 8.440, 0.300 ], "P_xyz": [ 1.880, 7.698, 0.250 ], "form": ".", "ssZp": 4.048, "Dp": 4.750, "splay_angle": 42.956, "splay_distance": 6.698, "splay_ratio": 0.367, "d22": null, "d64": null, "eta": 168.350, "theta": -115.564, "eta_prime": 171.893, "theta_prime": -111.962, "eta_base": -164.350, "theta_base": -89.404, "v0": 7.784, "v1": -25.472, "v2": 32.538, "v3": -28.974, "v4": 13.420, "amplitude": 32.673, "phase_angle": 5.214, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.044, "filter_rmsd": 0.045, "frame": { "rmsd": 0.019, "origin": [ 224.794, 192.015, 201.255 ], "x_axis": [ -0.725, 0.105, -0.681 ], "y_axis": [ -0.309, 0.834, 0.458 ], "z_axis": [ 0.615, 0.542, -0.572 ], "quaternion": [ 0.366, -0.058, 0.885, 0.283 ] } }, { "index": 1743, "index_chain": 1743, "chain_name": "A", "nt_resnum": 1821, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1821", "linked_nts": [ "///A/1820", "///A/1822" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end", "alpha": -40.822, "beta": 150.409, "gamma": 52.669, "delta": 78.924, "epsilon": -139.674, "zeta": -72.951, "epsilon_zeta": -66.723, "bb_type": "BI", "chi": -172.208, "glyco_bond": "anti", "C5prime_xyz": [ -1.386, 8.548, 1.231 ], "P_xyz": [ 1.205, 8.725, 1.117 ], "form": "A", "ssZp": 4.686, "Dp": 4.738, "splay_angle": 25.201, "splay_distance": 4.090, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 169.740, "theta": -135.118, "eta_prime": -165.794, "theta_prime": -136.132, "eta_base": -120.742, "theta_base": -113.113, "v0": 4.309, "v1": -27.444, "v2": 38.983, "v3": -37.542, "v4": 20.954, "amplitude": 39.940, "phase_angle": 12.566, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.204, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 225.179, 196.547, 196.338 ], "x_axis": [ -0.907, 0.420, 0.037 ], "y_axis": [ 0.190, 0.328, 0.925 ], "z_axis": [ 0.376, 0.846, -0.377 ], "quaternion": [ 0.105, 0.189, 0.808, 0.548 ] } }, { "index": 1744, "index_chain": 1744, "chain_name": "A", "nt_resnum": 1822, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1822", "linked_nts": [ "///A/1821", "///A/1823" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -54.057, "beta": 165.997, "gamma": 56.899, "delta": 77.611, "epsilon": -144.066, "zeta": -77.780, "epsilon_zeta": -66.286, "bb_type": "BI", "chi": -170.217, "glyco_bond": "anti", "C5prime_xyz": [ -1.742, 8.749, 1.064 ], "P_xyz": [ 0.752, 9.473, 1.318 ], "form": "A", "ssZp": 4.590, "Dp": 4.637, "splay_angle": 23.939, "splay_distance": 3.695, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 173.210, "theta": -146.682, "eta_prime": -170.621, "theta_prime": -143.283, "eta_base": -127.326, "theta_base": -98.101, "v0": -1.802, "v1": -22.179, "v2": 36.365, "v3": -38.427, "v4": 25.374, "amplitude": 39.006, "phase_angle": 21.206, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.840, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 224.466, 199.395, 193.491 ], "x_axis": [ -0.670, 0.485, 0.562 ], "y_axis": [ 0.666, 0.059, 0.743 ], "z_axis": [ 0.327, 0.872, -0.363 ], "quaternion": [ -0.081, 0.398, 0.723, 0.559 ] } }, { "index": 1745, "index_chain": 1745, "chain_name": "A", "nt_resnum": 1823, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1823", "linked_nts": [ "///A/1822", "///A/1824" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -52.675, "beta": 163.387, "gamma": 51.154, "delta": 83.706, "epsilon": -153.871, "zeta": -79.736, "epsilon_zeta": -74.135, "bb_type": "BI", "chi": -163.517, "glyco_bond": "anti", "C5prime_xyz": [ -1.296, 8.668, 0.760 ], "P_xyz": [ 1.304, 8.863, 1.036 ], "form": "A", "ssZp": 4.408, "Dp": 4.531, "splay_angle": 24.355, "splay_distance": 3.897, "splay_ratio": 0.213, "d22": 4.925, "d64": 5.000, "eta": 169.193, "theta": -152.257, "eta_prime": -173.008, "theta_prime": -154.439, "eta_base": -112.220, "theta_base": -149.875, "v0": 1.983, "v1": -22.969, "v2": 34.059, "v3": -33.845, "v4": 20.106, "amplitude": 35.338, "phase_angle": 15.464, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.806, "filter_rmsd": 0.105, "frame": { "rmsd": 0.008, "origin": [ 223.814, 203.015, 193.139 ], "x_axis": [ -0.025, 0.336, 0.942 ], "y_axis": [ 0.964, -0.242, 0.112 ], "z_axis": [ 0.266, 0.910, -0.317 ], "quaternion": [ -0.322, 0.619, 0.524, 0.487 ] } }, { "index": 1746, "index_chain": 1746, "chain_name": "A", "nt_resnum": 1824, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1824", "linked_nts": [ "///A/1823", "///A/1825" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -72.631, "beta": 176.002, "gamma": 55.846, "delta": 80.696, "epsilon": -152.580, "zeta": -70.830, "epsilon_zeta": -81.750, "bb_type": "BI", "chi": -161.740, "glyco_bond": "anti", "C5prime_xyz": [ -1.429, 8.778, 0.598 ], "P_xyz": [ 1.123, 9.311, 0.807 ], "form": "A", "ssZp": 4.449, "Dp": 4.592, "splay_angle": 25.241, "splay_distance": 3.940, "splay_ratio": 0.219, "d22": 4.052, "d64": 4.180, "eta": 165.537, "theta": -146.023, "eta_prime": 172.925, "theta_prime": -143.401, "eta_base": -170.053, "theta_base": -108.722, "v0": 0.310, "v1": -23.017, "v2": 35.657, "v3": -36.436, "v4": 22.776, "amplitude": 37.515, "phase_angle": 18.107, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.896, "filter_rmsd": 0.059, "frame": { "rmsd": 0.008, "origin": [ 222.686, 205.921, 190.800 ], "x_axis": [ 0.282, 0.107, 0.953 ], "y_axis": [ 0.929, -0.278, -0.244 ], "z_axis": [ 0.238, 0.955, -0.178 ], "quaternion": [ -0.455, 0.659, 0.393, 0.452 ] } }, { "index": 1747, "index_chain": 1747, "chain_name": "A", "nt_resnum": 1825, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1825", "linked_nts": [ "///A/1824", "///A/1826" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -63.152, "beta": 167.429, "gamma": 60.969, "delta": 83.484, "epsilon": -152.128, "zeta": -77.209, "epsilon_zeta": -74.919, "bb_type": "BI", "chi": -164.055, "glyco_bond": "anti", "C5prime_xyz": [ -1.431, 8.676, 0.779 ], "P_xyz": [ 1.163, 9.006, 0.846 ], "form": "A", "ssZp": 4.438, "Dp": 4.545, "splay_angle": 18.003, "splay_distance": 2.919, "splay_ratio": 0.159, "d22": 4.598, "d64": 4.309, "eta": 172.369, "theta": -148.665, "eta_prime": -169.696, "theta_prime": -150.602, "eta_base": -119.723, "theta_base": -144.757, "v0": 0.948, "v1": -22.380, "v2": 34.081, "v3": -34.495, "v4": 21.160, "amplitude": 35.663, "phase_angle": 17.129, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.879, "filter_rmsd": 0.103, "frame": { "rmsd": 0.007, "origin": [ 223.279, 209.661, 191.889 ], "x_axis": [ 0.778, -0.128, 0.615 ], "y_axis": [ 0.569, -0.271, -0.776 ], "z_axis": [ 0.266, 0.954, -0.138 ], "quaternion": [ 0.585, -0.739, -0.149, -0.298 ] } }, { "index": 1748, "index_chain": 1748, "chain_name": "A", "nt_resnum": 1826, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1826", "linked_nts": [ "///A/1825", "///A/1827" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor,phosphate", "alpha": -70.839, "beta": 177.478, "gamma": 52.607, "delta": 84.693, "epsilon": -155.819, "zeta": -70.103, "epsilon_zeta": -85.716, "bb_type": "BI", "chi": -149.200, "glyco_bond": "anti", "C5prime_xyz": [ -1.500, 8.819, -0.119 ], "P_xyz": [ 1.047, 9.386, 0.057 ], "form": ".", "ssZp": 3.993, "Dp": 4.429, "splay_angle": 16.841, "splay_distance": 2.735, "splay_ratio": 0.147, "d22": 4.207, "d64": 3.697, "eta": 165.692, "theta": -145.914, "eta_prime": 175.761, "theta_prime": -146.950, "eta_base": -165.656, "theta_base": -114.400, "v0": -0.803, "v1": -20.265, "v2": 32.339, "v3": -33.704, "v4": 21.772, "amplitude": 34.391, "phase_angle": 19.893, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.921, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 222.577, 212.386, 192.667 ], "x_axis": [ 0.900, -0.377, 0.218 ], "y_axis": [ 0.251, 0.040, -0.967 ], "z_axis": [ 0.356, 0.925, 0.131 ], "quaternion": [ 0.720, -0.658, 0.048, -0.218 ] } }, { "index": 1749, "index_chain": 1749, "chain_name": "A", "nt_resnum": 1827, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1827", "linked_nts": [ "///A/1826", "///A/1828" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,internal-loop,A-minor", "alpha": -73.574, "beta": 164.891, "gamma": 63.786, "delta": 82.031, "epsilon": -110.293, "zeta": -130.308, "epsilon_zeta": 20.016, "bb_type": "--", "chi": -145.511, "glyco_bond": "anti", "C5prime_xyz": [ -1.507, 8.765, -0.362 ], "P_xyz": [ 0.986, 9.179, -1.036 ], "form": ".", "ssZp": 3.422, "Dp": 4.642, "splay_angle": 56.538, "splay_distance": 9.498, "splay_ratio": 0.474, "d22": null, "d64": null, "eta": 173.882, "theta": -145.285, "eta_prime": -174.655, "theta_prime": -135.598, "eta_base": -132.350, "theta_base": -138.169, "v0": -0.035, "v1": -21.967, "v2": 34.334, "v3": -35.314, "v4": 22.317, "amplitude": 36.240, "phase_angle": 18.667, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.754, "filter_rmsd": 0.100, "frame": { "rmsd": 0.009, "origin": [ 224.181, 214.411, 193.562 ], "x_axis": [ 0.900, -0.298, -0.318 ], "y_axis": [ -0.153, 0.467, -0.871 ], "z_axis": [ 0.408, 0.832, 0.375 ], "quaternion": [ 0.828, -0.514, 0.219, -0.044 ] } }, { "index": 1750, "index_chain": 1750, "chain_name": "A", "nt_resnum": 1828, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1828", "linked_nts": [ "///A/1827", "///A/1829" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate", "alpha": 53.732, "beta": 170.017, "gamma": -31.288, "delta": 149.548, "epsilon": -91.653, "zeta": 104.676, "epsilon_zeta": 163.671, "bb_type": "--", "chi": -78.663, "glyco_bond": "anti", "C5prime_xyz": [ -2.632, 7.274, -2.806 ], "P_xyz": [ -1.494, 9.419, -3.760 ], "form": ".", "ssZp": 0.170, "Dp": 0.775, "splay_angle": 44.746, "splay_distance": 7.747, "splay_ratio": 0.381, "d22": null, "d64": null, "eta": -131.985, "theta": 126.418, "eta_prime": -130.869, "theta_prime": 102.619, "eta_base": -147.901, "theta_base": 84.554, "v0": -18.870, "v1": 34.219, "v2": -35.669, "v3": 25.695, "v4": -4.476, "amplitude": 36.439, "phase_angle": 168.208, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "7r", "suiteness": 0.010, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 228.157, 222.641, 196.149 ], "x_axis": [ 0.777, -0.533, -0.335 ], "y_axis": [ -0.280, 0.185, -0.942 ], "z_axis": [ 0.565, 0.825, -0.006 ], "quaternion": [ 0.699, -0.632, 0.322, -0.091 ] } }, { "index": 1751, "index_chain": 1751, "chain_name": "A", "nt_resnum": 1829, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1829", "linked_nts": [ "///A/1828", "///A/1830" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate,splayed-apart", "alpha": 73.613, "beta": 172.743, "gamma": 172.973, "delta": 149.922, "epsilon": -105.998, "zeta": 152.409, "epsilon_zeta": 101.593, "bb_type": "BII", "chi": -164.057, "glyco_bond": "anti", "C5prime_xyz": [ -1.623, 8.502, 1.216 ], "P_xyz": [ 0.511, 10.014, 0.942 ], "form": ".", "ssZp": 0.920, "Dp": 1.015, "splay_angle": 132.162, "splay_distance": 18.175, "splay_ratio": 0.914, "d22": null, "d64": null, "eta": 165.075, "theta": 124.672, "eta_prime": 141.769, "theta_prime": 96.550, "eta_base": 129.747, "theta_base": 84.142, "v0": -18.783, "v1": 34.393, "v2": -35.961, "v3": 26.068, "v4": -4.750, "amplitude": 36.688, "phase_angle": 168.579, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.007, "origin": [ 220.743, 221.150, 197.828 ], "x_axis": [ 0.675, -0.578, -0.459 ], "y_axis": [ -0.031, 0.599, -0.800 ], "z_axis": [ 0.738, 0.554, 0.386 ], "quaternion": [ 0.816, -0.415, 0.367, -0.168 ] } }, { "index": 1752, "index_chain": 1752, "chain_name": "A", "nt_resnum": 1830, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1830", "linked_nts": [ "///A/1829", "///A/1831" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,cap-donor,phosphate,splayed-apart", "alpha": 63.532, "beta": -142.975, "gamma": 50.561, "delta": 144.998, "epsilon": -163.360, "zeta": 28.765, "epsilon_zeta": 167.875, "bb_type": "--", "chi": -122.982, "glyco_bond": "anti", "C5prime_xyz": [ -1.977, 8.590, -1.068 ], "P_xyz": [ -0.175, 9.854, 0.345 ], "form": ".", "ssZp": 2.090, "Dp": 2.093, "splay_angle": 170.432, "splay_distance": 18.359, "splay_ratio": 0.997, "d22": null, "d64": null, "eta": 0.077, "theta": -13.363, "eta_prime": 6.129, "theta_prime": -50.535, "eta_base": 2.273, "theta_base": -111.766, "v0": -21.849, "v1": 35.283, "v2": -34.471, "v3": 22.729, "v4": -0.800, "amplitude": 36.158, "phase_angle": 162.425, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 209.472, 232.193, 188.807 ], "x_axis": [ 0.382, 0.908, -0.169 ], "y_axis": [ 0.754, -0.201, 0.625 ], "z_axis": [ 0.534, -0.366, -0.762 ], "quaternion": [ 0.324, 0.766, 0.543, 0.119 ] } }, { "index": 1753, "index_chain": 1753, "chain_name": "A", "nt_resnum": 1831, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1831", "linked_nts": [ "///A/1830", "///A/1832" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,phosphate,splayed-apart", "alpha": -97.777, "beta": -102.827, "gamma": 65.454, "delta": 142.030, "epsilon": -167.413, "zeta": -93.037, "epsilon_zeta": -74.376, "bb_type": "BI", "chi": -138.302, "glyco_bond": "anti", "C5prime_xyz": [ -1.886, 8.689, -0.299 ], "P_xyz": [ -0.301, 8.786, 1.806 ], "form": ".", "ssZp": 2.507, "Dp": 2.397, "splay_angle": 23.222, "splay_distance": 3.985, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": -144.543, "theta": -113.659, "eta_prime": -81.803, "theta_prime": -130.859, "eta_base": -6.919, "theta_base": -88.477, "v0": -22.357, "v1": 34.135, "v2": -32.056, "v3": 19.897, "v4": 1.422, "amplitude": 34.353, "phase_angle": 158.926, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 218.531, 217.484, 195.025 ], "x_axis": [ -0.289, 0.077, 0.954 ], "y_axis": [ -0.354, 0.917, -0.182 ], "z_axis": [ -0.889, -0.390, -0.237 ], "quaternion": [ 0.590, 0.089, -0.782, 0.183 ] } }, { "index": 1754, "index_chain": 1754, "chain_name": "A", "nt_resnum": 1832, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1832", "linked_nts": [ "///A/1831", "///A/1833" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,phosphate", "alpha": -71.868, "beta": -178.448, "gamma": 33.436, "delta": 79.239, "epsilon": -172.481, "zeta": -80.014, "epsilon_zeta": -92.467, "bb_type": "BI", "chi": -149.385, "glyco_bond": "anti", "C5prime_xyz": [ -1.709, 8.883, -0.179 ], "P_xyz": [ 0.541, 10.080, 0.368 ], "form": ".", "ssZp": 4.039, "Dp": 4.308, "splay_angle": 42.347, "splay_distance": 6.563, "splay_ratio": 0.361, "d22": null, "d64": null, "eta": 151.119, "theta": -135.941, "eta_prime": 164.370, "theta_prime": -128.874, "eta_base": -131.061, "theta_base": -83.125, "v0": -5.280, "v1": -17.969, "v2": 32.924, "v3": -36.976, "v4": 26.686, "amplitude": 36.855, "phase_angle": 26.704, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.044, "frame": { "rmsd": 0.017, "origin": [ 215.162, 215.361, 195.167 ], "x_axis": [ -0.479, 0.682, 0.552 ], "y_axis": [ 0.092, 0.665, -0.741 ], "z_axis": [ -0.873, -0.304, -0.381 ], "quaternion": [ -0.449, 0.244, 0.794, -0.329 ] } }, { "index": 1755, "index_chain": 1755, "chain_name": "A", "nt_resnum": 1833, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1833", "linked_nts": [ "///A/1832", "///A/1834" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": 169.598, "beta": -126.974, "gamma": 152.919, "delta": 84.210, "epsilon": -108.585, "zeta": -94.052, "epsilon_zeta": -14.533, "bb_type": "--", "chi": -173.256, "glyco_bond": "anti", "C5prime_xyz": [ -1.224, 8.560, 1.347 ], "P_xyz": [ 1.064, 8.879, 0.125 ], "form": ".", "ssZp": 4.453, "Dp": 4.641, "splay_angle": 21.522, "splay_distance": 3.949, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 176.756, "theta": -112.451, "eta_prime": -158.706, "theta_prime": -128.944, "eta_base": -101.055, "theta_base": -109.991, "v0": 2.761, "v1": -23.750, "v2": 34.520, "v3": -33.899, "v4": 19.666, "amplitude": 35.622, "phase_angle": 14.286, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.048, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 209.288, 217.968, 193.839 ], "x_axis": [ -0.082, 0.950, -0.302 ], "y_axis": [ 0.536, -0.214, -0.817 ], "z_axis": [ -0.840, -0.229, -0.492 ], "quaternion": [ -0.231, 0.637, 0.583, -0.448 ] } }, { "index": 1756, "index_chain": 1756, "chain_name": "A", "nt_resnum": 1834, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1834", "linked_nts": [ "///A/1833", "///A/1835" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": 84.012, "beta": -123.810, "gamma": -131.926, "delta": 83.851, "epsilon": -112.964, "zeta": -86.860, "epsilon_zeta": -26.104, "bb_type": "--", "chi": -175.866, "glyco_bond": "anti", "C5prime_xyz": [ -0.979, 8.358, 1.505 ], "P_xyz": [ -0.277, 10.617, 0.418 ], "form": "A", "ssZp": 4.651, "Dp": 4.768, "splay_angle": 24.443, "splay_distance": 4.076, "splay_ratio": 0.217, "d22": 4.397, "d64": 4.585, "eta": 168.583, "theta": -174.318, "eta_prime": -177.896, "theta_prime": -162.879, "eta_base": -131.676, "theta_base": -138.226, "v0": 6.582, "v1": -27.233, "v2": 36.513, "v3": -33.706, "v4": 17.135, "amplitude": 36.930, "phase_angle": 8.615, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.007, "origin": [ 205.777, 219.623, 193.107 ], "x_axis": [ 0.182, 0.732, -0.657 ], "y_axis": [ 0.419, -0.662, -0.621 ], "z_axis": [ -0.889, -0.162, -0.428 ], "quaternion": [ -0.152, 0.754, 0.382, -0.513 ] } }, { "index": 1757, "index_chain": 1757, "chain_name": "A", "nt_resnum": 1835, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1835", "linked_nts": [ "///A/1834", "///A/1836" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": -46.692, "beta": 166.431, "gamma": 34.330, "delta": 77.502, "epsilon": -160.552, "zeta": -76.540, "epsilon_zeta": -84.012, "bb_type": "BI", "chi": -159.020, "glyco_bond": "anti", "C5prime_xyz": [ -1.748, 8.895, 0.393 ], "P_xyz": [ 0.650, 9.789, 0.892 ], "form": "A", "ssZp": 4.363, "Dp": 4.504, "splay_angle": 24.366, "splay_distance": 4.030, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 155.330, "theta": -129.588, "eta_prime": 171.918, "theta_prime": -135.593, "eta_base": -155.897, "theta_base": -91.817, "v0": -3.581, "v1": -20.452, "v2": 35.352, "v3": -38.418, "v4": 26.484, "amplitude": 38.643, "phase_angle": 23.819, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.137, "filter_rmsd": 0.061, "frame": { "rmsd": 0.008, "origin": [ 202.120, 221.108, 192.088 ], "x_axis": [ 0.683, 0.330, -0.651 ], "y_axis": [ 0.219, -0.943, -0.249 ], "z_axis": [ -0.696, 0.027, -0.717 ], "quaternion": [ -0.075, 0.914, 0.150, -0.368 ] } }, { "index": 1758, "index_chain": 1758, "chain_name": "A", "nt_resnum": 1836, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1836", "linked_nts": [ "///A/1835", "///A/1837" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": 153.823, "beta": -154.323, "gamma": 166.727, "delta": 81.833, "epsilon": -110.847, "zeta": -69.811, "epsilon_zeta": -41.036, "bb_type": "--", "chi": 178.270, "glyco_bond": "anti", "C5prime_xyz": [ -1.216, 8.254, 1.765 ], "P_xyz": [ 0.664, 9.720, 0.681 ], "form": ".", "ssZp": 4.817, "Dp": 4.843, "splay_angle": 83.413, "splay_distance": 11.529, "splay_ratio": 0.665, "d22": null, "d64": null, "eta": 158.543, "theta": -105.869, "eta_prime": 176.308, "theta_prime": -157.916, "eta_base": -119.760, "theta_base": 149.238, "v0": 7.298, "v1": -28.760, "v2": 38.154, "v3": -34.945, "v4": 17.469, "amplitude": 38.522, "phase_angle": 7.929, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.693, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 201.961, 222.572, 188.337 ], "x_axis": [ 0.744, -0.395, -0.539 ], "y_axis": [ -0.358, -0.917, 0.177 ], "z_axis": [ -0.565, 0.061, -0.823 ], "quaternion": [ 0.031, 0.933, -0.202, -0.296 ] } }, { "index": 1759, "index_chain": 1759, "chain_name": "A", "nt_resnum": 1837, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1837", "linked_nts": [ "///A/1836", "///A/1838" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": 159.928, "beta": 142.025, "gamma": 54.868, "delta": 83.184, "epsilon": -115.530, "zeta": -77.399, "epsilon_zeta": -38.131, "bb_type": "--", "chi": -177.738, "glyco_bond": "anti", "C5prime_xyz": [ -1.502, 8.476, 1.544 ], "P_xyz": [ 1.114, 8.516, 1.668 ], "form": ".", "ssZp": 4.593, "Dp": 4.660, "splay_angle": 28.514, "splay_distance": 4.440, "splay_ratio": 0.246, "d22": null, "d64": null, "eta": -1.789, "theta": -120.444, "eta_prime": 42.169, "theta_prime": -120.980, "eta_base": 27.544, "theta_base": -77.364, "v0": 1.112, "v1": -22.504, "v2": 34.047, "v3": -34.357, "v4": 20.988, "amplitude": 35.574, "phase_angle": 16.846, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.447, "filter_rmsd": 0.104, "frame": { "rmsd": 0.006, "origin": [ 190.856, 225.580, 189.079 ], "x_axis": [ -0.350, -0.536, 0.769 ], "y_axis": [ 0.337, -0.837, -0.430 ], "z_axis": [ 0.874, 0.109, 0.474 ], "quaternion": [ -0.267, 0.503, -0.099, 0.816 ] } }, { "index": 1760, "index_chain": 1760, "chain_name": "A", "nt_resnum": 1838, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1838", "linked_nts": [ "///A/1837", "///A/1839" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,A-minor,ribose-zipper", "alpha": -76.636, "beta": 144.528, "gamma": 80.044, "delta": 84.036, "epsilon": -134.686, "zeta": -78.233, "epsilon_zeta": -56.453, "bb_type": "BI", "chi": -171.637, "glyco_bond": "anti", "C5prime_xyz": [ -1.474, 8.551, 1.208 ], "P_xyz": [ 1.011, 8.939, 0.467 ], "form": ".", "ssZp": 4.543, "Dp": 4.635, "splay_angle": 23.734, "splay_distance": 3.611, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 157.933, "theta": -137.594, "eta_prime": -174.770, "theta_prime": -142.082, "eta_base": -105.782, "theta_base": -95.458, "v0": 1.797, "v1": -23.130, "v2": 34.422, "v3": -34.333, "v4": 20.554, "amplitude": 35.772, "phase_angle": 15.791, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.326, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 193.156, 224.158, 192.601 ], "x_axis": [ 0.012, -0.989, 0.148 ], "y_axis": [ 0.545, -0.117, -0.830 ], "z_axis": [ 0.838, 0.090, 0.538 ], "quaternion": [ 0.598, -0.385, 0.289, -0.641 ] } }, { "index": 1761, "index_chain": 1761, "chain_name": "A", "nt_resnum": 1839, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1839", "linked_nts": [ "///A/1838", "///A/1840" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,A-minor,ribose-zipper,phosphate", "alpha": -69.863, "beta": 154.512, "gamma": 64.003, "delta": 86.047, "epsilon": -131.392, "zeta": -47.578, "epsilon_zeta": -83.815, "bb_type": "BI", "chi": -171.010, "glyco_bond": "anti", "C5prime_xyz": [ -1.227, 8.443, 1.192 ], "P_xyz": [ 1.380, 8.465, 0.930 ], "form": ".", "ssZp": 4.618, "Dp": 4.708, "splay_angle": 44.999, "splay_distance": 6.849, "splay_ratio": 0.383, "d22": null, "d64": null, "eta": 162.375, "theta": -101.158, "eta_prime": -177.648, "theta_prime": -100.482, "eta_base": -108.393, "theta_base": -60.793, "v0": 5.059, "v1": -25.206, "v2": 34.601, "v3": -32.641, "v4": 17.438, "amplitude": 35.194, "phase_angle": 10.540, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.642, "filter_rmsd": 0.040, "frame": { "rmsd": 0.012, "origin": [ 195.865, 222.605, 194.415 ], "x_axis": [ 0.412, -0.752, -0.514 ], "y_axis": [ 0.408, 0.657, -0.634 ], "z_axis": [ 0.815, 0.051, 0.577 ], "quaternion": [ 0.813, -0.211, 0.409, -0.357 ] } }, { "index": 1762, "index_chain": 1762, "chain_name": "A", "nt_resnum": 1840, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1840", "linked_nts": [ "///A/1839", "///A/1841" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": -76.103, "beta": 171.954, "gamma": 65.324, "delta": 83.617, "epsilon": -151.234, "zeta": -68.837, "epsilon_zeta": -82.396, "bb_type": "BI", "chi": -169.497, "glyco_bond": "anti", "C5prime_xyz": [ -1.311, 8.595, 1.082 ], "P_xyz": [ 1.294, 8.875, 1.214 ], "form": "A", "ssZp": 4.545, "Dp": 4.599, "splay_angle": 23.104, "splay_distance": 3.818, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 159.825, "theta": -141.088, "eta_prime": -163.848, "theta_prime": -142.989, "eta_base": -89.587, "theta_base": -128.893, "v0": 2.767, "v1": -23.887, "v2": 34.688, "v3": -34.060, "v4": 19.757, "amplitude": 35.793, "phase_angle": 14.275, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.445, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 202.189, 220.895, 192.416 ], "x_axis": [ 0.405, 0.375, -0.834 ], "y_axis": [ -0.294, 0.917, 0.269 ], "z_axis": [ 0.866, 0.136, 0.482 ], "quaternion": [ 0.837, 0.040, 0.508, 0.200 ] } }, { "index": 1763, "index_chain": 1763, "chain_name": "A", "nt_resnum": 1841, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1841", "linked_nts": [ "///A/1840", "///A/1842" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -72.875, "beta": 171.203, "gamma": 67.863, "delta": 81.358, "epsilon": -159.759, "zeta": -78.776, "epsilon_zeta": -80.983, "bb_type": "BI", "chi": -168.310, "glyco_bond": "anti", "C5prime_xyz": [ -1.893, 8.820, 0.925 ], "P_xyz": [ 0.574, 9.622, 1.211 ], "form": "A", "ssZp": 4.308, "Dp": 4.351, "splay_angle": 23.035, "splay_distance": 3.707, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 171.059, "theta": -159.197, "eta_prime": -172.271, "theta_prime": -159.935, "eta_base": -140.592, "theta_base": -143.050, "v0": -5.727, "v1": -16.902, "v2": 31.648, "v3": -35.872, "v4": 26.256, "amplitude": 35.717, "phase_angle": 27.615, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.627, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 205.656, 219.418, 193.026 ], "x_axis": [ 0.177, 0.734, -0.655 ], "y_axis": [ -0.418, 0.659, 0.625 ], "z_axis": [ 0.891, 0.163, 0.424 ], "quaternion": [ 0.752, 0.154, 0.514, 0.383 ] } }, { "index": 1764, "index_chain": 1764, "chain_name": "A", "nt_resnum": 1842, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1842", "linked_nts": [ "///A/1841", "///A/1843" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": -72.401, "beta": 172.574, "gamma": 66.367, "delta": 86.664, "epsilon": -143.446, "zeta": -51.827, "epsilon_zeta": -91.619, "bb_type": "BI", "chi": -162.877, "glyco_bond": "anti", "C5prime_xyz": [ -1.543, 8.840, 0.650 ], "P_xyz": [ 1.009, 9.346, 0.995 ], "form": ".", "ssZp": 4.111, "Dp": 4.308, "splay_angle": 31.163, "splay_distance": 5.094, "splay_ratio": 0.269, "d22": null, "d64": null, "eta": 177.246, "theta": -117.062, "eta_prime": -173.865, "theta_prime": -116.129, "eta_base": -148.795, "theta_base": -66.842, "v0": -4.663, "v1": -15.466, "v2": 28.390, "v3": -31.881, "v4": 23.039, "amplitude": 31.804, "phase_angle": 26.790, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.633, "filter_rmsd": 0.063, "frame": { "rmsd": 0.009, "origin": [ 209.079, 218.076, 193.498 ], "x_axis": [ -0.030, 0.955, -0.296 ], "y_axis": [ -0.426, 0.256, 0.868 ], "z_axis": [ 0.904, 0.153, 0.399 ], "quaternion": [ 0.637, 0.281, 0.471, 0.542 ] } }, { "index": 1765, "index_chain": 1765, "chain_name": "A", "nt_resnum": 1843, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1843", "linked_nts": [ "///A/1842", "///A/1844" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -79.633, "beta": 172.115, "gamma": 63.994, "delta": 82.696, "epsilon": -134.131, "zeta": 40.351, "epsilon_zeta": 185.517, "bb_type": "--", "chi": -146.209, "glyco_bond": "anti", "C5prime_xyz": [ -1.631, 8.859, -0.339 ], "P_xyz": [ 0.868, 9.477, -0.786 ], "form": ".", "ssZp": 3.749, "Dp": 4.539, "splay_angle": 23.235, "splay_distance": 3.834, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 163.334, "theta": -23.230, "eta_prime": -168.716, "theta_prime": -63.626, "eta_base": -100.821, "theta_base": -106.488, "v0": -3.643, "v1": -18.439, "v2": 32.123, "v3": -35.129, "v4": 24.496, "amplitude": 35.271, "phase_angle": 24.392, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.552, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 211.458, 222.290, 195.091 ], "x_axis": [ -0.379, 0.750, 0.542 ], "y_axis": [ -0.074, -0.609, 0.790 ], "z_axis": [ 0.922, 0.259, 0.287 ], "quaternion": [ 0.273, 0.486, 0.348, 0.754 ] } }, { "index": 1766, "index_chain": 1766, "chain_name": "A", "nt_resnum": 1844, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1844", "linked_nts": [ "///A/1843", "///A/1845" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": 171.226, "beta": 138.488, "gamma": 57.070, "delta": 146.293, "epsilon": -87.660, "zeta": 157.766, "epsilon_zeta": 114.575, "bb_type": "BII", "chi": -136.990, "glyco_bond": "anti", "C5prime_xyz": [ -1.752, 8.677, -0.300 ], "P_xyz": [ 0.792, 8.579, 0.274 ], "form": ".", "ssZp": 0.644, "Dp": 0.678, "splay_angle": 91.746, "splay_distance": 14.817, "splay_ratio": 0.718, "d22": null, "d64": null, "eta": 56.746, "theta": -173.763, "eta_prime": 122.718, "theta_prime": 162.231, "eta_base": 117.282, "theta_base": 160.007, "v0": -21.246, "v1": 35.041, "v2": -34.736, "v3": 23.368, "v4": -1.554, "amplitude": 36.200, "phase_angle": 163.648, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.671, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 213.849, 223.718, 197.726 ], "x_axis": [ 0.367, -0.441, -0.819 ], "y_axis": [ 0.161, -0.837, 0.523 ], "z_axis": [ -0.916, -0.324, -0.236 ], "quaternion": [ 0.271, 0.781, -0.090, -0.555 ] } }, { "index": 1767, "index_chain": 1767, "chain_name": "A", "nt_resnum": 1845, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1845", "linked_nts": [ "///A/1844", "///A/1846" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,internal-loop,splayed-apart", "alpha": -59.807, "beta": 113.388, "gamma": 153.287, "delta": 83.802, "epsilon": -139.945, "zeta": 144.854, "epsilon_zeta": 75.200, "bb_type": "--", "chi": -173.808, "glyco_bond": "anti", "C5prime_xyz": [ -1.474, 8.505, 1.341 ], "P_xyz": [ -0.999, 10.507, -0.268 ], "form": ".", "ssZp": 4.555, "Dp": 4.604, "splay_angle": 119.283, "splay_distance": 15.069, "splay_ratio": 0.863, "d22": null, "d64": null, "eta": -55.953, "theta": 26.338, "eta_prime": -71.173, "theta_prime": 41.986, "eta_base": -65.286, "theta_base": 81.990, "v0": 1.531, "v1": -22.231, "v2": 33.228, "v3": -33.325, "v4": 20.103, "amplitude": 34.598, "phase_angle": 16.176, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 211.475, 228.754, 211.457 ], "x_axis": [ -0.280, -0.369, 0.886 ], "y_axis": [ 0.083, -0.929, -0.361 ], "z_axis": [ 0.956, -0.028, 0.291 ], "quaternion": [ -0.143, 0.583, -0.123, 0.790 ] } }, { "index": 1768, "index_chain": 1768, "chain_name": "A", "nt_resnum": 1846, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1846", "linked_nts": [ "///A/1845", "///A/1847" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate,splayed-apart", "alpha": -81.865, "beta": 150.684, "gamma": 41.635, "delta": 83.304, "epsilon": -154.329, "zeta": -59.115, "epsilon_zeta": -95.214, "bb_type": "BI", "chi": 170.522, "glyco_bond": "anti", "C5prime_xyz": [ -1.681, 8.198, 2.136 ], "P_xyz": [ 0.745, 8.037, 3.111 ], "form": "A", "ssZp": 4.332, "Dp": 4.537, "splay_angle": 24.428, "splay_distance": 3.933, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 164.274, "theta": -130.968, "eta_prime": 173.780, "theta_prime": -125.060, "eta_base": 164.476, "theta_base": -107.764, "v0": 1.895, "v1": -23.376, "v2": 34.618, "v3": -34.519, "v4": 20.611, "amplitude": 35.952, "phase_angle": 15.656, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "9a", "suiteness": 0.551, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 217.412, 223.771, 198.535 ], "x_axis": [ -0.685, 0.724, 0.081 ], "y_axis": [ -0.209, -0.302, 0.930 ], "z_axis": [ 0.698, 0.620, 0.358 ], "quaternion": [ 0.305, 0.254, 0.506, 0.766 ] } }, { "index": 1769, "index_chain": 1769, "chain_name": "A", "nt_resnum": 1847, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1847", "linked_nts": [ "///A/1846", "///A/1848" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -79.119, "beta": -162.678, "gamma": 71.029, "delta": 146.363, "epsilon": -160.634, "zeta": 143.638, "epsilon_zeta": 55.728, "bb_type": "--", "chi": -138.642, "glyco_bond": "anti", "C5prime_xyz": [ -2.020, 8.712, -0.253 ], "P_xyz": [ 0.162, 9.418, 1.013 ], "form": ".", "ssZp": 1.834, "Dp": 2.054, "splay_angle": 78.474, "splay_distance": 11.456, "splay_ratio": 0.633, "d22": null, "d64": null, "eta": 175.966, "theta": 123.484, "eta_prime": -147.610, "theta_prime": 122.467, "eta_base": -116.430, "theta_base": 139.092, "v0": -23.338, "v1": 36.949, "v2": -35.674, "v3": 23.142, "v4": -0.095, "amplitude": 37.651, "phase_angle": 161.353, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.459, "filter_rmsd": 0.100, "frame": { "rmsd": 0.009, "origin": [ 219.561, 226.891, 197.478 ], "x_axis": [ -0.726, 0.378, 0.575 ], "y_axis": [ 0.241, -0.643, 0.727 ], "z_axis": [ 0.645, 0.666, 0.376 ], "quaternion": [ 0.041, 0.368, 0.420, 0.828 ] } }, { "index": 1770, "index_chain": 1770, "chain_name": "A", "nt_resnum": 1848, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1848", "linked_nts": [ "///A/1847", "///A/1849" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop,cap-donor,phosphate,splayed-apart", "alpha": -67.649, "beta": 161.557, "gamma": 74.839, "delta": 149.185, "epsilon": -127.079, "zeta": 93.810, "epsilon_zeta": 139.111, "bb_type": "--", "chi": -134.789, "glyco_bond": "anti", "C5prime_xyz": [ -1.786, 8.645, -0.389 ], "P_xyz": [ 0.794, 8.914, -0.075 ], "form": ".", "ssZp": 1.473, "Dp": 1.476, "splay_angle": 158.620, "splay_distance": 18.604, "splay_ratio": 0.983, "d22": null, "d64": null, "eta": -147.435, "theta": 116.295, "eta_prime": -142.920, "theta_prime": 50.191, "eta_base": -169.589, "theta_base": -21.059, "v0": -20.795, "v1": 35.934, "v2": -36.469, "v3": 25.406, "v4": -3.084, "amplitude": 37.605, "phase_angle": 165.878, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 225.259, 219.420, 190.924 ], "x_axis": [ -0.440, 0.896, -0.056 ], "y_axis": [ 0.212, 0.164, 0.963 ], "z_axis": [ 0.872, 0.412, -0.263 ], "quaternion": [ 0.340, 0.406, 0.683, 0.503 ] } }, { "index": 1771, "index_chain": 1771, "chain_name": "A", "nt_resnum": 1849, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1849", "linked_nts": [ "///A/1848", "///A/1850" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,internal-loop,splayed-apart", "alpha": 57.495, "beta": 173.571, "gamma": 80.180, "delta": 151.302, "epsilon": -82.582, "zeta": -43.458, "epsilon_zeta": -39.125, "bb_type": "--", "chi": -141.256, "glyco_bond": "anti", "C5prime_xyz": [ -1.992, 8.669, -0.043 ], "P_xyz": [ 0.474, 9.100, 0.722 ], "form": ".", "ssZp": 0.224, "Dp": 0.347, "splay_angle": 114.930, "splay_distance": 15.955, "splay_ratio": 0.843, "d22": null, "d64": null, "eta": 16.955, "theta": -15.250, "eta_prime": 41.456, "theta_prime": -37.975, "eta_base": 98.100, "theta_base": -4.883, "v0": -21.842, "v1": 37.533, "v2": -38.002, "v3": 26.413, "v4": -3.124, "amplitude": 39.219, "phase_angle": 165.688, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.138, "filter_rmsd": 0.100, "frame": { "rmsd": 0.007, "origin": [ 235.462, 215.711, 206.031 ], "x_axis": [ 0.771, 0.383, -0.509 ], "y_axis": [ -0.523, -0.076, -0.849 ], "z_axis": [ -0.364, 0.920, 0.142 ], "quaternion": [ 0.678, -0.653, 0.053, 0.334 ] } }, { "index": 1772, "index_chain": 1772, "chain_name": "A", "nt_resnum": 1850, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1850", "linked_nts": [ "///A/1849", "///A/1851" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop,A-minor,cap-acceptor,splayed-apart", "alpha": -82.715, "beta": -162.850, "gamma": 50.611, "delta": 84.738, "epsilon": -174.225, "zeta": -78.373, "epsilon_zeta": -95.852, "bb_type": "BI", "chi": -167.368, "glyco_bond": "anti", "C5prime_xyz": [ -1.275, 8.565, 1.008 ], "P_xyz": [ 1.058, 8.756, 2.171 ], "form": "A", "ssZp": 4.297, "Dp": 4.352, "splay_angle": 23.966, "splay_distance": 3.785, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 136.746, "theta": -143.781, "eta_prime": -177.079, "theta_prime": -146.368, "eta_base": -157.953, "theta_base": -131.050, "v0": 2.645, "v1": -23.149, "v2": 33.655, "v3": -33.109, "v4": 19.240, "amplitude": 34.743, "phase_angle": 14.379, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.410, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 224.782, 215.230, 194.187 ], "x_axis": [ 0.883, -0.435, -0.179 ], "y_axis": [ 0.205, 0.015, 0.979 ], "z_axis": [ -0.423, -0.900, 0.103 ], "quaternion": [ 0.707, 0.664, -0.086, -0.226 ] } }, { "index": 1773, "index_chain": 1773, "chain_name": "A", "nt_resnum": 1851, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1851", "linked_nts": [ "///A/1850", "///A/1852" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor", "alpha": -162.945, "beta": -152.987, "gamma": 124.111, "delta": 77.429, "epsilon": -135.393, "zeta": -89.202, "epsilon_zeta": -46.191, "bb_type": "BI", "chi": 179.591, "glyco_bond": "anti", "C5prime_xyz": [ -1.668, 8.459, 1.697 ], "P_xyz": [ 0.817, 9.172, 1.334 ], "form": "A", "ssZp": 4.689, "Dp": 4.718, "splay_angle": 24.113, "splay_distance": 3.845, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 155.504, "theta": -152.886, "eta_prime": 168.102, "theta_prime": -154.517, "eta_base": -161.166, "theta_base": -140.921, "v0": 2.954, "v1": -26.447, "v2": 38.693, "v3": -38.037, "v4": 22.067, "amplitude": 39.958, "phase_angle": 14.458, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 222.525, 212.679, 192.537 ], "x_axis": [ 0.918, -0.293, 0.267 ], "y_axis": [ -0.210, 0.211, 0.955 ], "z_axis": [ -0.337, -0.932, 0.132 ], "quaternion": [ 0.752, 0.627, -0.201, -0.028 ] } }, { "index": 1774, "index_chain": 1774, "chain_name": "A", "nt_resnum": 1852, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1852", "linked_nts": [ "///A/1851", "///A/1853" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -52.540, "beta": 163.317, "gamma": 53.855, "delta": 80.140, "epsilon": -147.056, "zeta": -73.427, "epsilon_zeta": -73.629, "bb_type": "BI", "chi": -173.004, "glyco_bond": "anti", "C5prime_xyz": [ -1.691, 8.685, 1.238 ], "P_xyz": [ 0.810, 9.204, 1.754 ], "form": "A", "ssZp": 4.516, "Dp": 4.552, "splay_angle": 21.616, "splay_distance": 3.480, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 173.097, "theta": -144.351, "eta_prime": -177.727, "theta_prime": -144.661, "eta_base": -151.271, "theta_base": -115.497, "v0": -2.062, "v1": -20.721, "v2": 34.289, "v3": -36.468, "v4": 24.339, "amplitude": 36.922, "phase_angle": 21.771, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.648, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 221.989, 209.460, 190.503 ], "x_axis": [ 0.752, -0.052, 0.657 ], "y_axis": [ -0.613, 0.309, 0.727 ], "z_axis": [ -0.241, -0.949, 0.201 ], "quaternion": [ 0.752, 0.557, -0.299, 0.186 ] } }, { "index": 1775, "index_chain": 1775, "chain_name": "A", "nt_resnum": 1853, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1853", "linked_nts": [ "///A/1852", "///A/1854" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -62.950, "beta": 170.264, "gamma": 50.517, "delta": 79.700, "epsilon": -156.449, "zeta": -71.460, "epsilon_zeta": -84.988, "bb_type": "BI", "chi": -168.289, "glyco_bond": "anti", "C5prime_xyz": [ -1.605, 8.716, 0.967 ], "P_xyz": [ 0.909, 9.301, 1.384 ], "form": "A", "ssZp": 4.548, "Dp": 4.572, "splay_angle": 25.033, "splay_distance": 4.038, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 162.637, "theta": -151.255, "eta_prime": 177.619, "theta_prime": -150.418, "eta_base": -135.293, "theta_base": -132.624, "v0": 0.045, "v1": -23.058, "v2": 35.995, "v3": -36.963, "v4": 23.262, "amplitude": 37.962, "phase_angle": 18.525, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.973, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 222.853, 206.088, 190.519 ], "x_axis": [ 0.276, 0.167, 0.947 ], "y_axis": [ -0.937, 0.267, 0.226 ], "z_axis": [ -0.215, -0.949, 0.230 ], "quaternion": [ 0.666, 0.441, -0.436, 0.415 ] } }, { "index": 1776, "index_chain": 1776, "chain_name": "A", "nt_resnum": 1854, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1854", "linked_nts": [ "///A/1853", "///A/1855" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -70.225, "beta": -176.769, "gamma": 54.315, "delta": 82.275, "epsilon": -153.408, "zeta": -72.288, "epsilon_zeta": -81.120, "bb_type": "BI", "chi": -170.841, "glyco_bond": "anti", "C5prime_xyz": [ -1.767, 8.700, 1.116 ], "P_xyz": [ 0.604, 9.304, 2.030 ], "form": "A", "ssZp": 4.443, "Dp": 4.475, "splay_angle": 23.406, "splay_distance": 3.725, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 171.152, "theta": -148.210, "eta_prime": -179.695, "theta_prime": -145.966, "eta_base": -150.952, "theta_base": -113.695, "v0": -2.943, "v1": -19.106, "v2": 32.525, "v3": -35.159, "v4": 24.060, "amplitude": 35.406, "phase_angle": 23.274, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.914, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 224.284, 202.343, 190.996 ], "x_axis": [ -0.119, 0.528, 0.841 ], "y_axis": [ -0.940, 0.214, -0.267 ], "z_axis": [ -0.321, -0.822, 0.470 ], "quaternion": [ 0.626, 0.222, -0.464, 0.586 ] } }, { "index": 1777, "index_chain": 1777, "chain_name": "A", "nt_resnum": 1855, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1855", "linked_nts": [ "///A/1854", "///A/1856" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -67.084, "beta": 171.752, "gamma": 58.110, "delta": 82.578, "epsilon": -149.478, "zeta": -69.090, "epsilon_zeta": -80.388, "bb_type": "BI", "chi": -167.654, "glyco_bond": "anti", "C5prime_xyz": [ -1.475, 8.750, 0.944 ], "P_xyz": [ 1.055, 9.191, 1.397 ], "form": "A", "ssZp": 4.425, "Dp": 4.506, "splay_angle": 24.504, "splay_distance": 3.981, "splay_ratio": 0.214, "d22": 4.345, "d64": 4.571, "eta": 170.551, "theta": -140.566, "eta_prime": -175.400, "theta_prime": -139.507, "eta_base": -130.111, "theta_base": -112.670, "v0": -1.859, "v1": -20.099, "v2": 33.082, "v3": -35.110, "v4": 23.320, "amplitude": 35.566, "phase_angle": 21.541, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.946, "filter_rmsd": 0.062, "frame": { "rmsd": 0.006, "origin": [ 224.512, 199.684, 193.595 ], "x_axis": [ -0.648, 0.563, 0.513 ], "y_axis": [ -0.676, -0.116, -0.727 ], "z_axis": [ -0.350, -0.818, 0.456 ], "quaternion": [ 0.416, 0.055, -0.519, 0.745 ] } }, { "index": 1778, "index_chain": 1778, "chain_name": "A", "nt_resnum": 1856, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1856", "linked_nts": [ "///A/1855", "///A/1857" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end", "alpha": -64.905, "beta": 171.056, "gamma": 59.802, "delta": 82.334, "epsilon": 179.889, "zeta": -79.723, "epsilon_zeta": -100.388, "bb_type": "BI", "chi": -161.400, "glyco_bond": "anti", "C5prime_xyz": [ -1.726, 8.807, 0.556 ], "P_xyz": [ 0.773, 9.505, 0.832 ], "form": ".", "ssZp": 4.098, "Dp": 4.170, "splay_angle": 27.572, "splay_distance": 4.308, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": 169.510, "theta": -133.471, "eta_prime": -169.234, "theta_prime": -130.768, "eta_base": -124.988, "theta_base": -80.792, "v0": -4.247, "v1": -17.498, "v2": 31.167, "v3": -34.556, "v4": 24.498, "amplitude": 34.537, "phase_angle": 25.525, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.921, "filter_rmsd": 0.101, "frame": { "rmsd": 0.009, "origin": [ 223.521, 197.484, 196.761 ], "x_axis": [ -0.904, 0.427, 0.018 ], "y_axis": [ -0.210, -0.408, -0.888 ], "z_axis": [ -0.372, -0.807, 0.459 ], "quaternion": [ 0.191, -0.106, -0.509, 0.832 ] } }, { "index": 1779, "index_chain": 1779, "chain_name": "A", "nt_resnum": 1857, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1857", "linked_nts": [ "///A/1856", "///A/1858" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart", "alpha": 161.646, "beta": -131.657, "gamma": 170.053, "delta": 147.091, "epsilon": -87.872, "zeta": -129.977, "epsilon_zeta": 42.105, "bb_type": "--", "chi": -153.481, "glyco_bond": "anti", "C5prime_xyz": [ -1.852, 8.700, 0.628 ], "P_xyz": [ 0.652, 9.108, -0.007 ], "form": ".", "ssZp": 0.548, "Dp": 0.612, "splay_angle": 121.598, "splay_distance": 17.272, "splay_ratio": 0.873, "d22": null, "d64": null, "eta": -128.330, "theta": -165.297, "eta_prime": -118.157, "theta_prime": -152.490, "eta_base": -63.800, "theta_base": -144.640, "v0": -21.312, "v1": 35.744, "v2": -35.759, "v3": 24.391, "v4": -2.166, "amplitude": 37.107, "phase_angle": 164.510, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.350, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 219.814, 195.588, 197.865 ], "x_axis": [ -0.729, -0.042, -0.683 ], "y_axis": [ 0.540, -0.648, -0.537 ], "z_axis": [ -0.420, -0.760, 0.496 ], "quaternion": [ -0.172, -0.325, -0.383, 0.848 ] } }, { "index": 1780, "index_chain": 1780, "chain_name": "A", "nt_resnum": 1858, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1858", "linked_nts": [ "///A/1857", "///A/1859" ], "nt_type": "RNA", "dbn": "}", "summary": "pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,splayed-apart", "alpha": -83.806, "beta": 150.926, "gamma": 131.042, "delta": 85.270, "epsilon": -120.067, "zeta": -61.754, "epsilon_zeta": -58.313, "bb_type": "--", "chi": 157.071, "glyco_bond": "anti", "C5prime_xyz": [ -2.027, 7.722, 2.692 ], "P_xyz": [ 0.013, 9.350, 2.753 ], "form": ".", "ssZp": 4.221, "Dp": 4.542, "splay_angle": 32.966, "splay_distance": 5.518, "splay_ratio": 0.296, "d22": null, "d64": null, "eta": -116.199, "theta": -98.739, "eta_prime": -105.240, "theta_prime": -108.397, "eta_base": -80.696, "theta_base": -54.286, "v0": 0.089, "v1": -20.332, "v2": 31.643, "v3": -32.517, "v4": 20.449, "amplitude": 33.363, "phase_angle": 18.479, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.012, "origin": [ 231.829, 186.581, 206.399 ], "x_axis": [ 0.039, -0.905, -0.423 ], "y_axis": [ -0.606, 0.315, -0.730 ], "z_axis": [ 0.794, 0.286, -0.536 ], "quaternion": [ 0.452, -0.561, 0.673, -0.165 ] } }, { "index": 1781, "index_chain": 1781, "chain_name": "A", "nt_resnum": 1859, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1859", "linked_nts": [ "///A/1858", "///A/1860" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate", "alpha": 149.974, "beta": -158.441, "gamma": 164.887, "delta": 80.906, "epsilon": -132.518, "zeta": -102.541, "epsilon_zeta": -29.977, "bb_type": "--", "chi": -173.621, "glyco_bond": "anti", "C5prime_xyz": [ -1.555, 8.658, 1.308 ], "P_xyz": [ 0.321, 10.132, 0.260 ], "form": ".", "ssZp": 4.505, "Dp": 4.589, "splay_angle": 27.892, "splay_distance": 4.501, "splay_ratio": 0.243, "d22": null, "d64": null, "eta": 133.420, "theta": -135.953, "eta_prime": 171.013, "theta_prime": -140.789, "eta_base": -102.742, "theta_base": -99.751, "v0": -1.069, "v1": -21.168, "v2": 34.108, "v3": -35.711, "v4": 23.127, "amplitude": 36.357, "phase_angle": 20.256, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.127, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 233.953, 184.124, 201.939 ], "x_axis": [ -0.565, -0.073, -0.822 ], "y_axis": [ -0.228, 0.971, 0.070 ], "z_axis": [ 0.793, 0.227, -0.566 ], "quaternion": [ 0.458, -0.086, 0.881, 0.084 ] } }, { "index": 1782, "index_chain": 1782, "chain_name": "A", "nt_resnum": 1860, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1860", "linked_nts": [ "///A/1859", "///A/1861" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": 146.175, "beta": -127.435, "gamma": 167.429, "delta": 78.922, "epsilon": -121.101, "zeta": -69.788, "epsilon_zeta": -51.313, "bb_type": "--", "chi": -178.832, "glyco_bond": "anti", "C5prime_xyz": [ -1.491, 8.486, 1.584 ], "P_xyz": [ 0.386, 9.543, 0.111 ], "form": ".", "ssZp": 4.749, "Dp": 4.781, "splay_angle": 31.598, "splay_distance": 4.730, "splay_ratio": 0.272, "d22": null, "d64": null, "eta": 152.255, "theta": -132.069, "eta_prime": 177.728, "theta_prime": -134.326, "eta_base": -120.754, "theta_base": -81.018, "v0": 2.692, "v1": -25.829, "v2": 37.884, "v3": -37.366, "v4": 21.873, "amplitude": 39.177, "phase_angle": 14.759, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.068, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 235.313, 184.500, 197.665 ], "x_axis": [ -0.599, 0.607, -0.522 ], "y_axis": [ 0.291, 0.772, 0.564 ], "z_axis": [ 0.746, 0.186, -0.640 ], "quaternion": [ 0.365, 0.259, 0.868, 0.216 ] } }, { "index": 1783, "index_chain": 1783, "chain_name": "A", "nt_resnum": 1861, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1861", "linked_nts": [ "///A/1860", "///A/1862" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": -67.475, "beta": -171.477, "gamma": 37.461, "delta": 91.616, "epsilon": -111.133, "zeta": -140.637, "epsilon_zeta": 29.505, "bb_type": "--", "chi": -159.830, "glyco_bond": "anti", "C5prime_xyz": [ -0.795, 8.453, 0.587 ], "P_xyz": [ 1.700, 8.411, 1.423 ], "form": ".", "ssZp": 4.208, "Dp": 4.765, "splay_angle": 12.570, "splay_distance": 2.292, "splay_ratio": 0.132, "d22": 5.083, "d64": 3.843, "eta": 166.265, "theta": -165.112, "eta_prime": -177.227, "theta_prime": -156.170, "eta_base": -109.941, "theta_base": -178.235, "v0": 13.826, "v1": -31.835, "v2": 36.681, "v3": -29.747, "v4": 10.192, "amplitude": 36.729, "phase_angle": 357.098, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.303, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 235.670, 188.154, 194.683 ], "x_axis": [ -0.252, 0.770, 0.586 ], "y_axis": [ 0.776, -0.201, 0.598 ], "z_axis": [ 0.578, 0.605, -0.547 ], "quaternion": [ -0.003, 0.612, 0.632, 0.476 ] } }, { "index": 1784, "index_chain": 1784, "chain_name": "A", "nt_resnum": 1862, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1862", "linked_nts": [ "///A/1861", "///A/1863" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -32.714, "beta": 113.348, "gamma": 40.872, "delta": 81.820, "epsilon": -165.257, "zeta": -80.077, "epsilon_zeta": -85.181, "bb_type": "BI", "chi": -122.963, "glyco_bond": "anti", "C5prime_xyz": [ -1.615, 8.502, -1.642 ], "P_xyz": [ 0.709, 7.614, -2.491 ], "form": ".", "ssZp": 2.889, "Dp": 4.479, "splay_angle": 38.253, "splay_distance": 6.344, "splay_ratio": 0.328, "d22": 4.880, "d64": 5.621, "eta": 156.846, "theta": -145.728, "eta_prime": 170.697, "theta_prime": -156.963, "eta_base": 156.835, "theta_base": -156.270, "v0": 0.129, "v1": -23.967, "v2": 37.326, "v3": -38.233, "v4": 24.087, "amplitude": 39.338, "phase_angle": 18.404, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.056, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 237.320, 187.648, 193.174 ], "x_axis": [ -0.070, 0.837, 0.542 ], "y_axis": [ 0.998, 0.064, 0.030 ], "z_axis": [ -0.010, 0.543, -0.840 ], "quaternion": [ -0.196, 0.653, 0.702, 0.204 ] } }, { "index": 1785, "index_chain": 1785, "chain_name": "A", "nt_resnum": 1863, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1863", "linked_nts": [ "///A/1862", "///A/1864" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -55.503, "beta": 167.000, "gamma": 64.731, "delta": 78.615, "epsilon": -139.489, "zeta": -138.904, "epsilon_zeta": -0.585, "bb_type": "--", "chi": -154.120, "glyco_bond": "anti", "C5prime_xyz": [ -1.814, 8.880, 0.117 ], "P_xyz": [ 0.644, 9.680, -0.271 ], "form": ".", "ssZp": 4.145, "Dp": 4.583, "splay_angle": 125.754, "splay_distance": 17.087, "splay_ratio": 0.890, "d22": null, "d64": null, "eta": -173.514, "theta": 153.764, "eta_prime": -166.962, "theta_prime": 136.968, "eta_base": -154.495, "theta_base": 99.477, "v0": -3.782, "v1": -19.813, "v2": 34.475, "v3": -37.665, "v4": 26.129, "amplitude": 37.807, "phase_angle": 24.235, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.636, "filter_rmsd": 0.100, "frame": { "rmsd": 0.006, "origin": [ 237.395, 191.039, 187.813 ], "x_axis": [ 0.096, 0.705, 0.703 ], "y_axis": [ 0.938, -0.300, 0.173 ], "z_axis": [ 0.332, 0.643, -0.690 ], "quaternion": [ -0.163, 0.722, 0.569, 0.358 ] } }, { "index": 1786, "index_chain": 1786, "chain_name": "A", "nt_resnum": 1864, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1864", "linked_nts": [ "///A/1863", null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "break,~C2'-endo,non-stack,ss-non-loop,splayed-apart", "alpha": -49.171, "beta": 165.471, "gamma": -63.520, "delta": 146.236, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -41.502, "glyco_bond": "--", "C5prime_xyz": [ -4.029, 5.752, -3.034 ], "P_xyz": [ -4.525, 6.947, -5.310 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": -22.232, "v1": 35.829, "v2": -35.003, "v3": 23.073, "v4": -0.707, "amplitude": 36.733, "phase_angle": 162.348, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 248.772, 181.010, 179.944 ], "x_axis": [ -0.426, -0.851, 0.308 ], "y_axis": [ -0.873, 0.476, 0.109 ], "z_axis": [ -0.239, -0.222, -0.945 ], "quaternion": [ -0.162, -0.511, 0.844, -0.034 ] } }, { "index": 1787, "index_chain": 1787, "chain_name": "A", "nt_resnum": 1866, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1866", "linked_nts": [ null, "///A/1867" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-pair-contact,ss-non-loop,cap-donor,phosphate", "alpha": null, "beta": -94.192, "gamma": -68.382, "delta": 79.251, "epsilon": -167.272, "zeta": -99.667, "epsilon_zeta": -67.605, "bb_type": "BI", "chi": -136.266, "glyco_bond": "anti", "C5prime_xyz": [ -1.723, 8.796, -0.911 ], "P_xyz": [ -3.113, 11.015, -1.063 ], "form": ".", "ssZp": 3.609, "Dp": 4.419, "splay_angle": 82.366, "splay_distance": 13.137, "splay_ratio": 0.659, "d22": 10.411, "d64": 12.282, "eta": null, "theta": 88.928, "eta_prime": null, "theta_prime": 113.108, "eta_base": null, "theta_base": 104.796, "v0": -2.869, "v1": -19.956, "v2": 33.860, "v3": -36.507, "v4": 24.847, "amplitude": 36.788, "phase_angle": 23.015, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.003, "origin": [ 242.364, 196.577, 175.391 ], "x_axis": [ 0.112, -0.217, 0.970 ], "y_axis": [ 0.206, -0.950, -0.236 ], "z_axis": [ 0.972, 0.226, -0.061 ], "quaternion": [ -0.158, 0.728, -0.004, 0.667 ] } }, { "index": 1788, "index_chain": 1788, "chain_name": "A", "nt_resnum": 1867, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1867", "linked_nts": [ "///A/1866", "///A/1868" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,cap-donor,phosphate", "alpha": -159.995, "beta": 114.204, "gamma": -173.442, "delta": 143.159, "epsilon": -84.367, "zeta": 115.831, "epsilon_zeta": 159.802, "bb_type": "--", "chi": -102.695, "glyco_bond": "anti", "C5prime_xyz": [ -2.350, 8.197, -2.053 ], "P_xyz": [ -3.090, 8.908, -4.468 ], "form": ".", "ssZp": 0.521, "Dp": 0.620, "splay_angle": 56.399, "splay_distance": 10.070, "splay_ratio": 0.474, "d22": null, "d64": null, "eta": -120.083, "theta": 64.848, "eta_prime": -159.858, "theta_prime": 57.887, "eta_base": 163.293, "theta_base": 35.490, "v0": -23.996, "v1": 36.355, "v2": -34.147, "v3": 21.225, "v4": 1.553, "amplitude": 36.616, "phase_angle": 158.840, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.003, "origin": [ 247.215, 196.940, 163.188 ], "x_axis": [ 0.042, 0.903, 0.427 ], "y_axis": [ 0.471, -0.394, 0.789 ], "z_axis": [ 0.881, 0.168, -0.442 ], "quaternion": [ 0.227, 0.685, 0.501, 0.477 ] } }, { "index": 1789, "index_chain": 1789, "chain_name": "A", "nt_resnum": 1868, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1868", "linked_nts": [ "///A/1867", "///A/1869" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,cap-acceptor", "alpha": -81.546, "beta": 158.830, "gamma": -64.104, "delta": 80.065, "epsilon": -140.212, "zeta": -53.466, "epsilon_zeta": -86.746, "bb_type": "BI", "chi": -140.605, "glyco_bond": "anti", "C5prime_xyz": [ -1.232, 8.790, -0.666 ], "P_xyz": [ -0.026, 11.034, -0.033 ], "form": ".", "ssZp": 3.621, "Dp": 4.696, "splay_angle": 31.642, "splay_distance": 5.087, "splay_ratio": 0.273, "d22": null, "d64": null, "eta": 83.570, "theta": -157.516, "eta_prime": 61.472, "theta_prime": -141.247, "eta_base": 53.729, "theta_base": -79.839, "v0": 2.051, "v1": -24.792, "v2": 36.850, "v3": -36.611, "v4": 21.781, "amplitude": 38.249, "phase_angle": 15.545, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "0k", "suiteness": 0.125, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 240.659, 190.921, 167.899 ], "x_axis": [ 0.226, 0.848, 0.479 ], "y_axis": [ 0.973, -0.218, -0.073 ], "z_axis": [ 0.043, 0.482, -0.875 ], "quaternion": [ -0.182, 0.762, 0.598, 0.171 ] } }, { "index": 1790, "index_chain": 1790, "chain_name": "A", "nt_resnum": 1869, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1869", "linked_nts": [ "///A/1868", "///A/1870" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -82.028, "beta": 161.419, "gamma": 75.981, "delta": 81.718, "epsilon": -155.383, "zeta": -68.767, "epsilon_zeta": -86.615, "bb_type": "BI", "chi": -159.729, "glyco_bond": "anti", "C5prime_xyz": [ -1.252, 8.738, 0.498 ], "P_xyz": [ 1.218, 9.089, -0.305 ], "form": "A", "ssZp": 4.434, "Dp": 4.608, "splay_angle": 22.580, "splay_distance": 3.587, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 157.723, "theta": -147.848, "eta_prime": -169.771, "theta_prime": -154.683, "eta_base": -98.174, "theta_base": -139.384, "v0": 3.526, "v1": -25.561, "v2": 36.623, "v3": -35.530, "v4": 20.199, "amplitude": 37.632, "phase_angle": 13.299, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.205, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 243.543, 195.091, 168.312 ], "x_axis": [ 0.854, 0.143, 0.501 ], "y_axis": [ 0.474, -0.613, -0.632 ], "z_axis": [ 0.217, 0.777, -0.591 ], "quaternion": [ -0.403, 0.874, 0.176, 0.205 ] } }, { "index": 1791, "index_chain": 1791, "chain_name": "A", "nt_resnum": 1870, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1870", "linked_nts": [ "///A/1869", "///A/1871" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": -87.162, "beta": 157.101, "gamma": 84.546, "delta": 74.439, "epsilon": 61.639, "zeta": 142.425, "epsilon_zeta": -80.786, "bb_type": "--", "chi": -178.587, "glyco_bond": "anti", "C5prime_xyz": [ -1.631, 8.464, 1.566 ], "P_xyz": [ 0.831, 9.226, 1.061 ], "form": ".", "ssZp": 3.271, "Dp": 3.325, "splay_angle": 19.221, "splay_distance": 3.244, "splay_ratio": 0.170, "d22": null, "d64": null, "eta": -159.372, "theta": -104.810, "eta_prime": -149.232, "theta_prime": -125.338, "eta_base": -118.963, "theta_base": -84.634, "v0": 3.890, "v1": -27.414, "v2": 39.553, "v3": -38.130, "v4": 21.584, "amplitude": 40.616, "phase_angle": 13.136, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.011, "filter_rmsd": 0.103, "frame": { "rmsd": 0.006, "origin": [ 243.722, 198.597, 167.578 ], "x_axis": [ 0.969, -0.136, 0.206 ], "y_axis": [ 0.085, -0.601, -0.795 ], "z_axis": [ 0.232, 0.788, -0.571 ], "quaternion": [ -0.446, 0.886, -0.014, 0.123 ] } }, { "index": 1792, "index_chain": 1792, "chain_name": "A", "nt_resnum": 1871, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1871", "linked_nts": [ "///A/1870", "///A/1872" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate", "alpha": -6.788, "beta": -89.077, "gamma": -161.997, "delta": 84.468, "epsilon": -179.391, "zeta": -74.429, "epsilon_zeta": -104.962, "bb_type": "BI", "chi": -178.017, "glyco_bond": "anti", "C5prime_xyz": [ -1.590, 8.651, 1.513 ], "P_xyz": [ -0.432, 9.829, -0.538 ], "form": ".", "ssZp": 3.869, "Dp": 4.094, "splay_angle": 29.562, "splay_distance": 4.423, "splay_ratio": 0.256, "d22": null, "d64": null, "eta": 143.194, "theta": 171.199, "eta_prime": 175.675, "theta_prime": -172.971, "eta_base": -118.869, "theta_base": -136.298, "v0": -3.545, "v1": -17.000, "v2": 29.825, "v3": -32.640, "v4": 22.876, "amplitude": 32.807, "phase_angle": 24.619, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.019, "frame": { "rmsd": 0.019, "origin": [ 245.810, 200.817, 166.467 ], "x_axis": [ 0.779, -0.545, -0.310 ], "y_axis": [ -0.528, -0.303, -0.793 ], "z_axis": [ 0.339, 0.782, -0.524 ], "quaternion": [ -0.488, 0.807, -0.333, 0.009 ] } }, { "index": 1793, "index_chain": 1793, "chain_name": "A", "nt_resnum": 1872, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1872", "linked_nts": [ "///A/1871", "///A/1873" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,phosphate", "alpha": -136.555, "beta": -122.156, "gamma": 85.209, "delta": 83.511, "epsilon": -159.552, "zeta": -69.918, "epsilon_zeta": -89.634, "bb_type": "BI", "chi": -160.532, "glyco_bond": "anti", "C5prime_xyz": [ -1.316, 8.755, 0.582 ], "P_xyz": [ 1.185, 8.307, 1.243 ], "form": "A", "ssZp": 4.342, "Dp": 4.483, "splay_angle": 24.115, "splay_distance": 3.791, "splay_ratio": 0.209, "d22": 4.630, "d64": 4.469, "eta": 165.809, "theta": -137.243, "eta_prime": 175.079, "theta_prime": -139.545, "eta_base": -143.467, "theta_base": -121.663, "v0": 1.831, "v1": -23.031, "v2": 34.293, "v3": -34.171, "v4": 20.423, "amplitude": 35.628, "phase_angle": 15.732, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.005, "origin": [ 247.499, 204.645, 165.035 ], "x_axis": [ 0.212, -0.700, -0.682 ], "y_axis": [ -0.958, -0.011, -0.287 ], "z_axis": [ 0.193, 0.714, -0.673 ], "quaternion": [ -0.364, 0.688, -0.602, -0.178 ] } }, { "index": 1794, "index_chain": 1794, "chain_name": "A", "nt_resnum": 1873, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1873", "linked_nts": [ "///A/1872", "///A/1874" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate", "alpha": -66.624, "beta": -175.258, "gamma": 48.254, "delta": 82.176, "epsilon": -100.133, "zeta": -96.269, "epsilon_zeta": -3.864, "bb_type": "--", "chi": -153.411, "glyco_bond": "anti", "C5prime_xyz": [ -1.276, 8.674, 0.149 ], "P_xyz": [ 1.296, 9.046, 0.516 ], "form": ".", "ssZp": 3.741, "Dp": 4.750, "splay_angle": 15.413, "splay_distance": 2.556, "splay_ratio": 0.138, "d22": null, "d64": null, "eta": -175.961, "theta": -151.117, "eta_prime": -170.108, "theta_prime": -146.716, "eta_base": -143.033, "theta_base": -171.196, "v0": 3.883, "v1": -25.151, "v2": 35.763, "v3": -34.533, "v4": 19.324, "amplitude": 36.662, "phase_angle": 12.709, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.856, "filter_rmsd": 0.103, "frame": { "rmsd": 0.004, "origin": [ 249.454, 207.026, 162.825 ], "x_axis": [ -0.327, -0.648, -0.688 ], "y_axis": [ -0.922, 0.379, 0.081 ], "z_axis": [ 0.208, 0.661, -0.721 ], "quaternion": [ 0.288, -0.504, 0.779, 0.238 ] } }, { "index": 1795, "index_chain": 1795, "chain_name": "A", "nt_resnum": 1874, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1874", "linked_nts": [ "///A/1873", "///A/1875" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,bulge,cap-donor", "alpha": -86.485, "beta": 87.929, "gamma": 126.066, "delta": 141.806, "epsilon": -144.207, "zeta": -65.975, "epsilon_zeta": -78.233, "bb_type": "BI", "chi": -144.751, "glyco_bond": "anti", "C5prime_xyz": [ -1.730, 8.771, 0.054 ], "P_xyz": [ -0.292, 8.743, -2.131 ], "form": ".", "ssZp": 2.299, "Dp": 2.140, "splay_angle": 15.577, "splay_distance": 2.873, "splay_ratio": 0.162, "d22": null, "d64": null, "eta": -145.799, "theta": -125.806, "eta_prime": -152.746, "theta_prime": -132.558, "eta_base": -177.418, "theta_base": -100.238, "v0": -21.451, "v1": 33.418, "v2": -31.918, "v3": 20.335, "v4": 0.559, "amplitude": 33.894, "phase_angle": 160.341, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 250.612, 209.269, 162.426 ], "x_axis": [ -0.431, -0.760, -0.487 ], "y_axis": [ -0.769, 0.591, -0.242 ], "z_axis": [ 0.472, 0.271, -0.839 ], "quaternion": [ 0.283, -0.452, 0.846, 0.008 ] } }, { "index": 1796, "index_chain": 1796, "chain_name": "A", "nt_resnum": 1875, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1875", "linked_nts": [ "///A/1874", "///A/1876" ], "nt_type": "RNA", "dbn": "(", "summary": "~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,internal-loop,cap-acceptor", "alpha": -149.489, "beta": -157.714, "gamma": 58.114, "delta": 79.069, "epsilon": 171.203, "zeta": -82.069, "epsilon_zeta": -106.728, "bb_type": "BI", "chi": -60.100, "glyco_bond": "--", "C5prime_xyz": [ -3.744, 5.935, -3.335 ], "P_xyz": [ -2.261, 5.489, -5.444 ], "form": ".", "ssZp": -1.127, "Dp": 4.213, "splay_angle": 26.219, "splay_distance": 4.430, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 95.088, "theta": -156.954, "eta_prime": 140.537, "theta_prime": -168.124, "eta_base": -166.948, "theta_base": 132.174, "v0": -2.063, "v1": -20.927, "v2": 34.608, "v3": -36.764, "v4": 24.520, "amplitude": 37.252, "phase_angle": 21.716, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2g", "suiteness": 0.012, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 250.487, 210.966, 160.111 ], "x_axis": [ -0.804, -0.424, -0.416 ], "y_axis": [ -0.111, 0.796, -0.595 ], "z_axis": [ 0.584, -0.432, -0.688 ], "quaternion": [ 0.276, -0.148, 0.907, -0.283 ] } }, { "index": 1797, "index_chain": 1797, "chain_name": "A", "nt_resnum": 1876, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1876", "linked_nts": [ "///A/1875", "///A/1877" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-canonical,non-pair-contact,internal-loop", "alpha": 138.394, "beta": -163.775, "gamma": -170.065, "delta": 147.353, "epsilon": -125.393, "zeta": -139.870, "epsilon_zeta": 14.477, "bb_type": "--", "chi": -62.642, "glyco_bond": "--", "C5prime_xyz": [ -3.395, 6.603, -3.065 ], "P_xyz": [ -3.333, 5.547, -5.470 ], "form": "B", "ssZp": 0.695, "Dp": 1.444, "splay_angle": 19.732, "splay_distance": 3.484, "splay_ratio": 0.172, "d22": null, "d64": null, "eta": -162.168, "theta": 176.693, "eta_prime": -164.794, "theta_prime": 157.788, "eta_base": 140.309, "theta_base": -150.710, "v0": -22.249, "v1": 36.723, "v2": -36.464, "v3": 24.474, "v4": -1.565, "amplitude": 38.002, "phase_angle": 163.646, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.023, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 253.952, 212.635, 157.911 ], "x_axis": [ -0.652, -0.752, 0.093 ], "y_axis": [ -0.459, 0.295, -0.838 ], "z_axis": [ 0.603, -0.589, -0.538 ], "quaternion": [ 0.162, -0.384, 0.788, -0.453 ] } }, { "index": 1798, "index_chain": 1798, "chain_name": "A", "nt_resnum": 1877, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1877", "linked_nts": [ "///A/1876", "///A/1878" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 43.677, "beta": -109.887, "gamma": -145.923, "delta": 77.470, "epsilon": 140.996, "zeta": 47.684, "epsilon_zeta": 93.312, "bb_type": "--", "chi": -131.471, "glyco_bond": "anti", "C5prime_xyz": [ -1.507, 8.580, -1.179 ], "P_xyz": [ -2.059, 9.047, -3.690 ], "form": ".", "ssZp": 3.344, "Dp": 3.968, "splay_angle": 38.300, "splay_distance": 6.382, "splay_ratio": 0.329, "d22": null, "d64": null, "eta": -172.380, "theta": -136.194, "eta_prime": 167.689, "theta_prime": -132.172, "eta_base": -139.272, "theta_base": -107.288, "v0": 2.130, "v1": -24.546, "v2": 36.386, "v3": -36.222, "v4": 21.555, "amplitude": 37.763, "phase_angle": 15.521, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "4n", "suiteness": 0.084, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 254.399, 210.489, 155.203 ], "x_axis": [ -0.805, -0.510, -0.301 ], "y_axis": [ -0.012, 0.521, -0.853 ], "z_axis": [ 0.593, -0.684, -0.426 ], "quaternion": [ 0.269, -0.157, 0.830, -0.463 ] } }, { "index": 1799, "index_chain": 1799, "chain_name": "A", "nt_resnum": 1878, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1878", "linked_nts": [ "///A/1877", "///A/1879" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop,phosphate", "alpha": -177.470, "beta": -142.372, "gamma": 28.128, "delta": 78.380, "epsilon": -142.763, "zeta": -104.763, "epsilon_zeta": -38.000, "bb_type": "BI", "chi": -142.999, "glyco_bond": "anti", "C5prime_xyz": [ -1.440, 8.717, -0.534 ], "P_xyz": [ 0.692, 9.904, 0.366 ], "form": ".", "ssZp": 3.779, "Dp": 4.737, "splay_angle": 18.052, "splay_distance": 2.861, "splay_ratio": 0.163, "d22": null, "d64": null, "eta": 94.022, "theta": 176.204, "eta_prime": 130.553, "theta_prime": -173.530, "eta_base": 175.917, "theta_base": -152.515, "v0": 4.393, "v1": -27.708, "v2": 39.167, "v3": -37.612, "v4": 20.974, "amplitude": 40.101, "phase_angle": 12.392, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 252.295, 207.021, 150.276 ], "x_axis": [ -0.513, 0.734, 0.445 ], "y_axis": [ 0.704, 0.657, -0.271 ], "z_axis": [ -0.491, 0.174, -0.853 ], "quaternion": [ -0.269, 0.413, 0.869, -0.028 ] } }, { "index": 1800, "index_chain": 1800, "chain_name": "A", "nt_resnum": 1879, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1879", "linked_nts": [ "///A/1878", "///A/1880" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -52.894, "beta": 131.932, "gamma": 68.032, "delta": 88.595, "epsilon": -159.589, "zeta": -67.254, "epsilon_zeta": -92.335, "bb_type": "BI", "chi": -151.127, "glyco_bond": "anti", "C5prime_xyz": [ -1.370, 8.631, 0.070 ], "P_xyz": [ 0.996, 8.280, -1.031 ], "form": "A", "ssZp": 4.124, "Dp": 4.479, "splay_angle": 16.436, "splay_distance": 2.624, "splay_ratio": 0.143, "d22": null, "d64": null, "eta": 163.890, "theta": -132.667, "eta_prime": -178.594, "theta_prime": -146.026, "eta_base": -155.520, "theta_base": -126.598, "v0": 6.977, "v1": -25.375, "v2": 33.057, "v3": -29.985, "v4": 14.618, "amplitude": 33.296, "phase_angle": 6.866, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.078, "filter_rmsd": 0.020, "frame": { "rmsd": 0.020, "origin": [ 251.055, 207.204, 147.704 ], "x_axis": [ -0.248, 0.866, 0.434 ], "y_axis": [ 0.666, 0.477, -0.574 ], "z_axis": [ -0.704, 0.147, -0.695 ], "quaternion": [ -0.366, 0.492, 0.778, -0.137 ] } }, { "index": 1801, "index_chain": 1801, "chain_name": "A", "nt_resnum": 1880, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1880", "linked_nts": [ "///A/1879", "///A/1881" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop", "alpha": -71.009, "beta": -179.463, "gamma": 50.393, "delta": 85.874, "epsilon": -100.994, "zeta": -89.411, "epsilon_zeta": -11.583, "bb_type": "--", "chi": -139.070, "glyco_bond": "anti", "C5prime_xyz": [ -1.370, 8.667, -0.665 ], "P_xyz": [ 1.226, 9.089, -0.546 ], "form": ".", "ssZp": 2.898, "Dp": 4.576, "splay_angle": 40.640, "splay_distance": 6.604, "splay_ratio": 0.359, "d22": 5.554, "d64": 5.492, "eta": -179.805, "theta": -120.366, "eta_prime": -170.639, "theta_prime": -103.515, "eta_base": -136.980, "theta_base": -51.970, "v0": 2.534, "v1": -22.253, "v2": 32.512, "v3": -31.853, "v4": 18.585, "amplitude": 33.564, "phase_angle": 14.378, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.768, "filter_rmsd": 0.102, "frame": { "rmsd": 0.007, "origin": [ 248.744, 207.860, 146.646 ], "x_axis": [ 0.283, 0.950, 0.131 ], "y_axis": [ 0.486, -0.024, -0.873 ], "z_axis": [ -0.827, 0.311, -0.469 ], "quaternion": [ -0.444, 0.666, 0.539, -0.261 ] } }, { "index": 1802, "index_chain": 1802, "chain_name": "A", "nt_resnum": 1881, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1881", "linked_nts": [ "///A/1880", "///A/1882" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart", "alpha": -46.528, "beta": 95.017, "gamma": 128.785, "delta": 148.320, "epsilon": -37.193, "zeta": -141.098, "epsilon_zeta": 103.905, "bb_type": "--", "chi": -109.091, "glyco_bond": "anti", "C5prime_xyz": [ -2.004, 8.212, -1.770 ], "P_xyz": [ -0.965, 7.229, -3.974 ], "form": ".", "ssZp": -0.664, "Dp": 0.592, "splay_angle": 87.409, "splay_distance": 12.139, "splay_ratio": 0.694, "d22": null, "d64": null, "eta": -48.803, "theta": -103.404, "eta_prime": -71.215, "theta_prime": -112.097, "eta_base": -36.764, "theta_base": -132.628, "v0": -20.803, "v1": 35.600, "v2": -36.068, "v3": 25.063, "v4": -2.940, "amplitude": 37.230, "phase_angle": 165.649, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 250.487, 212.522, 142.306 ], "x_axis": [ 0.370, 0.692, -0.620 ], "y_axis": [ -0.435, -0.460, -0.774 ], "z_axis": [ -0.821, 0.555, 0.131 ], "quaternion": [ 0.510, -0.652, -0.099, 0.553 ] } }, { "index": 1803, "index_chain": 1803, "chain_name": "A", "nt_resnum": 1882, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1882", "linked_nts": [ "///A/1881", "///A/1883" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": 147.050, "beta": -108.680, "gamma": 82.549, "delta": 152.647, "epsilon": -148.717, "zeta": -162.146, "epsilon_zeta": 13.429, "bb_type": "--", "chi": -63.719, "glyco_bond": "--", "C5prime_xyz": [ -3.133, 6.721, -3.046 ], "P_xyz": [ -0.580, 7.334, -3.185 ], "form": ".", "ssZp": 1.163, "Dp": 1.770, "splay_angle": 23.110, "splay_distance": 4.146, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": 31.300, "theta": -153.867, "eta_prime": 124.443, "theta_prime": 175.757, "eta_base": 149.916, "theta_base": -111.584, "v0": -20.534, "v1": 37.347, "v2": -38.905, "v3": 27.943, "v4": -4.834, "amplitude": 39.751, "phase_angle": 168.159, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 238.942, 208.968, 141.109 ], "x_axis": [ 0.471, 0.880, -0.063 ], "y_axis": [ 0.744, -0.435, -0.507 ], "z_axis": [ -0.473, 0.192, -0.860 ], "quaternion": [ -0.210, 0.832, 0.488, -0.161 ] } }, { "index": 1804, "index_chain": 1804, "chain_name": "A", "nt_resnum": 1883, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1883", "linked_nts": [ "///A/1882", "///A/1884" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,A-minor,cap-acceptor,phosphate", "alpha": -64.662, "beta": 128.691, "gamma": 49.231, "delta": 82.851, "epsilon": -176.073, "zeta": 28.544, "epsilon_zeta": 155.383, "bb_type": "--", "chi": -129.762, "glyco_bond": "anti", "C5prime_xyz": [ -1.186, 8.464, -1.257 ], "P_xyz": [ 1.093, 7.642, -2.266 ], "form": ".", "ssZp": 3.372, "Dp": 4.420, "splay_angle": 29.670, "splay_distance": 5.309, "splay_ratio": 0.265, "d22": null, "d64": null, "eta": 151.506, "theta": -77.475, "eta_prime": 157.971, "theta_prime": -99.018, "eta_base": -120.507, "theta_base": -84.866, "v0": 5.292, "v1": -25.974, "v2": 35.713, "v3": -33.613, "v4": 17.891, "amplitude": 36.314, "phase_angle": 10.433, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4a", "suiteness": 0.010, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 239.780, 208.561, 137.069 ], "x_axis": [ 0.878, 0.254, -0.405 ], "y_axis": [ 0.114, -0.934, -0.339 ], "z_axis": [ -0.465, 0.251, -0.849 ], "quaternion": [ -0.154, 0.957, 0.096, -0.227 ] } }, { "index": 1805, "index_chain": 1805, "chain_name": "A", "nt_resnum": 1884, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1884", "linked_nts": [ "///A/1883", "///A/1885" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop,A-minor,cap-donor,phosphate", "alpha": -149.611, "beta": 95.432, "gamma": 163.347, "delta": 75.922, "epsilon": 116.148, "zeta": 58.918, "epsilon_zeta": 57.229, "bb_type": "--", "chi": -174.678, "glyco_bond": "anti", "C5prime_xyz": [ -1.210, 8.497, 1.409 ], "P_xyz": [ -1.329, 10.641, -0.099 ], "form": ".", "ssZp": 3.632, "Dp": 3.737, "splay_angle": 22.138, "splay_distance": 3.515, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": -137.508, "theta": 172.054, "eta_prime": -132.249, "theta_prime": -162.562, "eta_base": -86.108, "theta_base": -98.908, "v0": 6.223, "v1": -28.302, "v2": 38.539, "v3": -36.037, "v4": 18.879, "amplitude": 39.104, "phase_angle": 9.755, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 243.100, 210.063, 133.209 ], "x_axis": [ 0.874, -0.354, -0.333 ], "y_axis": [ -0.421, -0.894, -0.153 ], "z_axis": [ -0.244, 0.274, -0.930 ], "quaternion": [ -0.111, 0.962, -0.201, -0.150 ] } }, { "index": 1806, "index_chain": 1806, "chain_name": "A", "nt_resnum": 1885, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1885", "linked_nts": [ "///A/1884", "///A/1886" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,phosphate", "alpha": -159.984, "beta": 177.336, "gamma": 57.110, "delta": 79.620, "epsilon": -138.734, "zeta": -86.360, "epsilon_zeta": -52.373, "bb_type": "BI", "chi": -157.228, "glyco_bond": "anti", "C5prime_xyz": [ -1.344, 8.718, 0.342 ], "P_xyz": [ 1.211, 9.221, 0.329 ], "form": ".", "ssZp": 4.322, "Dp": 4.714, "splay_angle": 35.105, "splay_distance": 5.617, "splay_ratio": 0.303, "d22": null, "d64": null, "eta": 132.167, "theta": -110.236, "eta_prime": 163.051, "theta_prime": -109.522, "eta_base": -119.700, "theta_base": -64.836, "v0": 2.645, "v1": -25.322, "v2": 37.112, "v3": -36.644, "v4": 21.441, "amplitude": 38.380, "phase_angle": 14.772, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.006, "origin": [ 244.020, 210.073, 129.816 ], "x_axis": [ 0.179, -0.949, -0.262 ], "y_axis": [ -0.966, -0.220, 0.137 ], "z_axis": [ -0.187, 0.228, -0.955 ], "quaternion": [ -0.030, 0.767, -0.624, -0.146 ] } }, { "index": 1807, "index_chain": 1807, "chain_name": "A", "nt_resnum": 1886, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1886", "linked_nts": [ "///A/1885", "///A/1887" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop", "alpha": 132.603, "beta": -121.260, "gamma": -179.916, "delta": 83.408, "epsilon": -95.285, "zeta": -34.396, "epsilon_zeta": -60.889, "bb_type": "--", "chi": 173.810, "glyco_bond": "anti", "C5prime_xyz": [ -1.409, 8.180, 1.998 ], "P_xyz": [ 0.347, 9.515, 0.585 ], "form": ".", "ssZp": 4.736, "Dp": 4.760, "splay_angle": 13.372, "splay_distance": 2.648, "splay_ratio": 0.138, "d22": null, "d64": null, "eta": 170.833, "theta": -112.175, "eta_prime": -160.581, "theta_prime": -134.835, "eta_base": -89.144, "theta_base": -132.608, "v0": 5.628, "v1": -26.560, "v2": 36.195, "v3": -33.956, "v4": 17.922, "amplitude": 36.757, "phase_angle": 10.024, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.144, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 242.880, 205.619, 126.589 ], "x_axis": [ -0.655, -0.754, 0.050 ], "y_axis": [ -0.743, 0.655, 0.137 ], "z_axis": [ -0.136, 0.052, -0.989 ], "quaternion": [ -0.051, -0.412, 0.908, 0.052 ] } }, { "index": 1808, "index_chain": 1808, "chain_name": "A", "nt_resnum": 1887, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1887", "linked_nts": [ "///A/1886", "///A/1888" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop", "alpha": -124.735, "beta": 80.516, "gamma": 160.237, "delta": 80.522, "epsilon": -153.997, "zeta": -116.488, "epsilon_zeta": -37.509, "bb_type": "BI", "chi": -146.802, "glyco_bond": "anti", "C5prime_xyz": [ -1.348, 8.717, -0.290 ], "P_xyz": [ -2.404, 9.710, -2.472 ], "form": ".", "ssZp": 4.032, "Dp": 4.645, "splay_angle": 44.064, "splay_distance": 6.689, "splay_ratio": 0.376, "d22": null, "d64": null, "eta": 161.673, "theta": 103.986, "eta_prime": 170.813, "theta_prime": 126.528, "eta_base": -167.550, "theta_base": 136.625, "v0": 4.442, "v1": -26.632, "v2": 37.464, "v3": -35.958, "v4": 19.903, "amplitude": 38.320, "phase_angle": 12.132, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 243.589, 203.643, 124.975 ], "x_axis": [ -0.786, -0.618, 0.006 ], "y_axis": [ -0.550, 0.695, -0.463 ], "z_axis": [ 0.282, -0.368, -0.886 ], "quaternion": [ 0.075, -0.318, 0.918, -0.226 ] } }, { "index": 1809, "index_chain": 1809, "chain_name": "A", "nt_resnum": 1888, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1888", "linked_nts": [ "///A/1887", "///A/1889" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,cap-acceptor,phosphate", "alpha": -51.461, "beta": 168.048, "gamma": 32.709, "delta": 80.112, "epsilon": -119.741, "zeta": -97.202, "epsilon_zeta": -22.539, "bb_type": "--", "chi": -174.848, "glyco_bond": "anti", "C5prime_xyz": [ -0.993, 8.364, 1.400 ], "P_xyz": [ 1.487, 8.282, 2.241 ], "form": "A", "ssZp": 4.733, "Dp": 4.835, "splay_angle": 21.512, "splay_distance": 3.283, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 173.174, "theta": -145.538, "eta_prime": 161.378, "theta_prime": -138.415, "eta_base": 157.230, "theta_base": -110.906, "v0": 7.229, "v1": -29.000, "v2": 38.697, "v3": -35.600, "v4": 17.881, "amplitude": 39.101, "phase_angle": 8.242, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.410, "filter_rmsd": 0.040, "frame": { "rmsd": 0.008, "origin": [ 248.674, 204.091, 120.654 ], "x_axis": [ -0.736, -0.349, 0.580 ], "y_axis": [ -0.567, 0.786, -0.246 ], "z_axis": [ -0.370, -0.510, -0.776 ], "quaternion": [ -0.262, -0.252, 0.908, -0.208 ] } }, { "index": 1810, "index_chain": 1810, "chain_name": "A", "nt_resnum": 1889, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1889", "linked_nts": [ "///A/1888", "///A/1890" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop,phosphate", "alpha": -53.711, "beta": 142.040, "gamma": 63.050, "delta": 82.746, "epsilon": -159.142, "zeta": -55.182, "epsilon_zeta": -103.960, "bb_type": "BI", "chi": -179.113, "glyco_bond": "anti", "C5prime_xyz": [ -1.673, 8.521, 1.602 ], "P_xyz": [ 0.940, 8.723, 1.627 ], "form": ".", "ssZp": 4.344, "Dp": 4.464, "splay_angle": 38.944, "splay_distance": 5.723, "splay_ratio": 0.333, "d22": null, "d64": null, "eta": 161.812, "theta": -94.606, "eta_prime": -178.449, "theta_prime": -104.822, "eta_base": -135.171, "theta_base": -38.884, "v0": -0.053, "v1": -21.482, "v2": 33.568, "v3": -34.564, "v4": 21.817, "amplitude": 35.437, "phase_angle": 18.691, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.881, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 247.743, 201.262, 119.270 ], "x_axis": [ -0.786, 0.258, 0.562 ], "y_axis": [ -0.131, 0.818, -0.560 ], "z_axis": [ -0.604, -0.513, -0.609 ], "quaternion": [ -0.325, 0.035, 0.896, -0.299 ] } }, { "index": 1811, "index_chain": 1811, "chain_name": "A", "nt_resnum": 1890, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1890", "linked_nts": [ "///A/1889", null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "break,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop", "alpha": -176.882, "beta": -138.717, "gamma": 115.526, "delta": 83.182, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -158.535, "glyco_bond": "anti", "C5prime_xyz": [ -1.172, 8.705, 0.448 ], "P_xyz": [ 1.332, 8.513, -0.334 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 4.425, "v1": -25.330, "v2": 35.430, "v3": -33.873, "v4": 18.578, "amplitude": 36.190, "phase_angle": 11.758, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 242.769, 203.741, 117.903 ], "x_axis": [ -0.322, 0.794, -0.516 ], "y_axis": [ 0.599, -0.252, -0.761 ], "z_axis": [ -0.733, -0.554, -0.394 ], "quaternion": [ -0.090, 0.575, 0.605, -0.543 ] } }, { "index": 1812, "index_chain": 1812, "chain_name": "A", "nt_resnum": 1911, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1911", "linked_nts": [ null, "///A/1912" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop", "alpha": null, "beta": 107.661, "gamma": 173.153, "delta": 82.041, "epsilon": -172.721, "zeta": -73.599, "epsilon_zeta": -99.122, "bb_type": "BI", "chi": -174.570, "glyco_bond": "anti", "C5prime_xyz": [ -1.478, 8.618, 1.360 ], "P_xyz": [ -1.600, 10.932, 0.134 ], "form": ".", "ssZp": 4.274, "Dp": 4.369, "splay_angle": 30.121, "splay_distance": 4.502, "splay_ratio": 0.260, "d22": null, "d64": null, "eta": null, "theta": 170.834, "eta_prime": null, "theta_prime": -160.892, "eta_base": null, "theta_base": -88.823, "v0": 0.567, "v1": -22.216, "v2": 34.084, "v3": -34.737, "v4": 21.565, "amplitude": 35.782, "phase_angle": 17.721, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 243.940, 203.020, 117.701 ], "x_axis": [ -0.771, 0.562, -0.298 ], "y_axis": [ -0.635, -0.712, 0.300 ], "z_axis": [ -0.044, 0.421, 0.906 ], "quaternion": [ 0.325, -0.093, 0.196, 0.920 ] } }, { "index": 1813, "index_chain": 1813, "chain_name": "A", "nt_resnum": 1912, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1912", "linked_nts": [ "///A/1911", "///A/1913" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop", "alpha": 167.449, "beta": -132.990, "gamma": 157.796, "delta": 147.945, "epsilon": -144.590, "zeta": -101.846, "epsilon_zeta": -42.744, "bb_type": "BI", "chi": -157.773, "glyco_bond": "anti", "C5prime_xyz": [ -1.605, 8.630, 0.896 ], "P_xyz": [ 1.007, 8.623, 0.579 ], "form": ".", "ssZp": 1.574, "Dp": 1.860, "splay_angle": 60.626, "splay_distance": 10.531, "splay_ratio": 0.509, "d22": null, "d64": null, "eta": 161.974, "theta": -93.961, "eta_prime": -137.287, "theta_prime": -156.732, "eta_base": -59.453, "theta_base": -151.494, "v0": -18.907, "v1": 33.814, "v2": -34.924, "v3": 24.862, "v4": -3.904, "amplitude": 35.781, "phase_angle": 167.436, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.226, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 240.719, 205.055, 120.098 ], "x_axis": [ -0.923, -0.359, 0.143 ], "y_axis": [ 0.383, -0.803, 0.456 ], "z_axis": [ -0.049, 0.476, 0.878 ], "quaternion": [ -0.195, 0.025, 0.245, 0.949 ] } }, { "index": 1814, "index_chain": 1814, "chain_name": "A", "nt_resnum": 1913, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1913", "linked_nts": [ "///A/1912", "///A/1914" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,cap-donor", "alpha": 153.952, "beta": 138.599, "gamma": 179.662, "delta": 81.311, "epsilon": -129.294, "zeta": -73.206, "epsilon_zeta": -56.088, "bb_type": "BI", "chi": 169.227, "glyco_bond": "anti", "C5prime_xyz": [ -1.931, 8.258, 2.143 ], "P_xyz": [ -1.505, 10.839, 1.947 ], "form": ".", "ssZp": 4.446, "Dp": 4.572, "splay_angle": 28.668, "splay_distance": 4.387, "splay_ratio": 0.248, "d22": null, "d64": null, "eta": 140.150, "theta": -174.921, "eta_prime": 151.504, "theta_prime": -149.349, "eta_base": 169.523, "theta_base": -80.632, "v0": -2.587, "v1": -19.834, "v2": 33.399, "v3": -35.769, "v4": 24.212, "amplitude": 36.170, "phase_angle": 22.574, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 246.968, 213.160, 122.583 ], "x_axis": [ -0.987, -0.038, 0.156 ], "y_axis": [ 0.033, -0.999, -0.040 ], "z_axis": [ 0.157, -0.034, 0.987 ], "quaternion": [ -0.018, 0.078, -0.019, 0.997 ] } }, { "index": 1815, "index_chain": 1815, "chain_name": "A", "nt_resnum": 1914, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1914", "linked_nts": [ "///A/1913", "///A/1915" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop", "alpha": -46.711, "beta": 151.248, "gamma": 60.608, "delta": 153.689, "epsilon": -170.853, "zeta": -70.899, "epsilon_zeta": -99.954, "bb_type": "BI", "chi": -148.962, "glyco_bond": "anti", "C5prime_xyz": [ -2.358, 8.613, 0.471 ], "P_xyz": [ 0.006, 8.863, 1.617 ], "form": ".", "ssZp": 1.268, "Dp": 2.184, "splay_angle": 21.850, "splay_distance": 4.070, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 145.654, "theta": -72.543, "eta_prime": -146.900, "theta_prime": -112.290, "eta_base": -64.287, "theta_base": -70.046, "v0": -22.858, "v1": 39.937, "v2": -40.563, "v3": 28.319, "v4": -3.628, "amplitude": 41.783, "phase_angle": 166.121, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.509, "filter_rmsd": 0.037, "frame": { "rmsd": 0.009, "origin": [ 244.667, 212.071, 126.157 ], "x_axis": [ -0.534, -0.844, -0.055 ], "y_axis": [ 0.835, -0.515, -0.192 ], "z_axis": [ 0.134, -0.148, 0.980 ], "quaternion": [ -0.482, 0.023, -0.098, 0.870 ] } }, { "index": 1816, "index_chain": 1816, "chain_name": "A", "nt_resnum": 1915, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1915", "linked_nts": [ "///A/1914", "///A/1916" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end", "alpha": -100.802, "beta": -163.185, "gamma": 36.522, "delta": 144.411, "epsilon": -1.253, "zeta": 169.790, "epsilon_zeta": 188.957, "bb_type": "--", "chi": -103.580, "glyco_bond": "anti", "C5prime_xyz": [ -2.901, 8.223, -1.897 ], "P_xyz": [ -1.257, 10.269, -1.548 ], "form": ".", "ssZp": 0.012, "Dp": 1.367, "splay_angle": 19.595, "splay_distance": 3.363, "splay_ratio": 0.184, "d22": 4.117, "d64": 3.682, "eta": 161.293, "theta": -111.966, "eta_prime": -148.948, "theta_prime": -152.634, "eta_base": -93.047, "theta_base": -107.885, "v0": -28.249, "v1": 41.147, "v2": -37.630, "v3": 22.263, "v4": 3.538, "amplitude": 41.074, "phase_angle": 156.370, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.112, "frame": { "rmsd": 0.011, "origin": [ 243.755, 210.154, 129.629 ], "x_axis": [ 0.216, -0.939, -0.266 ], "y_axis": [ 0.947, 0.268, -0.176 ], "z_axis": [ 0.237, -0.214, 0.948 ], "quaternion": [ 0.780, 0.012, 0.161, -0.605 ] } }, { "index": 1817, "index_chain": 1817, "chain_name": "A", "nt_resnum": 1916, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1916", "linked_nts": [ "///A/1915", "///A/1917" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop,A-minor", "alpha": -26.980, "beta": -118.367, "gamma": -149.495, "delta": 150.073, "epsilon": 154.505, "zeta": -81.749, "epsilon_zeta": -123.746, "bb_type": "BI", "chi": -124.792, "glyco_bond": "anti", "C5prime_xyz": [ -2.091, 8.647, -0.892 ], "P_xyz": [ -0.820, 9.243, -3.107 ], "form": ".", "ssZp": 1.508, "Dp": 2.178, "splay_angle": 17.803, "splay_distance": 3.136, "splay_ratio": 0.174, "d22": null, "d64": null, "eta": -157.252, "theta": 132.140, "eta_prime": 178.094, "theta_prime": -169.374, "eta_base": -136.408, "theta_base": -108.935, "v0": -23.813, "v1": 40.880, "v2": -41.400, "v3": 28.473, "v4": -3.287, "amplitude": 42.761, "phase_angle": 165.508, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.006, "origin": [ 243.953, 208.933, 132.757 ], "x_axis": [ 0.685, -0.576, -0.447 ], "y_axis": [ 0.636, 0.771, -0.019 ], "z_axis": [ 0.356, -0.271, 0.894 ], "quaternion": [ 0.915, 0.069, 0.219, -0.331 ] } }, { "index": 1818, "index_chain": 1818, "chain_name": "A", "nt_resnum": 1917, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1917", "linked_nts": [ "///A/1916", "///A/1918" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate", "alpha": -135.620, "beta": -107.864, "gamma": 47.857, "delta": 140.085, "epsilon": -119.711, "zeta": -129.641, "epsilon_zeta": 9.930, "bb_type": "--", "chi": -80.935, "glyco_bond": "anti", "C5prime_xyz": [ -2.986, 7.484, -2.718 ], "P_xyz": [ -1.159, 9.354, -2.414 ], "form": ".", "ssZp": 1.072, "Dp": 1.665, "splay_angle": 56.775, "splay_distance": 9.265, "splay_ratio": 0.481, "d22": null, "d64": null, "eta": 158.256, "theta": -175.970, "eta_prime": 177.736, "theta_prime": 172.458, "eta_base": -120.478, "theta_base": 178.355, "v0": -24.461, "v1": 35.279, "v2": -32.013, "v3": 18.778, "v4": 3.398, "amplitude": 35.108, "phase_angle": 155.761, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 245.758, 206.919, 134.344 ], "x_axis": [ 0.882, 0.123, -0.456 ], "y_axis": [ 0.071, 0.920, 0.386 ], "z_axis": [ 0.467, -0.372, 0.802 ], "quaternion": [ 0.949, 0.200, 0.243, 0.014 ] } }, { "index": 1819, "index_chain": 1819, "chain_name": "A", "nt_resnum": 1918, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1918", "linked_nts": [ "///A/1917", "///A/1919" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -167.642, "beta": 94.882, "gamma": 108.414, "delta": 84.814, "epsilon": -171.781, "zeta": -75.184, "epsilon_zeta": -96.597, "bb_type": "BI", "chi": -159.152, "glyco_bond": "anti", "C5prime_xyz": [ -0.994, 8.525, 0.469 ], "P_xyz": [ -0.128, 8.572, -2.004 ], "form": ".", "ssZp": 4.406, "Dp": 4.517, "splay_angle": 28.801, "splay_distance": 4.376, "splay_ratio": 0.249, "d22": null, "d64": null, "eta": 113.586, "theta": -120.723, "eta_prime": 130.043, "theta_prime": -146.191, "eta_base": 152.504, "theta_base": -105.922, "v0": 8.376, "v1": -28.816, "v2": 37.210, "v3": -33.348, "v4": 15.821, "amplitude": 37.413, "phase_angle": 5.970, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 241.974, 205.624, 142.702 ], "x_axis": [ 0.877, -0.152, -0.456 ], "y_axis": [ 0.173, 0.985, 0.004 ], "z_axis": [ 0.448, -0.082, 0.890 ], "quaternion": [ 0.969, 0.022, 0.233, -0.084 ] } }, { "index": 1820, "index_chain": 1820, "chain_name": "A", "nt_resnum": 1919, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1919", "linked_nts": [ "///A/1918", "///A/1920" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": 161.124, "beta": -127.745, "gamma": 152.407, "delta": 83.427, "epsilon": -114.404, "zeta": -94.273, "epsilon_zeta": -20.130, "bb_type": "--", "chi": 177.254, "glyco_bond": "anti", "C5prime_xyz": [ -1.507, 8.282, 1.831 ], "P_xyz": [ 0.844, 8.862, 0.832 ], "form": ".", "ssZp": 4.675, "Dp": 4.708, "splay_angle": 28.945, "splay_distance": 4.375, "splay_ratio": 0.250, "d22": null, "d64": null, "eta": 165.556, "theta": -132.746, "eta_prime": -165.873, "theta_prime": -131.969, "eta_base": -94.742, "theta_base": -82.269, "v0": 3.537, "v1": -24.345, "v2": 34.725, "v3": -33.664, "v4": 19.025, "amplitude": 35.648, "phase_angle": 13.068, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.055, "filter_rmsd": 0.039, "frame": { "rmsd": 0.003, "origin": [ 246.155, 205.249, 143.937 ], "x_axis": [ 0.726, 0.630, -0.274 ], "y_axis": [ -0.511, 0.762, 0.397 ], "z_axis": [ 0.459, -0.148, 0.876 ], "quaternion": [ 0.917, 0.149, 0.200, 0.311 ] } }, { "index": 1821, "index_chain": 1821, "chain_name": "A", "nt_resnum": 1920, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1920", "linked_nts": [ "///A/1919", "///A/1921" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop", "alpha": -34.969, "beta": 136.643, "gamma": 50.335, "delta": 85.363, "epsilon": -149.590, "zeta": -100.283, "epsilon_zeta": -49.307, "bb_type": "BI", "chi": -165.284, "glyco_bond": "anti", "C5prime_xyz": [ -1.546, 8.694, 0.900 ], "P_xyz": [ 1.067, 8.582, 0.953 ], "form": "A", "ssZp": 4.319, "Dp": 4.458, "splay_angle": 21.081, "splay_distance": 3.440, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": 162.678, "theta": -120.353, "eta_prime": -168.495, "theta_prime": -135.469, "eta_base": -93.596, "theta_base": -111.819, "v0": 0.725, "v1": -20.850, "v2": 31.845, "v3": -32.396, "v4": 19.989, "amplitude": 33.382, "phase_angle": 17.450, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.506, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 249.314, 207.003, 146.405 ], "x_axis": [ 0.015, 0.985, 0.174 ], "y_axis": [ -0.868, -0.073, 0.490 ], "z_axis": [ 0.496, -0.158, 0.854 ], "quaternion": [ 0.670, 0.242, 0.120, 0.691 ] } }, { "index": 1822, "index_chain": 1822, "chain_name": "A", "nt_resnum": 1921, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1921", "linked_nts": [ "///A/1920", "///A/1922" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 146.876, "beta": -135.842, "gamma": 164.918, "delta": 80.464, "epsilon": -140.795, "zeta": 33.988, "epsilon_zeta": 185.217, "bb_type": "--", "chi": 175.898, "glyco_bond": "anti", "C5prime_xyz": [ -1.567, 8.333, 1.866 ], "P_xyz": [ 0.481, 9.511, 0.755 ], "form": ".", "ssZp": 4.654, "Dp": 4.686, "splay_angle": 48.721, "splay_distance": 8.150, "splay_ratio": 0.429, "d22": 6.517, "d64": 7.236, "eta": 147.508, "theta": -45.676, "eta_prime": 169.782, "theta_prime": -90.126, "eta_base": -137.267, "theta_base": -94.274, "v0": 3.447, "v1": -25.779, "v2": 37.085, "v3": -36.131, "v4": 20.547, "amplitude": 38.143, "phase_angle": 13.524, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.197, "filter_rmsd": 0.061, "frame": { "rmsd": 0.009, "origin": [ 251.878, 207.549, 148.632 ], "x_axis": [ -0.506, 0.789, 0.348 ], "y_axis": [ -0.705, -0.611, 0.360 ], "z_axis": [ 0.497, -0.063, 0.866 ], "quaternion": [ 0.433, 0.245, 0.086, 0.863 ] } }, { "index": 1823, "index_chain": 1823, "chain_name": "A", "nt_resnum": 1922, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1922", "linked_nts": [ "///A/1921", "///A/1923" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor", "alpha": 160.032, "beta": 67.932, "gamma": -155.991, "delta": 148.447, "epsilon": -48.540, "zeta": 92.539, "epsilon_zeta": 218.921, "bb_type": "--", "chi": -126.063, "glyco_bond": "anti", "C5prime_xyz": [ -1.519, 8.597, -0.833 ], "P_xyz": [ -2.451, 10.059, -2.790 ], "form": ".", "ssZp": -0.389, "Dp": 0.416, "splay_angle": 64.451, "splay_distance": 9.336, "splay_ratio": 0.555, "d22": 3.789, "d64": 3.682, "eta": -167.587, "theta": 102.287, "eta_prime": -143.183, "theta_prime": 87.187, "eta_base": -119.799, "theta_base": 10.297, "v0": -17.818, "v1": 33.326, "v2": -35.284, "v3": 25.919, "v4": -5.307, "amplitude": 35.873, "phase_angle": 169.606, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 252.770, 211.256, 155.835 ], "x_axis": [ -0.952, 0.292, 0.085 ], "y_axis": [ -0.288, -0.956, 0.063 ], "z_axis": [ 0.100, 0.036, 0.994 ], "quaternion": [ 0.147, 0.047, 0.025, 0.988 ] } }, { "index": 1824, "index_chain": 1824, "chain_name": "A", "nt_resnum": 1923, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1923", "linked_nts": [ "///A/1922", "///A/1924" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,non-pair-contact,internal-loop,cap-acceptor", "alpha": 106.116, "beta": -134.189, "gamma": 61.120, "delta": 81.237, "epsilon": -115.089, "zeta": -67.571, "epsilon_zeta": -47.518, "bb_type": "--", "chi": -28.081, "glyco_bond": "syn", "C5prime_xyz": [ -4.628, 4.845, -2.731 ], "P_xyz": [ -3.547, 3.547, -4.730 ], "form": ".", "ssZp": -4.345, "Dp": 4.689, "splay_angle": 73.118, "splay_distance": 12.024, "splay_ratio": 0.598, "d22": 6.144, "d64": 6.844, "eta": 96.254, "theta": -105.571, "eta_prime": 75.212, "theta_prime": -106.474, "eta_base": 19.699, "theta_base": -119.433, "v0": -0.115, "v1": -22.107, "v2": 34.584, "v3": -35.644, "v4": 22.591, "amplitude": 36.534, "phase_angle": 18.804, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.008, "origin": [ 250.089, 203.271, 151.807 ], "x_axis": [ -0.716, 0.590, 0.373 ], "y_axis": [ 0.683, 0.701, 0.202 ], "z_axis": [ -0.142, 0.400, -0.906 ], "quaternion": [ -0.141, 0.349, 0.911, 0.165 ] } }, { "index": 1825, "index_chain": 1825, "chain_name": "A", "nt_resnum": 1924, "nt_name": "C", "nt_code": "C", "nt_id": "///A/1924", "linked_nts": [ "///A/1923", "///A/1925" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,bulge,internal-loop", "alpha": -91.938, "beta": -110.621, "gamma": -0.941, "delta": 81.768, "epsilon": 174.981, "zeta": -94.303, "epsilon_zeta": -90.716, "bb_type": "BI", "chi": -119.493, "glyco_bond": "anti", "C5prime_xyz": [ -1.635, 8.407, -1.836 ], "P_xyz": [ -0.543, 10.653, -1.051 ], "form": "B", "ssZp": 2.841, "Dp": 4.243, "splay_angle": 22.976, "splay_distance": 3.790, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 133.133, "theta": 177.558, "eta_prime": 139.986, "theta_prime": -173.666, "eta_base": 119.905, "theta_base": -130.851, "v0": -0.308, "v1": -21.116, "v2": 33.290, "v3": -34.295, "v4": 21.879, "amplitude": 35.218, "phase_angle": 19.044, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.014, "origin": [ 250.056, 210.730, 161.238 ], "x_axis": [ -0.703, -0.444, -0.555 ], "y_axis": [ 0.697, -0.583, -0.417 ], "z_axis": [ -0.138, -0.680, 0.720 ], "quaternion": [ -0.329, -0.200, -0.317, 0.867 ] } }, { "index": 1826, "index_chain": 1826, "chain_name": "A", "nt_resnum": 1925, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1925", "linked_nts": [ "///A/1924", "///A/1926" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate", "alpha": 155.116, "beta": -128.989, "gamma": 159.034, "delta": 85.764, "epsilon": -158.264, "zeta": -69.129, "epsilon_zeta": -89.135, "bb_type": "BI", "chi": -157.533, "glyco_bond": "anti", "C5prime_xyz": [ -0.865, 8.550, 0.446 ], "P_xyz": [ 0.936, 8.628, -1.473 ], "form": "A", "ssZp": 4.373, "Dp": 4.582, "splay_angle": 20.670, "splay_distance": 3.228, "splay_ratio": 0.180, "d22": null, "d64": null, "eta": 157.414, "theta": -146.829, "eta_prime": -179.174, "theta_prime": -160.961, "eta_base": -129.297, "theta_base": -144.226, "v0": 8.648, "v1": -27.980, "v2": 35.688, "v3": -31.593, "v4": 14.606, "amplitude": 35.823, "phase_angle": 4.980, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.112, "filter_rmsd": 0.039, "frame": { "rmsd": 0.009, "origin": [ 249.353, 207.290, 162.666 ], "x_axis": [ -0.278, -0.610, -0.742 ], "y_axis": [ 0.925, -0.379, -0.035 ], "z_axis": [ -0.260, -0.696, 0.669 ], "quaternion": [ 0.503, 0.329, 0.240, -0.763 ] } }, { "index": 1827, "index_chain": 1827, "chain_name": "A", "nt_resnum": 1926, "nt_name": "G", "nt_code": "G", "nt_id": "///A/1926", "linked_nts": [ "///A/1925", "///A/1927" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,cap-acceptor", "alpha": -62.163, "beta": 169.992, "gamma": 50.135, "delta": 79.272, "epsilon": -101.325, "zeta": -32.654, "epsilon_zeta": -68.671, "bb_type": "--", "chi": -163.034, "glyco_bond": "anti", "C5prime_xyz": [ -1.189, 8.692, 0.727 ], "P_xyz": [ 1.421, 8.912, 0.944 ], "form": ".", "ssZp": 4.226, "Dp": 4.801, "splay_angle": 21.781, "splay_distance": 4.130, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 177.572, "theta": -100.869, "eta_prime": -172.648, "theta_prime": -107.809, "eta_base": -139.934, "theta_base": -100.767, "v0": 4.917, "v1": -26.946, "v2": 37.764, "v3": -35.911, "v4": 19.556, "amplitude": 38.535, "phase_angle": 11.480, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.886, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 247.388, 205.464, 164.463 ], "x_axis": [ 0.225, -0.690, -0.687 ], "y_axis": [ 0.926, -0.069, 0.372 ], "z_axis": [ -0.304, -0.720, 0.624 ], "quaternion": [ 0.667, 0.409, 0.144, -0.606 ] } }, { "index": 1828, "index_chain": 1828, "chain_name": "A", "nt_resnum": 1927, "nt_name": "U", "nt_code": "U", "nt_id": "///A/1927", "linked_nts": [ "///A/1926", "///A/1928" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,cap-donor,splayed-apart", "alpha": -92.971, "beta": 76.901, "gamma": -174.804, "delta": 85.815, "epsilon": -82.404, "zeta": -53.409, "epsilon_zeta": -28.995, "bb_type": "--", "chi": -176.849, "glyco_bond": "anti", "C5prime_xyz": [ -1.384, 8.462, 1.510 ], "P_xyz": [ -2.085, 10.699, 0.335 ], "form": ".", "ssZp": 4.225, "Dp": 4.462, "splay_angle": 92.053, "splay_distance": 13.201, "splay_ratio": 0.721, "d22": null, "d64": null, "eta": -157.307, "theta": -123.349, "eta_prime": -151.194, "theta_prime": -120.220, "eta_base": -127.620, "theta_base": -112.961, "v0": 1.513, "v1": -20.995, "v2": 31.332, "v3": -31.342, "v4": 18.883, "amplitude": 32.601, "phase_angle": 16.036, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.108, "frame": { "rmsd": 0.008, "origin": [ 245.405, 201.887, 163.886 ], "x_axis": [ 0.446, -0.676, -0.587 ], "y_axis": [ 0.811, 0.028, 0.584 ], "z_axis": [ -0.379, -0.736, 0.561 ], "quaternion": [ 0.713, 0.463, 0.073, -0.521 ] } }, { "index": 1829, "index_chain": 1829, "chain_name": "A", "nt_resnum": 1928, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1928", "linked_nts": [ "///A/1927", "///A/1929" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-stack,non-pair-contact,ss-non-loop,cap-acceptor,splayed-apart", "alpha": 84.978, "beta": -125.574, "gamma": -19.495, "delta": 86.010, "epsilon": -131.109, "zeta": -79.976, "epsilon_zeta": -51.133, "bb_type": "BI", "chi": -47.709, "glyco_bond": "--", "C5prime_xyz": [ -3.262, 4.872, -3.400 ], "P_xyz": [ -2.774, 5.862, -5.794 ], "form": ".", "ssZp": -3.418, "Dp": 4.819, "splay_angle": 75.647, "splay_distance": 12.798, "splay_ratio": 0.618, "d22": null, "d64": null, "eta": -101.466, "theta": -140.130, "eta_prime": -72.935, "theta_prime": -136.803, "eta_base": -43.693, "theta_base": -141.928, "v0": 12.053, "v1": -31.006, "v2": 37.074, "v3": -31.260, "v4": 12.191, "amplitude": 37.074, "phase_angle": 0.197, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.006, "origin": [ 248.380, 192.761, 172.949 ], "x_axis": [ -0.730, -0.307, 0.610 ], "y_axis": [ -0.614, 0.687, -0.389 ], "z_axis": [ -0.300, -0.659, -0.690 ], "quaternion": [ -0.258, -0.261, 0.881, -0.297 ] } }, { "index": 1830, "index_chain": 1830, "chain_name": "A", "nt_resnum": 1929, "nt_name": "A", "nt_code": "A", "nt_id": "///A/1929", "linked_nts": [ "///A/1928", null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "break,anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,phosphate", "alpha": 113.060, "beta": -141.299, "gamma": -87.113, "delta": 81.167, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -169.267, "glyco_bond": "anti", "C5prime_xyz": [ -1.479, 8.584, 1.065 ], "P_xyz": [ -1.626, 11.184, 1.291 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 2.853, "v1": -24.772, "v2": 36.026, "v3": -35.411, "v4": 20.535, "amplitude": 37.182, "phase_angle": 14.329, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.036, "frame": { "rmsd": 0.004, "origin": [ 235.890, 195.277, 174.155 ], "x_axis": [ -0.118, 0.365, 0.924 ], "y_axis": [ 0.861, 0.501, -0.088 ], "z_axis": [ -0.495, 0.785, -0.373 ], "quaternion": [ 0.502, -0.434, -0.706, -0.247 ] } }, { "index": 1831, "index_chain": 1831, "chain_name": "A", "nt_resnum": 2005, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2005", "linked_nts": [ null, "///A/2006" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop", "alpha": null, "beta": 87.680, "gamma": 152.516, "delta": 81.584, "epsilon": 162.269, "zeta": -84.924, "epsilon_zeta": -112.808, "bb_type": "BI", "chi": -156.185, "glyco_bond": "anti", "C5prime_xyz": [ -1.521, 8.865, 0.270 ], "P_xyz": [ -1.847, 9.938, -2.104 ], "form": ".", "ssZp": 3.951, "Dp": 4.027, "splay_angle": 45.343, "splay_distance": 7.529, "splay_ratio": 0.391, "d22": null, "d64": null, "eta": null, "theta": 111.592, "eta_prime": null, "theta_prime": 118.895, "eta_base": null, "theta_base": 101.072, "v0": -1.636, "v1": -20.028, "v2": 32.732, "v3": -34.611, "v4": 22.885, "amplitude": 35.112, "phase_angle": 21.215, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 226.324, 179.351, 203.849 ], "x_axis": [ -0.534, -0.465, -0.706 ], "y_axis": [ 0.821, -0.483, -0.304 ], "z_axis": [ -0.200, -0.742, 0.640 ], "quaternion": [ -0.394, -0.278, -0.321, 0.815 ] } }, { "index": 1832, "index_chain": 1832, "chain_name": "A", "nt_resnum": 2006, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2006", "linked_nts": [ "///A/2005", "///A/2007" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop", "alpha": 154.450, "beta": 167.979, "gamma": 163.406, "delta": 82.742, "epsilon": -109.291, "zeta": -75.470, "epsilon_zeta": -33.821, "bb_type": "--", "chi": 160.795, "glyco_bond": "anti", "C5prime_xyz": [ -1.860, 7.836, 2.583 ], "P_xyz": [ -0.290, 9.925, 2.735 ], "form": ".", "ssZp": 4.549, "Dp": 4.664, "splay_angle": 27.361, "splay_distance": 4.111, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 144.503, "theta": -146.790, "eta_prime": 130.673, "theta_prime": -138.998, "eta_base": 114.597, "theta_base": -70.772, "v0": 1.322, "v1": -22.642, "v2": 34.129, "v3": -34.279, "v4": 20.801, "amplitude": 35.595, "phase_angle": 16.501, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.195, "filter_rmsd": 0.044, "frame": { "rmsd": 0.013, "origin": [ 229.446, 184.255, 208.634 ], "x_axis": [ -0.340, 0.044, -0.939 ], "y_axis": [ 0.592, -0.766, -0.251 ], "z_axis": [ -0.731, -0.641, 0.234 ], "quaternion": [ -0.179, -0.546, -0.291, 0.765 ] } }, { "index": 1833, "index_chain": 1833, "chain_name": "A", "nt_resnum": 2007, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2007", "linked_nts": [ "///A/2006", "///A/2008" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate", "alpha": -64.072, "beta": 162.008, "gamma": 46.162, "delta": 83.075, "epsilon": -135.602, "zeta": -75.546, "epsilon_zeta": -60.056, "bb_type": "BI", "chi": -169.954, "glyco_bond": "anti", "C5prime_xyz": [ -1.234, 8.489, 1.134 ], "P_xyz": [ 1.350, 8.553, 1.529 ], "form": "A", "ssZp": 4.610, "Dp": 4.708, "splay_angle": 27.417, "splay_distance": 4.364, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 147.194, "theta": -132.467, "eta_prime": 172.767, "theta_prime": -129.787, "eta_base": -102.174, "theta_base": -101.726, "v0": 4.625, "v1": -25.655, "v2": 35.813, "v3": -34.170, "v4": 18.653, "amplitude": 36.555, "phase_angle": 11.559, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.269, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 226.686, 181.867, 206.742 ], "x_axis": [ 0.416, -0.633, -0.653 ], "y_axis": [ 0.569, -0.379, 0.730 ], "z_axis": [ -0.709, -0.675, 0.202 ], "quaternion": [ 0.557, 0.631, -0.025, -0.540 ] } }, { "index": 1834, "index_chain": 1834, "chain_name": "A", "nt_resnum": 2008, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2008", "linked_nts": [ "///A/2007", "///A/2009" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet", "alpha": -51.935, "beta": 165.176, "gamma": 53.133, "delta": 78.688, "epsilon": -148.170, "zeta": -75.722, "epsilon_zeta": -72.448, "bb_type": "BI", "chi": -162.363, "glyco_bond": "anti", "C5prime_xyz": [ -1.535, 8.820, 0.635 ], "P_xyz": [ 1.018, 9.364, 0.718 ], "form": "A", "ssZp": 4.459, "Dp": 4.621, "splay_angle": 17.597, "splay_distance": 2.959, "splay_ratio": 0.159, "d22": null, "d64": null, "eta": 170.429, "theta": -148.233, "eta_prime": -170.782, "theta_prime": -141.364, "eta_base": -124.383, "theta_base": -133.685, "v0": -0.248, "v1": -23.412, "v2": 36.867, "v3": -37.973, "v4": 24.084, "amplitude": 38.972, "phase_angle": 18.921, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.782, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 224.157, 178.601, 205.334 ], "x_axis": [ 0.697, -0.713, -0.077 ], "y_axis": [ 0.181, 0.070, 0.981 ], "z_axis": [ -0.694, -0.698, 0.178 ], "quaternion": [ 0.697, 0.602, -0.221, -0.321 ] } }, { "index": 1835, "index_chain": 1835, "chain_name": "A", "nt_resnum": 2009, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2009", "linked_nts": [ "///A/2008", "///A/2010" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart", "alpha": -51.631, "beta": -179.694, "gamma": 54.393, "delta": 143.226, "epsilon": -120.512, "zeta": -60.889, "epsilon_zeta": -59.623, "bb_type": "--", "chi": -120.971, "glyco_bond": "anti", "C5prime_xyz": [ -2.011, 8.652, -1.194 ], "P_xyz": [ 0.304, 9.697, -0.554 ], "form": ".", "ssZp": 1.361, "Dp": 1.397, "splay_angle": 149.182, "splay_distance": 16.672, "splay_ratio": 0.965, "d22": null, "d64": null, "eta": -166.040, "theta": -41.145, "eta_prime": -143.057, "theta_prime": -110.324, "eta_base": -133.938, "theta_base": 162.297, "v0": -24.003, "v1": 36.701, "v2": -34.840, "v3": 21.815, "v4": 1.161, "amplitude": 37.191, "phase_angle": 159.519, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.863, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 222.496, 176.538, 204.016 ], "x_axis": [ 0.909, -0.300, 0.289 ], "y_axis": [ -0.268, 0.111, 0.957 ], "z_axis": [ -0.319, -0.948, 0.020 ], "quaternion": [ 0.714, 0.667, -0.213, -0.011 ] } }, { "index": 1836, "index_chain": 1836, "chain_name": "A", "nt_resnum": 2010, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2010", "linked_nts": [ "///A/2009", "///A/2011" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,bulge,splayed-apart", "alpha": 159.506, "beta": 135.033, "gamma": -29.932, "delta": 148.007, "epsilon": -120.576, "zeta": -77.022, "epsilon_zeta": -43.554, "bb_type": "--", "chi": 95.413, "glyco_bond": "syn", "C5prime_xyz": [ -4.385, 4.938, 2.703 ], "P_xyz": [ -6.012, 2.881, 2.679 ], "form": ".", "ssZp": -0.708, "Dp": 1.408, "splay_angle": 135.759, "splay_distance": 17.522, "splay_ratio": 0.927, "d22": null, "d64": null, "eta": -77.768, "theta": -32.029, "eta_prime": -9.060, "theta_prime": -54.106, "eta_base": 71.336, "theta_base": -34.439, "v0": -17.309, "v1": 32.011, "v2": -33.722, "v3": 24.628, "v4": -4.751, "amplitude": 34.339, "phase_angle": 169.124, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.048, "frame": { "rmsd": 0.017, "origin": [ 207.638, 179.553, 210.949 ], "x_axis": [ -0.819, -0.086, 0.568 ], "y_axis": [ 0.201, -0.969, 0.144 ], "z_axis": [ 0.538, 0.232, 0.811 ], "quaternion": [ -0.076, 0.291, 0.099, 0.948 ] } }, { "index": 1837, "index_chain": 1837, "chain_name": "A", "nt_resnum": 2011, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2011", "linked_nts": [ "///A/2010", "///A/2012" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart", "alpha": 98.584, "beta": 125.480, "gamma": -21.473, "delta": 83.374, "epsilon": -158.362, "zeta": -75.700, "epsilon_zeta": -82.662, "bb_type": "BI", "chi": -172.291, "glyco_bond": "anti", "C5prime_xyz": [ -1.331, 8.520, 1.264 ], "P_xyz": [ 0.341, 8.447, 3.279 ], "form": "A", "ssZp": 4.517, "Dp": 4.546, "splay_angle": 26.807, "splay_distance": 4.128, "splay_ratio": 0.233, "d22": 5.012, "d64": 5.196, "eta": -158.011, "theta": -158.233, "eta_prime": -117.713, "theta_prime": -150.133, "eta_base": -119.671, "theta_base": -129.246, "v0": 3.184, "v1": -24.391, "v2": 35.144, "v3": -34.258, "v4": 19.611, "amplitude": 36.168, "phase_angle": 13.663, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.006, "origin": [ 222.235, 172.998, 203.810 ], "x_axis": [ 0.398, 0.044, 0.916 ], "y_axis": [ -0.868, 0.342, 0.360 ], "z_axis": [ -0.297, -0.939, 0.175 ], "quaternion": [ 0.692, 0.469, -0.439, 0.330 ] } }, { "index": 1838, "index_chain": 1838, "chain_name": "A", "nt_resnum": 2012, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2012", "linked_nts": [ "///A/2011", "///A/2013" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -71.400, "beta": -178.305, "gamma": 57.755, "delta": 83.028, "epsilon": -155.407, "zeta": -67.327, "epsilon_zeta": -88.080, "bb_type": "BI", "chi": -167.806, "glyco_bond": "anti", "C5prime_xyz": [ -1.292, 8.633, 1.004 ], "P_xyz": [ 1.259, 8.873, 1.543 ], "form": "A", "ssZp": 4.503, "Dp": 4.565, "splay_angle": 22.147, "splay_distance": 3.621, "splay_ratio": 0.198, "d22": 4.456, "d64": 4.687, "eta": 172.357, "theta": -143.310, "eta_prime": -178.661, "theta_prime": -144.011, "eta_base": -153.184, "theta_base": -129.018, "v0": 3.217, "v1": -24.780, "v2": 35.693, "v3": -34.789, "v4": 19.897, "amplitude": 36.731, "phase_angle": 13.655, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.877, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 222.836, 169.039, 202.805 ], "x_axis": [ -0.014, 0.220, 0.975 ], "y_axis": [ -0.942, 0.324, -0.086 ], "z_axis": [ -0.335, -0.920, 0.203 ], "quaternion": [ 0.615, 0.339, -0.533, 0.472 ] } }, { "index": 1839, "index_chain": 1839, "chain_name": "A", "nt_resnum": 2013, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2013", "linked_nts": [ "///A/2012", "///A/2014" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.744, "beta": -179.256, "gamma": 49.650, "delta": 78.311, "epsilon": -164.980, "zeta": -77.827, "epsilon_zeta": -87.153, "bb_type": "BI", "chi": -161.252, "glyco_bond": "anti", "C5prime_xyz": [ -1.594, 8.776, 0.574 ], "P_xyz": [ 0.872, 9.493, 1.065 ], "form": ".", "ssZp": 4.410, "Dp": 4.503, "splay_angle": 23.432, "splay_distance": 4.072, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 166.671, "theta": -137.552, "eta_prime": 179.872, "theta_prime": -145.508, "eta_base": -148.941, "theta_base": -129.339, "v0": -0.470, "v1": -22.973, "v2": 36.469, "v3": -37.745, "v4": 24.089, "amplitude": 38.643, "phase_angle": 19.312, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.923, "filter_rmsd": 0.097, "frame": { "rmsd": 0.008, "origin": [ 223.862, 165.696, 203.746 ], "x_axis": [ -0.426, 0.394, 0.814 ], "y_axis": [ -0.851, 0.133, -0.509 ], "z_axis": [ -0.309, -0.909, 0.279 ], "quaternion": [ 0.496, 0.202, -0.566, 0.627 ] } }, { "index": 1840, "index_chain": 1840, "chain_name": "A", "nt_resnum": 2014, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2014", "linked_nts": [ "///A/2013", "///A/2015" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 162.894, "beta": -164.691, "gamma": 169.611, "delta": 82.255, "epsilon": -143.799, "zeta": -91.110, "epsilon_zeta": -52.689, "bb_type": "BI", "chi": 176.881, "glyco_bond": "anti", "C5prime_xyz": [ -1.475, 8.335, 1.859 ], "P_xyz": [ 0.343, 10.069, 1.146 ], "form": "A", "ssZp": 4.593, "Dp": 4.631, "splay_angle": 21.270, "splay_distance": 3.719, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 163.054, "theta": -146.163, "eta_prime": 175.290, "theta_prime": -152.881, "eta_base": -151.281, "theta_base": -132.045, "v0": 2.844, "v1": -24.228, "v2": 35.282, "v3": -34.652, "v4": 20.053, "amplitude": 36.407, "phase_angle": 14.277, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.770, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 224.630, 162.774, 206.476 ], "x_axis": [ -0.667, 0.608, 0.430 ], "y_axis": [ -0.585, -0.070, -0.808 ], "z_axis": [ -0.461, -0.791, 0.402 ], "quaternion": [ 0.408, -0.011, -0.546, 0.731 ] } }, { "index": 1841, "index_chain": 1841, "chain_name": "A", "nt_resnum": 2015, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2015", "linked_nts": [ "///A/2014", "///A/2016" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 153.231, "beta": -150.867, "gamma": 173.659, "delta": 81.904, "epsilon": -124.319, "zeta": -88.255, "epsilon_zeta": -36.063, "bb_type": "--", "chi": -179.308, "glyco_bond": "anti", "C5prime_xyz": [ -1.419, 8.401, 1.641 ], "P_xyz": [ 0.338, 9.967, 0.513 ], "form": "A", "ssZp": 4.717, "Dp": 4.740, "splay_angle": 26.994, "splay_distance": 4.269, "splay_ratio": 0.236, "d22": null, "d64": null, "eta": 160.251, "theta": -160.092, "eta_prime": 176.833, "theta_prime": -157.010, "eta_base": -145.590, "theta_base": -129.048, "v0": 3.403, "v1": -25.013, "v2": 35.972, "v3": -35.048, "v4": 19.980, "amplitude": 36.997, "phase_angle": 13.517, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.519, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 224.378, 161.482, 209.954 ], "x_axis": [ -0.906, 0.423, 0.006 ], "y_axis": [ -0.233, -0.486, -0.842 ], "z_axis": [ -0.353, -0.765, 0.539 ], "quaternion": [ 0.191, -0.101, -0.469, 0.856 ] } }, { "index": 1842, "index_chain": 1842, "chain_name": "A", "nt_resnum": 2016, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2016", "linked_nts": [ "///A/2015", "///A/2017" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -48.830, "beta": 161.936, "gamma": 44.043, "delta": 80.111, "epsilon": -151.198, "zeta": -78.730, "epsilon_zeta": -72.468, "bb_type": "BI", "chi": -177.469, "glyco_bond": "anti", "C5prime_xyz": [ -1.841, 8.580, 1.490 ], "P_xyz": [ 0.579, 9.059, 2.341 ], "form": "A", "ssZp": 4.542, "Dp": 4.553, "splay_angle": 25.868, "splay_distance": 4.044, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 164.027, "theta": -153.141, "eta_prime": 178.725, "theta_prime": -150.960, "eta_base": -139.578, "theta_base": -128.583, "v0": -1.607, "v1": -21.198, "v2": 34.622, "v3": -36.564, "v4": 24.059, "amplitude": 37.100, "phase_angle": 21.061, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.453, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 222.437, 159.900, 213.412 ], "x_axis": [ -0.729, 0.317, -0.607 ], "y_axis": [ 0.383, -0.547, -0.744 ], "z_axis": [ -0.568, -0.775, 0.278 ], "quaternion": [ -0.021, -0.368, -0.475, 0.799 ] } }, { "index": 1843, "index_chain": 1843, "chain_name": "A", "nt_resnum": 2017, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2017", "linked_nts": [ "///A/2016", "///A/2018" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -69.484, "beta": 176.662, "gamma": 59.181, "delta": 82.231, "epsilon": -154.385, "zeta": -63.393, "epsilon_zeta": -90.992, "bb_type": "BI", "chi": -171.268, "glyco_bond": "anti", "C5prime_xyz": [ -1.440, 8.645, 1.178 ], "P_xyz": [ 1.092, 9.024, 1.735 ], "form": "A", "ssZp": 4.503, "Dp": 4.547, "splay_angle": 21.716, "splay_distance": 3.346, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": 171.626, "theta": -139.242, "eta_prime": -178.604, "theta_prime": -138.764, "eta_base": -145.153, "theta_base": -97.356, "v0": 1.447, "v1": -23.349, "v2": 35.050, "v3": -35.204, "v4": 21.293, "amplitude": 36.532, "phase_angle": 16.376, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.905, "filter_rmsd": 0.062, "frame": { "rmsd": 0.006, "origin": [ 219.761, 158.482, 216.092 ], "x_axis": [ -0.399, 0.018, -0.917 ], "y_axis": [ 0.737, -0.587, -0.333 ], "z_axis": [ -0.545, -0.809, 0.221 ], "quaternion": [ -0.242, -0.492, -0.384, 0.743 ] } }, { "index": 1844, "index_chain": 1844, "chain_name": "A", "nt_resnum": 2018, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2018", "linked_nts": [ "///A/2017", "///A/2019" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -84.932, "beta": 178.715, "gamma": 63.852, "delta": 85.257, "epsilon": -154.270, "zeta": -61.690, "epsilon_zeta": -92.581, "bb_type": "BI", "chi": -167.385, "glyco_bond": "anti", "C5prime_xyz": [ -1.365, 8.561, 0.988 ], "P_xyz": [ 1.223, 8.806, 1.331 ], "form": "A", "ssZp": 4.461, "Dp": 4.539, "splay_angle": 23.883, "splay_distance": 3.748, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 161.596, "theta": -134.188, "eta_prime": -179.667, "theta_prime": -133.646, "eta_base": -119.084, "theta_base": -98.602, "v0": 3.271, "v1": -23.820, "v2": 34.102, "v3": -33.146, "v4": 18.868, "amplitude": 35.050, "phase_angle": 13.358, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.565, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 217.053, 156.571, 215.634 ], "x_axis": [ 0.259, -0.330, -0.908 ], "y_axis": [ 0.788, -0.471, 0.396 ], "z_axis": [ -0.558, -0.818, 0.138 ], "quaternion": [ 0.481, 0.631, 0.181, -0.581 ] } }, { "index": 1845, "index_chain": 1845, "chain_name": "A", "nt_resnum": 2019, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2019", "linked_nts": [ "///A/2018", "///A/2020" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,multiplet,internal-loop,junction-loop,A-minor", "alpha": -76.038, "beta": -174.259, "gamma": 57.916, "delta": 84.518, "epsilon": -165.032, "zeta": -103.134, "epsilon_zeta": -61.898, "bb_type": "BI", "chi": -148.965, "glyco_bond": "anti", "C5prime_xyz": [ -1.278, 8.766, -0.093 ], "P_xyz": [ 1.304, 9.128, 0.140 ], "form": "A", "ssZp": 4.015, "Dp": 4.400, "splay_angle": 20.849, "splay_distance": 3.362, "splay_ratio": 0.181, "d22": 4.240, "d64": 4.168, "eta": 168.705, "theta": -139.316, "eta_prime": -172.139, "theta_prime": -143.761, "eta_base": -120.213, "theta_base": -122.665, "v0": 1.987, "v1": -22.612, "v2": 33.498, "v3": -33.296, "v4": 19.766, "amplitude": 34.751, "phase_angle": 15.433, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.789, "filter_rmsd": 0.060, "frame": { "rmsd": 0.009, "origin": [ 215.036, 153.758, 214.197 ], "x_axis": [ 0.735, -0.551, -0.395 ], "y_axis": [ 0.329, -0.219, 0.919 ], "z_axis": [ -0.593, -0.805, 0.021 ], "quaternion": [ 0.620, 0.695, -0.080, -0.355 ] } }, { "index": 1846, "index_chain": 1846, "chain_name": "A", "nt_resnum": 2020, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2020", "linked_nts": [ "///A/2019", "///A/2021" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,splayed-apart", "alpha": 154.547, "beta": -124.034, "gamma": 161.876, "delta": 82.023, "epsilon": -153.021, "zeta": -122.766, "epsilon_zeta": -30.256, "bb_type": "BI", "chi": -169.145, "glyco_bond": "anti", "C5prime_xyz": [ -1.617, 8.670, 1.036 ], "P_xyz": [ 0.400, 9.289, -0.493 ], "form": ".", "ssZp": 4.418, "Dp": 4.494, "splay_angle": 110.738, "splay_distance": 14.076, "splay_ratio": 0.823, "d22": null, "d64": null, "eta": 158.075, "theta": -161.427, "eta_prime": -179.024, "theta_prime": -178.082, "eta_base": -139.820, "theta_base": -137.989, "v0": -0.953, "v1": -21.008, "v2": 33.705, "v3": -35.237, "v4": 22.827, "amplitude": 35.896, "phase_angle": 20.123, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.068, "filter_rmsd": 0.100, "frame": { "rmsd": 0.009, "origin": [ 213.267, 151.031, 213.338 ], "x_axis": [ 0.835, -0.550, 0.036 ], "y_axis": [ -0.094, -0.079, 0.992 ], "z_axis": [ -0.543, -0.832, -0.117 ], "quaternion": [ 0.640, 0.712, -0.226, -0.178 ] } }, { "index": 1847, "index_chain": 1847, "chain_name": "A", "nt_resnum": 2021, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2021", "linked_nts": [ "///A/2020", "///A/2022" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart", "alpha": 66.601, "beta": 140.382, "gamma": 72.335, "delta": 151.517, "epsilon": -99.591, "zeta": 131.745, "epsilon_zeta": 128.663, "bb_type": "BII", "chi": -110.912, "glyco_bond": "anti", "C5prime_xyz": [ -1.851, 8.330, -1.584 ], "P_xyz": [ 0.716, 7.995, -1.999 ], "form": ".", "ssZp": 0.658, "Dp": 0.817, "splay_angle": 62.007, "splay_distance": 10.489, "splay_ratio": 0.515, "d22": null, "d64": null, "eta": -60.078, "theta": 140.128, "eta_prime": -36.846, "theta_prime": 88.374, "eta_base": -83.220, "theta_base": 72.798, "v0": -18.999, "v1": 35.156, "v2": -36.962, "v3": 26.899, "v4": -5.183, "amplitude": 37.652, "phase_angle": 169.019, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "7p", "suiteness": 0.010, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 202.845, 142.248, 216.856 ], "x_axis": [ 0.355, -0.432, 0.829 ], "y_axis": [ 0.284, 0.895, 0.345 ], "z_axis": [ -0.891, 0.113, 0.440 ], "quaternion": [ 0.820, 0.071, -0.524, -0.218 ] } }, { "index": 1848, "index_chain": 1848, "chain_name": "A", "nt_resnum": 2022, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2022", "linked_nts": [ "///A/2021", "///A/2023" ], "nt_type": "RNA", "dbn": ")", "summary": "turn,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,multiplet,bulge,internal-loop", "alpha": -75.131, "beta": 179.903, "gamma": -84.837, "delta": 88.971, "epsilon": -167.531, "zeta": -25.647, "epsilon_zeta": -141.884, "bb_type": "BI", "chi": 169.469, "glyco_bond": "anti", "C5prime_xyz": [ -1.006, 7.735, 2.228 ], "P_xyz": [ -0.100, 9.313, 4.093 ], "form": ".", "ssZp": 4.333, "Dp": 4.584, "splay_angle": 28.724, "splay_distance": 4.363, "splay_ratio": 0.257, "d22": 4.044, "d64": 3.825, "eta": 87.216, "theta": -146.899, "eta_prime": 68.621, "theta_prime": -127.118, "eta_base": 79.001, "theta_base": -65.293, "v0": 13.476, "v1": -31.979, "v2": 37.174, "v3": -30.312, "v4": 10.742, "amplitude": 37.202, "phase_angle": 357.798, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "0k", "suiteness": 0.417, "filter_rmsd": 0.106, "frame": { "rmsd": 0.008, "origin": [ 210.085, 146.959, 210.906 ], "x_axis": [ 0.472, -0.061, 0.879 ], "y_axis": [ -0.476, 0.822, 0.313 ], "z_axis": [ -0.742, -0.567, 0.359 ], "quaternion": [ 0.814, 0.270, -0.498, 0.127 ] } }, { "index": 1849, "index_chain": 1849, "chain_name": "A", "nt_resnum": 2023, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2023", "linked_nts": [ "///A/2022", "///A/2024" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -105.190, "beta": -149.500, "gamma": 70.167, "delta": 145.231, "epsilon": -158.352, "zeta": -138.911, "epsilon_zeta": -19.441, "bb_type": "--", "chi": -136.466, "glyco_bond": "anti", "C5prime_xyz": [ -1.424, 8.720, -0.351 ], "P_xyz": [ 0.803, 8.985, 1.016 ], "form": ".", "ssZp": 2.221, "Dp": 2.144, "splay_angle": 21.837, "splay_distance": 3.791, "splay_ratio": 0.192, "d22": 5.385, "d64": 5.209, "eta": 165.579, "theta": -129.224, "eta_prime": -148.383, "theta_prime": -149.360, "eta_base": -80.987, "theta_base": -137.551, "v0": -19.441, "v1": 33.106, "v2": -33.357, "v3": 22.882, "v4": -2.283, "amplitude": 34.523, "phase_angle": 165.066, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.009, "origin": [ 209.314, 144.806, 214.622 ], "x_axis": [ -0.136, 0.702, 0.699 ], "y_axis": [ -0.668, 0.456, -0.588 ], "z_axis": [ -0.732, -0.546, 0.407 ], "quaternion": [ 0.657, -0.016, -0.544, 0.521 ] } }, { "index": 1850, "index_chain": 1850, "chain_name": "A", "nt_resnum": 2024, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2024", "linked_nts": [ "///A/2023", "///A/2025" ], "nt_type": "RNA", "dbn": ")", "summary": "turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": 16.460, "beta": 150.087, "gamma": -30.762, "delta": 89.162, "epsilon": -171.953, "zeta": 47.877, "epsilon_zeta": 140.171, "bb_type": "--", "chi": -122.680, "glyco_bond": "anti", "C5prime_xyz": [ -1.522, 8.384, -1.611 ], "P_xyz": [ 0.421, 10.102, -1.206 ], "form": ".", "ssZp": 2.854, "Dp": 4.184, "splay_angle": 23.142, "splay_distance": 3.901, "splay_ratio": 0.208, "d22": 4.476, "d64": 5.044, "eta": 162.379, "theta": -48.449, "eta_prime": 165.691, "theta_prime": -80.966, "eta_base": -168.986, "theta_base": -118.269, "v0": 1.304, "v1": -19.154, "v2": 28.650, "v3": -28.690, "v4": 17.396, "amplitude": 29.836, "phase_angle": 16.206, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.099, "frame": { "rmsd": 0.011, "origin": [ 208.792, 141.194, 215.649 ], "x_axis": [ -0.562, 0.681, 0.468 ], "y_axis": [ -0.580, 0.078, -0.811 ], "z_axis": [ -0.589, -0.728, 0.351 ], "quaternion": [ 0.466, -0.045, -0.568, 0.677 ] } }, { "index": 1851, "index_chain": 1851, "chain_name": "A", "nt_resnum": 2025, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2025", "linked_nts": [ "///A/2024", "///A/2026" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate", "alpha": 166.900, "beta": 156.991, "gamma": 45.395, "delta": 150.198, "epsilon": -78.897, "zeta": -177.627, "epsilon_zeta": 98.730, "bb_type": "BII", "chi": -147.198, "glyco_bond": "anti", "C5prime_xyz": [ -1.584, 8.681, 0.299 ], "P_xyz": [ 0.611, 8.688, 1.712 ], "form": ".", "ssZp": 0.356, "Dp": 0.395, "splay_angle": 47.338, "splay_distance": 8.061, "splay_ratio": 0.401, "d22": null, "d64": null, "eta": 65.919, "theta": -168.704, "eta_prime": 131.659, "theta_prime": 176.024, "eta_base": 119.749, "theta_base": -168.982, "v0": -19.862, "v1": 35.163, "v2": -36.204, "v3": 25.690, "v4": -3.861, "amplitude": 37.138, "phase_angle": 167.122, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.709, "filter_rmsd": 0.063, "frame": { "rmsd": 0.008, "origin": [ 205.473, 139.340, 216.521 ], "x_axis": [ 0.719, -0.681, -0.140 ], "y_axis": [ -0.404, -0.246, -0.881 ], "z_axis": [ 0.565, 0.690, -0.452 ], "quaternion": [ 0.505, -0.777, 0.349, -0.137 ] } }, { "index": 1852, "index_chain": 1852, "chain_name": "A", "nt_resnum": 2026, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2026", "linked_nts": [ "///A/2025", "///A/2027" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -87.883, "beta": 71.462, "gamma": 145.190, "delta": 78.072, "epsilon": -136.406, "zeta": -76.646, "epsilon_zeta": -59.761, "bb_type": "BI", "chi": -175.856, "glyco_bond": "anti", "C5prime_xyz": [ -1.569, 8.565, 1.437 ], "P_xyz": [ -1.424, 9.895, -0.819 ], "form": "A", "ssZp": 4.634, "Dp": 4.666, "splay_angle": 22.500, "splay_distance": 3.678, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": -129.241, "theta": 171.532, "eta_prime": -134.372, "theta_prime": -178.498, "eta_base": -111.936, "theta_base": -154.121, "v0": 0.188, "v1": -23.338, "v2": 36.439, "v3": -37.317, "v4": 23.375, "amplitude": 38.388, "phase_angle": 18.335, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.043, "frame": { "rmsd": 0.009, "origin": [ 200.273, 144.858, 219.259 ], "x_axis": [ -0.093, 0.981, -0.171 ], "y_axis": [ -0.306, -0.192, -0.933 ], "z_axis": [ -0.947, -0.035, 0.318 ], "quaternion": [ 0.508, -0.442, -0.382, 0.633 ] } }, { "index": 1853, "index_chain": 1853, "chain_name": "A", "nt_resnum": 2027, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2027", "linked_nts": [ "///A/2026", "///A/2028" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -53.676, "beta": -173.927, "gamma": 29.356, "delta": 80.324, "epsilon": -176.088, "zeta": -80.997, "epsilon_zeta": -95.091, "bb_type": "BI", "chi": -154.273, "glyco_bond": "anti", "C5prime_xyz": [ -1.313, 8.717, 0.165 ], "P_xyz": [ 1.043, 9.488, 0.971 ], "form": "A", "ssZp": 4.248, "Dp": 4.431, "splay_angle": 24.277, "splay_distance": 4.066, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 161.210, "theta": -145.961, "eta_prime": 172.510, "theta_prime": -148.793, "eta_base": -152.949, "theta_base": -130.171, "v0": 1.869, "v1": -24.448, "v2": 36.491, "v3": -36.437, "v4": 21.804, "amplitude": 37.937, "phase_angle": 15.868, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.194, "filter_rmsd": 0.043, "frame": { "rmsd": 0.010, "origin": [ 197.987, 145.899, 221.945 ], "x_axis": [ 0.002, 0.679, -0.734 ], "y_axis": [ -0.302, -0.700, -0.648 ], "z_axis": [ -0.953, 0.223, 0.203 ], "quaternion": [ 0.356, -0.612, -0.154, 0.689 ] } }, { "index": 1854, "index_chain": 1854, "chain_name": "A", "nt_resnum": 2028, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2028", "linked_nts": [ "///A/2027", "///A/2029" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 154.803, "beta": -148.393, "gamma": 175.796, "delta": 81.204, "epsilon": -119.275, "zeta": -80.755, "epsilon_zeta": -38.520, "bb_type": "--", "chi": -179.799, "glyco_bond": "anti", "C5prime_xyz": [ -1.194, 8.367, 1.708 ], "P_xyz": [ 0.680, 9.834, 0.662 ], "form": "A", "ssZp": 4.695, "Dp": 4.737, "splay_angle": 19.299, "splay_distance": 3.263, "splay_ratio": 0.177, "d22": null, "d64": null, "eta": 173.834, "theta": -151.234, "eta_prime": -175.136, "theta_prime": -150.109, "eta_base": -143.150, "theta_base": -122.650, "v0": 4.295, "v1": -26.093, "v2": 36.940, "v3": -35.484, "v4": 19.619, "amplitude": 37.803, "phase_angle": 12.264, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.750, "filter_rmsd": 0.065, "frame": { "rmsd": 0.007, "origin": [ 195.321, 148.451, 223.651 ], "x_axis": [ -0.142, 0.344, -0.928 ], "y_axis": [ -0.288, -0.912, -0.294 ], "z_axis": [ -0.947, 0.225, 0.229 ], "quaternion": [ 0.209, -0.621, -0.023, 0.755 ] } }, { "index": 1855, "index_chain": 1855, "chain_name": "A", "nt_resnum": 2029, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2029", "linked_nts": [ "///A/2028", "///A/2030" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -54.859, "beta": 157.484, "gamma": 51.652, "delta": 74.998, "epsilon": -154.626, "zeta": -76.163, "epsilon_zeta": -78.463, "bb_type": "BI", "chi": -166.536, "glyco_bond": "anti", "C5prime_xyz": [ -1.880, 8.849, 0.827 ], "P_xyz": [ 0.571, 9.705, 0.894 ], "form": "A", "ssZp": 4.528, "Dp": 4.572, "splay_angle": 28.637, "splay_distance": 4.494, "splay_ratio": 0.249, "d22": null, "d64": null, "eta": 156.131, "theta": -156.983, "eta_prime": 175.547, "theta_prime": -156.370, "eta_base": -139.233, "theta_base": -131.629, "v0": -3.551, "v1": -21.554, "v2": 37.053, "v3": -40.143, "v4": 27.556, "amplitude": 40.419, "phase_angle": 23.547, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.462, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 193.336, 151.037, 223.503 ], "x_axis": [ -0.143, -0.235, -0.961 ], "y_axis": [ -0.311, -0.911, 0.270 ], "z_axis": [ -0.939, 0.338, 0.057 ], "quaternion": [ 0.026, -0.654, 0.209, 0.727 ] } }, { "index": 1856, "index_chain": 1856, "chain_name": "A", "nt_resnum": 2030, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2030", "linked_nts": [ "///A/2029", "///A/2031" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -54.796, "beta": -178.194, "gamma": 40.913, "delta": 80.977, "epsilon": -165.867, "zeta": -87.970, "epsilon_zeta": -77.896, "bb_type": "BI", "chi": -176.771, "glyco_bond": "anti", "C5prime_xyz": [ -1.618, 8.484, 1.489 ], "P_xyz": [ 0.603, 8.848, 2.808 ], "form": "A", "ssZp": 4.410, "Dp": 4.450, "splay_angle": 24.414, "splay_distance": 3.838, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 171.733, "theta": -143.063, "eta_prime": 179.794, "theta_prime": -143.222, "eta_base": -144.124, "theta_base": -115.891, "v0": -0.113, "v1": -22.154, "v2": 34.804, "v3": -35.874, "v4": 22.695, "amplitude": 36.772, "phase_angle": 18.830, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.631, "filter_rmsd": 0.041, "frame": { "rmsd": 0.011, "origin": [ 189.956, 153.899, 222.739 ], "x_axis": [ 0.109, -0.725, -0.681 ], "y_axis": [ 0.022, -0.683, 0.730 ], "z_axis": [ -0.994, -0.095, -0.059 ], "quaternion": [ 0.303, 0.680, -0.258, -0.615 ] } }, { "index": 1857, "index_chain": 1857, "chain_name": "A", "nt_resnum": 2031, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2031", "linked_nts": [ "///A/2030", "///A/2032" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -179.067, "beta": -146.560, "gamma": 146.414, "delta": 81.784, "epsilon": -125.193, "zeta": -89.626, "epsilon_zeta": -35.567, "bb_type": "--", "chi": 174.064, "glyco_bond": "anti", "C5prime_xyz": [ -1.509, 8.321, 1.987 ], "P_xyz": [ 0.925, 9.113, 1.517 ], "form": "A", "ssZp": 4.600, "Dp": 4.651, "splay_angle": 22.283, "splay_distance": 3.529, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 165.478, "theta": -146.550, "eta_prime": 178.522, "theta_prime": -148.339, "eta_base": -141.614, "theta_base": -126.616, "v0": 0.817, "v1": -22.525, "v2": 34.509, "v3": -35.054, "v4": 21.612, "amplitude": 36.168, "phase_angle": 17.420, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 186.794, 154.747, 220.737 ], "x_axis": [ 0.146, -0.979, -0.141 ], "y_axis": [ -0.017, -0.145, 0.989 ], "z_axis": [ -0.989, -0.142, -0.038 ], "quaternion": [ 0.491, 0.576, -0.432, -0.490 ] } }, { "index": 1858, "index_chain": 1858, "chain_name": "A", "nt_resnum": 2032, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2032", "linked_nts": [ "///A/2031", "///A/2033" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -43.600, "beta": 163.106, "gamma": 33.138, "delta": 79.128, "epsilon": -151.825, "zeta": -89.856, "epsilon_zeta": -61.969, "bb_type": "BI", "chi": -167.832, "glyco_bond": "anti", "C5prime_xyz": [ -1.496, 8.642, 0.973 ], "P_xyz": [ 0.964, 9.087, 1.713 ], "form": ".", "ssZp": 4.563, "Dp": 4.620, "splay_angle": 22.033, "splay_distance": 3.910, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 160.207, "theta": -129.674, "eta_prime": 173.660, "theta_prime": -136.045, "eta_base": -147.023, "theta_base": -116.306, "v0": 1.296, "v1": -24.118, "v2": 36.543, "v3": -36.836, "v4": 22.421, "amplitude": 38.162, "phase_angle": 16.747, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.182, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 183.878, 154.335, 218.792 ], "x_axis": [ 0.204, -0.877, 0.436 ], "y_axis": [ -0.092, 0.426, 0.900 ], "z_axis": [ -0.975, -0.224, 0.006 ], "quaternion": [ 0.639, 0.439, -0.551, -0.307 ] } }, { "index": 1859, "index_chain": 1859, "chain_name": "A", "nt_resnum": 2033, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2033", "linked_nts": [ "///A/2032", "///A/2034" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 142.531, "beta": -144.681, "gamma": -174.710, "delta": 81.080, "epsilon": -118.746, "zeta": -70.881, "epsilon_zeta": -47.865, "bb_type": "--", "chi": 176.015, "glyco_bond": "anti", "C5prime_xyz": [ -1.510, 8.359, 1.884 ], "P_xyz": [ 0.112, 10.159, 0.891 ], "form": ".", "ssZp": 4.719, "Dp": 4.731, "splay_angle": 30.102, "splay_distance": 4.641, "splay_ratio": 0.261, "d22": null, "d64": null, "eta": 168.973, "theta": -146.833, "eta_prime": -177.962, "theta_prime": -141.032, "eta_base": -140.334, "theta_base": -85.487, "v0": 2.638, "v1": -24.954, "v2": 36.569, "v3": -36.038, "v4": 21.094, "amplitude": 37.808, "phase_angle": 14.706, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.540, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 181.624, 151.525, 217.271 ], "x_axis": [ 0.204, -0.564, 0.800 ], "y_axis": [ -0.258, 0.758, 0.600 ], "z_axis": [ -0.944, -0.329, 0.009 ], "quaternion": [ 0.702, 0.331, -0.621, -0.109 ] } }, { "index": 1860, "index_chain": 1860, "chain_name": "A", "nt_resnum": 2034, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2034", "linked_nts": [ "///A/2033", "///A/2035" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -63.493, "beta": 155.905, "gamma": 61.614, "delta": 81.915, "epsilon": -107.712, "zeta": -71.958, "epsilon_zeta": -35.754, "bb_type": "--", "chi": -176.397, "glyco_bond": "anti", "C5prime_xyz": [ -1.631, 8.516, 1.444 ], "P_xyz": [ 0.946, 8.903, 1.622 ], "form": ".", "ssZp": 4.538, "Dp": 4.651, "splay_angle": 51.584, "splay_distance": 7.789, "splay_ratio": 0.436, "d22": null, "d64": null, "eta": 166.549, "theta": -107.993, "eta_prime": -169.817, "theta_prime": -106.105, "eta_base": -97.154, "theta_base": -66.302, "v0": -0.093, "v1": -21.981, "v2": 34.382, "v3": -35.403, "v4": 22.440, "amplitude": 36.313, "phase_angle": 18.767, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.465, "filter_rmsd": 0.041, "frame": { "rmsd": 0.011, "origin": [ 179.100, 149.039, 220.268 ], "x_axis": [ -0.016, 0.343, 0.939 ], "y_axis": [ -0.309, 0.892, -0.331 ], "z_axis": [ -0.951, -0.295, 0.092 ], "quaternion": [ 0.701, -0.013, -0.674, 0.232 ] } }, { "index": 1861, "index_chain": 1861, "chain_name": "A", "nt_resnum": 2035, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2035", "linked_nts": [ "///A/2034", "///A/2036" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -69.832, "beta": -178.162, "gamma": 50.639, "delta": 83.170, "epsilon": -152.477, "zeta": -65.381, "epsilon_zeta": -87.096, "bb_type": "BI", "chi": 178.595, "glyco_bond": "anti", "C5prime_xyz": [ -1.139, 8.307, 1.779 ], "P_xyz": [ 1.263, 8.188, 2.815 ], "form": "A", "ssZp": 4.587, "Dp": 4.625, "splay_angle": 24.299, "splay_distance": 3.819, "splay_ratio": 0.216, "d22": 4.817, "d64": 4.825, "eta": 154.485, "theta": -139.836, "eta_prime": 179.834, "theta_prime": -137.472, "eta_base": -117.842, "theta_base": -120.471, "v0": 5.317, "v1": -26.509, "v2": 36.414, "v3": -34.303, "v4": 18.302, "amplitude": 37.035, "phase_angle": 10.504, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.246, "filter_rmsd": 0.065, "frame": { "rmsd": 0.008, "origin": [ 172.690, 151.740, 223.774 ], "x_axis": [ 0.443, 0.896, -0.029 ], "y_axis": [ 0.223, -0.142, -0.965 ], "z_axis": [ -0.868, 0.421, -0.262 ], "quaternion": [ 0.510, -0.680, -0.412, 0.330 ] } }, { "index": 1862, "index_chain": 1862, "chain_name": "A", "nt_resnum": 2036, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2036", "linked_nts": [ "///A/2035", "///A/2037" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -84.373, "beta": -166.756, "gamma": 58.071, "delta": 81.332, "epsilon": -154.392, "zeta": -64.283, "epsilon_zeta": -90.109, "bb_type": "BI", "chi": -166.447, "glyco_bond": "anti", "C5prime_xyz": [ -1.357, 8.663, 0.882 ], "P_xyz": [ 1.133, 9.073, 1.574 ], "form": "A", "ssZp": 4.525, "Dp": 4.588, "splay_angle": 20.420, "splay_distance": 3.295, "splay_ratio": 0.182, "d22": 4.219, "d64": 4.118, "eta": 166.064, "theta": -142.433, "eta_prime": 178.071, "theta_prime": -141.386, "eta_base": -151.188, "theta_base": -112.347, "v0": 1.862, "v1": -24.196, "v2": 36.094, "v3": -35.969, "v4": 21.516, "amplitude": 37.511, "phase_angle": 15.797, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.600, "filter_rmsd": 0.100, "frame": { "rmsd": 0.009, "origin": [ 169.587, 153.354, 225.307 ], "x_axis": [ 0.554, 0.654, -0.514 ], "y_axis": [ -0.056, -0.587, -0.808 ], "z_axis": [ -0.830, 0.477, -0.289 ], "quaternion": [ -0.412, 0.779, 0.192, -0.431 ] } }, { "index": 1863, "index_chain": 1863, "chain_name": "A", "nt_resnum": 2037, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2037", "linked_nts": [ "///A/2036", "///A/2038" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -82.736, "beta": -178.349, "gamma": 60.487, "delta": 79.096, "epsilon": -154.558, "zeta": -69.902, "epsilon_zeta": -84.657, "bb_type": "BI", "chi": -161.267, "glyco_bond": "anti", "C5prime_xyz": [ -1.358, 8.792, 0.569 ], "P_xyz": [ 1.199, 9.331, 0.724 ], "form": ".", "ssZp": 4.462, "Dp": 4.608, "splay_angle": 27.550, "splay_distance": 4.437, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": 161.025, "theta": -150.112, "eta_prime": 175.447, "theta_prime": -150.740, "eta_base": -139.931, "theta_base": -135.446, "v0": 1.421, "v1": -24.648, "v2": 37.180, "v3": -37.345, "v4": 22.640, "amplitude": 38.779, "phase_angle": 16.509, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.677, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 168.041, 156.260, 225.152 ], "x_axis": [ 0.522, 0.117, -0.845 ], "y_axis": [ -0.474, -0.784, -0.401 ], "z_axis": [ -0.710, 0.609, -0.353 ], "quaternion": [ -0.310, 0.815, -0.109, -0.477 ] } }, { "index": 1864, "index_chain": 1864, "chain_name": "A", "nt_resnum": 2038, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2038", "linked_nts": [ "///A/2037", "///A/2039" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -75.539, "beta": -169.129, "gamma": 45.293, "delta": 79.424, "epsilon": -154.618, "zeta": -64.761, "epsilon_zeta": -89.857, "bb_type": "BI", "chi": -177.859, "glyco_bond": "anti", "C5prime_xyz": [ -1.764, 8.569, 1.499 ], "P_xyz": [ 0.396, 9.122, 2.855 ], "form": "A", "ssZp": 4.563, "Dp": 4.575, "splay_angle": 25.080, "splay_distance": 4.116, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 161.588, "theta": -147.862, "eta_prime": 167.912, "theta_prime": -143.157, "eta_base": -164.711, "theta_base": -116.016, "v0": -0.701, "v1": -22.765, "v2": 36.209, "v3": -37.578, "v4": 24.128, "amplitude": 38.431, "phase_angle": 19.582, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.743, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 166.290, 160.267, 224.401 ], "x_axis": [ 0.654, -0.520, -0.550 ], "y_axis": [ -0.544, -0.828, 0.136 ], "z_axis": [ -0.526, 0.210, -0.824 ], "quaternion": [ -0.020, 0.909, -0.293, -0.296 ] } }, { "index": 1865, "index_chain": 1865, "chain_name": "A", "nt_resnum": 2039, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2039", "linked_nts": [ "///A/2038", "///A/2040" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -71.150, "beta": -172.631, "gamma": 52.374, "delta": 80.025, "epsilon": -155.142, "zeta": -67.274, "epsilon_zeta": -87.868, "bb_type": "BI", "chi": -168.767, "glyco_bond": "anti", "C5prime_xyz": [ -1.739, 8.765, 0.982 ], "P_xyz": [ 0.601, 9.468, 1.907 ], "form": "A", "ssZp": 4.462, "Dp": 4.508, "splay_angle": 23.922, "splay_distance": 3.789, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 169.811, "theta": -147.572, "eta_prime": -178.055, "theta_prime": -143.847, "eta_base": -140.478, "theta_base": -107.659, "v0": -2.595, "v1": -20.738, "v2": 34.831, "v3": -37.268, "v4": 25.114, "amplitude": 37.680, "phase_angle": 22.425, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.874, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 166.452, 162.513, 220.955 ], "x_axis": [ 0.303, -0.904, -0.302 ], "y_axis": [ -0.785, -0.417, 0.459 ], "z_axis": [ -0.541, 0.098, -0.836 ], "quaternion": [ 0.113, 0.799, -0.528, -0.264 ] } }, { "index": 1866, "index_chain": 1866, "chain_name": "A", "nt_resnum": 2040, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2040", "linked_nts": [ "///A/2039", "///A/2041" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate", "alpha": -70.145, "beta": 179.040, "gamma": 55.502, "delta": 82.240, "epsilon": -146.118, "zeta": -64.999, "epsilon_zeta": -81.119, "bb_type": "BI", "chi": -163.390, "glyco_bond": "anti", "C5prime_xyz": [ -1.483, 8.705, 0.720 ], "P_xyz": [ 1.038, 9.192, 1.182 ], "form": ".", "ssZp": 4.417, "Dp": 4.579, "splay_angle": 27.596, "splay_distance": 4.305, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": 169.862, "theta": -134.556, "eta_prime": -176.479, "theta_prime": -130.877, "eta_base": -128.552, "theta_base": -82.739, "v0": 0.447, "v1": -22.754, "v2": 35.110, "v3": -35.806, "v4": 22.311, "amplitude": 36.898, "phase_angle": 17.907, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.938, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 166.001, 162.181, 217.207 ], "x_axis": [ -0.215, -0.971, 0.106 ], "y_axis": [ -0.803, 0.237, 0.546 ], "z_axis": [ -0.556, 0.032, -0.831 ], "quaternion": [ -0.219, -0.587, 0.755, 0.191 ] } }, { "index": 1867, "index_chain": 1867, "chain_name": "A", "nt_resnum": 2041, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2041", "linked_nts": [ "///A/2040", "///A/2042" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -65.242, "beta": 169.621, "gamma": 57.356, "delta": 82.248, "epsilon": 171.513, "zeta": -89.753, "epsilon_zeta": -98.733, "bb_type": "BI", "chi": -156.949, "glyco_bond": "anti", "C5prime_xyz": [ -1.219, 8.739, 0.358 ], "P_xyz": [ 1.384, 8.986, 0.279 ], "form": ".", "ssZp": 4.183, "Dp": 4.265, "splay_angle": 66.176, "splay_distance": 10.716, "splay_ratio": 0.551, "d22": null, "d64": null, "eta": 163.554, "theta": 169.850, "eta_prime": -168.756, "theta_prime": 157.828, "eta_base": -99.360, "theta_base": 145.380, "v0": 2.798, "v1": -24.334, "v2": 35.423, "v3": -34.800, "v4": 20.214, "amplitude": 36.563, "phase_angle": 14.346, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.949, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 163.340, 159.654, 214.956 ], "x_axis": [ -0.748, -0.445, 0.493 ], "y_axis": [ -0.407, 0.894, 0.188 ], "z_axis": [ -0.524, -0.060, -0.849 ], "quaternion": [ -0.272, -0.228, 0.934, 0.034 ] } }, { "index": 1868, "index_chain": 1868, "chain_name": "A", "nt_resnum": 2042, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2042", "linked_nts": [ "///A/2041", "///A/2043" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate", "alpha": -146.524, "beta": 149.889, "gamma": 158.580, "delta": 83.393, "epsilon": -150.372, "zeta": -63.693, "epsilon_zeta": -86.680, "bb_type": "BI", "chi": -160.990, "glyco_bond": "anti", "C5prime_xyz": [ -1.398, 8.698, 0.609 ], "P_xyz": [ -0.479, 10.531, -1.019 ], "form": ".", "ssZp": 4.348, "Dp": 4.536, "splay_angle": 23.592, "splay_distance": 3.688, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": -167.354, "theta": -172.782, "eta_prime": 174.892, "theta_prime": -161.826, "eta_base": 155.721, "theta_base": -115.550, "v0": 1.456, "v1": -22.731, "v2": 34.090, "v3": -34.224, "v4": 20.697, "amplitude": 35.523, "phase_angle": 16.326, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.010, "filter_rmsd": 0.044, "frame": { "rmsd": 0.009, "origin": [ 170.462, 163.828, 208.123 ], "x_axis": [ -0.272, -0.961, 0.048 ], "y_axis": [ -0.943, 0.276, 0.184 ], "z_axis": [ -0.190, 0.004, -0.982 ], "quaternion": [ -0.075, -0.599, 0.795, 0.059 ] } }, { "index": 1869, "index_chain": 1869, "chain_name": "A", "nt_resnum": 2043, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2043", "linked_nts": [ "///A/2042", "///A/2044" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": -74.233, "beta": -174.018, "gamma": 58.656, "delta": 86.726, "epsilon": -158.890, "zeta": -82.002, "epsilon_zeta": -76.888, "bb_type": "BI", "chi": -131.159, "glyco_bond": "anti", "C5prime_xyz": [ -1.376, 8.517, -1.125 ], "P_xyz": [ 1.214, 8.832, -1.427 ], "form": ".", "ssZp": 3.286, "Dp": 4.428, "splay_angle": 22.578, "splay_distance": 3.720, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 171.593, "theta": -157.489, "eta_prime": -169.641, "theta_prime": -158.420, "eta_base": -117.527, "theta_base": -138.866, "v0": 2.356, "v1": -21.504, "v2": 31.373, "v3": -30.895, "v4": 18.069, "amplitude": 32.416, "phase_angle": 14.575, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.800, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 169.384, 161.912, 205.162 ], "x_axis": [ -0.850, -0.506, 0.148 ], "y_axis": [ -0.527, 0.828, -0.193 ], "z_axis": [ -0.025, -0.242, -0.970 ], "quaternion": [ -0.045, -0.270, 0.955, -0.114 ] } }, { "index": 1870, "index_chain": 1870, "chain_name": "A", "nt_resnum": 2044, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2044", "linked_nts": [ "///A/2043", "///A/2045" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -76.807, "beta": 164.304, "gamma": 68.116, "delta": 84.540, "epsilon": -128.286, "zeta": -51.651, "epsilon_zeta": -76.636, "bb_type": "--", "chi": -134.859, "glyco_bond": "anti", "C5prime_xyz": [ -1.205, 8.490, -0.988 ], "P_xyz": [ 1.142, 8.286, -2.144 ], "form": ".", "ssZp": 3.147, "Dp": 4.759, "splay_angle": 50.246, "splay_distance": 7.903, "splay_ratio": 0.426, "d22": null, "d64": null, "eta": 171.565, "theta": -104.269, "eta_prime": 179.795, "theta_prime": -102.370, "eta_base": -153.809, "theta_base": -70.272, "v0": 5.615, "v1": -26.216, "v2": 35.671, "v3": -33.416, "v4": 17.598, "amplitude": 36.212, "phase_angle": 9.911, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.532, "filter_rmsd": 0.040, "frame": { "rmsd": 0.013, "origin": [ 169.114, 161.433, 201.483 ], "x_axis": [ -0.989, -0.140, 0.055 ], "y_axis": [ -0.150, 0.891, -0.429 ], "z_axis": [ 0.010, -0.432, -0.902 ], "quaternion": [ -0.012, -0.074, 0.972, -0.221 ] } }, { "index": 1871, "index_chain": 1871, "chain_name": "A", "nt_resnum": 2045, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2045", "linked_nts": [ "///A/2044", "///A/2046" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -75.674, "beta": -178.453, "gamma": 62.200, "delta": 85.429, "epsilon": -148.095, "zeta": -65.036, "epsilon_zeta": -83.059, "bb_type": "BI", "chi": -168.117, "glyco_bond": "anti", "C5prime_xyz": [ -1.330, 8.558, 1.029 ], "P_xyz": [ 1.243, 8.773, 1.482 ], "form": "A", "ssZp": 4.516, "Dp": 4.585, "splay_angle": 23.954, "splay_distance": 3.783, "splay_ratio": 0.209, "d22": 4.007, "d64": 4.071, "eta": 163.963, "theta": -133.279, "eta_prime": -164.230, "theta_prime": -132.550, "eta_base": -110.683, "theta_base": -97.823, "v0": 3.222, "v1": -23.531, "v2": 33.669, "v3": -32.736, "v4": 18.653, "amplitude": 34.607, "phase_angle": 13.374, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.533, "filter_rmsd": 0.105, "frame": { "rmsd": 0.008, "origin": [ 162.313, 163.511, 198.037 ], "x_axis": [ -0.206, 0.873, 0.443 ], "y_axis": [ 0.885, 0.359, -0.297 ], "z_axis": [ -0.418, 0.331, -0.846 ], "quaternion": [ -0.277, 0.566, 0.776, 0.011 ] } }, { "index": 1872, "index_chain": 1872, "chain_name": "A", "nt_resnum": 2046, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2046", "linked_nts": [ "///A/2045", "///A/2047" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,cap-acceptor,splayed-apart", "alpha": -76.733, "beta": 169.754, "gamma": 67.702, "delta": 85.266, "epsilon": -102.518, "zeta": -141.015, "epsilon_zeta": 38.497, "bb_type": "--", "chi": -166.376, "glyco_bond": "anti", "C5prime_xyz": [ -1.629, 8.689, 0.878 ], "P_xyz": [ 0.941, 9.184, 0.964 ], "form": ".", "ssZp": 4.178, "Dp": 4.534, "splay_angle": 130.950, "splay_distance": 17.454, "splay_ratio": 0.910, "d22": null, "d64": null, "eta": 179.288, "theta": -143.851, "eta_prime": -164.853, "theta_prime": -172.387, "eta_base": -116.170, "theta_base": 156.673, "v0": -1.408, "v1": -19.773, "v2": 32.085, "v3": -33.776, "v4": 22.219, "amplitude": 34.336, "phase_angle": 20.861, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.590, "filter_rmsd": 0.102, "frame": { "rmsd": 0.009, "origin": [ 159.842, 165.804, 196.320 ], "x_axis": [ 0.430, 0.884, 0.183 ], "y_axis": [ 0.794, -0.273, -0.544 ], "z_axis": [ -0.431, 0.379, -0.819 ], "quaternion": [ -0.291, 0.794, 0.528, -0.078 ] } }, { "index": 1873, "index_chain": 1873, "chain_name": "A", "nt_resnum": 2047, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2047", "linked_nts": [ "///A/2046", "///A/2048" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,junction-loop,splayed-apart", "alpha": 109.193, "beta": -165.532, "gamma": 38.425, "delta": 79.203, "epsilon": -155.923, "zeta": -74.234, "epsilon_zeta": -81.689, "bb_type": "BI", "chi": -166.285, "glyco_bond": "anti", "C5prime_xyz": [ -1.450, 8.667, 0.872 ], "P_xyz": [ 0.774, 9.377, 2.035 ], "form": "A", "ssZp": 4.528, "Dp": 4.591, "splay_angle": 26.148, "splay_distance": 4.183, "splay_ratio": 0.231, "d22": null, "d64": null, "eta": -19.562, "theta": -160.937, "eta_prime": -4.895, "theta_prime": -155.073, "eta_base": 1.985, "theta_base": -138.693, "v0": 1.615, "v1": -24.699, "v2": 37.085, "v3": -37.171, "v4": 22.409, "amplitude": 38.628, "phase_angle": 16.249, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3d", "suiteness": 0.012, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 159.240, 155.452, 182.280 ], "x_axis": [ 0.947, -0.303, -0.110 ], "y_axis": [ 0.321, 0.848, 0.421 ], "z_axis": [ -0.035, -0.434, 0.900 ], "quaternion": [ 0.961, 0.223, 0.020, -0.162 ] } }, { "index": 1874, "index_chain": 1874, "chain_name": "A", "nt_resnum": 2048, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2048", "linked_nts": [ "///A/2047", "///A/2049" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate", "alpha": -70.781, "beta": 178.009, "gamma": 60.842, "delta": 78.647, "epsilon": -169.292, "zeta": -2.082, "epsilon_zeta": -167.210, "bb_type": "--", "chi": -162.404, "glyco_bond": "anti", "C5prime_xyz": [ -1.582, 8.734, 0.626 ], "P_xyz": [ 0.935, 9.421, 0.666 ], "form": ".", "ssZp": 4.463, "Dp": 4.510, "splay_angle": 31.542, "splay_distance": 5.680, "splay_ratio": 0.293, "d22": null, "d64": null, "eta": 170.146, "theta": -96.115, "eta_prime": -178.729, "theta_prime": -111.234, "eta_base": -155.279, "theta_base": -79.929, "v0": 0.678, "v1": -24.369, "v2": 37.433, "v3": -38.053, "v4": 23.574, "amplitude": 39.275, "phase_angle": 17.615, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.860, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 157.937, 152.077, 184.380 ], "x_axis": [ 0.998, 0.045, 0.038 ], "y_axis": [ -0.058, 0.877, 0.477 ], "z_axis": [ -0.012, -0.479, 0.878 ], "quaternion": [ 0.969, 0.247, -0.013, 0.027 ] } }, { "index": 1875, "index_chain": 1875, "chain_name": "A", "nt_resnum": 2049, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2049", "linked_nts": [ "///A/2048", "///A/2050" ], "nt_type": "RNA", "dbn": "{", "summary": "pseudoknotted,anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,junction-loop,A-minor,splayed-apart", "alpha": -178.709, "beta": 134.741, "gamma": 162.994, "delta": 80.322, "epsilon": -115.770, "zeta": -124.481, "epsilon_zeta": 8.712, "bb_type": "--", "chi": -175.977, "glyco_bond": "anti", "C5prime_xyz": [ -1.299, 8.479, 1.458 ], "P_xyz": [ -0.623, 10.768, 0.378 ], "form": ".", "ssZp": 4.653, "Dp": 4.750, "splay_angle": 100.693, "splay_distance": 13.141, "splay_ratio": 0.770, "d22": null, "d64": null, "eta": 163.451, "theta": 142.496, "eta_prime": -175.055, "theta_prime": 136.062, "eta_base": -116.419, "theta_base": 86.541, "v0": 2.902, "v1": -25.262, "v2": 36.879, "v3": -36.177, "v4": 20.962, "amplitude": 38.061, "phase_angle": 14.321, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.046, "frame": { "rmsd": 0.013, "origin": [ 162.757, 150.422, 186.887 ], "x_axis": [ 0.659, 0.702, 0.271 ], "y_axis": [ -0.740, 0.540, 0.400 ], "z_axis": [ 0.134, -0.464, 0.876 ], "quaternion": [ 0.877, 0.246, -0.039, 0.411 ] } }, { "index": 1876, "index_chain": 1876, "chain_name": "A", "nt_resnum": 2050, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2050", "linked_nts": [ "///A/2049", "///A/2051" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart", "alpha": -47.943, "beta": 174.585, "gamma": -74.470, "delta": 149.341, "epsilon": -96.242, "zeta": -66.454, "epsilon_zeta": -29.788, "bb_type": "--", "chi": 67.729, "glyco_bond": "syn", "C5prime_xyz": [ -5.115, 4.042, 1.622 ], "P_xyz": [ -7.372, 2.857, 2.197 ], "form": ".", "ssZp": -0.631, "Dp": 0.781, "splay_angle": 100.536, "splay_distance": 15.013, "splay_ratio": 0.769, "d22": null, "d64": null, "eta": 108.103, "theta": -79.847, "eta_prime": 98.160, "theta_prime": -75.946, "eta_base": 71.923, "theta_base": -46.595, "v0": -20.137, "v1": 35.095, "v2": -35.745, "v3": 25.118, "v4": -3.326, "amplitude": 36.790, "phase_angle": 166.314, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 150.117, 147.137, 188.346 ], "x_axis": [ -0.790, -0.586, -0.182 ], "y_axis": [ 0.451, -0.755, 0.477 ], "z_axis": [ -0.416, 0.295, 0.860 ], "quaternion": [ -0.281, -0.162, 0.209, 0.923 ] } }, { "index": 1877, "index_chain": 1877, "chain_name": "A", "nt_resnum": 2051, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2051", "linked_nts": [ "///A/2050", "///A/2052" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -62.786, "beta": -155.142, "gamma": 69.648, "delta": 147.887, "epsilon": -86.940, "zeta": -96.502, "epsilon_zeta": 9.562, "bb_type": "--", "chi": -142.650, "glyco_bond": "anti", "C5prime_xyz": [ -2.076, 8.734, -0.023 ], "P_xyz": [ -0.129, 9.378, 1.607 ], "form": ".", "ssZp": 0.463, "Dp": 0.562, "splay_angle": 158.272, "splay_distance": 18.573, "splay_ratio": 0.982, "d22": null, "d64": null, "eta": -152.549, "theta": -52.196, "eta_prime": -101.904, "theta_prime": -98.402, "eta_base": -115.713, "theta_base": 159.574, "v0": -24.063, "v1": 38.249, "v2": -37.036, "v3": 24.078, "v4": -0.248, "amplitude": 39.038, "phase_angle": 161.569, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.592, "filter_rmsd": 0.100, "frame": { "rmsd": 0.007, "origin": [ 164.132, 152.230, 190.090 ], "x_axis": [ -0.655, 0.626, 0.423 ], "y_axis": [ -0.643, -0.756, 0.125 ], "z_axis": [ 0.398, -0.190, 0.897 ], "quaternion": [ 0.349, 0.226, -0.018, 0.909 ] } }, { "index": 1878, "index_chain": 1878, "chain_name": "A", "nt_resnum": 2052, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2052", "linked_nts": [ "///A/2051", "///A/2053" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,phosphate,splayed-apart", "alpha": -96.778, "beta": -137.979, "gamma": 148.653, "delta": 84.179, "epsilon": -141.581, "zeta": -76.637, "epsilon_zeta": -64.945, "bb_type": "BI", "chi": -177.015, "glyco_bond": "anti", "C5prime_xyz": [ -1.341, 8.418, 1.529 ], "P_xyz": [ 1.011, 8.979, 0.542 ], "form": "A", "ssZp": 4.586, "Dp": 4.612, "splay_angle": 23.376, "splay_distance": 3.646, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": -116.618, "theta": -143.959, "eta_prime": -63.830, "theta_prime": -149.872, "eta_base": 52.574, "theta_base": -125.113, "v0": 2.209, "v1": -22.873, "v2": 33.583, "v3": -33.298, "v4": 19.648, "amplitude": 34.782, "phase_angle": 15.087, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 164.928, 134.413, 184.907 ], "x_axis": [ -0.779, 0.267, -0.568 ], "y_axis": [ -0.102, 0.839, 0.534 ], "z_axis": [ 0.619, 0.474, -0.626 ], "quaternion": [ 0.330, 0.046, 0.901, 0.280 ] } }, { "index": 1879, "index_chain": 1879, "chain_name": "A", "nt_resnum": 2053, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2053", "linked_nts": [ "///A/2052", "///A/2054" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,hairpin-loop", "alpha": -62.502, "beta": 170.142, "gamma": 52.596, "delta": 82.416, "epsilon": -153.530, "zeta": -74.417, "epsilon_zeta": -79.113, "bb_type": "BI", "chi": -166.554, "glyco_bond": "anti", "C5prime_xyz": [ -1.296, 8.689, 0.921 ], "P_xyz": [ 1.268, 8.968, 1.340 ], "form": "A", "ssZp": 4.491, "Dp": 4.565, "splay_angle": 25.619, "splay_distance": 4.012, "splay_ratio": 0.222, "d22": 4.583, "d64": 4.671, "eta": 166.221, "theta": -148.703, "eta_prime": -177.793, "theta_prime": -147.927, "eta_base": -133.012, "theta_base": -126.099, "v0": 1.497, "v1": -23.183, "v2": 34.786, "v3": -34.893, "v4": 21.092, "amplitude": 36.243, "phase_angle": 16.299, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.945, "filter_rmsd": 0.063, "frame": { "rmsd": 0.007, "origin": [ 166.573, 134.859, 181.684 ], "x_axis": [ -0.694, 0.708, -0.126 ], "y_axis": [ 0.385, 0.514, 0.767 ], "z_axis": [ 0.608, 0.484, -0.630 ], "quaternion": [ 0.218, 0.325, 0.842, 0.371 ] } }, { "index": 1880, "index_chain": 1880, "chain_name": "A", "nt_resnum": 2054, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2054", "linked_nts": [ "///A/2053", "///A/2055" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,hairpin-loop", "alpha": -62.792, "beta": 175.756, "gamma": 53.307, "delta": 82.731, "epsilon": -146.047, "zeta": -76.120, "epsilon_zeta": -69.927, "bb_type": "BI", "chi": -165.162, "glyco_bond": "anti", "C5prime_xyz": [ -1.248, 8.693, 0.850 ], "P_xyz": [ 1.291, 8.991, 1.362 ], "form": "A", "ssZp": 4.454, "Dp": 4.590, "splay_angle": 21.891, "splay_distance": 3.482, "splay_ratio": 0.191, "d22": 4.290, "d64": 4.260, "eta": 173.855, "theta": -145.099, "eta_prime": -175.241, "theta_prime": -143.989, "eta_base": -141.632, "theta_base": -120.300, "v0": 1.901, "v1": -23.475, "v2": 34.907, "v3": -34.806, "v4": 20.790, "amplitude": 36.262, "phase_angle": 15.711, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.969, "filter_rmsd": 0.061, "frame": { "rmsd": 0.008, "origin": [ 168.091, 135.929, 178.128 ], "x_axis": [ -0.456, 0.822, 0.340 ], "y_axis": [ 0.658, 0.054, 0.751 ], "z_axis": [ 0.600, 0.566, -0.566 ], "quaternion": [ 0.090, 0.514, 0.720, 0.457 ] } }, { "index": 1881, "index_chain": 1881, "chain_name": "A", "nt_resnum": 2055, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2055", "linked_nts": [ "///A/2054", "///A/2056" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,hairpin-loop,cap-donor,phosphate", "alpha": -61.908, "beta": 166.757, "gamma": 53.200, "delta": 80.459, "epsilon": -166.919, "zeta": -71.113, "epsilon_zeta": -95.806, "bb_type": "BI", "chi": -162.889, "glyco_bond": "anti", "C5prime_xyz": [ -1.458, 8.712, 0.672 ], "P_xyz": [ 1.107, 9.195, 0.768 ], "form": "A", "ssZp": 4.432, "Dp": 4.501, "splay_angle": 19.757, "splay_distance": 3.444, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": 162.979, "theta": -127.126, "eta_prime": 179.868, "theta_prime": -135.910, "eta_base": -139.206, "theta_base": -106.583, "v0": 1.682, "v1": -24.394, "v2": 36.555, "v3": -36.565, "v4": 22.001, "amplitude": 38.048, "phase_angle": 16.108, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.959, "filter_rmsd": 0.097, "frame": { "rmsd": 0.011, "origin": [ 168.894, 138.065, 175.498 ], "x_axis": [ -0.093, 0.703, 0.705 ], "y_axis": [ 0.834, -0.332, 0.441 ], "z_axis": [ 0.544, 0.629, -0.556 ], "quaternion": [ -0.070, 0.670, 0.574, 0.466 ] } }, { "index": 1882, "index_chain": 1882, "chain_name": "A", "nt_resnum": 2056, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2056", "linked_nts": [ "///A/2055", "///A/2057" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,junction-loop,A-minor,phosphate", "alpha": 169.107, "beta": -158.154, "gamma": 161.317, "delta": 84.233, "epsilon": -134.775, "zeta": -76.988, "epsilon_zeta": -57.787, "bb_type": "BI", "chi": -175.506, "glyco_bond": "anti", "C5prime_xyz": [ -1.502, 8.631, 1.437 ], "P_xyz": [ 0.617, 9.925, 0.623 ], "form": "A", "ssZp": 4.346, "Dp": 4.455, "splay_angle": 20.278, "splay_distance": 3.295, "splay_ratio": 0.177, "d22": null, "d64": null, "eta": 165.570, "theta": -152.986, "eta_prime": -176.816, "theta_prime": -151.444, "eta_base": -127.267, "theta_base": -115.507, "v0": -2.242, "v1": -18.409, "v2": 30.814, "v3": -33.029, "v4": 22.243, "amplitude": 33.331, "phase_angle": 22.409, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.424, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 168.681, 141.428, 174.788 ], "x_axis": [ 0.326, 0.238, 0.915 ], "y_axis": [ 0.807, -0.574, -0.138 ], "z_axis": [ 0.492, 0.784, -0.379 ], "quaternion": [ -0.305, 0.755, 0.346, 0.466 ] } }, { "index": 1883, "index_chain": 1883, "chain_name": "A", "nt_resnum": 2057, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2057", "linked_nts": [ "///A/2056", "///A/2058" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,junction-loop", "alpha": -56.860, "beta": 162.125, "gamma": 49.074, "delta": 82.237, "epsilon": -132.633, "zeta": -84.239, "epsilon_zeta": -48.394, "bb_type": "BI", "chi": -159.062, "glyco_bond": "anti", "C5prime_xyz": [ -1.695, 8.815, 0.431 ], "P_xyz": [ 0.828, 9.412, 0.734 ], "form": ".", "ssZp": 4.160, "Dp": 4.520, "splay_angle": 29.371, "splay_distance": 4.655, "splay_ratio": 0.255, "d22": null, "d64": null, "eta": 165.470, "theta": -140.231, "eta_prime": -177.008, "theta_prime": -135.922, "eta_base": -127.730, "theta_base": -88.303, "v0": -3.263, "v1": -18.863, "v2": 32.484, "v3": -35.275, "v4": 24.309, "amplitude": 35.489, "phase_angle": 23.747, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.810, "filter_rmsd": 0.101, "frame": { "rmsd": 0.009, "origin": [ 169.685, 144.564, 174.668 ], "x_axis": [ 0.745, -0.165, 0.647 ], "y_axis": [ 0.476, -0.547, -0.688 ], "z_axis": [ 0.468, 0.820, -0.329 ], "quaternion": [ -0.466, 0.809, 0.096, 0.344 ] } }, { "index": 1884, "index_chain": 1884, "chain_name": "A", "nt_resnum": 2058, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2058", "linked_nts": [ "///A/2057", "///A/2059" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,junction-loop,splayed-apart", "alpha": -55.990, "beta": 148.725, "gamma": 59.068, "delta": 82.569, "epsilon": -125.457, "zeta": -89.762, "epsilon_zeta": -35.695, "bb_type": "--", "chi": -160.189, "glyco_bond": "anti", "C5prime_xyz": [ -1.269, 8.684, 0.545 ], "P_xyz": [ 1.280, 8.731, -0.032 ], "form": ".", "ssZp": 4.339, "Dp": 4.747, "splay_angle": 103.189, "splay_distance": 16.158, "splay_ratio": 0.787, "d22": null, "d64": null, "eta": 167.823, "theta": -132.820, "eta_prime": -172.681, "theta_prime": -158.214, "eta_base": -111.127, "theta_base": 179.877, "v0": 4.538, "v1": -26.212, "v2": 36.713, "v3": -35.071, "v4": 19.285, "amplitude": 37.506, "phase_angle": 11.800, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.590, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 173.736, 146.819, 174.245 ], "x_axis": [ 0.840, -0.539, -0.070 ], "y_axis": [ -0.215, -0.212, -0.953 ], "z_axis": [ 0.499, 0.816, -0.294 ], "quaternion": [ 0.578, -0.766, 0.246, -0.140 ] } }, { "index": 1885, "index_chain": 1885, "chain_name": "A", "nt_resnum": 2059, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2059", "linked_nts": [ "///A/2058", "///A/2060" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,splayed-apart", "alpha": -100.699, "beta": -148.878, "gamma": -67.080, "delta": 146.316, "epsilon": -90.060, "zeta": -178.256, "epsilon_zeta": 88.196, "bb_type": "BII", "chi": -117.277, "glyco_bond": "anti", "C5prime_xyz": [ -2.197, 8.469, -1.349 ], "P_xyz": [ -2.438, 10.928, -2.244 ], "form": ".", "ssZp": 0.686, "Dp": 0.689, "splay_angle": 46.274, "splay_distance": 7.307, "splay_ratio": 0.406, "d22": null, "d64": null, "eta": 74.006, "theta": 163.743, "eta_prime": 73.419, "theta_prime": -159.289, "eta_base": 41.544, "theta_base": -168.195, "v0": -23.711, "v1": 37.315, "v2": -35.897, "v3": 23.140, "v4": 0.149, "amplitude": 37.965, "phase_angle": 161.003, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "1o", "suiteness": 0.099, "filter_rmsd": 0.037, "frame": { "rmsd": 0.007, "origin": [ 171.133, 161.267, 167.495 ], "x_axis": [ -0.971, 0.148, -0.186 ], "y_axis": [ -0.153, -0.988, 0.009 ], "z_axis": [ -0.182, 0.037, 0.983 ], "quaternion": [ 0.076, -0.093, 0.011, 0.993 ] } }, { "index": 1886, "index_chain": 1886, "chain_name": "A", "nt_resnum": 2060, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2060", "linked_nts": [ "///A/2059", "///A/2061" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-stack,non-pair-contact,hairpin-loop,junction-loop,cap-acceptor", "alpha": 178.371, "beta": -118.672, "gamma": 87.590, "delta": 146.610, "epsilon": -122.062, "zeta": -86.666, "epsilon_zeta": -35.397, "bb_type": "--", "chi": -67.783, "glyco_bond": "--", "C5prime_xyz": [ -3.059, 6.754, -3.058 ], "P_xyz": [ -0.501, 7.223, -3.388 ], "form": ".", "ssZp": 0.500, "Dp": 1.430, "splay_angle": 59.297, "splay_distance": 8.911, "splay_ratio": 0.556, "d22": null, "d64": null, "eta": 161.829, "theta": -52.288, "eta_prime": 168.249, "theta_prime": -130.680, "eta_base": 173.221, "theta_base": 169.046, "v0": -19.709, "v1": 33.637, "v2": -34.041, "v3": 23.560, "v4": -2.616, "amplitude": 35.167, "phase_angle": 165.461, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 175.909, 159.760, 172.816 ], "x_axis": [ -0.966, 0.187, -0.179 ], "y_axis": [ -0.185, -0.982, -0.029 ], "z_axis": [ -0.181, 0.005, 0.983 ], "quaternion": [ 0.094, -0.091, -0.006, 0.991 ] } }, { "index": 1887, "index_chain": 1887, "chain_name": "A", "nt_resnum": 2061, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2061", "linked_nts": [ "///A/2060", "///A/2062" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-pair-contact,hairpin-loop,junction-loop,splayed-apart", "alpha": 172.634, "beta": 151.805, "gamma": 49.993, "delta": 146.020, "epsilon": -80.935, "zeta": -141.090, "epsilon_zeta": 60.155, "bb_type": "--", "chi": 71.755, "glyco_bond": "syn", "C5prime_xyz": [ -5.204, 4.497, 1.749 ], "P_xyz": [ -5.068, 1.881, 1.721 ], "form": ".", "ssZp": -0.429, "Dp": 0.469, "splay_angle": 128.946, "splay_distance": 16.981, "splay_ratio": 0.903, "d22": null, "d64": null, "eta": 38.605, "theta": -120.113, "eta_prime": 100.869, "theta_prime": -139.286, "eta_base": 97.417, "theta_base": -81.409, "v0": -22.859, "v1": 36.295, "v2": -35.123, "v3": 22.872, "v4": -0.211, "amplitude": 37.027, "phase_angle": 161.547, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2z", "suiteness": 0.515, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 181.295, 154.205, 177.237 ], "x_axis": [ 0.493, 0.353, 0.795 ], "y_axis": [ -0.442, -0.685, 0.579 ], "z_axis": [ 0.749, -0.637, -0.182 ], "quaternion": [ 0.396, 0.768, -0.029, 0.502 ] } }, { "index": 1888, "index_chain": 1888, "chain_name": "A", "nt_resnum": 2062, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2062", "linked_nts": [ "///A/2061", "///A/2063" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C2'-endo,BII,isolated-canonical,non-canonical,non-pair-contact,multiplet,hairpin-loop,junction-loop,phosphate,splayed-apart", "alpha": -44.562, "beta": 179.298, "gamma": 99.967, "delta": 147.256, "epsilon": -92.027, "zeta": -153.236, "epsilon_zeta": 61.209, "bb_type": "BII", "chi": -104.280, "glyco_bond": "anti", "C5prime_xyz": [ -2.173, 8.127, -1.936 ], "P_xyz": [ 0.276, 8.216, -2.845 ], "form": ".", "ssZp": 0.628, "Dp": 0.826, "splay_angle": 93.690, "splay_distance": 14.514, "splay_ratio": 0.730, "d22": null, "d64": null, "eta": -72.475, "theta": -116.914, "eta_prime": -48.051, "theta_prime": -176.225, "eta_base": -112.219, "theta_base": 157.389, "v0": -20.840, "v1": 34.844, "v2": -34.760, "v3": 23.626, "v4": -1.963, "amplitude": 36.109, "phase_angle": 164.288, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 166.449, 146.732, 173.761 ], "x_axis": [ 0.388, -0.460, -0.799 ], "y_axis": [ 0.796, -0.270, 0.541 ], "z_axis": [ -0.464, -0.846, 0.262 ], "quaternion": [ 0.587, 0.591, 0.143, -0.535 ] } }, { "index": 1889, "index_chain": 1889, "chain_name": "A", "nt_resnum": 2063, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2063", "linked_nts": [ "///A/2062", "///A/2064" ], "nt_type": "RNA", "dbn": "}", "summary": "pseudoknotted,turn,anti,~C2'-endo,BI,isolated-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,junction-loop,A-minor,splayed-apart", "alpha": 92.178, "beta": -133.790, "gamma": 43.098, "delta": 146.245, "epsilon": -156.606, "zeta": -91.253, "epsilon_zeta": -65.353, "bb_type": "BI", "chi": -130.124, "glyco_bond": "anti", "C5prime_xyz": [ -1.346, 8.597, -0.678 ], "P_xyz": [ 0.148, 9.592, 1.236 ], "form": "B", "ssZp": 1.905, "Dp": 1.951, "splay_angle": 22.113, "splay_distance": 3.820, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": -4.569, "theta": -116.462, "eta_prime": 33.059, "theta_prime": -121.405, "eta_base": 46.603, "theta_base": -98.658, "v0": -18.080, "v1": 32.513, "v2": -33.848, "v3": 24.218, "v4": -4.049, "amplitude": 34.617, "phase_angle": 167.904, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4p", "suiteness": 0.451, "filter_rmsd": 0.102, "frame": { "rmsd": 0.009, "origin": [ 162.668, 150.048, 187.375 ], "x_axis": [ 0.548, 0.744, 0.381 ], "y_axis": [ 0.832, -0.437, -0.342 ], "z_axis": [ -0.088, 0.505, -0.859 ], "quaternion": [ -0.251, 0.843, 0.467, 0.087 ] } }, { "index": 1890, "index_chain": 1890, "chain_name": "A", "nt_resnum": 2064, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2064", "linked_nts": [ "///A/2063", "///A/2065" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,phosphate,splayed-apart", "alpha": -68.800, "beta": -174.728, "gamma": 34.457, "delta": 140.677, "epsilon": -86.644, "zeta": -78.157, "epsilon_zeta": -8.488, "bb_type": "--", "chi": -94.932, "glyco_bond": "anti", "C5prime_xyz": [ -2.819, 7.937, -2.351 ], "P_xyz": [ -0.918, 9.704, -2.690 ], "form": ".", "ssZp": 0.633, "Dp": 0.717, "splay_angle": 106.806, "splay_distance": 15.768, "splay_ratio": 0.803, "d22": null, "d64": null, "eta": -178.210, "theta": -45.957, "eta_prime": -153.045, "theta_prime": -68.779, "eta_base": -126.782, "theta_base": -35.144, "v0": -26.591, "v1": 37.735, "v2": -33.848, "v3": 19.407, "v4": 4.253, "amplitude": 37.429, "phase_angle": 154.732, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 161.840, 152.165, 184.306 ], "x_axis": [ 0.874, 0.442, 0.204 ], "y_axis": [ 0.476, -0.689, -0.547 ], "z_axis": [ -0.101, 0.575, -0.812 ], "quaternion": [ -0.306, 0.918, 0.250, 0.028 ] } }, { "index": 1891, "index_chain": 1891, "chain_name": "A", "nt_resnum": 2065, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2065", "linked_nts": [ "///A/2064", "///A/2066" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,junction-loop,A-minor,ribose-zipper,cap-donor,splayed-apart", "alpha": -98.046, "beta": -164.965, "gamma": 50.935, "delta": 82.144, "epsilon": -144.296, "zeta": -78.650, "epsilon_zeta": -65.646, "bb_type": "BI", "chi": -165.104, "glyco_bond": "anti", "C5prime_xyz": [ -1.301, 8.749, 0.829 ], "P_xyz": [ 1.065, 9.192, 1.858 ], "form": "A", "ssZp": 4.442, "Dp": 4.580, "splay_angle": 29.622, "splay_distance": 4.644, "splay_ratio": 0.256, "d22": null, "d64": null, "eta": 126.378, "theta": -149.602, "eta_prime": 170.602, "theta_prime": -143.031, "eta_base": -172.356, "theta_base": -116.662, "v0": 0.725, "v1": -22.457, "v2": 34.387, "v3": -34.913, "v4": 21.593, "amplitude": 36.052, "phase_angle": 17.478, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.422, "filter_rmsd": 0.063, "frame": { "rmsd": 0.008, "origin": [ 169.093, 141.906, 174.779 ], "x_axis": [ 0.276, 0.131, 0.952 ], "y_axis": [ -0.886, 0.418, 0.199 ], "z_axis": [ -0.372, -0.899, 0.232 ], "quaternion": [ 0.694, 0.396, -0.477, 0.367 ] } }, { "index": 1892, "index_chain": 1892, "chain_name": "A", "nt_resnum": 2066, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2066", "linked_nts": [ "///A/2065", "///A/2067" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,ribose-zipper", "alpha": -70.163, "beta": -173.710, "gamma": 49.753, "delta": 85.174, "epsilon": -151.943, "zeta": -69.752, "epsilon_zeta": -82.191, "bb_type": "BI", "chi": -166.375, "glyco_bond": "anti", "C5prime_xyz": [ -1.163, 8.628, 0.961 ], "P_xyz": [ 1.256, 8.831, 1.949 ], "form": "A", "ssZp": 4.399, "Dp": 4.492, "splay_angle": 21.724, "splay_distance": 3.465, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": 169.953, "theta": -142.879, "eta_prime": 178.704, "theta_prime": -141.459, "eta_base": -149.558, "theta_base": -114.502, "v0": 1.480, "v1": -21.637, "v2": 32.444, "v3": -32.508, "v4": 19.619, "amplitude": 33.786, "phase_angle": 16.200, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.865, "filter_rmsd": 0.047, "frame": { "rmsd": 0.016, "origin": [ 168.601, 137.465, 176.046 ], "x_axis": [ -0.043, 0.711, 0.702 ], "y_axis": [ -0.822, 0.375, -0.430 ], "z_axis": [ -0.569, -0.595, 0.568 ], "quaternion": [ 0.689, 0.060, -0.461, 0.556 ] } }, { "index": 1893, "index_chain": 1893, "chain_name": "A", "nt_resnum": 2067, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2067", "linked_nts": [ "///A/2066", "///A/2068" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem", "alpha": -69.766, "beta": 170.516, "gamma": 56.052, "delta": 81.806, "epsilon": -150.832, "zeta": -66.357, "epsilon_zeta": -84.475, "bb_type": "BI", "chi": -168.842, "glyco_bond": "anti", "C5prime_xyz": [ -1.464, 8.715, 1.022 ], "P_xyz": [ 1.081, 9.141, 1.456 ], "form": "A", "ssZp": 4.493, "Dp": 4.549, "splay_angle": 21.737, "splay_distance": 3.533, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": 163.916, "theta": -140.796, "eta_prime": 179.888, "theta_prime": -141.749, "eta_base": -137.132, "theta_base": -113.966, "v0": -0.281, "v1": -21.888, "v2": 34.427, "v3": -35.564, "v4": 22.614, "amplitude": 36.419, "phase_angle": 19.042, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.939, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 167.897, 135.369, 178.714 ], "x_axis": [ -0.428, 0.846, 0.319 ], "y_axis": [ -0.664, -0.054, -0.746 ], "z_axis": [ -0.614, -0.531, 0.584 ], "quaternion": [ 0.525, -0.103, -0.444, 0.719 ] } }, { "index": 1894, "index_chain": 1894, "chain_name": "A", "nt_resnum": 2068, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2068", "linked_nts": [ "///A/2067", "///A/2069" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -81.033, "beta": 167.446, "gamma": 71.971, "delta": 80.667, "epsilon": -155.377, "zeta": -71.088, "epsilon_zeta": -84.289, "bb_type": "BI", "chi": -171.640, "glyco_bond": "anti", "C5prime_xyz": [ -1.763, 8.712, 1.155 ], "P_xyz": [ 0.753, 9.435, 1.197 ], "form": "A", "ssZp": 4.480, "Dp": 4.507, "splay_angle": 21.944, "splay_distance": 3.473, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 163.688, "theta": -149.482, "eta_prime": -177.633, "theta_prime": -151.589, "eta_base": -130.308, "theta_base": -125.714, "v0": -1.591, "v1": -21.223, "v2": 34.589, "v3": -36.457, "v4": 23.997, "amplitude": 37.045, "phase_angle": 20.980, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.399, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 166.615, 134.699, 181.937 ], "x_axis": [ -0.694, 0.701, -0.164 ], "y_axis": [ -0.343, -0.523, -0.780 ], "z_axis": [ -0.632, -0.486, 0.603 ], "quaternion": [ 0.311, -0.237, -0.377, 0.840 ] } }, { "index": 1895, "index_chain": 1895, "chain_name": "A", "nt_resnum": 2069, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2069", "linked_nts": [ "///A/2068", "///A/2070" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end", "alpha": -83.019, "beta": 174.423, "gamma": 70.913, "delta": 82.909, "epsilon": -157.454, "zeta": -61.973, "epsilon_zeta": -95.481, "bb_type": "BI", "chi": -166.733, "glyco_bond": "anti", "C5prime_xyz": [ -1.464, 8.683, 0.905 ], "P_xyz": [ 1.106, 9.174, 0.980 ], "form": "A", "ssZp": 4.425, "Dp": 4.495, "splay_angle": 23.542, "splay_distance": 3.716, "splay_ratio": 0.205, "d22": 4.358, "d64": 4.212, "eta": 167.169, "theta": -139.188, "eta_prime": -178.428, "theta_prime": -140.811, "eta_base": -136.482, "theta_base": -108.352, "v0": 0.290, "v1": -22.053, "v2": 34.098, "v3": -34.881, "v4": 21.834, "amplitude": 35.880, "phase_angle": 18.135, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.414, "filter_rmsd": 0.101, "frame": { "rmsd": 0.009, "origin": [ 164.947, 134.470, 184.976 ], "x_axis": [ -0.773, 0.277, -0.570 ], "y_axis": [ 0.076, -0.852, -0.518 ], "z_axis": [ -0.629, -0.444, 0.638 ], "quaternion": [ 0.056, -0.332, -0.266, 0.903 ] } }, { "index": 1896, "index_chain": 1896, "chain_name": "A", "nt_resnum": 2070, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2070", "linked_nts": [ "///A/2069", "///A/2071" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop", "alpha": -85.295, "beta": -177.146, "gamma": 64.660, "delta": 83.307, "epsilon": -160.153, "zeta": -73.409, "epsilon_zeta": -86.744, "bb_type": "BI", "chi": -159.057, "glyco_bond": "anti", "C5prime_xyz": [ -1.418, 8.721, 0.462 ], "P_xyz": [ 1.165, 9.177, 0.594 ], "form": "A", "ssZp": 4.348, "Dp": 4.502, "splay_angle": 22.507, "splay_distance": 3.491, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 164.427, "theta": -152.008, "eta_prime": -177.569, "theta_prime": -152.540, "eta_base": -126.906, "theta_base": -126.354, "v0": 1.418, "v1": -22.591, "v2": 33.900, "v3": -34.023, "v4": 20.564, "amplitude": 35.326, "phase_angle": 16.334, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.532, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 161.743, 134.264, 186.847 ], "x_axis": [ -0.523, -0.315, -0.792 ], "y_axis": [ 0.511, -0.860, 0.005 ], "z_axis": [ -0.683, -0.403, 0.610 ], "quaternion": [ -0.239, -0.426, -0.115, 0.865 ] } }, { "index": 1897, "index_chain": 1897, "chain_name": "A", "nt_resnum": 2071, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2071", "linked_nts": [ "///A/2070", "///A/2072" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -74.178, "beta": 169.621, "gamma": 65.227, "delta": 85.081, "epsilon": -132.388, "zeta": -117.361, "epsilon_zeta": -15.026, "bb_type": "--", "chi": -163.751, "glyco_bond": "anti", "C5prime_xyz": [ -1.358, 8.612, 0.755 ], "P_xyz": [ 1.251, 8.851, 0.667 ], "form": ".", "ssZp": 4.450, "Dp": 4.674, "splay_angle": 125.416, "splay_distance": 16.745, "splay_ratio": 0.889, "d22": null, "d64": null, "eta": 172.963, "theta": -131.224, "eta_prime": -175.308, "theta_prime": -152.682, "eta_base": -136.983, "theta_base": -175.624, "v0": 2.954, "v1": -23.668, "v2": 34.180, "v3": -33.406, "v4": 19.225, "amplitude": 35.209, "phase_angle": 13.888, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.681, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 158.758, 133.720, 188.573 ], "x_axis": [ -0.174, -0.716, -0.676 ], "y_axis": [ 0.679, -0.585, 0.444 ], "z_axis": [ -0.713, -0.382, 0.588 ], "quaternion": [ -0.455, -0.453, 0.020, 0.766 ] } }, { "index": 1898, "index_chain": 1898, "chain_name": "A", "nt_resnum": 2072, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2072", "linked_nts": [ "///A/2071", "///A/2073" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,A-minor,phosphate,splayed-apart", "alpha": 67.724, "beta": 139.890, "gamma": 108.906, "delta": 80.977, "epsilon": -143.976, "zeta": -74.399, "epsilon_zeta": -69.577, "bb_type": "BI", "chi": 176.815, "glyco_bond": "anti", "C5prime_xyz": [ -1.649, 8.528, 1.782 ], "P_xyz": [ 0.531, 9.712, 0.959 ], "form": "A", "ssZp": 4.436, "Dp": 4.514, "splay_angle": 26.758, "splay_distance": 4.158, "splay_ratio": 0.232, "d22": 4.897, "d64": 4.616, "eta": -38.190, "theta": -154.769, "eta_prime": -22.346, "theta_prime": -156.027, "eta_base": -22.425, "theta_base": -129.107, "v0": -2.881, "v1": -19.542, "v2": 33.201, "v3": -35.775, "v4": 24.377, "amplitude": 36.083, "phase_angle": 23.056, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.009, "origin": [ 157.013, 131.769, 205.112 ], "x_axis": [ 0.804, -0.431, 0.410 ], "y_axis": [ 0.325, -0.260, -0.909 ], "z_axis": [ 0.498, 0.864, -0.069 ], "quaternion": [ 0.607, -0.730, 0.036, -0.311 ] } }, { "index": 1899, "index_chain": 1899, "chain_name": "A", "nt_resnum": 2073, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2073", "linked_nts": [ "///A/2072", "///A/2074" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor", "alpha": -82.345, "beta": -170.491, "gamma": 54.338, "delta": 82.820, "epsilon": -152.171, "zeta": -65.132, "epsilon_zeta": -87.039, "bb_type": "BI", "chi": -169.485, "glyco_bond": "anti", "C5prime_xyz": [ -1.245, 8.626, 1.095 ], "P_xyz": [ 1.207, 8.843, 1.976 ], "form": "A", "ssZp": 4.524, "Dp": 4.573, "splay_angle": 23.336, "splay_distance": 3.758, "splay_ratio": 0.206, "d22": 4.564, "d64": 4.618, "eta": 162.547, "theta": -140.451, "eta_prime": 173.564, "theta_prime": -138.206, "eta_base": -146.463, "theta_base": -112.926, "v0": 2.473, "v1": -24.033, "v2": 35.264, "v3": -34.767, "v4": 20.388, "amplitude": 36.472, "phase_angle": 14.787, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.690, "filter_rmsd": 0.063, "frame": { "rmsd": 0.008, "origin": [ 158.495, 135.400, 206.492 ], "x_axis": [ 0.719, -0.663, -0.210 ], "y_axis": [ -0.308, -0.033, -0.951 ], "z_axis": [ 0.623, 0.748, -0.228 ], "quaternion": [ 0.604, -0.703, 0.345, -0.147 ] } }, { "index": 1900, "index_chain": 1900, "chain_name": "A", "nt_resnum": 2074, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2074", "linked_nts": [ "///A/2073", "///A/2075" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -68.842, "beta": -174.834, "gamma": 49.300, "delta": 79.860, "epsilon": -172.602, "zeta": -78.501, "epsilon_zeta": -94.102, "bb_type": "BI", "chi": -156.557, "glyco_bond": "anti", "C5prime_xyz": [ -1.300, 8.813, 0.299 ], "P_xyz": [ 1.219, 9.383, 0.699 ], "form": ".", "ssZp": 4.317, "Dp": 4.449, "splay_angle": 27.430, "splay_distance": 4.726, "splay_ratio": 0.247, "d22": null, "d64": null, "eta": 165.997, "theta": -138.272, "eta_prime": -178.473, "theta_prime": -144.791, "eta_base": -138.024, "theta_base": -133.332, "v0": 0.478, "v1": -23.342, "v2": 36.069, "v3": -36.739, "v4": 22.891, "amplitude": 37.899, "phase_angle": 17.879, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.903, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 161.654, 137.310, 207.200 ], "x_axis": [ 0.393, -0.601, -0.697 ], "y_axis": [ -0.613, 0.394, -0.685 ], "z_axis": [ 0.686, 0.696, -0.213 ], "quaternion": [ 0.627, -0.550, 0.551, 0.005 ] } }, { "index": 1901, "index_chain": 1901, "chain_name": "A", "nt_resnum": 2075, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2075", "linked_nts": [ "///A/2074", "///A/2076" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 149.264, "beta": -152.294, "gamma": -171.960, "delta": 82.246, "epsilon": -131.775, "zeta": -84.642, "epsilon_zeta": -47.132, "bb_type": "BI", "chi": 176.428, "glyco_bond": "anti", "C5prime_xyz": [ -1.307, 8.299, 1.888 ], "P_xyz": [ 0.277, 10.191, 1.029 ], "form": "A", "ssZp": 4.727, "Dp": 4.721, "splay_angle": 23.229, "splay_distance": 3.571, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 179.834, "theta": -171.306, "eta_prime": -169.718, "theta_prime": -164.522, "eta_base": -141.050, "theta_base": -131.404, "v0": 3.895, "v1": -25.398, "v2": 36.115, "v3": -34.837, "v4": 19.548, "amplitude": 37.024, "phase_angle": 12.721, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.764, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 166.080, 138.851, 207.808 ], "x_axis": [ 0.195, -0.388, -0.901 ], "y_axis": [ -0.755, 0.526, -0.390 ], "z_axis": [ 0.626, 0.757, -0.191 ], "quaternion": [ 0.619, -0.464, 0.617, 0.148 ] } }, { "index": 1902, "index_chain": 1902, "chain_name": "A", "nt_resnum": 2076, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2076", "linked_nts": [ "///A/2075", "///A/2077" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -54.824, "beta": 163.874, "gamma": 49.984, "delta": 81.404, "epsilon": -140.900, "zeta": -80.773, "epsilon_zeta": -60.127, "bb_type": "BI", "chi": -170.437, "glyco_bond": "anti", "C5prime_xyz": [ -1.233, 8.618, 1.157 ], "P_xyz": [ 1.334, 8.796, 1.566 ], "form": "A", "ssZp": 4.602, "Dp": 4.667, "splay_angle": 22.659, "splay_distance": 3.604, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 168.544, "theta": -144.470, "eta_prime": -177.736, "theta_prime": -142.829, "eta_base": -135.279, "theta_base": -122.816, "v0": 2.368, "v1": -24.559, "v2": 36.166, "v3": -35.801, "v4": 21.114, "amplitude": 37.456, "phase_angle": 15.079, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.715, "filter_rmsd": 0.063, "frame": { "rmsd": 0.008, "origin": [ 169.398, 140.071, 207.296 ], "x_axis": [ -0.309, -0.016, -0.951 ], "y_axis": [ -0.716, 0.662, 0.222 ], "z_axis": [ 0.626, 0.749, -0.216 ], "quaternion": [ 0.533, -0.247, 0.740, 0.328 ] } }, { "index": 1903, "index_chain": 1903, "chain_name": "A", "nt_resnum": 2077, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2077", "linked_nts": [ "///A/2076", "///A/2078" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -55.943, "beta": 171.192, "gamma": 45.717, "delta": 84.914, "epsilon": -164.269, "zeta": -73.339, "epsilon_zeta": -90.930, "bb_type": "BI", "chi": -168.909, "glyco_bond": "anti", "C5prime_xyz": [ -1.548, 8.710, 1.064 ], "P_xyz": [ 0.856, 9.082, 2.014 ], "form": "A", "ssZp": 4.239, "Dp": 4.313, "splay_angle": 21.794, "splay_distance": 3.795, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 167.049, "theta": -124.775, "eta_prime": -179.203, "theta_prime": -134.473, "eta_base": -144.735, "theta_base": -113.535, "v0": -1.752, "v1": -18.863, "v2": 31.020, "v3": -32.954, "v4": 21.925, "amplitude": 33.359, "phase_angle": 21.584, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.795, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 172.447, 141.316, 205.833 ], "x_axis": [ -0.813, 0.052, -0.580 ], "y_axis": [ -0.457, 0.559, 0.691 ], "z_axis": [ 0.361, 0.827, -0.431 ], "quaternion": [ 0.281, -0.121, 0.837, 0.453 ] } }, { "index": 1904, "index_chain": 1904, "chain_name": "A", "nt_resnum": 2078, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2078", "linked_nts": [ "///A/2077", "///A/2079" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 162.691, "beta": -162.473, "gamma": 166.229, "delta": 83.761, "epsilon": -137.217, "zeta": -78.942, "epsilon_zeta": -58.275, "bb_type": "BI", "chi": 176.654, "glyco_bond": "anti", "C5prime_xyz": [ -1.760, 8.440, 1.799 ], "P_xyz": [ 0.212, 10.059, 1.265 ], "form": "A", "ssZp": 4.308, "Dp": 4.432, "splay_angle": 25.940, "splay_distance": 4.159, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 162.482, "theta": -161.034, "eta_prime": 178.961, "theta_prime": -156.551, "eta_base": -140.357, "theta_base": -125.615, "v0": -3.573, "v1": -17.610, "v2": 30.810, "v3": -33.792, "v4": 23.583, "amplitude": 33.876, "phase_angle": 24.562, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.661, "filter_rmsd": 0.046, "frame": { "rmsd": 0.015, "origin": [ 173.870, 142.721, 202.608 ], "x_axis": [ -0.971, 0.226, -0.080 ], "y_axis": [ 0.031, 0.446, 0.894 ], "z_axis": [ 0.238, 0.866, -0.440 ], "quaternion": [ 0.094, 0.076, 0.845, 0.521 ] } }, { "index": 1905, "index_chain": 1905, "chain_name": "A", "nt_resnum": 2079, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2079", "linked_nts": [ "///A/2078", "///A/2080" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -55.421, "beta": 172.908, "gamma": 45.762, "delta": 85.128, "epsilon": -133.376, "zeta": -88.677, "epsilon_zeta": -44.699, "bb_type": "BI", "chi": -165.351, "glyco_bond": "anti", "C5prime_xyz": [ -1.491, 8.805, 0.813 ], "P_xyz": [ 0.903, 9.255, 1.767 ], "form": ".", "ssZp": 4.206, "Dp": 4.421, "splay_angle": 32.088, "splay_distance": 5.032, "splay_ratio": 0.281, "d22": null, "d64": null, "eta": 173.285, "theta": -139.538, "eta_prime": -173.257, "theta_prime": -125.412, "eta_base": -134.269, "theta_base": -74.351, "v0": -3.795, "v1": -17.016, "v2": 30.037, "v3": -33.102, "v4": 23.275, "amplitude": 33.149, "phase_angle": 25.025, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.780, "filter_rmsd": 0.064, "frame": { "rmsd": 0.008, "origin": [ 174.394, 145.267, 199.360 ], "x_axis": [ -0.778, 0.392, 0.491 ], "y_axis": [ 0.571, 0.114, 0.813 ], "z_axis": [ 0.263, 0.913, -0.312 ], "quaternion": [ -0.077, 0.324, 0.742, 0.581 ] } }, { "index": 1906, "index_chain": 1906, "chain_name": "A", "nt_resnum": 2080, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2080", "linked_nts": [ "///A/2079", "///A/2081" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,bulge", "alpha": -40.950, "beta": 147.526, "gamma": 64.903, "delta": 149.495, "epsilon": -98.139, "zeta": 177.702, "epsilon_zeta": 84.159, "bb_type": "BII", "chi": -139.800, "glyco_bond": "anti", "C5prime_xyz": [ -1.504, 8.621, -0.079 ], "P_xyz": [ 1.056, 8.368, 0.436 ], "form": ".", "ssZp": 0.911, "Dp": 0.942, "splay_angle": 40.305, "splay_distance": 6.712, "splay_ratio": 0.348, "d22": null, "d64": null, "eta": -164.427, "theta": 171.712, "eta_prime": -123.489, "theta_prime": 146.444, "eta_base": -72.642, "theta_base": 142.956, "v0": -17.846, "v1": 33.461, "v2": -35.440, "v3": 26.021, "v4": -5.332, "amplitude": 36.028, "phase_angle": 169.633, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.399, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 174.641, 150.168, 200.477 ], "x_axis": [ -0.082, 0.138, 0.987 ], "y_axis": [ 0.958, -0.262, 0.116 ], "z_axis": [ 0.275, 0.955, -0.110 ], "quaternion": [ -0.369, 0.568, 0.482, 0.555 ] } }, { "index": 1907, "index_chain": 1907, "chain_name": "A", "nt_resnum": 2081, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2081", "linked_nts": [ "///A/2080", "///A/2082" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -122.663, "beta": 159.019, "gamma": 28.212, "delta": 82.564, "epsilon": -164.756, "zeta": -89.611, "epsilon_zeta": -75.146, "bb_type": "BI", "chi": -168.106, "glyco_bond": "anti", "C5prime_xyz": [ -1.392, 8.677, 1.036 ], "P_xyz": [ 1.018, 8.889, 2.044 ], "form": "A", "ssZp": 4.393, "Dp": 4.442, "splay_angle": 22.280, "splay_distance": 3.579, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 134.302, "theta": -137.838, "eta_prime": 124.089, "theta_prime": -141.918, "eta_base": 134.019, "theta_base": -122.647, "v0": 1.329, "v1": -22.554, "v2": 34.012, "v3": -34.234, "v4": 20.750, "amplitude": 35.481, "phase_angle": 16.547, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4g", "suiteness": 0.098, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 174.235, 146.322, 194.990 ], "x_axis": [ -0.010, 0.349, 0.937 ], "y_axis": [ 0.998, -0.058, 0.032 ], "z_axis": [ 0.065, 0.935, -0.348 ], "quaternion": [ -0.382, 0.591, 0.570, 0.424 ] } }, { "index": 1908, "index_chain": 1908, "chain_name": "A", "nt_resnum": 2082, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2082", "linked_nts": [ "///A/2081", "///A/2083" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 173.734, "beta": -146.697, "gamma": 150.821, "delta": 83.265, "epsilon": -132.804, "zeta": -123.531, "epsilon_zeta": -9.273, "bb_type": "--", "chi": -179.957, "glyco_bond": "anti", "C5prime_xyz": [ -1.534, 8.426, 1.677 ], "P_xyz": [ 0.748, 9.375, 0.831 ], "form": ".", "ssZp": 4.615, "Dp": 4.640, "splay_angle": 29.900, "splay_distance": 4.588, "splay_ratio": 0.258, "d22": null, "d64": null, "eta": 160.492, "theta": -153.041, "eta_prime": 175.590, "theta_prime": -149.938, "eta_base": -148.871, "theta_base": -126.922, "v0": 1.382, "v1": -22.580, "v2": 33.995, "v3": -34.182, "v4": 20.705, "amplitude": 35.449, "phase_angle": 16.467, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.038, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 172.529, 149.315, 194.018 ], "x_axis": [ 0.476, 0.220, 0.851 ], "y_axis": [ 0.878, -0.162, -0.450 ], "z_axis": [ 0.039, 0.962, -0.271 ], "quaternion": [ 0.511, -0.691, -0.398, -0.322 ] } }, { "index": 1909, "index_chain": 1909, "chain_name": "A", "nt_resnum": 2083, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2083", "linked_nts": [ "///A/2082", "///A/2084" ], "nt_type": "RNA", "dbn": "(", "summary": "turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,splayed-apart", "alpha": 29.915, "beta": 127.265, "gamma": 1.538, "delta": 81.263, "epsilon": -166.653, "zeta": 98.116, "epsilon_zeta": 95.231, "bb_type": "--", "chi": -142.542, "glyco_bond": "anti", "C5prime_xyz": [ -1.345, 8.716, -0.549 ], "P_xyz": [ 1.188, 8.943, 0.081 ], "form": ".", "ssZp": 3.921, "Dp": 4.520, "splay_angle": 153.505, "splay_distance": 18.473, "splay_ratio": 0.973, "d22": null, "d64": null, "eta": 176.451, "theta": 10.409, "eta_prime": -174.313, "theta_prime": 1.855, "eta_base": -144.264, "theta_base": -16.547, "v0": 1.923, "v1": -23.874, "v2": 35.428, "v3": -35.303, "v4": 21.089, "amplitude": 36.796, "phase_angle": 15.674, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.006, "origin": [ 171.553, 153.797, 193.980 ], "x_axis": [ 0.896, 0.065, 0.439 ], "y_axis": [ 0.441, -0.230, -0.867 ], "z_axis": [ 0.044, 0.971, -0.235 ], "quaternion": [ 0.598, -0.768, -0.165, -0.157 ] } }, { "index": 1910, "index_chain": 1910, "chain_name": "A", "nt_resnum": 2084, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2084", "linked_nts": [ "///A/2083", "///A/2085" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart", "alpha": -60.109, "beta": -173.438, "gamma": 59.651, "delta": 76.156, "epsilon": -113.515, "zeta": 125.786, "epsilon_zeta": 120.699, "bb_type": "--", "chi": -112.895, "glyco_bond": "anti", "C5prime_xyz": [ -2.411, 8.306, -2.120 ], "P_xyz": [ -0.369, 9.057, -3.572 ], "form": ".", "ssZp": 1.218, "Dp": 4.603, "splay_angle": 147.758, "splay_distance": 18.996, "splay_ratio": 0.961, "d22": null, "d64": null, "eta": -133.941, "theta": 55.774, "eta_prime": -99.660, "theta_prime": 62.801, "eta_base": -65.231, "theta_base": 110.726, "v0": -5.285, "v1": -19.198, "v2": 34.896, "v3": -39.038, "v4": 27.964, "amplitude": 38.927, "phase_angle": 26.303, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "9a", "suiteness": 0.346, "filter_rmsd": 0.061, "frame": { "rmsd": 0.006, "origin": [ 178.613, 155.384, 176.983 ], "x_axis": [ -0.607, 0.641, -0.470 ], "y_axis": [ -0.340, 0.325, 0.882 ], "z_axis": [ 0.718, 0.696, 0.021 ], "quaternion": [ 0.430, 0.109, 0.691, 0.571 ] } }, { "index": 1911, "index_chain": 1911, "chain_name": "A", "nt_resnum": 2085, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2085", "linked_nts": [ "///A/2084", "///A/2086" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": -74.646, "beta": -149.323, "gamma": 12.562, "delta": 82.209, "epsilon": -104.156, "zeta": -129.602, "epsilon_zeta": 25.446, "bb_type": "--", "chi": 164.661, "glyco_bond": "anti", "C5prime_xyz": [ -1.752, 8.044, 2.415 ], "P_xyz": [ -1.082, 8.031, 4.946 ], "form": "A", "ssZp": 4.543, "Dp": 4.639, "splay_angle": 22.928, "splay_distance": 3.496, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": -157.028, "theta": -156.623, "eta_prime": -155.853, "theta_prime": -138.952, "eta_base": -178.935, "theta_base": -97.410, "v0": 1.531, "v1": -23.167, "v2": 34.761, "v3": -34.909, "v4": 21.055, "amplitude": 36.215, "phase_angle": 16.291, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 179.531, 158.068, 195.766 ], "x_axis": [ 0.857, -0.493, -0.146 ], "y_axis": [ -0.401, -0.463, -0.791 ], "z_axis": [ 0.323, 0.736, -0.594 ], "quaternion": [ -0.447, 0.854, -0.262, 0.052 ] } }, { "index": 1912, "index_chain": 1912, "chain_name": "A", "nt_resnum": 2086, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2086", "linked_nts": [ "///A/2085", "///A/2087" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack", "alpha": -11.285, "beta": 120.320, "gamma": 25.541, "delta": 77.699, "epsilon": -157.909, "zeta": -87.159, "epsilon_zeta": -70.750, "bb_type": "BI", "chi": -170.196, "glyco_bond": "anti", "C5prime_xyz": [ -1.893, 8.697, 1.064 ], "P_xyz": [ 0.667, 8.615, 1.571 ], "form": ".", "ssZp": 4.558, "Dp": 4.565, "splay_angle": 31.836, "splay_distance": 4.706, "splay_ratio": 0.274, "d22": null, "d64": null, "eta": 157.258, "theta": -153.951, "eta_prime": 172.790, "theta_prime": -155.128, "eta_base": -145.366, "theta_base": -134.237, "v0": -0.827, "v1": -23.113, "v2": 36.909, "v3": -38.428, "v4": 24.692, "amplitude": 39.221, "phase_angle": 19.772, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 181.012, 161.140, 194.995 ], "x_axis": [ 0.497, -0.678, -0.541 ], "y_axis": [ -0.810, -0.139, -0.570 ], "z_axis": [ 0.311, 0.722, -0.618 ], "quaternion": [ -0.430, 0.751, -0.495, -0.077 ] } }, { "index": 1913, "index_chain": 1913, "chain_name": "A", "nt_resnum": 2087, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2087", "linked_nts": [ "///A/2086", "///A/2088" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": -50.946, "beta": 164.523, "gamma": 57.482, "delta": 84.925, "epsilon": -101.442, "zeta": -124.170, "epsilon_zeta": 22.728, "bb_type": "--", "chi": 174.028, "glyco_bond": "anti", "C5prime_xyz": [ -1.534, 8.179, 2.002 ], "P_xyz": [ 0.991, 8.162, 2.713 ], "form": ".", "ssZp": 4.630, "Dp": 4.666, "splay_angle": 20.930, "splay_distance": 3.354, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": -165.786, "theta": -90.478, "eta_prime": -162.627, "theta_prime": -96.084, "eta_base": -136.154, "theta_base": -68.843, "v0": 3.279, "v1": -23.649, "v2": 33.858, "v3": -32.933, "v4": 18.713, "amplitude": 34.797, "phase_angle": 13.344, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.664, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 183.626, 164.786, 193.571 ], "x_axis": [ 0.038, -0.746, -0.665 ], "y_axis": [ -0.998, 0.000, -0.057 ], "z_axis": [ 0.043, 0.666, -0.744 ], "quaternion": [ -0.271, 0.667, -0.653, -0.233 ] } }, { "index": 1914, "index_chain": 1914, "chain_name": "A", "nt_resnum": 2088, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2088", "linked_nts": [ "///A/2087", "///A/2089" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -164.678, "beta": -114.563, "gamma": 117.047, "delta": 83.914, "epsilon": -105.400, "zeta": -89.118, "epsilon_zeta": -16.282, "bb_type": "--", "chi": -94.001, "glyco_bond": "anti", "C5prime_xyz": [ -2.472, 7.464, -2.847 ], "P_xyz": [ -0.541, 6.130, -4.016 ], "form": ".", "ssZp": -0.344, "Dp": 4.602, "splay_angle": 117.487, "splay_distance": 17.641, "splay_ratio": 0.855, "d22": null, "d64": null, "eta": 144.970, "theta": -64.172, "eta_prime": 169.818, "theta_prime": -99.366, "eta_base": -151.292, "theta_base": -92.438, "v0": -0.210, "v1": -20.830, "v2": 32.669, "v3": -33.738, "v4": 21.452, "amplitude": 34.546, "phase_angle": 18.975, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 182.495, 166.032, 190.670 ], "x_axis": [ -0.602, -0.700, -0.383 ], "y_axis": [ -0.612, 0.713, -0.341 ], "z_axis": [ 0.513, 0.029, -0.858 ], "quaternion": [ 0.251, -0.368, 0.891, -0.088 ] } }, { "index": 1915, "index_chain": 1915, "chain_name": "A", "nt_resnum": 2089, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2089", "linked_nts": [ "///A/2088", "///A/2090" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": 169.768, "beta": -135.037, "gamma": -59.248, "delta": 143.940, "epsilon": -141.763, "zeta": 101.837, "epsilon_zeta": 116.399, "bb_type": "--", "chi": -63.124, "glyco_bond": "--", "C5prime_xyz": [ -3.250, 6.515, -3.124 ], "P_xyz": [ -4.338, 7.781, -5.145 ], "form": ".", "ssZp": 0.691, "Dp": 1.839, "splay_angle": 140.317, "splay_distance": 18.855, "splay_ratio": 0.941, "d22": null, "d64": null, "eta": -45.199, "theta": 36.332, "eta_prime": -18.936, "theta_prime": 98.159, "eta_base": -40.069, "theta_base": 167.596, "v0": -20.274, "v1": 33.430, "v2": -33.120, "v3": 22.314, "v4": -1.476, "amplitude": 34.517, "phase_angle": 163.644, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.036, "frame": { "rmsd": 0.005, "origin": [ 169.022, 173.175, 181.801 ], "x_axis": [ -0.152, 0.748, -0.647 ], "y_axis": [ 0.987, 0.154, -0.053 ], "z_axis": [ 0.059, -0.646, -0.761 ], "quaternion": [ 0.246, 0.603, 0.719, -0.243 ] } }, { "index": 1916, "index_chain": 1916, "chain_name": "A", "nt_resnum": 2090, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2090", "linked_nts": [ "///A/2089", "///A/2091" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BI,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 127.554, "beta": 117.588, "gamma": -55.725, "delta": 152.952, "epsilon": -164.816, "zeta": -102.550, "epsilon_zeta": -62.266, "bb_type": "BI", "chi": 172.962, "glyco_bond": "--", "C5prime_xyz": [ -2.360, 7.910, 2.277 ], "P_xyz": [ -3.559, 7.820, 4.607 ], "form": ".", "ssZp": 0.083, "Dp": 1.930, "splay_angle": 58.215, "splay_distance": 7.849, "splay_ratio": 0.504, "d22": null, "d64": null, "eta": -104.030, "theta": -143.565, "eta_prime": -151.736, "theta_prime": -159.248, "eta_base": 163.216, "theta_base": 91.552, "v0": -18.636, "v1": 35.726, "v2": -38.177, "v3": 28.409, "v4": -6.363, "amplitude": 38.704, "phase_angle": 170.534, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 185.351, 163.753, 181.500 ], "x_axis": [ -0.365, -0.926, 0.096 ], "y_axis": [ -0.590, 0.310, 0.746 ], "z_axis": [ -0.720, 0.216, -0.659 ], "quaternion": [ -0.267, -0.496, 0.764, 0.315 ] } }, { "index": 1917, "index_chain": 1917, "chain_name": "A", "nt_resnum": 2091, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2091", "linked_nts": [ "///A/2090", "///A/2092" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": -109.086, "beta": 179.472, "gamma": 27.629, "delta": 146.615, "epsilon": -158.262, "zeta": -12.642, "epsilon_zeta": -145.620, "bb_type": "--", "chi": 24.222, "glyco_bond": "syn", "C5prime_xyz": [ -5.395, 3.782, -0.778 ], "P_xyz": [ -5.452, 2.294, -2.942 ], "form": ".", "ssZp": -1.506, "Dp": 1.972, "splay_angle": 88.081, "splay_distance": 14.272, "splay_ratio": 0.695, "d22": null, "d64": null, "eta": 106.716, "theta": -59.450, "eta_prime": 128.995, "theta_prime": -100.267, "eta_base": 43.428, "theta_base": -81.261, "v0": -20.210, "v1": 34.597, "v2": -35.000, "v3": 24.251, "v4": -2.784, "amplitude": 36.145, "phase_angle": 165.543, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.005, "origin": [ 184.022, 166.137, 188.859 ], "x_axis": [ -0.126, -0.991, -0.033 ], "y_axis": [ 0.669, -0.061, -0.741 ], "z_axis": [ 0.733, -0.115, 0.671 ], "quaternion": [ 0.609, -0.257, 0.314, -0.682 ] } }, { "index": 1918, "index_chain": 1918, "chain_name": "A", "nt_resnum": 2092, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2092", "linked_nts": [ "///A/2091", "///A/2093" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -160.797, "beta": 84.350, "gamma": -125.827, "delta": 75.480, "epsilon": -105.553, "zeta": -52.552, "epsilon_zeta": -53.001, "bb_type": "--", "chi": -52.478, "glyco_bond": "--", "C5prime_xyz": [ -4.288, 5.931, -3.073 ], "P_xyz": [ -6.107, 7.762, -3.609 ], "form": ".", "ssZp": -3.308, "Dp": 4.546, "splay_angle": 22.245, "splay_distance": 4.155, "splay_ratio": 0.198, "d22": 3.532, "d64": 5.196, "eta": -161.726, "theta": -140.714, "eta_prime": -140.743, "theta_prime": -135.070, "eta_base": -141.340, "theta_base": -122.919, "v0": -7.217, "v1": -17.871, "v2": 34.620, "v3": -39.839, "v4": 29.694, "amplitude": 39.554, "phase_angle": 28.925, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.010, "origin": [ 181.976, 167.242, 174.778 ], "x_axis": [ 0.143, -0.167, -0.975 ], "y_axis": [ 0.971, -0.167, 0.171 ], "z_axis": [ -0.191, -0.972, 0.138 ], "quaternion": [ 0.528, 0.541, 0.371, -0.539 ] } }, { "index": 1919, "index_chain": 1919, "chain_name": "A", "nt_resnum": 2093, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2093", "linked_nts": [ "///A/2092", "///A/2094" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": 106.914, "beta": -161.976, "gamma": -158.945, "delta": 81.780, "epsilon": -140.601, "zeta": -62.290, "epsilon_zeta": -78.311, "bb_type": "BI", "chi": -171.144, "glyco_bond": "anti", "C5prime_xyz": [ -1.697, 8.762, 1.118 ], "P_xyz": [ -0.754, 10.945, 0.036 ], "form": ".", "ssZp": 4.407, "Dp": 4.488, "splay_angle": 26.535, "splay_distance": 4.274, "splay_ratio": 0.230, "d22": 3.515, "d64": 3.555, "eta": 128.843, "theta": -165.541, "eta_prime": 160.199, "theta_prime": -154.705, "eta_base": -178.212, "theta_base": -94.547, "v0": -4.278, "v1": -18.066, "v2": 32.222, "v3": -35.600, "v4": 25.125, "amplitude": 35.649, "phase_angle": 25.328, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.005, "origin": [ 182.468, 169.772, 171.518 ], "x_axis": [ -0.634, 0.255, 0.730 ], "y_axis": [ 0.750, -0.026, 0.661 ], "z_axis": [ 0.188, 0.967, -0.174 ], "quaternion": [ -0.203, 0.376, 0.668, 0.610 ] } }, { "index": 1920, "index_chain": 1920, "chain_name": "A", "nt_resnum": 2094, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2094", "linked_nts": [ "///A/2093", "///A/2095" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -63.612, "beta": 165.511, "gamma": 50.931, "delta": 79.259, "epsilon": -153.041, "zeta": -67.646, "epsilon_zeta": -85.395, "bb_type": "BI", "chi": -163.078, "glyco_bond": "anti", "C5prime_xyz": [ -1.556, 8.826, 0.680 ], "P_xyz": [ 0.994, 9.378, 0.907 ], "form": "A", "ssZp": 4.458, "Dp": 4.569, "splay_angle": 21.115, "splay_distance": 3.515, "splay_ratio": 0.188, "d22": 4.313, "d64": 4.246, "eta": 156.705, "theta": -144.525, "eta_prime": -177.982, "theta_prime": -144.907, "eta_base": -101.443, "theta_base": -125.613, "v0": -1.333, "v1": -21.777, "v2": 35.315, "v3": -37.017, "v4": 24.206, "amplitude": 37.719, "phase_angle": 20.566, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.902, "filter_rmsd": 0.059, "frame": { "rmsd": 0.006, "origin": [ 181.492, 173.441, 173.479 ], "x_axis": [ 0.199, 0.089, 0.976 ], "y_axis": [ 0.969, -0.163, -0.183 ], "z_axis": [ 0.143, 0.983, -0.119 ], "quaternion": [ -0.479, 0.609, 0.435, 0.460 ] } }, { "index": 1921, "index_chain": 1921, "chain_name": "A", "nt_resnum": 2095, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2095", "linked_nts": [ "///A/2094", "///A/2096" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop", "alpha": -63.159, "beta": -170.535, "gamma": 35.938, "delta": 79.949, "epsilon": -98.819, "zeta": -35.664, "epsilon_zeta": -63.156, "bb_type": "--", "chi": -151.298, "glyco_bond": "anti", "C5prime_xyz": [ -1.392, 8.838, -0.000 ], "P_xyz": [ 0.983, 9.666, 0.738 ], "form": ".", "ssZp": 3.567, "Dp": 4.660, "splay_angle": 21.019, "splay_distance": 3.869, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 177.047, "theta": -111.037, "eta_prime": -177.674, "theta_prime": -119.803, "eta_base": -152.528, "theta_base": -137.098, "v0": -0.288, "v1": -22.217, "v2": 35.076, "v3": -36.219, "v4": 23.002, "amplitude": 37.110, "phase_angle": 19.057, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.470, "filter_rmsd": 0.059, "frame": { "rmsd": 0.005, "origin": [ 180.362, 176.693, 174.189 ], "x_axis": [ 0.613, -0.311, 0.727 ], "y_axis": [ 0.747, -0.072, -0.661 ], "z_axis": [ 0.258, 0.948, 0.188 ], "quaternion": [ 0.657, -0.612, -0.178, -0.402 ] } }, { "index": 1922, "index_chain": 1922, "chain_name": "A", "nt_resnum": 2096, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2096", "linked_nts": [ "///A/2095", "///A/2097" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,cap-donor,splayed-apart", "alpha": -90.297, "beta": 51.659, "gamma": -148.127, "delta": 144.410, "epsilon": -71.066, "zeta": -149.341, "epsilon_zeta": 78.275, "bb_type": "--", "chi": -126.958, "glyco_bond": "anti", "C5prime_xyz": [ -2.008, 8.704, -0.874 ], "P_xyz": [ -3.528, 9.792, -2.735 ], "form": ".", "ssZp": 0.266, "Dp": 0.277, "splay_angle": 155.361, "splay_distance": 20.603, "splay_ratio": 0.977, "d22": null, "d64": null, "eta": -116.079, "theta": -8.368, "eta_prime": -120.639, "theta_prime": 65.045, "eta_base": -142.599, "theta_base": 141.250, "v0": -23.764, "v1": 36.949, "v2": -35.272, "v3": 22.498, "v4": 0.599, "amplitude": 37.459, "phase_angle": 160.326, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 179.909, 180.138, 175.890 ], "x_axis": [ 0.456, -0.425, 0.782 ], "y_axis": [ 0.881, 0.094, -0.463 ], "z_axis": [ 0.123, 0.900, 0.417 ], "quaternion": [ 0.701, -0.486, -0.235, -0.465 ] } }, { "index": 1923, "index_chain": 1923, "chain_name": "A", "nt_resnum": 2097, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2097", "linked_nts": [ "///A/2096", "///A/2098" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -158.086, "beta": -50.640, "gamma": -78.320, "delta": 78.872, "epsilon": -154.317, "zeta": 93.720, "epsilon_zeta": 111.963, "bb_type": "--", "chi": -158.511, "glyco_bond": "anti", "C5prime_xyz": [ -1.503, 8.779, 0.417 ], "P_xyz": [ -3.447, 10.478, 0.881 ], "form": ".", "ssZp": 4.394, "Dp": 4.602, "splay_angle": 166.371, "splay_distance": 17.327, "splay_ratio": 0.993, "d22": null, "d64": null, "eta": -103.485, "theta": -72.618, "eta_prime": -178.948, "theta_prime": -44.511, "eta_base": 112.733, "theta_base": -29.096, "v0": 1.148, "v1": -24.207, "v2": 36.809, "v3": -37.174, "v4": 22.673, "amplitude": 38.477, "phase_angle": 16.934, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 184.597, 188.959, 157.870 ], "x_axis": [ -0.812, 0.580, -0.067 ], "y_axis": [ -0.338, -0.373, 0.864 ], "z_axis": [ 0.476, 0.724, 0.499 ], "quaternion": [ 0.280, 0.125, 0.484, 0.819 ] } }, { "index": 1924, "index_chain": 1924, "chain_name": "A", "nt_resnum": 2098, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2098", "linked_nts": [ "///A/2097", "///A/2099" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,A-minor,cap-acceptor,splayed-apart", "alpha": -79.210, "beta": 177.388, "gamma": 50.459, "delta": 83.812, "epsilon": -135.288, "zeta": -74.496, "epsilon_zeta": -60.793, "bb_type": "BI", "chi": -177.892, "glyco_bond": "anti", "C5prime_xyz": [ -1.021, 8.309, 1.592 ], "P_xyz": [ 1.505, 8.128, 2.305 ], "form": "A", "ssZp": 4.751, "Dp": 4.762, "splay_angle": 22.259, "splay_distance": 3.490, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": -169.666, "theta": -133.888, "eta_prime": -134.222, "theta_prime": -130.897, "eta_base": -103.429, "theta_base": -104.871, "v0": 8.146, "v1": -28.644, "v2": 37.177, "v3": -33.470, "v4": 16.012, "amplitude": 37.405, "phase_angle": 6.329, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "9a", "suiteness": 0.431, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 186.544, 185.805, 174.796 ], "x_axis": [ 0.730, -0.598, -0.332 ], "y_axis": [ -0.314, 0.139, -0.939 ], "z_axis": [ 0.608, 0.790, -0.086 ], "quaternion": [ 0.667, -0.648, 0.352, -0.106 ] } }, { "index": 1925, "index_chain": 1925, "chain_name": "A", "nt_resnum": 2099, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2099", "linked_nts": [ "///A/2098", "///A/2100" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -71.540, "beta": 176.216, "gamma": 56.879, "delta": 83.802, "epsilon": -156.228, "zeta": -70.313, "epsilon_zeta": -85.914, "bb_type": "BI", "chi": -168.926, "glyco_bond": "anti", "C5prime_xyz": [ -1.425, 8.671, 1.086 ], "P_xyz": [ 1.098, 8.985, 1.709 ], "form": "A", "ssZp": 4.423, "Dp": 4.481, "splay_angle": 25.894, "splay_distance": 3.999, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 163.437, "theta": -145.420, "eta_prime": 179.923, "theta_prime": -145.431, "eta_base": -136.685, "theta_base": -115.731, "v0": 1.115, "v1": -22.332, "v2": 33.802, "v3": -34.105, "v4": 20.826, "amplitude": 35.316, "phase_angle": 16.838, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.865, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 189.643, 187.133, 175.698 ], "x_axis": [ 0.203, -0.577, -0.791 ], "y_axis": [ -0.655, 0.521, -0.547 ], "z_axis": [ 0.728, 0.629, -0.272 ], "quaternion": [ 0.602, -0.488, 0.631, 0.033 ] } }, { "index": 1926, "index_chain": 1926, "chain_name": "A", "nt_resnum": 2100, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2100", "linked_nts": [ "///A/2099", "///A/2101" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -65.475, "beta": 172.439, "gamma": 54.620, "delta": 82.170, "epsilon": -134.026, "zeta": -87.292, "epsilon_zeta": -46.734, "bb_type": "BI", "chi": -177.145, "glyco_bond": "anti", "C5prime_xyz": [ -1.484, 8.437, 1.530 ], "P_xyz": [ 1.020, 8.653, 2.257 ], "form": "A", "ssZp": 4.636, "Dp": 4.671, "splay_angle": 22.967, "splay_distance": 3.687, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 172.262, "theta": -142.826, "eta_prime": -174.969, "theta_prime": -139.853, "eta_base": -130.213, "theta_base": -117.422, "v0": 2.180, "v1": -23.801, "v2": 35.176, "v3": -34.892, "v4": 20.646, "amplitude": 36.463, "phase_angle": 15.271, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.944, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 193.306, 188.587, 175.014 ], "x_axis": [ -0.243, -0.221, -0.944 ], "y_axis": [ -0.770, 0.636, 0.050 ], "z_axis": [ 0.590, 0.739, -0.325 ], "quaternion": [ 0.517, -0.334, 0.742, 0.266 ] } }, { "index": 1927, "index_chain": 1927, "chain_name": "A", "nt_resnum": 2101, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2101", "linked_nts": [ "///A/2100", "///A/2102" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -44.818, "beta": 153.706, "gamma": 50.197, "delta": 79.358, "epsilon": -131.230, "zeta": -85.751, "epsilon_zeta": -45.479, "bb_type": "BI", "chi": -172.602, "glyco_bond": "anti", "C5prime_xyz": [ -1.963, 8.709, 1.198 ], "P_xyz": [ 0.529, 9.283, 1.690 ], "form": "A", "ssZp": 4.481, "Dp": 4.585, "splay_angle": 20.319, "splay_distance": 3.252, "splay_ratio": 0.177, "d22": null, "d64": null, "eta": 172.676, "theta": -142.989, "eta_prime": -173.163, "theta_prime": -142.254, "eta_base": -136.948, "theta_base": -103.603, "v0": -2.928, "v1": -20.250, "v2": 34.339, "v3": -36.998, "v4": 25.166, "amplitude": 37.302, "phase_angle": 22.992, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.492, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 196.481, 189.524, 173.391 ], "x_axis": [ -0.624, 0.079, -0.778 ], "y_axis": [ -0.557, 0.653, 0.513 ], "z_axis": [ 0.548, 0.753, -0.363 ], "quaternion": [ 0.408, -0.147, 0.812, 0.390 ] } }, { "index": 1928, "index_chain": 1928, "chain_name": "A", "nt_resnum": 2102, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2102", "linked_nts": [ "///A/2101", "///A/2103" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,ribose-zipper", "alpha": -59.180, "beta": 148.388, "gamma": 60.080, "delta": 80.907, "epsilon": -113.629, "zeta": -120.845, "epsilon_zeta": 7.216, "bb_type": "--", "chi": -169.783, "glyco_bond": "anti", "C5prime_xyz": [ -1.848, 8.727, 1.056 ], "P_xyz": [ 0.705, 9.259, 0.910 ], "form": ".", "ssZp": 4.439, "Dp": 4.633, "splay_angle": 4.521, "splay_distance": 1.441, "splay_ratio": 0.084, "d22": 4.980, "d64": 3.288, "eta": 168.849, "theta": -159.184, "eta_prime": -177.152, "theta_prime": -155.951, "eta_base": -124.590, "theta_base": -88.983, "v0": -1.847, "v1": -20.992, "v2": 34.439, "v3": -36.477, "v4": 24.144, "amplitude": 36.981, "phase_angle": 21.371, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.564, "filter_rmsd": 0.057, "frame": { "rmsd": 0.013, "origin": [ 197.717, 191.257, 170.932 ], "x_axis": [ -0.850, 0.440, -0.290 ], "y_axis": [ -0.018, 0.526, 0.850 ], "z_axis": [ 0.527, 0.727, -0.439 ], "quaternion": [ 0.244, 0.126, 0.839, 0.470 ] } }, { "index": 1929, "index_chain": 1929, "chain_name": "A", "nt_resnum": 2103, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2103", "linked_nts": [ "///A/2102", "///A/2104" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,A-minor,ribose-zipper", "alpha": -47.801, "beta": 123.099, "gamma": 54.853, "delta": 83.075, "epsilon": -117.694, "zeta": -130.450, "epsilon_zeta": 12.756, "bb_type": "--", "chi": -123.775, "glyco_bond": "anti", "C5prime_xyz": [ -1.592, 8.379, -1.585 ], "P_xyz": [ 0.586, 7.485, -2.716 ], "form": ".", "ssZp": 2.196, "Dp": 4.713, "splay_angle": 17.254, "splay_distance": 3.310, "splay_ratio": 0.184, "d22": 4.398, "d64": 3.162, "eta": 165.648, "theta": -158.428, "eta_prime": 176.710, "theta_prime": -162.007, "eta_base": -108.279, "theta_base": -154.487, "v0": 3.615, "v1": -24.950, "v2": 35.676, "v3": -34.391, "v4": 19.492, "amplitude": 36.612, "phase_angle": 12.985, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.402, "filter_rmsd": 0.105, "frame": { "rmsd": 0.006, "origin": [ 198.279, 192.533, 171.294 ], "x_axis": [ -0.618, 0.786, -0.027 ], "y_axis": [ 0.739, 0.593, 0.321 ], "z_axis": [ 0.268, 0.178, -0.947 ], "quaternion": [ 0.083, 0.429, 0.888, 0.140 ] } }, { "index": 1930, "index_chain": 1930, "chain_name": "A", "nt_resnum": 2104, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2104", "linked_nts": [ "///A/2103", "///A/2105" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -39.213, "beta": 110.204, "gamma": 57.998, "delta": 81.233, "epsilon": -163.024, "zeta": 46.385, "epsilon_zeta": 150.591, "bb_type": "--", "chi": -126.647, "glyco_bond": "anti", "C5prime_xyz": [ -1.780, 8.540, -1.433 ], "P_xyz": [ 0.285, 7.562, -2.707 ], "form": ".", "ssZp": 3.111, "Dp": 4.473, "splay_angle": 108.277, "splay_distance": 14.707, "splay_ratio": 0.811, "d22": 8.829, "d64": 11.687, "eta": 155.363, "theta": -14.481, "eta_prime": 174.315, "theta_prime": -104.787, "eta_base": -162.776, "theta_base": -168.501, "v0": 0.836, "v1": -23.081, "v2": 35.345, "v3": -35.763, "v4": 22.043, "amplitude": 37.021, "phase_angle": 17.304, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.127, "filter_rmsd": 0.104, "frame": { "rmsd": 0.010, "origin": [ 200.403, 193.925, 169.169 ], "x_axis": [ -0.487, 0.859, 0.155 ], "y_axis": [ 0.873, 0.484, 0.060 ], "z_axis": [ -0.024, 0.165, -0.986 ], "quaternion": [ -0.052, 0.504, 0.860, 0.065 ] } }, { "index": 1931, "index_chain": 1931, "chain_name": "A", "nt_resnum": 2105, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2105", "linked_nts": [ "///A/2104", "///A/2106" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 138.282, "beta": 92.420, "gamma": 11.811, "delta": 80.471, "epsilon": -127.389, "zeta": -75.402, "epsilon_zeta": -51.987, "bb_type": "--", "chi": -148.041, "glyco_bond": "anti", "C5prime_xyz": [ -1.781, 8.858, -0.224 ], "P_xyz": [ 0.653, 8.472, 0.665 ], "form": ".", "ssZp": 3.817, "Dp": 4.601, "splay_angle": 109.026, "splay_distance": 15.152, "splay_ratio": 0.815, "d22": null, "d64": null, "eta": -53.088, "theta": -81.112, "eta_prime": 18.246, "theta_prime": -110.747, "eta_base": 35.626, "theta_base": -150.490, "v0": -3.903, "v1": -18.663, "v2": 32.753, "v3": -35.870, "v4": 25.100, "amplitude": 36.030, "phase_angle": 24.628, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.004, "origin": [ 209.233, 196.893, 157.789 ], "x_axis": [ 0.489, -0.868, 0.091 ], "y_axis": [ 0.011, 0.110, 0.994 ], "z_axis": [ -0.872, -0.485, 0.063 ], "quaternion": [ 0.645, 0.573, -0.374, -0.341 ] } }, { "index": 1932, "index_chain": 1932, "chain_name": "A", "nt_resnum": 2106, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2106", "linked_nts": [ "///A/2105", "///A/2107" ], "nt_type": "RNA", "dbn": "(", "summary": "turn,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,ribose-zipper,splayed-apart", "alpha": 85.614, "beta": 175.492, "gamma": 47.028, "delta": 88.918, "epsilon": -112.830, "zeta": -118.722, "epsilon_zeta": 5.892, "bb_type": "--", "chi": 148.710, "glyco_bond": "--", "C5prime_xyz": [ -2.408, 7.821, 2.761 ], "P_xyz": [ -1.180, 7.311, 5.033 ], "form": ".", "ssZp": 3.234, "Dp": 3.944, "splay_angle": 21.354, "splay_distance": 3.539, "splay_ratio": 0.186, "d22": null, "d64": null, "eta": -50.151, "theta": -115.416, "eta_prime": -26.171, "theta_prime": -104.860, "eta_base": -19.203, "theta_base": -75.571, "v0": -10.639, "v1": -7.886, "v2": 22.019, "v3": -28.779, "v4": 24.879, "amplitude": 28.649, "phase_angle": 39.775, "puckering": "C4'-exo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7d", "suiteness": 0.414, "filter_rmsd": 0.051, "frame": { "rmsd": 0.029, "origin": [ 196.038, 196.388, 165.220 ], "x_axis": [ -0.180, -0.307, 0.934 ], "y_axis": [ 0.916, -0.398, 0.046 ], "z_axis": [ 0.357, 0.865, 0.353 ], "quaternion": [ -0.440, 0.465, 0.328, 0.695 ] } }, { "index": 1933, "index_chain": 1933, "chain_name": "A", "nt_resnum": 2107, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2107", "linked_nts": [ "///A/2106", "///A/2108" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,ribose-zipper,phosphate", "alpha": 24.637, "beta": 104.390, "gamma": 1.331, "delta": 82.323, "epsilon": -169.443, "zeta": -88.901, "epsilon_zeta": -80.541, "bb_type": "BI", "chi": -139.387, "glyco_bond": "anti", "C5prime_xyz": [ -2.517, 8.854, -0.840 ], "P_xyz": [ -0.489, 9.659, 0.580 ], "form": "B", "ssZp": 3.313, "Dp": 3.828, "splay_angle": 21.816, "splay_distance": 3.624, "splay_ratio": 0.192, "d22": 5.055, "d64": 4.401, "eta": 149.942, "theta": -162.977, "eta_prime": 177.091, "theta_prime": -164.863, "eta_base": -139.106, "theta_base": -140.593, "v0": -14.075, "v1": -8.048, "v2": 25.585, "v3": -34.443, "v4": 30.572, "amplitude": 34.459, "phase_angle": 42.057, "puckering": "C4'-exo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.060, "frame": { "rmsd": 0.014, "origin": [ 195.952, 199.789, 166.193 ], "x_axis": [ 0.393, -0.430, 0.813 ], "y_axis": [ 0.834, -0.204, -0.512 ], "z_axis": [ 0.386, 0.879, 0.279 ], "quaternion": [ 0.606, -0.574, -0.176, -0.522 ] } }, { "index": 1934, "index_chain": 1934, "chain_name": "A", "nt_resnum": 2108, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2108", "linked_nts": [ "///A/2107", "///A/2109" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -68.679, "beta": 168.210, "gamma": 55.422, "delta": 77.974, "epsilon": 123.733, "zeta": 53.933, "epsilon_zeta": 69.801, "bb_type": "--", "chi": -144.240, "glyco_bond": "anti", "C5prime_xyz": [ -1.427, 8.733, -0.419 ], "P_xyz": [ 1.163, 9.074, -0.734 ], "form": "A", "ssZp": 3.367, "Dp": 3.646, "splay_angle": 22.116, "splay_distance": 3.763, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 171.030, "theta": -118.061, "eta_prime": -175.995, "theta_prime": -145.678, "eta_base": -143.607, "theta_base": -129.545, "v0": 2.981, "v1": -24.648, "v2": 35.773, "v3": -35.060, "v4": 20.287, "amplitude": 36.889, "phase_angle": 14.131, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.869, "filter_rmsd": 0.108, "frame": { "rmsd": 0.010, "origin": [ 196.457, 203.360, 166.547 ], "x_axis": [ 0.759, -0.427, 0.491 ], "y_axis": [ 0.572, 0.076, -0.817 ], "z_axis": [ 0.312, 0.901, 0.302 ], "quaternion": [ 0.731, -0.587, -0.062, -0.342 ] } }, { "index": 1935, "index_chain": 1935, "chain_name": "A", "nt_resnum": 2109, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2109", "linked_nts": [ "///A/2108", "///A/2110" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 175.724, "beta": 109.130, "gamma": 128.882, "delta": 83.466, "epsilon": -87.688, "zeta": -128.424, "epsilon_zeta": 40.736, "bb_type": "--", "chi": 171.348, "glyco_bond": "anti", "C5prime_xyz": [ -1.738, 8.241, 2.112 ], "P_xyz": [ -0.320, 9.955, 0.742 ], "form": "A", "ssZp": 4.468, "Dp": 4.537, "splay_angle": 20.741, "splay_distance": 3.431, "splay_ratio": 0.182, "d22": null, "d64": null, "eta": 156.898, "theta": -151.138, "eta_prime": 168.190, "theta_prime": -156.487, "eta_base": -158.063, "theta_base": -124.555, "v0": 1.500, "v1": -22.754, "v2": 34.077, "v3": -34.172, "v4": 20.595, "amplitude": 35.490, "phase_angle": 16.222, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 196.937, 206.383, 168.735 ], "x_axis": [ 0.808, -0.587, 0.044 ], "y_axis": [ 0.170, 0.160, -0.972 ], "z_axis": [ 0.564, 0.794, 0.229 ], "quaternion": [ 0.741, -0.596, 0.175, -0.255 ] } }, { "index": 1936, "index_chain": 1936, "chain_name": "A", "nt_resnum": 2110, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2110", "linked_nts": [ "///A/2109", "///A/2111" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 88.463, "beta": -102.436, "gamma": -169.121, "delta": 81.200, "epsilon": -124.374, "zeta": -57.898, "epsilon_zeta": -66.476, "bb_type": "--", "chi": 164.795, "glyco_bond": "anti", "C5prime_xyz": [ -1.551, 8.005, 2.415 ], "P_xyz": [ -0.035, 9.629, 1.018 ], "form": ".", "ssZp": 4.664, "Dp": 4.791, "splay_angle": 49.752, "splay_distance": 8.399, "splay_ratio": 0.439, "d22": null, "d64": null, "eta": 148.622, "theta": -147.964, "eta_prime": 170.960, "theta_prime": -157.369, "eta_base": -136.104, "theta_base": -156.127, "v0": 5.189, "v1": -28.051, "v2": 38.995, "v3": -36.854, "v4": 19.983, "amplitude": 39.742, "phase_angle": 11.123, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.007, "origin": [ 199.194, 208.062, 170.701 ], "x_axis": [ 0.751, -0.454, -0.480 ], "y_axis": [ -0.252, 0.474, -0.844 ], "z_axis": [ 0.611, 0.754, 0.242 ], "quaternion": [ 0.785, -0.509, 0.347, -0.064 ] } }, { "index": 1937, "index_chain": 1937, "chain_name": "A", "nt_resnum": 2111, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2111", "linked_nts": [ "///A/2110", "///A/2112" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -38.011, "beta": -124.533, "gamma": -4.460, "delta": 78.667, "epsilon": -158.840, "zeta": -52.675, "epsilon_zeta": -106.165, "bb_type": "BI", "chi": -163.383, "glyco_bond": "anti", "C5prime_xyz": [ -1.689, 8.832, 0.616 ], "P_xyz": [ -1.187, 10.508, 2.597 ], "form": ".", "ssZp": 4.481, "Dp": 4.549, "splay_angle": 30.997, "splay_distance": 4.692, "splay_ratio": 0.267, "d22": null, "d64": null, "eta": 176.787, "theta": -169.111, "eta_prime": -179.211, "theta_prime": -152.656, "eta_base": -171.417, "theta_base": -78.226, "v0": -2.720, "v1": -21.495, "v2": 36.017, "v3": -38.479, "v4": 26.044, "amplitude": 38.964, "phase_angle": 22.426, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.043, "frame": { "rmsd": 0.010, "origin": [ 202.875, 211.415, 177.464 ], "x_axis": [ 0.699, -0.463, -0.545 ], "y_axis": [ -0.534, 0.169, -0.829 ], "z_axis": [ 0.476, 0.870, -0.129 ], "quaternion": [ 0.659, -0.644, 0.387, 0.027 ] } }, { "index": 1938, "index_chain": 1938, "chain_name": "A", "nt_resnum": 2112, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2112", "linked_nts": [ "///A/2111", "///A/2113" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -84.134, "beta": 167.507, "gamma": 69.484, "delta": 85.100, "epsilon": -143.039, "zeta": -54.386, "epsilon_zeta": -88.653, "bb_type": "BI", "chi": -172.225, "glyco_bond": "anti", "C5prime_xyz": [ -1.061, 8.481, 1.251 ], "P_xyz": [ 1.566, 8.547, 1.099 ], "form": ".", "ssZp": 4.664, "Dp": 4.682, "splay_angle": 35.949, "splay_distance": 5.349, "splay_ratio": 0.309, "d22": null, "d64": null, "eta": 162.343, "theta": -118.536, "eta_prime": -171.445, "theta_prime": -117.809, "eta_base": -87.252, "theta_base": -70.779, "v0": 6.144, "v1": -26.171, "v2": 35.202, "v3": -32.548, "v4": 16.725, "amplitude": 35.630, "phase_angle": 8.896, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.369, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 205.999, 212.649, 174.188 ], "x_axis": [ -0.090, -0.067, -0.994 ], "y_axis": [ -0.852, 0.521, 0.042 ], "z_axis": [ 0.515, 0.851, -0.104 ], "quaternion": [ 0.576, -0.351, 0.655, 0.341 ] } }, { "index": 1939, "index_chain": 1939, "chain_name": "A", "nt_resnum": 2113, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2113", "linked_nts": [ "///A/2112", "///A/2114" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -69.856, "beta": 173.306, "gamma": 55.993, "delta": 83.100, "epsilon": -139.254, "zeta": -112.282, "epsilon_zeta": -26.972, "bb_type": "--", "chi": -175.711, "glyco_bond": "anti", "C5prime_xyz": [ -1.021, 8.420, 1.485 ], "P_xyz": [ 1.528, 8.269, 2.078 ], "form": "A", "ssZp": 4.646, "Dp": 4.685, "splay_angle": 24.372, "splay_distance": 3.719, "splay_ratio": 0.212, "d22": 4.289, "d64": 4.314, "eta": 164.161, "theta": -130.218, "eta_prime": -168.298, "theta_prime": -136.826, "eta_base": -92.236, "theta_base": -111.415, "v0": 5.184, "v1": -26.291, "v2": 36.301, "v3": -34.313, "v4": 18.366, "amplitude": 36.949, "phase_angle": 10.747, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.768, "filter_rmsd": 0.066, "frame": { "rmsd": 0.008, "origin": [ 206.486, 216.194, 170.212 ], "x_axis": [ -0.862, 0.309, -0.402 ], "y_axis": [ -0.352, 0.204, 0.913 ], "z_axis": [ 0.365, 0.929, -0.067 ], "quaternion": [ 0.262, -0.015, 0.730, 0.631 ] } }, { "index": 1940, "index_chain": 1940, "chain_name": "A", "nt_resnum": 2114, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2114", "linked_nts": [ "///A/2113", "///A/2115" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 147.654, "beta": -130.253, "gamma": 161.401, "delta": 80.473, "epsilon": -131.603, "zeta": -88.249, "epsilon_zeta": -43.355, "bb_type": "BI", "chi": 164.214, "glyco_bond": "anti", "C5prime_xyz": [ -1.208, 7.766, 2.461 ], "P_xyz": [ 1.023, 8.733, 1.493 ], "form": ".", "ssZp": 4.719, "Dp": 4.817, "splay_angle": 22.336, "splay_distance": 3.403, "splay_ratio": 0.205, "d22": 4.723, "d64": 3.883, "eta": 145.593, "theta": -128.202, "eta_prime": 166.674, "theta_prime": -125.857, "eta_base": -141.494, "theta_base": -109.285, "v0": 10.921, "v1": -33.057, "v2": 41.424, "v3": -36.131, "v4": 15.840, "amplitude": 41.505, "phase_angle": 3.587, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.066, "frame": { "rmsd": 0.006, "origin": [ 207.679, 219.252, 168.465 ], "x_axis": [ -0.951, 0.258, 0.172 ], "y_axis": [ 0.176, -0.011, 0.984 ], "z_axis": [ 0.256, 0.966, -0.035 ], "quaternion": [ 0.030, 0.154, 0.703, 0.694 ] } }, { "index": 1941, "index_chain": 1941, "chain_name": "A", "nt_resnum": 2115, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2115", "linked_nts": [ "///A/2114", "///A/2116" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -132.743, "beta": -139.841, "gamma": 113.826, "delta": 142.830, "epsilon": -135.364, "zeta": -102.519, "epsilon_zeta": -32.845, "bb_type": "--", "chi": -135.919, "glyco_bond": "anti", "C5prime_xyz": [ -1.837, 8.720, -0.449 ], "P_xyz": [ 0.756, 8.830, -0.037 ], "form": ".", "ssZp": 1.858, "Dp": 1.826, "splay_angle": 41.057, "splay_distance": 6.887, "splay_ratio": 0.351, "d22": null, "d64": null, "eta": 168.856, "theta": -88.335, "eta_prime": -159.720, "theta_prime": -138.262, "eta_base": -129.182, "theta_base": -121.116, "v0": -23.015, "v1": 35.371, "v2": -33.498, "v3": 21.117, "v4": 0.981, "amplitude": 35.729, "phase_angle": 159.644, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.009, "origin": [ 206.332, 221.979, 166.938 ], "x_axis": [ -0.529, -0.287, 0.799 ], "y_axis": [ 0.805, 0.129, 0.579 ], "z_axis": [ -0.269, 0.949, 0.163 ], "quaternion": [ -0.437, 0.212, 0.611, 0.625 ] } }, { "index": 1942, "index_chain": 1942, "chain_name": "A", "nt_resnum": 2116, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2116", "linked_nts": [ "///A/2115", "///A/2117" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 168.863, "beta": 157.116, "gamma": 133.830, "delta": 85.499, "epsilon": 178.443, "zeta": -78.451, "epsilon_zeta": -103.106, "bb_type": "BI", "chi": -159.830, "glyco_bond": "anti", "C5prime_xyz": [ -1.136, 8.595, 0.505 ], "P_xyz": [ 0.341, 9.748, -1.348 ], "form": "A", "ssZp": 4.332, "Dp": 4.385, "splay_angle": 23.370, "splay_distance": 3.684, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 113.564, "theta": -157.832, "eta_prime": 147.639, "theta_prime": -166.293, "eta_base": -170.649, "theta_base": -143.975, "v0": 7.053, "v1": -27.127, "v2": 35.703, "v3": -32.592, "v4": 16.161, "amplitude": 36.016, "phase_angle": 7.555, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 205.547, 228.734, 165.849 ], "x_axis": [ -0.134, -0.263, 0.955 ], "y_axis": [ 0.989, -0.096, 0.113 ], "z_axis": [ 0.062, 0.960, 0.273 ], "quaternion": [ 0.511, -0.415, -0.437, -0.613 ] } }, { "index": 1943, "index_chain": 1943, "chain_name": "A", "nt_resnum": 2117, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2117", "linked_nts": [ "///A/2116", "///A/2118" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 176.155, "beta": -142.642, "gamma": 149.068, "delta": 81.832, "epsilon": -112.985, "zeta": -83.277, "epsilon_zeta": -29.707, "bb_type": "--", "chi": 174.668, "glyco_bond": "anti", "C5prime_xyz": [ -1.562, 8.286, 1.960 ], "P_xyz": [ 0.849, 9.143, 1.389 ], "form": ".", "ssZp": 4.651, "Dp": 4.681, "splay_angle": 26.007, "splay_distance": 4.034, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 170.914, "theta": -133.561, "eta_prime": -175.700, "theta_prime": -133.450, "eta_base": -137.598, "theta_base": -92.096, "v0": 1.571, "v1": -23.006, "v2": 34.456, "v3": -34.502, "v4": 20.751, "amplitude": 35.869, "phase_angle": 16.134, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.012, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 203.938, 231.807, 167.088 ], "x_axis": [ 0.378, -0.343, 0.860 ], "y_axis": [ 0.919, 0.032, -0.392 ], "z_axis": [ 0.107, 0.939, 0.327 ], "quaternion": [ 0.659, -0.505, -0.286, -0.479 ] } }, { "index": 1944, "index_chain": 1944, "chain_name": "A", "nt_resnum": 2118, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2118", "linked_nts": [ "///A/2117", "///A/2119" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.693, "beta": 160.437, "gamma": 58.343, "delta": 83.348, "epsilon": -160.374, "zeta": -77.319, "epsilon_zeta": -83.055, "bb_type": "BI", "chi": -160.813, "glyco_bond": "anti", "C5prime_xyz": [ -1.401, 8.705, 0.578 ], "P_xyz": [ 1.202, 8.987, 0.447 ], "form": ".", "ssZp": 4.378, "Dp": 4.501, "splay_angle": 21.953, "splay_distance": 3.406, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 154.611, "theta": -147.731, "eta_prime": 179.002, "theta_prime": -147.575, "eta_base": -118.343, "theta_base": -143.844, "v0": 1.426, "v1": -22.712, "v2": 34.103, "v3": -34.233, "v4": 20.713, "amplitude": 35.542, "phase_angle": 16.358, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.346, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 204.842, 234.247, 170.171 ], "x_axis": [ 0.931, -0.281, 0.233 ], "y_axis": [ 0.330, 0.373, -0.867 ], "z_axis": [ 0.157, 0.884, 0.440 ], "quaternion": [ 0.828, -0.529, -0.023, -0.184 ] } }, { "index": 1945, "index_chain": 1945, "chain_name": "A", "nt_resnum": 2119, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2119", "linked_nts": [ "///A/2118", "///A/2120" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -106.684, "beta": -150.991, "gamma": 63.797, "delta": 86.067, "epsilon": 174.652, "zeta": -79.831, "epsilon_zeta": -105.517, "bb_type": "BI", "chi": -143.410, "glyco_bond": "anti", "C5prime_xyz": [ -1.227, 8.652, -0.402 ], "P_xyz": [ 1.354, 8.878, 0.006 ], "form": "A", "ssZp": 3.850, "Dp": 4.205, "splay_angle": 21.490, "splay_distance": 3.503, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": 158.519, "theta": -137.217, "eta_prime": 167.044, "theta_prime": -144.630, "eta_base": -176.701, "theta_base": -125.363, "v0": 3.321, "v1": -23.145, "v2": 33.105, "v3": -32.083, "v4": 18.192, "amplitude": 33.997, "phase_angle": 13.152, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.093, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 204.337, 236.565, 172.616 ], "x_axis": [ 0.802, -0.423, -0.423 ], "y_axis": [ -0.068, 0.638, -0.767 ], "z_axis": [ 0.594, 0.644, 0.483 ], "quaternion": [ 0.855, -0.413, 0.297, -0.104 ] } }, { "index": 1946, "index_chain": 1946, "chain_name": "A", "nt_resnum": 2120, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2120", "linked_nts": [ "///A/2119", "///A/2121" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": 166.395, "beta": -141.318, "gamma": 156.279, "delta": 82.747, "epsilon": -93.509, "zeta": -32.759, "epsilon_zeta": -60.751, "bb_type": "--", "chi": -169.814, "glyco_bond": "anti", "C5prime_xyz": [ -1.465, 8.655, 1.100 ], "P_xyz": [ 0.690, 9.498, -0.125 ], "form": ".", "ssZp": 4.201, "Dp": 4.550, "splay_angle": 33.445, "splay_distance": 5.678, "splay_ratio": 0.289, "d22": 3.466, "d64": 4.729, "eta": 177.839, "theta": -39.519, "eta_prime": -172.066, "theta_prime": -65.187, "eta_base": -139.712, "theta_base": -90.872, "v0": -0.370, "v1": -20.912, "v2": 32.978, "v3": -34.061, "v4": 21.731, "amplitude": 34.910, "phase_angle": 19.153, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.159, "filter_rmsd": 0.105, "frame": { "rmsd": 0.007, "origin": [ 206.719, 237.803, 174.866 ], "x_axis": [ 0.685, -0.103, -0.722 ], "y_axis": [ -0.370, 0.803, -0.466 ], "z_axis": [ 0.628, 0.587, 0.512 ], "quaternion": [ 0.866, -0.304, 0.390, 0.077 ] } }, { "index": 1947, "index_chain": 1947, "chain_name": "A", "nt_resnum": 2121, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2121", "linked_nts": [ "///A/2120", "///A/2122" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,junction-loop,phosphate", "alpha": -178.947, "beta": -138.194, "gamma": 40.676, "delta": 143.763, "epsilon": -107.821, "zeta": 91.907, "epsilon_zeta": 160.272, "bb_type": "--", "chi": -102.272, "glyco_bond": "anti", "C5prime_xyz": [ -2.374, 8.092, -2.069 ], "P_xyz": [ -0.675, 9.972, -1.431 ], "form": ".", "ssZp": 1.035, "Dp": 1.216, "splay_angle": 59.372, "splay_distance": 10.463, "splay_ratio": 0.496, "d22": null, "d64": null, "eta": 65.609, "theta": 115.975, "eta_prime": 113.673, "theta_prime": 84.391, "eta_base": 124.972, "theta_base": 97.105, "v0": -23.506, "v1": 36.154, "v2": -34.318, "v3": 21.615, "v4": 0.965, "amplitude": 36.584, "phase_angle": 159.729, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 211.696, 240.400, 174.014 ], "x_axis": [ -0.405, -0.703, 0.585 ], "y_axis": [ -0.832, 0.549, 0.083 ], "z_axis": [ -0.379, -0.452, -0.807 ], "quaternion": [ -0.290, -0.462, 0.831, -0.111 ] } }, { "index": 1948, "index_chain": 1948, "chain_name": "A", "nt_resnum": 2122, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2122", "linked_nts": [ "///A/2121", "///A/2123" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop", "alpha": 43.908, "beta": -153.821, "gamma": -141.712, "delta": 80.336, "epsilon": -150.204, "zeta": -63.820, "epsilon_zeta": -86.384, "bb_type": "BI", "chi": 168.426, "glyco_bond": "anti", "C5prime_xyz": [ -1.681, 8.128, 2.245 ], "P_xyz": [ -0.896, 10.628, 2.160 ], "form": "A", "ssZp": 4.510, "Dp": 4.649, "splay_angle": 22.948, "splay_distance": 3.616, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 155.363, "theta": 178.106, "eta_prime": 140.493, "theta_prime": -167.654, "eta_base": 156.273, "theta_base": -131.030, "v0": 2.991, "v1": -25.645, "v2": 37.370, "v3": -36.596, "v4": 21.174, "amplitude": 38.550, "phase_angle": 14.215, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 215.936, 249.759, 175.991 ], "x_axis": [ 0.310, -0.937, -0.159 ], "y_axis": [ -0.910, -0.244, -0.334 ], "z_axis": [ 0.274, 0.248, -0.929 ], "quaternion": [ -0.185, 0.788, -0.586, 0.037 ] } }, { "index": 1949, "index_chain": 1949, "chain_name": "A", "nt_resnum": 2123, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2123", "linked_nts": [ "///A/2122", "///A/2124" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -77.346, "beta": -157.005, "gamma": 48.075, "delta": 83.117, "epsilon": -162.523, "zeta": -101.604, "epsilon_zeta": -60.920, "bb_type": "BI", "chi": -154.450, "glyco_bond": "anti", "C5prime_xyz": [ -1.137, 8.653, 0.211 ], "P_xyz": [ 1.318, 9.041, 1.038 ], "form": "A", "ssZp": 4.268, "Dp": 4.531, "splay_angle": 22.981, "splay_distance": 3.567, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 169.360, "theta": -149.087, "eta_prime": -179.409, "theta_prime": -151.696, "eta_base": -140.334, "theta_base": -141.120, "v0": 4.452, "v1": -25.501, "v2": 35.746, "v3": -34.179, "v4": 18.737, "amplitude": 36.517, "phase_angle": 11.790, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.574, "filter_rmsd": 0.040, "frame": { "rmsd": 0.008, "origin": [ 219.041, 250.163, 174.183 ], "x_axis": [ -0.348, -0.851, -0.393 ], "y_axis": [ -0.861, 0.456, -0.224 ], "z_axis": [ 0.370, 0.260, -0.892 ], "quaternion": [ 0.232, -0.522, 0.821, 0.011 ] } }, { "index": 1950, "index_chain": 1950, "chain_name": "A", "nt_resnum": 2124, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2124", "linked_nts": [ "///A/2123", "///A/2125" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": 175.810, "beta": -143.256, "gamma": 138.473, "delta": 80.878, "epsilon": -152.112, "zeta": -73.034, "epsilon_zeta": -79.078, "bb_type": "BI", "chi": 178.663, "glyco_bond": "anti", "C5prime_xyz": [ -1.419, 8.279, 1.743 ], "P_xyz": [ 0.987, 8.902, 0.927 ], "form": ".", "ssZp": 4.640, "Dp": 4.666, "splay_angle": 31.949, "splay_distance": 4.839, "splay_ratio": 0.281, "d22": null, "d64": null, "eta": 143.712, "theta": -148.117, "eta_prime": 158.871, "theta_prime": -152.695, "eta_base": -174.619, "theta_base": -139.465, "v0": 5.643, "v1": -27.735, "v2": 38.081, "v3": -35.864, "v4": 19.048, "amplitude": 38.718, "phase_angle": 10.411, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.006, "origin": [ 221.633, 250.889, 171.842 ], "x_axis": [ -0.757, -0.652, -0.042 ], "y_axis": [ -0.644, 0.756, -0.122 ], "z_axis": [ 0.111, -0.065, -0.992 ], "quaternion": [ 0.041, -0.346, 0.936, -0.050 ] } }, { "index": 1951, "index_chain": 1951, "chain_name": "A", "nt_resnum": 2125, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2125", "linked_nts": [ "///A/2124", "///A/2126" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -67.161, "beta": -169.518, "gamma": 58.188, "delta": 82.177, "epsilon": -111.940, "zeta": -108.020, "epsilon_zeta": -3.921, "bb_type": "--", "chi": -167.668, "glyco_bond": "anti", "C5prime_xyz": [ -1.343, 8.609, 0.991 ], "P_xyz": [ 1.163, 8.879, 1.714 ], "form": ".", "ssZp": 4.430, "Dp": 4.728, "splay_angle": 27.253, "splay_distance": 4.211, "splay_ratio": 0.239, "d22": null, "d64": null, "eta": -168.900, "theta": -147.541, "eta_prime": -164.627, "theta_prime": -139.238, "eta_base": -144.847, "theta_base": -100.178, "v0": 2.907, "v1": -24.625, "v2": 35.818, "v3": -35.122, "v4": 20.313, "amplitude": 36.947, "phase_angle": 14.204, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.851, "filter_rmsd": 0.101, "frame": { "rmsd": 0.005, "origin": [ 223.957, 248.601, 168.267 ], "x_axis": [ -0.978, -0.194, -0.078 ], "y_axis": [ -0.197, 0.980, 0.027 ], "z_axis": [ 0.071, 0.041, -0.997 ], "quaternion": [ 0.038, -0.098, 0.994, 0.017 ] } }, { "index": 1952, "index_chain": 1952, "chain_name": "A", "nt_resnum": 2126, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2126", "linked_nts": [ "///A/2125", "///A/2127" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -51.987, "beta": 124.011, "gamma": 68.436, "delta": 83.949, "epsilon": -151.501, "zeta": -65.945, "epsilon_zeta": -85.557, "bb_type": "BI", "chi": -174.288, "glyco_bond": "anti", "C5prime_xyz": [ -1.412, 8.470, 1.362 ], "P_xyz": [ 1.031, 8.417, 0.398 ], "form": "A", "ssZp": 4.624, "Dp": 4.635, "splay_angle": 23.726, "splay_distance": 3.666, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 158.010, "theta": -128.261, "eta_prime": -177.541, "theta_prime": -139.673, "eta_base": -122.192, "theta_base": -114.900, "v0": 5.063, "v1": -26.020, "v2": 35.917, "v3": -33.985, "v4": 18.267, "amplitude": 36.570, "phase_angle": 10.841, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.711, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 222.932, 248.614, 164.182 ], "x_axis": [ -0.909, 0.416, -0.002 ], "y_axis": [ 0.415, 0.908, 0.058 ], "z_axis": [ 0.026, 0.052, -0.998 ], "quaternion": [ 0.007, 0.213, 0.977, 0.028 ] } }, { "index": 1953, "index_chain": 1953, "chain_name": "A", "nt_resnum": 2127, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2127", "linked_nts": [ "///A/2126", "///A/2128" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -69.152, "beta": -178.772, "gamma": 53.761, "delta": 82.617, "epsilon": -106.695, "zeta": -36.387, "epsilon_zeta": -70.308, "bb_type": "--", "chi": -163.428, "glyco_bond": "anti", "C5prime_xyz": [ -1.316, 8.629, 0.752 ], "P_xyz": [ 1.246, 8.938, 1.215 ], "form": ".", "ssZp": 4.269, "Dp": 4.740, "splay_angle": 24.195, "splay_distance": 4.459, "splay_ratio": 0.222, "d22": 4.270, "d64": 5.629, "eta": 179.701, "theta": -106.233, "eta_prime": -168.809, "theta_prime": -116.064, "eta_base": -124.272, "theta_base": -112.233, "v0": 3.918, "v1": -25.282, "v2": 35.869, "v3": -34.621, "v4": 19.355, "amplitude": 36.761, "phase_angle": 12.650, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.943, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 221.152, 248.156, 161.010 ], "x_axis": [ -0.415, 0.909, 0.038 ], "y_axis": [ 0.910, 0.415, 0.010 ], "z_axis": [ -0.007, 0.038, -0.999 ], "quaternion": [ -0.013, 0.540, 0.841, 0.014 ] } }, { "index": 1954, "index_chain": 1954, "chain_name": "A", "nt_resnum": 2128, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2128", "linked_nts": [ "///A/2127", "///A/2129" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -100.560, "beta": 78.671, "gamma": 178.579, "delta": 83.921, "epsilon": 171.515, "zeta": 32.213, "epsilon_zeta": 139.302, "bb_type": "--", "chi": -178.741, "glyco_bond": "anti", "C5prime_xyz": [ -1.349, 8.419, 1.628 ], "P_xyz": [ -1.828, 10.635, 0.324 ], "form": ".", "ssZp": 3.938, "Dp": 4.148, "splay_angle": 19.516, "splay_distance": 3.697, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": -144.296, "theta": -164.151, "eta_prime": -148.972, "theta_prime": -160.142, "eta_base": -127.769, "theta_base": -123.455, "v0": 1.640, "v1": -21.895, "v2": 32.622, "v3": -32.656, "v4": 19.606, "amplitude": 33.931, "phase_angle": 15.968, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.108, "frame": { "rmsd": 0.008, "origin": [ 218.560, 248.898, 157.458 ], "x_axis": [ -0.198, 0.976, 0.086 ], "y_axis": [ 0.979, 0.201, -0.024 ], "z_axis": [ -0.040, 0.079, -0.996 ], "quaternion": [ -0.041, 0.632, 0.774, 0.018 ] } }, { "index": 1955, "index_chain": 1955, "chain_name": "A", "nt_resnum": 2129, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2129", "linked_nts": [ "///A/2128", "///A/2130" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": 168.889, "beta": 107.407, "gamma": 145.648, "delta": 82.474, "epsilon": -143.602, "zeta": -122.442, "epsilon_zeta": -21.159, "bb_type": "--", "chi": -179.196, "glyco_bond": "anti", "C5prime_xyz": [ -1.492, 8.471, 1.636 ], "P_xyz": [ -0.772, 10.386, 0.001 ], "form": "A", "ssZp": 4.549, "Dp": 4.599, "splay_angle": 21.775, "splay_distance": 3.332, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": 137.564, "theta": 167.484, "eta_prime": 164.211, "theta_prime": -175.628, "eta_base": -143.380, "theta_base": -140.227, "v0": 1.402, "v1": -22.704, "v2": 34.159, "v3": -34.318, "v4": 20.809, "amplitude": 35.615, "phase_angle": 16.439, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 216.181, 250.568, 155.174 ], "x_axis": [ 0.422, 0.896, 0.138 ], "y_axis": [ 0.898, -0.392, -0.200 ], "z_axis": [ -0.125, 0.208, -0.970 ], "quaternion": [ -0.122, 0.834, 0.537, 0.004 ] } }, { "index": 1956, "index_chain": 1956, "chain_name": "A", "nt_resnum": 2130, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2130", "linked_nts": [ "///A/2129", "///A/2131" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 27.321, "beta": 108.477, "gamma": 13.457, "delta": 79.671, "epsilon": -172.667, "zeta": -79.903, "epsilon_zeta": -92.765, "bb_type": "BI", "chi": -158.059, "glyco_bond": "anti", "C5prime_xyz": [ -1.929, 8.896, 0.355 ], "P_xyz": [ 0.479, 8.808, 1.371 ], "form": "A", "ssZp": 4.171, "Dp": 4.277, "splay_angle": 22.156, "splay_distance": 3.624, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 169.638, "theta": -122.944, "eta_prime": -174.627, "theta_prime": -134.043, "eta_base": -133.123, "theta_base": -97.072, "v0": -5.306, "v1": -17.530, "v2": 32.342, "v3": -36.332, "v4": 26.264, "amplitude": 36.247, "phase_angle": 26.842, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 214.811, 252.179, 152.598 ], "x_axis": [ 0.850, 0.525, 0.046 ], "y_axis": [ 0.517, -0.814, -0.264 ], "z_axis": [ -0.101, 0.248, -0.963 ], "quaternion": [ -0.134, 0.952, 0.273, -0.014 ] } }, { "index": 1957, "index_chain": 1957, "chain_name": "A", "nt_resnum": 2131, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2131", "linked_nts": [ "///A/2130", "///A/2132" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 157.932, "beta": -148.658, "gamma": 160.629, "delta": 79.065, "epsilon": -95.918, "zeta": -112.094, "epsilon_zeta": 16.177, "bb_type": "--", "chi": 179.437, "glyco_bond": "anti", "C5prime_xyz": [ -1.327, 8.329, 1.737 ], "P_xyz": [ 0.752, 9.545, 0.754 ], "form": "A", "ssZp": 4.670, "Dp": 4.776, "splay_angle": 20.625, "splay_distance": 3.191, "splay_ratio": 0.179, "d22": null, "d64": null, "eta": 164.691, "theta": -157.939, "eta_prime": 177.508, "theta_prime": -153.793, "eta_base": -123.889, "theta_base": -125.034, "v0": 4.560, "v1": -26.931, "v2": 38.008, "v3": -36.408, "v4": 20.047, "amplitude": 38.864, "phase_angle": 12.046, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.403, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 215.614, 254.469, 149.907 ], "x_axis": [ 0.985, -0.124, -0.121 ], "y_axis": [ -0.153, -0.952, -0.267 ], "z_axis": [ -0.082, 0.281, -0.956 ], "quaternion": [ -0.139, 0.986, -0.070, -0.051 ] } }, { "index": 1958, "index_chain": 1958, "chain_name": "A", "nt_resnum": 2132, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2132", "linked_nts": [ "///A/2131", "///A/2133" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -52.109, "beta": 122.680, "gamma": 64.574, "delta": 79.391, "epsilon": -147.175, "zeta": -121.541, "epsilon_zeta": -25.634, "bb_type": "--", "chi": -179.273, "glyco_bond": "anti", "C5prime_xyz": [ -2.052, 8.516, 1.557 ], "P_xyz": [ 0.509, 8.823, 1.170 ], "form": "A", "ssZp": 4.488, "Dp": 4.540, "splay_angle": 22.333, "splay_distance": 3.434, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 153.817, "theta": -146.406, "eta_prime": 174.821, "theta_prime": -150.183, "eta_base": -140.969, "theta_base": -126.563, "v0": -2.979, "v1": -20.398, "v2": 34.688, "v3": -37.383, "v4": 25.427, "amplitude": 37.693, "phase_angle": 23.034, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.538, "filter_rmsd": 0.037, "frame": { "rmsd": 0.006, "origin": [ 216.269, 256.094, 147.240 ], "x_axis": [ 0.753, -0.657, 0.034 ], "y_axis": [ -0.630, -0.735, -0.250 ], "z_axis": [ 0.189, 0.167, -0.968 ], "quaternion": [ -0.112, 0.929, -0.346, 0.060 ] } }, { "index": 1959, "index_chain": 1959, "chain_name": "A", "nt_resnum": 2133, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2133", "linked_nts": [ "///A/2132", "///A/2134" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 25.756, "beta": 120.851, "gamma": 5.104, "delta": 78.980, "epsilon": -161.474, "zeta": -103.719, "epsilon_zeta": -57.755, "bb_type": "BI", "chi": -152.567, "glyco_bond": "anti", "C5prime_xyz": [ -1.470, 8.872, 0.080 ], "P_xyz": [ 0.949, 8.906, 1.070 ], "form": "A", "ssZp": 4.177, "Dp": 4.489, "splay_angle": 20.812, "splay_distance": 3.322, "splay_ratio": 0.181, "d22": null, "d64": null, "eta": 173.602, "theta": -138.421, "eta_prime": -178.382, "theta_prime": -145.702, "eta_base": -141.212, "theta_base": -124.818, "v0": -0.822, "v1": -22.196, "v2": 35.537, "v3": -37.038, "v4": 23.853, "amplitude": 37.785, "phase_angle": 19.865, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.005, "origin": [ 218.173, 257.544, 144.776 ], "x_axis": [ 0.230, -0.966, -0.120 ], "y_axis": [ -0.944, -0.192, -0.268 ], "z_axis": [ 0.236, 0.175, -0.956 ], "quaternion": [ -0.144, 0.771, -0.619, 0.038 ] } }, { "index": 1960, "index_chain": 1960, "chain_name": "A", "nt_resnum": 2134, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2134", "linked_nts": [ "///A/2133", "///A/2135" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 148.396, "beta": -133.132, "gamma": 162.903, "delta": 80.746, "epsilon": -116.664, "zeta": -134.626, "epsilon_zeta": 17.961, "bb_type": "--", "chi": 172.048, "glyco_bond": "anti", "C5prime_xyz": [ -1.457, 8.098, 2.108 ], "P_xyz": [ 0.721, 9.149, 1.142 ], "form": "A", "ssZp": 4.775, "Dp": 4.782, "splay_angle": 22.296, "splay_distance": 3.322, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 157.351, "theta": -160.789, "eta_prime": 169.051, "theta_prime": -156.150, "eta_base": -152.052, "theta_base": -131.914, "v0": 4.977, "v1": -26.802, "v2": 37.341, "v3": -35.532, "v4": 19.252, "amplitude": 38.082, "phase_angle": 11.320, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.124, "filter_rmsd": 0.038, "frame": { "rmsd": 0.012, "origin": [ 219.949, 257.965, 142.000 ], "x_axis": [ -0.274, -0.961, 0.038 ], "y_axis": [ -0.944, 0.261, -0.200 ], "z_axis": [ 0.182, -0.090, -0.979 ], "quaternion": [ 0.046, -0.601, 0.793, -0.091 ] } }, { "index": 1961, "index_chain": 1961, "chain_name": "A", "nt_resnum": 2135, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2135", "linked_nts": [ "///A/2134", "///A/2136" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 5.365, "beta": 109.358, "gamma": 25.137, "delta": 76.357, "epsilon": -145.364, "zeta": -84.220, "epsilon_zeta": -61.143, "bb_type": "BI", "chi": -169.915, "glyco_bond": "anti", "C5prime_xyz": [ -2.052, 8.748, 1.039 ], "P_xyz": [ 0.471, 8.525, 1.618 ], "form": "A", "ssZp": 4.548, "Dp": 4.602, "splay_angle": 22.590, "splay_distance": 3.575, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 168.525, "theta": -139.192, "eta_prime": -179.839, "theta_prime": -141.953, "eta_base": -144.573, "theta_base": -115.450, "v0": -3.471, "v1": -20.881, "v2": 35.988, "v3": -39.047, "v4": 26.738, "amplitude": 39.271, "phase_angle": 23.594, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 221.872, 257.010, 139.465 ], "x_axis": [ -0.733, -0.680, 0.029 ], "y_axis": [ -0.667, 0.710, -0.225 ], "z_axis": [ 0.132, -0.184, -0.974 ], "quaternion": [ 0.028, -0.364, 0.924, -0.111 ] } }, { "index": 1962, "index_chain": 1962, "chain_name": "A", "nt_resnum": 2136, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2136", "linked_nts": [ "///A/2135", "///A/2137" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -48.370, "beta": 163.478, "gamma": 45.329, "delta": 79.314, "epsilon": -147.648, "zeta": -70.329, "epsilon_zeta": -77.319, "bb_type": "BI", "chi": -166.422, "glyco_bond": "anti", "C5prime_xyz": [ -1.461, 8.727, 0.884 ], "P_xyz": [ 1.088, 9.149, 1.249 ], "form": "A", "ssZp": 4.549, "Dp": 4.640, "splay_angle": 23.550, "splay_distance": 3.789, "splay_ratio": 0.208, "d22": 3.998, "d64": 4.357, "eta": 168.827, "theta": -141.979, "eta_prime": 179.599, "theta_prime": -140.197, "eta_base": -134.832, "theta_base": -110.973, "v0": 0.945, "v1": -23.990, "v2": 36.649, "v3": -37.131, "v4": 22.769, "amplitude": 38.370, "phase_angle": 17.222, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.627, "filter_rmsd": 0.059, "frame": { "rmsd": 0.005, "origin": [ 222.478, 254.749, 136.762 ], "x_axis": [ -0.992, -0.116, -0.041 ], "y_axis": [ -0.104, 0.969, -0.225 ], "z_axis": [ 0.065, -0.220, -0.973 ], "quaternion": [ 0.027, -0.056, 0.992, -0.112 ] } }, { "index": 1963, "index_chain": 1963, "chain_name": "A", "nt_resnum": 2137, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2137", "linked_nts": [ "///A/2136", "///A/2138" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -60.689, "beta": 166.335, "gamma": 60.720, "delta": 79.867, "epsilon": -174.048, "zeta": -81.236, "epsilon_zeta": -92.812, "bb_type": "BI", "chi": -166.727, "glyco_bond": "anti", "C5prime_xyz": [ -1.719, 8.736, 0.889 ], "P_xyz": [ 0.812, 9.390, 1.045 ], "form": "A", "ssZp": 4.341, "Dp": 4.365, "splay_angle": 21.536, "splay_distance": 3.478, "splay_ratio": 0.192, "d22": 4.364, "d64": 4.420, "eta": 168.824, "theta": -138.499, "eta_prime": -170.431, "theta_prime": -145.413, "eta_base": -122.028, "theta_base": -116.644, "v0": -1.401, "v1": -21.222, "v2": 34.469, "v3": -36.286, "v4": 23.746, "amplitude": 36.862, "phase_angle": 20.760, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.882, "filter_rmsd": 0.098, "frame": { "rmsd": 0.007, "origin": [ 221.332, 252.528, 133.914 ], "x_axis": [ -0.885, 0.452, -0.110 ], "y_axis": [ 0.465, 0.862, -0.203 ], "z_axis": [ 0.003, -0.230, -0.973 ], "quaternion": [ 0.029, 0.238, 0.964, -0.112 ] } }, { "index": 1964, "index_chain": 1964, "chain_name": "A", "nt_resnum": 2138, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2138", "linked_nts": [ "///A/2137", "///A/2139" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": 177.130, "beta": -144.481, "gamma": 146.915, "delta": 80.168, "epsilon": -101.449, "zeta": -136.523, "epsilon_zeta": 35.074, "bb_type": "--", "chi": -175.694, "glyco_bond": "anti", "C5prime_xyz": [ -1.566, 8.556, 1.439 ], "P_xyz": [ 0.743, 9.417, 0.573 ], "form": ".", "ssZp": 4.470, "Dp": 4.637, "splay_angle": 21.845, "splay_distance": 3.432, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 170.736, "theta": -164.158, "eta_prime": -177.460, "theta_prime": -147.637, "eta_base": -133.931, "theta_base": -137.134, "v0": 0.301, "v1": -22.675, "v2": 35.231, "v3": -36.070, "v4": 22.482, "amplitude": 37.079, "phase_angle": 18.165, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.105, "frame": { "rmsd": 0.004, "origin": [ 219.680, 250.970, 131.280 ], "x_axis": [ -0.449, 0.862, -0.234 ], "y_axis": [ 0.891, 0.414, -0.186 ], "z_axis": [ -0.064, -0.292, -0.954 ], "quaternion": [ 0.051, 0.522, 0.839, -0.142 ] } }, { "index": 1965, "index_chain": 1965, "chain_name": "A", "nt_resnum": 2139, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2139", "linked_nts": [ "///A/2138", "///A/2140" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,bulge,internal-loop,ribose-zipper,splayed-apart", "alpha": -13.503, "beta": 141.085, "gamma": 37.750, "delta": 141.537, "epsilon": -87.780, "zeta": -55.283, "epsilon_zeta": -32.497, "bb_type": "--", "chi": -101.107, "glyco_bond": "anti", "C5prime_xyz": [ -1.740, 8.052, -2.147 ], "P_xyz": [ 0.855, 8.151, -1.904 ], "form": ".", "ssZp": 0.090, "Dp": 1.200, "splay_angle": 109.176, "splay_distance": 17.537, "splay_ratio": 0.815, "d22": null, "d64": null, "eta": -151.885, "theta": -2.866, "eta_prime": -136.560, "theta_prime": -43.197, "eta_base": -135.185, "theta_base": -19.963, "v0": -16.596, "v1": 29.430, "v2": -30.494, "v3": 21.698, "v4": -3.413, "amplitude": 31.242, "phase_angle": 167.437, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 219.219, 249.509, 128.209 ], "x_axis": [ 0.054, 0.998, -0.007 ], "y_axis": [ 0.901, -0.052, -0.431 ], "z_axis": [ -0.431, 0.017, -0.902 ], "quaternion": [ -0.158, 0.709, 0.670, -0.155 ] } }, { "index": 1966, "index_chain": 1966, "chain_name": "A", "nt_resnum": 2140, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2140", "linked_nts": [ "///A/2139", "///A/2141" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,bulge,ribose-zipper,cap-donor,phosphate,splayed-apart", "alpha": 162.072, "beta": 164.293, "gamma": -171.028, "delta": 80.840, "epsilon": 149.213, "zeta": -85.059, "epsilon_zeta": -125.727, "bb_type": "BI", "chi": -168.069, "glyco_bond": "anti", "C5prime_xyz": [ -1.336, 8.622, 0.999 ], "P_xyz": [ -0.582, 10.959, 0.046 ], "form": ".", "ssZp": 3.875, "Dp": 3.969, "splay_angle": 120.449, "splay_distance": 12.343, "splay_ratio": 0.876, "d22": null, "d64": null, "eta": 162.722, "theta": 89.825, "eta_prime": -163.144, "theta_prime": 64.446, "eta_base": -150.898, "theta_base": -30.609, "v0": 3.060, "v1": -24.346, "v2": 35.097, "v3": -34.355, "v4": 19.820, "amplitude": 36.158, "phase_angle": 13.919, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.005, "origin": [ 235.146, 250.561, 120.943 ], "x_axis": [ 0.266, 0.225, 0.937 ], "y_axis": [ -0.719, -0.601, 0.348 ], "z_axis": [ 0.642, -0.767, 0.002 ], "quaternion": [ 0.408, 0.683, -0.181, 0.578 ] } }, { "index": 1967, "index_chain": 1967, "chain_name": "A", "nt_resnum": 2141, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2141", "linked_nts": [ "///A/2140", "///A/2142" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-stack,non-pair-contact,bulge,cap-acceptor,phosphate,splayed-apart", "alpha": -147.619, "beta": 119.052, "gamma": 68.127, "delta": 149.833, "epsilon": -143.221, "zeta": 156.139, "epsilon_zeta": 60.640, "bb_type": "--", "chi": -25.825, "glyco_bond": "syn", "C5prime_xyz": [ -4.213, 4.931, -2.880 ], "P_xyz": [ -2.423, 3.149, -3.643 ], "form": ".", "ssZp": -0.414, "Dp": 1.774, "splay_angle": 85.649, "splay_distance": 13.886, "splay_ratio": 0.680, "d22": null, "d64": null, "eta": 45.837, "theta": 148.565, "eta_prime": 86.604, "theta_prime": 86.518, "eta_base": 128.295, "theta_base": 117.295, "v0": -17.497, "v1": 33.216, "v2": -35.388, "v3": 26.190, "v4": -5.626, "amplitude": 35.916, "phase_angle": 170.157, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.006, "origin": [ 229.590, 239.687, 122.750 ], "x_axis": [ -0.398, 0.477, 0.784 ], "y_axis": [ -0.486, 0.614, -0.621 ], "z_axis": [ -0.778, -0.628, -0.013 ], "quaternion": [ 0.549, 0.003, -0.712, 0.439 ] } }, { "index": 1968, "index_chain": 1968, "chain_name": "A", "nt_resnum": 2142, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2142", "linked_nts": [ "///A/2141", "///A/2143" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,non-stack,non-pair-contact,bulge,phosphate,splayed-apart", "alpha": -85.663, "beta": 67.907, "gamma": -164.451, "delta": 79.116, "epsilon": -115.733, "zeta": 70.956, "epsilon_zeta": 173.311, "bb_type": "--", "chi": -87.169, "glyco_bond": "--", "C5prime_xyz": [ -2.708, 7.258, -3.061 ], "P_xyz": [ -5.151, 7.850, -3.771 ], "form": ".", "ssZp": -0.859, "Dp": 4.687, "splay_angle": 115.131, "splay_distance": 17.402, "splay_ratio": 0.844, "d22": null, "d64": null, "eta": -100.366, "theta": -49.005, "eta_prime": -128.232, "theta_prime": -30.436, "eta_base": -112.297, "theta_base": -19.682, "v0": -1.280, "v1": -21.675, "v2": 35.134, "v3": -36.889, "v4": 24.101, "amplitude": 37.529, "phase_angle": 20.577, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.006, "origin": [ 226.938, 233.676, 110.516 ], "x_axis": [ 0.153, -0.253, -0.955 ], "y_axis": [ 0.543, 0.829, -0.133 ], "z_axis": [ 0.826, -0.498, 0.264 ], "quaternion": [ 0.749, 0.122, 0.594, -0.266 ] } }, { "index": 1969, "index_chain": 1969, "chain_name": "A", "nt_resnum": 2143, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2143", "linked_nts": [ "///A/2142", "///A/2144" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,bulge,splayed-apart", "alpha": 162.817, "beta": 174.066, "gamma": 160.403, "delta": 85.070, "epsilon": 173.432, "zeta": 48.414, "epsilon_zeta": 125.018, "bb_type": "--", "chi": -177.859, "glyco_bond": "anti", "C5prime_xyz": [ -1.681, 8.491, 1.534 ], "P_xyz": [ -0.071, 10.397, 0.737 ], "form": ".", "ssZp": 3.919, "Dp": 4.108, "splay_angle": 34.247, "splay_distance": 5.393, "splay_ratio": 0.299, "d22": null, "d64": null, "eta": -174.238, "theta": -108.243, "eta_prime": -146.192, "theta_prime": -123.999, "eta_base": -109.867, "theta_base": -58.844, "v0": -1.476, "v1": -18.702, "v2": 30.401, "v3": -32.158, "v4": 21.232, "amplitude": 32.593, "phase_angle": 21.132, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.005, "origin": [ 225.644, 250.856, 112.969 ], "x_axis": [ 0.510, 0.071, 0.857 ], "y_axis": [ 0.521, -0.818, -0.243 ], "z_axis": [ 0.684, 0.571, -0.455 ], "quaternion": [ -0.244, 0.834, 0.177, 0.462 ] } }, { "index": 1970, "index_chain": 1970, "chain_name": "A", "nt_resnum": 2144, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2144", "linked_nts": [ "///A/2143", "///A/2145" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,bulge,cap-acceptor,phosphate", "alpha": -168.775, "beta": 95.395, "gamma": 123.881, "delta": 85.338, "epsilon": 172.406, "zeta": 37.436, "epsilon_zeta": 134.971, "bb_type": "--", "chi": 168.303, "glyco_bond": "anti", "C5prime_xyz": [ -1.505, 7.987, 2.278 ], "P_xyz": [ -0.141, 9.482, 0.623 ], "form": ".", "ssZp": 3.849, "Dp": 4.289, "splay_angle": 80.381, "splay_distance": 12.549, "splay_ratio": 0.657, "d22": null, "d64": null, "eta": 130.828, "theta": -60.165, "eta_prime": 177.900, "theta_prime": -99.124, "eta_base": -81.215, "theta_base": -141.396, "v0": 6.595, "v1": -26.435, "v2": 35.060, "v3": -32.262, "v4": 16.239, "amplitude": 35.419, "phase_angle": 8.159, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 230.841, 251.000, 114.398 ], "x_axis": [ 0.642, -0.755, 0.133 ], "y_axis": [ -0.244, -0.366, -0.898 ], "z_axis": [ 0.726, 0.544, -0.420 ], "quaternion": [ -0.463, 0.779, -0.321, 0.276 ] } }, { "index": 1971, "index_chain": 1971, "chain_name": "A", "nt_resnum": 2145, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2145", "linked_nts": [ "///A/2144", "///A/2146" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-pair-contact,bulge,phosphate", "alpha": 164.938, "beta": -124.361, "gamma": -84.006, "delta": 80.775, "epsilon": -105.666, "zeta": -96.800, "epsilon_zeta": -8.866, "bb_type": "--", "chi": -104.509, "glyco_bond": "anti", "C5prime_xyz": [ -2.408, 7.986, -2.465 ], "P_xyz": [ -3.786, 9.632, -3.972 ], "form": ".", "ssZp": 0.511, "Dp": 4.571, "splay_angle": 66.086, "splay_distance": 9.862, "splay_ratio": 0.573, "d22": null, "d64": null, "eta": -32.838, "theta": 167.568, "eta_prime": 0.547, "theta_prime": -166.666, "eta_base": 26.655, "theta_base": -114.371, "v0": -3.079, "v1": -19.442, "v2": 33.116, "v3": -35.852, "v4": 24.551, "amplitude": 36.075, "phase_angle": 23.369, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 237.104, 261.565, 111.824 ], "x_axis": [ -0.156, 0.136, 0.978 ], "y_axis": [ -0.535, -0.844, 0.032 ], "z_axis": [ 0.831, -0.518, 0.205 ], "quaternion": [ 0.226, 0.609, -0.164, 0.742 ] } }, { "index": 1972, "index_chain": 1972, "chain_name": "A", "nt_resnum": 2146, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2146", "linked_nts": [ "///A/2145", "///A/2147" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-stack,non-pair-contact,bulge,cap-donor,phosphate", "alpha": -51.833, "beta": -175.662, "gamma": 73.538, "delta": 79.810, "epsilon": -125.785, "zeta": -36.832, "epsilon_zeta": -88.953, "bb_type": "--", "chi": -42.505, "glyco_bond": "--", "C5prime_xyz": [ -4.176, 5.155, -3.171 ], "P_xyz": [ -3.381, 3.328, -4.881 ], "form": ".", "ssZp": -3.673, "Dp": 4.688, "splay_angle": 73.883, "splay_distance": 10.647, "splay_ratio": 0.605, "d22": null, "d64": null, "eta": -150.871, "theta": -86.687, "eta_prime": -143.421, "theta_prime": -131.188, "eta_base": -134.908, "theta_base": 148.787, "v0": -0.676, "v1": -22.015, "v2": 35.047, "v3": -36.413, "v4": 23.407, "amplitude": 37.210, "phase_angle": 19.634, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.042, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 231.942, 254.889, 116.926 ], "x_axis": [ -0.728, -0.308, 0.613 ], "y_axis": [ 0.286, -0.948, -0.137 ], "z_axis": [ 0.624, 0.075, 0.778 ], "quaternion": [ -0.160, 0.333, -0.017, 0.929 ] } }, { "index": 1973, "index_chain": 1973, "chain_name": "A", "nt_resnum": 2147, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2147", "linked_nts": [ "///A/2146", "///A/2148" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-stack,non-canonical,non-pair-contact,multiplet,bulge,ribose-zipper,cap-acceptor", "alpha": -173.125, "beta": 144.960, "gamma": 61.377, "delta": 145.748, "epsilon": -99.469, "zeta": -161.886, "epsilon_zeta": 62.417, "bb_type": "BII", "chi": -163.744, "glyco_bond": "anti", "C5prime_xyz": [ -1.394, 8.383, 1.223 ], "P_xyz": [ 0.940, 7.628, 2.175 ], "form": ".", "ssZp": 1.309, "Dp": 1.321, "splay_angle": 58.041, "splay_distance": 8.702, "splay_ratio": 0.526, "d22": null, "d64": null, "eta": 51.042, "theta": -164.831, "eta_prime": 100.917, "theta_prime": -159.474, "eta_base": 62.535, "theta_base": -127.442, "v0": -14.231, "v1": 29.046, "v2": -31.977, "v3": 24.581, "v4": -6.687, "amplitude": 32.214, "phase_angle": 173.043, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1z", "suiteness": 0.026, "filter_rmsd": 0.106, "frame": { "rmsd": 0.005, "origin": [ 238.119, 246.307, 118.171 ], "x_axis": [ 0.738, -0.116, -0.664 ], "y_axis": [ -0.674, -0.165, -0.720 ], "z_axis": [ -0.026, 0.979, -0.200 ], "quaternion": [ 0.586, -0.725, 0.273, 0.238 ] } }, { "index": 1974, "index_chain": 1974, "chain_name": "A", "nt_resnum": 2148, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2148", "linked_nts": [ "///A/2147", "///A/2149" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-pair-contact,bulge,ribose-zipper,cap-acceptor,phosphate,splayed-apart", "alpha": 169.587, "beta": 170.294, "gamma": 162.911, "delta": 147.786, "epsilon": -153.344, "zeta": 156.733, "epsilon_zeta": 49.924, "bb_type": "--", "chi": 44.147, "glyco_bond": "syn", "C5prime_xyz": [ -5.418, 3.633, 0.293 ], "P_xyz": [ -5.978, 1.445, 1.600 ], "form": ".", "ssZp": -1.850, "Dp": 1.938, "splay_angle": 111.726, "splay_distance": 15.412, "splay_ratio": 0.828, "d22": null, "d64": null, "eta": -140.546, "theta": 119.470, "eta_prime": -157.966, "theta_prime": 155.700, "eta_base": -147.204, "theta_base": -172.074, "v0": -20.630, "v1": 35.218, "v2": -35.545, "v3": 24.546, "v4": -2.645, "amplitude": 36.744, "phase_angle": 165.321, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.003, "origin": [ 230.899, 250.724, 120.194 ], "x_axis": [ 0.420, 0.304, 0.855 ], "y_axis": [ -0.728, -0.450, 0.518 ], "z_axis": [ 0.542, -0.840, 0.032 ], "quaternion": [ 0.501, 0.678, -0.156, 0.515 ] } }, { "index": 1975, "index_chain": 1975, "chain_name": "A", "nt_resnum": 2149, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2149", "linked_nts": [ "///A/2148", "///A/2150" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart", "alpha": -175.866, "beta": -125.421, "gamma": 156.554, "delta": 82.637, "epsilon": -101.333, "zeta": -148.663, "epsilon_zeta": 47.330, "bb_type": "--", "chi": 155.615, "glyco_bond": "anti", "C5prime_xyz": [ -1.819, 7.606, 2.802 ], "P_xyz": [ 0.638, 8.412, 2.391 ], "form": ".", "ssZp": 4.611, "Dp": 4.753, "splay_angle": 27.938, "splay_distance": 4.057, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": -130.981, "theta": -143.915, "eta_prime": -170.650, "theta_prime": -151.072, "eta_base": 176.534, "theta_base": -141.959, "v0": 5.009, "v1": -26.129, "v2": 36.139, "v3": -34.219, "v4": 18.448, "amplitude": 36.810, "phase_angle": 10.955, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 216.641, 250.486, 126.042 ], "x_axis": [ 0.586, 0.807, -0.066 ], "y_axis": [ 0.689, -0.540, -0.484 ], "z_axis": [ -0.427, 0.239, -0.872 ], "quaternion": [ -0.209, 0.866, 0.432, -0.142 ] } }, { "index": 1976, "index_chain": 1976, "chain_name": "A", "nt_resnum": 2150, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2150", "linked_nts": [ "///A/2149", "///A/2151" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 152.477, "beta": -127.319, "gamma": 140.821, "delta": 80.608, "epsilon": 174.353, "zeta": 128.116, "epsilon_zeta": 46.237, "bb_type": "--", "chi": 166.241, "glyco_bond": "anti", "C5prime_xyz": [ -1.337, 7.858, 2.345 ], "P_xyz": [ 1.072, 8.255, 1.396 ], "form": ".", "ssZp": 4.173, "Dp": 4.491, "splay_angle": 8.070, "splay_distance": 1.333, "splay_ratio": 0.095, "d22": null, "d64": null, "eta": 123.429, "theta": 17.635, "eta_prime": 152.105, "theta_prime": -92.038, "eta_base": -173.928, "theta_base": -63.082, "v0": 10.173, "v1": -31.850, "v2": 40.207, "v3": -35.335, "v4": 15.915, "amplitude": 40.318, "phase_angle": 4.264, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 212.995, 251.390, 124.511 ], "x_axis": [ 0.947, 0.316, -0.054 ], "y_axis": [ 0.264, -0.863, -0.430 ], "z_axis": [ -0.183, 0.393, -0.901 ], "quaternion": [ -0.214, 0.963, 0.150, -0.061 ] } }, { "index": 1977, "index_chain": 1977, "chain_name": "A", "nt_resnum": 2151, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2151", "linked_nts": [ "///A/2150", "///A/2152" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,cap-donor,cap-acceptor,phosphate", "alpha": 149.052, "beta": 90.720, "gamma": 77.633, "delta": 86.552, "epsilon": 159.328, "zeta": 163.508, "epsilon_zeta": -4.180, "bb_type": "--", "chi": -98.328, "glyco_bond": "anti", "C5prime_xyz": [ -2.006, 7.479, -2.770 ], "P_xyz": [ -1.098, 5.244, -3.860 ], "form": ".", "ssZp": 1.699, "Dp": 4.079, "splay_angle": 47.274, "splay_distance": 7.336, "splay_ratio": 0.475, "d22": null, "d64": null, "eta": 4.081, "theta": 115.711, "eta_prime": 140.813, "theta_prime": -165.595, "eta_base": -135.200, "theta_base": 178.980, "v0": 7.222, "v1": -25.455, "v2": 32.946, "v3": -29.677, "v4": 14.290, "amplitude": 33.149, "phase_angle": 6.354, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.107, "frame": { "rmsd": 0.006, "origin": [ 213.149, 251.247, 123.195 ], "x_axis": [ 0.895, -0.388, -0.220 ], "y_axis": [ -0.266, -0.068, -0.962 ], "z_axis": [ 0.358, 0.919, -0.164 ], "quaternion": [ 0.645, -0.729, 0.224, -0.047 ] } }, { "index": 1978, "index_chain": 1978, "chain_name": "A", "nt_resnum": 2152, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2152", "linked_nts": [ "///A/2151", "///A/2153" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart", "alpha": -145.193, "beta": -87.761, "gamma": 161.444, "delta": 87.610, "epsilon": 157.714, "zeta": 64.366, "epsilon_zeta": 93.349, "bb_type": "--", "chi": -66.701, "glyco_bond": "--", "C5prime_xyz": [ -2.636, 5.809, -3.478 ], "P_xyz": [ -2.831, 3.178, -3.607 ], "form": ".", "ssZp": -0.658, "Dp": 4.194, "splay_angle": 101.504, "splay_distance": 14.237, "splay_ratio": 0.776, "d22": null, "d64": null, "eta": -124.267, "theta": -47.576, "eta_prime": 161.382, "theta_prime": -120.144, "eta_base": 155.998, "theta_base": -100.303, "v0": 12.255, "v1": -29.705, "v2": 34.772, "v3": -28.736, "v4": 10.555, "amplitude": 34.783, "phase_angle": 358.571, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.036, "frame": { "rmsd": 0.008, "origin": [ 212.434, 256.073, 117.717 ], "x_axis": [ 0.993, -0.118, 0.030 ], "y_axis": [ 0.036, 0.050, -0.998 ], "z_axis": [ 0.116, 0.992, 0.054 ], "quaternion": [ 0.724, -0.687, 0.030, -0.053 ] } }, { "index": 1979, "index_chain": 1979, "chain_name": "A", "nt_resnum": 2153, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2153", "linked_nts": [ "///A/2152", "///A/2154" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-pair-contact,internal-loop,cap-acceptor,phosphate,splayed-apart", "alpha": -98.658, "beta": -101.420, "gamma": 44.818, "delta": 142.678, "epsilon": -150.002, "zeta": 144.654, "epsilon_zeta": 65.344, "bb_type": "--", "chi": 12.130, "glyco_bond": "--", "C5prime_xyz": [ -5.655, 4.721, -1.127 ], "P_xyz": [ -5.588, 5.076, -3.744 ], "form": ".", "ssZp": -0.800, "Dp": 2.089, "splay_angle": 39.049, "splay_distance": 6.575, "splay_ratio": 0.387, "d22": null, "d64": null, "eta": -127.235, "theta": 136.918, "eta_prime": -84.630, "theta_prime": 140.751, "eta_base": -108.425, "theta_base": -174.379, "v0": -28.435, "v1": 40.713, "v2": -36.656, "v3": 21.238, "v4": 4.268, "amplitude": 40.386, "phase_angle": 155.179, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 217.785, 252.105, 105.135 ], "x_axis": [ 0.342, -0.166, -0.925 ], "y_axis": [ -0.327, 0.902, -0.283 ], "z_axis": [ 0.881, 0.399, 0.254 ], "quaternion": [ 0.790, -0.216, 0.571, 0.051 ] } }, { "index": 1980, "index_chain": 1980, "chain_name": "A", "nt_resnum": 2154, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2154", "linked_nts": [ "///A/2153", "///A/2155" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate", "alpha": -45.671, "beta": 116.534, "gamma": 71.972, "delta": 142.876, "epsilon": -89.447, "zeta": -35.987, "epsilon_zeta": -53.461, "bb_type": "--", "chi": -64.678, "glyco_bond": "--", "C5prime_xyz": [ -3.065, 6.616, -3.167 ], "P_xyz": [ -1.022, 5.253, -4.076 ], "form": ".", "ssZp": -0.330, "Dp": 1.057, "splay_angle": 53.834, "splay_distance": 8.636, "splay_ratio": 0.465, "d22": null, "d64": null, "eta": -142.525, "theta": -51.002, "eta_prime": -128.709, "theta_prime": -78.161, "eta_base": -109.783, "theta_base": -27.053, "v0": -18.938, "v1": 32.092, "v2": -32.427, "v3": 22.283, "v4": -2.304, "amplitude": 33.546, "phase_angle": 165.160, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 218.159, 258.368, 103.168 ], "x_axis": [ -0.224, 0.185, -0.957 ], "y_axis": [ -0.410, 0.873, 0.265 ], "z_axis": [ 0.884, 0.452, -0.119 ], "quaternion": [ 0.618, -0.076, 0.744, 0.241 ] } }, { "index": 1981, "index_chain": 1981, "chain_name": "A", "nt_resnum": 2155, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2155", "linked_nts": [ "///A/2154", "///A/2156" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-stack,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart", "alpha": -99.908, "beta": 74.946, "gamma": 164.001, "delta": 151.920, "epsilon": -49.804, "zeta": -153.190, "epsilon_zeta": 103.387, "bb_type": "--", "chi": -75.279, "glyco_bond": "--", "C5prime_xyz": [ -2.431, 6.994, -2.915 ], "P_xyz": [ -3.415, 5.575, -4.876 ], "form": ".", "ssZp": -0.799, "Dp": 0.709, "splay_angle": 118.742, "splay_distance": 17.372, "splay_ratio": 0.861, "d22": null, "d64": null, "eta": -114.102, "theta": -19.003, "eta_prime": -102.483, "theta_prime": 70.158, "eta_base": -96.536, "theta_base": 93.217, "v0": -13.306, "v1": 30.873, "v2": -35.688, "v3": 28.971, "v4": -10.087, "amplitude": 35.726, "phase_angle": 177.330, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.005, "origin": [ 211.139, 263.300, 104.144 ], "x_axis": [ -0.988, -0.053, 0.147 ], "y_axis": [ 0.050, 0.786, 0.616 ], "z_axis": [ -0.148, 0.616, -0.774 ], "quaternion": [ -0.078, -0.001, 0.942, 0.327 ] } }, { "index": 1982, "index_chain": 1982, "chain_name": "A", "nt_resnum": 2156, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2156", "linked_nts": [ "///A/2155", "///A/2157" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,internal-loop,phosphate,splayed-apart", "alpha": 148.466, "beta": 41.286, "gamma": -172.437, "delta": 81.702, "epsilon": -89.203, "zeta": -128.668, "epsilon_zeta": 39.465, "bb_type": "--", "chi": -158.858, "glyco_bond": "anti", "C5prime_xyz": [ -1.589, 8.839, 0.417 ], "P_xyz": [ -3.185, 9.877, -1.405 ], "form": ".", "ssZp": 3.762, "Dp": 4.532, "splay_angle": 25.788, "splay_distance": 4.396, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": -85.826, "theta": 160.848, "eta_prime": -168.228, "theta_prime": 174.822, "eta_base": -170.177, "theta_base": -151.208, "v0": -1.400, "v1": -20.335, "v2": 33.010, "v3": -34.743, "v4": 22.849, "amplitude": 35.319, "phase_angle": 20.832, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 227.734, 267.467, 107.148 ], "x_axis": [ 0.309, 0.622, -0.720 ], "y_axis": [ -0.888, 0.459, 0.014 ], "z_axis": [ 0.339, 0.635, 0.694 ], "quaternion": [ 0.785, -0.198, 0.337, 0.481 ] } }, { "index": 1983, "index_chain": 1983, "chain_name": "A", "nt_resnum": 2157, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2157", "linked_nts": [ "///A/2156", "///A/2158" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": 84.226, "beta": -97.649, "gamma": -164.704, "delta": 79.037, "epsilon": -112.500, "zeta": -59.316, "epsilon_zeta": -53.185, "bb_type": "--", "chi": -174.811, "glyco_bond": "anti", "C5prime_xyz": [ -1.236, 8.500, 1.388 ], "P_xyz": [ -0.521, 9.800, -0.768 ], "form": ".", "ssZp": 4.719, "Dp": 4.838, "splay_angle": 49.963, "splay_distance": 8.988, "splay_ratio": 0.441, "d22": 7.589, "d64": 9.683, "eta": 157.271, "theta": -105.784, "eta_prime": 176.505, "theta_prime": -120.021, "eta_base": -140.415, "theta_base": -125.127, "v0": 5.278, "v1": -28.107, "v2": 39.117, "v3": -37.045, "v4": 20.001, "amplitude": 39.866, "phase_angle": 11.119, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 229.574, 271.279, 108.333 ], "x_axis": [ -0.173, 0.664, -0.728 ], "y_axis": [ -0.912, 0.172, 0.373 ], "z_axis": [ 0.373, 0.728, 0.575 ], "quaternion": [ 0.627, -0.141, 0.439, 0.628 ] } }, { "index": 1984, "index_chain": 1984, "chain_name": "A", "nt_resnum": 2158, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2158", "linked_nts": [ "///A/2157", "///A/2159" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor", "alpha": 106.385, "beta": -137.910, "gamma": -46.951, "delta": 142.324, "epsilon": -115.816, "zeta": -78.593, "epsilon_zeta": -37.224, "bb_type": "--", "chi": -150.239, "glyco_bond": "anti", "C5prime_xyz": [ -2.054, 8.802, 0.341 ], "P_xyz": [ -2.526, 11.295, 1.045 ], "form": ".", "ssZp": 1.417, "Dp": 1.473, "splay_angle": 55.920, "splay_distance": 9.141, "splay_ratio": 0.469, "d22": 6.780, "d64": 6.967, "eta": -82.556, "theta": -92.471, "eta_prime": -56.440, "theta_prime": -80.358, "eta_base": -37.639, "theta_base": -31.645, "v0": -24.581, "v1": 36.602, "v2": -34.039, "v3": 20.646, "v4": 2.223, "amplitude": 36.765, "phase_angle": 157.797, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.003, "origin": [ 232.773, 279.677, 108.221 ], "x_axis": [ -0.297, 0.953, 0.061 ], "y_axis": [ -0.769, -0.277, 0.577 ], "z_axis": [ 0.566, 0.124, 0.815 ], "quaternion": [ 0.557, 0.203, 0.227, 0.773 ] } }, { "index": 1985, "index_chain": 1985, "chain_name": "A", "nt_resnum": 2159, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2159", "linked_nts": [ "///A/2158", "///A/2160" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor", "alpha": 91.856, "beta": -125.924, "gamma": -141.243, "delta": 139.592, "epsilon": -79.124, "zeta": -92.807, "epsilon_zeta": 13.683, "bb_type": "--", "chi": -112.413, "glyco_bond": "anti", "C5prime_xyz": [ -1.983, 8.330, -1.695 ], "P_xyz": [ -1.353, 8.537, -4.229 ], "form": ".", "ssZp": 0.202, "Dp": 0.778, "splay_angle": 48.084, "splay_distance": 7.773, "splay_ratio": 0.421, "d22": 5.249, "d64": 4.966, "eta": -146.287, "theta": -107.248, "eta_prime": -119.319, "theta_prime": -118.479, "eta_base": -78.179, "theta_base": -143.545, "v0": -20.217, "v1": 31.558, "v2": -30.356, "v3": 19.559, "v4": 0.201, "amplitude": 32.131, "phase_angle": 160.864, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 228.484, 280.848, 116.208 ], "x_axis": [ -0.907, -0.107, 0.407 ], "y_axis": [ 0.189, -0.968, 0.166 ], "z_axis": [ 0.376, 0.228, 0.898 ], "quaternion": [ -0.076, 0.202, 0.102, 0.971 ] } }, { "index": 1986, "index_chain": 1986, "chain_name": "A", "nt_resnum": 2160, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2160", "linked_nts": [ "///A/2159", "///A/2161" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor,phosphate,splayed-apart", "alpha": 89.324, "beta": -155.108, "gamma": 171.057, "delta": 143.554, "epsilon": -94.143, "zeta": 170.297, "epsilon_zeta": 95.560, "bb_type": "BII", "chi": -70.235, "glyco_bond": "--", "C5prime_xyz": [ -3.203, 6.888, -2.982 ], "P_xyz": [ -2.411, 5.769, -5.204 ], "form": ".", "ssZp": 0.227, "Dp": 0.942, "splay_angle": 85.692, "splay_distance": 13.390, "splay_ratio": 0.681, "d22": null, "d64": null, "eta": 114.348, "theta": 114.860, "eta_prime": 155.332, "theta_prime": 145.551, "eta_base": 147.040, "theta_base": 177.930, "v0": -22.143, "v1": 34.674, "v2": -33.395, "v3": 21.486, "v4": 0.226, "amplitude": 35.337, "phase_angle": 160.916, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 234.147, 278.904, 121.165 ], "x_axis": [ -0.965, 0.258, -0.042 ], "y_axis": [ -0.252, -0.962, -0.106 ], "z_axis": [ -0.068, -0.092, 0.993 ], "quaternion": [ 0.129, -0.028, -0.050, 0.990 ] } }, { "index": 1987, "index_chain": 1987, "chain_name": "A", "nt_resnum": 2161, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2161", "linked_nts": [ "///A/2160", "///A/2162" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart", "alpha": 153.129, "beta": 156.049, "gamma": -153.016, "delta": 139.018, "epsilon": -149.445, "zeta": 62.650, "epsilon_zeta": 147.905, "bb_type": "--", "chi": -52.423, "glyco_bond": "--", "C5prime_xyz": [ -3.735, 6.198, -3.122 ], "P_xyz": [ -5.132, 5.725, -5.302 ], "form": ".", "ssZp": 0.496, "Dp": 2.101, "splay_angle": 78.311, "splay_distance": 11.244, "splay_ratio": 0.649, "d22": null, "d64": null, "eta": -96.896, "theta": -30.791, "eta_prime": -136.271, "theta_prime": -5.328, "eta_base": -134.322, "theta_base": 49.253, "v0": -23.685, "v1": 34.408, "v2": -31.545, "v3": 18.713, "v4": 2.932, "amplitude": 34.411, "phase_angle": 156.451, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 238.573, 269.814, 129.944 ], "x_axis": [ -0.283, -0.708, 0.647 ], "y_axis": [ 0.358, -0.704, -0.613 ], "z_axis": [ 0.890, 0.059, 0.453 ], "quaternion": [ -0.341, 0.492, -0.178, 0.781 ] } }, { "index": 1988, "index_chain": 1988, "chain_name": "A", "nt_resnum": 2162, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2162", "linked_nts": [ "///A/2161", "///A/2163" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate", "alpha": -95.531, "beta": 118.286, "gamma": 124.136, "delta": 156.422, "epsilon": -164.646, "zeta": -132.810, "epsilon_zeta": -31.835, "bb_type": "--", "chi": -44.907, "glyco_bond": "--", "C5prime_xyz": [ -4.188, 5.880, -2.854 ], "P_xyz": [ -4.043, 3.683, -4.316 ], "form": ".", "ssZp": 1.546, "Dp": 2.114, "splay_angle": 56.242, "splay_distance": 9.558, "splay_ratio": 0.473, "d22": null, "d64": null, "eta": -168.598, "theta": -113.410, "eta_prime": -90.105, "theta_prime": -168.673, "eta_base": -97.943, "theta_base": -133.761, "v0": -24.511, "v1": 42.271, "v2": -42.612, "v3": 29.560, "v4": -3.449, "amplitude": 44.003, "phase_angle": 165.559, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.018, "frame": { "rmsd": 0.018, "origin": [ 241.709, 272.643, 119.523 ], "x_axis": [ 0.388, 0.494, -0.778 ], "y_axis": [ -0.130, -0.807, -0.576 ], "z_axis": [ -0.913, 0.325, -0.248 ], "quaternion": [ -0.288, 0.781, 0.116, -0.541 ] } }, { "index": 1989, "index_chain": 1989, "chain_name": "A", "nt_resnum": 2163, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2163", "linked_nts": [ "///A/2162", "///A/2164" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": 65.251, "beta": 101.943, "gamma": -109.289, "delta": 77.956, "epsilon": -157.138, "zeta": -79.301, "epsilon_zeta": -77.837, "bb_type": "BI", "chi": 161.635, "glyco_bond": "anti", "C5prime_xyz": [ -1.722, 7.821, 2.558 ], "P_xyz": [ -2.846, 8.962, 4.669 ], "form": ".", "ssZp": 4.285, "Dp": 4.632, "splay_angle": 46.023, "splay_distance": 5.903, "splay_ratio": 0.391, "d22": null, "d64": null, "eta": 77.031, "theta": 137.914, "eta_prime": 81.556, "theta_prime": 173.717, "eta_base": 128.079, "theta_base": -127.489, "v0": 5.459, "v1": -28.510, "v2": 39.686, "v3": -37.467, "v4": 20.096, "amplitude": 40.420, "phase_angle": 10.933, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.045, "frame": { "rmsd": 0.011, "origin": [ 239.221, 271.326, 110.389 ], "x_axis": [ 0.194, 0.848, 0.494 ], "y_axis": [ -0.557, -0.319, 0.767 ], "z_axis": [ 0.807, -0.424, 0.411 ], "quaternion": [ 0.567, 0.525, 0.138, 0.619 ] } }, { "index": 1990, "index_chain": 1990, "chain_name": "A", "nt_resnum": 2164, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2164", "linked_nts": [ "///A/2163", "///A/2165" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate", "alpha": -80.399, "beta": -134.702, "gamma": 65.434, "delta": 93.586, "epsilon": -98.891, "zeta": -63.020, "epsilon_zeta": -35.871, "bb_type": "--", "chi": 172.157, "glyco_bond": "--", "C5prime_xyz": [ -1.266, 7.870, 2.159 ], "P_xyz": [ 0.628, 6.730, 3.570 ], "form": ".", "ssZp": 4.580, "Dp": 4.638, "splay_angle": 23.973, "splay_distance": 3.805, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": -139.677, "theta": -90.118, "eta_prime": -150.732, "theta_prime": -97.672, "eta_base": -141.890, "theta_base": -59.905, "v0": 9.010, "v1": -25.170, "v2": 30.780, "v3": -26.547, "v4": 11.161, "amplitude": 30.801, "phase_angle": 2.133, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.617, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 244.703, 269.138, 110.466 ], "x_axis": [ -0.396, 0.711, 0.581 ], "y_axis": [ -0.884, -0.466, -0.033 ], "z_axis": [ 0.248, -0.526, 0.813 ], "quaternion": [ 0.488, 0.253, -0.171, 0.818 ] } }, { "index": 1991, "index_chain": 1991, "chain_name": "A", "nt_resnum": 2165, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2165", "linked_nts": [ "///A/2164", "///A/2166" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor,phosphate", "alpha": -103.258, "beta": 121.771, "gamma": 103.571, "delta": 80.940, "epsilon": -156.883, "zeta": -33.489, "epsilon_zeta": -123.394, "bb_type": "BI", "chi": 165.520, "glyco_bond": "anti", "C5prime_xyz": [ -1.702, 7.940, 2.384 ], "P_xyz": [ 0.383, 9.155, 1.369 ], "form": ".", "ssZp": 4.347, "Dp": 4.631, "splay_angle": 51.329, "splay_distance": 6.993, "splay_ratio": 0.434, "d22": null, "d64": null, "eta": 129.930, "theta": -86.183, "eta_prime": 169.527, "theta_prime": -97.875, "eta_base": -112.914, "theta_base": -30.129, "v0": 5.374, "v1": -27.689, "v2": 38.253, "v3": -36.131, "v4": 19.392, "amplitude": 38.942, "phase_angle": 10.801, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 244.890, 269.009, 114.264 ], "x_axis": [ -0.924, 0.237, 0.300 ], "y_axis": [ -0.352, -0.834, -0.425 ], "z_axis": [ 0.149, -0.498, 0.854 ], "quaternion": [ 0.155, 0.118, -0.243, 0.950 ] } }, { "index": 1992, "index_chain": 1992, "chain_name": "A", "nt_resnum": 2166, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2166", "linked_nts": [ "///A/2165", "///A/2167" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,internal-loop,cap-donor", "alpha": -170.354, "beta": -132.407, "gamma": 99.288, "delta": 86.590, "epsilon": -74.405, "zeta": -161.720, "epsilon_zeta": 87.316, "bb_type": "BII", "chi": -132.928, "glyco_bond": "anti", "C5prime_xyz": [ -1.314, 8.595, -1.082 ], "P_xyz": [ 1.179, 8.056, -1.711 ], "form": ".", "ssZp": 2.053, "Dp": 4.489, "splay_angle": 42.839, "splay_distance": 7.093, "splay_ratio": 0.374, "d22": 4.342, "d64": 3.588, "eta": 159.520, "theta": -116.411, "eta_prime": -161.335, "theta_prime": -122.954, "eta_base": -65.806, "theta_base": -104.600, "v0": 3.124, "v1": -23.191, "v2": 33.245, "v3": -32.335, "v4": 18.473, "amplitude": 34.185, "phase_angle": 13.462, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 239.864, 264.198, 114.965 ], "x_axis": [ -0.152, -0.976, -0.153 ], "y_axis": [ 0.966, -0.180, 0.188 ], "z_axis": [ -0.211, -0.119, 0.970 ], "quaternion": [ 0.640, 0.120, -0.023, -0.759 ] } }, { "index": 1993, "index_chain": 1993, "chain_name": "A", "nt_resnum": 2167, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2167", "linked_nts": [ "///A/2166", "///A/2168" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": 116.323, "beta": -112.256, "gamma": 157.388, "delta": 83.420, "epsilon": -162.524, "zeta": -68.762, "epsilon_zeta": -93.762, "bb_type": "BI", "chi": -177.279, "glyco_bond": "anti", "C5prime_xyz": [ -1.081, 8.371, 1.557 ], "P_xyz": [ 0.975, 8.581, -0.062 ], "form": ".", "ssZp": 4.540, "Dp": 4.568, "splay_angle": 50.666, "splay_distance": 8.434, "splay_ratio": 0.443, "d22": null, "d64": null, "eta": 124.879, "theta": -158.997, "eta_prime": 160.015, "theta_prime": 169.100, "eta_base": -166.408, "theta_base": 134.596, "v0": 6.928, "v1": -27.716, "v2": 36.813, "v3": -33.835, "v4": 16.981, "amplitude": 37.186, "phase_angle": 8.123, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.068, "frame": { "rmsd": 0.007, "origin": [ 241.699, 260.169, 120.507 ], "x_axis": [ 0.132, -0.343, -0.930 ], "y_axis": [ 0.874, 0.482, -0.054 ], "z_axis": [ 0.467, -0.806, 0.364 ], "quaternion": [ 0.703, 0.267, 0.497, -0.433 ] } }, { "index": 1994, "index_chain": 1994, "chain_name": "A", "nt_resnum": 2168, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2168", "linked_nts": [ "///A/2167", "///A/2169" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": -108.823, "beta": 117.225, "gamma": 155.063, "delta": 81.270, "epsilon": -150.809, "zeta": -4.734, "epsilon_zeta": -146.075, "bb_type": "--", "chi": -175.805, "glyco_bond": "anti", "C5prime_xyz": [ -1.560, 8.493, 1.446 ], "P_xyz": [ -1.205, 10.654, 0.003 ], "form": ".", "ssZp": 4.617, "Dp": 4.627, "splay_angle": 29.240, "splay_distance": 5.295, "splay_ratio": 0.277, "d22": null, "d64": null, "eta": -152.556, "theta": -113.129, "eta_prime": -164.286, "theta_prime": -125.048, "eta_base": 171.906, "theta_base": -70.163, "v0": 3.312, "v1": -25.217, "v2": 36.292, "v3": -35.423, "v4": 20.229, "amplitude": 37.347, "phase_angle": 13.648, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.396, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 238.319, 262.018, 128.009 ], "x_axis": [ -0.344, -0.847, -0.406 ], "y_axis": [ 0.923, -0.226, -0.311 ], "z_axis": [ 0.171, -0.482, 0.859 ], "quaternion": [ 0.568, 0.075, 0.254, -0.779 ] } }, { "index": 1995, "index_chain": 1995, "chain_name": "A", "nt_resnum": 2169, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2169", "linked_nts": [ "///A/2168", "///A/2170" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 148.269, "beta": 145.246, "gamma": 159.237, "delta": 80.789, "epsilon": -116.568, "zeta": -66.242, "epsilon_zeta": -50.326, "bb_type": "--", "chi": -158.039, "glyco_bond": "anti", "C5prime_xyz": [ -1.297, 8.734, 0.375 ], "P_xyz": [ -0.718, 10.562, -1.415 ], "form": ".", "ssZp": 4.174, "Dp": 4.787, "splay_angle": 21.977, "splay_distance": 3.709, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 123.016, "theta": -176.802, "eta_prime": 155.382, "theta_prime": 176.201, "eta_base": -124.046, "theta_base": 164.029, "v0": 3.775, "v1": -25.929, "v2": 36.978, "v3": -35.826, "v4": 20.213, "amplitude": 37.955, "phase_angle": 13.029, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 237.656, 257.024, 126.379 ], "x_axis": [ 0.568, -0.395, -0.722 ], "y_axis": [ 0.823, 0.269, 0.501 ], "z_axis": [ -0.004, -0.878, 0.478 ], "quaternion": [ 0.761, 0.453, 0.236, -0.400 ] } }, { "index": 1996, "index_chain": 1996, "chain_name": "A", "nt_resnum": 2170, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2170", "linked_nts": [ "///A/2169", "///A/2171" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop", "alpha": -108.871, "beta": 95.647, "gamma": 132.558, "delta": 82.951, "epsilon": -133.786, "zeta": -114.244, "epsilon_zeta": -19.541, "bb_type": "--", "chi": 177.637, "glyco_bond": "anti", "C5prime_xyz": [ -1.628, 8.331, 1.788 ], "P_xyz": [ -0.694, 9.883, -0.104 ], "form": ".", "ssZp": 4.623, "Dp": 4.668, "splay_angle": 24.578, "splay_distance": 3.660, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 160.552, "theta": -169.195, "eta_prime": 166.676, "theta_prime": -159.378, "eta_base": 162.824, "theta_base": -97.033, "v0": 2.339, "v1": -23.939, "v2": 35.135, "v3": -34.796, "v4": 20.488, "amplitude": 36.377, "phase_angle": 15.016, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 235.188, 254.801, 128.029 ], "x_axis": [ 0.547, -0.021, -0.837 ], "y_axis": [ 0.830, 0.145, 0.538 ], "z_axis": [ 0.110, -0.989, 0.097 ], "quaternion": [ 0.669, 0.571, 0.354, -0.318 ] } }, { "index": 1997, "index_chain": 1997, "chain_name": "A", "nt_resnum": 2171, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2171", "linked_nts": [ "///A/2170", "///A/2172" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,internal-loop,cap-acceptor", "alpha": 23.284, "beta": 112.068, "gamma": 6.453, "delta": 80.788, "epsilon": -115.704, "zeta": -9.761, "epsilon_zeta": -105.943, "bb_type": "--", "chi": -154.773, "glyco_bond": "anti", "C5prime_xyz": [ -1.464, 8.781, 0.222 ], "P_xyz": [ 0.967, 8.473, 1.180 ], "form": ".", "ssZp": 4.031, "Dp": 4.741, "splay_angle": 22.907, "splay_distance": 4.401, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 172.809, "theta": -79.355, "eta_prime": -171.981, "theta_prime": -90.577, "eta_base": -102.181, "theta_base": -89.386, "v0": 1.932, "v1": -24.032, "v2": 35.809, "v3": -35.681, "v4": 21.262, "amplitude": 37.196, "phase_angle": 15.700, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 237.157, 252.082, 126.572 ], "x_axis": [ 0.988, 0.147, -0.047 ], "y_axis": [ 0.045, 0.016, 0.999 ], "z_axis": [ 0.148, -0.989, 0.010 ], "quaternion": [ 0.710, 0.700, 0.069, 0.036 ] } }, { "index": 1998, "index_chain": 1998, "chain_name": "A", "nt_resnum": 2172, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2172", "linked_nts": [ "///A/2171", "///A/2173" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,A-minor,cap-donor", "alpha": -105.950, "beta": 74.809, "gamma": -163.954, "delta": 79.296, "epsilon": -141.497, "zeta": -77.225, "epsilon_zeta": -64.272, "bb_type": "BI", "chi": -172.623, "glyco_bond": "anti", "C5prime_xyz": [ -1.656, 8.694, 1.195 ], "P_xyz": [ -3.130, 10.669, 0.306 ], "form": ".", "ssZp": 4.579, "Dp": 4.633, "splay_angle": 24.916, "splay_distance": 3.768, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": -155.694, "theta": 140.595, "eta_prime": -149.456, "theta_prime": 170.448, "eta_base": -126.019, "theta_base": -116.941, "v0": 0.031, "v1": -23.407, "v2": 36.500, "v3": -37.517, "v4": 23.701, "amplitude": 38.509, "phase_angle": 18.588, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.005, "origin": [ 240.520, 249.699, 125.027 ], "x_axis": [ 0.980, 0.104, 0.169 ], "y_axis": [ -0.157, -0.111, 0.981 ], "z_axis": [ 0.121, -0.988, -0.093 ], "quaternion": [ 0.666, 0.739, -0.018, 0.098 ] } }, { "index": 1999, "index_chain": 1999, "chain_name": "A", "nt_resnum": 2173, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2173", "linked_nts": [ "///A/2172", "///A/2174" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-donor,cap-acceptor,splayed-apart", "alpha": -50.723, "beta": 156.162, "gamma": 51.053, "delta": 88.521, "epsilon": -105.524, "zeta": -98.360, "epsilon_zeta": -7.164, "bb_type": "--", "chi": -160.109, "glyco_bond": "anti", "C5prime_xyz": [ -1.125, 8.642, 0.603 ], "P_xyz": [ 1.499, 8.500, 0.629 ], "form": ".", "ssZp": 4.089, "Dp": 4.644, "splay_angle": 129.102, "splay_distance": 14.472, "splay_ratio": 0.907, "d22": null, "d64": null, "eta": 179.519, "theta": -161.189, "eta_prime": -162.632, "theta_prime": 155.602, "eta_base": -90.010, "theta_base": 72.186, "v0": 4.427, "v1": -22.798, "v2": 31.500, "v3": -29.827, "v4": 16.109, "amplitude": 32.081, "phase_angle": 10.925, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.660, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 243.165, 247.117, 125.753 ], "x_axis": [ 0.477, -0.130, 0.869 ], "y_axis": [ -0.862, -0.264, 0.433 ], "z_axis": [ 0.173, -0.956, -0.238 ], "quaternion": [ 0.493, 0.703, -0.353, 0.371 ] } }, { "index": 2000, "index_chain": 2000, "chain_name": "A", "nt_resnum": 2174, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2174", "linked_nts": [ "///A/2173", "///A/2175" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -103.830, "beta": 76.787, "gamma": 25.402, "delta": 82.343, "epsilon": -77.459, "zeta": -136.904, "epsilon_zeta": 59.446, "bb_type": "--", "chi": -59.007, "glyco_bond": "--", "C5prime_xyz": [ -3.598, 5.886, -3.386 ], "P_xyz": [ -1.241, 4.809, -3.906 ], "form": ".", "ssZp": -3.274, "Dp": 4.498, "splay_angle": 73.704, "splay_distance": 10.501, "splay_ratio": 0.618, "d22": 8.986, "d64": 9.955, "eta": 70.605, "theta": -31.030, "eta_prime": 70.916, "theta_prime": -25.290, "eta_base": 72.464, "theta_base": 15.120, "v0": -0.016, "v1": -21.519, "v2": 33.478, "v3": -34.387, "v4": 21.798, "amplitude": 35.324, "phase_angle": 18.604, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.007, "origin": [ 229.321, 242.923, 126.190 ], "x_axis": [ 0.034, 0.886, 0.462 ], "y_axis": [ 0.831, 0.232, -0.505 ], "z_axis": [ -0.555, 0.402, -0.729 ], "quaternion": [ -0.367, 0.619, 0.694, -0.037 ] } }, { "index": 2001, "index_chain": 2001, "chain_name": "A", "nt_resnum": 2175, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2175", "linked_nts": [ "///A/2174", "///A/2176" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,hairpin-loop,cap-donor", "alpha": 91.569, "beta": 90.971, "gamma": 36.522, "delta": 84.845, "epsilon": -95.018, "zeta": 100.304, "epsilon_zeta": 164.678, "bb_type": "--", "chi": -96.285, "glyco_bond": "anti", "C5prime_xyz": [ -2.157, 7.524, -2.834 ], "P_xyz": [ 0.041, 6.130, -3.184 ], "form": ".", "ssZp": -0.477, "Dp": 4.643, "splay_angle": 73.234, "splay_distance": 11.827, "splay_ratio": 0.598, "d22": null, "d64": null, "eta": -160.209, "theta": 63.605, "eta_prime": -144.245, "theta_prime": 31.661, "eta_base": -150.369, "theta_base": 38.287, "v0": 4.278, "v1": -24.033, "v2": 33.604, "v3": -32.079, "v4": 17.618, "amplitude": 34.315, "phase_angle": 11.683, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.006, "origin": [ 238.237, 237.960, 128.670 ], "x_axis": [ -0.121, -0.843, -0.524 ], "y_axis": [ 0.517, 0.398, -0.758 ], "z_axis": [ 0.848, -0.363, 0.387 ], "quaternion": [ 0.645, -0.153, 0.532, -0.527 ] } }, { "index": 2002, "index_chain": 2002, "chain_name": "A", "nt_resnum": 2176, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2176", "linked_nts": [ "///A/2175", "///A/2177" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-acceptor", "alpha": 172.790, "beta": 94.239, "gamma": 126.398, "delta": 82.494, "epsilon": -121.105, "zeta": -43.990, "epsilon_zeta": -77.114, "bb_type": "--", "chi": -155.677, "glyco_bond": "anti", "C5prime_xyz": [ -1.054, 8.607, 0.251 ], "P_xyz": [ -0.755, 9.153, -2.286 ], "form": ".", "ssZp": 4.133, "Dp": 4.800, "splay_angle": 43.546, "splay_distance": 6.899, "splay_ratio": 0.371, "d22": null, "d64": null, "eta": 122.751, "theta": -125.468, "eta_prime": 154.890, "theta_prime": -118.723, "eta_base": -164.284, "theta_base": -69.592, "v0": 5.905, "v1": -27.019, "v2": 36.829, "v3": -34.403, "v4": 17.996, "amplitude": 37.369, "phase_angle": 9.749, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 234.774, 247.402, 122.446 ], "x_axis": [ 0.306, 0.669, 0.677 ], "y_axis": [ 0.952, -0.206, -0.226 ], "z_axis": [ -0.012, 0.714, -0.700 ], "quaternion": [ -0.316, 0.744, 0.545, 0.224 ] } }, { "index": 2003, "index_chain": 2003, "chain_name": "A", "nt_resnum": 2177, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2177", "linked_nts": [ "///A/2176", "///A/2178" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,A-minor,cap-donor", "alpha": -67.187, "beta": 158.388, "gamma": 72.919, "delta": 77.827, "epsilon": 159.431, "zeta": -82.035, "epsilon_zeta": -118.534, "bb_type": "BI", "chi": -144.431, "glyco_bond": "anti", "C5prime_xyz": [ -1.716, 8.850, -0.441 ], "P_xyz": [ 0.610, 9.296, -1.557 ], "form": ".", "ssZp": 3.839, "Dp": 4.108, "splay_angle": 28.042, "splay_distance": 4.776, "splay_ratio": 0.248, "d22": null, "d64": null, "eta": 158.544, "theta": -161.651, "eta_prime": -150.031, "theta_prime": 176.778, "eta_base": -70.609, "theta_base": 169.365, "v0": -0.667, "v1": -22.818, "v2": 36.342, "v3": -37.708, "v4": 24.219, "amplitude": 38.572, "phase_angle": 19.576, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.168, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 240.193, 250.602, 125.273 ], "x_axis": [ 0.995, 0.055, 0.082 ], "y_axis": [ 0.091, -0.176, -0.980 ], "z_axis": [ -0.040, 0.983, -0.180 ], "quaternion": [ 0.640, -0.767, -0.048, -0.014 ] } }, { "index": 2004, "index_chain": 2004, "chain_name": "A", "nt_resnum": 2178, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2178", "linked_nts": [ "///A/2177", "///A/2179" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,internal-loop", "alpha": 152.122, "beta": -153.446, "gamma": -178.397, "delta": 83.431, "epsilon": -131.020, "zeta": -95.230, "epsilon_zeta": -35.790, "bb_type": "--", "chi": -176.959, "glyco_bond": "anti", "C5prime_xyz": [ -1.288, 8.447, 1.534 ], "P_xyz": [ 0.352, 10.140, 0.377 ], "form": "A", "ssZp": 4.663, "Dp": 4.699, "splay_angle": 25.209, "splay_distance": 3.832, "splay_ratio": 0.218, "d22": 4.597, "d64": 4.320, "eta": 179.560, "theta": -175.491, "eta_prime": 178.402, "theta_prime": -168.574, "eta_base": -174.352, "theta_base": -139.963, "v0": 4.499, "v1": -25.449, "v2": 35.546, "v3": -33.964, "v4": 18.587, "amplitude": 36.297, "phase_angle": 11.673, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.292, "filter_rmsd": 0.064, "frame": { "rmsd": 0.006, "origin": [ 236.861, 253.548, 127.014 ], "x_axis": [ 0.964, 0.268, -0.005 ], "y_axis": [ 0.026, -0.113, -0.993 ], "z_axis": [ -0.266, 0.957, -0.116 ], "quaternion": [ 0.658, -0.740, -0.099, 0.092 ] } }, { "index": 2005, "index_chain": 2005, "chain_name": "A", "nt_resnum": 2179, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2179", "linked_nts": [ "///A/2178", "///A/2180" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -49.267, "beta": 159.301, "gamma": 49.235, "delta": 84.903, "epsilon": 171.969, "zeta": 66.499, "epsilon_zeta": 105.470, "bb_type": "--", "chi": -169.579, "glyco_bond": "anti", "C5prime_xyz": [ -1.246, 8.561, 1.126 ], "P_xyz": [ 1.326, 8.547, 1.611 ], "form": ".", "ssZp": 4.109, "Dp": 4.178, "splay_angle": 13.442, "splay_distance": 2.079, "splay_ratio": 0.122, "d22": 4.938, "d64": 3.068, "eta": 168.395, "theta": -58.790, "eta_prime": -173.855, "theta_prime": -93.589, "eta_base": -135.447, "theta_base": -27.695, "v0": 2.267, "v1": -22.050, "v2": 32.194, "v3": -31.878, "v4": 18.753, "amplitude": 33.310, "phase_angle": 14.873, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.449, "filter_rmsd": 0.106, "frame": { "rmsd": 0.007, "origin": [ 235.997, 257.153, 127.980 ], "x_axis": [ 0.851, 0.001, -0.526 ], "y_axis": [ -0.505, -0.274, -0.818 ], "z_axis": [ -0.145, 0.962, -0.232 ], "quaternion": [ 0.580, -0.768, 0.164, 0.218 ] } }, { "index": 2006, "index_chain": 2006, "chain_name": "A", "nt_resnum": 2180, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2180", "linked_nts": [ "///A/2179", "///A/2181" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,internal-loop,phosphate", "alpha": 172.647, "beta": 77.471, "gamma": 146.912, "delta": 151.077, "epsilon": -129.641, "zeta": -113.495, "epsilon_zeta": -16.147, "bb_type": "--", "chi": -93.302, "glyco_bond": "anti", "C5prime_xyz": [ -2.116, 7.725, -2.361 ], "P_xyz": [ -2.417, 6.352, -4.571 ], "form": ".", "ssZp": 1.148, "Dp": 1.532, "splay_angle": 30.773, "splay_distance": 5.285, "splay_ratio": 0.267, "d22": 5.644, "d64": 4.840, "eta": -159.878, "theta": 136.085, "eta_prime": -155.499, "theta_prime": 159.609, "eta_base": -74.016, "theta_base": -176.818, "v0": -16.633, "v1": 32.686, "v2": -35.297, "v3": 26.657, "v4": -6.484, "amplitude": 35.686, "phase_angle": 171.530, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.005, "origin": [ 236.197, 257.484, 125.938 ], "x_axis": [ 0.493, -0.144, -0.858 ], "y_axis": [ -0.540, 0.722, -0.431 ], "z_axis": [ 0.682, 0.676, 0.278 ], "quaternion": [ 0.790, -0.351, 0.488, 0.126 ] } }, { "index": 2007, "index_chain": 2007, "chain_name": "A", "nt_resnum": 2181, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2181", "linked_nts": [ "///A/2180", "///A/2182" ], "nt_type": "RNA", "dbn": ")", "summary": "turn,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": -99.209, "beta": 167.483, "gamma": 7.386, "delta": 84.066, "epsilon": -135.228, "zeta": -118.651, "epsilon_zeta": -16.577, "bb_type": "--", "chi": -166.180, "glyco_bond": "anti", "C5prime_xyz": [ -1.216, 8.670, 0.910 ], "P_xyz": [ 0.887, 9.216, 2.379 ], "form": ".", "ssZp": 4.475, "Dp": 4.641, "splay_angle": 20.326, "splay_distance": 3.203, "splay_ratio": 0.176, "d22": null, "d64": null, "eta": 105.216, "theta": -142.888, "eta_prime": 113.262, "theta_prime": -122.738, "eta_base": 146.261, "theta_base": -88.930, "v0": 2.200, "v1": -22.774, "v2": 33.485, "v3": -33.182, "v4": 19.567, "amplitude": 34.679, "phase_angle": 15.083, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 238.453, 261.660, 128.264 ], "x_axis": [ -0.380, -0.818, -0.431 ], "y_axis": [ -0.924, 0.355, 0.140 ], "z_axis": [ 0.038, 0.452, -0.891 ], "quaternion": [ 0.145, -0.538, 0.810, 0.183 ] } }, { "index": 2008, "index_chain": 2008, "chain_name": "A", "nt_resnum": 2182, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2182", "linked_nts": [ "///A/2181", "///A/2183" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,cap-donor", "alpha": 35.168, "beta": 116.882, "gamma": 8.679, "delta": 148.272, "epsilon": -83.117, "zeta": -147.865, "epsilon_zeta": 64.748, "bb_type": "--", "chi": -113.881, "glyco_bond": "anti", "C5prime_xyz": [ -2.119, 8.472, -1.424 ], "P_xyz": [ 0.062, 9.056, -0.068 ], "form": ".", "ssZp": 0.667, "Dp": 0.593, "splay_angle": 66.631, "splay_distance": 9.582, "splay_ratio": 0.581, "d22": null, "d64": null, "eta": -169.990, "theta": 113.259, "eta_prime": -138.449, "theta_prime": 140.121, "eta_base": -108.087, "theta_base": 149.321, "v0": -22.580, "v1": 37.918, "v2": -37.744, "v3": 25.544, "v4": -2.096, "amplitude": 39.225, "phase_angle": 164.206, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 238.237, 261.527, 125.070 ], "x_axis": [ -0.759, -0.593, 0.269 ], "y_axis": [ -0.572, 0.804, 0.162 ], "z_axis": [ -0.312, -0.031, -0.950 ], "quaternion": [ -0.155, -0.311, 0.937, 0.035 ] } }, { "index": 2009, "index_chain": 2009, "chain_name": "A", "nt_resnum": 2183, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2183", "linked_nts": [ "///A/2182", "///A/2184" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-stack,non-canonical,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate", "alpha": 141.500, "beta": 89.417, "gamma": 77.763, "delta": 81.949, "epsilon": 154.848, "zeta": 45.847, "epsilon_zeta": 109.000, "bb_type": "--", "chi": 83.646, "glyco_bond": "syn", "C5prime_xyz": [ -4.475, 4.914, 2.831 ], "P_xyz": [ -2.168, 4.446, 4.011 ], "form": ".", "ssZp": -1.564, "Dp": 3.955, "splay_angle": 70.990, "splay_distance": 9.862, "splay_ratio": 0.582, "d22": null, "d64": null, "eta": 117.474, "theta": -42.656, "eta_prime": 108.096, "theta_prime": -87.909, "eta_base": 138.867, "theta_base": -105.828, "v0": 1.453, "v1": -22.211, "v2": 33.197, "v3": -33.339, "v4": 20.155, "amplitude": 34.583, "phase_angle": 16.276, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.017, "frame": { "rmsd": 0.017, "origin": [ 243.751, 269.363, 125.057 ], "x_axis": [ 0.141, -0.213, 0.967 ], "y_axis": [ -0.473, 0.844, 0.255 ], "z_axis": [ -0.870, -0.493, 0.018 ], "quaternion": [ 0.708, 0.264, -0.649, 0.092 ] } }, { "index": 2010, "index_chain": 2010, "chain_name": "A", "nt_resnum": 2184, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2184", "linked_nts": [ "///A/2183", "///A/2185" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": -140.596, "beta": -109.049, "gamma": 52.163, "delta": 142.059, "epsilon": -160.613, "zeta": -90.957, "epsilon_zeta": -69.656, "bb_type": "BI", "chi": -176.524, "glyco_bond": "anti", "C5prime_xyz": [ -2.102, 8.367, 1.697 ], "P_xyz": [ -2.039, 7.630, 4.210 ], "form": ".", "ssZp": 1.177, "Dp": 2.155, "splay_angle": 36.390, "splay_distance": 5.852, "splay_ratio": 0.314, "d22": null, "d64": null, "eta": 176.047, "theta": -82.955, "eta_prime": -144.780, "theta_prime": -101.096, "eta_base": -123.472, "theta_base": -48.279, "v0": -21.698, "v1": 33.982, "v2": -32.539, "v3": 20.765, "v4": 0.385, "amplitude": 34.502, "phase_angle": 160.583, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 243.749, 267.689, 115.338 ], "x_axis": [ -0.387, -0.710, 0.589 ], "y_axis": [ 0.182, 0.567, 0.803 ], "z_axis": [ -0.904, 0.418, -0.090 ], "quaternion": [ 0.522, 0.185, -0.715, -0.427 ] } }, { "index": 2011, "index_chain": 2011, "chain_name": "A", "nt_resnum": 2185, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2185", "linked_nts": [ "///A/2184", "///A/2186" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor", "alpha": 149.947, "beta": -159.607, "gamma": 157.202, "delta": 81.387, "epsilon": -145.065, "zeta": -14.898, "epsilon_zeta": -130.167, "bb_type": "--", "chi": -154.521, "glyco_bond": "anti", "C5prime_xyz": [ -0.920, 8.659, 0.175 ], "P_xyz": [ 0.696, 9.432, -1.750 ], "form": ".", "ssZp": 4.277, "Dp": 4.720, "splay_angle": 43.055, "splay_distance": 7.257, "splay_ratio": 0.375, "d22": null, "d64": null, "eta": 134.772, "theta": -79.894, "eta_prime": 173.277, "theta_prime": -94.515, "eta_base": -103.111, "theta_base": -53.218, "v0": 6.902, "v1": -28.072, "v2": 37.530, "v3": -34.532, "v4": 17.449, "amplitude": 37.935, "phase_angle": 8.376, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 238.667, 270.589, 115.215 ], "x_axis": [ -0.468, 0.632, 0.618 ], "y_axis": [ 0.765, 0.640, -0.076 ], "z_axis": [ -0.443, 0.437, -0.783 ], "quaternion": [ -0.312, 0.411, 0.850, 0.106 ] } }, { "index": 2012, "index_chain": 2012, "chain_name": "A", "nt_resnum": 2186, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2186", "linked_nts": [ "///A/2185", "///A/2187" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-stack,non-canonical,non-pair-contact,helix-end,internal-loop,cap-donor", "alpha": 148.579, "beta": 171.204, "gamma": 165.197, "delta": 79.322, "epsilon": -134.788, "zeta": 167.081, "epsilon_zeta": 58.132, "bb_type": "BII", "chi": -167.514, "glyco_bond": "anti", "C5prime_xyz": [ -1.163, 8.571, 0.959 ], "P_xyz": [ 0.006, 10.461, -0.427 ], "form": ".", "ssZp": 4.623, "Dp": 4.781, "splay_angle": 46.544, "splay_distance": 6.201, "splay_ratio": 0.431, "d22": null, "d64": null, "eta": 135.125, "theta": 93.280, "eta_prime": 175.031, "theta_prime": 117.371, "eta_base": -104.735, "theta_base": 135.347, "v0": 7.086, "v1": -29.868, "v2": 40.121, "v3": -37.069, "v4": 18.879, "amplitude": 40.593, "phase_angle": 8.745, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 238.428, 276.605, 119.266 ], "x_axis": [ 0.744, 0.553, 0.376 ], "y_axis": [ 0.461, -0.017, -0.887 ], "z_axis": [ -0.484, 0.833, -0.267 ], "quaternion": [ 0.604, -0.712, -0.356, 0.038 ] } }, { "index": 2013, "index_chain": 2013, "chain_name": "A", "nt_resnum": 2187, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2187", "linked_nts": [ "///A/2186", "///A/2188" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor,cap-acceptor,phosphate", "alpha": -29.399, "beta": 99.928, "gamma": 88.944, "delta": 152.999, "epsilon": -79.061, "zeta": 58.986, "epsilon_zeta": 221.953, "bb_type": "--", "chi": -61.631, "glyco_bond": "--", "C5prime_xyz": [ -2.890, 6.311, -3.178 ], "P_xyz": [ -1.252, 4.332, -3.700 ], "form": ".", "ssZp": -0.544, "Dp": 0.619, "splay_angle": 36.467, "splay_distance": 5.970, "splay_ratio": 0.321, "d22": null, "d64": null, "eta": -75.686, "theta": 74.601, "eta_prime": -97.858, "theta_prime": 73.713, "eta_base": -147.359, "theta_base": 159.039, "v0": -14.267, "v1": 31.740, "v2": -36.109, "v3": 28.850, "v4": -9.392, "amplitude": 36.197, "phase_angle": 176.003, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.035, "frame": { "rmsd": 0.013, "origin": [ 233.953, 276.689, 114.974 ], "x_axis": [ -0.271, 0.786, 0.555 ], "y_axis": [ -0.051, 0.564, -0.824 ], "z_axis": [ -0.961, -0.252, -0.113 ], "quaternion": [ 0.543, -0.263, -0.698, 0.385 ] } }, { "index": 2014, "index_chain": 2014, "chain_name": "A", "nt_resnum": 2188, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2188", "linked_nts": [ "///A/2187", "///A/2189" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 132.811, "beta": -128.738, "gamma": 137.075, "delta": 86.072, "epsilon": 163.108, "zeta": 45.427, "epsilon_zeta": 117.681, "bb_type": "--", "chi": -169.026, "glyco_bond": "anti", "C5prime_xyz": [ -1.177, 8.655, 1.137 ], "P_xyz": [ 1.351, 8.486, 0.435 ], "form": ".", "ssZp": 3.729, "Dp": 3.897, "splay_angle": 22.854, "splay_distance": 3.811, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 155.450, "theta": -74.233, "eta_prime": 173.100, "theta_prime": -116.977, "eta_base": -114.719, "theta_base": -77.142, "v0": 0.638, "v1": -19.236, "v2": 29.345, "v3": -29.884, "v4": 18.528, "amplitude": 30.775, "phase_angle": 17.535, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 231.988, 272.231, 111.523 ], "x_axis": [ -0.800, 0.499, -0.332 ], "y_axis": [ 0.573, 0.476, -0.667 ], "z_axis": [ -0.175, -0.724, -0.667 ], "quaternion": [ 0.046, 0.313, 0.858, -0.405 ] } }, { "index": 2015, "index_chain": 2015, "chain_name": "A", "nt_resnum": 2189, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2189", "linked_nts": [ "///A/2188", "///A/2190" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop,phosphate", "alpha": -177.960, "beta": 100.963, "gamma": 129.305, "delta": 83.904, "epsilon": -100.313, "zeta": -121.618, "epsilon_zeta": 21.305, "bb_type": "--", "chi": 177.811, "glyco_bond": "anti", "C5prime_xyz": [ -1.497, 8.328, 1.814 ], "P_xyz": [ -0.293, 9.807, 0.027 ], "form": ".", "ssZp": 4.553, "Dp": 4.662, "splay_angle": 22.234, "splay_distance": 3.446, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 138.333, "theta": 168.617, "eta_prime": 168.696, "theta_prime": 176.169, "eta_base": -117.679, "theta_base": -172.077, "v0": 3.682, "v1": -24.526, "v2": 34.866, "v3": -33.749, "v4": 19.013, "amplitude": 35.767, "phase_angle": 12.889, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 229.566, 271.382, 108.706 ], "x_axis": [ -0.131, 0.742, -0.657 ], "y_axis": [ 0.957, -0.080, -0.280 ], "z_axis": [ -0.261, -0.665, -0.700 ], "quaternion": [ 0.150, 0.642, 0.662, -0.357 ] } }, { "index": 2016, "index_chain": 2016, "chain_name": "A", "nt_resnum": 2190, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2190", "linked_nts": [ "///A/2189", "///A/2191" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop", "alpha": -63.870, "beta": 132.528, "gamma": 60.104, "delta": 82.684, "epsilon": -162.415, "zeta": -61.628, "epsilon_zeta": -100.787, "bb_type": "BI", "chi": -165.004, "glyco_bond": "anti", "C5prime_xyz": [ -1.205, 8.710, 0.832 ], "P_xyz": [ 1.342, 8.518, 0.244 ], "form": ".", "ssZp": 4.412, "Dp": 4.501, "splay_angle": 41.770, "splay_distance": 6.478, "splay_ratio": 0.357, "d22": null, "d64": null, "eta": 153.210, "theta": -95.157, "eta_prime": 168.027, "theta_prime": -97.889, "eta_base": -171.296, "theta_base": -54.010, "v0": 2.844, "v1": -24.273, "v2": 35.224, "v3": -34.522, "v4": 20.015, "amplitude": 36.333, "phase_angle": 14.194, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.397, "filter_rmsd": 0.069, "frame": { "rmsd": 0.008, "origin": [ 227.868, 268.450, 108.080 ], "x_axis": [ 0.294, 0.690, -0.661 ], "y_axis": [ 0.864, -0.487, -0.124 ], "z_axis": [ -0.408, -0.535, -0.740 ], "quaternion": [ 0.129, 0.794, 0.490, -0.336 ] } }, { "index": 2017, "index_chain": 2017, "chain_name": "A", "nt_resnum": 2191, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2191", "linked_nts": [ "///A/2190", "///A/2192" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,internal-loop", "alpha": 136.184, "beta": -131.579, "gamma": -171.030, "delta": 146.789, "epsilon": -64.542, "zeta": -159.029, "epsilon_zeta": 94.486, "bb_type": "BII", "chi": -166.378, "glyco_bond": "anti", "C5prime_xyz": [ -1.682, 8.395, 1.344 ], "P_xyz": [ 0.713, 9.249, 0.685 ], "form": ".", "ssZp": 0.346, "Dp": 0.567, "splay_angle": 76.259, "splay_distance": 11.402, "splay_ratio": 0.622, "d22": null, "d64": null, "eta": -110.239, "theta": -91.113, "eta_prime": -99.401, "theta_prime": -141.015, "eta_base": -32.729, "theta_base": -119.997, "v0": -16.992, "v1": 31.954, "v2": -33.934, "v3": 25.015, "v4": -5.239, "amplitude": 34.473, "phase_angle": 169.852, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.010, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 230.838, 268.878, 102.339 ], "x_axis": [ 0.912, -0.223, -0.343 ], "y_axis": [ -0.022, -0.864, 0.502 ], "z_axis": [ -0.409, -0.451, -0.794 ], "quaternion": [ 0.252, 0.945, -0.065, -0.199 ] } }, { "index": 2018, "index_chain": 2018, "chain_name": "A", "nt_resnum": 2192, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2192", "linked_nts": [ "///A/2191", "///A/2193" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -178.749, "beta": -111.361, "gamma": 68.788, "delta": 83.176, "epsilon": -107.886, "zeta": -56.134, "epsilon_zeta": -51.752, "bb_type": "--", "chi": -164.873, "glyco_bond": "anti", "C5prime_xyz": [ -1.200, 8.588, 0.829 ], "P_xyz": [ 1.020, 7.929, 2.048 ], "form": ".", "ssZp": 4.377, "Dp": 4.781, "splay_angle": 33.524, "splay_distance": 5.674, "splay_ratio": 0.292, "d22": 4.852, "d64": 5.912, "eta": 66.074, "theta": -93.154, "eta_prime": 147.078, "theta_prime": -83.579, "eta_base": 158.646, "theta_base": -57.554, "v0": 4.671, "v1": -25.786, "v2": 35.912, "v3": -34.163, "v4": 18.653, "amplitude": 36.640, "phase_angle": 11.436, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.006, "origin": [ 220.464, 264.198, 101.650 ], "x_axis": [ 0.840, 0.381, -0.386 ], "y_axis": [ 0.412, 0.017, 0.911 ], "z_axis": [ 0.354, -0.924, -0.143 ], "quaternion": [ 0.655, 0.701, 0.283, -0.012 ] } }, { "index": 2019, "index_chain": 2019, "chain_name": "A", "nt_resnum": 2193, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2193", "linked_nts": [ "///A/2192", "///A/2194" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,cap-donor", "alpha": -70.178, "beta": 110.635, "gamma": 137.186, "delta": 84.148, "epsilon": -103.227, "zeta": -100.526, "epsilon_zeta": -2.701, "bb_type": "--", "chi": -165.179, "glyco_bond": "anti", "C5prime_xyz": [ -1.494, 8.768, 0.785 ], "P_xyz": [ -0.826, 10.050, -1.413 ], "form": ".", "ssZp": 4.176, "Dp": 4.562, "splay_angle": 69.316, "splay_distance": 9.410, "splay_ratio": 0.597, "d22": null, "d64": null, "eta": -153.581, "theta": -118.332, "eta_prime": -127.096, "theta_prime": -111.240, "eta_base": -74.133, "theta_base": -46.573, "v0": -1.511, "v1": -19.863, "v2": 32.265, "v3": -34.056, "v4": 22.529, "amplitude": 34.574, "phase_angle": 21.057, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.005, "origin": [ 225.831, 263.265, 100.063 ], "x_axis": [ 0.974, -0.194, 0.119 ], "y_axis": [ -0.206, -0.524, 0.827 ], "z_axis": [ -0.098, -0.829, -0.550 ], "quaternion": [ 0.474, 0.873, -0.114, 0.006 ] } }, { "index": 2020, "index_chain": 2020, "chain_name": "A", "nt_resnum": 2194, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2194", "linked_nts": [ "///A/2193", "///A/2195" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-stack,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate", "alpha": -161.579, "beta": -123.805, "gamma": 124.698, "delta": 150.782, "epsilon": -111.088, "zeta": -81.838, "epsilon_zeta": -29.250, "bb_type": "--", "chi": 139.045, "glyco_bond": "--", "C5prime_xyz": [ -2.600, 6.612, 3.190 ], "P_xyz": [ -0.868, 4.730, 3.820 ], "form": ".", "ssZp": 0.733, "Dp": 1.252, "splay_angle": 32.595, "splay_distance": 5.419, "splay_ratio": 0.298, "d22": null, "d64": null, "eta": 136.821, "theta": -55.997, "eta_prime": -159.506, "theta_prime": -90.068, "eta_base": -102.078, "theta_base": -67.521, "v0": -12.838, "v1": 29.509, "v2": -34.023, "v3": 27.481, "v4": -9.388, "amplitude": 34.069, "phase_angle": 177.005, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.017, "frame": { "rmsd": 0.017, "origin": [ 226.260, 256.626, 106.718 ], "x_axis": [ 0.064, 0.998, 0.020 ], "y_axis": [ -0.429, 0.046, -0.902 ], "z_axis": [ -0.901, 0.049, 0.431 ], "quaternion": [ 0.621, -0.383, -0.371, 0.575 ] } }, { "index": 2021, "index_chain": 2021, "chain_name": "A", "nt_resnum": 2195, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2195", "linked_nts": [ "///A/2194", "///A/2196" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop,cap-acceptor,splayed-apart", "alpha": -89.806, "beta": 153.175, "gamma": 80.795, "delta": 152.027, "epsilon": -160.236, "zeta": 167.491, "epsilon_zeta": 32.274, "bb_type": "--", "chi": -107.573, "glyco_bond": "anti", "C5prime_xyz": [ -1.642, 8.204, -1.750 ], "P_xyz": [ 0.907, 7.780, -2.298 ], "form": ".", "ssZp": 1.759, "Dp": 1.854, "splay_angle": 101.956, "splay_distance": 16.198, "splay_ratio": 0.778, "d22": null, "d64": null, "eta": 129.999, "theta": 172.983, "eta_prime": -148.657, "theta_prime": 128.178, "eta_base": -106.485, "theta_base": 129.157, "v0": -15.213, "v1": 32.183, "v2": -35.898, "v3": 28.034, "v4": -8.237, "amplitude": 36.079, "phase_angle": 174.250, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 222.236, 253.137, 107.719 ], "x_axis": [ -0.854, 0.466, -0.229 ], "y_axis": [ -0.097, -0.576, -0.812 ], "z_axis": [ -0.510, -0.671, 0.537 ], "quaternion": [ 0.163, -0.215, -0.430, 0.861 ] } }, { "index": 2022, "index_chain": 2022, "chain_name": "A", "nt_resnum": 2196, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2196", "linked_nts": [ "///A/2195", "///A/2197" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": 125.343, "beta": 137.031, "gamma": 171.387, "delta": 79.058, "epsilon": 158.194, "zeta": 146.351, "epsilon_zeta": 11.842, "bb_type": "--", "chi": -177.072, "glyco_bond": "anti", "C5prime_xyz": [ -1.500, 8.499, 1.514 ], "P_xyz": [ -1.064, 10.943, 0.641 ], "form": ".", "ssZp": 4.042, "Dp": 4.168, "splay_angle": 103.715, "splay_distance": 13.033, "splay_ratio": 0.786, "d22": null, "d64": null, "eta": 146.250, "theta": 1.770, "eta_prime": 113.606, "theta_prime": -32.827, "eta_base": 112.851, "theta_base": -35.715, "v0": 3.070, "v1": -25.775, "v2": 37.426, "v3": -36.625, "v4": 21.168, "amplitude": 38.590, "phase_angle": 14.107, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.110, "frame": { "rmsd": 0.009, "origin": [ 235.467, 243.834, 106.848 ], "x_axis": [ 0.128, 0.971, 0.202 ], "y_axis": [ -0.914, 0.194, -0.356 ], "z_axis": [ -0.385, -0.139, 0.912 ], "quaternion": [ 0.747, -0.072, -0.196, 0.631 ] } }, { "index": 2023, "index_chain": 2023, "chain_name": "A", "nt_resnum": 2197, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2197", "linked_nts": [ "///A/2196", "///A/2198" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-pair-contact,internal-loop,splayed-apart", "alpha": 82.955, "beta": -165.221, "gamma": 120.174, "delta": 85.218, "epsilon": -145.901, "zeta": -97.146, "epsilon_zeta": -48.755, "bb_type": "BI", "chi": 165.659, "glyco_bond": "--", "C5prime_xyz": [ -0.928, 7.627, 2.343 ], "P_xyz": [ 1.615, 7.999, 1.758 ], "form": ".", "ssZp": 4.650, "Dp": 4.765, "splay_angle": 97.435, "splay_distance": 11.629, "splay_ratio": 0.752, "d22": null, "d64": null, "eta": 43.553, "theta": -133.133, "eta_prime": 98.256, "theta_prime": 179.746, "eta_base": 172.366, "theta_base": 96.315, "v0": 15.341, "v1": -34.539, "v2": 39.630, "v3": -31.812, "v4": 10.511, "amplitude": 39.706, "phase_angle": 356.454, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 222.697, 246.330, 107.586 ], "x_axis": [ 0.723, 0.373, -0.581 ], "y_axis": [ 0.613, -0.735, 0.291 ], "z_axis": [ -0.319, -0.566, -0.760 ], "quaternion": [ 0.239, 0.897, 0.275, -0.251 ] } }, { "index": 2024, "index_chain": 2024, "chain_name": "A", "nt_resnum": 2198, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2198", "linked_nts": [ "///A/2197", "///A/2199" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-canonical,non-pair-contact,internal-loop,splayed-apart", "alpha": 82.789, "beta": 165.883, "gamma": 163.241, "delta": 144.732, "epsilon": -108.771, "zeta": -44.093, "epsilon_zeta": -64.678, "bb_type": "--", "chi": 83.930, "glyco_bond": "syn", "C5prime_xyz": [ -4.917, 4.998, 2.314 ], "P_xyz": [ -4.824, 4.152, 4.802 ], "form": ".", "ssZp": -0.949, "Dp": 1.120, "splay_angle": 29.445, "splay_distance": 5.054, "splay_ratio": 0.283, "d22": null, "d64": null, "eta": 94.875, "theta": -94.512, "eta_prime": 89.975, "theta_prime": -102.057, "eta_base": 48.708, "theta_base": -87.256, "v0": -23.600, "v1": 36.396, "v2": -34.553, "v3": 21.874, "v4": 0.878, "amplitude": 36.803, "phase_angle": 159.860, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 220.442, 237.872, 115.241 ], "x_axis": [ -0.489, -0.753, 0.441 ], "y_axis": [ -0.762, 0.123, -0.635 ], "z_axis": [ 0.424, -0.647, -0.634 ], "quaternion": [ -0.006, -0.506, 0.749, -0.428 ] } }, { "index": 2025, "index_chain": 2025, "chain_name": "A", "nt_resnum": 2199, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2199", "linked_nts": [ "///A/2198", "///A/2200" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-canonical,non-pair-contact,internal-loop", "alpha": -152.563, "beta": 122.034, "gamma": 151.654, "delta": 144.711, "epsilon": -106.603, "zeta": -76.356, "epsilon_zeta": -30.247, "bb_type": "--", "chi": -51.241, "glyco_bond": "--", "C5prime_xyz": [ -3.624, 6.105, -3.144 ], "P_xyz": [ -4.463, 4.243, -4.787 ], "form": ".", "ssZp": -0.101, "Dp": 1.308, "splay_angle": 50.350, "splay_distance": 8.146, "splay_ratio": 0.448, "d22": null, "d64": null, "eta": -168.559, "theta": -142.915, "eta_prime": -141.989, "theta_prime": -127.092, "eta_base": -131.317, "theta_base": -72.724, "v0": -20.506, "v1": 33.549, "v2": -32.997, "v3": 21.945, "v4": -1.120, "amplitude": 34.499, "phase_angle": 163.030, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 222.231, 242.287, 113.552 ], "x_axis": [ 0.991, 0.034, -0.128 ], "y_axis": [ -0.083, 0.913, -0.398 ], "z_axis": [ 0.104, 0.406, 0.908 ], "quaternion": [ 0.976, -0.206, 0.059, 0.030 ] } }, { "index": 2026, "index_chain": 2026, "chain_name": "A", "nt_resnum": 2200, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2200", "linked_nts": [ "///A/2199", "///A/2201" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop,cap-donor", "alpha": -93.574, "beta": 138.391, "gamma": 69.543, "delta": 85.907, "epsilon": -179.775, "zeta": 167.505, "epsilon_zeta": 12.720, "bb_type": "--", "chi": -118.333, "glyco_bond": "anti", "C5prime_xyz": [ -1.236, 8.051, -1.861 ], "P_xyz": [ 0.505, 6.870, -3.442 ], "form": ".", "ssZp": 2.825, "Dp": 4.430, "splay_angle": 73.823, "splay_distance": 10.802, "splay_ratio": 0.602, "d22": null, "d64": null, "eta": 115.139, "theta": 118.341, "eta_prime": 175.792, "theta_prime": 95.733, "eta_base": -139.759, "theta_base": 79.173, "v0": 10.455, "v1": -29.836, "v2": 36.815, "v3": -31.775, "v4": 13.509, "amplitude": 36.851, "phase_angle": 2.523, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.041, "filter_rmsd": 0.037, "frame": { "rmsd": 0.011, "origin": [ 222.535, 247.394, 107.213 ], "x_axis": [ -0.605, -0.284, -0.744 ], "y_axis": [ -0.622, 0.751, 0.219 ], "z_axis": [ 0.497, 0.596, -0.631 ], "quaternion": [ 0.359, -0.262, 0.864, 0.236 ] } }, { "index": 2027, "index_chain": 2027, "chain_name": "A", "nt_resnum": 2201, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2201", "linked_nts": [ "///A/2200", "///A/2202" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart", "alpha": 74.901, "beta": -92.445, "gamma": -159.430, "delta": 149.127, "epsilon": -85.518, "zeta": -146.974, "epsilon_zeta": 61.456, "bb_type": "--", "chi": -108.471, "glyco_bond": "anti", "C5prime_xyz": [ -2.050, 8.236, -1.759 ], "P_xyz": [ -1.336, 7.349, -4.126 ], "form": ".", "ssZp": 0.385, "Dp": 0.553, "splay_angle": 111.923, "splay_distance": 15.533, "splay_ratio": 0.830, "d22": null, "d64": null, "eta": -101.603, "theta": -173.341, "eta_prime": -142.148, "theta_prime": -127.175, "eta_base": -154.895, "theta_base": -89.627, "v0": -20.667, "v1": 35.649, "v2": -36.241, "v3": 25.266, "v4": -3.084, "amplitude": 37.362, "phase_angle": 165.924, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.004, "origin": [ 222.791, 253.701, 115.979 ], "x_axis": [ 0.961, -0.045, -0.274 ], "y_axis": [ -0.159, 0.718, -0.678 ], "z_axis": [ 0.227, 0.695, 0.682 ], "quaternion": [ 0.917, -0.374, 0.137, 0.031 ] } }, { "index": 2028, "index_chain": 2028, "chain_name": "A", "nt_resnum": 2202, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2202", "linked_nts": [ "///A/2201", "///A/2203" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-stack,non-pair-contact,internal-loop,cap-acceptor,splayed-apart", "alpha": 79.846, "beta": -69.559, "gamma": -161.776, "delta": 150.834, "epsilon": -141.420, "zeta": 68.135, "epsilon_zeta": 150.445, "bb_type": "--", "chi": 146.233, "glyco_bond": "--", "C5prime_xyz": [ -2.541, 6.875, 3.061 ], "P_xyz": [ -0.245, 8.148, 2.789 ], "form": ".", "ssZp": 0.344, "Dp": 1.630, "splay_angle": 89.087, "splay_distance": 12.757, "splay_ratio": 0.702, "d22": null, "d64": null, "eta": -79.372, "theta": -79.094, "eta_prime": -88.883, "theta_prime": -19.251, "eta_base": -64.830, "theta_base": 5.459, "v0": -15.816, "v1": 32.152, "v2": -35.324, "v3": 27.069, "v4": -7.222, "amplitude": 35.602, "phase_angle": 172.830, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.011, "origin": [ 219.388, 267.774, 110.353 ], "x_axis": [ 0.065, -0.242, -0.968 ], "y_axis": [ -0.083, -0.968, 0.237 ], "z_axis": [ -0.994, 0.065, -0.083 ], "quaternion": [ 0.059, 0.727, -0.112, -0.674 ] } }, { "index": 2029, "index_chain": 2029, "chain_name": "A", "nt_resnum": 2203, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2203", "linked_nts": [ "///A/2202", "///A/2204" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -118.412, "beta": 113.922, "gamma": 115.661, "delta": 152.151, "epsilon": -37.951, "zeta": -158.018, "epsilon_zeta": 120.067, "bb_type": "--", "chi": -130.149, "glyco_bond": "anti", "C5prime_xyz": [ -1.619, 8.634, -0.606 ], "P_xyz": [ 0.411, 8.358, -2.246 ], "form": ".", "ssZp": -0.759, "Dp": 0.654, "splay_angle": 67.683, "splay_distance": 10.884, "splay_ratio": 0.557, "d22": 7.365, "d64": 7.917, "eta": -86.175, "theta": -161.117, "eta_prime": -101.441, "theta_prime": -136.558, "eta_base": -86.995, "theta_base": -111.647, "v0": -18.403, "v1": 35.259, "v2": -37.746, "v3": 28.112, "v4": -6.345, "amplitude": 38.258, "phase_angle": 170.612, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 215.117, 256.203, 113.610 ], "x_axis": [ 0.875, -0.451, 0.175 ], "y_axis": [ 0.188, 0.651, 0.735 ], "z_axis": [ -0.446, -0.611, 0.655 ], "quaternion": [ 0.892, 0.377, -0.174, -0.179 ] } }, { "index": 2030, "index_chain": 2030, "chain_name": "A", "nt_resnum": 2204, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2204", "linked_nts": [ "///A/2203", "///A/2205" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": -8.265, "beta": 101.720, "gamma": -58.835, "delta": 84.727, "epsilon": -177.504, "zeta": 35.491, "epsilon_zeta": 147.006, "bb_type": "--", "chi": -158.313, "glyco_bond": "anti", "C5prime_xyz": [ -1.117, 8.637, 0.489 ], "P_xyz": [ -0.390, 9.500, 2.854 ], "form": ".", "ssZp": 4.242, "Dp": 4.356, "splay_angle": 25.383, "splay_distance": 4.778, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 66.001, "theta": -109.610, "eta_prime": 109.419, "theta_prime": -105.455, "eta_base": 148.163, "theta_base": -67.659, "v0": 4.885, "v1": -24.434, "v2": 33.549, "v3": -31.719, "v4": 16.965, "amplitude": 34.134, "phase_angle": 10.623, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.107, "frame": { "rmsd": 0.007, "origin": [ 208.407, 256.079, 122.180 ], "x_axis": [ 0.497, -0.599, -0.627 ], "y_axis": [ 0.138, 0.768, -0.625 ], "z_axis": [ 0.857, 0.224, 0.464 ], "quaternion": [ 0.826, -0.257, 0.449, -0.223 ] } }, { "index": 2031, "index_chain": 2031, "chain_name": "A", "nt_resnum": 2205, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2205", "linked_nts": [ "///A/2204", "///A/2206" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -139.514, "beta": 89.318, "gamma": 179.574, "delta": 81.877, "epsilon": 172.206, "zeta": -82.344, "epsilon_zeta": -105.450, "bb_type": "BI", "chi": -156.101, "glyco_bond": "anti", "C5prime_xyz": [ -1.676, 8.783, 0.272 ], "P_xyz": [ -2.816, 10.478, -1.367 ], "form": "A", "ssZp": 4.115, "Dp": 4.182, "splay_angle": 22.527, "splay_distance": 3.678, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": -136.790, "theta": 131.748, "eta_prime": -125.154, "theta_prime": 156.824, "eta_base": -75.513, "theta_base": -172.638, "v0": -1.055, "v1": -20.910, "v2": 33.544, "v3": -35.150, "v4": 22.877, "amplitude": 35.763, "phase_angle": 20.292, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.006, "origin": [ 212.444, 253.704, 121.230 ], "x_axis": [ 0.933, -0.138, -0.333 ], "y_axis": [ 0.180, 0.979, 0.099 ], "z_axis": [ 0.313, -0.152, 0.938 ], "quaternion": [ 0.981, 0.064, 0.165, -0.081 ] } }, { "index": 2032, "index_chain": 2032, "chain_name": "A", "nt_resnum": 2206, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2206", "linked_nts": [ "///A/2205", "///A/2207" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 169.119, "beta": -145.341, "gamma": 161.549, "delta": 83.428, "epsilon": 179.139, "zeta": 68.565, "epsilon_zeta": 110.575, "bb_type": "--", "chi": 179.307, "glyco_bond": "anti", "C5prime_xyz": [ -1.470, 8.523, 1.690 ], "P_xyz": [ 0.852, 9.511, 0.988 ], "form": ".", "ssZp": 3.840, "Dp": 4.149, "splay_angle": 21.913, "splay_distance": 4.245, "splay_ratio": 0.216, "d22": 3.951, "d64": 4.677, "eta": 171.698, "theta": -76.407, "eta_prime": -170.809, "theta_prime": -114.336, "eta_base": -133.460, "theta_base": -90.207, "v0": -1.322, "v1": -18.843, "v2": 30.621, "v3": -32.272, "v4": 21.205, "amplitude": 32.774, "phase_angle": 20.883, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.283, "filter_rmsd": 0.071, "frame": { "rmsd": 0.011, "origin": [ 213.021, 251.362, 124.007 ], "x_axis": [ 0.912, 0.334, -0.239 ], "y_axis": [ -0.278, 0.930, 0.241 ], "z_axis": [ 0.303, -0.154, 0.941 ], "quaternion": [ 0.972, 0.101, 0.139, 0.157 ] } }, { "index": 2033, "index_chain": 2033, "chain_name": "A", "nt_resnum": 2207, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2207", "linked_nts": [ "///A/2206", "///A/2208" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate", "alpha": -70.183, "beta": -69.081, "gamma": -116.921, "delta": 82.515, "epsilon": -176.687, "zeta": -86.058, "epsilon_zeta": -90.628, "bb_type": "BI", "chi": -165.187, "glyco_bond": "anti", "C5prime_xyz": [ -1.039, 8.633, 0.889 ], "P_xyz": [ -2.018, 10.657, -0.505 ], "form": "A", "ssZp": 4.331, "Dp": 4.384, "splay_angle": 20.355, "splay_distance": 3.148, "splay_ratio": 0.177, "d22": 4.279, "d64": 4.091, "eta": 151.504, "theta": 137.860, "eta_prime": 163.266, "theta_prime": 167.549, "eta_base": -142.705, "theta_base": -153.776, "v0": 4.356, "v1": -25.236, "v2": 35.430, "v3": -33.930, "v4": 18.694, "amplitude": 36.211, "phase_angle": 11.927, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.068, "frame": { "rmsd": 0.007, "origin": [ 216.782, 250.483, 125.768 ], "x_axis": [ 0.558, 0.817, -0.144 ], "y_axis": [ -0.704, 0.558, 0.440 ], "z_axis": [ 0.439, -0.144, 0.887 ], "quaternion": [ 0.866, 0.169, 0.168, 0.439 ] } }, { "index": 2034, "index_chain": 2034, "chain_name": "A", "nt_resnum": 2208, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2208", "linked_nts": [ "///A/2207", "///A/2209" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,bulge,internal-loop", "alpha": -178.977, "beta": -128.728, "gamma": 135.694, "delta": 79.948, "epsilon": -128.072, "zeta": -86.150, "epsilon_zeta": -41.922, "bb_type": "--", "chi": -174.381, "glyco_bond": "anti", "C5prime_xyz": [ -1.593, 8.691, 1.322 ], "P_xyz": [ 0.920, 8.935, 0.676 ], "form": ".", "ssZp": 4.513, "Dp": 4.598, "splay_angle": 26.472, "splay_distance": 4.172, "splay_ratio": 0.229, "d22": 4.090, "d64": 3.969, "eta": 163.096, "theta": -132.859, "eta_prime": 179.688, "theta_prime": -135.951, "eta_base": -138.769, "theta_base": -97.892, "v0": -2.350, "v1": -20.361, "v2": 34.084, "v3": -36.439, "v4": 24.461, "amplitude": 36.822, "phase_angle": 22.237, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 219.144, 249.735, 127.710 ], "x_axis": [ 0.076, 0.993, 0.091 ], "y_axis": [ -0.850, 0.016, 0.527 ], "z_axis": [ 0.522, -0.118, 0.845 ], "quaternion": [ 0.696, 0.232, 0.155, 0.662 ] } }, { "index": 2035, "index_chain": 2035, "chain_name": "A", "nt_resnum": 2209, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2209", "linked_nts": [ "///A/2208", "///A/2210" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -37.280, "beta": 154.980, "gamma": 37.467, "delta": 79.198, "epsilon": -119.574, "zeta": -98.074, "epsilon_zeta": -21.501, "bb_type": "--", "chi": -160.925, "glyco_bond": "anti", "C5prime_xyz": [ -1.380, 8.731, 0.580 ], "P_xyz": [ 1.200, 9.019, 0.870 ], "form": "A", "ssZp": 4.284, "Dp": 4.741, "splay_angle": 22.178, "splay_distance": 3.567, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": 170.321, "theta": -141.929, "eta_prime": -173.590, "theta_prime": -137.940, "eta_base": -117.330, "theta_base": -112.781, "v0": 1.204, "v1": -24.062, "v2": 36.556, "v3": -36.899, "v4": 22.492, "amplitude": 38.201, "phase_angle": 16.873, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.205, "filter_rmsd": 0.105, "frame": { "rmsd": 0.002, "origin": [ 221.324, 251.333, 130.888 ], "x_axis": [ -0.581, 0.712, 0.394 ], "y_axis": [ -0.645, -0.698, 0.311 ], "z_axis": [ 0.496, -0.073, 0.865 ], "quaternion": [ 0.383, 0.251, 0.067, 0.887 ] } }, { "index": 2036, "index_chain": 2036, "chain_name": "A", "nt_resnum": 2210, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2210", "linked_nts": [ "///A/2209", "///A/2211" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -46.053, "beta": 145.995, "gamma": 46.790, "delta": 80.492, "epsilon": -136.480, "zeta": -44.084, "epsilon_zeta": -92.397, "bb_type": "BI", "chi": -167.340, "glyco_bond": "anti", "C5prime_xyz": [ -1.900, 8.776, 0.910 ], "P_xyz": [ 0.650, 9.222, 1.205 ], "form": "A", "ssZp": 4.403, "Dp": 4.544, "splay_angle": 19.180, "splay_distance": 3.422, "splay_ratio": 0.177, "d22": null, "d64": null, "eta": 162.521, "theta": -123.615, "eta_prime": 176.018, "theta_prime": -140.307, "eta_base": -147.046, "theta_base": -128.489, "v0": -3.730, "v1": -18.994, "v2": 33.168, "v3": -36.277, "v4": 25.220, "amplitude": 36.412, "phase_angle": 24.366, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.544, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 222.682, 252.487, 133.978 ], "x_axis": [ -0.970, 0.244, -0.012 ], "y_axis": [ -0.244, -0.965, 0.098 ], "z_axis": [ 0.012, 0.098, 0.995 ], "quaternion": [ 0.123, -0.000, 0.049, 0.991 ] } }, { "index": 2037, "index_chain": 2037, "chain_name": "A", "nt_resnum": 2211, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2211", "linked_nts": [ "///A/2210", "///A/2212" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -127.337, "beta": 108.086, "gamma": 142.402, "delta": 80.764, "epsilon": -119.727, "zeta": -104.506, "epsilon_zeta": -15.220, "bb_type": "--", "chi": 172.720, "glyco_bond": "anti", "C5prime_xyz": [ -1.416, 8.158, 2.083 ], "P_xyz": [ -0.534, 10.222, 0.750 ], "form": "A", "ssZp": 4.775, "Dp": 4.783, "splay_angle": 23.158, "splay_distance": 3.487, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 162.564, "theta": 173.650, "eta_prime": 170.481, "theta_prime": -175.041, "eta_base": -156.920, "theta_base": -141.412, "v0": 5.668, "v1": -27.176, "v2": 37.310, "v3": -35.089, "v4": 18.570, "amplitude": 37.918, "phase_angle": 10.274, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.013, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 222.707, 254.911, 136.394 ], "x_axis": [ -0.986, -0.145, -0.079 ], "y_axis": [ 0.128, -0.974, 0.189 ], "z_axis": [ -0.104, 0.176, 0.979 ], "quaternion": [ -0.069, -0.046, 0.092, 0.992 ] } }, { "index": 2038, "index_chain": 2038, "chain_name": "A", "nt_resnum": 2212, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2212", "linked_nts": [ "///A/2211", "///A/2213" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -33.957, "beta": 148.376, "gamma": 39.296, "delta": 80.298, "epsilon": -141.752, "zeta": -81.089, "epsilon_zeta": -60.664, "bb_type": "BI", "chi": -170.568, "glyco_bond": "anti", "C5prime_xyz": [ -1.282, 8.621, 1.162 ], "P_xyz": [ 1.295, 8.586, 1.579 ], "form": "A", "ssZp": 4.601, "Dp": 4.670, "splay_angle": 23.617, "splay_distance": 3.670, "splay_ratio": 0.206, "d22": 4.212, "d64": 4.285, "eta": 169.106, "theta": -141.667, "eta_prime": -179.049, "theta_prime": -141.108, "eta_base": -139.435, "theta_base": -116.798, "v0": 2.396, "v1": -24.722, "v2": 36.513, "v3": -36.128, "v4": 21.248, "amplitude": 37.814, "phase_angle": 15.070, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.176, "filter_rmsd": 0.063, "frame": { "rmsd": 0.004, "origin": [ 221.708, 256.980, 139.016 ], "x_axis": [ -0.713, -0.702, -0.010 ], "y_axis": [ 0.682, -0.696, 0.226 ], "z_axis": [ -0.166, 0.155, 0.974 ], "quaternion": [ -0.376, -0.048, 0.104, 0.920 ] } }, { "index": 2039, "index_chain": 2039, "chain_name": "A", "nt_resnum": 2213, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2213", "linked_nts": [ "///A/2212", "///A/2214" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -48.991, "beta": 165.223, "gamma": 43.541, "delta": 78.685, "epsilon": -117.438, "zeta": -100.781, "epsilon_zeta": -16.657, "bb_type": "--", "chi": -167.756, "glyco_bond": "anti", "C5prime_xyz": [ -1.384, 8.597, 0.979 ], "P_xyz": [ 1.174, 8.924, 1.365 ], "form": "A", "ssZp": 4.524, "Dp": 4.799, "splay_angle": 18.579, "splay_distance": 2.904, "splay_ratio": 0.162, "d22": null, "d64": null, "eta": 173.571, "theta": -148.991, "eta_prime": -176.349, "theta_prime": -144.951, "eta_base": -138.681, "theta_base": -119.924, "v0": 3.802, "v1": -26.787, "v2": 38.376, "v3": -37.242, "v4": 21.049, "amplitude": 39.417, "phase_angle": 13.199, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.649, "filter_rmsd": 0.103, "frame": { "rmsd": 0.005, "origin": [ 219.696, 257.967, 141.923 ], "x_axis": [ -0.219, -0.975, 0.045 ], "y_axis": [ 0.959, -0.206, 0.196 ], "z_axis": [ -0.182, 0.086, 0.979 ], "quaternion": [ 0.623, 0.044, -0.091, -0.775 ] } }, { "index": 2040, "index_chain": 2040, "chain_name": "A", "nt_resnum": 2214, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2214", "linked_nts": [ "///A/2213", "///A/2215" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -55.442, "beta": 129.304, "gamma": 68.539, "delta": 79.920, "epsilon": -151.387, "zeta": -76.433, "epsilon_zeta": -74.954, "bb_type": "BI", "chi": -173.799, "glyco_bond": "anti", "C5prime_xyz": [ -1.901, 8.612, 1.298 ], "P_xyz": [ 0.570, 9.031, 0.568 ], "form": "A", "ssZp": 4.580, "Dp": 4.586, "splay_angle": 22.270, "splay_distance": 3.424, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 157.468, "theta": -143.220, "eta_prime": 177.297, "theta_prime": -151.003, "eta_base": -141.122, "theta_base": -120.855, "v0": -0.343, "v1": -22.770, "v2": 35.930, "v3": -37.115, "v4": 23.605, "amplitude": 38.023, "phase_angle": 19.101, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.786, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 218.078, 257.720, 144.323 ], "x_axis": [ 0.262, -0.964, -0.045 ], "y_axis": [ 0.920, 0.236, 0.314 ], "z_axis": [ -0.292, -0.123, 0.948 ], "quaternion": [ 0.782, 0.140, -0.079, -0.602 ] } }, { "index": 2041, "index_chain": 2041, "chain_name": "A", "nt_resnum": 2215, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2215", "linked_nts": [ "///A/2214", "///A/2216" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -57.881, "beta": 173.417, "gamma": 47.992, "delta": 81.889, "epsilon": -103.571, "zeta": -94.533, "epsilon_zeta": -9.037, "bb_type": "--", "chi": -163.068, "glyco_bond": "anti", "C5prime_xyz": [ -1.271, 8.614, 0.733 ], "P_xyz": [ 1.309, 8.856, 1.118 ], "form": "A", "ssZp": 4.240, "Dp": 4.771, "splay_angle": 21.646, "splay_distance": 3.492, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": -178.285, "theta": -136.511, "eta_prime": -170.711, "theta_prime": -134.655, "eta_base": -127.370, "theta_base": -111.808, "v0": 4.866, "v1": -26.412, "v2": 36.783, "v3": -35.005, "v4": 19.013, "amplitude": 37.518, "phase_angle": 11.358, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.903, "filter_rmsd": 0.105, "frame": { "rmsd": 0.004, "origin": [ 216.277, 256.022, 146.689 ], "x_axis": [ 0.779, -0.592, 0.208 ], "y_axis": [ 0.519, 0.795, 0.314 ], "z_axis": [ -0.352, -0.137, 0.926 ], "quaternion": [ 0.935, 0.121, -0.150, -0.297 ] } }, { "index": 2042, "index_chain": 2042, "chain_name": "A", "nt_resnum": 2216, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2216", "linked_nts": [ "///A/2215", "///A/2217" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -72.221, "beta": 120.370, "gamma": 89.807, "delta": 80.442, "epsilon": 179.256, "zeta": -71.713, "epsilon_zeta": -109.031, "bb_type": "BI", "chi": 175.965, "glyco_bond": "anti", "C5prime_xyz": [ -2.059, 8.477, 1.773 ], "P_xyz": [ 0.285, 9.253, 0.937 ], "form": "A", "ssZp": 3.876, "Dp": 4.182, "splay_angle": 20.514, "splay_distance": 3.091, "splay_ratio": 0.180, "d22": null, "d64": null, "eta": 150.995, "theta": -140.327, "eta_prime": -178.689, "theta_prime": -148.317, "eta_base": -136.034, "theta_base": -126.407, "v0": -4.875, "v1": -17.761, "v2": 32.244, "v3": -35.978, "v4": 25.790, "amplitude": 35.943, "phase_angle": 26.224, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.073, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 215.594, 254.420, 149.716 ], "x_axis": [ 0.990, -0.099, -0.102 ], "y_axis": [ 0.119, 0.969, 0.218 ], "z_axis": [ 0.077, -0.227, 0.971 ], "quaternion": [ 0.991, 0.112, 0.045, -0.055 ] } }, { "index": 2043, "index_chain": 2043, "chain_name": "A", "nt_resnum": 2217, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2217", "linked_nts": [ "///A/2216", "///A/2218" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -138.795, "beta": -109.244, "gamma": 72.838, "delta": 80.694, "epsilon": 174.980, "zeta": -85.975, "epsilon_zeta": -99.045, "bb_type": "BI", "chi": -138.399, "glyco_bond": "anti", "C5prime_xyz": [ -1.698, 8.753, -0.772 ], "P_xyz": [ 0.834, 8.772, -0.092 ], "form": "A", "ssZp": 3.745, "Dp": 4.251, "splay_angle": 19.418, "splay_distance": 3.194, "splay_ratio": 0.170, "d22": 3.995, "d64": 4.155, "eta": 158.969, "theta": -137.462, "eta_prime": 168.472, "theta_prime": -149.292, "eta_base": -154.582, "theta_base": -133.871, "v0": -1.370, "v1": -21.518, "v2": 34.957, "v3": -36.636, "v4": 23.979, "amplitude": 37.348, "phase_angle": 20.613, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 215.771, 252.314, 151.972 ], "x_axis": [ 0.813, 0.581, 0.046 ], "y_axis": [ -0.553, 0.745, 0.372 ], "z_axis": [ 0.182, -0.328, 0.927 ], "quaternion": [ 0.933, 0.187, 0.036, 0.304 ] } }, { "index": 2044, "index_chain": 2044, "chain_name": "A", "nt_resnum": 2218, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2218", "linked_nts": [ "///A/2217", "///A/2219" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 153.906, "beta": -142.530, "gamma": 166.229, "delta": 82.332, "epsilon": -145.711, "zeta": -121.036, "epsilon_zeta": -24.675, "bb_type": "--", "chi": -171.937, "glyco_bond": "anti", "C5prime_xyz": [ -1.263, 8.486, 1.254 ], "P_xyz": [ 0.631, 9.561, -0.196 ], "form": "A", "ssZp": 4.617, "Dp": 4.664, "splay_angle": 29.955, "splay_distance": 4.437, "splay_ratio": 0.258, "d22": null, "d64": null, "eta": 161.780, "theta": -168.280, "eta_prime": 175.796, "theta_prime": -167.109, "eta_base": -146.783, "theta_base": -142.724, "v0": 5.302, "v1": -26.656, "v2": 36.739, "v3": -34.649, "v4": 18.542, "amplitude": 37.381, "phase_angle": 10.635, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.428, "filter_rmsd": 0.108, "frame": { "rmsd": 0.007, "origin": [ 217.111, 250.680, 154.366 ], "x_axis": [ 0.530, 0.833, 0.159 ], "y_axis": [ -0.801, 0.430, 0.417 ], "z_axis": [ 0.279, -0.349, 0.895 ], "quaternion": [ 0.845, 0.227, 0.035, 0.483 ] } }, { "index": 2045, "index_chain": 2045, "chain_name": "A", "nt_resnum": 2219, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2219", "linked_nts": [ "///A/2218", "///A/2220" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 19.312, "beta": 123.391, "gamma": 11.164, "delta": 78.406, "epsilon": -140.489, "zeta": -92.505, "epsilon_zeta": -47.984, "bb_type": "BI", "chi": -171.269, "glyco_bond": "anti", "C5prime_xyz": [ -1.373, 8.636, 1.176 ], "P_xyz": [ 1.016, 8.242, 2.156 ], "form": "A", "ssZp": 4.656, "Dp": 4.710, "splay_angle": 22.554, "splay_distance": 3.467, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 179.003, "theta": -145.952, "eta_prime": -174.830, "theta_prime": -143.254, "eta_base": -145.121, "theta_base": -123.045, "v0": 1.908, "v1": -25.158, "v2": 37.654, "v3": -37.589, "v4": 22.467, "amplitude": 39.150, "phase_angle": 15.890, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 219.442, 248.592, 157.512 ], "x_axis": [ 0.018, 0.985, 0.173 ], "y_axis": [ -0.994, -0.001, 0.110 ], "z_axis": [ 0.108, -0.174, 0.979 ], "quaternion": [ 0.706, 0.100, -0.023, 0.700 ] } }, { "index": 2046, "index_chain": 2046, "chain_name": "A", "nt_resnum": 2220, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2220", "linked_nts": [ "///A/2219", "///A/2221" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -40.704, "beta": 153.467, "gamma": 45.196, "delta": 80.949, "epsilon": -178.626, "zeta": -83.929, "epsilon_zeta": -94.697, "bb_type": "BI", "chi": -174.895, "glyco_bond": "anti", "C5prime_xyz": [ -1.579, 8.528, 1.376 ], "P_xyz": [ 0.978, 8.742, 1.885 ], "form": "A", "ssZp": 4.316, "Dp": 4.359, "splay_angle": 24.806, "splay_distance": 3.648, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 166.490, "theta": -149.306, "eta_prime": -177.405, "theta_prime": -148.188, "eta_base": -138.559, "theta_base": -123.407, "v0": 0.752, "v1": -22.884, "v2": 35.071, "v3": -35.614, "v4": 21.998, "amplitude": 36.767, "phase_angle": 17.473, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.346, "filter_rmsd": 0.038, "frame": { "rmsd": 0.009, "origin": [ 221.365, 248.290, 160.381 ], "x_axis": [ -0.472, 0.881, 0.040 ], "y_axis": [ -0.882, -0.472, 0.001 ], "z_axis": [ 0.020, -0.035, 0.999 ], "quaternion": [ 0.514, 0.017, -0.010, 0.858 ] } }, { "index": 2047, "index_chain": 2047, "chain_name": "A", "nt_resnum": 2221, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2221", "linked_nts": [ "///A/2220", "///A/2222" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -147.262, "beta": -135.990, "gamma": 111.273, "delta": 84.476, "epsilon": -155.602, "zeta": -66.610, "epsilon_zeta": -88.992, "bb_type": "BI", "chi": -172.239, "glyco_bond": "anti", "C5prime_xyz": [ -1.318, 8.614, 1.256 ], "P_xyz": [ 1.296, 8.397, 1.232 ], "form": "A", "ssZp": 4.413, "Dp": 4.474, "splay_angle": 21.831, "splay_distance": 3.450, "splay_ratio": 0.191, "d22": 4.655, "d64": 4.371, "eta": 166.280, "theta": -133.335, "eta_prime": 177.135, "theta_prime": -139.696, "eta_base": -145.447, "theta_base": -121.176, "v0": 0.977, "v1": -21.675, "v2": 32.905, "v3": -33.288, "v4": 20.387, "amplitude": 34.414, "phase_angle": 17.031, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.006, "origin": [ 222.909, 248.870, 163.634 ], "x_axis": [ -0.909, 0.412, -0.063 ], "y_axis": [ -0.411, -0.911, -0.030 ], "z_axis": [ -0.069, -0.001, 0.998 ], "quaternion": [ 0.211, -0.034, -0.008, 0.977 ] } }, { "index": 2048, "index_chain": 2048, "chain_name": "A", "nt_resnum": 2222, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2222", "linked_nts": [ "///A/2221", "///A/2223" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -73.931, "beta": -170.304, "gamma": 47.266, "delta": 83.343, "epsilon": -128.535, "zeta": -81.910, "epsilon_zeta": -46.625, "bb_type": "BI", "chi": -154.907, "glyco_bond": "anti", "C5prime_xyz": [ -1.205, 8.737, 0.238 ], "P_xyz": [ 1.312, 9.115, 0.878 ], "form": "A", "ssZp": 4.124, "Dp": 4.691, "splay_angle": 23.855, "splay_distance": 3.872, "splay_ratio": 0.207, "d22": 4.435, "d64": 4.652, "eta": 170.565, "theta": -144.869, "eta_prime": -179.657, "theta_prime": -142.050, "eta_base": -144.868, "theta_base": -121.648, "v0": 3.232, "v1": -24.270, "v2": 34.963, "v3": -34.048, "v4": 19.428, "amplitude": 35.968, "phase_angle": 13.570, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.793, "filter_rmsd": 0.060, "frame": { "rmsd": 0.004, "origin": [ 223.049, 250.381, 166.733 ], "x_axis": [ -0.974, -0.194, -0.121 ], "y_axis": [ 0.186, -0.980, 0.070 ], "z_axis": [ -0.132, 0.046, 0.990 ], "quaternion": [ -0.096, -0.063, 0.029, 0.993 ] } }, { "index": 2049, "index_chain": 2049, "chain_name": "A", "nt_resnum": 2223, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2223", "linked_nts": [ "///A/2222", "///A/2224" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": -80.247, "beta": 133.071, "gamma": 97.835, "delta": 81.951, "epsilon": -113.106, "zeta": -21.471, "epsilon_zeta": -91.634, "bb_type": "--", "chi": -168.267, "glyco_bond": "anti", "C5prime_xyz": [ -1.451, 8.655, 1.007 ], "P_xyz": [ 0.580, 9.366, -0.478 ], "form": ".", "ssZp": 4.426, "Dp": 4.680, "splay_angle": 47.253, "splay_distance": 8.149, "splay_ratio": 0.407, "d22": 6.024, "d64": 7.509, "eta": 175.323, "theta": -94.067, "eta_prime": -170.893, "theta_prime": -91.571, "eta_base": -140.213, "theta_base": -73.747, "v0": 0.789, "v1": -22.836, "v2": 34.940, "v3": -35.452, "v4": 21.853, "amplitude": 36.614, "phase_angle": 17.391, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.100, "frame": { "rmsd": 0.007, "origin": [ 221.783, 251.274, 170.281 ], "x_axis": [ -0.830, -0.551, -0.091 ], "y_axis": [ 0.526, -0.826, 0.203 ], "z_axis": [ -0.187, 0.121, 0.975 ], "quaternion": [ -0.283, -0.073, 0.085, 0.953 ] } }, { "index": 2050, "index_chain": 2050, "chain_name": "A", "nt_resnum": 2224, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2224", "linked_nts": [ "///A/2223", "///A/2225" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,helix,multiplet,internal-loop", "alpha": -95.525, "beta": 119.595, "gamma": 167.541, "delta": 85.266, "epsilon": -85.001, "zeta": -42.264, "epsilon_zeta": -42.737, "bb_type": "--", "chi": -150.732, "glyco_bond": "anti", "C5prime_xyz": [ -1.427, 8.721, -0.022 ], "P_xyz": [ -1.635, 10.488, -1.940 ], "form": ".", "ssZp": 3.335, "Dp": 4.546, "splay_angle": 30.108, "splay_distance": 5.071, "splay_ratio": 0.261, "d22": 3.810, "d64": 3.563, "eta": -137.946, "theta": -122.977, "eta_prime": -109.940, "theta_prime": -149.970, "eta_base": -61.821, "theta_base": -151.748, "v0": 2.108, "v1": -22.467, "v2": 33.047, "v3": -32.770, "v4": 19.414, "amplitude": 34.243, "phase_angle": 15.187, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 216.948, 245.867, 173.997 ], "x_axis": [ -0.269, -0.544, 0.795 ], "y_axis": [ 0.881, 0.196, 0.432 ], "z_axis": [ -0.390, 0.816, 0.426 ], "quaternion": [ 0.582, -0.165, -0.509, -0.612 ] } }, { "index": 2051, "index_chain": 2051, "chain_name": "A", "nt_resnum": 2225, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2225", "linked_nts": [ "///A/2224", "///A/2226" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop", "alpha": -150.523, "beta": 91.897, "gamma": 125.670, "delta": 84.806, "epsilon": -176.722, "zeta": -79.870, "epsilon_zeta": -96.852, "bb_type": "BI", "chi": -161.932, "glyco_bond": "anti", "C5prime_xyz": [ -1.055, 8.624, 0.644 ], "P_xyz": [ -0.503, 9.252, -1.842 ], "form": "A", "ssZp": 4.361, "Dp": 4.406, "splay_angle": 17.255, "splay_distance": 2.695, "splay_ratio": 0.152, "d22": 4.037, "d64": 3.762, "eta": 90.974, "theta": -160.104, "eta_prime": 137.768, "theta_prime": -167.193, "eta_base": 153.690, "theta_base": -122.840, "v0": 4.962, "v1": -25.358, "v2": 34.943, "v3": -33.044, "v4": 17.770, "amplitude": 35.572, "phase_angle": 10.789, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 215.163, 249.373, 177.196 ], "x_axis": [ 0.200, -0.977, -0.072 ], "y_axis": [ 0.963, 0.182, 0.201 ], "z_axis": [ -0.183, -0.109, 0.977 ], "quaternion": [ 0.768, 0.101, -0.036, -0.632 ] } }, { "index": 2052, "index_chain": 2052, "chain_name": "A", "nt_resnum": 2226, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2226", "linked_nts": [ "///A/2225", "///A/2227" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": 169.827, "beta": -132.121, "gamma": 148.209, "delta": 84.885, "epsilon": -155.693, "zeta": -80.428, "epsilon_zeta": -75.265, "bb_type": "BI", "chi": -164.471, "glyco_bond": "anti", "C5prime_xyz": [ -1.445, 8.704, 0.792 ], "P_xyz": [ 0.823, 9.035, -0.462 ], "form": ".", "ssZp": 4.320, "Dp": 4.417, "splay_angle": 61.987, "splay_distance": 8.851, "splay_ratio": 0.517, "d22": null, "d64": null, "eta": 158.503, "theta": -154.740, "eta_prime": -173.218, "theta_prime": -178.473, "eta_base": -107.378, "theta_base": 86.496, "v0": -1.308, "v1": -18.993, "v2": 30.844, "v3": -32.530, "v4": 21.362, "amplitude": 33.011, "phase_angle": 20.878, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.104, "frame": { "rmsd": 0.008, "origin": [ 214.549, 247.500, 179.033 ], "x_axis": [ 0.701, -0.683, 0.205 ], "y_axis": [ 0.541, 0.697, 0.470 ], "z_axis": [ -0.464, -0.218, 0.858 ], "quaternion": [ 0.902, 0.191, -0.186, -0.339 ] } }, { "index": 2053, "index_chain": 2053, "chain_name": "A", "nt_resnum": 2227, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2227", "linked_nts": [ "///A/2226", "///A/2228" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,BI,non-stack,non-pair-contact,junction-loop,splayed-apart", "alpha": -68.274, "beta": -172.350, "gamma": -8.636, "delta": 147.335, "epsilon": -160.866, "zeta": -107.542, "epsilon_zeta": -53.325, "bb_type": "BI", "chi": 17.973, "glyco_bond": "syn", "C5prime_xyz": [ -5.393, 4.118, -1.146 ], "P_xyz": [ -6.341, 3.563, -3.535 ], "form": ".", "ssZp": -1.309, "Dp": 2.079, "splay_angle": 90.270, "splay_distance": 13.413, "splay_ratio": 0.710, "d22": null, "d64": null, "eta": 118.006, "theta": -145.377, "eta_prime": 126.140, "theta_prime": -141.973, "eta_base": 60.010, "theta_base": -111.820, "v0": -22.121, "v1": 36.527, "v2": -36.132, "v3": 24.289, "v4": -1.579, "amplitude": 37.669, "phase_angle": 163.576, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 213.220, 256.120, 177.526 ], "x_axis": [ 0.032, -0.381, -0.924 ], "y_axis": [ -0.586, -0.756, 0.291 ], "z_axis": [ -0.809, 0.533, -0.247 ], "quaternion": [ -0.085, 0.713, -0.339, -0.608 ] } }, { "index": 2054, "index_chain": 2054, "chain_name": "A", "nt_resnum": 2228, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2228", "linked_nts": [ "///A/2227", "///A/2229" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart", "alpha": -46.020, "beta": 171.930, "gamma": 61.201, "delta": 83.111, "epsilon": -120.155, "zeta": -70.756, "epsilon_zeta": -49.399, "bb_type": "--", "chi": 172.984, "glyco_bond": "anti", "C5prime_xyz": [ -1.561, 8.189, 2.046 ], "P_xyz": [ 0.922, 8.298, 2.862 ], "form": ".", "ssZp": 4.684, "Dp": 4.693, "splay_angle": 32.957, "splay_distance": 4.965, "splay_ratio": 0.284, "d22": null, "d64": null, "eta": -153.143, "theta": -117.098, "eta_prime": -139.408, "theta_prime": -112.740, "eta_base": -123.811, "theta_base": -56.353, "v0": 2.315, "v1": -23.569, "v2": 34.635, "v3": -34.287, "v4": 20.196, "amplitude": 35.860, "phase_angle": 15.019, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 211.657, 243.061, 180.157 ], "x_axis": [ 0.846, 0.152, 0.511 ], "y_axis": [ -0.273, 0.947, 0.169 ], "z_axis": [ -0.458, -0.282, 0.843 ], "quaternion": [ 0.953, 0.118, -0.254, 0.111 ] } }, { "index": 2055, "index_chain": 2055, "chain_name": "A", "nt_resnum": 2229, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2229", "linked_nts": [ "///A/2228", "///A/2230" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -52.586, "beta": 162.053, "gamma": 42.722, "delta": 81.918, "epsilon": -161.390, "zeta": -74.714, "epsilon_zeta": -86.676, "bb_type": "BI", "chi": -170.394, "glyco_bond": "anti", "C5prime_xyz": [ -1.132, 8.554, 1.168 ], "P_xyz": [ 1.426, 8.562, 1.697 ], "form": ".", "ssZp": 4.535, "Dp": 4.553, "splay_angle": 24.485, "splay_distance": 4.304, "splay_ratio": 0.229, "d22": 4.260, "d64": 5.178, "eta": 152.196, "theta": -119.782, "eta_prime": -178.279, "theta_prime": -126.351, "eta_base": -93.191, "theta_base": -108.785, "v0": 4.462, "v1": -25.746, "v2": 36.145, "v3": -34.546, "v4": 18.979, "amplitude": 36.931, "phase_angle": 11.838, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.456, "filter_rmsd": 0.066, "frame": { "rmsd": 0.007, "origin": [ 212.601, 243.711, 184.989 ], "x_axis": [ 0.141, 0.940, 0.310 ], "y_axis": [ -0.862, 0.271, -0.429 ], "z_axis": [ -0.487, -0.206, 0.849 ], "quaternion": [ 0.752, -0.074, -0.265, 0.599 ] } }, { "index": 2056, "index_chain": 2056, "chain_name": "A", "nt_resnum": 2230, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2230", "linked_nts": [ "///A/2229", "///A/2231" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,non-stack,canonical,helix,stem-end,coaxial-stack,junction-loop", "alpha": 157.992, "beta": -148.910, "gamma": 179.628, "delta": 82.607, "epsilon": -113.071, "zeta": -109.287, "epsilon_zeta": -3.784, "bb_type": "--", "chi": 173.319, "glyco_bond": "anti", "C5prime_xyz": [ -1.840, 8.454, 1.939 ], "P_xyz": [ 0.073, 10.135, 1.376 ], "form": "A", "ssZp": 4.296, "Dp": 4.436, "splay_angle": 19.528, "splay_distance": 3.350, "splay_ratio": 0.174, "d22": 4.394, "d64": 4.299, "eta": -179.308, "theta": -140.237, "eta_prime": -163.492, "theta_prime": -149.590, "eta_base": -125.161, "theta_base": -122.967, "v0": -3.230, "v1": -18.674, "v2": 32.178, "v3": -35.021, "v4": 24.100, "amplitude": 35.168, "phase_angle": 23.799, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.850, "filter_rmsd": 0.068, "frame": { "rmsd": 0.012, "origin": [ 213.339, 243.927, 189.223 ], "x_axis": [ -0.285, 0.958, 0.017 ], "y_axis": [ -0.816, -0.233, -0.528 ], "z_axis": [ -0.502, -0.164, 0.849 ], "quaternion": [ 0.577, -0.158, -0.225, 0.769 ] } }, { "index": 2057, "index_chain": 2057, "chain_name": "A", "nt_resnum": 2231, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2231", "linked_nts": [ "///A/2230", "///A/2232" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart", "alpha": 116.769, "beta": -137.549, "gamma": -172.085, "delta": 84.338, "epsilon": -72.631, "zeta": -160.156, "epsilon_zeta": 87.526, "bb_type": "BII", "chi": 179.897, "glyco_bond": "anti", "C5prime_xyz": [ -1.339, 8.401, 1.703 ], "P_xyz": [ 0.347, 9.985, 0.503 ], "form": ".", "ssZp": 4.293, "Dp": 4.489, "splay_angle": 146.120, "splay_distance": 17.605, "splay_ratio": 0.957, "d22": null, "d64": null, "eta": 159.808, "theta": 133.149, "eta_prime": 172.210, "theta_prime": 121.338, "eta_base": -149.035, "theta_base": 74.064, "v0": 3.083, "v1": -23.911, "v2": 34.457, "v3": -33.616, "v4": 19.284, "amplitude": 35.470, "phase_angle": 13.728, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.006, "origin": [ 213.103, 244.424, 192.528 ], "x_axis": [ -0.633, 0.683, -0.364 ], "y_axis": [ -0.577, -0.730, -0.366 ], "z_axis": [ -0.515, -0.022, 0.857 ], "quaternion": [ 0.351, -0.245, -0.108, 0.897 ] } }, { "index": 2058, "index_chain": 2058, "chain_name": "A", "nt_resnum": 2232, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2232", "linked_nts": [ "///A/2231", "///A/2233" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,BII,non-stack,non-pair-contact,bulge,cap-acceptor,splayed-apart", "alpha": -102.623, "beta": 125.588, "gamma": -70.608, "delta": 143.610, "epsilon": -137.840, "zeta": 165.741, "epsilon_zeta": 56.419, "bb_type": "BII", "chi": 74.017, "glyco_bond": "syn", "C5prime_xyz": [ -5.279, 4.675, 1.829 ], "P_xyz": [ -7.781, 4.054, 1.373 ], "form": ".", "ssZp": -1.835, "Dp": 1.803, "splay_angle": 142.267, "splay_distance": 18.666, "splay_ratio": 0.946, "d22": null, "d64": null, "eta": 44.373, "theta": 98.647, "eta_prime": 40.160, "theta_prime": 90.240, "eta_base": 54.833, "theta_base": -4.861, "v0": -26.641, "v1": 38.873, "v2": -35.517, "v3": 21.102, "v4": 3.283, "amplitude": 38.751, "phase_angle": 156.427, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 208.199, 227.534, 193.323 ], "x_axis": [ 0.123, -0.938, 0.323 ], "y_axis": [ 0.595, 0.330, 0.733 ], "z_axis": [ -0.795, 0.102, 0.599 ], "quaternion": [ 0.716, 0.220, -0.390, -0.535 ] } }, { "index": 2059, "index_chain": 2059, "chain_name": "A", "nt_resnum": 2233, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2233", "linked_nts": [ "///A/2232", "///A/2234" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart", "alpha": -80.389, "beta": -132.617, "gamma": -177.000, "delta": 81.084, "epsilon": -151.754, "zeta": -78.296, "epsilon_zeta": -73.458, "bb_type": "BI", "chi": -172.576, "glyco_bond": "anti", "C5prime_xyz": [ -1.236, 8.572, 1.286 ], "P_xyz": [ 0.291, 9.889, -0.374 ], "form": "A", "ssZp": 4.626, "Dp": 4.629, "splay_angle": 24.151, "splay_distance": 3.675, "splay_ratio": 0.210, "d22": 4.493, "d64": 4.532, "eta": 6.736, "theta": -172.261, "eta_prime": 7.152, "theta_prime": -172.948, "eta_base": 115.205, "theta_base": -148.865, "v0": 2.936, "v1": -24.968, "v2": 36.264, "v3": -35.561, "v4": 20.593, "amplitude": 37.407, "phase_angle": 14.204, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.005, "origin": [ 213.268, 245.173, 196.725 ], "x_axis": [ -0.852, -0.019, -0.523 ], "y_axis": [ 0.035, -0.999, -0.020 ], "z_axis": [ -0.523, -0.036, 0.852 ], "quaternion": [ -0.014, -0.272, -0.015, 0.962 ] } }, { "index": 2060, "index_chain": 2060, "chain_name": "A", "nt_resnum": 2234, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2234", "linked_nts": [ "///A/2233", "///A/2235" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -58.931, "beta": 171.240, "gamma": 52.308, "delta": 83.037, "epsilon": -156.844, "zeta": -70.972, "epsilon_zeta": -85.872, "bb_type": "BI", "chi": -171.533, "glyco_bond": "anti", "C5prime_xyz": [ -1.150, 8.554, 1.222 ], "P_xyz": [ 1.413, 8.624, 1.752 ], "form": "A", "ssZp": 4.544, "Dp": 4.573, "splay_angle": 21.097, "splay_distance": 3.569, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 170.877, "theta": -124.132, "eta_prime": -176.613, "theta_prime": -136.105, "eta_base": -139.529, "theta_base": -120.541, "v0": 3.956, "v1": -25.226, "v2": 35.721, "v3": -34.419, "v4": 19.208, "amplitude": 36.594, "phase_angle": 12.536, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.932, "filter_rmsd": 0.066, "frame": { "rmsd": 0.007, "origin": [ 211.503, 246.767, 199.527 ], "x_axis": [ -0.684, -0.534, -0.496 ], "y_axis": [ 0.493, -0.840, 0.225 ], "z_axis": [ -0.537, -0.091, 0.839 ], "quaternion": [ -0.280, -0.282, 0.037, 0.917 ] } }, { "index": 2061, "index_chain": 2061, "chain_name": "A", "nt_resnum": 2235, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2235", "linked_nts": [ "///A/2234", "///A/2236" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 175.612, "beta": -175.385, "gamma": 152.402, "delta": 83.115, "epsilon": -122.520, "zeta": -93.755, "epsilon_zeta": -28.766, "bb_type": "--", "chi": 172.402, "glyco_bond": "anti", "C5prime_xyz": [ -1.347, 8.144, 2.108 ], "P_xyz": [ 0.756, 9.631, 1.686 ], "form": "A", "ssZp": 4.697, "Dp": 4.730, "splay_angle": 23.092, "splay_distance": 3.523, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 154.087, "theta": -162.146, "eta_prime": 168.460, "theta_prime": -156.605, "eta_base": -154.256, "theta_base": -128.271, "v0": 4.863, "v1": -25.603, "v2": 35.456, "v3": -33.688, "v4": 18.185, "amplitude": 36.132, "phase_angle": 11.098, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.083, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 208.509, 248.077, 200.962 ], "x_axis": [ -0.152, -0.843, -0.516 ], "y_axis": [ 0.754, -0.437, 0.490 ], "z_axis": [ -0.639, -0.315, 0.702 ], "quaternion": [ 0.528, 0.382, -0.058, -0.757 ] } }, { "index": 2062, "index_chain": 2062, "chain_name": "A", "nt_resnum": 2236, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2236", "linked_nts": [ "///A/2235", "///A/2237" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -52.220, "beta": 160.958, "gamma": 46.461, "delta": 82.960, "epsilon": -153.496, "zeta": -69.447, "epsilon_zeta": -84.050, "bb_type": "BI", "chi": -168.361, "glyco_bond": "anti", "C5prime_xyz": [ -1.272, 8.626, 1.046 ], "P_xyz": [ 1.306, 8.725, 1.465 ], "form": "A", "ssZp": 4.521, "Dp": 4.575, "splay_angle": 20.718, "splay_distance": 3.265, "splay_ratio": 0.182, "d22": 4.408, "d64": 4.204, "eta": 164.028, "theta": -141.680, "eta_prime": 178.269, "theta_prime": -141.429, "eta_base": -142.544, "theta_base": -117.600, "v0": 2.709, "v1": -24.205, "v2": 35.318, "v3": -34.758, "v4": 20.206, "amplitude": 36.475, "phase_angle": 14.470, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.406, "filter_rmsd": 0.060, "frame": { "rmsd": 0.006, "origin": [ 205.213, 247.643, 202.128 ], "x_axis": [ 0.363, -0.915, -0.177 ], "y_axis": [ 0.681, 0.130, 0.721 ], "z_axis": [ -0.636, -0.382, 0.670 ], "quaternion": [ 0.735, 0.375, -0.156, -0.542 ] } }, { "index": 2063, "index_chain": 2063, "chain_name": "A", "nt_resnum": 2237, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2237", "linked_nts": [ "///A/2236", "///A/2238" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor", "alpha": -69.986, "beta": -178.574, "gamma": 54.240, "delta": 84.761, "epsilon": -153.780, "zeta": -70.787, "epsilon_zeta": -82.993, "bb_type": "BI", "chi": -156.107, "glyco_bond": "anti", "C5prime_xyz": [ -1.278, 8.750, 0.317 ], "P_xyz": [ 1.283, 9.106, 0.720 ], "form": "A", "ssZp": 4.232, "Dp": 4.506, "splay_angle": 20.721, "splay_distance": 3.405, "splay_ratio": 0.181, "d22": 4.798, "d64": 4.658, "eta": 169.874, "theta": -144.623, "eta_prime": -176.751, "theta_prime": -144.943, "eta_base": -138.407, "theta_base": -129.139, "v0": 1.713, "v1": -22.245, "v2": 33.089, "v3": -33.068, "v4": 19.796, "amplitude": 34.396, "phase_angle": 15.847, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.924, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 202.643, 245.773, 202.879 ], "x_axis": [ 0.735, -0.645, 0.209 ], "y_axis": [ 0.283, 0.573, 0.769 ], "z_axis": [ -0.616, -0.506, 0.603 ], "quaternion": [ 0.853, 0.374, -0.242, -0.272 ] } }, { "index": 2064, "index_chain": 2064, "chain_name": "A", "nt_resnum": 2238, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2238", "linked_nts": [ "///A/2237", "///A/2239" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate", "alpha": -68.407, "beta": 176.638, "gamma": 54.890, "delta": 79.308, "epsilon": -157.252, "zeta": 53.115, "epsilon_zeta": 149.633, "bb_type": "--", "chi": -143.339, "glyco_bond": "anti", "C5prime_xyz": [ -1.474, 8.865, -0.514 ], "P_xyz": [ 1.035, 9.515, -0.831 ], "form": ".", "ssZp": 3.850, "Dp": 4.514, "splay_angle": 19.201, "splay_distance": 3.092, "splay_ratio": 0.169, "d22": 3.725, "d64": 4.288, "eta": 167.843, "theta": -31.031, "eta_prime": -179.634, "theta_prime": -71.936, "eta_base": -151.588, "theta_base": -101.385, "v0": -2.412, "v1": -20.913, "v2": 34.938, "v3": -37.287, "v4": 25.056, "amplitude": 37.730, "phase_angle": 22.182, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.947, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 200.486, 243.269, 203.696 ], "x_axis": [ 0.788, -0.322, 0.525 ], "y_axis": [ -0.196, 0.677, 0.709 ], "z_axis": [ -0.583, -0.662, 0.470 ], "quaternion": [ 0.857, 0.400, -0.324, -0.037 ] } }, { "index": 2065, "index_chain": 2065, "chain_name": "A", "nt_resnum": 2239, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2239", "linked_nts": [ "///A/2238", "///A/2240" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 165.551, "beta": 140.218, "gamma": 56.543, "delta": 148.771, "epsilon": -98.815, "zeta": 130.290, "epsilon_zeta": 130.895, "bb_type": "BII", "chi": -142.271, "glyco_bond": "anti", "C5prime_xyz": [ -2.065, 8.721, -0.036 ], "P_xyz": [ 0.437, 8.890, 0.735 ], "form": ".", "ssZp": 0.776, "Dp": 0.850, "splay_angle": 91.166, "splay_distance": 13.701, "splay_ratio": 0.714, "d22": 7.476, "d64": 9.274, "eta": 54.506, "theta": 166.107, "eta_prime": 126.647, "theta_prime": 116.624, "eta_base": 132.907, "theta_base": 76.001, "v0": -23.903, "v1": 38.462, "v2": -37.428, "v3": 24.624, "v4": -0.645, "amplitude": 39.321, "phase_angle": 162.150, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.892, "filter_rmsd": 0.100, "frame": { "rmsd": 0.008, "origin": [ 200.386, 241.367, 206.132 ], "x_axis": [ -0.557, 0.109, -0.823 ], "y_axis": [ -0.645, 0.567, 0.512 ], "z_axis": [ 0.523, 0.817, -0.245 ], "quaternion": [ 0.437, -0.174, 0.770, 0.432 ] } }, { "index": 2066, "index_chain": 2066, "chain_name": "A", "nt_resnum": 2240, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2240", "linked_nts": [ "///A/2239", "///A/2241" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BI,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 128.485, "beta": -150.083, "gamma": 63.758, "delta": 146.460, "epsilon": -146.886, "zeta": -73.551, "epsilon_zeta": -73.335, "bb_type": "BI", "chi": -105.787, "glyco_bond": "anti", "C5prime_xyz": [ -2.139, 8.183, -1.908 ], "P_xyz": [ 0.213, 9.257, -1.457 ], "form": ".", "ssZp": 1.873, "Dp": 1.919, "splay_angle": 54.570, "splay_distance": 9.298, "splay_ratio": 0.459, "d22": null, "d64": null, "eta": 79.242, "theta": -62.782, "eta_prime": 84.101, "theta_prime": -98.020, "eta_base": 66.981, "theta_base": -81.789, "v0": -21.386, "v1": 35.065, "v2": -34.559, "v3": 23.119, "v4": -1.245, "amplitude": 36.097, "phase_angle": 163.213, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 192.514, 239.710, 217.223 ], "x_axis": [ -0.632, 0.609, -0.480 ], "y_axis": [ 0.774, 0.521, -0.359 ], "z_axis": [ 0.031, -0.598, -0.801 ], "quaternion": [ 0.149, 0.402, 0.859, -0.279 ] } }, { "index": 2067, "index_chain": 2067, "chain_name": "A", "nt_resnum": 2241, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2241", "linked_nts": [ "///A/2240", "///A/2242" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,splayed-apart", "alpha": 153.967, "beta": 149.964, "gamma": 174.973, "delta": 148.489, "epsilon": -98.770, "zeta": -114.711, "epsilon_zeta": 15.941, "bb_type": "--", "chi": -135.335, "glyco_bond": "anti", "C5prime_xyz": [ -1.647, 8.601, -0.340 ], "P_xyz": [ -0.330, 10.177, -1.959 ], "form": ".", "ssZp": 0.986, "Dp": 0.999, "splay_angle": 144.702, "splay_distance": 18.541, "splay_ratio": 0.953, "d22": null, "d64": null, "eta": 178.265, "theta": -120.002, "eta_prime": -159.213, "theta_prime": -153.438, "eta_base": -135.720, "theta_base": 172.804, "v0": -19.192, "v1": 34.228, "v2": -35.261, "v3": 25.090, "v4": -3.914, "amplitude": 36.142, "phase_angle": 167.320, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.012, "origin": [ 194.715, 239.619, 208.189 ], "x_axis": [ -0.272, 0.931, 0.241 ], "y_axis": [ 0.825, 0.097, 0.557 ], "z_axis": [ 0.496, 0.351, -0.794 ], "quaternion": [ 0.087, 0.597, 0.735, 0.309 ] } }, { "index": 2068, "index_chain": 2068, "chain_name": "A", "nt_resnum": 2242, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2242", "linked_nts": [ "///A/2241", "///A/2243" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,hairpin-loop,splayed-apart", "alpha": 72.338, "beta": 162.594, "gamma": 58.642, "delta": 144.984, "epsilon": -88.368, "zeta": -110.695, "epsilon_zeta": 22.328, "bb_type": "--", "chi": -137.313, "glyco_bond": "anti", "C5prime_xyz": [ -1.998, 8.739, -0.353 ], "P_xyz": [ 0.419, 9.338, 0.478 ], "form": ".", "ssZp": 0.662, "Dp": 0.674, "splay_angle": 144.413, "splay_distance": 17.895, "splay_ratio": 0.952, "d22": 9.647, "d64": 12.299, "eta": -56.785, "theta": -44.782, "eta_prime": 10.539, "theta_prime": -64.287, "eta_base": 42.317, "theta_base": -32.007, "v0": -23.469, "v1": 36.675, "v2": -35.139, "v3": 22.501, "v4": 0.411, "amplitude": 37.251, "phase_angle": 160.615, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "4p", "suiteness": 0.125, "filter_rmsd": 0.103, "frame": { "rmsd": 0.004, "origin": [ 209.504, 228.436, 208.143 ], "x_axis": [ 0.066, -0.218, 0.974 ], "y_axis": [ -0.604, 0.768, 0.212 ], "z_axis": [ -0.794, -0.603, -0.081 ], "quaternion": [ 0.662, 0.308, -0.668, 0.146 ] } }, { "index": 2069, "index_chain": 2069, "chain_name": "A", "nt_resnum": 2243, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2243", "linked_nts": [ "///A/2242", "///A/2244" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,splayed-apart", "alpha": 45.683, "beta": 132.906, "gamma": 5.404, "delta": 80.036, "epsilon": -138.667, "zeta": -59.241, "epsilon_zeta": -79.425, "bb_type": "BI", "chi": -174.048, "glyco_bond": "anti", "C5prime_xyz": [ -1.324, 8.580, 1.339 ], "P_xyz": [ 0.924, 8.332, 2.658 ], "form": ".", "ssZp": 4.676, "Dp": 4.702, "splay_angle": 30.227, "splay_distance": 4.684, "splay_ratio": 0.262, "d22": null, "d64": null, "eta": -178.811, "theta": -122.144, "eta_prime": -140.801, "theta_prime": -116.849, "eta_base": -133.963, "theta_base": -69.012, "v0": 2.124, "v1": -25.030, "v2": 37.134, "v3": -36.888, "v4": 21.917, "amplitude": 38.531, "phase_angle": 15.480, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.060, "frame": { "rmsd": 0.006, "origin": [ 196.321, 239.931, 204.361 ], "x_axis": [ 0.505, 0.544, 0.671 ], "y_axis": [ 0.673, -0.734, 0.088 ], "z_axis": [ 0.540, 0.407, -0.737 ], "quaternion": [ -0.093, 0.862, 0.353, 0.351 ] } }, { "index": 2070, "index_chain": 2070, "chain_name": "A", "nt_resnum": 2244, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2244", "linked_nts": [ "///A/2243", "///A/2245" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -68.184, "beta": 164.176, "gamma": 62.388, "delta": 78.490, "epsilon": -140.973, "zeta": -76.920, "epsilon_zeta": -64.053, "bb_type": "BI", "chi": -179.970, "glyco_bond": "anti", "C5prime_xyz": [ -1.473, 8.515, 1.631 ], "P_xyz": [ 1.090, 8.928, 1.926 ], "form": "A", "ssZp": 4.715, "Dp": 4.697, "splay_angle": 24.131, "splay_distance": 3.863, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 162.528, "theta": -144.046, "eta_prime": -171.915, "theta_prime": -143.271, "eta_base": -98.144, "theta_base": -120.661, "v0": 1.096, "v1": -24.346, "v2": 37.100, "v3": -37.466, "v4": 22.943, "amplitude": 38.800, "phase_angle": 17.027, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.764, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 199.872, 242.979, 204.171 ], "x_axis": [ 0.813, -0.265, 0.518 ], "y_axis": [ -0.016, -0.900, -0.435 ], "z_axis": [ 0.581, 0.346, -0.737 ], "quaternion": [ -0.210, 0.929, -0.076, 0.296 ] } }, { "index": 2071, "index_chain": 2071, "chain_name": "A", "nt_resnum": 2245, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2245", "linked_nts": [ "///A/2244", "///A/2246" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor", "alpha": -56.115, "beta": 165.846, "gamma": 54.440, "delta": 79.157, "epsilon": -152.567, "zeta": -76.235, "epsilon_zeta": -76.332, "bb_type": "BI", "chi": -175.775, "glyco_bond": "anti", "C5prime_xyz": [ -1.813, 8.611, 1.389 ], "P_xyz": [ 0.661, 9.217, 1.940 ], "form": "A", "ssZp": 4.562, "Dp": 4.573, "splay_angle": 22.856, "splay_distance": 3.596, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 169.482, "theta": -152.743, "eta_prime": -175.098, "theta_prime": -151.630, "eta_base": -134.571, "theta_base": -127.996, "v0": -0.773, "v1": -22.464, "v2": 35.832, "v3": -37.283, "v4": 23.993, "amplitude": 38.070, "phase_angle": 19.745, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.880, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 202.345, 245.788, 203.213 ], "x_axis": [ 0.667, -0.700, 0.253 ], "y_axis": [ -0.449, -0.650, -0.614 ], "z_axis": [ 0.594, 0.296, -0.748 ], "quaternion": [ -0.260, 0.875, -0.328, 0.242 ] } }, { "index": 2072, "index_chain": 2072, "chain_name": "A", "nt_resnum": 2246, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2246", "linked_nts": [ "///A/2245", "///A/2247" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -64.188, "beta": -179.146, "gamma": 48.483, "delta": 81.692, "epsilon": -172.802, "zeta": -80.968, "epsilon_zeta": -91.834, "bb_type": "BI", "chi": -164.505, "glyco_bond": "anti", "C5prime_xyz": [ -1.297, 8.696, 0.792 ], "P_xyz": [ 1.220, 9.069, 1.413 ], "form": "A", "ssZp": 4.404, "Dp": 4.436, "splay_angle": 25.258, "splay_distance": 4.019, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 167.627, "theta": -137.795, "eta_prime": 178.890, "theta_prime": -141.299, "eta_base": -143.931, "theta_base": -114.259, "v0": 2.197, "v1": -24.092, "v2": 35.697, "v3": -35.409, "v4": 20.941, "amplitude": 37.009, "phase_angle": 15.303, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.922, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 205.173, 247.823, 202.319 ], "x_axis": [ 0.273, -0.957, -0.094 ], "y_axis": [ -0.727, -0.141, -0.672 ], "z_axis": [ 0.630, 0.252, -0.734 ], "quaternion": [ -0.315, 0.733, -0.575, 0.183 ] } }, { "index": 2073, "index_chain": 2073, "chain_name": "A", "nt_resnum": 2247, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2247", "linked_nts": [ "///A/2246", "///A/2248" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 172.574, "beta": -146.119, "gamma": 156.060, "delta": 81.648, "epsilon": -109.763, "zeta": -95.504, "epsilon_zeta": -14.259, "bb_type": "--", "chi": 177.453, "glyco_bond": "anti", "C5prime_xyz": [ -1.293, 8.358, 1.847 ], "P_xyz": [ 1.013, 9.297, 1.074 ], "form": ".", "ssZp": 4.657, "Dp": 4.707, "splay_angle": 23.676, "splay_distance": 4.226, "splay_ratio": 0.218, "d22": null, "d64": null, "eta": 172.653, "theta": -125.856, "eta_prime": -174.251, "theta_prime": -139.132, "eta_base": -131.881, "theta_base": -120.811, "v0": 2.947, "v1": -24.575, "v2": 35.732, "v3": -35.008, "v4": 20.173, "amplitude": 36.845, "phase_angle": 14.118, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.176, "filter_rmsd": 0.066, "frame": { "rmsd": 0.007, "origin": [ 208.863, 247.952, 200.732 ], "x_axis": [ -0.192, -0.875, -0.445 ], "y_axis": [ -0.766, 0.417, -0.489 ], "z_axis": [ 0.613, 0.247, -0.750 ], "quaternion": [ 0.344, -0.534, 0.768, -0.079 ] } }, { "index": 2074, "index_chain": 2074, "chain_name": "A", "nt_resnum": 2248, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2248", "linked_nts": [ "///A/2247", "///A/2249" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 78.312, "beta": -134.655, "gamma": -124.766, "delta": 87.914, "epsilon": -121.797, "zeta": -106.675, "epsilon_zeta": -15.122, "bb_type": "--", "chi": 175.112, "glyco_bond": "anti", "C5prime_xyz": [ -0.784, 7.887, 1.992 ], "P_xyz": [ 0.266, 10.262, 1.784 ], "form": "A", "ssZp": 4.810, "Dp": 4.812, "splay_angle": 22.089, "splay_distance": 3.587, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 164.540, "theta": -156.948, "eta_prime": 175.426, "theta_prime": -153.054, "eta_base": -141.651, "theta_base": -114.588, "v0": 12.631, "v1": -30.494, "v2": 35.917, "v3": -29.671, "v4": 10.826, "amplitude": 35.927, "phase_angle": 358.638, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.017, "frame": { "rmsd": 0.017, "origin": [ 212.421, 246.644, 198.863 ], "x_axis": [ -0.585, -0.581, -0.566 ], "y_axis": [ -0.597, 0.781, -0.183 ], "z_axis": [ 0.548, 0.231, -0.804 ], "quaternion": [ 0.313, -0.331, 0.890, 0.013 ] } }, { "index": 2075, "index_chain": 2075, "chain_name": "A", "nt_resnum": 2249, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2249", "linked_nts": [ "///A/2248", "///A/2250" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": 137.152, "beta": -127.809, "gamma": 174.816, "delta": 81.548, "epsilon": -124.603, "zeta": -73.008, "epsilon_zeta": -51.595, "bb_type": "--", "chi": 171.283, "glyco_bond": "anti", "C5prime_xyz": [ -1.399, 8.104, 2.142 ], "P_xyz": [ 0.531, 9.419, 0.970 ], "form": ".", "ssZp": 4.803, "Dp": 4.793, "splay_angle": 27.372, "splay_distance": 4.274, "splay_ratio": 0.243, "d22": null, "d64": null, "eta": 151.614, "theta": -139.407, "eta_prime": 177.139, "theta_prime": -140.036, "eta_base": -129.185, "theta_base": -100.359, "v0": 5.681, "v1": -27.045, "v2": 37.043, "v3": -34.761, "v4": 18.365, "amplitude": 37.631, "phase_angle": 10.145, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 213.861, 244.907, 196.074 ], "x_axis": [ -0.838, -0.028, -0.545 ], "y_axis": [ -0.078, 0.995, 0.069 ], "z_axis": [ 0.540, 0.101, -0.835 ], "quaternion": [ 0.283, -0.028, 0.958, 0.044 ] } }, { "index": 2076, "index_chain": 2076, "chain_name": "A", "nt_resnum": 2250, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2250", "linked_nts": [ "///A/2249", "///A/2251" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -50.258, "beta": 167.896, "gamma": 43.737, "delta": 80.089, "epsilon": -146.216, "zeta": -82.775, "epsilon_zeta": -63.440, "bb_type": "BI", "chi": -170.356, "glyco_bond": "anti", "C5prime_xyz": [ -1.642, 8.635, 1.126 ], "P_xyz": [ 0.841, 9.084, 1.777 ], "form": "A", "ssZp": 4.602, "Dp": 4.642, "splay_angle": 21.509, "splay_distance": 3.435, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 163.221, "theta": -149.883, "eta_prime": -175.038, "theta_prime": -146.648, "eta_base": -112.038, "theta_base": -121.112, "v0": 1.005, "v1": -23.842, "v2": 36.354, "v3": -36.811, "v4": 22.565, "amplitude": 38.046, "phase_angle": 17.150, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.542, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 213.445, 244.208, 191.878 ], "x_axis": [ -0.637, 0.713, -0.293 ], "y_axis": [ 0.557, 0.689, 0.464 ], "z_axis": [ 0.533, 0.132, -0.836 ], "quaternion": [ 0.232, 0.357, 0.889, 0.168 ] } }, { "index": 2077, "index_chain": 2077, "chain_name": "A", "nt_resnum": 2251, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2251", "linked_nts": [ "///A/2250", "///A/2252" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -46.363, "beta": 163.965, "gamma": 47.434, "delta": 82.219, "epsilon": -169.545, "zeta": -92.518, "epsilon_zeta": -77.027, "bb_type": "BI", "chi": -162.183, "glyco_bond": "anti", "C5prime_xyz": [ -1.609, 8.793, 0.668 ], "P_xyz": [ 0.914, 9.251, 1.153 ], "form": ".", "ssZp": 4.233, "Dp": 4.331, "splay_angle": 21.330, "splay_distance": 3.314, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": 171.835, "theta": -135.998, "eta_prime": -173.019, "theta_prime": -141.343, "eta_base": -134.220, "theta_base": -100.001, "v0": -1.367, "v1": -20.399, "v2": 33.182, "v3": -34.964, "v4": 22.917, "amplitude": 35.502, "phase_angle": 20.827, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.636, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 213.568, 243.899, 188.459 ], "x_axis": [ -0.288, 0.956, 0.062 ], "y_axis": [ 0.843, 0.222, 0.489 ], "z_axis": [ 0.454, 0.193, -0.870 ], "quaternion": [ 0.127, 0.583, 0.771, 0.221 ] } }, { "index": 2078, "index_chain": 2078, "chain_name": "A", "nt_resnum": 2252, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2252", "linked_nts": [ "///A/2251", "///A/2253" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,cap-acceptor", "alpha": 167.843, "beta": -129.963, "gamma": 143.058, "delta": 80.054, "epsilon": -101.894, "zeta": -88.104, "epsilon_zeta": -13.790, "bb_type": "--", "chi": -176.810, "glyco_bond": "anti", "C5prime_xyz": [ -1.529, 8.451, 1.485 ], "P_xyz": [ 0.802, 8.915, 0.425 ], "form": ".", "ssZp": 4.625, "Dp": 4.762, "splay_angle": 25.652, "splay_distance": 4.935, "splay_ratio": 0.245, "d22": null, "d64": null, "eta": 161.795, "theta": -105.555, "eta_prime": 177.341, "theta_prime": -115.077, "eta_base": -124.675, "theta_base": -102.439, "v0": 2.514, "v1": -25.308, "v2": 37.256, "v3": -36.836, "v4": 21.630, "amplitude": 38.564, "phase_angle": 14.963, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 214.254, 245.609, 185.705 ], "x_axis": [ 0.326, 0.880, 0.345 ], "y_axis": [ 0.867, -0.424, 0.261 ], "z_axis": [ 0.376, 0.214, -0.901 ], "quaternion": [ 0.014, 0.814, 0.536, 0.222 ] } }, { "index": 2079, "index_chain": 2079, "chain_name": "A", "nt_resnum": 2253, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2253", "linked_nts": [ "///A/2252", "///A/2254" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,cap-donor", "alpha": 74.216, "beta": -105.641, "gamma": -94.951, "delta": 145.223, "epsilon": -145.657, "zeta": -17.281, "epsilon_zeta": -128.376, "bb_type": "--", "chi": -173.744, "glyco_bond": "anti", "C5prime_xyz": [ -2.069, 8.323, 1.657 ], "P_xyz": [ -1.942, 10.897, 1.222 ], "form": ".", "ssZp": 1.276, "Dp": 1.859, "splay_angle": 48.470, "splay_distance": 7.508, "splay_ratio": 0.411, "d22": null, "d64": null, "eta": -125.055, "theta": -94.614, "eta_prime": -115.879, "theta_prime": -146.935, "eta_base": -81.981, "theta_base": -170.382, "v0": -20.266, "v1": 33.983, "v2": -33.965, "v3": 23.155, "v4": -1.993, "amplitude": 35.256, "phase_angle": 164.443, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 214.827, 250.027, 183.582 ], "x_axis": [ 0.587, 0.541, 0.602 ], "y_axis": [ 0.628, -0.773, 0.083 ], "z_axis": [ 0.510, 0.330, -0.794 ], "quaternion": [ -0.069, 0.888, 0.329, 0.313 ] } }, { "index": 2080, "index_chain": 2080, "chain_name": "A", "nt_resnum": 2254, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2254", "linked_nts": [ "///A/2253", "///A/2255" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,cap-donor,phosphate", "alpha": 164.247, "beta": 59.782, "gamma": 153.995, "delta": 149.689, "epsilon": -144.122, "zeta": 95.391, "epsilon_zeta": 120.487, "bb_type": "--", "chi": -126.046, "glyco_bond": "anti", "C5prime_xyz": [ -1.855, 8.580, -0.844 ], "P_xyz": [ -1.589, 8.169, -3.427 ], "form": ".", "ssZp": 1.655, "Dp": 1.692, "splay_angle": 66.863, "splay_distance": 10.732, "splay_ratio": 0.551, "d22": null, "d64": null, "eta": 141.308, "theta": -11.775, "eta_prime": 163.209, "theta_prime": 17.141, "eta_base": 153.920, "theta_base": 33.068, "v0": -21.045, "v1": 36.373, "v2": -36.936, "v3": 25.764, "v4": -3.175, "amplitude": 38.077, "phase_angle": 165.935, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.010, "origin": [ 210.016, 248.782, 177.954 ], "x_axis": [ 0.479, 0.717, 0.506 ], "y_axis": [ 0.861, -0.496, -0.112 ], "z_axis": [ 0.171, 0.489, -0.855 ], "quaternion": [ -0.179, 0.841, 0.469, 0.201 ] } }, { "index": 2081, "index_chain": 2081, "chain_name": "A", "nt_resnum": 2255, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2255", "linked_nts": [ "///A/2254", "///A/2256" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,cap-acceptor,phosphate", "alpha": 66.144, "beta": -131.349, "gamma": -177.973, "delta": 80.916, "epsilon": -143.548, "zeta": -49.474, "epsilon_zeta": -94.075, "bb_type": "BI", "chi": -167.836, "glyco_bond": "anti", "C5prime_xyz": [ -1.197, 8.616, 1.005 ], "P_xyz": [ 0.230, 9.808, -0.842 ], "form": ".", "ssZp": 4.600, "Dp": 4.696, "splay_angle": 32.783, "splay_distance": 5.025, "splay_ratio": 0.283, "d22": null, "d64": null, "eta": 137.500, "theta": -138.383, "eta_prime": 142.598, "theta_prime": -138.286, "eta_base": 152.453, "theta_base": -88.884, "v0": 5.362, "v1": -27.568, "v2": 38.132, "v3": -36.014, "v4": 19.292, "amplitude": 38.819, "phase_angle": 10.795, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "6n", "suiteness": 0.010, "filter_rmsd": 0.068, "frame": { "rmsd": 0.007, "origin": [ 212.325, 239.162, 182.116 ], "x_axis": [ -0.803, 0.597, 0.005 ], "y_axis": [ 0.123, 0.174, -0.977 ], "z_axis": [ -0.584, -0.784, -0.212 ], "quaternion": [ -0.199, 0.243, 0.740, -0.595 ] } }, { "index": 2082, "index_chain": 2082, "chain_name": "A", "nt_resnum": 2256, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2256", "linked_nts": [ "///A/2255", "///A/2257" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,phosphate", "alpha": -76.584, "beta": 168.127, "gamma": 68.316, "delta": 81.728, "epsilon": -110.454, "zeta": -79.281, "epsilon_zeta": -31.173, "bb_type": "--", "chi": -172.675, "glyco_bond": "anti", "C5prime_xyz": [ -1.441, 8.516, 1.255 ], "P_xyz": [ 1.153, 8.935, 1.246 ], "form": ".", "ssZp": 4.572, "Dp": 4.747, "splay_angle": 28.015, "splay_distance": 4.383, "splay_ratio": 0.242, "d22": null, "d64": null, "eta": 171.723, "theta": -120.385, "eta_prime": -161.647, "theta_prime": -117.204, "eta_base": -88.403, "theta_base": -61.528, "v0": 3.123, "v1": -24.893, "v2": 35.995, "v3": -35.200, "v4": 20.227, "amplitude": 37.080, "phase_angle": 13.898, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.451, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 207.544, 239.451, 180.596 ], "x_axis": [ -0.339, 0.471, -0.814 ], "y_axis": [ 0.707, -0.444, -0.551 ], "z_axis": [ -0.621, -0.762, -0.182 ], "quaternion": [ -0.093, -0.567, -0.519, 0.633 ] } }, { "index": 2083, "index_chain": 2083, "chain_name": "A", "nt_resnum": 2257, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2257", "linked_nts": [ "///A/2256", "///A/2258" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop", "alpha": -59.470, "beta": 148.264, "gamma": 58.895, "delta": 82.372, "epsilon": -148.665, "zeta": -60.433, "epsilon_zeta": -88.232, "bb_type": "BI", "chi": -163.530, "glyco_bond": "anti", "C5prime_xyz": [ -1.556, 8.759, 0.732 ], "P_xyz": [ 1.031, 9.029, 0.453 ], "form": "A", "ssZp": 4.427, "Dp": 4.558, "splay_angle": 22.568, "splay_distance": 3.638, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 151.203, "theta": -128.854, "eta_prime": -179.537, "theta_prime": -133.205, "eta_base": -100.219, "theta_base": -91.949, "v0": -0.142, "v1": -21.856, "v2": 34.215, "v3": -35.242, "v4": 22.313, "amplitude": 36.142, "phase_angle": 18.797, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.829, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 205.827, 238.882, 176.604 ], "x_axis": [ 0.569, 0.068, -0.820 ], "y_axis": [ 0.515, -0.806, 0.291 ], "z_axis": [ -0.641, -0.588, -0.493 ], "quaternion": [ 0.259, 0.847, 0.172, -0.431 ] } }, { "index": 2084, "index_chain": 2084, "chain_name": "A", "nt_resnum": 2258, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2258", "linked_nts": [ "///A/2257", "///A/2259" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -76.585, "beta": 166.434, "gamma": 66.381, "delta": 79.072, "epsilon": -121.068, "zeta": -95.649, "epsilon_zeta": -25.419, "bb_type": "--", "chi": -159.560, "glyco_bond": "anti", "C5prime_xyz": [ -1.649, 8.764, 0.482 ], "P_xyz": [ 0.847, 9.419, 0.054 ], "form": ".", "ssZp": 4.287, "Dp": 4.742, "splay_angle": 32.452, "splay_distance": 5.082, "splay_ratio": 0.280, "d22": null, "d64": null, "eta": 167.291, "theta": -147.582, "eta_prime": -173.520, "theta_prime": -144.779, "eta_base": -111.045, "theta_base": -122.103, "v0": 0.466, "v1": -23.690, "v2": 36.553, "v3": -37.266, "v4": 23.211, "amplitude": 38.411, "phase_angle": 17.893, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.634, "filter_rmsd": 0.098, "frame": { "rmsd": 0.008, "origin": [ 205.269, 237.675, 173.218 ], "x_axis": [ 0.729, -0.523, -0.441 ], "y_axis": [ -0.114, -0.729, 0.675 ], "z_axis": [ -0.675, -0.442, -0.591 ], "quaternion": [ 0.320, 0.873, -0.183, -0.320 ] } }, { "index": 2085, "index_chain": 2085, "chain_name": "A", "nt_resnum": 2259, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2259", "linked_nts": [ "///A/2258", "///A/2260" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -96.532, "beta": 177.682, "gamma": 65.047, "delta": 84.688, "epsilon": -177.347, "zeta": -79.331, "epsilon_zeta": -98.016, "bb_type": "BI", "chi": -177.582, "glyco_bond": "anti", "C5prime_xyz": [ -1.433, 8.429, 1.549 ], "P_xyz": [ 1.134, 8.628, 2.062 ], "form": "A", "ssZp": 4.288, "Dp": 4.365, "splay_angle": 21.943, "splay_distance": 3.368, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 148.268, "theta": -141.208, "eta_prime": 160.180, "theta_prime": -141.083, "eta_base": -163.692, "theta_base": -128.326, "v0": 3.503, "v1": -24.094, "v2": 34.321, "v3": -33.267, "v4": 18.788, "amplitude": 35.229, "phase_angle": 13.037, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.120, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 203.034, 234.967, 169.543 ], "x_axis": [ 0.861, -0.076, 0.502 ], "y_axis": [ -0.508, -0.166, 0.845 ], "z_axis": [ 0.019, -0.983, -0.182 ], "quaternion": [ 0.615, 0.743, -0.196, 0.175 ] } }, { "index": 2086, "index_chain": 2086, "chain_name": "A", "nt_resnum": 2260, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2260", "linked_nts": [ "///A/2259", "///A/2261" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -147.053, "beta": -128.540, "gamma": 104.823, "delta": 81.804, "epsilon": -174.611, "zeta": -91.555, "epsilon_zeta": -83.056, "bb_type": "BI", "chi": -158.798, "glyco_bond": "anti", "C5prime_xyz": [ -1.851, 8.829, 0.404 ], "P_xyz": [ 0.769, 8.972, 0.376 ], "form": "A", "ssZp": 4.185, "Dp": 4.261, "splay_angle": 22.756, "splay_distance": 3.561, "splay_ratio": 0.198, "d22": 4.723, "d64": 4.488, "eta": 160.844, "theta": -138.402, "eta_prime": 176.197, "theta_prime": -151.108, "eta_base": -155.449, "theta_base": -126.337, "v0": -4.195, "v1": -17.817, "v2": 31.687, "v3": -35.055, "v4": 24.706, "amplitude": 35.054, "phase_angle": 25.319, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.097, "frame": { "rmsd": 0.009, "origin": [ 204.018, 232.773, 167.184 ], "x_axis": [ 0.455, -0.123, 0.882 ], "y_axis": [ -0.875, -0.246, 0.418 ], "z_axis": [ 0.165, -0.962, -0.219 ], "quaternion": [ 0.498, 0.693, -0.360, 0.378 ] } }, { "index": 2087, "index_chain": 2087, "chain_name": "A", "nt_resnum": 2261, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2261", "linked_nts": [ "///A/2260", "///A/2262" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 176.025, "beta": -149.176, "gamma": 146.553, "delta": 84.674, "epsilon": -141.539, "zeta": -103.411, "epsilon_zeta": -38.128, "bb_type": "BI", "chi": -173.959, "glyco_bond": "anti", "C5prime_xyz": [ -1.057, 8.395, 1.368 ], "P_xyz": [ 1.187, 9.030, 0.184 ], "form": ".", "ssZp": 4.686, "Dp": 4.711, "splay_angle": 34.734, "splay_distance": 4.986, "splay_ratio": 0.299, "d22": null, "d64": null, "eta": 155.978, "theta": -139.132, "eta_prime": 170.551, "theta_prime": -133.568, "eta_base": -142.435, "theta_base": -103.751, "v0": 7.278, "v1": -27.574, "v2": 36.225, "v3": -33.058, "v4": 16.264, "amplitude": 36.529, "phase_angle": 7.395, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 205.755, 229.795, 166.291 ], "x_axis": [ -0.121, -0.261, 0.958 ], "y_axis": [ -0.964, -0.198, -0.176 ], "z_axis": [ 0.236, -0.945, -0.227 ], "quaternion": [ 0.337, 0.571, -0.536, 0.523 ] } }, { "index": 2088, "index_chain": 2088, "chain_name": "A", "nt_resnum": 2262, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2262", "linked_nts": [ "///A/2261", "///A/2263" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-pair-contact,internal-loop", "alpha": -151.336, "beta": -133.206, "gamma": 125.998, "delta": 144.216, "epsilon": -138.057, "zeta": -114.597, "epsilon_zeta": -23.460, "bb_type": "--", "chi": 177.947, "glyco_bond": "--", "C5prime_xyz": [ -2.266, 8.061, 2.016 ], "P_xyz": [ 0.083, 7.529, 3.055 ], "form": ".", "ssZp": 1.260, "Dp": 1.899, "splay_angle": 36.866, "splay_distance": 6.084, "splay_ratio": 0.318, "d22": null, "d64": null, "eta": 161.681, "theta": -90.587, "eta_prime": -165.589, "theta_prime": -137.542, "eta_base": -124.010, "theta_base": -130.923, "v0": -20.632, "v1": 33.781, "v2": -33.171, "v3": 22.142, "v4": -1.116, "amplitude": 34.681, "phase_angle": 163.029, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.035, "frame": { "rmsd": 0.010, "origin": [ 206.388, 224.947, 167.268 ], "x_axis": [ -0.532, 0.720, 0.447 ], "y_axis": [ -0.404, 0.248, -0.881 ], "z_axis": [ -0.744, -0.649, 0.159 ], "quaternion": [ -0.468, 0.124, 0.636, -0.601 ] } }, { "index": 2089, "index_chain": 2089, "chain_name": "A", "nt_resnum": 2263, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2263", "linked_nts": [ "///A/2262", "///A/2264" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 167.663, "beta": 178.618, "gamma": 145.108, "delta": 85.120, "epsilon": 162.887, "zeta": 45.498, "epsilon_zeta": 117.389, "bb_type": "--", "chi": -172.205, "glyco_bond": "anti", "C5prime_xyz": [ -1.304, 8.514, 1.281 ], "P_xyz": [ 0.684, 9.853, 0.222 ], "form": ".", "ssZp": 3.997, "Dp": 4.085, "splay_angle": 17.497, "splay_distance": 3.122, "splay_ratio": 0.168, "d22": null, "d64": null, "eta": 139.337, "theta": -108.289, "eta_prime": 167.037, "theta_prime": -143.602, "eta_base": -159.154, "theta_base": -132.425, "v0": 3.429, "v1": -22.668, "v2": 32.085, "v3": -31.098, "v4": 17.529, "amplitude": 32.910, "phase_angle": 12.853, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 207.930, 219.207, 168.568 ], "x_axis": [ -0.944, 0.305, 0.125 ], "y_axis": [ -0.075, 0.168, -0.983 ], "z_axis": [ -0.321, -0.937, -0.136 ], "quaternion": [ -0.149, 0.077, 0.750, -0.640 ] } }, { "index": 2090, "index_chain": 2090, "chain_name": "A", "nt_resnum": 2264, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2264", "linked_nts": [ "///A/2263", "///A/2265" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": 171.284, "beta": 81.610, "gamma": 147.317, "delta": 84.275, "epsilon": 143.672, "zeta": 43.577, "epsilon_zeta": 100.096, "bb_type": "--", "chi": -172.615, "glyco_bond": "anti", "C5prime_xyz": [ -0.988, 8.397, 1.358 ], "P_xyz": [ -0.657, 9.912, -0.738 ], "form": ".", "ssZp": 3.709, "Dp": 3.881, "splay_angle": 32.034, "splay_distance": 5.176, "splay_ratio": 0.280, "d22": null, "d64": null, "eta": -178.068, "theta": -173.355, "eta_prime": 179.599, "theta_prime": -138.615, "eta_base": -149.384, "theta_base": -74.730, "v0": 7.754, "v1": -26.625, "v2": 34.303, "v3": -30.862, "v4": 14.744, "amplitude": 34.496, "phase_angle": 6.071, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 206.810, 217.017, 170.491 ], "x_axis": [ -0.853, 0.386, -0.351 ], "y_axis": [ 0.278, -0.233, -0.932 ], "z_axis": [ -0.441, -0.893, 0.091 ], "quaternion": [ 0.036, -0.269, -0.618, 0.738 ] } }, { "index": 2091, "index_chain": 2091, "chain_name": "A", "nt_resnum": 2265, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2265", "linked_nts": [ "///A/2264", "///A/2266" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop,phosphate", "alpha": -140.940, "beta": 172.802, "gamma": 58.956, "delta": 77.591, "epsilon": -135.941, "zeta": -79.307, "epsilon_zeta": -56.634, "bb_type": "BI", "chi": -142.670, "glyco_bond": "anti", "C5prime_xyz": [ -1.894, 8.831, -0.547 ], "P_xyz": [ 0.519, 9.626, -1.123 ], "form": ".", "ssZp": 3.631, "Dp": 4.629, "splay_angle": 19.285, "splay_distance": 3.234, "splay_ratio": 0.168, "d22": null, "d64": null, "eta": 138.284, "theta": -162.541, "eta_prime": 179.064, "theta_prime": -163.660, "eta_base": -96.187, "theta_base": -161.195, "v0": -3.808, "v1": -20.445, "v2": 35.540, "v3": -38.696, "v4": 26.848, "amplitude": 38.931, "phase_angle": 24.091, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.099, "frame": { "rmsd": 0.008, "origin": [ 202.735, 215.385, 167.749 ], "x_axis": [ -0.174, -0.154, -0.973 ], "y_axis": [ 0.798, -0.601, -0.048 ], "z_axis": [ -0.577, -0.784, 0.228 ], "quaternion": [ -0.336, -0.547, -0.294, 0.708 ] } }, { "index": 2092, "index_chain": 2092, "chain_name": "A", "nt_resnum": 2266, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2266", "linked_nts": [ "///A/2265", "///A/2267" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor", "alpha": -82.891, "beta": 98.225, "gamma": 156.013, "delta": 143.609, "epsilon": -113.464, "zeta": -46.641, "epsilon_zeta": -66.824, "bb_type": "--", "chi": -114.519, "glyco_bond": "anti", "C5prime_xyz": [ -1.744, 8.586, -1.486 ], "P_xyz": [ -1.662, 8.636, -4.110 ], "form": ".", "ssZp": 1.417, "Dp": 1.401, "splay_angle": 76.261, "splay_distance": 11.670, "splay_ratio": 0.623, "d22": null, "d64": null, "eta": -97.705, "theta": -95.498, "eta_prime": -118.105, "theta_prime": -82.236, "eta_base": -124.793, "theta_base": -34.839, "v0": -23.285, "v1": 36.377, "v2": -34.862, "v3": 22.201, "v4": 0.552, "amplitude": 36.985, "phase_angle": 160.491, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.018, "frame": { "rmsd": 0.018, "origin": [ 200.316, 213.658, 169.024 ], "x_axis": [ -0.472, -0.483, -0.738 ], "y_axis": [ 0.415, -0.860, 0.297 ], "z_axis": [ -0.778, -0.166, 0.606 ], "quaternion": [ -0.262, -0.442, 0.038, 0.857 ] } }, { "index": 2093, "index_chain": 2093, "chain_name": "A", "nt_resnum": 2267, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2267", "linked_nts": [ "///A/2266", "///A/2268" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-stack,non-pair-contact,internal-loop,phosphate", "alpha": 112.296, "beta": -168.242, "gamma": -153.508, "delta": 142.316, "epsilon": -59.432, "zeta": 93.750, "epsilon_zeta": 206.818, "bb_type": "--", "chi": 65.526, "glyco_bond": "syn", "C5prime_xyz": [ -5.475, 4.612, 1.498 ], "P_xyz": [ -6.456, 3.727, 3.772 ], "form": ".", "ssZp": -0.141, "Dp": 0.366, "splay_angle": 49.988, "splay_distance": 8.409, "splay_ratio": 0.423, "d22": null, "d64": null, "eta": -164.336, "theta": 70.523, "eta_prime": -138.791, "theta_prime": 69.943, "eta_base": -114.757, "theta_base": 72.479, "v0": -27.712, "v1": 39.195, "v2": -35.002, "v3": 19.983, "v4": 4.640, "amplitude": 38.805, "phase_angle": 154.422, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 205.916, 203.443, 169.704 ], "x_axis": [ -0.523, -0.265, -0.810 ], "y_axis": [ -0.821, -0.098, 0.562 ], "z_axis": [ -0.229, 0.959, -0.166 ], "quaternion": [ 0.231, -0.431, 0.631, 0.603 ] } }, { "index": 2094, "index_chain": 2094, "chain_name": "A", "nt_resnum": 2268, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2268", "linked_nts": [ "///A/2267", "///A/2269" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-acceptor", "alpha": 176.585, "beta": -178.864, "gamma": 57.847, "delta": 77.561, "epsilon": -160.181, "zeta": -68.089, "epsilon_zeta": -92.091, "bb_type": "BI", "chi": -156.664, "glyco_bond": "anti", "C5prime_xyz": [ -1.712, 8.891, 0.271 ], "P_xyz": [ 0.739, 9.795, 0.405 ], "form": "A", "ssZp": 4.311, "Dp": 4.521, "splay_angle": 17.897, "splay_distance": 2.951, "splay_ratio": 0.159, "d22": null, "d64": null, "eta": 115.508, "theta": -153.956, "eta_prime": 103.879, "theta_prime": -151.870, "eta_base": 138.034, "theta_base": -130.620, "v0": -1.805, "v1": -22.151, "v2": 36.292, "v3": -38.321, "v4": 25.305, "amplitude": 38.921, "phase_angle": 21.181, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6g", "suiteness": 0.130, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 199.419, 208.685, 170.711 ], "x_axis": [ 0.668, -0.589, -0.455 ], "y_axis": [ 0.239, -0.409, 0.881 ], "z_axis": [ -0.705, -0.697, -0.133 ], "quaternion": [ 0.530, 0.743, -0.118, -0.390 ] } }, { "index": 2095, "index_chain": 2095, "chain_name": "A", "nt_resnum": 2269, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2269", "linked_nts": [ "///A/2268", "///A/2270" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.052, "beta": -173.958, "gamma": 47.108, "delta": 81.867, "epsilon": -167.467, "zeta": -80.753, "epsilon_zeta": -86.714, "bb_type": "BI", "chi": -134.961, "glyco_bond": "anti", "C5prime_xyz": [ -1.543, 8.740, -0.936 ], "P_xyz": [ 0.973, 9.489, -0.951 ], "form": ".", "ssZp": 3.504, "Dp": 4.362, "splay_angle": 24.928, "splay_distance": 4.251, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 170.834, "theta": -136.001, "eta_prime": -178.387, "theta_prime": -142.139, "eta_base": -149.002, "theta_base": -125.166, "v0": -1.283, "v1": -20.231, "v2": 32.919, "v3": -34.610, "v4": 22.643, "amplitude": 35.193, "phase_angle": 20.711, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.812, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 197.738, 207.159, 168.825 ], "x_axis": [ 0.769, -0.637, 0.054 ], "y_axis": [ -0.305, -0.291, 0.907 ], "z_axis": [ -0.562, -0.714, -0.418 ], "quaternion": [ 0.515, 0.787, -0.299, -0.161 ] } }, { "index": 2096, "index_chain": 2096, "chain_name": "A", "nt_resnum": 2270, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2270", "linked_nts": [ "///A/2269", "///A/2271" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 156.733, "beta": -156.387, "gamma": 175.874, "delta": 81.725, "epsilon": -131.494, "zeta": -105.047, "epsilon_zeta": -26.447, "bb_type": "--", "chi": -150.164, "glyco_bond": "anti", "C5prime_xyz": [ -1.233, 8.724, -0.025 ], "P_xyz": [ 0.044, 9.819, -2.013 ], "form": ".", "ssZp": 3.950, "Dp": 4.675, "splay_angle": 24.018, "splay_distance": 3.811, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 169.418, "theta": -174.702, "eta_prime": -178.324, "theta_prime": -166.156, "eta_base": -149.511, "theta_base": -123.823, "v0": 2.406, "v1": -24.218, "v2": 35.684, "v3": -35.234, "v4": 20.729, "amplitude": 36.936, "phase_angle": 14.957, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.858, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 196.677, 203.729, 166.549 ], "x_axis": [ 0.636, -0.647, 0.421 ], "y_axis": [ -0.645, -0.145, 0.750 ], "z_axis": [ -0.424, -0.749, -0.509 ], "quaternion": [ 0.495, 0.757, -0.427, -0.001 ] } }, { "index": 2097, "index_chain": 2097, "chain_name": "A", "nt_resnum": 2271, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2271", "linked_nts": [ "///A/2270", "///A/2272" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -26.660, "beta": 133.551, "gamma": 48.782, "delta": 81.511, "epsilon": -100.230, "zeta": -45.166, "epsilon_zeta": -55.064, "bb_type": "--", "chi": -137.146, "glyco_bond": "anti", "C5prime_xyz": [ -1.495, 8.667, -0.837 ], "P_xyz": [ 0.902, 8.300, -1.785 ], "form": ".", "ssZp": 2.787, "Dp": 4.739, "splay_angle": 22.620, "splay_distance": 4.115, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": -172.984, "theta": -102.933, "eta_prime": -159.866, "theta_prime": -116.669, "eta_base": -116.915, "theta_base": -120.476, "v0": 3.438, "v1": -25.517, "v2": 36.766, "v3": -35.727, "v4": 20.432, "amplitude": 37.814, "phase_angle": 13.518, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.250, "filter_rmsd": 0.019, "frame": { "rmsd": 0.019, "origin": [ 195.953, 200.017, 166.077 ], "x_axis": [ 0.134, -0.694, 0.708 ], "y_axis": [ -0.974, 0.040, 0.223 ], "z_axis": [ -0.183, -0.719, -0.670 ], "quaternion": [ 0.355, 0.664, -0.628, 0.198 ] } }, { "index": 2098, "index_chain": 2098, "chain_name": "A", "nt_resnum": 2272, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2272", "linked_nts": [ "///A/2271", "///A/2273" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,phosphate", "alpha": -87.261, "beta": 75.175, "gamma": 178.080, "delta": 80.602, "epsilon": -105.912, "zeta": -98.267, "epsilon_zeta": -7.644, "bb_type": "--", "chi": -150.198, "glyco_bond": "anti", "C5prime_xyz": [ -1.358, 8.806, -0.102 ], "P_xyz": [ -2.696, 10.177, -1.891 ], "form": ".", "ssZp": 3.615, "Dp": 4.664, "splay_angle": 25.644, "splay_distance": 4.278, "splay_ratio": 0.222, "d22": 3.816, "d64": 3.688, "eta": -160.580, "theta": -171.006, "eta_prime": -158.464, "theta_prime": -167.108, "eta_base": -146.582, "theta_base": -179.391, "v0": -1.077, "v1": -21.744, "v2": 34.947, "v3": -36.481, "v4": 23.746, "amplitude": 37.236, "phase_angle": 20.193, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 196.173, 196.021, 165.123 ], "x_axis": [ 0.003, -0.757, 0.654 ], "y_axis": [ -0.999, 0.024, 0.032 ], "z_axis": [ -0.040, -0.653, -0.756 ], "quaternion": [ -0.260, -0.659, 0.667, -0.233 ] } }, { "index": 2099, "index_chain": 2099, "chain_name": "A", "nt_resnum": 2273, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2273", "linked_nts": [ "///A/2272", null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "break,anti,~C2'-endo,non-pair-contact,ss-non-loop,phosphate", "alpha": 163.467, "beta": -173.847, "gamma": 152.294, "delta": 148.667, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -140.681, "glyco_bond": "anti", "C5prime_xyz": [ -1.813, 8.659, -0.090 ], "P_xyz": [ 0.523, 9.464, -0.966 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": -19.874, "v1": 34.841, "v2": -35.642, "v3": 25.136, "v4": -3.502, "amplitude": 36.636, "phase_angle": 166.627, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 196.408, 192.992, 162.110 ], "x_axis": [ 0.046, 0.634, 0.772 ], "y_axis": [ -0.987, 0.149, -0.064 ], "z_axis": [ -0.156, -0.759, 0.633 ], "quaternion": [ 0.676, 0.257, -0.343, 0.599 ] } }, { "index": 2100, "index_chain": 2100, "chain_name": "A", "nt_resnum": 2289, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2289", "linked_nts": [ null, "///A/2290" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,cap-acceptor,phosphate", "alpha": null, "beta": -121.202, "gamma": 173.921, "delta": 147.635, "epsilon": -162.796, "zeta": -145.080, "epsilon_zeta": -17.716, "bb_type": "--", "chi": -108.703, "glyco_bond": "anti", "C5prime_xyz": [ -2.213, 8.387, -1.698 ], "P_xyz": [ -0.581, 7.780, -3.658 ], "form": ".", "ssZp": 2.343, "Dp": 2.190, "splay_angle": 22.048, "splay_distance": 3.779, "splay_ratio": 0.193, "d22": 4.336, "d64": 4.307, "eta": null, "theta": -128.484, "eta_prime": null, "theta_prime": 163.302, "eta_base": null, "theta_base": -152.447, "v0": -24.548, "v1": 38.802, "v2": -37.227, "v3": 23.965, "v4": 0.172, "amplitude": 39.383, "phase_angle": 160.952, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.008, "origin": [ 199.295, 177.409, 130.209 ], "x_axis": [ 0.500, -0.592, 0.632 ], "y_axis": [ -0.515, 0.384, 0.767 ], "z_axis": [ -0.696, -0.709, -0.112 ], "quaternion": [ 0.666, 0.554, -0.499, -0.029 ] } }, { "index": 2101, "index_chain": 2101, "chain_name": "A", "nt_resnum": 2290, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2290", "linked_nts": [ "///A/2289", "///A/2291" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,multiplet,hairpin-loop,phosphate", "alpha": 113.802, "beta": -146.692, "gamma": -178.803, "delta": 80.093, "epsilon": 162.152, "zeta": 31.877, "epsilon_zeta": 130.275, "bb_type": "--", "chi": -175.756, "glyco_bond": "anti", "C5prime_xyz": [ -1.070, 8.451, 1.427 ], "P_xyz": [ 0.452, 10.042, -0.026 ], "form": ".", "ssZp": 4.252, "Dp": 4.308, "splay_angle": 72.854, "splay_distance": 11.612, "splay_ratio": 0.606, "d22": 10.820, "d64": 13.775, "eta": 151.477, "theta": -107.624, "eta_prime": 157.240, "theta_prime": -139.969, "eta_base": -141.982, "theta_base": -169.699, "v0": 7.212, "v1": -29.897, "v2": 39.922, "v3": -36.696, "v4": 18.628, "amplitude": 40.359, "phase_angle": 8.433, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "4n", "suiteness": 0.030, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 197.175, 174.510, 129.033 ], "x_axis": [ 0.111, -0.306, 0.946 ], "y_axis": [ -0.608, 0.732, 0.308 ], "z_axis": [ -0.786, -0.609, -0.104 ], "quaternion": [ 0.659, 0.348, -0.657, 0.115 ] } }, { "index": 2102, "index_chain": 2102, "chain_name": "A", "nt_resnum": 2291, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2291", "linked_nts": [ "///A/2290", "///A/2292" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -130.460, "beta": -155.417, "gamma": -142.257, "delta": 135.162, "epsilon": 54.951, "zeta": 77.882, "epsilon_zeta": -22.931, "bb_type": "--", "chi": -167.067, "glyco_bond": "anti", "C5prime_xyz": [ -2.443, 8.651, 1.073 ], "P_xyz": [ -1.165, 10.920, 0.644 ], "form": ".", "ssZp": -1.075, "Dp": 1.634, "splay_angle": 93.051, "splay_distance": 12.891, "splay_ratio": 0.728, "d22": 10.738, "d64": 13.980, "eta": 57.899, "theta": 143.789, "eta_prime": 49.256, "theta_prime": 170.491, "eta_base": 29.727, "theta_base": -172.903, "v0": -26.453, "v1": 36.068, "v2": -31.507, "v3": 17.133, "v4": 5.598, "amplitude": 35.597, "phase_angle": 152.265, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.008, "origin": [ 191.833, 168.146, 120.922 ], "x_axis": [ -0.726, 0.138, -0.673 ], "y_axis": [ -0.292, 0.825, 0.484 ], "z_axis": [ 0.622, 0.548, -0.559 ], "quaternion": [ 0.367, -0.044, 0.882, 0.293 ] } }, { "index": 2103, "index_chain": 2103, "chain_name": "A", "nt_resnum": 2292, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2292", "linked_nts": [ "///A/2291", "///A/2293" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -153.872, "beta": -164.907, "gamma": 178.620, "delta": 147.500, "epsilon": -145.720, "zeta": -89.157, "epsilon_zeta": -56.562, "bb_type": "BI", "chi": -105.644, "glyco_bond": "anti", "C5prime_xyz": [ -2.259, 8.269, -1.856 ], "P_xyz": [ -0.888, 8.640, -4.061 ], "form": ".", "ssZp": 1.868, "Dp": 1.869, "splay_angle": 63.549, "splay_distance": 10.399, "splay_ratio": 0.527, "d22": 6.824, "d64": 7.079, "eta": -47.015, "theta": -111.918, "eta_prime": -23.076, "theta_prime": -123.659, "eta_base": -22.561, "theta_base": -89.318, "v0": -22.662, "v1": 36.818, "v2": -36.067, "v3": 23.940, "v4": -0.946, "amplitude": 37.778, "phase_angle": 162.690, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.006, "origin": [ 199.601, 164.713, 130.619 ], "x_axis": [ -0.090, 0.154, 0.984 ], "y_axis": [ -0.910, 0.389, -0.144 ], "z_axis": [ -0.405, -0.908, 0.105 ], "quaternion": [ 0.592, 0.323, -0.586, 0.449 ] } }, { "index": 2104, "index_chain": 2104, "chain_name": "A", "nt_resnum": 2293, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2293", "linked_nts": [ "///A/2292", "///A/2294" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 168.447, "beta": -172.655, "gamma": 169.623, "delta": 143.770, "epsilon": -159.336, "zeta": -73.318, "epsilon_zeta": -86.017, "bb_type": "BI", "chi": -120.009, "glyco_bond": "anti", "C5prime_xyz": [ -1.971, 8.615, -1.217 ], "P_xyz": [ -0.364, 9.356, -3.147 ], "form": ".", "ssZp": 2.370, "Dp": 2.242, "splay_angle": 106.649, "splay_distance": 15.544, "splay_ratio": 0.802, "d22": 9.238, "d64": 12.298, "eta": 167.697, "theta": -125.010, "eta_prime": -146.331, "theta_prime": -140.461, "eta_base": -114.746, "theta_base": -132.213, "v0": -23.792, "v1": 36.174, "v2": -34.013, "v3": 21.103, "v4": 1.483, "amplitude": 36.452, "phase_angle": 158.922, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.007, "origin": [ 189.849, 162.546, 133.504 ], "x_axis": [ -0.439, 0.877, 0.195 ], "y_axis": [ -0.082, 0.177, -0.981 ], "z_axis": [ -0.895, -0.447, -0.006 ], "quaternion": [ -0.428, 0.312, 0.637, -0.560 ] } }, { "index": 2105, "index_chain": 2105, "chain_name": "A", "nt_resnum": 2294, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2294", "linked_nts": [ "///A/2293", "///A/2295" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-stack,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,splayed-apart", "alpha": -128.579, "beta": 168.667, "gamma": -170.712, "delta": 156.201, "epsilon": 166.780, "zeta": -90.035, "epsilon_zeta": -103.186, "bb_type": "BI", "chi": 150.461, "glyco_bond": "anti", "C5prime_xyz": [ -2.879, 7.187, 2.808 ], "P_xyz": [ -1.627, 8.410, 4.759 ], "form": ".", "ssZp": -1.419, "Dp": 2.072, "splay_angle": 98.948, "splay_distance": 11.875, "splay_ratio": 0.764, "d22": null, "d64": null, "eta": -97.054, "theta": -154.311, "eta_prime": -64.755, "theta_prime": 155.998, "eta_base": -35.400, "theta_base": 86.536, "v0": -18.908, "v1": 38.335, "v2": -41.871, "v3": 31.981, "v4": -8.532, "amplitude": 42.223, "phase_angle": 172.603, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.111, "frame": { "rmsd": 0.011, "origin": [ 180.574, 154.045, 124.375 ], "x_axis": [ -0.452, 0.658, -0.602 ], "y_axis": [ 0.583, 0.729, 0.358 ], "z_axis": [ 0.675, -0.190, -0.713 ], "quaternion": [ 0.375, 0.365, 0.851, 0.050 ] } }, { "index": 2106, "index_chain": 2106, "chain_name": "A", "nt_resnum": 2295, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2295", "linked_nts": [ "///A/2294", "///A/2296" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-stack,non-canonical,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart", "alpha": 158.385, "beta": 178.840, "gamma": 77.975, "delta": 144.080, "epsilon": -111.856, "zeta": -108.466, "epsilon_zeta": -3.390, "bb_type": "--", "chi": -40.610, "glyco_bond": "--", "C5prime_xyz": [ -3.745, 5.401, -3.181 ], "P_xyz": [ -1.861, 4.491, -4.788 ], "form": ".", "ssZp": -0.749, "Dp": 1.628, "splay_angle": 48.783, "splay_distance": 7.930, "splay_ratio": 0.490, "d22": null, "d64": null, "eta": 69.574, "theta": -130.457, "eta_prime": 90.564, "theta_prime": 168.234, "eta_base": 35.156, "theta_base": 93.258, "v0": -17.101, "v1": 30.319, "v2": -31.253, "v3": 22.042, "v4": -3.339, "amplitude": 32.063, "phase_angle": 167.095, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.035, "frame": { "rmsd": 0.014, "origin": [ 183.989, 161.406, 133.045 ], "x_axis": [ 0.487, 0.632, -0.603 ], "y_axis": [ -0.254, -0.558, -0.790 ], "z_axis": [ -0.836, 0.538, -0.111 ], "quaternion": [ -0.452, 0.734, 0.129, -0.490 ] } }, { "index": 2107, "index_chain": 2107, "chain_name": "A", "nt_resnum": 2296, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2296", "linked_nts": [ "///A/2295", "///A/2297" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -15.549, "beta": -79.591, "gamma": -177.655, "delta": 146.491, "epsilon": -161.014, "zeta": 8.052, "epsilon_zeta": 190.934, "bb_type": "--", "chi": -32.786, "glyco_bond": "--", "C5prime_xyz": [ -4.301, 5.331, -2.885 ], "P_xyz": [ -4.192, 2.701, -2.838 ], "form": ".", "ssZp": 0.293, "Dp": 2.057, "splay_angle": 91.461, "splay_distance": 11.665, "splay_ratio": 0.746, "d22": null, "d64": null, "eta": -18.375, "theta": 88.172, "eta_prime": 122.580, "theta_prime": -54.531, "eta_base": 75.020, "theta_base": 13.051, "v0": -21.523, "v1": 35.513, "v2": -35.201, "v3": 23.650, "v4": -1.526, "amplitude": 36.692, "phase_angle": 163.613, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.009, "origin": [ 180.344, 154.518, 134.514 ], "x_axis": [ 0.397, 0.788, 0.470 ], "y_axis": [ -0.433, 0.612, -0.662 ], "z_axis": [ -0.809, 0.059, 0.584 ], "quaternion": [ 0.805, -0.224, -0.397, 0.379 ] } }, { "index": 2108, "index_chain": 2108, "chain_name": "A", "nt_resnum": 2297, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2297", "linked_nts": [ "///A/2296", "///A/2298" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,phosphate,splayed-apart", "alpha": 169.225, "beta": -168.677, "gamma": 164.263, "delta": 153.173, "epsilon": -154.210, "zeta": 148.902, "epsilon_zeta": 56.888, "bb_type": "--", "chi": 19.575, "glyco_bond": "syn", "C5prime_xyz": [ -5.158, 3.653, -1.142 ], "P_xyz": [ -5.296, 1.048, -0.960 ], "form": ".", "ssZp": -1.224, "Dp": 1.756, "splay_angle": 93.814, "splay_distance": 14.101, "splay_ratio": 0.731, "d22": null, "d64": null, "eta": -176.446, "theta": 83.861, "eta_prime": -113.083, "theta_prime": 17.594, "eta_base": -121.367, "theta_base": -24.248, "v0": -17.215, "v1": 34.577, "v2": -37.753, "v3": 28.801, "v4": -7.482, "amplitude": 38.088, "phase_angle": 172.398, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 176.023, 152.323, 123.904 ], "x_axis": [ 0.194, -0.692, -0.695 ], "y_axis": [ 0.313, 0.715, -0.625 ], "z_axis": [ 0.930, -0.096, 0.356 ], "quaternion": [ 0.752, -0.176, 0.540, -0.334 ] } }, { "index": 2109, "index_chain": 2109, "chain_name": "A", "nt_resnum": 2298, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2298", "linked_nts": [ "///A/2297", "///A/2299" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart", "alpha": -40.037, "beta": -106.837, "gamma": 179.321, "delta": 127.789, "epsilon": -166.433, "zeta": -81.456, "epsilon_zeta": -84.977, "bb_type": "BI", "chi": -168.815, "glyco_bond": "anti", "C5prime_xyz": [ -2.332, 8.727, 0.958 ], "P_xyz": [ -0.004, 9.286, -0.140 ], "form": ".", "ssZp": 1.726, "Dp": 2.365, "splay_angle": 38.895, "splay_distance": 5.677, "splay_ratio": 0.366, "d22": null, "d64": null, "eta": 45.551, "theta": -108.464, "eta_prime": 89.998, "theta_prime": -131.586, "eta_base": 115.997, "theta_base": -54.481, "v0": -31.673, "v1": 36.457, "v2": -27.215, "v3": 9.774, "v4": 13.612, "amplitude": 35.882, "phase_angle": 139.330, "puckering": "C1'-exo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 169.553, 164.481, 126.929 ], "x_axis": [ -0.550, -0.746, -0.375 ], "y_axis": [ 0.768, -0.275, -0.578 ], "z_axis": [ 0.328, -0.606, 0.725 ], "quaternion": [ -0.474, -0.015, -0.371, 0.798 ] } }, { "index": 2110, "index_chain": 2110, "chain_name": "A", "nt_resnum": 2299, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2299", "linked_nts": [ "///A/2298", "///A/2300" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-acceptor", "alpha": -143.366, "beta": -116.319, "gamma": 76.347, "delta": 90.369, "epsilon": -155.276, "zeta": -81.242, "epsilon_zeta": -74.034, "bb_type": "BI", "chi": -69.265, "glyco_bond": "--", "C5prime_xyz": [ -2.275, 5.997, -3.487 ], "P_xyz": [ 0.246, 5.287, -3.784 ], "form": ".", "ssZp": -1.268, "Dp": 4.620, "splay_angle": 30.208, "splay_distance": 5.049, "splay_ratio": 0.285, "d22": null, "d64": null, "eta": 153.698, "theta": -137.538, "eta_prime": -177.424, "theta_prime": -140.176, "eta_base": -99.712, "theta_base": -125.156, "v0": 12.816, "v1": -29.015, "v2": 33.431, "v3": -26.911, "v4": 9.029, "amplitude": 33.486, "phase_angle": 356.723, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 174.333, 161.420, 127.029 ], "x_axis": [ 0.738, -0.517, -0.434 ], "y_axis": [ 0.672, 0.501, 0.545 ], "z_axis": [ -0.064, -0.694, 0.717 ], "quaternion": [ 0.860, 0.360, 0.108, -0.346 ] } }, { "index": 2111, "index_chain": 2111, "chain_name": "A", "nt_resnum": 2300, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2300", "linked_nts": [ "///A/2299", "///A/2301" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-pair-contact,hairpin-loop", "alpha": -57.281, "beta": 156.883, "gamma": 66.238, "delta": 83.196, "epsilon": -106.226, "zeta": -76.161, "epsilon_zeta": -30.064, "bb_type": "--", "chi": -83.984, "glyco_bond": "--", "C5prime_xyz": [ -2.640, 7.077, -3.153 ], "P_xyz": [ -1.177, 5.891, -4.971 ], "form": ".", "ssZp": -1.188, "Dp": 4.695, "splay_angle": 59.826, "splay_distance": 9.363, "splay_ratio": 0.508, "d22": null, "d64": null, "eta": -171.253, "theta": -97.751, "eta_prime": -161.491, "theta_prime": -82.049, "eta_base": -149.600, "theta_base": -50.275, "v0": 1.286, "v1": -22.956, "v2": 34.712, "v3": -34.854, "v4": 21.219, "amplitude": 36.220, "phase_angle": 16.592, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.541, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 178.262, 160.443, 130.045 ], "x_axis": [ 0.864, -0.279, -0.419 ], "y_axis": [ 0.503, 0.491, 0.711 ], "z_axis": [ 0.007, -0.826, 0.564 ], "quaternion": [ 0.854, 0.450, 0.125, -0.229 ] } }, { "index": 2112, "index_chain": 2112, "chain_name": "A", "nt_resnum": 2301, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2301", "linked_nts": [ "///A/2300", "///A/2302" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-canonical,hairpin-loop,splayed-apart", "alpha": -19.547, "beta": 126.130, "gamma": 72.834, "delta": 85.344, "epsilon": -162.395, "zeta": 105.457, "epsilon_zeta": 92.148, "bb_type": "--", "chi": -126.043, "glyco_bond": "anti", "C5prime_xyz": [ -1.707, 8.434, -1.456 ], "P_xyz": [ 0.094, 7.573, -3.162 ], "form": ".", "ssZp": 3.076, "Dp": 4.468, "splay_angle": 122.808, "splay_distance": 13.172, "splay_ratio": 0.890, "d22": null, "d64": null, "eta": 176.169, "theta": 30.489, "eta_prime": -127.381, "theta_prime": 28.123, "eta_base": -88.259, "theta_base": 90.717, "v0": 0.986, "v1": -21.523, "v2": 32.654, "v3": -33.036, "v4": 20.223, "amplitude": 34.149, "phase_angle": 17.013, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.003, "origin": [ 184.935, 166.972, 129.331 ], "x_axis": [ 0.403, 0.897, 0.181 ], "y_axis": [ 0.021, -0.207, 0.978 ], "z_axis": [ 0.915, -0.390, -0.102 ], "quaternion": [ 0.523, 0.654, 0.351, 0.419 ] } }, { "index": 2113, "index_chain": 2113, "chain_name": "A", "nt_resnum": 2302, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2302", "linked_nts": [ "///A/2301", "///A/2303" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -84.853, "beta": 125.079, "gamma": 74.218, "delta": 149.954, "epsilon": -111.993, "zeta": -52.612, "epsilon_zeta": -59.381, "bb_type": "--", "chi": 87.989, "glyco_bond": "syn", "C5prime_xyz": [ -4.524, 4.604, 2.526 ], "P_xyz": [ -2.997, 2.605, 3.285 ], "form": ".", "ssZp": -0.519, "Dp": 1.104, "splay_angle": 25.724, "splay_distance": 4.323, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 169.495, "theta": -39.184, "eta_prime": -119.703, "theta_prime": -76.576, "eta_base": -132.423, "theta_base": -64.662, "v0": -17.076, "v1": 32.877, "v2": -35.374, "v3": 26.437, "v4": -6.074, "amplitude": 35.825, "phase_angle": 170.898, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.046, "frame": { "rmsd": 0.014, "origin": [ 184.906, 157.567, 138.554 ], "x_axis": [ -0.856, -0.349, -0.381 ], "y_axis": [ -0.454, 0.861, 0.229 ], "z_axis": [ 0.248, 0.369, -0.896 ], "quaternion": [ 0.166, -0.211, 0.950, 0.158 ] } }, { "index": 2114, "index_chain": 2114, "chain_name": "A", "nt_resnum": 2303, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2303", "linked_nts": [ "///A/2302", "///A/2304" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor", "alpha": -67.739, "beta": 153.286, "gamma": 30.206, "delta": 74.649, "epsilon": -119.904, "zeta": -24.120, "epsilon_zeta": -95.784, "bb_type": "--", "chi": -125.978, "glyco_bond": "anti", "C5prime_xyz": [ -1.839, 8.574, -1.461 ], "P_xyz": [ 0.573, 9.076, -2.318 ], "form": ".", "ssZp": 2.335, "Dp": 4.769, "splay_angle": 66.912, "splay_distance": 10.119, "splay_ratio": 0.554, "d22": null, "d64": null, "eta": 119.895, "theta": -72.238, "eta_prime": 168.055, "theta_prime": -118.595, "eta_base": -147.580, "theta_base": 178.308, "v0": -0.627, "v1": -24.304, "v2": 38.644, "v3": -40.057, "v4": 25.585, "amplitude": 40.979, "phase_angle": 19.435, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.079, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 189.183, 158.127, 138.834 ], "x_axis": [ 0.210, 0.568, -0.796 ], "y_axis": [ -0.023, 0.816, 0.577 ], "z_axis": [ 0.977, -0.103, 0.184 ], "quaternion": [ 0.743, 0.229, 0.596, 0.199 ] } }, { "index": 2115, "index_chain": 2115, "chain_name": "A", "nt_resnum": 2304, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2304", "linked_nts": [ "///A/2303", "///A/2305" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 177.384, "beta": 133.367, "gamma": 62.585, "delta": 149.807, "epsilon": -165.413, "zeta": -83.733, "epsilon_zeta": -81.680, "bb_type": "BI", "chi": -124.946, "glyco_bond": "anti", "C5prime_xyz": [ -1.837, 8.630, -0.926 ], "P_xyz": [ 0.784, 8.407, -0.893 ], "form": ".", "ssZp": 2.011, "Dp": 2.042, "splay_angle": 143.496, "splay_distance": 16.418, "splay_ratio": 0.950, "d22": null, "d64": null, "eta": -4.955, "theta": -90.225, "eta_prime": 75.884, "theta_prime": -136.810, "eta_base": 48.002, "theta_base": -162.791, "v0": -21.442, "v1": 36.722, "v2": -37.069, "v3": 25.632, "v4": -2.829, "amplitude": 38.304, "phase_angle": 165.407, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.004, "origin": [ 196.813, 158.772, 145.449 ], "x_axis": [ -0.416, -0.271, 0.868 ], "y_axis": [ -0.709, 0.695, -0.124 ], "z_axis": [ -0.569, -0.667, -0.481 ], "quaternion": [ -0.446, -0.304, 0.805, -0.245 ] } }, { "index": 2116, "index_chain": 2116, "chain_name": "A", "nt_resnum": 2305, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2305", "linked_nts": [ "///A/2304", "///A/2306" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -87.503, "beta": -121.117, "gamma": 124.139, "delta": 83.476, "epsilon": -84.454, "zeta": -144.850, "epsilon_zeta": 60.397, "bb_type": "--", "chi": -178.479, "glyco_bond": "anti", "C5prime_xyz": [ -1.035, 8.236, 1.574 ], "P_xyz": [ 1.372, 7.821, 0.610 ], "form": ".", "ssZp": 4.642, "Dp": 4.834, "splay_angle": 27.251, "splay_distance": 4.406, "splay_ratio": 0.238, "d22": null, "d64": null, "eta": -77.604, "theta": -121.272, "eta_prime": -67.025, "theta_prime": -142.675, "eta_base": -36.631, "theta_base": -174.383, "v0": 9.755, "v1": -30.265, "v2": 38.182, "v3": -33.591, "v4": 15.067, "amplitude": 38.285, "phase_angle": 4.204, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 191.831, 164.271, 130.804 ], "x_axis": [ -0.285, 0.923, 0.259 ], "y_axis": [ 0.125, -0.233, 0.965 ], "z_axis": [ 0.950, 0.307, -0.049 ], "quaternion": [ 0.329, 0.499, 0.525, 0.606 ] } }, { "index": 2117, "index_chain": 2117, "chain_name": "A", "nt_resnum": 2306, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2306", "linked_nts": [ "///A/2305", "///A/2307" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop", "alpha": 101.749, "beta": -128.005, "gamma": 173.081, "delta": 82.572, "epsilon": 156.946, "zeta": 49.250, "epsilon_zeta": 107.696, "bb_type": "--", "chi": 177.256, "glyco_bond": "anti", "C5prime_xyz": [ -1.620, 8.313, 1.805 ], "P_xyz": [ 0.237, 9.569, 0.443 ], "form": ".", "ssZp": 3.896, "Dp": 4.119, "splay_angle": 51.747, "splay_distance": 8.759, "splay_ratio": 0.456, "d22": null, "d64": null, "eta": 128.394, "theta": -78.067, "eta_prime": 154.400, "theta_prime": -118.454, "eta_base": 150.385, "theta_base": -111.229, "v0": 3.550, "v1": -24.397, "v2": 34.645, "v3": -33.610, "v4": 19.024, "amplitude": 35.562, "phase_angle": 13.036, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 194.995, 163.320, 127.889 ], "x_axis": [ -0.843, 0.399, 0.360 ], "y_axis": [ 0.297, -0.212, 0.931 ], "z_axis": [ 0.448, 0.892, 0.060 ], "quaternion": [ 0.035, 0.278, 0.627, 0.727 ] } }, { "index": 2118, "index_chain": 2118, "chain_name": "A", "nt_resnum": 2307, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2307", "linked_nts": [ "///A/2306", "///A/2308" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate", "alpha": 136.454, "beta": 125.485, "gamma": 177.807, "delta": 83.285, "epsilon": -168.187, "zeta": -78.461, "epsilon_zeta": -89.726, "bb_type": "BI", "chi": -165.985, "glyco_bond": "anti", "C5prime_xyz": [ -1.286, 8.558, 0.901 ], "P_xyz": [ -1.235, 10.940, -0.164 ], "form": "A", "ssZp": 4.462, "Dp": 4.497, "splay_angle": 23.939, "splay_distance": 3.795, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 157.953, "theta": 178.059, "eta_prime": -172.750, "theta_prime": -168.427, "eta_base": -132.771, "theta_base": -118.171, "v0": 4.776, "v1": -25.793, "v2": 35.784, "v3": -34.018, "v4": 18.456, "amplitude": 36.485, "phase_angle": 11.249, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 196.283, 171.972, 127.437 ], "x_axis": [ -0.259, 0.381, 0.888 ], "y_axis": [ 0.544, -0.702, 0.460 ], "z_axis": [ 0.798, 0.602, -0.025 ], "quaternion": [ -0.059, 0.606, 0.382, 0.696 ] } }, { "index": 2119, "index_chain": 2119, "chain_name": "A", "nt_resnum": 2308, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2308", "linked_nts": [ "///A/2307", "///A/2309" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,multiplet,hairpin-loop", "alpha": 166.811, "beta": -138.033, "gamma": 153.531, "delta": 82.266, "epsilon": -125.615, "zeta": -124.333, "epsilon_zeta": -1.282, "bb_type": "--", "chi": 177.750, "glyco_bond": "anti", "C5prime_xyz": [ -1.594, 8.417, 1.794 ], "P_xyz": [ 0.746, 9.270, 0.994 ], "form": "A", "ssZp": 4.589, "Dp": 4.644, "splay_angle": 20.134, "splay_distance": 3.134, "splay_ratio": 0.176, "d22": null, "d64": null, "eta": 162.168, "theta": -135.980, "eta_prime": -174.509, "theta_prime": -147.080, "eta_base": -111.225, "theta_base": -115.628, "v0": 1.441, "v1": -23.030, "v2": 34.625, "v3": -34.774, "v4": 20.994, "amplitude": 36.088, "phase_angle": 16.367, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.113, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 197.553, 175.172, 129.033 ], "x_axis": [ 0.166, -0.208, 0.964 ], "y_axis": [ 0.624, -0.734, -0.266 ], "z_axis": [ 0.763, 0.646, 0.008 ], "quaternion": [ -0.332, 0.688, 0.151, 0.628 ] } }, { "index": 2120, "index_chain": 2120, "chain_name": "A", "nt_resnum": 2309, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2309", "linked_nts": [ "///A/2308", "///A/2310" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,cap-acceptor", "alpha": 135.635, "beta": -115.282, "gamma": 161.872, "delta": 79.013, "epsilon": 177.883, "zeta": 24.983, "epsilon_zeta": 152.900, "bb_type": "--", "chi": 173.259, "glyco_bond": "anti", "C5prime_xyz": [ -1.511, 8.215, 2.021 ], "P_xyz": [ 0.520, 9.036, 0.617 ], "form": ".", "ssZp": 4.245, "Dp": 4.431, "splay_angle": 59.853, "splay_distance": 8.559, "splay_ratio": 0.504, "d22": null, "d64": null, "eta": 131.666, "theta": -73.964, "eta_prime": 169.486, "theta_prime": -86.938, "eta_base": -128.016, "theta_base": -45.701, "v0": 5.288, "v1": -28.272, "v2": 39.375, "v3": -37.347, "v4": 20.202, "amplitude": 40.139, "phase_angle": 11.198, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 199.166, 177.574, 130.237 ], "x_axis": [ 0.497, -0.597, 0.629 ], "y_axis": [ 0.508, -0.387, -0.770 ], "z_axis": [ 0.703, 0.702, 0.111 ], "quaternion": [ 0.553, -0.666, 0.034, -0.500 ] } }, { "index": 2121, "index_chain": 2121, "chain_name": "A", "nt_resnum": 2310, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2310", "linked_nts": [ "///A/2309", "///A/2311" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,phosphate,splayed-apart", "alpha": -148.287, "beta": 158.763, "gamma": 117.381, "delta": 149.568, "epsilon": -107.085, "zeta": -72.913, "epsilon_zeta": -34.171, "bb_type": "--", "chi": -150.888, "glyco_bond": "anti", "C5prime_xyz": [ -1.620, 8.670, 0.515 ], "P_xyz": [ 0.939, 9.158, 0.182 ], "form": ".", "ssZp": 1.028, "Dp": 1.064, "splay_angle": 107.000, "splay_distance": 14.800, "splay_ratio": 0.806, "d22": null, "d64": null, "eta": -167.025, "theta": -22.454, "eta_prime": -112.781, "theta_prime": -72.115, "eta_base": -34.511, "theta_base": -140.993, "v0": -19.247, "v1": 34.651, "v2": -35.965, "v3": 25.820, "v4": -4.287, "amplitude": 36.786, "phase_angle": 167.869, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.004, "origin": [ 207.308, 175.068, 129.415 ], "x_axis": [ 0.534, -0.145, -0.833 ], "y_axis": [ -0.577, 0.658, -0.484 ], "z_axis": [ 0.618, 0.739, 0.267 ], "quaternion": [ 0.784, -0.390, 0.463, 0.138 ] } }, { "index": 2122, "index_chain": 2122, "chain_name": "A", "nt_resnum": 2311, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2311", "linked_nts": [ "///A/2310", "///A/2312" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,BII,non-stack,non-pair-contact,ss-non-loop,cap-donor,phosphate,splayed-apart", "alpha": 91.221, "beta": 76.789, "gamma": 167.983, "delta": 79.694, "epsilon": -134.901, "zeta": 165.000, "epsilon_zeta": 60.099, "bb_type": "BII", "chi": -30.149, "glyco_bond": "--", "C5prime_xyz": [ -4.581, 4.726, -2.816 ], "P_xyz": [ -6.981, 4.155, -1.895 ], "form": ".", "ssZp": -4.092, "Dp": 4.656, "splay_angle": 95.931, "splay_distance": 11.543, "splay_ratio": 0.760, "d22": null, "d64": null, "eta": -10.350, "theta": 22.549, "eta_prime": 26.832, "theta_prime": 41.758, "eta_base": 97.674, "theta_base": 87.326, "v0": -1.374, "v1": -21.267, "v2": 34.516, "v3": -36.328, "v4": 23.817, "amplitude": 36.911, "phase_angle": 20.752, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 201.818, 185.584, 138.263 ], "x_axis": [ 0.381, 0.799, 0.466 ], "y_axis": [ -0.179, 0.558, -0.811 ], "z_axis": [ -0.907, 0.226, 0.355 ], "quaternion": [ 0.757, -0.342, -0.453, 0.323 ] } }, { "index": 2123, "index_chain": 2123, "chain_name": "A", "nt_resnum": 2312, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2312", "linked_nts": [ "///A/2311", "///A/2313" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -89.312, "beta": 110.173, "gamma": 67.606, "delta": 87.148, "epsilon": -157.601, "zeta": -150.153, "epsilon_zeta": -7.447, "bb_type": "--", "chi": 62.135, "glyco_bond": "syn", "C5prime_xyz": [ -5.310, 4.471, 1.814 ], "P_xyz": [ -3.894, 2.790, 3.251 ], "form": ".", "ssZp": -2.598, "Dp": 4.135, "splay_angle": 96.481, "splay_distance": 13.611, "splay_ratio": 0.748, "d22": 11.438, "d64": 11.688, "eta": 146.454, "theta": 178.745, "eta_prime": 166.928, "theta_prime": 162.549, "eta_base": -152.845, "theta_base": 126.306, "v0": -6.897, "v1": -12.445, "v2": 25.672, "v3": -30.425, "v4": 23.583, "amplitude": 30.116, "phase_angle": 31.522, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "3a", "suiteness": 0.018, "filter_rmsd": 0.070, "frame": { "rmsd": 0.009, "origin": [ 198.075, 189.887, 128.227 ], "x_axis": [ -0.881, -0.064, 0.469 ], "y_axis": [ 0.041, -0.997, -0.059 ], "z_axis": [ 0.472, -0.032, 0.881 ], "quaternion": [ -0.027, 0.243, -0.023, 0.969 ] } }, { "index": 2124, "index_chain": 2124, "chain_name": "A", "nt_resnum": 2313, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2313", "linked_nts": [ "///A/2312", "///A/2314" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": 85.550, "beta": 174.877, "gamma": -84.596, "delta": 86.454, "epsilon": -84.913, "zeta": -133.237, "epsilon_zeta": 48.324, "bb_type": "--", "chi": -61.611, "glyco_bond": "--", "C5prime_xyz": [ -3.445, 5.981, -3.381 ], "P_xyz": [ -4.110, 6.804, -5.770 ], "form": ".", "ssZp": -2.996, "Dp": 4.463, "splay_angle": 59.300, "splay_distance": 9.409, "splay_ratio": 0.500, "d22": 3.885, "d64": 3.644, "eta": -158.966, "theta": 170.589, "eta_prime": 174.370, "theta_prime": -159.920, "eta_base": 141.523, "theta_base": -137.849, "v0": -0.636, "v1": -19.471, "v2": 30.958, "v3": -32.138, "v4": 20.738, "amplitude": 32.875, "phase_angle": 19.661, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.058, "frame": { "rmsd": 0.009, "origin": [ 195.578, 179.536, 119.748 ], "x_axis": [ -0.695, 0.415, -0.587 ], "y_axis": [ 0.712, 0.513, -0.480 ], "z_axis": [ 0.102, -0.752, -0.652 ], "quaternion": [ 0.204, 0.333, 0.846, -0.364 ] } }, { "index": 2125, "index_chain": 2125, "chain_name": "A", "nt_resnum": 2314, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2314", "linked_nts": [ "///A/2313", "///A/2315" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,ss-non-loop", "alpha": -55.571, "beta": 121.527, "gamma": 80.910, "delta": 149.081, "epsilon": -55.893, "zeta": -154.297, "epsilon_zeta": 98.405, "bb_type": "BII", "chi": -154.366, "glyco_bond": "anti", "C5prime_xyz": [ -2.174, 8.695, 0.607 ], "P_xyz": [ 0.448, 8.636, 0.600 ], "form": ".", "ssZp": -0.228, "Dp": 0.291, "splay_angle": 72.591, "splay_distance": 10.530, "splay_ratio": 0.597, "d22": null, "d64": null, "eta": -113.125, "theta": -133.327, "eta_prime": -117.695, "theta_prime": -177.258, "eta_base": -131.953, "theta_base": 133.021, "v0": -23.619, "v1": 38.025, "v2": -36.982, "v3": 24.357, "v4": -0.717, "amplitude": 38.844, "phase_angle": 162.188, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.057, "frame": { "rmsd": 0.010, "origin": [ 197.193, 185.771, 112.889 ], "x_axis": [ -0.624, -0.059, 0.779 ], "y_axis": [ 0.781, -0.088, 0.618 ], "z_axis": [ 0.032, 0.994, 0.101 ], "quaternion": [ -0.312, 0.301, 0.599, 0.673 ] } }, { "index": 2126, "index_chain": 2126, "chain_name": "A", "nt_resnum": 2315, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2315", "linked_nts": [ "///A/2314", "///A/2316" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 56.674, "beta": -126.447, "gamma": 97.423, "delta": 150.008, "epsilon": -15.783, "zeta": -175.267, "epsilon_zeta": 159.484, "bb_type": "--", "chi": -96.928, "glyco_bond": "anti", "C5prime_xyz": [ -1.900, 7.832, -2.233 ], "P_xyz": [ 0.678, 7.771, -1.759 ], "form": ".", "ssZp": -0.688, "Dp": 0.731, "splay_angle": 118.912, "splay_distance": 16.057, "splay_ratio": 0.861, "d22": null, "d64": null, "eta": 20.336, "theta": -121.662, "eta_prime": 111.590, "theta_prime": -142.286, "eta_base": 80.849, "theta_base": -107.326, "v0": -15.687, "v1": 32.150, "v2": -35.431, "v3": 27.328, "v4": -7.505, "amplitude": 35.682, "phase_angle": 173.199, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.008, "origin": [ 204.048, 179.669, 107.728 ], "x_axis": [ 0.020, -0.604, 0.797 ], "y_axis": [ 0.131, 0.792, 0.597 ], "z_axis": [ -0.991, 0.093, 0.095 ], "quaternion": [ 0.690, 0.182, -0.647, -0.266 ] } }, { "index": 2127, "index_chain": 2127, "chain_name": "A", "nt_resnum": 2316, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2316", "linked_nts": [ "///A/2315", "///A/2317" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BII,non-pair-contact,ss-non-loop,cap-donor,phosphate,splayed-apart", "alpha": 176.917, "beta": 155.851, "gamma": 155.826, "delta": 152.429, "epsilon": -81.385, "zeta": 125.736, "epsilon_zeta": 152.879, "bb_type": "BII", "chi": -109.785, "glyco_bond": "anti", "C5prime_xyz": [ -1.937, 8.208, -1.615 ], "P_xyz": [ -0.490, 8.631, -3.755 ], "form": ".", "ssZp": 0.121, "Dp": 0.383, "splay_angle": 103.258, "splay_distance": 13.719, "splay_ratio": 0.790, "d22": null, "d64": null, "eta": -54.401, "theta": 96.878, "eta_prime": -97.164, "theta_prime": 91.200, "eta_base": -98.016, "theta_base": 47.295, "v0": -17.345, "v1": 34.114, "v2": -36.868, "v3": 27.869, "v4": -6.846, "amplitude": 37.267, "phase_angle": 171.605, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.036, "frame": { "rmsd": 0.010, "origin": [ 198.178, 194.613, 107.507 ], "x_axis": [ 0.233, 0.360, 0.903 ], "y_axis": [ 0.953, -0.270, -0.138 ], "z_axis": [ 0.194, 0.893, -0.406 ], "quaternion": [ -0.373, 0.691, 0.475, 0.397 ] } }, { "index": 2128, "index_chain": 2128, "chain_name": "A", "nt_resnum": 2317, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2317", "linked_nts": [ "///A/2316", "///A/2318" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,non-canonical,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 140.272, "beta": -160.753, "gamma": 18.193, "delta": 80.305, "epsilon": -94.418, "zeta": -150.067, "epsilon_zeta": 55.649, "bb_type": "--", "chi": -32.198, "glyco_bond": "syn", "C5prime_xyz": [ -4.158, 4.453, -3.065 ], "P_xyz": [ -3.228, 3.745, -5.425 ], "form": ".", "ssZp": -4.551, "Dp": 4.779, "splay_angle": 27.385, "splay_distance": 4.408, "splay_ratio": 0.279, "d22": null, "d64": null, "eta": 66.716, "theta": -141.601, "eta_prime": 50.306, "theta_prime": -121.178, "eta_base": 47.841, "theta_base": -82.129, "v0": 4.202, "v1": -25.529, "v2": 36.124, "v3": -34.672, "v4": 19.211, "amplitude": 36.967, "phase_angle": 12.256, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 204.554, 183.345, 102.968 ], "x_axis": [ -0.219, -0.183, 0.958 ], "y_axis": [ -0.866, 0.490, -0.104 ], "z_axis": [ -0.450, -0.852, -0.266 ], "quaternion": [ 0.501, 0.373, -0.703, 0.340 ] } }, { "index": 2129, "index_chain": 2129, "chain_name": "A", "nt_resnum": 2318, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2318", "linked_nts": [ "///A/2317", "///A/2319" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,cap-acceptor", "alpha": 84.683, "beta": -62.487, "gamma": -161.536, "delta": 139.168, "epsilon": 27.073, "zeta": 70.803, "epsilon_zeta": -43.730, "bb_type": "--", "chi": -33.758, "glyco_bond": "--", "C5prime_xyz": [ -4.536, 5.654, -2.692 ], "P_xyz": [ -5.414, 3.211, -2.323 ], "form": ".", "ssZp": 1.394, "Dp": 1.277, "splay_angle": 36.826, "splay_distance": 5.840, "splay_ratio": 0.317, "d22": null, "d64": null, "eta": -26.968, "theta": 94.184, "eta_prime": -77.370, "theta_prime": 132.425, "eta_base": -82.154, "theta_base": 129.849, "v0": -24.726, "v1": 35.630, "v2": -32.346, "v3": 18.908, "v4": 3.455, "amplitude": 35.485, "phase_angle": 155.722, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 203.760, 187.127, 105.090 ], "x_axis": [ 0.148, -0.194, 0.970 ], "y_axis": [ -0.926, 0.316, 0.204 ], "z_axis": [ -0.346, -0.929, -0.133 ], "quaternion": [ 0.577, 0.491, -0.570, 0.318 ] } }, { "index": 2130, "index_chain": 2130, "chain_name": "A", "nt_resnum": 2319, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2319", "linked_nts": [ "///A/2318", "///A/2320" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": 69.230, "beta": 112.323, "gamma": -170.406, "delta": 146.236, "epsilon": -99.365, "zeta": 45.998, "epsilon_zeta": 214.638, "bb_type": "--", "chi": -55.743, "glyco_bond": "--", "C5prime_xyz": [ -3.766, 6.491, -3.001 ], "P_xyz": [ -5.709, 5.910, -4.661 ], "form": ".", "ssZp": 0.492, "Dp": 0.938, "splay_angle": 94.728, "splay_distance": 15.049, "splay_ratio": 0.736, "d22": null, "d64": null, "eta": 158.290, "theta": -8.353, "eta_prime": 147.984, "theta_prime": 25.299, "eta_base": 145.584, "theta_base": 38.951, "v0": -25.579, "v1": 38.794, "v2": -36.417, "v3": 22.615, "v4": 1.690, "amplitude": 39.058, "phase_angle": 158.811, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 201.694, 181.989, 103.234 ], "x_axis": [ 0.431, -0.239, 0.870 ], "y_axis": [ -0.845, 0.232, 0.482 ], "z_axis": [ -0.317, -0.943, -0.102 ], "quaternion": [ 0.625, 0.570, -0.475, 0.242 ] } }, { "index": 2131, "index_chain": 2131, "chain_name": "A", "nt_resnum": 2320, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2320", "linked_nts": [ "///A/2319", "///A/2321" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart", "alpha": -134.359, "beta": -100.291, "gamma": 32.990, "delta": 145.510, "epsilon": -165.719, "zeta": -119.300, "epsilon_zeta": -46.419, "bb_type": "BI", "chi": -123.851, "glyco_bond": "anti", "C5prime_xyz": [ -1.925, 8.613, -1.031 ], "P_xyz": [ -1.282, 10.001, 1.109 ], "form": ".", "ssZp": 2.113, "Dp": 2.145, "splay_angle": 20.930, "splay_distance": 3.747, "splay_ratio": 0.189, "d22": 3.887, "d64": 3.719, "eta": 151.842, "theta": -120.424, "eta_prime": 156.127, "theta_prime": -131.739, "eta_base": 153.909, "theta_base": -79.036, "v0": -23.034, "v1": 37.000, "v2": -36.069, "v3": 23.581, "v4": -0.527, "amplitude": 37.911, "phase_angle": 162.067, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.008, "origin": [ 193.130, 190.909, 94.658 ], "x_axis": [ 1.000, -0.013, -0.004 ], "y_axis": [ -0.003, -0.512, 0.859 ], "z_axis": [ -0.013, -0.859, -0.512 ], "quaternion": [ 0.494, 0.869, -0.004, -0.005 ] } }, { "index": 2132, "index_chain": 2132, "chain_name": "A", "nt_resnum": 2321, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2321", "linked_nts": [ "///A/2320", "///A/2322" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate", "alpha": 119.203, "beta": -151.611, "gamma": -156.132, "delta": 137.749, "epsilon": -152.576, "zeta": -86.208, "epsilon_zeta": -66.368, "bb_type": "BI", "chi": -145.717, "glyco_bond": "anti", "C5prime_xyz": [ -1.949, 8.804, -0.002 ], "P_xyz": [ -0.431, 10.311, -1.520 ], "form": ".", "ssZp": 1.966, "Dp": 2.120, "splay_angle": 19.779, "splay_distance": 3.450, "splay_ratio": 0.175, "d22": 4.692, "d64": 4.186, "eta": -169.637, "theta": -135.401, "eta_prime": -158.224, "theta_prime": -147.233, "eta_base": -99.007, "theta_base": -133.641, "v0": -23.950, "v1": 33.352, "v2": -29.625, "v3": 16.582, "v4": 4.433, "amplitude": 33.059, "phase_angle": 153.654, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.111, "frame": { "rmsd": 0.012, "origin": [ 194.843, 188.102, 92.863 ], "x_axis": [ 0.734, -0.329, 0.594 ], "y_axis": [ -0.678, -0.394, 0.620 ], "z_axis": [ 0.030, -0.858, -0.513 ], "quaternion": [ 0.455, 0.813, -0.310, 0.192 ] } }, { "index": 2133, "index_chain": 2133, "chain_name": "A", "nt_resnum": 2322, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2322", "linked_nts": [ "///A/2321", "///A/2323" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate", "alpha": 136.623, "beta": 167.608, "gamma": 171.622, "delta": 145.737, "epsilon": -152.780, "zeta": -86.537, "epsilon_zeta": -66.242, "bb_type": "BI", "chi": -120.919, "glyco_bond": "anti", "C5prime_xyz": [ -2.012, 8.589, -1.164 ], "P_xyz": [ -0.680, 9.676, -3.124 ], "form": ".", "ssZp": 1.985, "Dp": 1.990, "splay_angle": 19.091, "splay_distance": 3.176, "splay_ratio": 0.166, "d22": 4.499, "d64": 3.247, "eta": 140.760, "theta": -151.923, "eta_prime": 173.357, "theta_prime": -156.660, "eta_base": -165.023, "theta_base": -76.503, "v0": -22.962, "v1": 36.393, "v2": -35.245, "v3": 22.849, "v4": -0.144, "amplitude": 37.172, "phase_angle": 161.468, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.007, "origin": [ 195.601, 185.943, 90.281 ], "x_axis": [ 0.296, -0.184, 0.937 ], "y_axis": [ -0.913, -0.343, 0.221 ], "z_axis": [ 0.280, -0.921, -0.270 ], "quaternion": [ 0.413, 0.691, -0.397, 0.441 ] } }, { "index": 2134, "index_chain": 2134, "chain_name": "A", "nt_resnum": 2323, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2323", "linked_nts": [ "///A/2322", "///A/2324" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop", "alpha": -78.299, "beta": 166.605, "gamma": 33.776, "delta": 75.747, "epsilon": -155.999, "zeta": -137.265, "epsilon_zeta": -18.734, "bb_type": "--", "chi": -95.132, "glyco_bond": "anti", "C5prime_xyz": [ -3.026, 7.675, -2.729 ], "P_xyz": [ -1.261, 8.242, -4.566 ], "form": ".", "ssZp": 0.762, "Dp": 4.479, "splay_angle": 36.151, "splay_distance": 6.024, "splay_ratio": 0.315, "d22": 4.277, "d64": 4.286, "eta": 133.521, "theta": -174.896, "eta_prime": 156.217, "theta_prime": -176.916, "eta_base": -114.548, "theta_base": -162.549, "v0": -7.464, "v1": -17.794, "v2": 34.720, "v3": -40.000, "v4": 29.956, "amplitude": 39.759, "phase_angle": 29.161, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.010, "filter_rmsd": 0.060, "frame": { "rmsd": 0.012, "origin": [ 195.079, 183.286, 91.942 ], "x_axis": [ -0.386, -0.498, 0.776 ], "y_axis": [ -0.563, -0.540, -0.626 ], "z_axis": [ 0.731, -0.679, -0.072 ], "quaternion": [ 0.024, 0.554, -0.479, 0.681 ] } }, { "index": 2135, "index_chain": 2135, "chain_name": "A", "nt_resnum": 2324, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2324", "linked_nts": [ "///A/2323", "///A/2325" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate", "alpha": 123.553, "beta": -105.434, "gamma": 171.227, "delta": 80.331, "epsilon": -134.670, "zeta": -76.795, "epsilon_zeta": -57.875, "bb_type": "BI", "chi": -161.456, "glyco_bond": "anti", "C5prime_xyz": [ -1.093, 8.568, 0.494 ], "P_xyz": [ -0.143, 8.805, -1.941 ], "form": ".", "ssZp": 4.431, "Dp": 4.793, "splay_angle": 26.307, "splay_distance": 4.956, "splay_ratio": 0.255, "d22": 5.840, "d64": 6.390, "eta": 155.774, "theta": -102.662, "eta_prime": 169.907, "theta_prime": -123.340, "eta_base": -166.649, "theta_base": -134.227, "v0": 9.106, "v1": -31.375, "v2": 40.611, "v3": -36.395, "v4": 17.200, "amplitude": 40.834, "phase_angle": 5.990, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.016, "origin": [ 196.924, 177.644, 90.912 ], "x_axis": [ -0.675, -0.308, 0.671 ], "y_axis": [ -0.658, -0.160, -0.736 ], "z_axis": [ 0.333, -0.938, -0.095 ], "quaternion": [ 0.133, 0.381, -0.634, 0.660 ] } }, { "index": 2136, "index_chain": 2136, "chain_name": "A", "nt_resnum": 2325, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2325", "linked_nts": [ "///A/2324", "///A/2326" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop", "alpha": 94.929, "beta": 142.425, "gamma": -72.380, "delta": 133.601, "epsilon": 76.964, "zeta": 72.432, "epsilon_zeta": 4.532, "bb_type": "--", "chi": -80.419, "glyco_bond": "anti", "C5prime_xyz": [ -3.032, 7.322, -2.763 ], "P_xyz": [ -2.936, 9.715, -3.865 ], "form": ".", "ssZp": 1.599, "Dp": 1.566, "splay_angle": 75.225, "splay_distance": 12.496, "splay_ratio": 0.621, "d22": 8.863, "d64": 11.505, "eta": -172.738, "theta": -138.495, "eta_prime": -140.151, "theta_prime": -159.869, "eta_base": -141.684, "theta_base": -146.237, "v0": -22.777, "v1": 32.488, "v2": -29.386, "v3": 17.038, "v4": 3.400, "amplitude": 32.349, "phase_angle": 155.285, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "7r", "suiteness": 0.010, "filter_rmsd": 0.105, "frame": { "rmsd": 0.006, "origin": [ 197.622, 174.318, 94.520 ], "x_axis": [ -0.860, 0.138, 0.490 ], "y_axis": [ -0.495, -0.456, -0.740 ], "z_axis": [ 0.122, -0.879, 0.461 ], "quaternion": [ 0.190, 0.184, -0.486, 0.833 ] } }, { "index": 2137, "index_chain": 2137, "chain_name": "A", "nt_resnum": 2326, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2326", "linked_nts": [ "///A/2325", "///A/2327" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": 135.149, "beta": 100.469, "gamma": -154.248, "delta": 76.965, "epsilon": 157.450, "zeta": 32.305, "epsilon_zeta": 125.144, "bb_type": "--", "chi": -169.697, "glyco_bond": "anti", "C5prime_xyz": [ -1.762, 8.813, 1.024 ], "P_xyz": [ -3.035, 11.100, 0.754 ], "form": ".", "ssZp": 4.073, "Dp": 4.115, "splay_angle": 32.441, "splay_distance": 5.893, "splay_ratio": 0.304, "d22": null, "d64": null, "eta": -139.517, "theta": -179.714, "eta_prime": -145.242, "theta_prime": -160.185, "eta_base": -111.997, "theta_base": -135.096, "v0": -2.239, "v1": -21.991, "v2": 36.429, "v3": -38.658, "v4": 25.757, "amplitude": 39.213, "phase_angle": 21.721, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.007, "origin": [ 199.328, 162.186, 96.976 ], "x_axis": [ -0.691, -0.702, -0.171 ], "y_axis": [ -0.272, 0.472, -0.839 ], "z_axis": [ 0.670, -0.533, -0.517 ], "quaternion": [ 0.257, -0.298, 0.818, -0.419 ] } }, { "index": 2138, "index_chain": 2138, "chain_name": "A", "nt_resnum": 2327, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2327", "linked_nts": [ "///A/2326", "///A/2328" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-donor,phosphate", "alpha": -155.490, "beta": 111.036, "gamma": 173.822, "delta": 83.271, "epsilon": -141.333, "zeta": -49.073, "epsilon_zeta": -92.260, "bb_type": "BI", "chi": -174.384, "glyco_bond": "anti", "C5prime_xyz": [ -1.183, 8.406, 1.403 ], "P_xyz": [ -1.185, 10.831, 0.428 ], "form": ".", "ssZp": 4.666, "Dp": 4.701, "splay_angle": 29.879, "splay_distance": 4.616, "splay_ratio": 0.260, "d22": null, "d64": null, "eta": -151.624, "theta": -173.209, "eta_prime": -134.762, "theta_prime": -156.561, "eta_base": -94.166, "theta_base": -94.885, "v0": 6.872, "v1": -27.747, "v2": 36.938, "v3": -33.971, "v4": 17.107, "amplitude": 37.323, "phase_angle": 8.238, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.044, "frame": { "rmsd": 0.008, "origin": [ 201.629, 156.808, 96.260 ], "x_axis": [ 0.100, -0.635, -0.766 ], "y_axis": [ 0.133, 0.772, -0.622 ], "z_axis": [ 0.986, -0.039, 0.161 ], "quaternion": [ 0.713, -0.204, 0.614, -0.269 ] } }, { "index": 2139, "index_chain": 2139, "chain_name": "A", "nt_resnum": 2328, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2328", "linked_nts": [ "///A/2327", "///A/2329" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,cap-acceptor", "alpha": -83.490, "beta": 177.819, "gamma": 57.186, "delta": 77.503, "epsilon": -132.166, "zeta": -51.318, "epsilon_zeta": -80.848, "bb_type": "BI", "chi": -170.618, "glyco_bond": "anti", "C5prime_xyz": [ -1.399, 8.579, 1.090 ], "P_xyz": [ 1.178, 9.031, 1.280 ], "form": ".", "ssZp": 4.662, "Dp": 4.784, "splay_angle": 38.211, "splay_distance": 5.779, "splay_ratio": 0.329, "d22": null, "d64": null, "eta": 152.877, "theta": -118.304, "eta_prime": 178.943, "theta_prime": -113.698, "eta_base": -102.058, "theta_base": -66.226, "v0": 5.458, "v1": -28.844, "v2": 40.126, "v3": -38.011, "v4": 20.478, "amplitude": 40.888, "phase_angle": 11.081, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.511, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 204.826, 154.786, 93.616 ], "x_axis": [ 0.126, 0.306, -0.944 ], "y_axis": [ 0.057, 0.947, 0.315 ], "z_axis": [ 0.990, -0.094, 0.101 ], "quaternion": [ 0.737, 0.138, 0.656, 0.084 ] } }, { "index": 2140, "index_chain": 2140, "chain_name": "A", "nt_resnum": 2329, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2329", "linked_nts": [ "///A/2328", "///A/2330" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,internal-loop,cap-donor", "alpha": -90.348, "beta": 157.806, "gamma": 93.224, "delta": 80.766, "epsilon": -160.857, "zeta": -24.280, "epsilon_zeta": -136.577, "bb_type": "BI", "chi": 177.730, "glyco_bond": "anti", "C5prime_xyz": [ -1.167, 8.273, 1.783 ], "P_xyz": [ 1.300, 8.934, 1.177 ], "form": ".", "ssZp": 4.589, "Dp": 4.622, "splay_angle": 45.306, "splay_distance": 7.850, "splay_ratio": 0.410, "d22": null, "d64": null, "eta": 160.430, "theta": -125.614, "eta_prime": -163.775, "theta_prime": -155.275, "eta_base": -81.524, "theta_base": -175.702, "v0": 5.854, "v1": -27.820, "v2": 38.017, "v3": -35.635, "v4": 18.816, "amplitude": 38.611, "phase_angle": 10.069, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.044, "frame": { "rmsd": 0.018, "origin": [ 208.302, 157.320, 89.757 ], "x_axis": [ 0.130, 0.978, -0.163 ], "y_axis": [ -0.012, 0.166, 0.986 ], "z_axis": [ 0.991, -0.126, 0.033 ], "quaternion": [ 0.576, 0.482, 0.501, 0.429 ] } }, { "index": 2141, "index_chain": 2141, "chain_name": "A", "nt_resnum": 2330, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2330", "linked_nts": [ "///A/2329", "///A/2331" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,bulge,cap-acceptor", "alpha": -165.411, "beta": 95.817, "gamma": -170.152, "delta": 77.533, "epsilon": -145.913, "zeta": -46.635, "epsilon_zeta": -99.278, "bb_type": "BI", "chi": 158.358, "glyco_bond": "anti", "C5prime_xyz": [ -2.170, 7.790, 2.646 ], "P_xyz": [ -3.030, 10.270, 2.660 ], "form": ".", "ssZp": 4.213, "Dp": 4.662, "splay_angle": 48.263, "splay_distance": 6.792, "splay_ratio": 0.414, "d22": null, "d64": null, "eta": 176.408, "theta": -157.574, "eta_prime": 170.726, "theta_prime": -132.045, "eta_base": 159.344, "theta_base": -55.702, "v0": 2.315, "v1": -26.001, "v2": 38.563, "v3": -38.265, "v4": 22.522, "amplitude": 39.980, "phase_angle": 15.301, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 211.194, 151.470, 85.394 ], "x_axis": [ -0.224, 0.851, -0.476 ], "y_axis": [ -0.204, 0.436, 0.876 ], "z_axis": [ 0.953, 0.294, 0.075 ], "quaternion": [ 0.567, 0.257, 0.630, 0.465 ] } }, { "index": 2142, "index_chain": 2142, "chain_name": "A", "nt_resnum": 2331, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2331", "linked_nts": [ "///A/2330", "///A/2332" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,bulge,cap-donor", "alpha": -170.226, "beta": -146.039, "gamma": 129.319, "delta": 145.388, "epsilon": -147.786, "zeta": -79.219, "epsilon_zeta": -68.567, "bb_type": "BI", "chi": -152.811, "glyco_bond": "anti", "C5prime_xyz": [ -1.900, 8.619, 0.531 ], "P_xyz": [ 0.730, 8.723, 0.597 ], "form": ".", "ssZp": 2.205, "Dp": 2.162, "splay_angle": 20.557, "splay_distance": 3.276, "splay_ratio": 0.182, "d22": null, "d64": null, "eta": 139.421, "theta": -65.050, "eta_prime": -151.126, "theta_prime": -138.501, "eta_base": -57.259, "theta_base": 162.747, "v0": -20.367, "v1": 33.712, "v2": -33.245, "v3": 22.319, "v4": -1.357, "amplitude": 34.682, "phase_angle": 163.451, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.100, "frame": { "rmsd": 0.012, "origin": [ 212.655, 157.830, 87.277 ], "x_axis": [ -0.209, 0.393, 0.895 ], "y_axis": [ 0.258, -0.861, 0.438 ], "z_axis": [ 0.943, 0.323, 0.079 ], "quaternion": [ 0.046, 0.627, 0.259, 0.733 ] } }, { "index": 2143, "index_chain": 2143, "chain_name": "A", "nt_resnum": 2332, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2332", "linked_nts": [ "///A/2331", "///A/2333" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop", "alpha": 155.865, "beta": 147.691, "gamma": 116.538, "delta": 83.383, "epsilon": 170.146, "zeta": 29.266, "epsilon_zeta": 140.880, "bb_type": "--", "chi": -110.471, "glyco_bond": "anti", "C5prime_xyz": [ -1.464, 8.006, -2.241 ], "P_xyz": [ -0.797, 7.286, -4.685 ], "form": ".", "ssZp": 2.432, "Dp": 4.290, "splay_angle": 26.145, "splay_distance": 4.483, "splay_ratio": 0.267, "d22": null, "d64": null, "eta": 67.417, "theta": -65.657, "eta_prime": 116.482, "theta_prime": -99.717, "eta_base": 96.098, "theta_base": 148.473, "v0": 6.924, "v1": -27.072, "v2": 35.817, "v3": -32.723, "v4": 16.325, "amplitude": 36.150, "phase_angle": 7.775, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 212.799, 157.483, 84.023 ], "x_axis": [ -0.134, 0.140, 0.981 ], "y_axis": [ 0.912, -0.369, 0.177 ], "z_axis": [ 0.387, 0.919, -0.079 ], "quaternion": [ -0.324, 0.573, 0.459, 0.597 ] } }, { "index": 2144, "index_chain": 2144, "chain_name": "A", "nt_resnum": 2333, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2333", "linked_nts": [ "///A/2332", null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "break,syn,~C2'-endo,non-pair-contact,ss-non-loop,phosphate", "alpha": 177.651, "beta": -147.868, "gamma": 20.200, "delta": 147.332, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": 41.280, "glyco_bond": "syn", "C5prime_xyz": [ -5.438, 3.684, 0.168 ], "P_xyz": [ -6.539, 2.345, -1.811 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": -20.779, "v1": 35.374, "v2": -35.620, "v3": 24.560, "v4": -2.580, "amplitude": 36.847, "phase_angle": 165.177, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 216.230, 159.403, 81.868 ], "x_axis": [ -0.972, 0.225, 0.064 ], "y_axis": [ 0.059, -0.029, 0.998 ], "z_axis": [ 0.226, 0.974, 0.015 ], "quaternion": [ 0.058, 0.102, 0.694, 0.710 ] } }, { "index": 2145, "index_chain": 2145, "chain_name": "A", "nt_resnum": 2341, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2341", "linked_nts": [ null, "///A/2342" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-stack,ss-non-loop", "alpha": null, "beta": -98.257, "gamma": 145.437, "delta": 85.287, "epsilon": -60.216, "zeta": -156.835, "epsilon_zeta": 96.618, "bb_type": "BII", "chi": -135.471, "glyco_bond": "anti", "C5prime_xyz": [ -1.627, 8.671, -0.943 ], "P_xyz": [ 0.036, 7.576, -2.640 ], "form": ".", "ssZp": 1.941, "Dp": 4.162, "splay_angle": 32.903, "splay_distance": 6.483, "splay_ratio": 0.404, "d22": 8.246, "d64": 6.547, "eta": null, "theta": -177.915, "eta_prime": null, "theta_prime": -159.643, "eta_base": null, "theta_base": -133.971, "v0": -0.784, "v1": -19.708, "v2": 31.338, "v3": -32.686, "v4": 21.167, "amplitude": 33.330, "phase_angle": 19.908, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 222.942, 165.623, 92.608 ], "x_axis": [ -0.355, -0.375, 0.856 ], "y_axis": [ -0.934, 0.181, -0.308 ], "z_axis": [ -0.040, -0.909, -0.414 ], "quaternion": [ -0.321, -0.468, 0.698, -0.436 ] } }, { "index": 2146, "index_chain": 2146, "chain_name": "A", "nt_resnum": 2342, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2342", "linked_nts": [ "///A/2341", "///A/2343" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-pair-contact,ss-non-loop", "alpha": -96.769, "beta": 153.897, "gamma": 57.395, "delta": 147.527, "epsilon": -99.426, "zeta": -85.266, "epsilon_zeta": -14.159, "bb_type": "--", "chi": 80.457, "glyco_bond": "syn", "C5prime_xyz": [ -4.913, 4.752, 2.136 ], "P_xyz": [ -4.608, 2.152, 2.400 ], "form": ".", "ssZp": -0.607, "Dp": 0.883, "splay_angle": 59.401, "splay_distance": 9.777, "splay_ratio": 0.496, "d22": null, "d64": null, "eta": -174.126, "theta": -81.112, "eta_prime": -167.728, "theta_prime": -124.512, "eta_base": -156.341, "theta_base": -125.716, "v0": -18.486, "v1": 32.926, "v2": -33.934, "v3": 24.234, "v4": -3.798, "amplitude": 34.774, "phase_angle": 167.381, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.072, "frame": { "rmsd": 0.012, "origin": [ 218.103, 163.155, 89.068 ], "x_axis": [ 0.928, -0.372, 0.013 ], "y_axis": [ -0.059, -0.181, -0.982 ], "z_axis": [ 0.368, 0.910, -0.190 ], "quaternion": [ 0.624, -0.758, 0.142, -0.126 ] } }, { "index": 2147, "index_chain": 2147, "chain_name": "A", "nt_resnum": 2343, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2343", "linked_nts": [ "///A/2342", "///A/2344" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,bulge", "alpha": -142.216, "beta": 113.353, "gamma": 115.641, "delta": 84.518, "epsilon": -155.650, "zeta": -58.652, "epsilon_zeta": -96.998, "bb_type": "BI", "chi": -176.532, "glyco_bond": "anti", "C5prime_xyz": [ -1.453, 8.384, 1.476 ], "P_xyz": [ 0.027, 9.492, -0.384 ], "form": "A", "ssZp": 4.548, "Dp": 4.589, "splay_angle": 24.202, "splay_distance": 3.725, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 119.741, "theta": -149.556, "eta_prime": 163.770, "theta_prime": -157.455, "eta_base": 174.340, "theta_base": -120.488, "v0": 4.882, "v1": -25.466, "v2": 35.128, "v3": -33.302, "v4": 17.992, "amplitude": 35.781, "phase_angle": 10.965, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 210.855, 156.715, 87.809 ], "x_axis": [ 0.098, 0.698, 0.709 ], "y_axis": [ 0.050, 0.708, -0.704 ], "z_axis": [ -0.994, 0.105, 0.035 ], "quaternion": [ 0.678, -0.298, -0.627, 0.239 ] } }, { "index": 2148, "index_chain": 2148, "chain_name": "A", "nt_resnum": 2344, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2344", "linked_nts": [ "///A/2343", "///A/2345" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,internal-loop", "alpha": -78.793, "beta": -170.474, "gamma": 53.740, "delta": 82.273, "epsilon": -176.132, "zeta": -87.842, "epsilon_zeta": -88.290, "bb_type": "BI", "chi": -162.059, "glyco_bond": "anti", "C5prime_xyz": [ -1.092, 8.645, 0.667 ], "P_xyz": [ 1.457, 8.875, 1.258 ], "form": ".", "ssZp": 4.378, "Dp": 4.422, "splay_angle": 39.523, "splay_distance": 6.389, "splay_ratio": 0.344, "d22": 6.347, "d64": 7.912, "eta": 163.519, "theta": -145.159, "eta_prime": -177.097, "theta_prime": -149.303, "eta_base": -118.527, "theta_base": 153.561, "v0": 3.638, "v1": -24.969, "v2": 35.697, "v3": -34.538, "v4": 19.504, "amplitude": 36.641, "phase_angle": 13.036, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.711, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 207.848, 157.374, 89.907 ], "x_axis": [ 0.094, 0.995, -0.021 ], "y_axis": [ -0.053, -0.016, -0.998 ], "z_axis": [ -0.994, 0.095, 0.052 ], "quaternion": [ 0.532, -0.514, -0.458, 0.493 ] } }, { "index": 2149, "index_chain": 2149, "chain_name": "A", "nt_resnum": 2345, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2345", "linked_nts": [ "///A/2344", "///A/2346" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-stack,non-pair-contact,internal-loop,cap-donor", "alpha": -149.831, "beta": -107.975, "gamma": 50.358, "delta": 149.219, "epsilon": -80.564, "zeta": 179.242, "epsilon_zeta": 100.194, "bb_type": "BII", "chi": -124.052, "glyco_bond": "anti", "C5prime_xyz": [ -2.364, 8.606, -0.985 ], "P_xyz": [ -1.288, 9.761, 1.114 ], "form": ".", "ssZp": 0.381, "Dp": 0.532, "splay_angle": 63.148, "splay_distance": 9.561, "splay_ratio": 0.527, "d22": 7.496, "d64": 9.216, "eta": 141.559, "theta": -140.071, "eta_prime": 155.329, "theta_prime": -136.374, "eta_base": 106.078, "theta_base": -84.409, "v0": -25.552, "v1": 40.273, "v2": -38.747, "v3": 24.979, "v4": 0.099, "amplitude": 40.967, "phase_angle": 161.050, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.100, "frame": { "rmsd": 0.006, "origin": [ 206.788, 151.435, 92.011 ], "x_axis": [ 0.924, -0.177, -0.340 ], "y_axis": [ -0.309, 0.178, -0.934 ], "z_axis": [ 0.226, 0.968, 0.110 ], "quaternion": [ 0.744, -0.640, 0.190, 0.044 ] } }, { "index": 2150, "index_chain": 2150, "chain_name": "A", "nt_resnum": 2346, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2346", "linked_nts": [ "///A/2345", "///A/2347" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-acceptor", "alpha": -58.883, "beta": 105.463, "gamma": 65.112, "delta": 81.451, "epsilon": 167.492, "zeta": -80.007, "epsilon_zeta": -112.501, "bb_type": "BI", "chi": -156.684, "glyco_bond": "anti", "C5prime_xyz": [ -1.578, 8.828, 0.304 ], "P_xyz": [ 0.654, 8.343, -0.981 ], "form": ".", "ssZp": 4.147, "Dp": 4.195, "splay_angle": 75.518, "splay_distance": 10.902, "splay_ratio": 0.612, "d22": null, "d64": null, "eta": 168.141, "theta": -163.028, "eta_prime": -148.655, "theta_prime": 164.926, "eta_base": -81.194, "theta_base": -177.111, "v0": 0.545, "v1": -22.686, "v2": 34.934, "v3": -35.487, "v4": 22.055, "amplitude": 36.670, "phase_angle": 17.699, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4a", "suiteness": 0.010, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 203.663, 160.333, 90.441 ], "x_axis": [ -0.322, 0.547, -0.773 ], "y_axis": [ -0.645, -0.724, -0.244 ], "z_axis": [ -0.693, 0.419, 0.586 ], "quaternion": [ 0.367, -0.452, 0.054, 0.811 ] } }, { "index": 2151, "index_chain": 2151, "chain_name": "A", "nt_resnum": 2347, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2347", "linked_nts": [ "///A/2346", "///A/2348" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart", "alpha": 174.155, "beta": 114.214, "gamma": -121.731, "delta": 76.970, "epsilon": -109.049, "zeta": 29.855, "epsilon_zeta": 221.096, "bb_type": "--", "chi": 50.759, "glyco_bond": "syn", "C5prime_xyz": [ -5.442, 3.817, 1.205 ], "P_xyz": [ -8.075, 3.834, 1.202 ], "form": ".", "ssZp": -2.502, "Dp": 4.663, "splay_angle": 103.169, "splay_distance": 13.550, "splay_ratio": 0.788, "d22": null, "d64": null, "eta": -162.291, "theta": -73.941, "eta_prime": 167.936, "theta_prime": -95.162, "eta_base": 162.089, "theta_base": -101.353, "v0": -2.799, "v1": -21.036, "v2": 35.451, "v3": -38.120, "v4": 25.749, "amplitude": 38.427, "phase_angle": 22.696, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 200.084, 160.578, 100.736 ], "x_axis": [ 0.526, 0.224, 0.820 ], "y_axis": [ 0.187, -0.972, 0.146 ], "z_axis": [ 0.830, 0.076, -0.553 ], "quaternion": [ 0.020, 0.873, 0.118, 0.472 ] } }, { "index": 2152, "index_chain": 2152, "chain_name": "A", "nt_resnum": 2348, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2348", "linked_nts": [ "///A/2347", "///A/2349" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart", "alpha": 152.082, "beta": 115.069, "gamma": -37.361, "delta": 151.241, "epsilon": -151.129, "zeta": 149.219, "epsilon_zeta": 59.651, "bb_type": "--", "chi": -120.093, "glyco_bond": "anti", "C5prime_xyz": [ -1.346, 8.366, -1.071 ], "P_xyz": [ -0.260, 9.737, 0.895 ], "form": ".", "ssZp": 1.855, "Dp": 1.896, "splay_angle": 38.388, "splay_distance": 6.392, "splay_ratio": 0.400, "d22": null, "d64": null, "eta": -91.636, "theta": 146.394, "eta_prime": -33.968, "theta_prime": 142.962, "eta_base": -17.085, "theta_base": 118.686, "v0": -12.883, "v1": 29.572, "v2": -34.052, "v3": 27.527, "v4": -9.403, "amplitude": 34.099, "phase_angle": 176.982, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.006, "origin": [ 188.383, 161.644, 93.986 ], "x_axis": [ -0.458, -0.774, -0.438 ], "y_axis": [ 0.751, -0.600, 0.276 ], "z_axis": [ -0.476, -0.203, 0.856 ], "quaternion": [ -0.446, -0.268, 0.021, 0.853 ] } }, { "index": 2153, "index_chain": 2153, "chain_name": "A", "nt_resnum": 2349, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2349", "linked_nts": [ "///A/2348", "///A/2350" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,BII,non-pair-contact,internal-loop,cap-donor,phosphate", "alpha": 118.078, "beta": -167.564, "gamma": 179.445, "delta": 148.587, "epsilon": -61.147, "zeta": -170.110, "epsilon_zeta": 108.964, "bb_type": "BII", "chi": 25.586, "glyco_bond": "syn", "C5prime_xyz": [ -5.352, 3.692, -0.650 ], "P_xyz": [ -5.946, 1.226, 0.002 ], "form": ".", "ssZp": 0.083, "Dp": 0.217, "splay_angle": 35.890, "splay_distance": 6.297, "splay_ratio": 0.411, "d22": null, "d64": null, "eta": -132.478, "theta": 88.346, "eta_prime": -174.489, "theta_prime": 95.412, "eta_base": 156.941, "theta_base": 114.786, "v0": -18.460, "v1": 34.023, "v2": -35.703, "v3": 26.076, "v4": -5.012, "amplitude": 36.374, "phase_angle": 168.982, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 194.245, 163.773, 95.390 ], "x_axis": [ -0.165, 0.677, -0.717 ], "y_axis": [ 0.683, 0.603, 0.412 ], "z_axis": [ 0.712, -0.422, -0.562 ], "quaternion": [ 0.468, 0.446, 0.763, -0.003 ] } }, { "index": 2154, "index_chain": 2154, "chain_name": "A", "nt_resnum": 2350, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2350", "linked_nts": [ "///A/2349", "///A/2351" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,cap-acceptor,phosphate", "alpha": 174.220, "beta": 98.262, "gamma": 43.051, "delta": 84.066, "epsilon": -74.864, "zeta": -34.492, "epsilon_zeta": -40.372, "bb_type": "--", "chi": 82.598, "glyco_bond": "syn", "C5prime_xyz": [ -4.630, 4.800, 2.725 ], "P_xyz": [ -2.820, 3.085, 3.516 ], "form": ".", "ssZp": 0.518, "Dp": 4.328, "splay_angle": 57.502, "splay_distance": 8.118, "splay_ratio": 0.482, "d22": null, "d64": null, "eta": 110.660, "theta": 2.893, "eta_prime": 102.462, "theta_prime": -8.910, "eta_base": 145.960, "theta_base": -28.093, "v0": -1.409, "v1": -20.117, "v2": 32.631, "v3": -34.382, "v4": 22.575, "amplitude": 34.918, "phase_angle": 20.850, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 200.189, 164.027, 97.451 ], "x_axis": [ -0.406, -0.798, -0.446 ], "y_axis": [ 0.574, -0.602, 0.555 ], "z_axis": [ -0.711, -0.031, 0.702 ], "quaternion": [ -0.417, -0.352, 0.159, 0.823 ] } }, { "index": 2155, "index_chain": 2155, "chain_name": "A", "nt_resnum": 2351, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2351", "linked_nts": [ "///A/2350", "///A/2352" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-pair-contact,internal-loop,cap-acceptor", "alpha": -123.035, "beta": -96.701, "gamma": 32.371, "delta": 81.026, "epsilon": -150.017, "zeta": -128.732, "epsilon_zeta": -21.285, "bb_type": "--", "chi": -86.704, "glyco_bond": "--", "C5prime_xyz": [ -2.061, 6.983, -3.152 ], "P_xyz": [ 0.277, 8.166, -3.165 ], "form": ".", "ssZp": 0.021, "Dp": 4.679, "splay_angle": 32.170, "splay_distance": 5.162, "splay_ratio": 0.287, "d22": null, "d64": null, "eta": 123.839, "theta": 176.924, "eta_prime": 149.932, "theta_prime": -168.274, "eta_base": -156.026, "theta_base": 149.529, "v0": 8.191, "v1": -29.156, "v2": 38.060, "v3": -34.253, "v4": 16.393, "amplitude": 38.305, "phase_angle": 6.477, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.043, "frame": { "rmsd": 0.011, "origin": [ 196.414, 165.603, 104.463 ], "x_axis": [ 0.282, -0.825, 0.490 ], "y_axis": [ 0.905, 0.398, 0.149 ], "z_axis": [ -0.318, 0.402, 0.859 ], "quaternion": [ 0.797, -0.079, -0.254, -0.543 ] } }, { "index": 2156, "index_chain": 2156, "chain_name": "A", "nt_resnum": 2352, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2352", "linked_nts": [ "///A/2351", "///A/2353" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BI,non-pair-contact,internal-loop", "alpha": -3.324, "beta": 123.459, "gamma": 30.439, "delta": 141.517, "epsilon": 171.063, "zeta": -96.551, "epsilon_zeta": -92.386, "bb_type": "BI", "chi": -68.715, "glyco_bond": "--", "C5prime_xyz": [ -3.387, 7.017, -2.944 ], "P_xyz": [ -0.946, 7.336, -3.810 ], "form": ".", "ssZp": 1.955, "Dp": 2.267, "splay_angle": 29.614, "splay_distance": 5.037, "splay_ratio": 0.256, "d22": null, "d64": null, "eta": 149.589, "theta": -156.788, "eta_prime": -176.227, "theta_prime": 123.028, "eta_base": 144.896, "theta_base": 98.274, "v0": -25.537, "v1": 38.118, "v2": -35.297, "v3": 21.431, "v4": 2.274, "amplitude": 38.143, "phase_angle": 157.725, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 196.712, 170.523, 105.997 ], "x_axis": [ -0.179, -0.979, 0.095 ], "y_axis": [ 0.894, -0.122, 0.430 ], "z_axis": [ -0.410, 0.162, 0.898 ], "quaternion": [ 0.632, 0.106, -0.200, -0.741 ] } }, { "index": 2157, "index_chain": 2157, "chain_name": "A", "nt_resnum": 2353, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2353", "linked_nts": [ "///A/2352", "///A/2354" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -70.609, "beta": 32.795, "gamma": -149.303, "delta": 74.407, "epsilon": -113.186, "zeta": 130.117, "epsilon_zeta": 116.697, "bb_type": "BII", "chi": -95.986, "glyco_bond": "anti", "C5prime_xyz": [ -2.958, 7.653, -2.719 ], "P_xyz": [ -5.589, 7.922, -2.606 ], "form": ".", "ssZp": -0.197, "Dp": 4.603, "splay_angle": 113.153, "splay_distance": 12.986, "splay_ratio": 0.857, "d22": null, "d64": null, "eta": -150.482, "theta": -39.266, "eta_prime": 156.517, "theta_prime": -72.524, "eta_base": 133.311, "theta_base": 171.158, "v0": -6.463, "v1": -18.751, "v2": 35.350, "v3": -40.216, "v4": 29.535, "amplitude": 39.978, "phase_angle": 27.841, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.008, "origin": [ 197.081, 175.077, 103.878 ], "x_axis": [ -0.873, 0.465, 0.150 ], "y_axis": [ 0.378, 0.449, 0.810 ], "z_axis": [ 0.309, 0.763, -0.567 ], "quaternion": [ 0.047, 0.248, 0.850, 0.463 ] } }, { "index": 2158, "index_chain": 2158, "chain_name": "A", "nt_resnum": 2354, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2354", "linked_nts": [ "///A/2353", "///A/2355" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart", "alpha": -70.282, "beta": -112.793, "gamma": 127.674, "delta": 154.489, "epsilon": -83.520, "zeta": -120.274, "epsilon_zeta": 36.754, "bb_type": "--", "chi": -19.927, "glyco_bond": "syn", "C5prime_xyz": [ -4.113, 4.660, -2.798 ], "P_xyz": [ -2.013, 3.110, -3.173 ], "form": ".", "ssZp": -0.810, "Dp": 0.787, "splay_angle": 87.077, "splay_distance": 12.855, "splay_ratio": 0.692, "d22": null, "d64": null, "eta": -26.417, "theta": -82.358, "eta_prime": 69.081, "theta_prime": -129.510, "eta_base": 138.513, "theta_base": -66.652, "v0": -13.203, "v1": 31.109, "v2": -36.086, "v3": 29.371, "v4": -10.369, "amplitude": 36.117, "phase_angle": 177.642, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 201.116, 183.472, 112.927 ], "x_axis": [ -0.869, 0.314, -0.382 ], "y_axis": [ -0.446, -0.831, 0.333 ], "z_axis": [ -0.213, 0.460, 0.862 ], "quaternion": [ 0.201, -0.158, 0.210, 0.944 ] } }, { "index": 2159, "index_chain": 2159, "chain_name": "A", "nt_resnum": 2355, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2355", "linked_nts": [ "///A/2354", "///A/2356" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart", "alpha": -111.521, "beta": 141.911, "gamma": 97.156, "delta": 81.375, "epsilon": -142.259, "zeta": -69.901, "epsilon_zeta": -72.358, "bb_type": "BI", "chi": -115.512, "glyco_bond": "anti", "C5prime_xyz": [ -1.720, 8.092, -2.027 ], "P_xyz": [ -0.765, 7.191, -4.319 ], "form": ".", "ssZp": 2.087, "Dp": 4.725, "splay_angle": 34.197, "splay_distance": 5.452, "splay_ratio": 0.297, "d22": null, "d64": null, "eta": 160.309, "theta": -122.409, "eta_prime": -169.043, "theta_prime": -158.815, "eta_base": -158.716, "theta_base": 123.540, "v0": 7.276, "v1": -28.788, "v2": 38.248, "v3": -35.027, "v4": 17.514, "amplitude": 38.621, "phase_angle": 7.968, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.110, "frame": { "rmsd": 0.011, "origin": [ 195.586, 171.881, 113.500 ], "x_axis": [ 0.451, -0.592, -0.668 ], "y_axis": [ 0.732, -0.183, 0.656 ], "z_axis": [ -0.510, -0.785, 0.351 ], "quaternion": [ 0.636, 0.566, 0.062, -0.520 ] } }, { "index": 2160, "index_chain": 2160, "chain_name": "A", "nt_resnum": 2356, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2356", "linked_nts": [ "///A/2355", "///A/2357" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": 176.650, "beta": 165.054, "gamma": 116.841, "delta": 88.110, "epsilon": 177.922, "zeta": -76.433, "epsilon_zeta": -105.645, "bb_type": "BI", "chi": -122.198, "glyco_bond": "anti", "C5prime_xyz": [ -1.279, 8.212, -1.615 ], "P_xyz": [ 0.128, 7.861, -3.818 ], "form": ".", "ssZp": 3.059, "Dp": 4.304, "splay_angle": 33.153, "splay_distance": 5.407, "splay_ratio": 0.342, "d22": null, "d64": null, "eta": 95.103, "theta": -142.644, "eta_prime": 123.863, "theta_prime": -166.836, "eta_base": 81.010, "theta_base": -100.957, "v0": 7.697, "v1": -26.067, "v2": 33.437, "v3": -29.877, "v4": 14.068, "amplitude": 33.600, "phase_angle": 5.650, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.013, "origin": [ 193.008, 171.616, 118.297 ], "x_axis": [ 0.431, 0.532, -0.729 ], "y_axis": [ 0.789, -0.615, 0.017 ], "z_axis": [ -0.439, -0.582, -0.685 ], "quaternion": [ 0.181, 0.826, 0.400, -0.353 ] } }, { "index": 2161, "index_chain": 2161, "chain_name": "A", "nt_resnum": 2357, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2357", "linked_nts": [ "///A/2356", "///A/2358" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-canonical,non-pair-contact,internal-loop", "alpha": 152.454, "beta": -153.723, "gamma": 162.613, "delta": 78.688, "epsilon": -167.951, "zeta": 71.845, "epsilon_zeta": 120.205, "bb_type": "--", "chi": 26.647, "glyco_bond": "syn", "C5prime_xyz": [ -5.380, 3.304, -0.209 ], "P_xyz": [ -5.892, 1.591, 1.699 ], "form": ".", "ssZp": -4.338, "Dp": 4.540, "splay_angle": 54.611, "splay_distance": 9.111, "splay_ratio": 0.483, "d22": null, "d64": null, "eta": 148.908, "theta": -69.100, "eta_prime": 166.464, "theta_prime": -97.619, "eta_base": -93.000, "theta_base": -131.683, "v0": 3.121, "v1": -26.276, "v2": 38.225, "v3": -37.404, "v4": 21.562, "amplitude": 39.414, "phase_angle": 14.108, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.416, "filter_rmsd": 0.042, "frame": { "rmsd": 0.007, "origin": [ 195.756, 168.519, 114.820 ], "x_axis": [ -0.379, 0.913, -0.150 ], "y_axis": [ -0.792, -0.236, 0.562 ], "z_axis": [ 0.478, 0.331, 0.813 ], "quaternion": [ 0.547, 0.106, 0.287, 0.779 ] } }, { "index": 2162, "index_chain": 2162, "chain_name": "A", "nt_resnum": 2358, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2358", "linked_nts": [ "///A/2357", "///A/2359" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,internal-loop,cap-donor", "alpha": -81.348, "beta": -69.103, "gamma": -48.881, "delta": 140.969, "epsilon": -104.400, "zeta": -116.213, "epsilon_zeta": 11.813, "bb_type": "--", "chi": 147.686, "glyco_bond": "anti", "C5prime_xyz": [ -3.213, 7.567, 2.670 ], "P_xyz": [ -5.263, 9.263, 2.863 ], "form": ".", "ssZp": -0.338, "Dp": 1.124, "splay_angle": 51.264, "splay_distance": 7.925, "splay_ratio": 0.439, "d22": null, "d64": null, "eta": -153.008, "theta": 165.678, "eta_prime": -124.545, "theta_prime": 140.469, "eta_base": -130.682, "theta_base": 74.709, "v0": -29.285, "v1": 40.633, "v2": -35.785, "v3": 19.760, "v4": 5.742, "amplitude": 40.131, "phase_angle": 153.090, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.045, "frame": { "rmsd": 0.014, "origin": [ 194.248, 167.910, 105.856 ], "x_axis": [ 0.622, 0.773, 0.123 ], "y_axis": [ -0.197, 0.002, 0.980 ], "z_axis": [ 0.758, -0.634, 0.154 ], "quaternion": [ 0.667, 0.605, 0.238, 0.364 ] } }, { "index": 2163, "index_chain": 2163, "chain_name": "A", "nt_resnum": 2359, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2359", "linked_nts": [ "///A/2358", "///A/2360" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop,cap-acceptor", "alpha": -94.794, "beta": 75.050, "gamma": 38.087, "delta": 82.657, "epsilon": -120.192, "zeta": -82.734, "epsilon_zeta": -37.457, "bb_type": "--", "chi": -172.021, "glyco_bond": "anti", "C5prime_xyz": [ -2.360, 8.861, 0.998 ], "P_xyz": [ -0.019, 8.044, 1.853 ], "form": ".", "ssZp": 3.971, "Dp": 4.091, "splay_angle": 35.297, "splay_distance": 5.812, "splay_ratio": 0.303, "d22": null, "d64": null, "eta": 81.866, "theta": -137.006, "eta_prime": 83.619, "theta_prime": -150.801, "eta_base": 34.671, "theta_base": -167.153, "v0": -13.268, "v1": -8.076, "v2": 24.801, "v3": -33.213, "v4": 29.331, "amplitude": 33.159, "phase_angle": 41.586, "puckering": "C4'-exo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 191.936, 170.556, 112.959 ], "x_axis": [ 0.490, -0.312, 0.814 ], "y_axis": [ -0.577, -0.816, 0.034 ], "z_axis": [ 0.654, -0.486, -0.580 ], "quaternion": [ 0.153, 0.849, -0.262, 0.432 ] } }, { "index": 2164, "index_chain": 2164, "chain_name": "A", "nt_resnum": 2360, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2360", "linked_nts": [ "///A/2359", "///A/2361" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -130.026, "beta": 85.028, "gamma": 149.569, "delta": 154.027, "epsilon": -79.527, "zeta": -82.804, "epsilon_zeta": 3.277, "bb_type": "--", "chi": -178.585, "glyco_bond": "anti", "C5prime_xyz": [ -1.830, 7.904, 2.071 ], "P_xyz": [ -0.067, 9.483, 0.907 ], "form": ".", "ssZp": 0.694, "Dp": 0.703, "splay_angle": 22.175, "splay_distance": 5.090, "splay_ratio": 0.318, "d22": null, "d64": null, "eta": -117.353, "theta": -130.931, "eta_prime": -153.576, "theta_prime": -120.321, "eta_base": -166.970, "theta_base": -103.387, "v0": -10.069, "v1": 29.743, "v2": -36.877, "v3": 32.170, "v4": -14.075, "amplitude": 36.936, "phase_angle": 183.244, "puckering": "C3'-exo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 192.942, 172.116, 107.451 ], "x_axis": [ 0.161, -0.132, 0.978 ], "y_axis": [ -0.600, -0.800, -0.009 ], "z_axis": [ 0.784, -0.585, -0.208 ], "quaternion": [ 0.196, 0.736, -0.248, 0.598 ] } }, { "index": 2165, "index_chain": 2165, "chain_name": "A", "nt_resnum": 2361, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2361", "linked_nts": [ "///A/2360", "///A/2362" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-stack,non-canonical,non-pair-contact,internal-loop,phosphate", "alpha": -106.541, "beta": -179.178, "gamma": 43.541, "delta": 144.093, "epsilon": -5.686, "zeta": 66.362, "epsilon_zeta": 287.951, "bb_type": "--", "chi": 42.738, "glyco_bond": "syn", "C5prime_xyz": [ -5.472, 3.798, 0.257 ], "P_xyz": [ -5.590, 1.615, -1.226 ], "form": ".", "ssZp": 0.526, "Dp": 0.732, "splay_angle": 81.084, "splay_distance": 11.532, "splay_ratio": 0.653, "d22": null, "d64": null, "eta": 120.667, "theta": 161.094, "eta_prime": -167.233, "theta_prime": 113.169, "eta_base": -148.543, "theta_base": 171.731, "v0": -21.073, "v1": 35.113, "v2": -34.938, "v3": 23.797, "v4": -1.924, "amplitude": 36.313, "phase_angle": 164.181, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.046, "filter_rmsd": 0.063, "frame": { "rmsd": 0.002, "origin": [ 192.479, 168.606, 103.793 ], "x_axis": [ 0.947, 0.133, 0.292 ], "y_axis": [ 0.321, -0.410, -0.854 ], "z_axis": [ 0.006, 0.902, -0.431 ], "quaternion": [ 0.526, -0.835, -0.136, -0.089 ] } }, { "index": 2166, "index_chain": 2166, "chain_name": "A", "nt_resnum": 2362, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2362", "linked_nts": [ "///A/2361", "///A/2363" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -168.365, "beta": 128.373, "gamma": 164.973, "delta": 82.738, "epsilon": -116.569, "zeta": -116.236, "epsilon_zeta": -0.333, "bb_type": "--", "chi": 49.846, "glyco_bond": "syn", "C5prime_xyz": [ -5.224, 3.410, 1.226 ], "P_xyz": [ -6.433, 3.549, 3.568 ], "form": ".", "ssZp": -2.622, "Dp": 4.698, "splay_angle": 127.723, "splay_distance": 12.058, "splay_ratio": 0.899, "d22": null, "d64": null, "eta": -139.141, "theta": 134.779, "eta_prime": -170.628, "theta_prime": 97.034, "eta_base": -100.085, "theta_base": -33.250, "v0": 1.776, "v1": -24.560, "v2": 36.555, "v3": -36.578, "v4": 22.003, "amplitude": 38.027, "phase_angle": 15.993, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 197.452, 168.456, 93.389 ], "x_axis": [ 0.891, 0.219, 0.397 ], "y_axis": [ -0.452, 0.366, 0.813 ], "z_axis": [ 0.033, -0.904, 0.425 ], "quaternion": [ 0.819, 0.524, -0.111, 0.205 ] } }, { "index": 2167, "index_chain": 2167, "chain_name": "A", "nt_resnum": 2363, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2363", "linked_nts": [ "///A/2362", "///A/2364" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,non-stack,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart", "alpha": 7.709, "beta": -93.542, "gamma": 119.218, "delta": 85.177, "epsilon": -166.720, "zeta": 118.275, "epsilon_zeta": 75.005, "bb_type": "--", "chi": -81.942, "glyco_bond": "--", "C5prime_xyz": [ -2.503, 6.828, -3.243 ], "P_xyz": [ -0.850, 4.809, -3.646 ], "form": ".", "ssZp": -0.040, "Dp": 4.485, "splay_angle": 104.795, "splay_distance": 14.298, "splay_ratio": 0.795, "d22": null, "d64": null, "eta": 9.275, "theta": 95.889, "eta_prime": 27.663, "theta_prime": -124.863, "eta_base": 122.749, "theta_base": -135.375, "v0": 5.586, "v1": -25.043, "v2": 33.864, "v3": -31.604, "v4": 16.493, "amplitude": 34.336, "phase_angle": 9.515, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.007, "origin": [ 185.640, 167.187, 91.325 ], "x_axis": [ 0.289, -0.813, 0.505 ], "y_axis": [ 0.414, 0.582, 0.700 ], "z_axis": [ -0.863, 0.007, 0.505 ], "quaternion": [ 0.771, 0.225, -0.444, -0.398 ] } }, { "index": 2168, "index_chain": 2168, "chain_name": "A", "nt_resnum": 2364, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2364", "linked_nts": [ "///A/2363", "///A/2365" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": 81.203, "beta": 106.137, "gamma": 61.879, "delta": 82.815, "epsilon": 177.997, "zeta": 163.162, "epsilon_zeta": 14.835, "bb_type": "--", "chi": -139.624, "glyco_bond": "anti", "C5prime_xyz": [ -1.310, 8.667, -0.715 ], "P_xyz": [ 0.713, 7.634, -2.042 ], "form": ".", "ssZp": 3.812, "Dp": 4.336, "splay_angle": 68.873, "splay_distance": 8.724, "splay_ratio": 0.620, "d22": null, "d64": null, "eta": -82.637, "theta": 131.897, "eta_prime": 137.536, "theta_prime": -178.778, "eta_base": 130.307, "theta_base": -120.615, "v0": 2.484, "v1": -23.743, "v2": 34.707, "v3": -34.209, "v4": 20.045, "amplitude": 35.881, "phase_angle": 14.702, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 187.746, 171.226, 104.878 ], "x_axis": [ -0.249, -0.841, -0.480 ], "y_axis": [ 0.470, 0.328, -0.819 ], "z_axis": [ 0.846, -0.430, 0.314 ], "quaternion": [ 0.590, -0.165, 0.562, -0.556 ] } }, { "index": 2169, "index_chain": 2169, "chain_name": "A", "nt_resnum": 2365, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2365", "linked_nts": [ "///A/2364", "///A/2366" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart", "alpha": 73.749, "beta": 118.322, "gamma": 71.530, "delta": 86.000, "epsilon": -145.729, "zeta": -113.104, "epsilon_zeta": -32.625, "bb_type": "BI", "chi": -49.294, "glyco_bond": "syn", "C5prime_xyz": [ -3.159, 4.887, -3.445 ], "P_xyz": [ -2.471, 2.347, -3.457 ], "form": ".", "ssZp": -2.998, "Dp": 4.740, "splay_angle": 105.653, "splay_distance": 13.775, "splay_ratio": 0.798, "d22": null, "d64": null, "eta": -78.513, "theta": 179.504, "eta_prime": -140.258, "theta_prime": -115.715, "eta_base": 173.319, "theta_base": -73.771, "v0": 12.413, "v1": -31.490, "v2": 37.637, "v3": -31.525, "v4": 12.137, "amplitude": 37.637, "phase_angle": 359.881, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.034, "frame": { "rmsd": 0.011, "origin": [ 195.972, 169.824, 102.334 ], "x_axis": [ 0.079, -0.751, -0.656 ], "y_axis": [ 0.766, 0.467, -0.442 ], "z_axis": [ 0.638, -0.467, 0.612 ], "quaternion": [ 0.734, 0.009, 0.440, -0.516 ] } }, { "index": 2170, "index_chain": 2170, "chain_name": "A", "nt_resnum": 2366, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2366", "linked_nts": [ "///A/2365", "///A/2367" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop,splayed-apart", "alpha": -107.600, "beta": -100.157, "gamma": 154.792, "delta": 150.310, "epsilon": -179.176, "zeta": 49.137, "epsilon_zeta": 131.687, "bb_type": "--", "chi": -175.517, "glyco_bond": "anti", "C5prime_xyz": [ -2.158, 8.276, 1.770 ], "P_xyz": [ 0.414, 7.764, 1.685 ], "form": ".", "ssZp": 0.423, "Dp": 2.098, "splay_angle": 16.752, "splay_distance": 2.602, "splay_ratio": 0.147, "d22": null, "d64": null, "eta": -118.513, "theta": 33.162, "eta_prime": -106.855, "theta_prime": -99.443, "eta_base": -158.542, "theta_base": -98.163, "v0": -20.799, "v1": 37.154, "v2": -38.242, "v3": 27.181, "v4": -4.327, "amplitude": 39.195, "phase_angle": 167.336, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.019, "frame": { "rmsd": 0.019, "origin": [ 196.951, 176.473, 90.309 ], "x_axis": [ -0.759, -0.484, 0.436 ], "y_axis": [ 0.583, -0.207, 0.786 ], "z_axis": [ -0.290, 0.850, 0.439 ], "quaternion": [ -0.344, 0.047, 0.528, 0.775 ] } }, { "index": 2171, "index_chain": 2171, "chain_name": "A", "nt_resnum": 2367, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2367", "linked_nts": [ "///A/2366", "///A/2368" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,ss-non-loop,phosphate", "alpha": -91.503, "beta": -57.078, "gamma": -147.227, "delta": 154.164, "epsilon": -137.992, "zeta": -77.792, "epsilon_zeta": -60.200, "bb_type": "BI", "chi": -112.762, "glyco_bond": "anti", "C5prime_xyz": [ -2.304, 8.239, -1.457 ], "P_xyz": [ -2.404, 7.688, -4.077 ], "form": ".", "ssZp": 1.391, "Dp": 1.477, "splay_angle": 32.966, "splay_distance": 5.322, "splay_ratio": 0.316, "d22": null, "d64": null, "eta": 170.199, "theta": 168.248, "eta_prime": 179.374, "theta_prime": 157.076, "eta_base": -151.573, "theta_base": -173.521, "v0": -18.012, "v1": 34.937, "v2": -37.571, "v3": 28.248, "v4": -6.655, "amplitude": 38.026, "phase_angle": 171.129, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.033, "frame": { "rmsd": 0.033, "origin": [ 196.186, 178.952, 90.505 ], "x_axis": [ -0.435, -0.372, 0.820 ], "y_axis": [ 0.769, 0.321, 0.554 ], "z_axis": [ -0.469, 0.871, 0.146 ], "quaternion": [ 0.508, -0.156, -0.634, -0.561 ] } }, { "index": 2172, "index_chain": 2172, "chain_name": "A", "nt_resnum": 2368, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2368", "linked_nts": [ "///A/2367", "///A/2369" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop", "alpha": 169.399, "beta": 85.761, "gamma": 139.613, "delta": 80.804, "epsilon": -151.365, "zeta": -64.808, "epsilon_zeta": -86.557, "bb_type": "BI", "chi": -28.449, "glyco_bond": "syn", "C5prime_xyz": [ -4.357, 4.514, -2.868 ], "P_xyz": [ -6.255, 3.098, -1.741 ], "form": ".", "ssZp": -4.007, "Dp": 4.665, "splay_angle": 23.119, "splay_distance": 3.601, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 83.190, "theta": -140.526, "eta_prime": 124.371, "theta_prime": -127.693, "eta_base": 167.568, "theta_base": -129.885, "v0": 3.836, "v1": -25.978, "v2": 37.058, "v3": -35.842, "v4": 20.187, "amplitude": 38.024, "phase_angle": 12.945, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 196.671, 184.066, 89.112 ], "x_axis": [ -0.913, 0.403, -0.068 ], "y_axis": [ 0.387, 0.799, -0.460 ], "z_axis": [ -0.131, -0.446, -0.885 ], "quaternion": [ -0.017, 0.208, 0.948, -0.239 ] } }, { "index": 2173, "index_chain": 2173, "chain_name": "A", "nt_resnum": 2369, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2369", "linked_nts": [ "///A/2368", "///A/2370" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate", "alpha": 177.363, "beta": -126.030, "gamma": 138.799, "delta": 151.102, "epsilon": -126.001, "zeta": -80.544, "epsilon_zeta": -45.456, "bb_type": "--", "chi": -151.828, "glyco_bond": "anti", "C5prime_xyz": [ -2.299, 8.695, 0.514 ], "P_xyz": [ 0.271, 8.695, 1.021 ], "form": ".", "ssZp": 0.619, "Dp": 1.463, "splay_angle": 24.957, "splay_distance": 3.976, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": 148.098, "theta": -63.963, "eta_prime": -139.255, "theta_prime": -121.062, "eta_base": -122.375, "theta_base": -43.703, "v0": -24.858, "v1": 40.568, "v2": -39.746, "v3": 26.324, "v4": -1.197, "amplitude": 41.610, "phase_angle": 162.783, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.007, "origin": [ 195.286, 186.359, 91.518 ], "x_axis": [ 0.668, -0.708, 0.228 ], "y_axis": [ 0.729, 0.563, -0.389 ], "z_axis": [ 0.146, 0.426, 0.893 ], "quaternion": [ 0.884, -0.231, -0.023, -0.406 ] } }, { "index": 2174, "index_chain": 2174, "chain_name": "A", "nt_resnum": 2370, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2370", "linked_nts": [ "///A/2369", "///A/2371" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop", "alpha": -57.979, "beta": 163.006, "gamma": -34.214, "delta": 81.622, "epsilon": -131.179, "zeta": -161.132, "epsilon_zeta": 29.953, "bb_type": "--", "chi": 81.568, "glyco_bond": "syn", "C5prime_xyz": [ -4.777, 5.343, 2.706 ], "P_xyz": [ -6.636, 3.835, 3.765 ], "form": ".", "ssZp": -0.553, "Dp": 4.331, "splay_angle": 33.290, "splay_distance": 4.649, "splay_ratio": 0.286, "d22": null, "d64": null, "eta": 83.818, "theta": 160.336, "eta_prime": 111.208, "theta_prime": 179.084, "eta_base": -139.851, "theta_base": 131.598, "v0": -8.185, "v1": -14.530, "v2": 30.247, "v3": -35.756, "v4": 27.742, "amplitude": 35.493, "phase_angle": 31.548, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.020, "frame": { "rmsd": 0.020, "origin": [ 198.089, 188.669, 93.134 ], "x_axis": [ -0.316, -0.895, 0.314 ], "y_axis": [ -0.922, 0.367, 0.120 ], "z_axis": [ -0.223, -0.252, -0.942 ], "quaternion": [ -0.166, -0.561, 0.810, -0.041 ] } }, { "index": 2175, "index_chain": 2175, "chain_name": "A", "nt_resnum": 2371, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2371", "linked_nts": [ "///A/2370", "///A/2372" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop", "alpha": 91.043, "beta": -82.002, "gamma": -173.047, "delta": 156.532, "epsilon": -165.361, "zeta": -125.372, "epsilon_zeta": -39.990, "bb_type": "BI", "chi": -110.111, "glyco_bond": "anti", "C5prime_xyz": [ -2.017, 8.331, -1.589 ], "P_xyz": [ -0.641, 7.235, -3.539 ], "form": ".", "ssZp": 1.418, "Dp": 1.748, "splay_angle": 17.872, "splay_distance": 3.155, "splay_ratio": 0.162, "d22": 3.658, "d64": 3.166, "eta": 28.646, "theta": 24.556, "eta_prime": -128.451, "theta_prime": -172.629, "eta_base": 160.890, "theta_base": -96.684, "v0": -19.445, "v1": 38.276, "v2": -41.693, "v3": 31.375, "v4": -7.738, "amplitude": 42.129, "phase_angle": 171.749, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.059, "frame": { "rmsd": 0.009, "origin": [ 195.364, 190.140, 96.601 ], "x_axis": [ 0.787, -0.510, -0.348 ], "y_axis": [ 0.455, 0.860, -0.232 ], "z_axis": [ 0.417, 0.024, 0.908 ], "quaternion": [ 0.943, -0.068, 0.203, -0.256 ] } }, { "index": 2176, "index_chain": 2176, "chain_name": "A", "nt_resnum": 2372, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2372", "linked_nts": [ "///A/2371", "///A/2373" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-pair-contact,ss-non-loop,cap-acceptor,phosphate", "alpha": 17.017, "beta": 134.572, "gamma": -23.650, "delta": 140.536, "epsilon": -83.071, "zeta": 165.000, "epsilon_zeta": 111.929, "bb_type": "BII", "chi": -77.203, "glyco_bond": "anti", "C5prime_xyz": [ -3.336, 7.206, -2.825 ], "P_xyz": [ -2.016, 9.383, -3.425 ], "form": ".", "ssZp": 0.452, "Dp": 0.617, "splay_angle": 81.402, "splay_distance": 14.088, "splay_ratio": 0.654, "d22": 9.000, "d64": 11.093, "eta": 179.627, "theta": -156.810, "eta_prime": -154.635, "theta_prime": -155.948, "eta_base": -89.504, "theta_base": -142.160, "v0": -27.801, "v1": 37.912, "v2": -33.132, "v3": 17.964, "v4": 5.969, "amplitude": 37.449, "phase_angle": 152.220, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.007, "origin": [ 198.245, 189.757, 97.829 ], "x_axis": [ 0.895, 0.163, -0.415 ], "y_axis": [ -0.045, 0.959, 0.280 ], "z_axis": [ 0.443, -0.232, 0.866 ], "quaternion": [ 0.964, 0.132, 0.222, 0.054 ] } }, { "index": 2177, "index_chain": 2177, "chain_name": "A", "nt_resnum": 2373, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2373", "linked_nts": [ "///A/2372", "///A/2374" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,phosphate,splayed-apart", "alpha": 28.999, "beta": 135.170, "gamma": -73.965, "delta": 132.020, "epsilon": -88.053, "zeta": 104.347, "epsilon_zeta": 167.600, "bb_type": "--", "chi": -158.804, "glyco_bond": "anti", "C5prime_xyz": [ -2.413, 8.796, 0.600 ], "P_xyz": [ -3.292, 10.733, 2.148 ], "form": ".", "ssZp": 0.838, "Dp": 0.906, "splay_angle": 150.438, "splay_distance": 20.331, "splay_ratio": 0.967, "d22": null, "d64": null, "eta": -174.569, "theta": 81.933, "eta_prime": 177.941, "theta_prime": 84.903, "eta_base": -162.849, "theta_base": 96.750, "v0": -27.462, "v1": 35.682, "v2": -29.936, "v3": 14.917, "v4": 7.646, "amplitude": 35.011, "phase_angle": 148.767, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.012, "origin": [ 198.131, 191.666, 111.787 ], "x_axis": [ 0.667, -0.639, -0.384 ], "y_axis": [ -0.409, 0.116, -0.905 ], "z_axis": [ 0.623, 0.761, -0.184 ], "quaternion": [ 0.632, -0.659, 0.398, -0.091 ] } }, { "index": 2178, "index_chain": 2178, "chain_name": "A", "nt_resnum": 2374, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2374", "linked_nts": [ "///A/2373", "///A/2375" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -108.650, "beta": -169.801, "gamma": -172.148, "delta": 89.753, "epsilon": -43.941, "zeta": 71.235, "epsilon_zeta": 244.824, "bb_type": "--", "chi": 176.022, "glyco_bond": "anti", "C5prime_xyz": [ -2.432, 8.627, 1.565 ], "P_xyz": [ -1.267, 10.901, 0.886 ], "form": ".", "ssZp": 2.770, "Dp": 2.862, "splay_angle": 172.358, "splay_distance": 16.272, "splay_ratio": 0.998, "d22": null, "d64": null, "eta": -2.947, "theta": 80.846, "eta_prime": -27.092, "theta_prime": 55.698, "eta_base": -39.469, "theta_base": 108.408, "v0": -15.167, "v1": -3.689, "v2": 19.533, "v3": -28.743, "v4": 27.724, "amplitude": 29.477, "phase_angle": 48.499, "puckering": "C4'-exo", "sugar_class": "pucker-CHK", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 181.244, 198.433, 102.710 ], "x_axis": [ 0.006, 0.999, -0.040 ], "y_axis": [ 0.880, 0.013, 0.474 ], "z_axis": [ 0.475, -0.038, -0.879 ], "quaternion": [ 0.187, 0.684, 0.687, 0.159 ] } }, { "index": 2179, "index_chain": 2179, "chain_name": "A", "nt_resnum": 2375, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2375", "linked_nts": [ "///A/2374", "///A/2376" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-canonical,non-pair-contact,ss-non-loop,cap-acceptor,splayed-apart", "alpha": 49.472, "beta": -169.119, "gamma": 39.489, "delta": 148.590, "epsilon": -83.659, "zeta": -47.935, "epsilon_zeta": -35.724, "bb_type": "--", "chi": 37.161, "glyco_bond": "syn", "C5prime_xyz": [ -5.408, 3.583, 0.070 ], "P_xyz": [ -5.726, 1.681, -1.736 ], "form": ".", "ssZp": -0.364, "Dp": 0.435, "splay_angle": 122.198, "splay_distance": 17.103, "splay_ratio": 0.876, "d22": null, "d64": null, "eta": 1.966, "theta": -22.949, "eta_prime": 4.295, "theta_prime": -44.936, "eta_base": -54.595, "theta_base": 10.006, "v0": -20.620, "v1": 35.761, "v2": -36.310, "v3": 25.372, "v4": -3.233, "amplitude": 37.415, "phase_angle": 166.042, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 194.135, 188.972, 105.720 ], "x_axis": [ 0.878, -0.285, 0.385 ], "y_axis": [ -0.206, 0.502, 0.840 ], "z_axis": [ -0.433, -0.817, 0.382 ], "quaternion": [ 0.831, 0.499, -0.246, -0.024 ] } }, { "index": 2180, "index_chain": 2180, "chain_name": "A", "nt_resnum": 2376, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2376", "linked_nts": [ "///A/2375", "///A/2377" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,splayed-apart", "alpha": -70.111, "beta": -113.744, "gamma": 69.477, "delta": 143.565, "epsilon": -158.919, "zeta": -134.790, "epsilon_zeta": -24.130, "bb_type": "--", "chi": -103.141, "glyco_bond": "anti", "C5prime_xyz": [ -2.475, 8.288, -1.975 ], "P_xyz": [ -0.290, 9.448, -1.102 ], "form": ".", "ssZp": 2.287, "Dp": 2.183, "splay_angle": 17.283, "splay_distance": 3.157, "splay_ratio": 0.156, "d22": 3.774, "d64": 3.834, "eta": -162.718, "theta": -120.608, "eta_prime": -110.319, "theta_prime": -157.007, "eta_base": -147.076, "theta_base": -122.717, "v0": -27.433, "v1": 39.814, "v2": -36.212, "v3": 21.268, "v4": 3.667, "amplitude": 39.642, "phase_angle": 155.989, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.248, "filter_rmsd": 0.063, "frame": { "rmsd": 0.008, "origin": [ 180.274, 198.956, 104.896 ], "x_axis": [ -0.420, -0.891, -0.172 ], "y_axis": [ 0.660, -0.430, 0.616 ], "z_axis": [ -0.623, 0.146, 0.769 ], "quaternion": [ -0.479, -0.245, 0.235, 0.809 ] } }, { "index": 2181, "index_chain": 2181, "chain_name": "A", "nt_resnum": 2377, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2377", "linked_nts": [ "///A/2376", "///A/2378" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,multiplet,internal-loop,phosphate", "alpha": 93.254, "beta": -145.659, "gamma": -161.762, "delta": 77.964, "epsilon": -179.873, "zeta": 55.413, "epsilon_zeta": 124.714, "bb_type": "--", "chi": -163.053, "glyco_bond": "anti", "C5prime_xyz": [ -1.385, 8.704, 0.693 ], "P_xyz": [ -0.566, 10.467, -1.056 ], "form": ".", "ssZp": 4.457, "Dp": 4.467, "splay_angle": 28.486, "splay_distance": 5.462, "splay_ratio": 0.277, "d22": null, "d64": null, "eta": 150.615, "theta": -118.510, "eta_prime": 151.751, "theta_prime": -142.116, "eta_base": -154.160, "theta_base": -139.417, "v0": 1.980, "v1": -25.088, "v2": 37.509, "v3": -37.390, "v4": 22.313, "amplitude": 38.979, "phase_angle": 15.785, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "4n", "suiteness": 0.364, "filter_rmsd": 0.103, "frame": { "rmsd": 0.005, "origin": [ 177.546, 199.301, 106.447 ], "x_axis": [ -0.020, -0.993, 0.114 ], "y_axis": [ 0.758, 0.059, 0.649 ], "z_axis": [ -0.652, 0.099, 0.752 ], "quaternion": [ 0.669, 0.206, -0.286, -0.654 ] } }, { "index": 2182, "index_chain": 2182, "chain_name": "A", "nt_resnum": 2378, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2378", "linked_nts": [ "///A/2377", "///A/2379" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -78.606, "beta": -63.451, "gamma": -95.511, "delta": 83.326, "epsilon": -104.079, "zeta": -88.292, "epsilon_zeta": -15.787, "bb_type": "--", "chi": -176.482, "glyco_bond": "anti", "C5prime_xyz": [ -1.749, 8.571, 1.447 ], "P_xyz": [ -3.393, 10.594, 0.941 ], "form": ".", "ssZp": 4.429, "Dp": 4.554, "splay_angle": 32.325, "splay_distance": 5.610, "splay_ratio": 0.284, "d22": null, "d64": null, "eta": 145.011, "theta": -170.283, "eta_prime": 155.046, "theta_prime": -156.560, "eta_base": 170.152, "theta_base": -103.505, "v0": -1.183, "v1": -20.241, "v2": 32.603, "v3": -34.288, "v4": 22.426, "amplitude": 34.823, "phase_angle": 20.570, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 172.566, 197.355, 107.566 ], "x_axis": [ 0.437, -0.875, -0.209 ], "y_axis": [ 0.842, 0.316, 0.436 ], "z_axis": [ -0.316, -0.366, 0.875 ], "quaternion": [ 0.811, 0.248, -0.033, -0.530 ] } }, { "index": 2183, "index_chain": 2183, "chain_name": "A", "nt_resnum": 2379, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2379", "linked_nts": [ "///A/2378", "///A/2380" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": 101.873, "beta": -123.160, "gamma": -153.369, "delta": 80.418, "epsilon": -154.714, "zeta": -78.595, "epsilon_zeta": -76.119, "bb_type": "BI", "chi": 178.578, "glyco_bond": "anti", "C5prime_xyz": [ -1.500, 8.359, 1.766 ], "P_xyz": [ -0.674, 10.424, 0.371 ], "form": ".", "ssZp": 4.651, "Dp": 4.651, "splay_angle": 34.930, "splay_distance": 5.172, "splay_ratio": 0.304, "d22": null, "d64": null, "eta": 155.811, "theta": -164.990, "eta_prime": -174.594, "theta_prime": -151.309, "eta_base": -101.649, "theta_base": -109.558, "v0": 4.844, "v1": -27.802, "v2": 38.879, "v3": -37.092, "v4": 20.267, "amplitude": 39.699, "phase_angle": 11.669, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.060, "frame": { "rmsd": 0.009, "origin": [ 174.491, 192.572, 109.777 ], "x_axis": [ 0.943, -0.300, 0.141 ], "y_axis": [ 0.188, 0.834, 0.519 ], "z_axis": [ -0.274, -0.463, 0.843 ], "quaternion": [ 0.951, 0.258, -0.109, -0.128 ] } }, { "index": 2184, "index_chain": 2184, "chain_name": "A", "nt_resnum": 2380, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2380", "linked_nts": [ "///A/2379", "///A/2381" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -155.959, "beta": -146.620, "gamma": 143.374, "delta": 150.068, "epsilon": -119.280, "zeta": -106.950, "epsilon_zeta": -12.331, "bb_type": "--", "chi": -169.162, "glyco_bond": "anti", "C5prime_xyz": [ -2.127, 8.459, 1.464 ], "P_xyz": [ 0.396, 8.667, 2.157 ], "form": ".", "ssZp": 0.684, "Dp": 1.267, "splay_angle": 40.601, "splay_distance": 6.609, "splay_ratio": 0.347, "d22": null, "d64": null, "eta": -170.238, "theta": -102.948, "eta_prime": -135.909, "theta_prime": -153.292, "eta_base": -91.731, "theta_base": -139.388, "v0": -21.603, "v1": 37.291, "v2": -37.684, "v3": 26.224, "v4": -3.112, "amplitude": 38.888, "phase_angle": 165.702, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 176.021, 189.257, 113.441 ], "x_axis": [ 0.775, 0.633, -0.005 ], "y_axis": [ -0.631, 0.773, 0.058 ], "z_axis": [ 0.041, -0.042, 0.998 ], "quaternion": [ 0.942, 0.026, 0.012, 0.336 ] } }, { "index": 2185, "index_chain": 2185, "chain_name": "A", "nt_resnum": 2381, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2381", "linked_nts": [ "///A/2380", "///A/2382" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": 177.081, "beta": 147.228, "gamma": 119.500, "delta": 83.488, "epsilon": 147.604, "zeta": 40.194, "epsilon_zeta": 107.409, "bb_type": "--", "chi": -165.108, "glyco_bond": "anti", "C5prime_xyz": [ -0.752, 8.366, 0.824 ], "P_xyz": [ 0.977, 9.231, -0.960 ], "form": ".", "ssZp": 4.128, "Dp": 4.137, "splay_angle": 21.881, "splay_distance": 3.883, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 113.030, "theta": -115.136, "eta_prime": 153.112, "theta_prime": -140.087, "eta_base": -171.507, "theta_base": -114.885, "v0": 11.063, "v1": -30.638, "v2": 37.506, "v3": -32.158, "v4": 13.428, "amplitude": 37.527, "phase_angle": 1.928, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.014, "origin": [ 172.991, 184.022, 116.103 ], "x_axis": [ 0.447, 0.722, 0.528 ], "y_axis": [ -0.795, 0.591, -0.135 ], "z_axis": [ -0.410, -0.360, 0.838 ], "quaternion": [ 0.848, 0.066, -0.276, 0.447 ] } }, { "index": 2186, "index_chain": 2186, "chain_name": "A", "nt_resnum": 2382, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2382", "linked_nts": [ "///A/2381", "///A/2383" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": 172.491, "beta": 124.953, "gamma": 136.573, "delta": 83.184, "epsilon": -167.447, "zeta": -83.169, "epsilon_zeta": -84.278, "bb_type": "BI", "chi": 176.262, "glyco_bond": "anti", "C5prime_xyz": [ -1.361, 8.271, 1.892 ], "P_xyz": [ -0.039, 10.141, 0.619 ], "form": "A", "ssZp": 4.372, "Dp": 4.487, "splay_angle": 24.542, "splay_distance": 3.954, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 150.408, "theta": -165.150, "eta_prime": 179.650, "theta_prime": -161.564, "eta_base": -123.050, "theta_base": -137.453, "v0": 4.501, "v1": -25.098, "v2": 34.990, "v3": -33.395, "v4": 18.219, "amplitude": 35.714, "phase_angle": 11.554, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 174.131, 183.492, 119.777 ], "x_axis": [ -0.089, 0.938, 0.334 ], "y_axis": [ -0.933, 0.038, -0.357 ], "z_axis": [ -0.347, -0.343, 0.873 ], "quaternion": [ 0.675, -0.005, -0.252, 0.693 ] } }, { "index": 2187, "index_chain": 2187, "chain_name": "A", "nt_resnum": 2383, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2383", "linked_nts": [ "///A/2382", "///A/2384" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,internal-loop", "alpha": -177.216, "beta": -135.591, "gamma": 148.234, "delta": 80.412, "epsilon": -103.839, "zeta": -21.712, "epsilon_zeta": -82.127, "bb_type": "--", "chi": -179.529, "glyco_bond": "anti", "C5prime_xyz": [ -1.963, 8.605, 1.572 ], "P_xyz": [ 0.472, 9.398, 1.063 ], "form": ".", "ssZp": 4.257, "Dp": 4.411, "splay_angle": 25.423, "splay_distance": 4.697, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": 178.436, "theta": -103.823, "eta_prime": -166.667, "theta_prime": -123.508, "eta_base": -133.202, "theta_base": -113.575, "v0": -4.552, "v1": -17.973, "v2": 32.388, "v3": -35.973, "v4": 25.460, "amplitude": 35.949, "phase_angle": 25.718, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.049, "frame": { "rmsd": 0.016, "origin": [ 175.381, 182.922, 123.485 ], "x_axis": [ -0.613, 0.764, 0.199 ], "y_axis": [ -0.749, -0.482, -0.456 ], "z_axis": [ -0.252, -0.428, 0.868 ], "quaternion": [ 0.439, -0.015, -0.257, 0.861 ] } }, { "index": 2188, "index_chain": 2188, "chain_name": "A", "nt_resnum": 2384, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2384", "linked_nts": [ "///A/2383", "///A/2385" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": -100.573, "beta": 64.292, "gamma": -168.331, "delta": 82.574, "epsilon": -98.050, "zeta": -111.358, "epsilon_zeta": 13.308, "bb_type": "--", "chi": 161.203, "glyco_bond": "anti", "C5prime_xyz": [ -1.824, 8.077, 2.495 ], "P_xyz": [ -2.454, 10.479, 1.641 ], "form": ".", "ssZp": 4.296, "Dp": 4.453, "splay_angle": 28.484, "splay_distance": 4.528, "splay_ratio": 0.246, "d22": 3.868, "d64": 3.142, "eta": -175.167, "theta": 179.079, "eta_prime": -171.360, "theta_prime": -157.840, "eta_base": -141.412, "theta_base": -96.445, "v0": -2.172, "v1": -19.365, "v2": 32.283, "v3": -34.439, "v4": 23.076, "amplitude": 34.840, "phase_angle": 22.089, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.070, "frame": { "rmsd": 0.012, "origin": [ 174.963, 183.389, 128.140 ], "x_axis": [ -0.782, 0.620, -0.065 ], "y_axis": [ -0.454, -0.637, -0.623 ], "z_axis": [ -0.428, -0.457, 0.780 ], "quaternion": [ 0.300, -0.138, -0.302, 0.894 ] } }, { "index": 2189, "index_chain": 2189, "chain_name": "A", "nt_resnum": 2385, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2385", "linked_nts": [ "///A/2384", "///A/2386" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor", "alpha": 20.082, "beta": 121.322, "gamma": -14.104, "delta": 78.707, "epsilon": -130.023, "zeta": 1.002, "epsilon_zeta": 228.975, "bb_type": "--", "chi": -155.532, "glyco_bond": "anti", "C5prime_xyz": [ -1.422, 8.803, 0.237 ], "P_xyz": [ 0.763, 9.082, 1.643 ], "form": ".", "ssZp": 4.201, "Dp": 4.746, "splay_angle": 34.695, "splay_distance": 6.418, "splay_ratio": 0.314, "d22": 5.271, "d64": 6.497, "eta": 141.621, "theta": -85.513, "eta_prime": 163.741, "theta_prime": -84.015, "eta_base": -129.582, "theta_base": -54.955, "v0": 1.613, "v1": -24.786, "v2": 37.298, "v3": -37.389, "v4": 22.548, "amplitude": 38.858, "phase_angle": 16.286, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.004, "origin": [ 171.153, 182.769, 130.506 ], "x_axis": [ -0.568, 0.009, -0.823 ], "y_axis": [ 0.458, -0.827, -0.326 ], "z_axis": [ -0.683, -0.562, 0.466 ], "quaternion": [ -0.133, -0.445, -0.263, 0.846 ] } }, { "index": 2190, "index_chain": 2190, "chain_name": "A", "nt_resnum": 2386, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2386", "linked_nts": [ "///A/2385", "///A/2387" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,cap-donor,splayed-apart", "alpha": -113.393, "beta": 99.896, "gamma": -150.214, "delta": 141.892, "epsilon": -80.594, "zeta": -102.271, "epsilon_zeta": 21.677, "bb_type": "--", "chi": -134.687, "glyco_bond": "anti", "C5prime_xyz": [ -1.902, 8.721, -0.501 ], "P_xyz": [ -2.656, 10.784, -1.940 ], "form": ".", "ssZp": 0.600, "Dp": 0.657, "splay_angle": 123.233, "splay_distance": 16.932, "splay_ratio": 0.880, "d22": null, "d64": null, "eta": -88.573, "theta": -143.332, "eta_prime": -71.026, "theta_prime": -163.117, "eta_base": -33.041, "theta_base": 168.634, "v0": -21.935, "v1": 34.180, "v2": -32.735, "v3": 20.991, "v4": 0.411, "amplitude": 34.712, "phase_angle": 160.572, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.005, "origin": [ 166.869, 181.316, 125.953 ], "x_axis": [ -0.471, -0.562, -0.680 ], "y_axis": [ 0.315, -0.827, 0.465 ], "z_axis": [ -0.824, 0.005, 0.567 ], "quaternion": [ -0.259, -0.444, 0.139, 0.846 ] } }, { "index": 2191, "index_chain": 2191, "chain_name": "A", "nt_resnum": 2387, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2387", "linked_nts": [ "///A/2386", "///A/2388" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,phosphate,splayed-apart", "alpha": 24.677, "beta": -116.092, "gamma": 40.959, "delta": 84.920, "epsilon": -148.812, "zeta": -93.907, "epsilon_zeta": -54.906, "bb_type": "BI", "chi": -136.037, "glyco_bond": "anti", "C5prime_xyz": [ -1.095, 8.520, -0.836 ], "P_xyz": [ 1.083, 9.004, 0.564 ], "form": ".", "ssZp": 3.493, "Dp": 4.624, "splay_angle": 18.904, "splay_distance": 3.082, "splay_ratio": 0.172, "d22": null, "d64": null, "eta": -69.860, "theta": -158.043, "eta_prime": -32.962, "theta_prime": -149.602, "eta_base": -4.267, "theta_base": -117.856, "v0": 6.119, "v1": -26.129, "v2": 35.206, "v3": -32.532, "v4": 16.696, "amplitude": 35.636, "phase_angle": 8.906, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 173.386, 183.069, 141.482 ], "x_axis": [ 0.893, -0.449, -0.029 ], "y_axis": [ -0.307, -0.561, -0.769 ], "z_axis": [ 0.329, 0.696, -0.639 ], "quaternion": [ -0.416, 0.879, -0.215, 0.085 ] } }, { "index": 2192, "index_chain": 2192, "chain_name": "A", "nt_resnum": 2388, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2388", "linked_nts": [ "///A/2387", "///A/2389" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate", "alpha": -41.438, "beta": 146.379, "gamma": 48.281, "delta": 83.148, "epsilon": -147.443, "zeta": -76.260, "epsilon_zeta": -71.183, "bb_type": "BI", "chi": -138.344, "glyco_bond": "anti", "C5prime_xyz": [ -1.268, 8.627, -0.747 ], "P_xyz": [ 1.225, 8.293, -1.478 ], "form": "A", "ssZp": 3.589, "Dp": 4.652, "splay_angle": 31.119, "splay_distance": 4.939, "splay_ratio": 0.269, "d22": null, "d64": null, "eta": 168.438, "theta": -137.169, "eta_prime": -177.066, "theta_prime": -142.096, "eta_base": -139.655, "theta_base": -118.495, "v0": 5.965, "v1": -26.843, "v2": 36.494, "v3": -33.991, "v4": 17.723, "amplitude": 37.007, "phase_angle": 9.555, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.310, "filter_rmsd": 0.066, "frame": { "rmsd": 0.007, "origin": [ 174.768, 184.653, 139.228 ], "x_axis": [ 0.667, -0.668, -0.331 ], "y_axis": [ -0.554, -0.148, -0.819 ], "z_axis": [ 0.498, 0.729, -0.469 ], "quaternion": [ 0.512, -0.756, 0.404, -0.055 ] } }, { "index": 2193, "index_chain": 2193, "chain_name": "A", "nt_resnum": 2389, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2389", "linked_nts": [ "///A/2388", "///A/2390" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": -51.512, "beta": 165.604, "gamma": 44.142, "delta": 79.405, "epsilon": -107.287, "zeta": -80.604, "epsilon_zeta": -26.683, "bb_type": "--", "chi": 176.592, "glyco_bond": "anti", "C5prime_xyz": [ -1.545, 8.338, 1.856 ], "P_xyz": [ 0.872, 8.450, 2.844 ], "form": ".", "ssZp": 4.722, "Dp": 4.747, "splay_angle": 36.163, "splay_distance": 5.478, "splay_ratio": 0.310, "d22": null, "d64": null, "eta": 175.581, "theta": -114.626, "eta_prime": -175.008, "theta_prime": -105.200, "eta_base": -136.898, "theta_base": -45.297, "v0": 2.073, "v1": -24.494, "v2": 36.429, "v3": -36.249, "v4": 21.557, "amplitude": 37.816, "phase_angle": 15.570, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.730, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 178.126, 186.411, 136.062 ], "x_axis": [ -0.105, -0.978, -0.179 ], "y_axis": [ -0.960, 0.146, -0.237 ], "z_axis": [ 0.258, 0.147, -0.955 ], "quaternion": [ 0.147, -0.653, 0.743, -0.031 ] } }, { "index": 2194, "index_chain": 2194, "chain_name": "A", "nt_resnum": 2390, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2390", "linked_nts": [ "///A/2389", "///A/2391" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -40.530, "beta": 137.823, "gamma": 51.283, "delta": 80.626, "epsilon": -141.304, "zeta": -119.035, "epsilon_zeta": -22.269, "bb_type": "--", "chi": -179.680, "glyco_bond": "anti", "C5prime_xyz": [ -1.771, 8.484, 1.613 ], "P_xyz": [ 0.819, 8.580, 1.896 ], "form": ".", "ssZp": 4.545, "Dp": 4.594, "splay_angle": 24.146, "splay_distance": 3.647, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 154.256, "theta": -133.885, "eta_prime": -172.072, "theta_prime": -130.559, "eta_base": -84.598, "theta_base": -83.137, "v0": -1.017, "v1": -21.543, "v2": 34.591, "v3": -36.152, "v4": 23.464, "amplitude": 36.849, "phase_angle": 20.162, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.607, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 176.375, 183.209, 131.978 ], "x_axis": [ -0.950, -0.281, -0.139 ], "y_axis": [ -0.292, 0.954, 0.068 ], "z_axis": [ 0.113, 0.105, -0.988 ], "quaternion": [ 0.064, -0.145, 0.986, 0.044 ] } }, { "index": 2195, "index_chain": 2195, "chain_name": "A", "nt_resnum": 2391, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2391", "linked_nts": [ "///A/2390", "///A/2392" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop", "alpha": 32.671, "beta": 103.511, "gamma": 5.107, "delta": 78.179, "epsilon": -131.961, "zeta": -112.906, "epsilon_zeta": -19.055, "bb_type": "--", "chi": -157.578, "glyco_bond": "anti", "C5prime_xyz": [ -1.698, 8.875, 0.320 ], "P_xyz": [ 0.635, 8.618, 1.460 ], "form": ".", "ssZp": 4.206, "Dp": 4.651, "splay_angle": 19.528, "splay_distance": 3.129, "splay_ratio": 0.170, "d22": null, "d64": null, "eta": 171.162, "theta": -154.640, "eta_prime": -175.772, "theta_prime": -150.987, "eta_base": -114.571, "theta_base": -153.878, "v0": -2.590, "v1": -20.852, "v2": 35.039, "v3": -37.578, "v4": 25.282, "amplitude": 37.917, "phase_angle": 22.468, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 174.868, 182.927, 128.669 ], "x_axis": [ -0.854, 0.516, 0.066 ], "y_axis": [ 0.520, 0.843, 0.138 ], "z_axis": [ 0.016, 0.152, -0.988 ], "quaternion": [ -0.013, 0.270, 0.960, 0.076 ] } }, { "index": 2196, "index_chain": 2196, "chain_name": "A", "nt_resnum": 2392, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2392", "linked_nts": [ "///A/2391", "///A/2393" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,internal-loop", "alpha": -44.862, "beta": 136.033, "gamma": 58.525, "delta": 82.576, "epsilon": -113.211, "zeta": -119.011, "epsilon_zeta": 5.800, "bb_type": "--", "chi": -140.963, "glyco_bond": "anti", "C5prime_xyz": [ -1.906, 8.804, -0.613 ], "P_xyz": [ 0.560, 8.957, -1.467 ], "form": ".", "ssZp": 3.160, "Dp": 4.455, "splay_angle": 14.738, "splay_distance": 2.943, "splay_ratio": 0.161, "d22": 4.661, "d64": 3.175, "eta": -178.859, "theta": -157.650, "eta_prime": -174.123, "theta_prime": -158.448, "eta_base": -172.702, "theta_base": -128.316, "v0": -4.017, "v1": -17.810, "v2": 31.577, "v3": -34.747, "v4": 24.460, "amplitude": 34.855, "phase_angle": 25.046, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.527, "filter_rmsd": 0.097, "frame": { "rmsd": 0.013, "origin": [ 175.472, 181.853, 125.793 ], "x_axis": [ -0.716, 0.688, 0.121 ], "y_axis": [ 0.659, 0.722, -0.208 ], "z_axis": [ -0.230, -0.069, -0.971 ], "quaternion": [ -0.095, 0.365, 0.923, -0.075 ] } }, { "index": 2197, "index_chain": 2197, "chain_name": "A", "nt_resnum": 2393, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2393", "linked_nts": [ "///A/2392", "///A/2394" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop", "alpha": -55.818, "beta": 121.340, "gamma": 60.525, "delta": 83.243, "epsilon": -155.270, "zeta": -101.071, "epsilon_zeta": -54.199, "bb_type": "BI", "chi": -132.869, "glyco_bond": "anti", "C5prime_xyz": [ -1.468, 8.644, -1.090 ], "P_xyz": [ 0.699, 7.879, -2.354 ], "form": ".", "ssZp": 3.343, "Dp": 4.520, "splay_angle": 36.428, "splay_distance": 5.728, "splay_ratio": 0.341, "d22": null, "d64": null, "eta": 151.720, "theta": -138.713, "eta_prime": 169.841, "theta_prime": -127.487, "eta_base": -147.419, "theta_base": -96.685, "v0": 1.754, "v1": -22.876, "v2": 34.146, "v3": -34.062, "v4": 20.395, "amplitude": 35.495, "phase_angle": 15.845, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.470, "filter_rmsd": 0.064, "frame": { "rmsd": 0.007, "origin": [ 175.749, 182.732, 122.998 ], "x_axis": [ -0.333, 0.937, 0.107 ], "y_axis": [ 0.751, 0.332, -0.571 ], "z_axis": [ -0.570, -0.110, -0.814 ], "quaternion": [ -0.215, 0.536, 0.787, -0.216 ] } }, { "index": 2198, "index_chain": 2198, "chain_name": "A", "nt_resnum": 2394, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2394", "linked_nts": [ "///A/2393", "///A/2395" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BI,non-stack,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate", "alpha": -132.497, "beta": -110.414, "gamma": 87.591, "delta": 152.317, "epsilon": 179.441, "zeta": -97.499, "epsilon_zeta": -83.061, "bb_type": "BI", "chi": 169.568, "glyco_bond": "--", "C5prime_xyz": [ -2.337, 7.735, 2.417 ], "P_xyz": [ -1.429, 5.814, 3.955 ], "form": ".", "ssZp": 0.049, "Dp": 2.055, "splay_angle": 71.790, "splay_distance": 12.010, "splay_ratio": 0.598, "d22": null, "d64": null, "eta": 148.445, "theta": -118.690, "eta_prime": 168.540, "theta_prime": -161.220, "eta_base": -143.702, "theta_base": 173.127, "v0": -18.487, "v1": 35.685, "v2": -38.175, "v3": 28.415, "v4": -6.521, "amplitude": 38.683, "phase_angle": 170.701, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 175.408, 186.095, 118.374 ], "x_axis": [ 0.031, -0.470, 0.882 ], "y_axis": [ 0.354, -0.820, -0.449 ], "z_axis": [ 0.935, 0.326, 0.140 ], "quaternion": [ -0.296, 0.654, -0.044, 0.695 ] } }, { "index": 2199, "index_chain": 2199, "chain_name": "A", "nt_resnum": 2395, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2395", "linked_nts": [ "///A/2394", "///A/2396" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate", "alpha": -158.593, "beta": 116.230, "gamma": -152.645, "delta": 79.545, "epsilon": -153.517, "zeta": -51.237, "epsilon_zeta": -102.280, "bb_type": "BI", "chi": 174.129, "glyco_bond": "anti", "C5prime_xyz": [ -2.168, 8.431, 1.861 ], "P_xyz": [ -3.119, 10.870, 1.989 ], "form": ".", "ssZp": 4.292, "Dp": 4.447, "splay_angle": 63.863, "splay_distance": 8.987, "splay_ratio": 0.529, "d22": null, "d64": null, "eta": -144.128, "theta": -149.560, "eta_prime": -167.087, "theta_prime": -125.674, "eta_base": 175.282, "theta_base": -59.810, "v0": -5.256, "v1": -17.613, "v2": 32.453, "v3": -36.385, "v4": 26.198, "amplitude": 36.325, "phase_angle": 26.696, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.007, "origin": [ 166.317, 187.804, 110.715 ], "x_axis": [ -0.007, 0.798, 0.602 ], "y_axis": [ 0.948, -0.185, 0.257 ], "z_axis": [ 0.317, 0.573, -0.756 ], "quaternion": [ -0.114, 0.695, 0.628, 0.330 ] } }, { "index": 2200, "index_chain": 2200, "chain_name": "A", "nt_resnum": 2396, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2396", "linked_nts": [ "///A/2395", "///A/2397" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop", "alpha": 157.925, "beta": -126.496, "gamma": 137.045, "delta": 81.776, "epsilon": -128.150, "zeta": -115.482, "epsilon_zeta": -12.668, "bb_type": "--", "chi": 179.069, "glyco_bond": "anti", "C5prime_xyz": [ -1.273, 8.359, 1.742 ], "P_xyz": [ 1.219, 8.419, 0.955 ], "form": ".", "ssZp": 4.725, "Dp": 4.752, "splay_angle": 6.958, "splay_distance": 1.203, "splay_ratio": 0.072, "d22": null, "d64": null, "eta": 141.656, "theta": -123.608, "eta_prime": -167.661, "theta_prime": -127.797, "eta_base": -74.373, "theta_base": -63.231, "v0": 4.723, "v1": -25.975, "v2": 36.184, "v3": -34.478, "v4": 18.788, "amplitude": 36.920, "phase_angle": 11.456, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 174.010, 192.430, 111.132 ], "x_axis": [ 0.941, -0.337, 0.036 ], "y_axis": [ -0.275, -0.821, -0.500 ], "z_axis": [ 0.198, 0.461, -0.865 ], "quaternion": [ -0.252, 0.952, -0.161, 0.061 ] } }, { "index": 2201, "index_chain": 2201, "chain_name": "A", "nt_resnum": 2397, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2397", "linked_nts": [ "///A/2396", "///A/2398" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,internal-loop", "alpha": 165.097, "beta": -136.853, "gamma": 164.154, "delta": 144.206, "epsilon": -113.989, "zeta": -113.876, "epsilon_zeta": -0.113, "bb_type": "--", "chi": -109.953, "glyco_bond": "anti", "C5prime_xyz": [ -1.346, 8.159, -1.770 ], "P_xyz": [ 0.442, 7.175, -3.443 ], "form": ".", "ssZp": 1.137, "Dp": 1.852, "splay_angle": 49.914, "splay_distance": 8.419, "splay_ratio": 0.427, "d22": null, "d64": null, "eta": -173.483, "theta": -112.966, "eta_prime": -152.431, "theta_prime": -146.250, "eta_base": -77.262, "theta_base": -144.588, "v0": -13.044, "v1": 26.617, "v2": -29.273, "v3": 22.455, "v4": -6.127, "amplitude": 29.493, "phase_angle": 172.989, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.010, "filter_rmsd": 0.070, "frame": { "rmsd": 0.011, "origin": [ 174.534, 192.074, 110.109 ], "x_axis": [ 0.619, -0.714, -0.326 ], "y_axis": [ -0.321, 0.149, -0.935 ], "z_axis": [ 0.717, 0.684, -0.137 ], "quaternion": [ 0.639, -0.634, 0.408, -0.154 ] } }, { "index": 2202, "index_chain": 2202, "chain_name": "A", "nt_resnum": 2398, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2398", "linked_nts": [ "///A/2397", "///A/2399" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,internal-loop", "alpha": 165.388, "beta": 168.148, "gamma": 137.047, "delta": 151.454, "epsilon": -168.261, "zeta": -87.508, "epsilon_zeta": -80.752, "bb_type": "BI", "chi": -131.870, "glyco_bond": "anti", "C5prime_xyz": [ -1.280, 8.582, -0.472 ], "P_xyz": [ 1.071, 8.966, -1.575 ], "form": ".", "ssZp": 1.867, "Dp": 1.978, "splay_angle": 17.923, "splay_distance": 3.213, "splay_ratio": 0.163, "d22": null, "d64": null, "eta": 103.201, "theta": -121.263, "eta_prime": 166.907, "theta_prime": -152.686, "eta_base": 178.238, "theta_base": -127.173, "v0": -18.127, "v1": 34.862, "v2": -37.314, "v3": 27.752, "v4": -6.231, "amplitude": 37.822, "phase_angle": 170.603, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.013, "origin": [ 177.371, 199.342, 106.945 ], "x_axis": [ 0.010, -0.991, 0.132 ], "y_axis": [ -0.777, -0.091, -0.623 ], "z_axis": [ 0.629, -0.096, -0.771 ], "quaternion": [ -0.192, 0.684, -0.646, 0.278 ] } }, { "index": 2203, "index_chain": 2203, "chain_name": "A", "nt_resnum": 2399, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2399", "linked_nts": [ "///A/2398", "///A/2400" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,BI,canonical,non-pair-contact,helix-end,stem-end", "alpha": -81.142, "beta": -168.339, "gamma": 34.493, "delta": 141.319, "epsilon": -158.361, "zeta": -73.685, "epsilon_zeta": -84.676, "bb_type": "BI", "chi": -108.815, "glyco_bond": "anti", "C5prime_xyz": [ -2.500, 8.356, -1.811 ], "P_xyz": [ -0.640, 10.192, -1.561 ], "form": ".", "ssZp": 2.293, "Dp": 2.203, "splay_angle": 48.656, "splay_distance": 7.469, "splay_ratio": 0.417, "d22": null, "d64": null, "eta": 148.080, "theta": -86.564, "eta_prime": 177.641, "theta_prime": -115.568, "eta_base": -146.231, "theta_base": -65.993, "v0": -26.668, "v1": 38.116, "v2": -34.286, "v3": 19.793, "v4": 4.069, "amplitude": 37.810, "phase_angle": 155.065, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 180.224, 199.089, 105.491 ], "x_axis": [ -0.448, -0.890, -0.087 ], "y_axis": [ -0.661, 0.395, -0.638 ], "z_axis": [ 0.602, -0.228, -0.765 ], "quaternion": [ 0.214, -0.480, 0.807, -0.268 ] } }, { "index": 2204, "index_chain": 2204, "chain_name": "A", "nt_resnum": 2400, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2400", "linked_nts": [ "///A/2399", "///A/2401" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-pair-contact,ss-non-loop", "alpha": 151.535, "beta": 138.089, "gamma": -171.002, "delta": 139.515, "epsilon": 9.990, "zeta": 76.195, "epsilon_zeta": -66.205, "bb_type": "--", "chi": 34.060, "glyco_bond": "syn", "C5prime_xyz": [ -5.625, 4.229, -0.200 ], "P_xyz": [ -7.613, 3.105, 1.078 ], "form": ".", "ssZp": 0.625, "Dp": 1.055, "splay_angle": 18.708, "splay_distance": 3.076, "splay_ratio": 0.169, "d22": null, "d64": null, "eta": -137.163, "theta": 133.863, "eta_prime": -136.210, "theta_prime": 119.206, "eta_base": -95.752, "theta_base": 86.641, "v0": -24.395, "v1": 35.455, "v2": -32.380, "v3": 19.202, "v4": 3.023, "amplitude": 35.352, "phase_angle": 156.336, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 177.812, 198.101, 98.491 ], "x_axis": [ 0.276, -0.955, -0.109 ], "y_axis": [ 0.893, 0.296, -0.338 ], "z_axis": [ 0.355, -0.004, 0.935 ], "quaternion": [ 0.792, -0.105, 0.146, -0.584 ] } }, { "index": 2205, "index_chain": 2205, "chain_name": "A", "nt_resnum": 2401, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2401", "linked_nts": [ "///A/2400", "///A/2402" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,non-pair-contact,ss-non-loop,cap-donor", "alpha": 95.512, "beta": 176.855, "gamma": 83.280, "delta": 84.370, "epsilon": 35.441, "zeta": 151.629, "epsilon_zeta": -116.188, "bb_type": "--", "chi": 167.067, "glyco_bond": "anti", "C5prime_xyz": [ -1.514, 8.068, 2.332 ], "P_xyz": [ 1.031, 8.135, 2.941 ], "form": ".", "ssZp": 2.708, "Dp": 2.770, "splay_angle": 30.146, "splay_distance": 5.426, "splay_ratio": 0.350, "d22": null, "d64": null, "eta": 112.312, "theta": -147.603, "eta_prime": 100.319, "theta_prime": -148.168, "eta_base": 93.160, "theta_base": 163.800, "v0": 2.960, "v1": -22.720, "v2": 32.765, "v3": -31.840, "v4": 18.274, "amplitude": 33.713, "phase_angle": 13.621, "puckering": "C3'-endo", "sugar_class": "pucker-CHK", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.020, "frame": { "rmsd": 0.020, "origin": [ 179.672, 198.751, 100.854 ], "x_axis": [ -0.610, 0.761, 0.221 ], "y_axis": [ 0.740, 0.647, -0.186 ], "z_axis": [ -0.284, 0.051, -0.957 ], "quaternion": [ -0.141, 0.419, 0.896, -0.038 ] } }, { "index": 2206, "index_chain": 2206, "chain_name": "A", "nt_resnum": 2402, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2402", "linked_nts": [ "///A/2401", "///A/2403" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-pair-contact,ss-non-loop,cap-acceptor,phosphate", "alpha": -162.268, "beta": 160.659, "gamma": 41.861, "delta": 87.229, "epsilon": 38.445, "zeta": 144.416, "epsilon_zeta": -105.972, "bb_type": "--", "chi": -57.843, "glyco_bond": "--", "C5prime_xyz": [ -2.527, 5.218, -3.551 ], "P_xyz": [ -0.570, 3.718, -4.491 ], "form": ".", "ssZp": -2.504, "Dp": 3.399, "splay_angle": 59.408, "splay_distance": 8.956, "splay_ratio": 0.505, "d22": null, "d64": null, "eta": 165.494, "theta": -151.577, "eta_prime": -177.900, "theta_prime": 175.359, "eta_base": 141.023, "theta_base": 170.200, "v0": 15.390, "v1": -31.654, "v2": 35.307, "v3": -27.327, "v4": 7.672, "amplitude": 35.523, "phase_angle": 353.675, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.044, "frame": { "rmsd": 0.015, "origin": [ 184.424, 196.601, 99.357 ], "x_axis": [ -0.865, 0.432, -0.254 ], "y_axis": [ 0.204, -0.160, -0.966 ], "z_axis": [ -0.458, -0.888, 0.050 ], "quaternion": [ 0.079, -0.247, -0.643, 0.720 ] } }, { "index": 2207, "index_chain": 2207, "chain_name": "A", "nt_resnum": 2403, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2403", "linked_nts": [ "///A/2402", "///A/2404" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,phosphate", "alpha": -70.147, "beta": -100.487, "gamma": -153.124, "delta": 78.952, "epsilon": -104.145, "zeta": -10.751, "epsilon_zeta": -93.394, "bb_type": "--", "chi": -62.029, "glyco_bond": "--", "C5prime_xyz": [ -3.305, 5.945, -3.431 ], "P_xyz": [ -5.234, 4.282, -4.068 ], "form": ".", "ssZp": -3.031, "Dp": 4.777, "splay_angle": 32.670, "splay_distance": 5.820, "splay_ratio": 0.286, "d22": null, "d64": null, "eta": 115.945, "theta": -74.100, "eta_prime": 119.535, "theta_prime": -86.124, "eta_base": 135.730, "theta_base": -69.682, "v0": 3.169, "v1": -26.186, "v2": 38.096, "v3": -37.269, "v4": 21.469, "amplitude": 39.274, "phase_angle": 14.069, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.009, "origin": [ 188.005, 189.419, 95.382 ], "x_axis": [ -0.758, -0.629, -0.173 ], "y_axis": [ 0.219, 0.005, -0.976 ], "z_axis": [ 0.614, -0.778, 0.134 ], "quaternion": [ -0.308, 0.161, -0.638, 0.687 ] } }, { "index": 2208, "index_chain": 2208, "chain_name": "A", "nt_resnum": 2404, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2404", "linked_nts": [ "///A/2403", "///A/2405" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate", "alpha": 147.311, "beta": 160.238, "gamma": 165.953, "delta": 82.484, "epsilon": -173.803, "zeta": -146.756, "epsilon_zeta": -27.047, "bb_type": "--", "chi": 147.883, "glyco_bond": "anti", "C5prime_xyz": [ -2.790, 7.872, 2.678 ], "P_xyz": [ -1.506, 10.097, 3.250 ], "form": ".", "ssZp": 2.339, "Dp": 4.010, "splay_angle": 78.564, "splay_distance": 10.123, "splay_ratio": 0.634, "d22": null, "d64": null, "eta": 127.918, "theta": 84.783, "eta_prime": 163.137, "theta_prime": 73.565, "eta_base": -143.585, "theta_base": 30.623, "v0": -8.767, "v1": -13.386, "v2": 28.826, "v3": -34.784, "v4": 27.509, "amplitude": 34.382, "phase_angle": 33.027, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 183.676, 193.305, 95.534 ], "x_axis": [ 0.778, -0.025, 0.628 ], "y_axis": [ 0.577, -0.367, -0.729 ], "z_axis": [ 0.249, 0.930, -0.271 ], "quaternion": [ 0.534, -0.777, -0.178, -0.282 ] } }, { "index": 2209, "index_chain": 2209, "chain_name": "A", "nt_resnum": 2405, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2405", "linked_nts": [ "///A/2404", "///A/2406" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-stack,non-pair-contact,ss-non-loop,cap-donor,phosphate", "alpha": -60.924, "beta": 136.922, "gamma": -3.922, "delta": 146.423, "epsilon": -81.233, "zeta": -70.428, "epsilon_zeta": -10.805, "bb_type": "--", "chi": 135.763, "glyco_bond": "--", "C5prime_xyz": [ -3.005, 6.688, 3.150 ], "P_xyz": [ -3.553, 4.675, 4.745 ], "form": ".", "ssZp": 0.437, "Dp": 0.643, "splay_angle": 31.862, "splay_distance": 5.419, "splay_ratio": 0.305, "d22": null, "d64": null, "eta": 125.843, "theta": -60.804, "eta_prime": 126.091, "theta_prime": -123.299, "eta_base": 119.596, "theta_base": -170.153, "v0": -18.707, "v1": 32.859, "v2": -33.674, "v3": 23.714, "v4": -3.325, "amplitude": 34.605, "phase_angle": 166.685, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.048, "frame": { "rmsd": 0.017, "origin": [ 187.908, 189.013, 87.401 ], "x_axis": [ 0.812, 0.228, -0.538 ], "y_axis": [ -0.583, 0.251, -0.773 ], "z_axis": [ -0.041, 0.941, 0.336 ], "quaternion": [ 0.774, -0.553, 0.160, 0.262 ] } }, { "index": 2210, "index_chain": 2210, "chain_name": "A", "nt_resnum": 2406, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2406", "linked_nts": [ "///A/2405", "///A/2407" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BI,non-stack,non-pair-contact,ss-non-loop,cap-acceptor", "alpha": -41.243, "beta": -81.036, "gamma": -168.889, "delta": 155.749, "epsilon": -148.977, "zeta": -27.062, "epsilon_zeta": -121.915, "bb_type": "BI", "chi": 121.569, "glyco_bond": "--", "C5prime_xyz": [ -3.323, 5.817, 3.208 ], "P_xyz": [ -0.881, 6.400, 4.073 ], "form": ".", "ssZp": -0.568, "Dp": 1.555, "splay_angle": 39.357, "splay_distance": 6.037, "splay_ratio": 0.358, "d22": null, "d64": null, "eta": 155.465, "theta": -144.821, "eta_prime": 137.673, "theta_prime": -85.908, "eta_base": 120.589, "theta_base": -49.484, "v0": -14.714, "v1": 32.732, "v2": -37.201, "v3": 29.676, "v4": -9.554, "amplitude": 37.297, "phase_angle": 175.896, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.044, "frame": { "rmsd": 0.016, "origin": [ 184.225, 185.412, 85.716 ], "x_axis": [ 0.307, -0.000, -0.952 ], "y_axis": [ -0.948, 0.086, -0.306 ], "z_axis": [ 0.082, 0.996, 0.026 ], "quaternion": [ 0.596, -0.547, 0.434, 0.398 ] } }, { "index": 2211, "index_chain": 2211, "chain_name": "A", "nt_resnum": 2407, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2407", "linked_nts": [ "///A/2406", "///A/2408" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-pair-contact,ss-non-loop", "alpha": 174.226, "beta": -174.560, "gamma": 140.284, "delta": 148.765, "epsilon": -135.960, "zeta": -144.656, "epsilon_zeta": 8.695, "bb_type": "--", "chi": -55.655, "glyco_bond": "--", "C5prime_xyz": [ -3.256, 6.176, -3.208 ], "P_xyz": [ -2.055, 4.841, -5.097 ], "form": ".", "ssZp": 0.308, "Dp": 1.646, "splay_angle": 22.797, "splay_distance": 4.180, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": 148.013, "theta": 178.439, "eta_prime": -144.308, "theta_prime": 153.871, "eta_base": -97.763, "theta_base": -145.109, "v0": -18.461, "v1": 34.007, "v2": -35.755, "v3": 25.934, "v4": -4.880, "amplitude": 36.441, "phase_angle": 168.868, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.035, "frame": { "rmsd": 0.008, "origin": [ 181.154, 189.952, 88.245 ], "x_axis": [ -0.398, 0.900, -0.175 ], "y_axis": [ -0.585, -0.102, 0.805 ], "z_axis": [ 0.707, 0.423, 0.567 ], "quaternion": [ 0.516, 0.185, 0.427, 0.719 ] } }, { "index": 2212, "index_chain": 2212, "chain_name": "A", "nt_resnum": 2408, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2408", "linked_nts": [ "///A/2407", "///A/2409" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -88.845, "beta": 123.620, "gamma": 68.749, "delta": 79.313, "epsilon": -142.102, "zeta": -53.343, "epsilon_zeta": -88.759, "bb_type": "BI", "chi": -114.260, "glyco_bond": "anti", "C5prime_xyz": [ -1.955, 8.277, -2.062 ], "P_xyz": [ -0.386, 7.252, -3.878 ], "form": ".", "ssZp": 1.970, "Dp": 4.659, "splay_angle": 57.488, "splay_distance": 9.872, "splay_ratio": 0.482, "d22": null, "d64": null, "eta": 149.414, "theta": -124.919, "eta_prime": 153.767, "theta_prime": -130.245, "eta_base": -144.099, "theta_base": -135.791, "v0": 0.151, "v1": -23.551, "v2": 36.689, "v3": -37.546, "v4": 23.590, "amplitude": 38.652, "phase_angle": 18.341, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 181.380, 190.924, 92.304 ], "x_axis": [ -0.686, 0.646, 0.335 ], "y_axis": [ -0.103, -0.541, 0.835 ], "z_axis": [ 0.721, 0.538, 0.438 ], "quaternion": [ 0.230, 0.323, 0.420, 0.816 ] } }, { "index": 2213, "index_chain": 2213, "chain_name": "A", "nt_resnum": 2409, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2409", "linked_nts": [ "///A/2408", "///A/2410" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -68.468, "beta": -118.785, "gamma": 16.349, "delta": 142.467, "epsilon": -130.611, "zeta": -85.325, "epsilon_zeta": -45.286, "bb_type": "BI", "chi": -138.326, "glyco_bond": "anti", "C5prime_xyz": [ -1.817, 8.732, -0.320 ], "P_xyz": [ -1.570, 10.352, 1.739 ], "form": ".", "ssZp": 1.746, "Dp": 1.738, "splay_angle": 39.284, "splay_distance": 6.312, "splay_ratio": 0.343, "d22": 10.468, "d64": 10.123, "eta": -172.482, "theta": -136.258, "eta_prime": -163.020, "theta_prime": -141.918, "eta_base": -163.475, "theta_base": -103.163, "v0": -22.763, "v1": 34.816, "v2": -33.032, "v3": 20.732, "v4": 1.072, "amplitude": 35.255, "phase_angle": 159.545, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.098, "frame": { "rmsd": 0.010, "origin": [ 182.987, 196.614, 100.210 ], "x_axis": [ -0.517, 0.120, -0.848 ], "y_axis": [ 0.031, -0.987, -0.159 ], "z_axis": [ -0.856, -0.108, 0.506 ], "quaternion": [ 0.026, -0.491, -0.077, 0.867 ] } }, { "index": 2214, "index_chain": 2214, "chain_name": "A", "nt_resnum": 2410, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2410", "linked_nts": [ "///A/2409", "///A/2411" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -144.239, "beta": 91.439, "gamma": -178.184, "delta": 141.521, "epsilon": -144.652, "zeta": 149.699, "epsilon_zeta": 65.649, "bb_type": "--", "chi": -33.643, "glyco_bond": "--", "C5prime_xyz": [ -4.258, 5.564, -2.890 ], "P_xyz": [ -6.549, 4.387, -3.349 ], "form": ".", "ssZp": -0.216, "Dp": 2.034, "splay_angle": 111.533, "splay_distance": 16.122, "splay_ratio": 0.828, "d22": null, "d64": null, "eta": -129.915, "theta": 18.365, "eta_prime": -143.183, "theta_prime": 17.830, "eta_base": -117.143, "theta_base": -26.041, "v0": -21.242, "v1": 32.866, "v2": -31.402, "v3": 19.951, "v4": 0.667, "amplitude": 33.379, "phase_angle": 160.185, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.071, "frame": { "rmsd": 0.011, "origin": [ 179.351, 194.744, 105.018 ], "x_axis": [ -0.781, 0.338, 0.525 ], "y_axis": [ 0.423, -0.331, 0.843 ], "z_axis": [ 0.459, 0.881, 0.116 ], "quaternion": [ -0.029, 0.330, 0.577, 0.746 ] } }, { "index": 2215, "index_chain": 2215, "chain_name": "A", "nt_resnum": 2411, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2411", "linked_nts": [ "///A/2410", "///A/2412" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-stack,non-pair-contact,ss-non-loop,cap-donor,phosphate,splayed-apart", "alpha": -76.332, "beta": -119.449, "gamma": -114.575, "delta": 158.462, "epsilon": -170.977, "zeta": -151.143, "epsilon_zeta": -19.834, "bb_type": "--", "chi": -64.889, "glyco_bond": "--", "C5prime_xyz": [ -3.144, 6.608, -3.008 ], "P_xyz": [ -4.023, 5.940, -5.396 ], "form": ".", "ssZp": 1.581, "Dp": 1.859, "splay_angle": 137.464, "splay_distance": 14.645, "splay_ratio": 0.935, "d22": null, "d64": null, "eta": 131.602, "theta": 163.693, "eta_prime": 124.400, "theta_prime": 177.256, "eta_base": 139.663, "theta_base": -171.889, "v0": -18.398, "v1": 37.812, "v2": -41.476, "v3": 31.957, "v4": -8.734, "amplitude": 41.781, "phase_angle": 173.068, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 187.413, 181.281, 108.716 ], "x_axis": [ -0.200, -0.243, -0.949 ], "y_axis": [ 0.495, 0.811, -0.312 ], "z_axis": [ 0.846, -0.532, -0.042 ], "quaternion": [ 0.626, 0.088, 0.716, -0.295 ] } }, { "index": 2216, "index_chain": 2216, "chain_name": "A", "nt_resnum": 2412, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2412", "linked_nts": [ "///A/2411", "///A/2413" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-stack,non-canonical,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": 35.771, "beta": 66.178, "gamma": 147.831, "delta": 153.345, "epsilon": -171.713, "zeta": 65.658, "epsilon_zeta": 122.629, "bb_type": "--", "chi": -3.677, "glyco_bond": "syn", "C5prime_xyz": [ -4.875, 4.392, -2.095 ], "P_xyz": [ -5.592, 2.257, -0.728 ], "form": ".", "ssZp": -0.167, "Dp": 1.919, "splay_angle": 102.871, "splay_distance": 12.393, "splay_ratio": 0.805, "d22": null, "d64": null, "eta": 46.843, "theta": -101.137, "eta_prime": -15.067, "theta_prime": -166.081, "eta_base": -1.397, "theta_base": 141.665, "v0": -17.866, "v1": 35.619, "v2": -38.690, "v3": 29.385, "v4": -7.538, "amplitude": 39.062, "phase_angle": 172.082, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.019, "frame": { "rmsd": 0.019, "origin": [ 199.743, 188.823, 111.075 ], "x_axis": [ 0.959, -0.282, 0.037 ], "y_axis": [ -0.264, -0.931, -0.250 ], "z_axis": [ 0.105, 0.230, -0.967 ], "quaternion": [ -0.122, 0.982, -0.139, 0.036 ] } }, { "index": 2217, "index_chain": 2217, "chain_name": "A", "nt_resnum": 2413, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2413", "linked_nts": [ "///A/2412", "///A/2414" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": -144.996, "beta": -118.912, "gamma": 171.721, "delta": 148.772, "epsilon": -159.912, "zeta": 30.512, "epsilon_zeta": 169.575, "bb_type": "--", "chi": 52.471, "glyco_bond": "syn", "C5prime_xyz": [ -5.392, 3.872, 0.830 ], "P_xyz": [ -4.479, 1.861, 2.244 ], "form": ".", "ssZp": -1.815, "Dp": 1.938, "splay_angle": 112.083, "splay_distance": 17.471, "splay_ratio": 0.830, "d22": null, "d64": null, "eta": -108.763, "theta": 48.757, "eta_prime": 91.470, "theta_prime": -44.051, "eta_base": 153.928, "theta_base": -73.664, "v0": -20.992, "v1": 36.127, "v2": -36.644, "v3": 25.479, "v4": -3.057, "amplitude": 37.803, "phase_angle": 165.778, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 195.500, 179.181, 104.548 ], "x_axis": [ -0.081, -0.236, -0.968 ], "y_axis": [ -0.903, -0.393, 0.172 ], "z_axis": [ -0.421, 0.889, -0.181 ], "quaternion": [ -0.293, 0.611, -0.466, -0.568 ] } }, { "index": 2218, "index_chain": 2218, "chain_name": "A", "nt_resnum": 2414, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2414", "linked_nts": [ "///A/2413", "///A/2415" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,multiplet,ss-non-loop,phosphate,splayed-apart", "alpha": -164.060, "beta": -90.693, "gamma": -39.321, "delta": 80.083, "epsilon": -164.049, "zeta": -80.558, "epsilon_zeta": -83.491, "bb_type": "BI", "chi": -146.161, "glyco_bond": "anti", "C5prime_xyz": [ -1.515, 8.785, -0.371 ], "P_xyz": [ -2.064, 11.001, 0.907 ], "form": ".", "ssZp": 4.055, "Dp": 4.554, "splay_angle": 23.667, "splay_distance": 4.667, "splay_ratio": 0.231, "d22": 4.836, "d64": 6.140, "eta": 54.820, "theta": 164.966, "eta_prime": 86.935, "theta_prime": 162.702, "eta_base": 106.140, "theta_base": 143.629, "v0": 0.593, "v1": -23.454, "v2": 36.155, "v3": -36.703, "v4": 22.750, "amplitude": 37.941, "phase_angle": 17.651, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.008, "origin": [ 194.378, 173.868, 121.154 ], "x_axis": [ 0.901, 0.392, -0.184 ], "y_axis": [ -0.262, 0.155, -0.953 ], "z_axis": [ -0.345, 0.907, 0.242 ], "quaternion": [ 0.758, -0.613, -0.053, 0.216 ] } }, { "index": 2219, "index_chain": 2219, "chain_name": "A", "nt_resnum": 2415, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2415", "linked_nts": [ "///A/2414", "///A/2416" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop", "alpha": 109.036, "beta": -168.968, "gamma": -146.942, "delta": 73.593, "epsilon": -117.837, "zeta": -45.944, "epsilon_zeta": -71.894, "bb_type": "--", "chi": -159.585, "glyco_bond": "anti", "C5prime_xyz": [ -1.456, 8.775, 0.467 ], "P_xyz": [ -1.184, 11.109, -0.713 ], "form": ".", "ssZp": 4.219, "Dp": 4.811, "splay_angle": 39.306, "splay_distance": 7.344, "splay_ratio": 0.358, "d22": 4.552, "d64": 5.940, "eta": 148.974, "theta": -113.906, "eta_prime": 147.374, "theta_prime": -115.308, "eta_base": 127.476, "theta_base": -79.577, "v0": 2.620, "v1": -27.559, "v2": 40.938, "v3": -40.454, "v4": 23.680, "amplitude": 42.399, "phase_angle": 15.083, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.009, "origin": [ 192.168, 174.223, 125.249 ], "x_axis": [ 0.984, 0.025, -0.179 ], "y_axis": [ -0.174, 0.394, -0.903 ], "z_axis": [ 0.048, 0.919, 0.391 ], "quaternion": [ 0.832, -0.547, 0.068, 0.060 ] } }, { "index": 2220, "index_chain": 2220, "chain_name": "A", "nt_resnum": 2416, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2416", "linked_nts": [ "///A/2415", "///A/2417" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-stack,non-canonical,non-pair-contact,multiplet,ss-non-loop", "alpha": 103.406, "beta": 175.307, "gamma": -114.067, "delta": 78.993, "epsilon": -90.065, "zeta": -161.535, "epsilon_zeta": 71.471, "bb_type": "BII", "chi": -139.093, "glyco_bond": "anti", "C5prime_xyz": [ -1.910, 8.791, -0.766 ], "P_xyz": [ -2.195, 11.264, -1.644 ], "form": ".", "ssZp": 2.675, "Dp": 4.511, "splay_angle": 48.077, "splay_distance": 7.773, "splay_ratio": 0.511, "d22": null, "d64": null, "eta": 159.250, "theta": 121.117, "eta_prime": -176.635, "theta_prime": 158.753, "eta_base": -124.157, "theta_base": -131.887, "v0": -3.316, "v1": -19.982, "v2": 34.270, "v3": -37.158, "v4": 25.549, "amplitude": 37.392, "phase_angle": 23.583, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 198.998, 175.113, 122.701 ], "x_axis": [ 0.400, -0.094, -0.912 ], "y_axis": [ -0.689, 0.625, -0.367 ], "z_axis": [ 0.604, 0.775, 0.185 ], "quaternion": [ 0.743, -0.384, 0.510, 0.200 ] } }, { "index": 2221, "index_chain": 2221, "chain_name": "A", "nt_resnum": 2417, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2417", "linked_nts": [ "///A/2416", "///A/2418" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-pair-contact,ss-non-loop,cap-donor,cap-acceptor,phosphate", "alpha": -53.661, "beta": 138.525, "gamma": 68.191, "delta": 89.458, "epsilon": 172.801, "zeta": -85.821, "epsilon_zeta": -101.377, "bb_type": "BI", "chi": -48.128, "glyco_bond": "syn", "C5prime_xyz": [ -3.210, 4.936, -3.385 ], "P_xyz": [ -2.240, 2.519, -3.736 ], "form": ".", "ssZp": -2.182, "Dp": 4.355, "splay_angle": 40.620, "splay_distance": 6.417, "splay_ratio": 0.350, "d22": null, "d64": null, "eta": -164.918, "theta": -132.107, "eta_prime": -155.888, "theta_prime": -144.837, "eta_base": -133.356, "theta_base": -171.375, "v0": 12.314, "v1": -30.064, "v2": 35.403, "v3": -29.325, "v4": 10.821, "amplitude": 35.410, "phase_angle": 358.826, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.010, "filter_rmsd": 0.042, "frame": { "rmsd": 0.006, "origin": [ 197.814, 182.426, 120.349 ], "x_axis": [ 0.322, 0.510, -0.798 ], "y_axis": [ -0.217, 0.860, 0.462 ], "z_axis": [ 0.922, 0.024, 0.388 ], "quaternion": [ 0.802, 0.137, 0.536, 0.227 ] } }, { "index": 2222, "index_chain": 2222, "chain_name": "A", "nt_resnum": 2418, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2418", "linked_nts": [ "///A/2417", "///A/2419" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -178.439, "beta": -133.130, "gamma": 157.086, "delta": 151.036, "epsilon": -96.630, "zeta": 27.061, "epsilon_zeta": 236.309, "bb_type": "--", "chi": -116.899, "glyco_bond": "anti", "C5prime_xyz": [ -2.220, 8.483, -1.289 ], "P_xyz": [ 0.110, 8.376, -2.496 ], "form": ".", "ssZp": 0.697, "Dp": 0.726, "splay_angle": 122.030, "splay_distance": 18.247, "splay_ratio": 0.875, "d22": null, "d64": null, "eta": -141.994, "theta": 67.194, "eta_prime": -127.078, "theta_prime": 55.645, "eta_base": -149.900, "theta_base": 76.255, "v0": -21.988, "v1": 37.679, "v2": -37.963, "v3": 26.350, "v4": -2.948, "amplitude": 39.224, "phase_angle": 165.430, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.129, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 201.126, 187.829, 121.353 ], "x_axis": [ -0.459, -0.234, -0.857 ], "y_axis": [ -0.826, 0.467, 0.315 ], "z_axis": [ 0.327, 0.853, -0.408 ], "quaternion": [ 0.387, -0.347, 0.764, 0.382 ] } }, { "index": 2223, "index_chain": 2223, "chain_name": "A", "nt_resnum": 2419, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2419", "linked_nts": [ "///A/2418", "///A/2420" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 138.843, "beta": -91.124, "gamma": -114.709, "delta": 84.327, "epsilon": -99.637, "zeta": -51.957, "epsilon_zeta": -47.681, "bb_type": "--", "chi": -152.359, "glyco_bond": "anti", "C5prime_xyz": [ -1.437, 8.772, 0.060 ], "P_xyz": [ -2.443, 10.493, -1.638 ], "form": ".", "ssZp": 3.647, "Dp": 4.598, "splay_angle": 22.173, "splay_distance": 3.715, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": -53.536, "theta": -122.309, "eta_prime": -72.946, "theta_prime": -136.875, "eta_base": -89.208, "theta_base": 177.297, "v0": 0.306, "v1": -21.177, "v2": 32.673, "v3": -33.439, "v4": 20.979, "amplitude": 34.380, "phase_angle": 18.135, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 194.899, 189.241, 138.446 ], "x_axis": [ -0.169, 0.810, 0.562 ], "y_axis": [ 0.087, 0.580, -0.810 ], "z_axis": [ -0.982, -0.088, -0.169 ], "quaternion": [ 0.557, -0.324, -0.692, 0.324 ] } }, { "index": 2224, "index_chain": 2224, "chain_name": "A", "nt_resnum": 2420, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2420", "linked_nts": [ "///A/2419", "///A/2421" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,ss-non-loop", "alpha": -163.953, "beta": -166.837, "gamma": 51.312, "delta": 82.983, "epsilon": -116.354, "zeta": 167.113, "epsilon_zeta": 76.533, "bb_type": "BII", "chi": -119.280, "glyco_bond": "anti", "C5prime_xyz": [ -1.408, 8.342, -1.779 ], "P_xyz": [ 1.114, 8.723, -2.359 ], "form": ".", "ssZp": 1.911, "Dp": 4.746, "splay_angle": 68.486, "splay_distance": 9.899, "splay_ratio": 0.582, "d22": null, "d64": null, "eta": 62.541, "theta": 94.174, "eta_prime": 100.715, "theta_prime": 61.595, "eta_base": 79.396, "theta_base": 88.749, "v0": 4.498, "v1": -25.163, "v2": 35.041, "v3": -33.469, "v4": 18.322, "amplitude": 35.771, "phase_angle": 11.596, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.039, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 191.364, 188.457, 137.618 ], "x_axis": [ 0.938, -0.318, -0.138 ], "y_axis": [ 0.101, 0.633, -0.767 ], "z_axis": [ 0.331, 0.706, 0.626 ], "quaternion": [ 0.894, -0.412, 0.131, -0.117 ] } }, { "index": 2225, "index_chain": 2225, "chain_name": "A", "nt_resnum": 2421, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2421", "linked_nts": [ "///A/2420", "///A/2422" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,phosphate", "alpha": -24.628, "beta": -90.225, "gamma": -170.600, "delta": 81.878, "epsilon": -113.537, "zeta": 50.393, "epsilon_zeta": 196.070, "bb_type": "--", "chi": 44.216, "glyco_bond": "syn", "C5prime_xyz": [ -5.306, 3.390, 0.877 ], "P_xyz": [ -4.952, 3.521, 3.473 ], "form": ".", "ssZp": -3.003, "Dp": 4.708, "splay_angle": 54.207, "splay_distance": 8.971, "splay_ratio": 0.487, "d22": null, "d64": null, "eta": 108.257, "theta": -37.200, "eta_prime": 117.315, "theta_prime": -51.829, "eta_base": 173.207, "theta_base": -59.369, "v0": 1.850, "v1": -23.414, "v2": 34.858, "v3": -34.754, "v4": 20.745, "amplitude": 36.216, "phase_angle": 15.739, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 185.420, 193.954, 131.922 ], "x_axis": [ -0.444, -0.883, -0.153 ], "y_axis": [ 0.518, -0.114, -0.848 ], "z_axis": [ 0.731, -0.456, 0.508 ], "quaternion": [ -0.487, 0.201, -0.454, 0.719 ] } }, { "index": 2226, "index_chain": 2226, "chain_name": "A", "nt_resnum": 2422, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2422", "linked_nts": [ "///A/2421", "///A/2423" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,ss-non-loop", "alpha": -175.039, "beta": 114.935, "gamma": 170.283, "delta": 80.013, "epsilon": -161.168, "zeta": 51.983, "epsilon_zeta": 146.849, "bb_type": "--", "chi": -168.600, "glyco_bond": "anti", "C5prime_xyz": [ -1.390, 8.629, 1.037 ], "P_xyz": [ -1.532, 10.876, -0.311 ], "form": ".", "ssZp": 4.546, "Dp": 4.566, "splay_angle": 19.045, "splay_distance": 2.812, "splay_ratio": 0.172, "d22": 8.696, "d64": 8.521, "eta": 172.443, "theta": -111.220, "eta_prime": -158.598, "theta_prime": -148.068, "eta_base": -94.740, "theta_base": 145.397, "v0": 2.548, "v1": -24.975, "v2": 36.719, "v3": -36.275, "v4": 21.248, "amplitude": 37.991, "phase_angle": 14.867, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.005, "origin": [ 189.003, 197.994, 139.085 ], "x_axis": [ 0.857, 0.498, 0.131 ], "y_axis": [ -0.021, 0.290, -0.957 ], "z_axis": [ -0.514, 0.818, 0.259 ], "quaternion": [ 0.776, -0.572, -0.208, 0.167 ] } }, { "index": 2227, "index_chain": 2227, "chain_name": "A", "nt_resnum": 2423, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2423", "linked_nts": [ "///A/2422", "///A/2424" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,non-stack,non-pair-contact,ss-non-loop", "alpha": -98.045, "beta": -91.805, "gamma": -158.207, "delta": 81.005, "epsilon": 175.642, "zeta": 148.549, "epsilon_zeta": 27.093, "bb_type": "--", "chi": 39.851, "glyco_bond": "syn", "C5prime_xyz": [ -5.575, 3.933, 0.620 ], "P_xyz": [ -5.772, 4.142, 3.232 ], "form": ".", "ssZp": -3.841, "Dp": 4.221, "splay_angle": 67.467, "splay_distance": 10.714, "splay_ratio": 0.565, "d22": 10.880, "d64": 12.559, "eta": 40.994, "theta": 5.326, "eta_prime": 82.296, "theta_prime": -15.266, "eta_base": 66.392, "theta_base": -58.472, "v0": -1.318, "v1": -21.231, "v2": 34.377, "v3": -36.124, "v4": 23.588, "amplitude": 36.728, "phase_angle": 20.615, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.071, "frame": { "rmsd": 0.011, "origin": [ 186.281, 197.893, 139.786 ], "x_axis": [ -0.375, -0.379, 0.846 ], "y_axis": [ -0.584, 0.805, 0.102 ], "z_axis": [ -0.720, -0.456, -0.523 ], "quaternion": [ -0.476, -0.293, 0.822, -0.107 ] } }, { "index": 2228, "index_chain": 2228, "chain_name": "A", "nt_resnum": 2424, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2424", "linked_nts": [ "///A/2423", "///A/2425" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,phosphate", "alpha": -62.141, "beta": 116.676, "gamma": -68.379, "delta": 144.721, "epsilon": -149.679, "zeta": 101.066, "epsilon_zeta": 109.255, "bb_type": "--", "chi": -166.470, "glyco_bond": "anti", "C5prime_xyz": [ -1.844, 8.563, 1.263 ], "P_xyz": [ -2.640, 9.760, 3.460 ], "form": ".", "ssZp": 1.403, "Dp": 1.938, "splay_angle": 50.224, "splay_distance": 7.218, "splay_ratio": 0.453, "d22": null, "d64": null, "eta": 48.703, "theta": 65.216, "eta_prime": 73.604, "theta_prime": 82.145, "eta_base": 130.995, "theta_base": 98.353, "v0": -21.828, "v1": 35.275, "v2": -34.571, "v3": 22.856, "v4": -0.793, "amplitude": 36.240, "phase_angle": 162.546, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.004, "origin": [ 191.103, 199.388, 130.336 ], "x_axis": [ 0.677, -0.590, 0.440 ], "y_axis": [ 0.099, 0.665, 0.740 ], "z_axis": [ -0.730, -0.457, 0.509 ], "quaternion": [ 0.844, 0.354, -0.346, -0.204 ] } }, { "index": 2229, "index_chain": 2229, "chain_name": "A", "nt_resnum": 2425, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2425", "linked_nts": [ "///A/2424", "///A/2426" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop,cap-donor,phosphate", "alpha": -53.694, "beta": 116.181, "gamma": 63.425, "delta": 146.961, "epsilon": -158.367, "zeta": -89.568, "epsilon_zeta": -68.799, "bb_type": "BI", "chi": -56.367, "glyco_bond": "--", "C5prime_xyz": [ -3.374, 6.308, -3.163 ], "P_xyz": [ -1.182, 5.093, -3.982 ], "form": ".", "ssZp": 0.839, "Dp": 2.026, "splay_angle": 22.992, "splay_distance": 4.769, "splay_ratio": 0.282, "d22": null, "d64": null, "eta": 156.021, "theta": -93.255, "eta_prime": -147.498, "theta_prime": 178.457, "eta_base": -160.145, "theta_base": 120.357, "v0": -19.174, "v1": 33.429, "v2": -34.182, "v3": 23.977, "v4": -3.215, "amplitude": 35.165, "phase_angle": 166.421, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "0b", "suiteness": 0.010, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 192.494, 206.460, 130.725 ], "x_axis": [ -0.207, -0.023, -0.978 ], "y_axis": [ -0.726, 0.673, 0.138 ], "z_axis": [ 0.655, 0.739, -0.156 ], "quaternion": [ 0.572, -0.263, 0.714, 0.307 ] } }, { "index": 2230, "index_chain": 2230, "chain_name": "A", "nt_resnum": 2426, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2426", "linked_nts": [ "///A/2425", "///A/2427" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,cap-acceptor", "alpha": -168.298, "beta": 114.395, "gamma": 82.889, "delta": 147.409, "epsilon": -115.113, "zeta": -75.865, "epsilon_zeta": -39.247, "bb_type": "--", "chi": 136.780, "glyco_bond": "--", "C5prime_xyz": [ -2.758, 6.656, 3.188 ], "P_xyz": [ -0.443, 5.559, 3.783 ], "form": ".", "ssZp": 0.596, "Dp": 1.398, "splay_angle": 39.357, "splay_distance": 6.575, "splay_ratio": 0.337, "d22": null, "d64": null, "eta": 66.646, "theta": -55.069, "eta_prime": 113.897, "theta_prime": -103.211, "eta_base": 87.199, "theta_base": -124.638, "v0": -15.725, "v1": 30.450, "v2": -32.727, "v3": 24.453, "v4": -5.651, "amplitude": 33.141, "phase_angle": 170.934, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 192.265, 208.888, 134.824 ], "x_axis": [ -0.168, -0.553, 0.816 ], "y_axis": [ -0.242, 0.826, 0.510 ], "z_axis": [ -0.956, -0.111, -0.272 ], "quaternion": [ 0.588, 0.264, -0.753, -0.132 ] } }, { "index": 2231, "index_chain": 2231, "chain_name": "A", "nt_resnum": 2427, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2427", "linked_nts": [ "///A/2426", "///A/2428" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,cap-donor", "alpha": -98.821, "beta": -158.429, "gamma": 40.877, "delta": 143.567, "epsilon": -137.141, "zeta": -123.974, "epsilon_zeta": -13.166, "bb_type": "--", "chi": -110.758, "glyco_bond": "anti", "C5prime_xyz": [ -1.552, 8.189, -1.741 ], "P_xyz": [ 0.481, 9.532, -0.774 ], "form": ".", "ssZp": 1.043, "Dp": 1.671, "splay_angle": 18.253, "splay_distance": 3.495, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": 134.432, "theta": -102.546, "eta_prime": -178.249, "theta_prime": -119.277, "eta_base": -173.689, "theta_base": -87.610, "v0": -14.058, "v1": 27.307, "v2": -29.625, "v3": 22.253, "v4": -5.344, "amplitude": 29.961, "phase_angle": 171.412, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.233, "filter_rmsd": 0.105, "frame": { "rmsd": 0.011, "origin": [ 192.757, 210.401, 128.445 ], "x_axis": [ -0.410, -0.473, 0.780 ], "y_axis": [ -0.235, 0.881, 0.411 ], "z_axis": [ -0.881, -0.015, -0.472 ], "quaternion": [ -0.500, -0.213, 0.831, 0.119 ] } }, { "index": 2232, "index_chain": 2232, "chain_name": "A", "nt_resnum": 2428, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2428", "linked_nts": [ "///A/2427", "///A/2429" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,cap-acceptor,phosphate", "alpha": 138.874, "beta": -149.046, "gamma": 162.308, "delta": 140.062, "epsilon": -100.455, "zeta": -99.448, "epsilon_zeta": -1.007, "bb_type": "--", "chi": -86.415, "glyco_bond": "--", "C5prime_xyz": [ -2.495, 7.646, -2.679 ], "P_xyz": [ -1.136, 6.736, -4.715 ], "form": ".", "ssZp": 0.492, "Dp": 1.349, "splay_angle": 37.712, "splay_distance": 6.593, "splay_ratio": 0.374, "d22": null, "d64": null, "eta": 170.609, "theta": -128.080, "eta_prime": -165.787, "theta_prime": -152.964, "eta_base": -134.229, "theta_base": -126.216, "v0": -21.130, "v1": 32.014, "v2": -30.072, "v3": 18.652, "v4": 1.402, "amplitude": 32.255, "phase_angle": 158.803, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 190.044, 212.487, 127.736 ], "x_axis": [ -0.367, 0.011, 0.930 ], "y_axis": [ -0.362, 0.919, -0.154 ], "z_axis": [ -0.857, -0.393, -0.334 ], "quaternion": [ 0.552, 0.109, -0.809, 0.169 ] } }, { "index": 2233, "index_chain": 2233, "chain_name": "A", "nt_resnum": 2429, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2429", "linked_nts": [ "///A/2428", "///A/2430" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,cap-acceptor", "alpha": -153.857, "beta": 137.546, "gamma": 99.244, "delta": 86.471, "epsilon": -108.995, "zeta": -93.230, "epsilon_zeta": -15.765, "bb_type": "--", "chi": -76.847, "glyco_bond": "--", "C5prime_xyz": [ -2.576, 6.567, -3.340 ], "P_xyz": [ -2.333, 4.495, -4.925 ], "form": ".", "ssZp": -1.724, "Dp": 4.747, "splay_angle": 21.042, "splay_distance": 3.662, "splay_ratio": 0.183, "d22": null, "d64": null, "eta": 115.848, "theta": -122.323, "eta_prime": 149.971, "theta_prime": -135.076, "eta_base": 178.170, "theta_base": -178.779, "v0": 5.774, "v1": -25.520, "v2": 34.472, "v3": -32.048, "v4": 16.614, "amplitude": 34.931, "phase_angle": 9.297, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 184.909, 215.707, 125.141 ], "x_axis": [ -0.336, 0.395, 0.855 ], "y_axis": [ -0.389, 0.769, -0.508 ], "z_axis": [ -0.858, -0.503, -0.104 ], "quaternion": [ 0.576, -0.002, -0.743, 0.340 ] } }, { "index": 2234, "index_chain": 2234, "chain_name": "A", "nt_resnum": 2430, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2430", "linked_nts": [ "///A/2429", "///A/2431" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart", "alpha": 69.542, "beta": -115.082, "gamma": -110.108, "delta": 141.608, "epsilon": -95.526, "zeta": -105.002, "epsilon_zeta": 9.475, "bb_type": "--", "chi": -91.829, "glyco_bond": "anti", "C5prime_xyz": [ -2.539, 7.724, -2.496 ], "P_xyz": [ -3.465, 7.927, -4.948 ], "form": ".", "ssZp": 0.553, "Dp": 1.063, "splay_angle": 92.685, "splay_distance": 13.986, "splay_ratio": 0.725, "d22": 10.126, "d64": 11.870, "eta": -135.655, "theta": -122.445, "eta_prime": -134.740, "theta_prime": -178.579, "eta_base": -172.538, "theta_base": 151.405, "v0": -22.717, "v1": 34.508, "v2": -32.511, "v3": 20.258, "v4": 1.355, "amplitude": 34.814, "phase_angle": 159.044, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.007, "origin": [ 181.250, 215.833, 125.185 ], "x_axis": [ 0.291, 0.202, 0.935 ], "y_axis": [ -0.234, 0.963, -0.136 ], "z_axis": [ -0.928, -0.180, 0.327 ], "quaternion": [ 0.803, 0.014, -0.580, 0.136 ] } }, { "index": 2235, "index_chain": 2235, "chain_name": "A", "nt_resnum": 2431, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2431", "linked_nts": [ "///A/2430", "///A/2432" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-stack,ss-non-loop,splayed-apart", "alpha": 146.762, "beta": 155.184, "gamma": 40.918, "delta": 82.262, "epsilon": -144.638, "zeta": -96.448, "epsilon_zeta": -48.190, "bb_type": "BI", "chi": -166.946, "glyco_bond": "anti", "C5prime_xyz": [ -1.346, 8.613, 0.940 ], "P_xyz": [ 1.249, 8.760, 1.293 ], "form": ".", "ssZp": 4.558, "Dp": 4.650, "splay_angle": 124.292, "splay_distance": 14.888, "splay_ratio": 0.884, "d22": 8.457, "d64": 10.973, "eta": -31.013, "theta": -112.120, "eta_prime": 46.240, "theta_prime": -112.601, "eta_base": 86.477, "theta_base": -97.304, "v0": 2.767, "v1": -24.232, "v2": 35.259, "v3": -34.669, "v4": 20.096, "amplitude": 36.395, "phase_angle": 14.352, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2g", "suiteness": 0.127, "filter_rmsd": 0.102, "frame": { "rmsd": 0.004, "origin": [ 170.196, 217.746, 116.831 ], "x_axis": [ 0.738, -0.639, -0.217 ], "y_axis": [ 0.671, 0.729, 0.138 ], "z_axis": [ 0.070, -0.247, 0.966 ], "quaternion": [ 0.927, 0.104, 0.077, -0.353 ] } }, { "index": 2236, "index_chain": 2236, "chain_name": "A", "nt_resnum": 2432, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2432", "linked_nts": [ "///A/2431", "///A/2433" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,splayed-apart", "alpha": 101.012, "beta": 114.965, "gamma": 24.114, "delta": 78.989, "epsilon": -156.344, "zeta": -77.729, "epsilon_zeta": -78.615, "bb_type": "BI", "chi": -162.586, "glyco_bond": "anti", "C5prime_xyz": [ -1.034, 8.677, 0.607 ], "P_xyz": [ 1.461, 7.912, 0.779 ], "form": "A", "ssZp": 4.494, "Dp": 4.644, "splay_angle": 23.604, "splay_distance": 3.945, "splay_ratio": 0.214, "d22": 4.110, "d64": 4.490, "eta": -118.600, "theta": -114.494, "eta_prime": -103.112, "theta_prime": -126.554, "eta_base": -98.607, "theta_base": -114.167, "v0": 4.727, "v1": -27.575, "v2": 38.825, "v3": -37.095, "v4": 20.404, "amplitude": 39.679, "phase_angle": 11.908, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.070, "frame": { "rmsd": 0.018, "origin": [ 176.201, 221.513, 129.924 ], "x_axis": [ 0.693, 0.631, -0.350 ], "y_axis": [ -0.494, 0.061, -0.867 ], "z_axis": [ -0.525, 0.774, 0.354 ], "quaternion": [ 0.726, -0.565, -0.060, 0.387 ] } }, { "index": 2237, "index_chain": 2237, "chain_name": "A", "nt_resnum": 2433, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2433", "linked_nts": [ "///A/2432", "///A/2434" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,kissing-loop,phosphate", "alpha": 171.904, "beta": -162.050, "gamma": 161.636, "delta": 83.848, "epsilon": -132.591, "zeta": -56.674, "epsilon_zeta": -75.917, "bb_type": "BI", "chi": 178.727, "glyco_bond": "anti", "C5prime_xyz": [ -1.253, 8.357, 1.760 ], "P_xyz": [ 0.818, 9.726, 0.950 ], "form": ".", "ssZp": 4.659, "Dp": 4.683, "splay_angle": 28.706, "splay_distance": 4.534, "splay_ratio": 0.250, "d22": null, "d64": null, "eta": 163.257, "theta": -134.082, "eta_prime": 178.687, "theta_prime": -125.294, "eta_base": -142.450, "theta_base": -74.673, "v0": 3.640, "v1": -24.491, "v2": 34.784, "v3": -33.661, "v4": 18.974, "amplitude": 35.683, "phase_angle": 12.893, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.394, "filter_rmsd": 0.066, "frame": { "rmsd": 0.007, "origin": [ 176.633, 224.767, 132.112 ], "x_axis": [ 0.474, 0.289, -0.832 ], "y_axis": [ -0.818, -0.204, -0.537 ], "z_axis": [ -0.325, 0.935, 0.140 ], "quaternion": [ 0.594, -0.620, 0.213, 0.467 ] } }, { "index": 2238, "index_chain": 2238, "chain_name": "A", "nt_resnum": 2434, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2434", "linked_nts": [ "///A/2433", "///A/2435" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop,splayed-apart", "alpha": -64.301, "beta": 174.471, "gamma": 60.360, "delta": 140.564, "epsilon": -168.648, "zeta": 121.005, "epsilon_zeta": 70.347, "bb_type": "--", "chi": -143.534, "glyco_bond": "anti", "C5prime_xyz": [ -2.014, 8.748, -0.045 ], "P_xyz": [ 0.421, 9.345, 0.736 ], "form": ".", "ssZp": 2.663, "Dp": 2.503, "splay_angle": 129.213, "splay_distance": 16.599, "splay_ratio": 0.903, "d22": null, "d64": null, "eta": 156.187, "theta": 69.430, "eta_prime": -153.431, "theta_prime": 37.912, "eta_base": -81.023, "theta_base": 61.730, "v0": -22.911, "v1": 34.031, "v2": -31.440, "v3": 18.948, "v4": 2.323, "amplitude": 34.060, "phase_angle": 157.381, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.769, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 176.883, 228.292, 129.270 ], "x_axis": [ -0.341, -0.171, -0.925 ], "y_axis": [ -0.898, -0.231, 0.374 ], "z_axis": [ -0.278, 0.958, -0.075 ], "quaternion": [ 0.297, -0.491, 0.544, 0.612 ] } }, { "index": 2239, "index_chain": 2239, "chain_name": "A", "nt_resnum": 2435, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2435", "linked_nts": [ "///A/2434", "///A/2436" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,kissing-loop,phosphate,splayed-apart", "alpha": -159.013, "beta": 121.173, "gamma": 111.106, "delta": 82.868, "epsilon": 21.937, "zeta": 52.245, "epsilon_zeta": -30.308, "bb_type": "--", "chi": -170.256, "glyco_bond": "anti", "C5prime_xyz": [ -1.022, 8.452, 1.138 ], "P_xyz": [ 0.482, 9.271, -0.837 ], "form": ".", "ssZp": 3.232, "Dp": 3.487, "splay_angle": 173.034, "splay_distance": 18.007, "splay_ratio": 0.998, "d22": null, "d64": null, "eta": -159.080, "theta": 107.301, "eta_prime": -159.537, "theta_prime": 102.698, "eta_base": -172.855, "theta_base": -65.145, "v0": 8.112, "v1": -28.620, "v2": 37.150, "v3": -33.450, "v4": 16.016, "amplitude": 37.380, "phase_angle": 6.355, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.005, "origin": [ 168.229, 224.538, 142.928 ], "x_axis": [ 0.872, -0.489, 0.023 ], "y_axis": [ 0.404, 0.693, -0.597 ], "z_axis": [ 0.276, 0.530, 0.802 ], "quaternion": [ 0.918, -0.307, 0.069, -0.243 ] } }, { "index": 2240, "index_chain": 2240, "chain_name": "A", "nt_resnum": 2436, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2436", "linked_nts": [ "///A/2435", "///A/2437" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop,cap-donor,phosphate,splayed-apart", "alpha": 105.771, "beta": 112.315, "gamma": 9.692, "delta": 83.650, "epsilon": 152.322, "zeta": 44.748, "epsilon_zeta": 107.574, "bb_type": "--", "chi": -160.261, "glyco_bond": "anti", "C5prime_xyz": [ -1.029, 8.658, 0.624 ], "P_xyz": [ 1.208, 7.937, 1.791 ], "form": "A", "ssZp": 3.763, "Dp": 3.877, "splay_angle": 19.371, "splay_distance": 3.242, "splay_ratio": 0.172, "d22": null, "d64": null, "eta": -41.723, "theta": -86.990, "eta_prime": -33.643, "theta_prime": -124.819, "eta_base": 132.925, "theta_base": -125.366, "v0": 2.928, "v1": -22.326, "v2": 32.119, "v3": -31.396, "v4": 18.058, "amplitude": 33.068, "phase_angle": 13.756, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.045, "frame": { "rmsd": 0.014, "origin": [ 170.479, 241.877, 138.623 ], "x_axis": [ 0.740, -0.146, 0.657 ], "y_axis": [ -0.426, -0.858, 0.289 ], "z_axis": [ 0.521, -0.493, -0.697 ], "quaternion": [ 0.215, 0.907, -0.158, 0.324 ] } }, { "index": 2241, "index_chain": 2241, "chain_name": "A", "nt_resnum": 2437, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2437", "linked_nts": [ "///A/2436", "///A/2438" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,kissing-loop,phosphate", "alpha": 173.452, "beta": 84.397, "gamma": 137.530, "delta": 82.344, "epsilon": 177.781, "zeta": 125.993, "epsilon_zeta": 51.788, "bb_type": "--", "chi": 179.702, "glyco_bond": "anti", "C5prime_xyz": [ -0.993, 8.128, 1.707 ], "P_xyz": [ -0.577, 9.742, -0.308 ], "form": ".", "ssZp": 4.411, "Dp": 4.468, "splay_angle": 48.875, "splay_distance": 6.900, "splay_ratio": 0.416, "d22": null, "d64": null, "eta": 141.724, "theta": -40.159, "eta_prime": 161.570, "theta_prime": -114.952, "eta_base": -167.668, "theta_base": -99.511, "v0": 11.011, "v1": -31.966, "v2": 39.724, "v3": -34.376, "v4": 14.784, "amplitude": 39.775, "phase_angle": 2.895, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.108, "frame": { "rmsd": 0.008, "origin": [ 172.289, 242.281, 135.963 ], "x_axis": [ 0.534, -0.419, 0.735 ], "y_axis": [ -0.567, -0.822, -0.056 ], "z_axis": [ 0.628, -0.386, -0.676 ], "quaternion": [ 0.095, 0.871, -0.283, 0.391 ] } }, { "index": 2242, "index_chain": 2242, "chain_name": "A", "nt_resnum": 2438, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2438", "linked_nts": [ "///A/2437", "///A/2439" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,kissing-loop", "alpha": 148.026, "beta": 94.325, "gamma": 85.675, "delta": 78.552, "epsilon": -149.108, "zeta": -71.080, "epsilon_zeta": -78.027, "bb_type": "BI", "chi": -169.795, "glyco_bond": "anti", "C5prime_xyz": [ -1.560, 8.714, 1.072 ], "P_xyz": [ 0.285, 8.673, -0.774 ], "form": "A", "ssZp": 4.610, "Dp": 4.644, "splay_angle": 22.943, "splay_distance": 3.539, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 31.255, "theta": -132.602, "eta_prime": 138.012, "theta_prime": -151.935, "eta_base": -166.159, "theta_base": -119.726, "v0": 0.936, "v1": -24.322, "v2": 37.242, "v3": -37.653, "v4": 23.132, "amplitude": 38.989, "phase_angle": 17.221, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 177.249, 237.613, 134.855 ], "x_axis": [ -0.559, -0.344, 0.755 ], "y_axis": [ -0.789, -0.059, -0.611 ], "z_axis": [ 0.254, -0.937, -0.239 ], "quaternion": [ -0.190, -0.430, 0.659, -0.587 ] } }, { "index": 2243, "index_chain": 2243, "chain_name": "A", "nt_resnum": 2439, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2439", "linked_nts": [ "///A/2438", "///A/2440" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop,kissing-loop", "alpha": -62.002, "beta": 164.201, "gamma": 56.745, "delta": 80.131, "epsilon": -147.085, "zeta": -71.263, "epsilon_zeta": -75.822, "bb_type": "BI", "chi": -171.753, "glyco_bond": "anti", "C5prime_xyz": [ -1.348, 8.582, 1.202 ], "P_xyz": [ 1.256, 8.863, 1.301 ], "form": "A", "ssZp": 4.662, "Dp": 4.687, "splay_angle": 24.494, "splay_distance": 3.678, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 165.678, "theta": -140.521, "eta_prime": -176.779, "theta_prime": -139.556, "eta_base": -115.257, "theta_base": -99.616, "v0": 3.979, "v1": -26.603, "v2": 37.935, "v3": -36.579, "v4": 20.569, "amplitude": 38.904, "phase_angle": 12.819, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.930, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 177.663, 234.292, 136.004 ], "x_axis": [ -0.932, -0.324, 0.162 ], "y_axis": [ -0.218, 0.147, -0.965 ], "z_axis": [ 0.289, -0.935, -0.207 ], "quaternion": [ 0.042, -0.179, 0.756, -0.628 ] } }, { "index": 2244, "index_chain": 2244, "chain_name": "A", "nt_resnum": 2440, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2440", "linked_nts": [ "///A/2439", "///A/2441" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,kissing-loop", "alpha": -60.891, "beta": 162.580, "gamma": 59.799, "delta": 82.792, "epsilon": -133.584, "zeta": -91.865, "epsilon_zeta": -41.719, "bb_type": "BI", "chi": -175.109, "glyco_bond": "anti", "C5prime_xyz": [ -1.326, 8.417, 1.420 ], "P_xyz": [ 1.288, 8.551, 1.590 ], "form": "A", "ssZp": 4.669, "Dp": 4.714, "splay_angle": 23.295, "splay_distance": 3.501, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 171.628, "theta": -146.201, "eta_prime": -170.510, "theta_prime": -145.177, "eta_base": -110.321, "theta_base": -117.928, "v0": 4.940, "v1": -26.068, "v2": 36.214, "v3": -34.360, "v4": 18.578, "amplitude": 36.908, "phase_angle": 11.132, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.883, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 176.965, 230.699, 136.365 ], "x_axis": [ -0.831, -0.158, -0.534 ], "y_axis": [ 0.465, 0.330, -0.821 ], "z_axis": [ 0.306, -0.931, -0.201 ], "quaternion": [ 0.273, 0.100, 0.768, -0.570 ] } }, { "index": 2245, "index_chain": 2245, "chain_name": "A", "nt_resnum": 2441, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2441", "linked_nts": [ "///A/2440", "///A/2442" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop", "alpha": -51.203, "beta": 147.743, "gamma": 55.709, "delta": 82.558, "epsilon": -130.927, "zeta": -58.305, "epsilon_zeta": -72.622, "bb_type": "BI", "chi": -178.767, "glyco_bond": "anti", "C5prime_xyz": [ -1.536, 8.360, 1.590 ], "P_xyz": [ 1.077, 8.486, 1.621 ], "form": ".", "ssZp": 4.712, "Dp": 4.724, "splay_angle": 30.581, "splay_distance": 4.884, "splay_ratio": 0.270, "d22": null, "d64": null, "eta": 168.700, "theta": -111.644, "eta_prime": -176.841, "theta_prime": -113.033, "eta_base": -132.177, "theta_base": -69.910, "v0": 3.450, "v1": -25.139, "v2": 36.061, "v3": -35.076, "v4": 19.925, "amplitude": 37.068, "phase_angle": 13.386, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.468, "filter_rmsd": 0.037, "frame": { "rmsd": 0.009, "origin": [ 176.942, 227.199, 136.423 ], "x_axis": [ -0.448, 0.061, -0.892 ], "y_axis": [ 0.836, 0.382, -0.394 ], "z_axis": [ 0.316, -0.922, -0.222 ], "quaternion": [ 0.422, 0.313, 0.716, -0.459 ] } }, { "index": 2246, "index_chain": 2246, "chain_name": "A", "nt_resnum": 2442, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2442", "linked_nts": [ "///A/2441", "///A/2443" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,kissing-loop", "alpha": -65.579, "beta": 173.150, "gamma": 52.029, "delta": 80.363, "epsilon": -147.328, "zeta": -67.665, "epsilon_zeta": -79.663, "bb_type": "BI", "chi": -168.653, "glyco_bond": "anti", "C5prime_xyz": [ -1.797, 8.740, 0.980 ], "P_xyz": [ 0.655, 9.426, 1.599 ], "form": "A", "ssZp": 4.495, "Dp": 4.564, "splay_angle": 20.721, "splay_distance": 3.418, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": 158.927, "theta": -145.633, "eta_prime": -174.729, "theta_prime": -152.122, "eta_base": -102.189, "theta_base": -134.625, "v0": -1.845, "v1": -20.795, "v2": 34.174, "v3": -36.218, "v4": 24.006, "amplitude": 36.712, "phase_angle": 21.426, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.758, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 176.341, 224.838, 132.190 ], "x_axis": [ 0.383, 0.511, -0.770 ], "y_axis": [ 0.850, 0.131, 0.510 ], "z_axis": [ 0.361, -0.850, -0.384 ], "quaternion": [ 0.532, 0.640, 0.532, -0.160 ] } }, { "index": 2247, "index_chain": 2247, "chain_name": "A", "nt_resnum": 2443, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2443", "linked_nts": [ "///A/2442", "///A/2444" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end", "alpha": -122.143, "beta": 148.035, "gamma": 112.202, "delta": 81.753, "epsilon": -99.789, "zeta": -86.495, "epsilon_zeta": -13.294, "bb_type": "--", "chi": 173.834, "glyco_bond": "anti", "C5prime_xyz": [ -1.485, 8.279, 1.998 ], "P_xyz": [ 0.630, 9.563, 1.133 ], "form": ".", "ssZp": 4.797, "Dp": 4.789, "splay_angle": 21.855, "splay_distance": 3.309, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 165.402, "theta": -143.358, "eta_prime": 172.844, "theta_prime": -153.800, "eta_base": -156.624, "theta_base": -121.795, "v0": 3.743, "v1": -26.250, "v2": 37.401, "v3": -36.173, "v4": 20.516, "amplitude": 38.394, "phase_angle": 13.057, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 175.615, 222.235, 130.097 ], "x_axis": [ 0.683, 0.600, -0.415 ], "y_axis": [ 0.616, -0.169, 0.769 ], "z_axis": [ 0.391, -0.782, -0.486 ], "quaternion": [ 0.507, 0.765, 0.398, -0.008 ] } }, { "index": 2248, "index_chain": 2248, "chain_name": "A", "nt_resnum": 2444, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2444", "linked_nts": [ "///A/2443", "///A/2445" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": -130.834, "beta": 130.073, "gamma": 105.176, "delta": 91.004, "epsilon": 147.298, "zeta": 149.315, "epsilon_zeta": -2.016, "bb_type": "--", "chi": 153.714, "glyco_bond": "anti", "C5prime_xyz": [ -1.753, 7.300, 2.870 ], "P_xyz": [ 0.747, 8.115, 2.558 ], "form": ".", "ssZp": 2.202, "Dp": 3.909, "splay_angle": 5.484, "splay_distance": 2.122, "splay_ratio": 0.150, "d22": null, "d64": null, "eta": 114.570, "theta": 10.510, "eta_prime": 165.081, "theta_prime": -85.856, "eta_base": -137.074, "theta_base": -51.905, "v0": 13.307, "v1": -30.948, "v2": 35.618, "v3": -29.061, "v4": 10.088, "amplitude": 35.657, "phase_angle": 357.333, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.024, "frame": { "rmsd": 0.024, "origin": [ 176.809, 220.260, 127.726 ], "x_axis": [ 0.419, 0.745, 0.519 ], "y_axis": [ -0.024, -0.563, 0.826 ], "z_axis": [ 0.908, -0.359, -0.218 ], "quaternion": [ 0.399, 0.742, 0.243, 0.481 ] } }, { "index": 2249, "index_chain": 2249, "chain_name": "A", "nt_resnum": 2445, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2445", "linked_nts": [ "///A/2444", "///A/2446" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,cap-acceptor,phosphate", "alpha": 172.589, "beta": 104.280, "gamma": 77.132, "delta": 148.222, "epsilon": -120.198, "zeta": -126.630, "epsilon_zeta": 6.432, "bb_type": "--", "chi": -68.856, "glyco_bond": "--", "C5prime_xyz": [ -2.378, 6.707, -3.182 ], "P_xyz": [ -0.563, 4.859, -3.569 ], "form": ".", "ssZp": -0.178, "Dp": 1.578, "splay_angle": 23.319, "splay_distance": 4.404, "splay_ratio": 0.235, "d22": 4.303, "d64": 3.007, "eta": 55.082, "theta": -77.705, "eta_prime": 176.625, "theta_prime": -147.496, "eta_base": -103.858, "theta_base": -163.341, "v0": -12.329, "v1": 28.184, "v2": -32.541, "v3": 26.168, "v4": -8.848, "amplitude": 32.590, "phase_angle": 176.858, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.006, "origin": [ 177.205, 218.189, 127.966 ], "x_axis": [ 0.422, 0.045, 0.905 ], "y_axis": [ 0.422, -0.894, -0.153 ], "z_axis": [ 0.802, 0.447, -0.396 ], "quaternion": [ -0.182, 0.823, 0.142, 0.518 ] } }, { "index": 2250, "index_chain": 2250, "chain_name": "A", "nt_resnum": 2446, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2446", "linked_nts": [ "///A/2445", "///A/2447" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,cap-donor,cap-acceptor", "alpha": 87.257, "beta": -148.349, "gamma": -170.655, "delta": 141.461, "epsilon": -100.323, "zeta": -99.864, "epsilon_zeta": -0.459, "bb_type": "--", "chi": -65.799, "glyco_bond": "--", "C5prime_xyz": [ -3.325, 6.764, -3.073 ], "P_xyz": [ -3.215, 5.389, -5.303 ], "form": ".", "ssZp": 0.195, "Dp": 1.142, "splay_angle": 48.019, "splay_distance": 7.783, "splay_ratio": 0.434, "d22": null, "d64": null, "eta": 166.030, "theta": -146.838, "eta_prime": 176.812, "theta_prime": -142.388, "eta_base": 157.594, "theta_base": -99.904, "v0": -23.608, "v1": 34.725, "v2": -32.006, "v3": 19.243, "v4": 2.589, "amplitude": 34.753, "phase_angle": 157.066, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.059, "frame": { "rmsd": 0.007, "origin": [ 179.938, 217.360, 124.614 ], "x_axis": [ 0.079, 0.092, 0.993 ], "y_axis": [ 0.624, -0.781, 0.023 ], "z_axis": [ 0.778, 0.617, -0.119 ], "quaternion": [ -0.211, 0.703, 0.254, 0.629 ] } }, { "index": 2251, "index_chain": 2251, "chain_name": "A", "nt_resnum": 2447, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2447", "linked_nts": [ "///A/2446", "///A/2448" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,cap-acceptor", "alpha": -101.739, "beta": 154.857, "gamma": 63.756, "delta": 83.061, "epsilon": 171.168, "zeta": -84.283, "epsilon_zeta": -104.549, "bb_type": "BI", "chi": -80.764, "glyco_bond": "--", "C5prime_xyz": [ -2.630, 6.782, -3.262 ], "P_xyz": [ -1.125, 5.483, -4.968 ], "form": ".", "ssZp": 0.301, "Dp": 4.255, "splay_angle": 34.572, "splay_distance": 5.808, "splay_ratio": 0.297, "d22": null, "d64": null, "eta": 125.502, "theta": -145.832, "eta_prime": 168.699, "theta_prime": -164.681, "eta_base": -156.630, "theta_base": -168.126, "v0": 2.654, "v1": -23.792, "v2": 34.628, "v3": -34.042, "v4": 19.844, "amplitude": 35.758, "phase_angle": 14.439, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.078, "filter_rmsd": 0.037, "frame": { "rmsd": 0.008, "origin": [ 185.556, 212.351, 126.595 ], "x_axis": [ -0.394, -0.804, 0.445 ], "y_axis": [ 0.541, -0.594, -0.595 ], "z_axis": [ 0.743, 0.006, 0.669 ], "quaternion": [ -0.413, 0.365, -0.181, 0.815 ] } }, { "index": 2252, "index_chain": 2252, "chain_name": "A", "nt_resnum": 2448, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2448", "linked_nts": [ "///A/2447", "///A/2449" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop", "alpha": 162.479, "beta": -146.650, "gamma": 160.691, "delta": 82.073, "epsilon": -118.636, "zeta": -91.926, "epsilon_zeta": -26.710, "bb_type": "--", "chi": -156.604, "glyco_bond": "anti", "C5prime_xyz": [ -1.434, 8.749, 0.320 ], "P_xyz": [ 0.266, 9.547, -1.514 ], "form": ".", "ssZp": 4.115, "Dp": 4.701, "splay_angle": 6.014, "splay_distance": 3.317, "splay_ratio": 0.213, "d22": 6.620, "d64": 4.925, "eta": 167.626, "theta": -145.549, "eta_prime": 174.714, "theta_prime": -146.811, "eta_base": -174.066, "theta_base": 5.744, "v0": 1.617, "v1": -23.352, "v2": 34.928, "v3": -34.929, "v4": 21.031, "amplitude": 36.351, "phase_angle": 16.082, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.277, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 190.126, 210.305, 129.539 ], "x_axis": [ -0.758, -0.652, 0.028 ], "y_axis": [ 0.273, -0.356, -0.894 ], "z_axis": [ 0.592, -0.670, 0.448 ], "quaternion": [ -0.289, 0.194, -0.488, 0.800 ] } }, { "index": 2253, "index_chain": 2253, "chain_name": "A", "nt_resnum": 2449, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2449", "linked_nts": [ "///A/2448", "///A/2450" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,cap-donor,phosphate", "alpha": -118.216, "beta": -171.342, "gamma": 73.443, "delta": 146.207, "epsilon": -155.354, "zeta": -148.533, "epsilon_zeta": -6.821, "bb_type": "--", "chi": 75.011, "glyco_bond": "syn", "C5prime_xyz": [ -5.141, 4.766, 1.912 ], "P_xyz": [ -5.438, 2.159, 2.018 ], "form": ".", "ssZp": -1.928, "Dp": 1.968, "splay_angle": 41.279, "splay_distance": 6.459, "splay_ratio": 0.377, "d22": null, "d64": null, "eta": 129.266, "theta": -127.442, "eta_prime": 162.126, "theta_prime": -138.562, "eta_base": -28.626, "theta_base": -108.814, "v0": -22.125, "v1": 35.848, "v2": -35.108, "v3": 23.292, "v4": -0.947, "amplitude": 36.779, "phase_angle": 162.661, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.069, "frame": { "rmsd": 0.008, "origin": [ 192.027, 209.045, 127.131 ], "x_axis": [ -0.345, 0.669, 0.658 ], "y_axis": [ 0.737, -0.241, 0.632 ], "z_axis": [ 0.582, 0.703, -0.409 ], "quaternion": [ -0.031, 0.571, 0.615, 0.542 ] } }, { "index": 2254, "index_chain": 2254, "chain_name": "A", "nt_resnum": 2450, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2450", "linked_nts": [ "///A/2449", "///A/2451" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,cap-acceptor,phosphate,splayed-apart", "alpha": 23.756, "beta": 127.222, "gamma": 0.693, "delta": 139.366, "epsilon": 63.514, "zeta": -168.626, "epsilon_zeta": -127.860, "bb_type": "--", "chi": 135.803, "glyco_bond": "syn", "C5prime_xyz": [ -2.912, 6.813, 3.149 ], "P_xyz": [ -3.333, 4.650, 4.587 ], "form": ".", "ssZp": -1.218, "Dp": 1.267, "splay_angle": 118.888, "splay_distance": 16.039, "splay_ratio": 0.861, "d22": null, "d64": null, "eta": 152.296, "theta": 126.760, "eta_prime": -140.451, "theta_prime": 79.328, "eta_base": -107.202, "theta_base": 61.425, "v0": -17.947, "v1": 30.556, "v2": -30.910, "v3": 21.364, "v4": -2.336, "amplitude": 31.943, "phase_angle": 165.387, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 191.420, 202.684, 128.075 ], "x_axis": [ -0.357, 0.907, -0.223 ], "y_axis": [ 0.539, 0.395, 0.744 ], "z_axis": [ 0.763, 0.145, -0.630 ], "quaternion": [ 0.319, 0.468, 0.772, 0.288 ] } }, { "index": 2255, "index_chain": 2255, "chain_name": "A", "nt_resnum": 2451, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2451", "linked_nts": [ "///A/2450", "///A/2452" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": 151.749, "beta": -133.451, "gamma": -176.306, "delta": 148.270, "epsilon": -164.735, "zeta": 71.300, "epsilon_zeta": 123.965, "bb_type": "--", "chi": -154.191, "glyco_bond": "anti", "C5prime_xyz": [ -2.086, 8.737, 0.602 ], "P_xyz": [ 0.189, 9.668, -0.325 ], "form": ".", "ssZp": 1.277, "Dp": 2.075, "splay_angle": 135.361, "splay_distance": 15.095, "splay_ratio": 0.926, "d22": 12.426, "d64": 14.054, "eta": 149.352, "theta": 17.518, "eta_prime": 159.238, "theta_prime": -3.516, "eta_base": 162.855, "theta_base": 67.823, "v0": -23.614, "v1": 38.320, "v2": -37.447, "v3": 24.770, "v4": -0.980, "amplitude": 39.249, "phase_angle": 162.570, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.059, "frame": { "rmsd": 0.006, "origin": [ 202.466, 208.177, 138.325 ], "x_axis": [ -0.214, 0.511, -0.832 ], "y_axis": [ -0.666, -0.699, -0.259 ], "z_axis": [ -0.714, 0.499, 0.490 ], "quaternion": [ 0.380, -0.499, 0.078, 0.775 ] } }, { "index": 2256, "index_chain": 2256, "chain_name": "A", "nt_resnum": 2452, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2452", "linked_nts": [ "///A/2451", "///A/2453" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BII,non-stack,non-pair-contact,ss-non-loop,cap-acceptor,phosphate,splayed-apart", "alpha": -97.882, "beta": 145.936, "gamma": 131.681, "delta": 150.848, "epsilon": -56.314, "zeta": -154.220, "epsilon_zeta": 97.906, "bb_type": "BII", "chi": -65.430, "glyco_bond": "--", "C5prime_xyz": [ -2.838, 6.567, -3.108 ], "P_xyz": [ -2.021, 4.983, -5.039 ], "form": ".", "ssZp": -0.587, "Dp": 0.569, "splay_angle": 109.671, "splay_distance": 16.047, "splay_ratio": 0.818, "d22": 11.276, "d64": 13.643, "eta": -55.064, "theta": 158.220, "eta_prime": -56.366, "theta_prime": -173.013, "eta_base": -127.376, "theta_base": -131.141, "v0": -14.807, "v1": 31.066, "v2": -34.520, "v3": 26.925, "v4": -7.807, "amplitude": 34.710, "phase_angle": 174.013, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 199.386, 193.933, 142.259 ], "x_axis": [ 0.569, -0.278, 0.774 ], "y_axis": [ -0.521, 0.606, 0.601 ], "z_axis": [ -0.636, -0.746, 0.200 ], "quaternion": [ 0.770, 0.437, -0.457, 0.079 ] } }, { "index": 2257, "index_chain": 2257, "chain_name": "A", "nt_resnum": 2453, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2453", "linked_nts": [ "///A/2452", "///A/2454" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,splayed-apart", "alpha": -80.235, "beta": 79.388, "gamma": 175.444, "delta": 144.939, "epsilon": -37.838, "zeta": -150.552, "epsilon_zeta": 112.714, "bb_type": "--", "chi": -112.216, "glyco_bond": "anti", "C5prime_xyz": [ -1.700, 8.330, -1.628 ], "P_xyz": [ -2.297, 8.526, -4.174 ], "form": ".", "ssZp": -0.546, "Dp": 0.545, "splay_angle": 124.930, "splay_distance": 18.601, "splay_ratio": 0.887, "d22": null, "d64": null, "eta": -24.312, "theta": 113.081, "eta_prime": -41.149, "theta_prime": 134.389, "eta_base": -37.856, "theta_base": 145.937, "v0": -17.700, "v1": 31.841, "v2": -32.998, "v3": 23.724, "v4": -4.006, "amplitude": 33.750, "phase_angle": 167.879, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 185.315, 198.288, 148.630 ], "x_axis": [ -0.677, 0.730, -0.095 ], "y_axis": [ 0.308, 0.164, -0.937 ], "z_axis": [ -0.668, -0.664, -0.335 ], "quaternion": [ -0.194, 0.352, 0.738, -0.543 ] } }, { "index": 2258, "index_chain": 2258, "chain_name": "A", "nt_resnum": 2454, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2454", "linked_nts": [ "///A/2453", "///A/2455" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,phosphate,splayed-apart", "alpha": -63.554, "beta": -90.811, "gamma": -2.189, "delta": 131.181, "epsilon": 58.152, "zeta": -162.040, "epsilon_zeta": -139.808, "bb_type": "--", "chi": -108.708, "glyco_bond": "anti", "C5prime_xyz": [ -2.542, 8.283, -1.900 ], "P_xyz": [ -2.984, 10.682, -0.879 ], "form": ".", "ssZp": 0.727, "Dp": 1.420, "splay_angle": 156.480, "splay_distance": 17.801, "splay_ratio": 0.979, "d22": null, "d64": null, "eta": -64.619, "theta": 62.584, "eta_prime": -54.911, "theta_prime": 41.140, "eta_base": -54.771, "theta_base": 11.251, "v0": -25.326, "v1": 33.681, "v2": -28.939, "v3": 15.101, "v4": 6.216, "amplitude": 33.207, "phase_angle": 150.631, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 197.882, 186.456, 141.697 ], "x_axis": [ 0.073, -0.262, -0.962 ], "y_axis": [ -0.461, 0.847, -0.265 ], "z_axis": [ 0.884, 0.463, -0.059 ], "quaternion": [ 0.682, -0.267, 0.677, 0.073 ] } }, { "index": 2259, "index_chain": 2259, "chain_name": "A", "nt_resnum": 2455, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2455", "linked_nts": [ "///A/2454", "///A/2456" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": 37.001, "beta": 83.116, "gamma": -96.118, "delta": 144.562, "epsilon": -154.979, "zeta": 81.651, "epsilon_zeta": 123.371, "bb_type": "--", "chi": 88.240, "glyco_bond": "syn", "C5prime_xyz": [ -4.898, 5.299, 2.385 ], "P_xyz": [ -7.356, 6.212, 2.395 ], "form": ".", "ssZp": -1.982, "Dp": 2.023, "splay_angle": 125.754, "splay_distance": 18.006, "splay_ratio": 0.890, "d22": null, "d64": null, "eta": 36.826, "theta": -10.338, "eta_prime": 33.047, "theta_prime": -55.686, "eta_base": 56.486, "theta_base": -52.988, "v0": -26.189, "v1": 38.887, "v2": -35.954, "v3": 21.866, "v4": 2.483, "amplitude": 38.899, "phase_angle": 157.563, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.045, "frame": { "rmsd": 0.015, "origin": [ 189.842, 201.493, 146.807 ], "x_axis": [ -0.496, 0.446, 0.745 ], "y_axis": [ -0.036, -0.868, 0.495 ], "z_axis": [ 0.867, 0.219, 0.447 ], "quaternion": [ 0.144, 0.481, 0.213, 0.838 ] } }, { "index": 2260, "index_chain": 2260, "chain_name": "A", "nt_resnum": 2456, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2456", "linked_nts": [ "///A/2455", "///A/2457" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": 160.475, "beta": 66.725, "gamma": -124.227, "delta": 143.906, "epsilon": -94.905, "zeta": -118.943, "epsilon_zeta": 24.037, "bb_type": "--", "chi": -75.894, "glyco_bond": "anti", "C5prime_xyz": [ -3.058, 7.236, -2.872 ], "P_xyz": [ -5.240, 8.454, -3.679 ], "form": ".", "ssZp": 0.440, "Dp": 0.874, "splay_angle": 94.902, "splay_distance": 15.496, "splay_ratio": 0.737, "d22": null, "d64": null, "eta": -145.137, "theta": -109.572, "eta_prime": -99.985, "theta_prime": -132.456, "eta_base": -100.017, "theta_base": -141.592, "v0": -23.625, "v1": 36.308, "v2": -34.446, "v3": 21.704, "v4": 1.024, "amplitude": 36.731, "phase_angle": 159.682, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 195.850, 187.147, 137.735 ], "x_axis": [ 0.337, -0.932, 0.132 ], "y_axis": [ -0.691, -0.149, 0.707 ], "z_axis": [ -0.639, -0.330, -0.695 ], "quaternion": [ 0.351, 0.738, -0.550, -0.172 ] } }, { "index": 2261, "index_chain": 2261, "chain_name": "A", "nt_resnum": 2457, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2457", "linked_nts": [ "///A/2456", "///A/2458" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,cap-acceptor,phosphate,splayed-apart", "alpha": 70.846, "beta": 125.116, "gamma": -128.772, "delta": 83.676, "epsilon": -157.268, "zeta": -141.938, "epsilon_zeta": -15.330, "bb_type": "--", "chi": -90.166, "glyco_bond": "anti", "C5prime_xyz": [ -2.191, 7.268, -3.027 ], "P_xyz": [ -2.842, 9.188, -4.686 ], "form": ".", "ssZp": 0.451, "Dp": 4.583, "splay_angle": 76.068, "splay_distance": 11.542, "splay_ratio": 0.619, "d22": null, "d64": null, "eta": 66.849, "theta": 54.039, "eta_prime": 104.571, "theta_prime": 37.305, "eta_base": 129.461, "theta_base": 44.181, "v0": 4.975, "v1": -25.502, "v2": 35.177, "v3": -33.297, "v4": 17.906, "amplitude": 35.816, "phase_angle": 10.838, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 181.184, 182.811, 140.234 ], "x_axis": [ 0.481, -0.829, 0.284 ], "y_axis": [ 0.483, 0.522, 0.703 ], "z_axis": [ -0.731, -0.201, 0.652 ], "quaternion": [ 0.815, 0.277, -0.312, -0.403 ] } }, { "index": 2262, "index_chain": 2262, "chain_name": "A", "nt_resnum": 2458, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2458", "linked_nts": [ "///A/2457", "///A/2459" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-pair-contact,ss-non-loop,cap-acceptor,splayed-apart", "alpha": -26.550, "beta": -60.011, "gamma": -135.178, "delta": 78.592, "epsilon": 163.322, "zeta": 35.498, "epsilon_zeta": 127.824, "bb_type": "--", "chi": -55.387, "glyco_bond": "--", "C5prime_xyz": [ -3.892, 5.892, -3.273 ], "P_xyz": [ -6.375, 5.166, -2.795 ], "form": ".", "ssZp": -1.358, "Dp": 4.123, "splay_angle": 128.523, "splay_distance": 14.638, "splay_ratio": 0.907, "d22": null, "d64": null, "eta": -166.863, "theta": -150.360, "eta_prime": 155.592, "theta_prime": -113.083, "eta_base": 178.132, "theta_base": -87.573, "v0": -3.269, "v1": -19.989, "v2": 34.202, "v3": -37.080, "v4": 25.472, "amplitude": 37.304, "phase_angle": 23.528, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 183.057, 194.188, 140.767 ], "x_axis": [ -0.319, 0.943, -0.093 ], "y_axis": [ 0.459, 0.240, 0.855 ], "z_axis": [ 0.829, 0.230, -0.509 ], "quaternion": [ 0.321, 0.488, 0.719, 0.377 ] } }, { "index": 2263, "index_chain": 2263, "chain_name": "A", "nt_resnum": 2459, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2459", "linked_nts": [ "///A/2458", "///A/2460" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-pair-contact,ss-non-loop,cap-acceptor,phosphate,splayed-apart", "alpha": 172.219, "beta": -153.213, "gamma": 150.074, "delta": 83.724, "epsilon": -119.192, "zeta": -52.696, "epsilon_zeta": -66.496, "bb_type": "--", "chi": 43.688, "glyco_bond": "syn", "C5prime_xyz": [ -5.304, 3.491, 0.893 ], "P_xyz": [ -5.015, 1.969, 3.004 ], "form": ".", "ssZp": -3.073, "Dp": 4.673, "splay_angle": 85.458, "splay_distance": 11.477, "splay_ratio": 0.682, "d22": null, "d64": null, "eta": -166.509, "theta": -80.790, "eta_prime": -121.932, "theta_prime": -98.870, "eta_base": -95.782, "theta_base": -107.875, "v0": 2.203, "v1": -23.165, "v2": 34.020, "v3": -33.757, "v4": 19.905, "amplitude": 35.240, "phase_angle": 15.122, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.008, "origin": [ 184.020, 194.995, 155.351 ], "x_axis": [ -0.828, -0.255, 0.499 ], "y_axis": [ -0.559, 0.439, -0.704 ], "z_axis": [ -0.039, -0.861, -0.506 ], "quaternion": [ -0.162, -0.244, 0.833, -0.470 ] } }, { "index": 2264, "index_chain": 2264, "chain_name": "A", "nt_resnum": 2460, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2460", "linked_nts": [ "///A/2459", "///A/2461" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-stack,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": 135.282, "beta": 138.886, "gamma": -87.566, "delta": 82.760, "epsilon": -145.231, "zeta": -68.623, "epsilon_zeta": -76.609, "bb_type": "BI", "chi": 155.111, "glyco_bond": "--", "C5prime_xyz": [ -1.012, 7.130, 2.820 ], "P_xyz": [ -0.584, 7.419, 5.393 ], "form": ".", "ssZp": 4.387, "Dp": 4.755, "splay_angle": 60.481, "splay_distance": 8.711, "splay_ratio": 0.522, "d22": null, "d64": null, "eta": -174.464, "theta": -153.971, "eta_prime": -149.083, "theta_prime": -173.509, "eta_base": -131.782, "theta_base": 120.447, "v0": 16.650, "v1": -36.601, "v2": 41.812, "v3": -33.140, "v4": 10.444, "amplitude": 41.930, "phase_angle": 355.704, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.110, "frame": { "rmsd": 0.009, "origin": [ 193.418, 201.072, 157.892 ], "x_axis": [ 0.389, -0.886, -0.254 ], "y_axis": [ -0.915, -0.339, -0.218 ], "z_axis": [ 0.107, 0.317, -0.942 ], "quaternion": [ -0.164, 0.817, -0.551, -0.045 ] } }, { "index": 2265, "index_chain": 2265, "chain_name": "A", "nt_resnum": 2461, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2461", "linked_nts": [ "///A/2460", "///A/2462" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop", "alpha": -174.754, "beta": -169.700, "gamma": 60.799, "delta": 81.278, "epsilon": -131.286, "zeta": -156.240, "epsilon_zeta": 24.954, "bb_type": "--", "chi": -167.663, "glyco_bond": "anti", "C5prime_xyz": [ -1.769, 8.745, 0.923 ], "P_xyz": [ 0.616, 9.485, 1.730 ], "form": ".", "ssZp": 4.438, "Dp": 4.575, "splay_angle": 16.668, "splay_distance": 4.314, "splay_ratio": 0.297, "d22": null, "d64": null, "eta": 69.021, "theta": 164.957, "eta_prime": 83.316, "theta_prime": -149.753, "eta_base": 19.309, "theta_base": -134.817, "v0": -2.973, "v1": -19.096, "v2": 32.519, "v3": -35.117, "v4": 24.059, "amplitude": 35.400, "phase_angle": 23.276, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.445, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 187.859, 204.855, 163.430 ], "x_axis": [ -0.915, -0.383, -0.128 ], "y_axis": [ 0.079, 0.142, -0.987 ], "z_axis": [ 0.396, -0.913, -0.100 ], "quaternion": [ 0.178, -0.103, 0.734, -0.647 ] } }, { "index": 2266, "index_chain": 2266, "chain_name": "A", "nt_resnum": 2462, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2462", "linked_nts": [ "///A/2461", "///A/2463" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-stack,non-pair-contact,ss-non-loop,ribose-zipper,cap-donor,cap-acceptor,phosphate", "alpha": -162.134, "beta": -121.666, "gamma": 129.098, "delta": 84.580, "epsilon": 169.549, "zeta": -95.052, "epsilon_zeta": -95.399, "bb_type": "BI", "chi": -55.193, "glyco_bond": "--", "C5prime_xyz": [ -3.033, 5.356, -3.521 ], "P_xyz": [ -2.053, 2.957, -3.956 ], "form": ".", "ssZp": -1.703, "Dp": 4.351, "splay_angle": 43.511, "splay_distance": 6.681, "splay_ratio": 0.402, "d22": null, "d64": null, "eta": -176.343, "theta": -139.546, "eta_prime": 168.046, "theta_prime": -150.962, "eta_base": 176.274, "theta_base": -137.540, "v0": 9.450, "v1": -28.719, "v2": 35.997, "v3": -31.550, "v4": 14.014, "amplitude": 36.077, "phase_angle": 3.819, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.009, "origin": [ 190.803, 202.847, 160.997 ], "x_axis": [ -0.772, -0.635, -0.025 ], "y_axis": [ 0.602, -0.718, -0.350 ], "z_axis": [ 0.205, -0.285, 0.936 ], "quaternion": [ -0.334, 0.049, -0.172, 0.926 ] } }, { "index": 2267, "index_chain": 2267, "chain_name": "A", "nt_resnum": 2463, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2463", "linked_nts": [ "///A/2462", "///A/2464" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,ribose-zipper,cap-donor,cap-acceptor,phosphate", "alpha": -174.394, "beta": -117.785, "gamma": 147.143, "delta": 87.756, "epsilon": 172.935, "zeta": -85.496, "epsilon_zeta": -101.570, "bb_type": "BI", "chi": -99.153, "glyco_bond": "anti", "C5prime_xyz": [ -1.693, 7.397, -2.702 ], "P_xyz": [ -0.792, 5.438, -4.210 ], "form": ".", "ssZp": 1.654, "Dp": 4.306, "splay_angle": 81.437, "splay_distance": 13.622, "splay_ratio": 0.654, "d22": null, "d64": null, "eta": 169.435, "theta": -154.594, "eta_prime": -157.830, "theta_prime": 158.286, "eta_base": -138.572, "theta_base": 130.833, "v0": 11.209, "v1": -29.444, "v2": 35.492, "v3": -30.063, "v4": 11.989, "amplitude": 35.495, "phase_angle": 0.734, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.010, "origin": [ 191.428, 196.299, 159.832 ], "x_axis": [ -0.504, -0.490, -0.711 ], "y_axis": [ 0.845, -0.450, -0.290 ], "z_axis": [ -0.178, -0.747, 0.641 ], "quaternion": [ -0.414, -0.276, -0.322, 0.805 ] } }, { "index": 2268, "index_chain": 2268, "chain_name": "A", "nt_resnum": 2464, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2464", "linked_nts": [ "///A/2463", "///A/2465" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,A-minor", "alpha": 161.824, "beta": 136.206, "gamma": 179.955, "delta": 82.663, "epsilon": -178.724, "zeta": -88.739, "epsilon_zeta": -89.986, "bb_type": "BI", "chi": -153.797, "glyco_bond": "anti", "C5prime_xyz": [ -1.569, 8.771, 0.167 ], "P_xyz": [ -1.587, 10.905, -1.348 ], "form": "A", "ssZp": 4.096, "Dp": 4.264, "splay_angle": 20.170, "splay_distance": 3.205, "splay_ratio": 0.176, "d22": null, "d64": null, "eta": 159.712, "theta": 165.105, "eta_prime": 138.204, "theta_prime": -179.261, "eta_base": 127.562, "theta_base": -137.655, "v0": -0.406, "v1": -21.078, "v2": 33.272, "v3": -34.465, "v4": 22.011, "amplitude": 35.247, "phase_angle": 19.272, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.373, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 199.189, 192.512, 170.367 ], "x_axis": [ -0.944, 0.326, 0.054 ], "y_axis": [ -0.108, -0.149, -0.983 ], "z_axis": [ -0.313, -0.933, 0.176 ], "quaternion": [ 0.144, -0.086, -0.636, 0.753 ] } }, { "index": 2269, "index_chain": 2269, "chain_name": "A", "nt_resnum": 2465, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2465", "linked_nts": [ "///A/2464", "///A/2466" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 173.034, "beta": -125.606, "gamma": 141.362, "delta": 80.677, "epsilon": -150.909, "zeta": -114.543, "epsilon_zeta": -36.366, "bb_type": "BI", "chi": -169.386, "glyco_bond": "anti", "C5prime_xyz": [ -2.054, 8.751, 1.014 ], "P_xyz": [ 0.354, 9.245, 0.140 ], "form": "A", "ssZp": 4.339, "Dp": 4.438, "splay_angle": 17.846, "splay_distance": 2.960, "splay_ratio": 0.160, "d22": null, "d64": null, "eta": 155.894, "theta": -139.383, "eta_prime": 178.817, "theta_prime": -154.977, "eta_base": -130.424, "theta_base": -147.277, "v0": -4.135, "v1": -18.348, "v2": 32.507, "v3": -35.847, "v4": 25.190, "amplitude": 35.891, "phase_angle": 25.080, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.017, "frame": { "rmsd": 0.017, "origin": [ 197.301, 190.262, 171.650 ], "x_axis": [ -0.803, 0.291, -0.519 ], "y_axis": [ 0.386, -0.410, -0.826 ], "z_axis": [ -0.453, -0.864, 0.217 ], "quaternion": [ -0.030, -0.312, -0.542, 0.780 ] } }, { "index": 2270, "index_chain": 2270, "chain_name": "A", "nt_resnum": 2466, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2466", "linked_nts": [ "///A/2465", "///A/2467" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 151.133, "beta": -129.511, "gamma": 166.597, "delta": 81.629, "epsilon": -137.933, "zeta": -76.352, "epsilon_zeta": -61.581, "bb_type": "BI", "chi": -167.588, "glyco_bond": "anti", "C5prime_xyz": [ -1.633, 8.799, 0.934 ], "P_xyz": [ 0.333, 9.602, -0.586 ], "form": ".", "ssZp": 4.349, "Dp": 4.515, "splay_angle": 21.435, "splay_distance": 3.389, "splay_ratio": 0.186, "d22": 3.895, "d64": 3.254, "eta": 159.528, "theta": -147.064, "eta_prime": 173.580, "theta_prime": -151.091, "eta_base": -160.402, "theta_base": -97.117, "v0": -1.735, "v1": -20.517, "v2": 33.647, "v3": -35.621, "v4": 23.546, "amplitude": 36.115, "phase_angle": 21.306, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.017, "filter_rmsd": 0.065, "frame": { "rmsd": 0.008, "origin": [ 195.649, 189.031, 173.775 ], "x_axis": [ -0.551, 0.071, -0.832 ], "y_axis": [ 0.554, -0.714, -0.428 ], "z_axis": [ -0.624, -0.696, 0.354 ], "quaternion": [ -0.149, -0.450, -0.347, 0.809 ] } }, { "index": 2271, "index_chain": 2271, "chain_name": "A", "nt_resnum": 2467, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2467", "linked_nts": [ "///A/2466", "///A/2468" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart", "alpha": -51.394, "beta": 162.297, "gamma": 39.728, "delta": 81.547, "epsilon": -114.812, "zeta": 126.843, "epsilon_zeta": 118.345, "bb_type": "--", "chi": -152.829, "glyco_bond": "anti", "C5prime_xyz": [ -1.222, 8.692, 0.111 ], "P_xyz": [ 1.388, 8.904, 0.204 ], "form": ".", "ssZp": 3.928, "Dp": 4.766, "splay_angle": 159.473, "splay_distance": 18.367, "splay_ratio": 0.984, "d22": null, "d64": null, "eta": 166.012, "theta": 95.918, "eta_prime": -177.922, "theta_prime": 82.900, "eta_base": -108.639, "theta_base": -32.267, "v0": 4.581, "v1": -25.953, "v2": 36.353, "v3": -34.673, "v4": 18.984, "amplitude": 37.122, "phase_angle": 11.677, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.577, "filter_rmsd": 0.111, "frame": { "rmsd": 0.008, "origin": [ 193.085, 187.010, 172.865 ], "x_axis": [ 0.063, -0.481, -0.875 ], "y_axis": [ 0.664, -0.634, 0.396 ], "z_axis": [ -0.745, -0.606, 0.279 ], "quaternion": [ -0.421, -0.595, -0.077, 0.680 ] } }, { "index": 2272, "index_chain": 2272, "chain_name": "A", "nt_resnum": 2468, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2468", "linked_nts": [ "///A/2467", "///A/2469" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-stack,non-pair-contact,bulge,splayed-apart", "alpha": -47.978, "beta": 121.399, "gamma": 166.586, "delta": 147.640, "epsilon": -81.483, "zeta": 65.912, "epsilon_zeta": 212.605, "bb_type": "--", "chi": 116.712, "glyco_bond": "--", "C5prime_xyz": [ -3.679, 6.036, 3.134 ], "P_xyz": [ -2.651, 7.165, 5.267 ], "form": ".", "ssZp": 0.135, "Dp": 0.360, "splay_angle": 114.683, "splay_distance": 18.030, "splay_ratio": 0.842, "d22": null, "d64": null, "eta": 19.892, "theta": 62.520, "eta_prime": 0.170, "theta_prime": 70.695, "eta_base": 105.555, "theta_base": 42.501, "v0": -20.086, "v1": 34.813, "v2": -35.474, "v3": 24.812, "v4": -3.152, "amplitude": 36.538, "phase_angle": 166.142, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.046, "frame": { "rmsd": 0.017, "origin": [ 199.132, 172.411, 182.227 ], "x_axis": [ -0.730, -0.457, 0.509 ], "y_axis": [ -0.331, 0.887, 0.322 ], "z_axis": [ -0.598, 0.067, -0.798 ], "quaternion": [ -0.300, -0.213, 0.924, 0.105 ] } }, { "index": 2273, "index_chain": 2273, "chain_name": "A", "nt_resnum": 2469, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2469", "linked_nts": [ "///A/2468", "///A/2470" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,bulge,splayed-apart", "alpha": 133.642, "beta": -97.146, "gamma": -73.454, "delta": 82.878, "epsilon": -179.818, "zeta": 44.970, "epsilon_zeta": 135.213, "bb_type": "--", "chi": -176.295, "glyco_bond": "anti", "C5prime_xyz": [ -1.176, 8.462, 1.483 ], "P_xyz": [ -2.051, 10.862, 2.072 ], "form": ".", "ssZp": 4.316, "Dp": 4.379, "splay_angle": 49.660, "splay_distance": 8.431, "splay_ratio": 0.437, "d22": 6.774, "d64": 8.736, "eta": 2.400, "theta": -140.591, "eta_prime": -29.095, "theta_prime": -118.739, "eta_base": -2.151, "theta_base": -94.637, "v0": 4.516, "v1": -25.362, "v2": 35.356, "v3": -33.697, "v4": 18.453, "amplitude": 36.089, "phase_angle": 11.568, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.005, "origin": [ 191.463, 188.680, 183.488 ], "x_axis": [ 0.077, 0.652, -0.755 ], "y_axis": [ 0.930, -0.320, -0.182 ], "z_axis": [ -0.360, -0.688, -0.631 ], "quaternion": [ 0.178, 0.712, 0.555, -0.391 ] } }, { "index": 2274, "index_chain": 2274, "chain_name": "A", "nt_resnum": 2470, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2470", "linked_nts": [ "///A/2469", "///A/2471" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate", "alpha": -140.571, "beta": 112.181, "gamma": 173.775, "delta": 82.677, "epsilon": -115.179, "zeta": -86.194, "epsilon_zeta": -28.985, "bb_type": "--", "chi": -166.748, "glyco_bond": "anti", "C5prime_xyz": [ -1.019, 8.582, 0.970 ], "P_xyz": [ -1.027, 10.876, -0.272 ], "form": "A", "ssZp": 4.446, "Dp": 4.757, "splay_angle": 27.269, "splay_distance": 4.378, "splay_ratio": 0.236, "d22": 4.003, "d64": 3.820, "eta": -146.384, "theta": 173.888, "eta_prime": -114.104, "theta_prime": -170.668, "eta_base": -62.602, "theta_base": -134.891, "v0": 5.586, "v1": -26.770, "v2": 36.677, "v3": -34.452, "v4": 18.232, "amplitude": 37.267, "phase_angle": 10.208, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.006, "origin": [ 189.982, 187.337, 175.297 ], "x_axis": [ 0.032, -0.685, -0.728 ], "y_axis": [ 0.454, -0.639, 0.621 ], "z_axis": [ -0.890, -0.351, 0.290 ], "quaternion": [ -0.413, -0.588, 0.098, 0.689 ] } }, { "index": 2275, "index_chain": 2275, "chain_name": "A", "nt_resnum": 2471, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2471", "linked_nts": [ "///A/2470", "///A/2472" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,A-minor,ribose-zipper", "alpha": -57.822, "beta": 166.212, "gamma": 45.053, "delta": 80.684, "epsilon": -161.816, "zeta": -92.837, "epsilon_zeta": -68.979, "bb_type": "BI", "chi": -167.849, "glyco_bond": "anti", "C5prime_xyz": [ -1.498, 8.742, 0.956 ], "P_xyz": [ 1.001, 9.225, 1.545 ], "form": "A", "ssZp": 4.455, "Dp": 4.482, "splay_angle": 16.040, "splay_distance": 2.532, "splay_ratio": 0.141, "d22": 4.635, "d64": 4.030, "eta": 155.495, "theta": -141.898, "eta_prime": 172.906, "theta_prime": -146.518, "eta_base": -145.025, "theta_base": -127.243, "v0": -1.078, "v1": -21.300, "v2": 34.238, "v3": -35.846, "v4": 23.292, "amplitude": 36.499, "phase_angle": 20.270, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.370, "filter_rmsd": 0.060, "frame": { "rmsd": 0.006, "origin": [ 186.245, 185.165, 174.603 ], "x_axis": [ 0.758, -0.564, -0.329 ], "y_axis": [ 0.350, -0.074, 0.934 ], "z_axis": [ -0.551, -0.823, 0.141 ], "quaternion": [ 0.675, 0.650, -0.082, -0.338 ] } }, { "index": 2276, "index_chain": 2276, "chain_name": "A", "nt_resnum": 2472, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2472", "linked_nts": [ "///A/2471", null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "break,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,ribose-zipper", "alpha": -178.856, "beta": -147.381, "gamma": 136.767, "delta": 81.992, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -163.427, "glyco_bond": "anti", "C5prime_xyz": [ -1.222, 8.678, 0.741 ], "P_xyz": [ 1.035, 9.088, -0.521 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 3.848, "v1": -25.459, "v2": 36.166, "v3": -34.977, "v4": 19.642, "amplitude": 37.090, "phase_angle": 12.812, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.004, "origin": [ 184.745, 183.418, 173.552 ], "x_axis": [ 0.857, -0.470, 0.212 ], "y_axis": [ -0.264, -0.045, 0.964 ], "z_axis": [ -0.444, -0.881, -0.162 ], "quaternion": [ 0.642, 0.718, -0.255, -0.080 ] } }, { "index": 2277, "index_chain": 2277, "chain_name": "A", "nt_resnum": 2488, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2488", "linked_nts": [ null, "///A/2489" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,BI,non-pair-contact,ss-non-loop,splayed-apart", "alpha": null, "beta": -174.222, "gamma": 159.713, "delta": 149.000, "epsilon": -146.662, "zeta": -79.419, "epsilon_zeta": -67.243, "bb_type": "BI", "chi": 55.056, "glyco_bond": "syn", "C5prime_xyz": [ -5.404, 3.793, 0.891 ], "P_xyz": [ -5.497, 1.651, 2.406 ], "form": ".", "ssZp": -1.822, "Dp": 1.845, "splay_angle": 94.649, "splay_distance": 15.802, "splay_ratio": 0.737, "d22": null, "d64": null, "eta": null, "theta": -127.460, "eta_prime": null, "theta_prime": -152.113, "eta_base": null, "theta_base": -178.526, "v0": -22.543, "v1": 37.559, "v2": -37.304, "v3": 25.226, "v4": -1.874, "amplitude": 38.815, "phase_angle": 163.963, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.007, "origin": [ 203.608, 159.068, 153.944 ], "x_axis": [ -0.146, -0.187, -0.971 ], "y_axis": [ 0.915, -0.399, -0.061 ], "z_axis": [ -0.376, -0.898, 0.230 ], "quaternion": [ -0.414, -0.506, -0.360, 0.666 ] } }, { "index": 2278, "index_chain": 2278, "chain_name": "A", "nt_resnum": 2489, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2489", "linked_nts": [ "///A/2488", "///A/2490" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop,splayed-apart", "alpha": -99.289, "beta": 144.947, "gamma": -144.029, "delta": 81.284, "epsilon": -161.402, "zeta": -73.047, "epsilon_zeta": -88.355, "bb_type": "BI", "chi": -170.086, "glyco_bond": "anti", "C5prime_xyz": [ -1.909, 8.773, 1.029 ], "P_xyz": [ -2.274, 11.370, 0.889 ], "form": "A", "ssZp": 4.229, "Dp": 4.313, "splay_angle": 19.437, "splay_distance": 3.370, "splay_ratio": 0.178, "d22": 4.205, "d64": 4.202, "eta": -65.571, "theta": 179.474, "eta_prime": -57.582, "theta_prime": -173.496, "eta_base": -64.752, "theta_base": -128.728, "v0": -5.233, "v1": -17.156, "v2": 31.617, "v3": -35.574, "v4": 25.710, "amplitude": 35.453, "phase_angle": 26.898, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.006, "origin": [ 218.252, 162.616, 149.183 ], "x_axis": [ 0.894, 0.182, 0.409 ], "y_axis": [ -0.361, -0.246, 0.900 ], "z_axis": [ 0.264, -0.952, -0.154 ], "quaternion": [ 0.611, 0.757, -0.059, 0.222 ] } }, { "index": 2279, "index_chain": 2279, "chain_name": "A", "nt_resnum": 2490, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2490", "linked_nts": [ "///A/2489", "///A/2491" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop", "alpha": 166.481, "beta": -165.169, "gamma": 155.081, "delta": 80.986, "epsilon": -153.035, "zeta": -82.683, "epsilon_zeta": -70.351, "bb_type": "BI", "chi": -174.555, "glyco_bond": "anti", "C5prime_xyz": [ -1.421, 8.579, 1.390 ], "P_xyz": [ 0.540, 9.976, 0.376 ], "form": ".", "ssZp": 4.573, "Dp": 4.588, "splay_angle": 35.897, "splay_distance": 5.248, "splay_ratio": 0.308, "d22": 5.116, "d64": 5.320, "eta": 147.181, "theta": -173.488, "eta_prime": 168.433, "theta_prime": -170.134, "eta_base": -135.075, "theta_base": -142.378, "v0": 1.801, "v1": -23.850, "v2": 35.547, "v3": -35.527, "v4": 21.234, "amplitude": 36.957, "phase_angle": 15.874, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.207, "filter_rmsd": 0.063, "frame": { "rmsd": 0.004, "origin": [ 220.784, 160.724, 148.014 ], "x_axis": [ 0.458, 0.033, 0.888 ], "y_axis": [ -0.800, -0.421, 0.428 ], "z_axis": [ 0.388, -0.907, -0.167 ], "quaternion": [ 0.467, 0.715, -0.268, 0.446 ] } }, { "index": 2280, "index_chain": 2280, "chain_name": "A", "nt_resnum": 2491, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2491", "linked_nts": [ "///A/2490", "///A/2492" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-canonical,helix-end,internal-loop", "alpha": -65.051, "beta": -179.096, "gamma": 58.053, "delta": 84.418, "epsilon": -146.306, "zeta": -48.905, "epsilon_zeta": -97.401, "bb_type": "BI", "chi": -179.296, "glyco_bond": "anti", "C5prime_xyz": [ -1.106, 8.215, 1.675 ], "P_xyz": [ 1.439, 8.004, 2.303 ], "form": ".", "ssZp": 4.683, "Dp": 4.700, "splay_angle": 30.716, "splay_distance": 5.675, "splay_ratio": 0.296, "d22": 6.135, "d64": 7.181, "eta": 179.465, "theta": -99.741, "eta_prime": -173.440, "theta_prime": -130.221, "eta_base": -140.518, "theta_base": -151.908, "v0": 8.698, "v1": -28.974, "v2": 37.215, "v3": -33.185, "v4": 15.465, "amplitude": 37.385, "phase_angle": 5.475, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.859, "filter_rmsd": 0.112, "frame": { "rmsd": 0.010, "origin": [ 223.720, 156.854, 146.030 ], "x_axis": [ -0.054, -0.085, 0.995 ], "y_axis": [ -0.995, -0.080, -0.061 ], "z_axis": [ 0.085, -0.993, -0.080 ], "quaternion": [ 0.443, 0.526, -0.513, 0.513 ] } }, { "index": 2281, "index_chain": 2281, "chain_name": "A", "nt_resnum": 2492, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2492", "linked_nts": [ "///A/2491", "///A/2493" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": 155.525, "beta": 124.610, "gamma": 175.013, "delta": 83.084, "epsilon": -162.508, "zeta": -62.868, "epsilon_zeta": -99.641, "bb_type": "BI", "chi": 172.641, "glyco_bond": "anti", "C5prime_xyz": [ -1.336, 8.200, 2.085 ], "P_xyz": [ -0.819, 10.740, 1.705 ], "form": ".", "ssZp": 4.308, "Dp": 4.520, "splay_angle": 27.069, "splay_distance": 3.930, "splay_ratio": 0.234, "d22": 4.020, "d64": 3.111, "eta": 130.180, "theta": -168.672, "eta_prime": 140.722, "theta_prime": -152.122, "eta_base": 139.384, "theta_base": -78.235, "v0": 4.504, "v1": -25.418, "v2": 35.485, "v3": -33.847, "v4": 18.510, "amplitude": 36.226, "phase_angle": 11.609, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.609, "filter_rmsd": 0.067, "frame": { "rmsd": 0.007, "origin": [ 228.681, 154.736, 144.266 ], "x_axis": [ -0.257, 0.735, 0.628 ], "y_axis": [ -0.955, -0.091, -0.284 ], "z_axis": [ -0.151, -0.672, 0.725 ], "quaternion": [ 0.587, 0.166, -0.332, 0.720 ] } }, { "index": 2282, "index_chain": 2282, "chain_name": "A", "nt_resnum": 2493, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2493", "linked_nts": [ "///A/2492", "///A/2494" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": -155.333, "beta": -129.812, "gamma": 97.420, "delta": 83.390, "epsilon": -104.714, "zeta": -159.079, "epsilon_zeta": 54.364, "bb_type": "BII", "chi": -161.439, "glyco_bond": "anti", "C5prime_xyz": [ -1.242, 8.745, 0.651 ], "P_xyz": [ 1.343, 8.332, 0.903 ], "form": ".", "ssZp": 4.068, "Dp": 4.632, "splay_angle": 19.830, "splay_distance": 3.251, "splay_ratio": 0.175, "d22": 4.379, "d64": 4.017, "eta": 160.251, "theta": -147.264, "eta_prime": -177.212, "theta_prime": -142.884, "eta_base": -98.460, "theta_base": -153.670, "v0": 2.927, "v1": -24.147, "v2": 35.049, "v3": -34.316, "v4": 19.810, "amplitude": 36.134, "phase_angle": 14.079, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.008, "origin": [ 226.826, 154.568, 147.726 ], "x_axis": [ -0.964, 0.263, -0.031 ], "y_axis": [ -0.184, -0.749, -0.637 ], "z_axis": [ -0.191, -0.608, 0.770 ], "quaternion": [ 0.120, -0.060, -0.334, 0.933 ] } }, { "index": 2283, "index_chain": 2283, "chain_name": "A", "nt_resnum": 2494, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2494", "linked_nts": [ "///A/2493", "///A/2495" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,internal-loop", "alpha": 87.444, "beta": -85.623, "gamma": -169.139, "delta": 150.033, "epsilon": -151.318, "zeta": -57.412, "epsilon_zeta": -93.906, "bb_type": "BI", "chi": -155.041, "glyco_bond": "anti", "C5prime_xyz": [ -2.045, 8.704, 0.658 ], "P_xyz": [ 0.086, 8.999, -0.857 ], "form": ".", "ssZp": 0.782, "Dp": 1.783, "splay_angle": 39.139, "splay_distance": 5.901, "splay_ratio": 0.343, "d22": 6.141, "d64": 4.905, "eta": -103.799, "theta": -137.242, "eta_prime": -135.543, "theta_prime": -115.605, "eta_base": -145.417, "theta_base": -40.856, "v0": -21.439, "v1": 36.777, "v2": -37.230, "v3": 25.819, "v4": -3.007, "amplitude": 38.435, "phase_angle": 165.614, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.008, "origin": [ 227.892, 152.946, 150.333 ], "x_axis": [ -0.910, 0.262, -0.322 ], "y_axis": [ -0.106, -0.896, -0.431 ], "z_axis": [ -0.402, -0.358, 0.843 ], "quaternion": [ 0.096, -0.190, -0.206, 0.955 ] } }, { "index": 2284, "index_chain": 2284, "chain_name": "A", "nt_resnum": 2495, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2495", "linked_nts": [ "///A/2494", "///A/2496" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": 160.781, "beta": -159.235, "gamma": 114.325, "delta": 82.566, "epsilon": -134.475, "zeta": -95.128, "epsilon_zeta": -39.347, "bb_type": "BI", "chi": -91.918, "glyco_bond": "anti", "C5prime_xyz": [ -2.296, 7.342, -3.012 ], "P_xyz": [ -0.903, 6.148, -4.881 ], "form": ".", "ssZp": -0.013, "Dp": 4.687, "splay_angle": 28.912, "splay_distance": 4.913, "splay_ratio": 0.267, "d22": 4.211, "d64": 3.403, "eta": 102.545, "theta": -167.815, "eta_prime": 156.547, "theta_prime": 177.684, "eta_base": -117.737, "theta_base": 139.453, "v0": 2.857, "v1": -24.432, "v2": 35.503, "v3": -34.725, "v4": 20.147, "amplitude": 36.617, "phase_angle": 14.168, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.006, "origin": [ 225.349, 147.631, 150.009 ], "x_axis": [ -0.364, -0.768, -0.527 ], "y_axis": [ 0.591, -0.628, 0.507 ], "z_axis": [ -0.720, -0.127, 0.682 ], "quaternion": [ -0.415, -0.381, 0.116, 0.818 ] } }, { "index": 2285, "index_chain": 2285, "chain_name": "A", "nt_resnum": 2496, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2496", "linked_nts": [ "///A/2495", "///A/2497" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,ss-non-loop", "alpha": -95.725, "beta": 125.749, "gamma": 87.130, "delta": 83.821, "epsilon": -101.764, "zeta": -103.565, "epsilon_zeta": 1.802, "bb_type": "--", "chi": -114.885, "glyco_bond": "anti", "C5prime_xyz": [ -1.902, 8.260, -2.055 ], "P_xyz": [ -0.730, 7.180, -4.144 ], "form": ".", "ssZp": 1.210, "Dp": 4.606, "splay_angle": 29.696, "splay_distance": 5.243, "splay_ratio": 0.287, "d22": null, "d64": null, "eta": 155.814, "theta": -141.801, "eta_prime": 156.905, "theta_prime": -149.532, "eta_base": 134.826, "theta_base": 168.917, "v0": -0.334, "v1": -21.033, "v2": 33.044, "v3": -34.168, "v4": 21.819, "amplitude": 34.977, "phase_angle": 19.136, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 225.547, 147.705, 154.918 ], "x_axis": [ -0.439, -0.450, -0.778 ], "y_axis": [ 0.324, -0.886, 0.330 ], "z_axis": [ -0.838, -0.107, 0.535 ], "quaternion": [ -0.229, -0.478, 0.066, 0.846 ] } }, { "index": 2286, "index_chain": 2286, "chain_name": "A", "nt_resnum": 2497, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2497", "linked_nts": [ "///A/2496", "///A/2498" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop", "alpha": -99.745, "beta": 165.279, "gamma": 54.234, "delta": 92.319, "epsilon": -155.485, "zeta": -92.865, "epsilon_zeta": -62.621, "bb_type": "BI", "chi": -101.638, "glyco_bond": "anti", "C5prime_xyz": [ -1.622, 7.576, -2.528 ], "P_xyz": [ 0.810, 7.071, -3.414 ], "form": ".", "ssZp": 1.434, "Dp": 4.459, "splay_angle": 21.722, "splay_distance": 4.156, "splay_ratio": 0.235, "d22": null, "d64": null, "eta": 131.866, "theta": -154.083, "eta_prime": 147.127, "theta_prime": -157.234, "eta_base": 124.002, "theta_base": -120.572, "v0": 9.273, "v1": -24.685, "v2": 29.873, "v3": -25.389, "v4": 10.288, "amplitude": 29.878, "phase_angle": 1.072, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.012, "origin": [ 223.643, 145.423, 159.237 ], "x_axis": [ 0.481, 0.122, -0.868 ], "y_axis": [ 0.225, -0.974, -0.011 ], "z_axis": [ -0.847, -0.190, -0.496 ], "quaternion": [ 0.052, 0.859, 0.101, -0.499 ] } }, { "index": 2287, "index_chain": 2287, "chain_name": "A", "nt_resnum": 2498, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2498", "linked_nts": [ "///A/2497", null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "break,anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": -54.236, "beta": 149.374, "gamma": 55.429, "delta": 88.144, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -109.903, "glyco_bond": "anti", "C5prime_xyz": [ -1.354, 7.805, -2.211 ], "P_xyz": [ 0.805, 6.754, -3.293 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 11.368, "v1": -29.129, "v2": 34.937, "v3": -29.364, "v4": 11.440, "amplitude": 34.937, "phase_angle": 0.164, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.381, "filter_rmsd": 0.039, "frame": { "rmsd": 0.010, "origin": [ 222.436, 142.140, 156.994 ], "x_axis": [ 0.611, -0.333, -0.718 ], "y_axis": [ -0.251, -0.942, 0.223 ], "z_axis": [ -0.751, 0.044, -0.659 ], "quaternion": [ 0.050, 0.896, -0.163, -0.410 ] } }, { "index": 2288, "index_chain": 2288, "chain_name": "A", "nt_resnum": 2512, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2512", "linked_nts": [ null, "///A/2513" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-pair-contact,ss-non-loop", "alpha": null, "beta": -161.820, "gamma": -73.626, "delta": 82.527, "epsilon": -114.369, "zeta": -90.896, "epsilon_zeta": -23.473, "bb_type": "--", "chi": -35.404, "glyco_bond": "--", "C5prime_xyz": [ -3.929, 4.719, -3.118 ], "P_xyz": [ -5.102, 4.588, -5.450 ], "form": ".", "ssZp": -4.322, "Dp": 4.848, "splay_angle": 32.129, "splay_distance": 4.935, "splay_ratio": 0.318, "d22": null, "d64": null, "eta": null, "theta": -153.524, "eta_prime": null, "theta_prime": -149.556, "eta_base": null, "theta_base": -120.386, "v0": 8.732, "v1": -29.554, "v2": 38.141, "v3": -34.153, "v4": 16.085, "amplitude": 38.338, "phase_angle": 5.814, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.006, "origin": [ 219.462, 138.146, 151.579 ], "x_axis": [ 0.885, 0.454, 0.102 ], "y_axis": [ -0.247, 0.273, 0.930 ], "z_axis": [ 0.394, -0.848, 0.354 ], "quaternion": [ 0.793, 0.561, 0.092, 0.221 ] } }, { "index": 2289, "index_chain": 2289, "chain_name": "A", "nt_resnum": 2513, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2513", "linked_nts": [ "///A/2512", "///A/2514" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-pair-contact,ss-non-loop,phosphate", "alpha": -175.218, "beta": -178.714, "gamma": 159.090, "delta": 83.896, "epsilon": -172.468, "zeta": -82.058, "epsilon_zeta": -90.411, "bb_type": "BI", "chi": -1.918, "glyco_bond": "syn", "C5prime_xyz": [ -4.979, 3.747, -1.813 ], "P_xyz": [ -6.226, 1.558, -1.098 ], "form": ".", "ssZp": -4.329, "Dp": 4.431, "splay_angle": 37.579, "splay_distance": 5.468, "splay_ratio": 0.360, "d22": null, "d64": null, "eta": 154.373, "theta": -168.498, "eta_prime": 176.249, "theta_prime": -179.402, "eta_base": -165.665, "theta_base": 179.593, "v0": 4.715, "v1": -25.149, "v2": 34.809, "v3": -33.118, "v4": 17.918, "amplitude": 35.483, "phase_angle": 11.179, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 219.600, 142.781, 153.266 ], "x_axis": [ 0.864, 0.206, -0.459 ], "y_axis": [ 0.335, 0.445, 0.831 ], "z_axis": [ 0.375, -0.872, 0.315 ], "quaternion": [ 0.810, 0.525, 0.257, -0.040 ] } }, { "index": 2290, "index_chain": 2290, "chain_name": "A", "nt_resnum": 2514, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2514", "linked_nts": [ "///A/2513", "///A/2515" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop,phosphate", "alpha": 171.997, "beta": -168.291, "gamma": 155.480, "delta": 81.253, "epsilon": -153.927, "zeta": -57.910, "epsilon_zeta": -96.017, "bb_type": "BI", "chi": 18.208, "glyco_bond": "syn", "C5prime_xyz": [ -5.307, 3.421, -0.720 ], "P_xyz": [ -6.080, 1.452, 0.828 ], "form": ".", "ssZp": -4.518, "Dp": 4.608, "splay_angle": 37.309, "splay_distance": 5.531, "splay_ratio": 0.324, "d22": null, "d64": null, "eta": 154.036, "theta": -147.011, "eta_prime": 163.743, "theta_prime": -137.760, "eta_base": -172.354, "theta_base": 179.347, "v0": 3.417, "v1": -25.242, "v2": 36.275, "v3": -35.291, "v4": 20.082, "amplitude": 37.299, "phase_angle": 13.457, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.175, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 222.114, 147.314, 155.010 ], "x_axis": [ 0.795, -0.404, -0.453 ], "y_axis": [ 0.522, 0.074, 0.850 ], "z_axis": [ -0.310, -0.912, 0.269 ], "quaternion": [ 0.731, 0.603, 0.049, -0.316 ] } }, { "index": 2291, "index_chain": 2291, "chain_name": "A", "nt_resnum": 2515, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2515", "linked_nts": [ "///A/2514", "///A/2516" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -99.193, "beta": -146.288, "gamma": 74.516, "delta": 151.405, "epsilon": -147.664, "zeta": -103.600, "epsilon_zeta": -44.064, "bb_type": "BI", "chi": -131.147, "glyco_bond": "anti", "C5prime_xyz": [ -1.837, 8.613, -0.514 ], "P_xyz": [ 0.384, 8.940, 0.855 ], "form": ".", "ssZp": 1.842, "Dp": 1.832, "splay_angle": 25.516, "splay_distance": 4.160, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 169.991, "theta": -93.250, "eta_prime": -154.272, "theta_prime": -134.762, "eta_base": 175.254, "theta_base": -119.389, "v0": -18.476, "v1": 34.571, "v2": -36.491, "v3": 26.778, "v4": -5.388, "amplitude": 37.116, "phase_angle": 169.468, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.051, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 227.232, 148.889, 153.624 ], "x_axis": [ -0.858, -0.497, -0.130 ], "y_axis": [ -0.388, 0.461, 0.798 ], "z_axis": [ -0.336, 0.735, -0.589 ], "quaternion": [ -0.060, -0.260, 0.853, 0.449 ] } }, { "index": 2292, "index_chain": 2292, "chain_name": "A", "nt_resnum": 2516, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2516", "linked_nts": [ "///A/2515", "///A/2517" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop", "alpha": 167.438, "beta": 151.581, "gamma": 150.728, "delta": 82.972, "epsilon": 161.693, "zeta": 29.219, "epsilon_zeta": 132.474, "bb_type": "--", "chi": -101.591, "glyco_bond": "anti", "C5prime_xyz": [ -1.829, 7.655, -2.633 ], "P_xyz": [ -2.009, 7.269, -5.227 ], "form": ".", "ssZp": 1.887, "Dp": 4.205, "splay_angle": 17.291, "splay_distance": 2.976, "splay_ratio": 0.151, "d22": null, "d64": null, "eta": 144.211, "theta": -147.357, "eta_prime": 160.956, "theta_prime": -166.924, "eta_base": -164.026, "theta_base": 178.444, "v0": 7.715, "v1": -28.119, "v2": 36.704, "v3": -33.174, "v4": 16.138, "amplitude": 36.964, "phase_angle": 6.804, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 227.641, 152.195, 151.133 ], "x_axis": [ -0.946, 0.231, -0.225 ], "y_axis": [ 0.129, 0.911, 0.392 ], "z_axis": [ 0.296, 0.342, -0.892 ], "quaternion": [ 0.135, 0.093, 0.968, 0.190 ] } }, { "index": 2293, "index_chain": 2293, "chain_name": "A", "nt_resnum": 2517, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2517", "linked_nts": [ "///A/2516", "///A/2518" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate", "alpha": -167.603, "beta": 83.527, "gamma": 158.871, "delta": 80.689, "epsilon": 175.924, "zeta": 33.721, "epsilon_zeta": 142.203, "bb_type": "--", "chi": -127.503, "glyco_bond": "anti", "C5prime_xyz": [ -1.360, 8.490, -1.409 ], "P_xyz": [ -2.658, 8.884, -3.665 ], "form": ".", "ssZp": 3.273, "Dp": 4.347, "splay_angle": 38.665, "splay_distance": 6.339, "splay_ratio": 0.331, "d22": null, "d64": null, "eta": -177.359, "theta": -121.259, "eta_prime": 177.764, "theta_prime": -103.425, "eta_base": 176.332, "theta_base": -96.381, "v0": 2.805, "v1": -24.491, "v2": 35.651, "v3": -35.026, "v4": 20.380, "amplitude": 36.802, "phase_angle": 14.370, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 228.302, 152.997, 148.345 ], "x_axis": [ -0.978, 0.139, -0.159 ], "y_axis": [ 0.117, 0.983, 0.139 ], "z_axis": [ 0.175, 0.117, -0.978 ], "quaternion": [ 0.084, 0.064, 0.992, 0.064 ] } }, { "index": 2294, "index_chain": 2294, "chain_name": "A", "nt_resnum": 2518, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2518", "linked_nts": [ "///A/2517", "///A/2519" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate", "alpha": -168.533, "beta": -136.342, "gamma": 52.975, "delta": 150.843, "epsilon": -165.412, "zeta": -159.239, "epsilon_zeta": -6.173, "bb_type": "--", "chi": -80.826, "glyco_bond": "anti", "C5prime_xyz": [ -3.091, 7.186, -2.769 ], "P_xyz": [ -1.372, 9.151, -2.850 ], "form": "B", "ssZp": 1.659, "Dp": 1.839, "splay_angle": 23.711, "splay_distance": 3.820, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 109.776, "theta": -151.586, "eta_prime": 172.690, "theta_prime": -171.509, "eta_base": -158.850, "theta_base": -134.401, "v0": -21.893, "v1": 38.064, "v2": -38.782, "v3": 27.214, "v4": -3.621, "amplitude": 39.919, "phase_angle": 166.289, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.024, "frame": { "rmsd": 0.024, "origin": [ 223.443, 156.866, 147.084 ], "x_axis": [ 0.046, -0.290, 0.956 ], "y_axis": [ 0.712, 0.681, 0.172 ], "z_axis": [ -0.701, 0.672, 0.238 ], "quaternion": [ 0.701, -0.178, -0.591, -0.357 ] } }, { "index": 2295, "index_chain": 2295, "chain_name": "A", "nt_resnum": 2519, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2519", "linked_nts": [ "///A/2518", "///A/2520" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop,phosphate", "alpha": 160.228, "beta": -147.814, "gamma": 140.021, "delta": 80.177, "epsilon": -164.486, "zeta": -91.331, "epsilon_zeta": -73.155, "bb_type": "BI", "chi": -129.197, "glyco_bond": "anti", "C5prime_xyz": [ -1.589, 8.607, -1.299 ], "P_xyz": [ 0.074, 8.431, -3.321 ], "form": ".", "ssZp": 3.243, "Dp": 4.483, "splay_angle": 22.122, "splay_distance": 3.596, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 142.898, "theta": -172.718, "eta_prime": 147.139, "theta_prime": 178.639, "eta_base": -163.176, "theta_base": -172.542, "v0": 1.033, "v1": -23.307, "v2": 35.472, "v3": -35.793, "v4": 21.927, "amplitude": 37.093, "phase_angle": 17.002, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 221.030, 159.755, 147.733 ], "x_axis": [ 0.477, 0.169, 0.862 ], "y_axis": [ 0.439, 0.804, -0.400 ], "z_axis": [ -0.761, 0.570, 0.310 ], "quaternion": [ 0.805, -0.301, -0.504, -0.084 ] } }, { "index": 2296, "index_chain": 2296, "chain_name": "A", "nt_resnum": 2520, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2520", "linked_nts": [ "///A/2519", "///A/2521" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": -48.822, "beta": 152.689, "gamma": 57.055, "delta": 84.688, "epsilon": -95.944, "zeta": -169.777, "epsilon_zeta": 73.832, "bb_type": "BII", "chi": -135.181, "glyco_bond": "anti", "C5prime_xyz": [ -1.498, 8.598, -0.934 ], "P_xyz": [ 0.960, 8.493, -1.860 ], "form": ".", "ssZp": 2.599, "Dp": 4.658, "splay_angle": 124.850, "splay_distance": 14.248, "splay_ratio": 0.895, "d22": 11.782, "d64": 12.097, "eta": -170.002, "theta": 144.270, "eta_prime": -167.170, "theta_prime": 112.431, "eta_base": -154.897, "theta_base": 37.063, "v0": 3.380, "v1": -23.664, "v2": 33.803, "v3": -32.783, "v4": 18.619, "amplitude": 34.718, "phase_angle": 13.177, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.539, "filter_rmsd": 0.106, "frame": { "rmsd": 0.005, "origin": [ 218.074, 161.747, 148.210 ], "x_axis": [ 0.535, 0.404, 0.742 ], "y_axis": [ 0.155, 0.817, -0.556 ], "z_axis": [ -0.830, 0.412, 0.374 ], "quaternion": [ 0.826, -0.293, -0.476, 0.076 ] } }, { "index": 2297, "index_chain": 2297, "chain_name": "A", "nt_resnum": 2521, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2521", "linked_nts": [ "///A/2520", "///A/2522" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,BII,ss-non-loop,phosphate,splayed-apart", "alpha": 126.865, "beta": 134.776, "gamma": 39.812, "delta": 82.807, "epsilon": -104.333, "zeta": 149.738, "epsilon_zeta": 105.929, "bb_type": "BII", "chi": 65.690, "glyco_bond": "syn", "C5prime_xyz": [ -5.222, 4.401, 1.989 ], "P_xyz": [ -4.554, 2.079, 3.009 ], "form": ".", "ssZp": -1.336, "Dp": 4.394, "splay_angle": 128.321, "splay_distance": 17.535, "splay_ratio": 0.903, "d22": 10.254, "d64": 12.598, "eta": 27.043, "theta": 116.825, "eta_prime": 51.685, "theta_prime": 108.096, "eta_base": 130.162, "theta_base": 72.352, "v0": -4.084, "v1": -17.417, "v2": 30.907, "v3": -34.178, "v4": 24.133, "amplitude": 34.188, "phase_angle": 25.307, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.110, "frame": { "rmsd": 0.008, "origin": [ 219.547, 171.353, 137.792 ], "x_axis": [ 0.746, 0.609, -0.270 ], "y_axis": [ -0.512, 0.784, 0.351 ], "z_axis": [ 0.425, -0.124, 0.897 ], "quaternion": [ 0.926, 0.128, 0.188, 0.303 ] } }, { "index": 2298, "index_chain": 2298, "chain_name": "A", "nt_resnum": 2522, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2522", "linked_nts": [ "///A/2521", "///A/2523" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,ss-non-loop,splayed-apart", "alpha": 0.123, "beta": -141.438, "gamma": -86.805, "delta": 148.895, "epsilon": -143.746, "zeta": 113.708, "epsilon_zeta": 102.546, "bb_type": "--", "chi": -137.108, "glyco_bond": "anti", "C5prime_xyz": [ -1.919, 8.695, -0.288 ], "P_xyz": [ -1.761, 11.159, -1.166 ], "form": ".", "ssZp": 1.569, "Dp": 1.738, "splay_angle": 107.664, "splay_distance": 16.907, "splay_ratio": 0.809, "d22": null, "d64": null, "eta": -155.615, "theta": 58.680, "eta_prime": -168.664, "theta_prime": 70.035, "eta_base": -158.560, "theta_base": 84.394, "v0": -21.756, "v1": 36.665, "v2": -36.679, "v3": 25.088, "v4": -2.303, "amplitude": 38.040, "phase_angle": 164.630, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.004, "origin": [ 205.297, 176.858, 146.399 ], "x_axis": [ 0.238, 0.891, -0.386 ], "y_axis": [ 0.538, -0.452, -0.712 ], "z_axis": [ -0.809, -0.039, -0.586 ], "quaternion": [ -0.223, 0.754, 0.473, -0.396 ] } }, { "index": 2299, "index_chain": 2299, "chain_name": "A", "nt_resnum": 2523, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2523", "linked_nts": [ "///A/2522", "///A/2524" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 127.763, "beta": -172.663, "gamma": -159.851, "delta": 85.171, "epsilon": -178.620, "zeta": -67.725, "epsilon_zeta": -110.896, "bb_type": "BI", "chi": -169.200, "glyco_bond": "anti", "C5prime_xyz": [ -2.789, 8.902, 0.607 ], "P_xyz": [ -2.196, 11.152, -0.611 ], "form": ".", "ssZp": 3.014, "Dp": 3.441, "splay_angle": 18.119, "splay_distance": 3.059, "splay_ratio": 0.183, "d22": null, "d64": null, "eta": -151.970, "theta": 177.880, "eta_prime": -177.840, "theta_prime": -157.980, "eta_base": 160.863, "theta_base": -88.360, "v0": -20.211, "v1": -0.081, "v2": 18.654, "v3": -30.833, "v4": 32.131, "amplitude": 32.816, "phase_angle": 55.358, "puckering": "C4'-exo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 213.499, 162.437, 149.655 ], "x_axis": [ -0.021, 0.572, 0.820 ], "y_axis": [ -0.684, 0.589, -0.429 ], "z_axis": [ -0.729, -0.570, 0.379 ], "quaternion": [ 0.698, 0.050, -0.555, 0.450 ] } }, { "index": 2300, "index_chain": 2300, "chain_name": "A", "nt_resnum": 2524, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2524", "linked_nts": [ "///A/2523", "///A/2525" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -136.804, "beta": -105.064, "gamma": 59.993, "delta": 87.149, "epsilon": 154.101, "zeta": -81.956, "epsilon_zeta": -123.943, "bb_type": "BI", "chi": -83.115, "glyco_bond": "--", "C5prime_xyz": [ -1.991, 6.700, -3.211 ], "P_xyz": [ 0.632, 6.878, -3.054 ], "form": ".", "ssZp": 0.536, "Dp": 4.069, "splay_angle": 20.628, "splay_distance": 3.614, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 155.961, "theta": -148.772, "eta_prime": 172.571, "theta_prime": -154.789, "eta_base": -115.802, "theta_base": -164.888, "v0": 12.106, "v1": -29.188, "v2": 34.381, "v3": -28.365, "v4": 10.398, "amplitude": 34.391, "phase_angle": 358.630, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 210.469, 162.123, 149.942 ], "x_axis": [ -0.591, 0.804, 0.071 ], "y_axis": [ -0.646, -0.419, -0.638 ], "z_axis": [ -0.483, -0.423, 0.767 ], "quaternion": [ 0.435, -0.124, -0.318, 0.833 ] } }, { "index": 2301, "index_chain": 2301, "chain_name": "A", "nt_resnum": 2525, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2525", "linked_nts": [ "///A/2524", "///A/2526" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BI,non-pair-contact,ss-non-loop", "alpha": 166.069, "beta": -142.426, "gamma": 163.158, "delta": 146.032, "epsilon": -153.110, "zeta": -62.512, "epsilon_zeta": -90.598, "bb_type": "BI", "chi": -103.042, "glyco_bond": "anti", "C5prime_xyz": [ -2.148, 8.169, -2.017 ], "P_xyz": [ -0.306, 7.688, -3.819 ], "form": ".", "ssZp": 1.888, "Dp": 1.964, "splay_angle": 46.677, "splay_distance": 8.013, "splay_ratio": 0.397, "d22": null, "d64": null, "eta": 170.590, "theta": -74.378, "eta_prime": -154.527, "theta_prime": -140.709, "eta_base": -163.719, "theta_base": -122.265, "v0": -20.805, "v1": 34.584, "v2": -34.510, "v3": 23.361, "v4": -1.782, "amplitude": 35.882, "phase_angle": 164.105, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 208.735, 159.188, 151.142 ], "x_axis": [ -0.540, 0.840, -0.058 ], "y_axis": [ -0.708, -0.490, -0.508 ], "z_axis": [ -0.455, -0.233, 0.859 ], "quaternion": [ 0.455, -0.151, -0.218, 0.850 ] } }, { "index": 2302, "index_chain": 2302, "chain_name": "A", "nt_resnum": 2526, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2526", "linked_nts": [ "///A/2525", null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "break,anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": 157.693, "beta": 129.961, "gamma": 148.595, "delta": 81.838, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -146.276, "glyco_bond": "anti", "C5prime_xyz": [ -1.334, 8.676, -0.316 ], "P_xyz": [ -1.152, 9.890, -2.627 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 3.647, "v1": -25.405, "v2": 36.245, "v3": -35.204, "v4": 19.929, "amplitude": 37.223, "phase_angle": 13.159, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.036, "frame": { "rmsd": 0.005, "origin": [ 202.724, 157.372, 156.120 ], "x_axis": [ -0.417, 0.671, -0.613 ], "y_axis": [ -0.075, -0.697, -0.713 ], "z_axis": [ -0.906, -0.251, 0.342 ], "quaternion": [ 0.238, -0.484, -0.308, 0.784 ] } }, { "index": 2303, "index_chain": 2303, "chain_name": "A", "nt_resnum": 2536, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2536", "linked_nts": [ null, "///A/2537" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop", "alpha": null, "beta": 148.585, "gamma": 64.431, "delta": 81.456, "epsilon": -130.027, "zeta": -73.156, "epsilon_zeta": -56.871, "bb_type": "BI", "chi": -167.828, "glyco_bond": "anti", "C5prime_xyz": [ -1.303, 8.679, 1.000 ], "P_xyz": [ 1.281, 8.850, 0.586 ], "form": ".", "ssZp": 4.548, "Dp": 4.712, "splay_angle": 26.868, "splay_distance": 4.154, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": null, "theta": -128.428, "eta_prime": null, "theta_prime": -131.399, "eta_base": null, "theta_base": -86.400, "v0": 3.085, "v1": -25.003, "v2": 36.161, "v3": -35.371, "v4": 20.364, "amplitude": 37.260, "phase_angle": 13.951, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 200.705, 157.367, 191.819 ], "x_axis": [ -0.709, 0.087, 0.699 ], "y_axis": [ -0.704, -0.133, -0.698 ], "z_axis": [ 0.032, -0.987, 0.156 ], "quaternion": [ 0.280, 0.259, -0.596, 0.707 ] } }, { "index": 2304, "index_chain": 2304, "chain_name": "A", "nt_resnum": 2537, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2537", "linked_nts": [ "///A/2536", "///A/2538" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -71.989, "beta": 161.674, "gamma": 60.042, "delta": 83.028, "epsilon": -159.026, "zeta": -80.865, "epsilon_zeta": -78.162, "bb_type": "BI", "chi": -178.677, "glyco_bond": "anti", "C5prime_xyz": [ -1.359, 8.435, 1.621 ], "P_xyz": [ 1.249, 8.587, 1.889 ], "form": "A", "ssZp": 4.555, "Dp": 4.563, "splay_angle": 26.433, "splay_distance": 4.046, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": 152.787, "theta": -121.019, "eta_prime": 176.459, "theta_prime": -129.100, "eta_base": -110.884, "theta_base": -90.168, "v0": 3.919, "v1": -24.786, "v2": 35.038, "v3": -33.725, "v4": 18.818, "amplitude": 35.884, "phase_angle": 12.465, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.735, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 198.635, 154.418, 193.886 ], "x_axis": [ -0.945, 0.288, -0.154 ], "y_axis": [ 0.113, -0.154, -0.982 ], "z_axis": [ -0.306, -0.945, 0.113 ], "quaternion": [ 0.059, -0.155, -0.648, 0.744 ] } }, { "index": 2305, "index_chain": 2305, "chain_name": "A", "nt_resnum": 2538, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2538", "linked_nts": [ "///A/2537", "///A/2539" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": 174.467, "beta": -142.721, "gamma": 143.801, "delta": 81.843, "epsilon": -128.630, "zeta": -84.771, "epsilon_zeta": -43.858, "bb_type": "--", "chi": 168.130, "glyco_bond": "anti", "C5prime_xyz": [ -1.565, 8.100, 2.282 ], "P_xyz": [ 0.917, 8.822, 1.883 ], "form": "A", "ssZp": 4.667, "Dp": 4.731, "splay_angle": 26.547, "splay_distance": 3.974, "splay_ratio": 0.231, "d22": null, "d64": null, "eta": 154.077, "theta": -144.281, "eta_prime": 177.652, "theta_prime": -144.797, "eta_base": -114.995, "theta_base": -116.944, "v0": 3.480, "v1": -24.953, "v2": 35.733, "v3": -34.695, "v4": 19.678, "amplitude": 36.714, "phase_angle": 13.272, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 195.528, 151.981, 194.768 ], "x_axis": [ -0.535, 0.147, -0.832 ], "y_axis": [ 0.794, -0.250, -0.555 ], "z_axis": [ -0.290, -0.957, 0.017 ], "quaternion": [ -0.241, -0.418, -0.563, 0.671 ] } }, { "index": 2306, "index_chain": 2306, "chain_name": "A", "nt_resnum": 2539, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2539", "linked_nts": [ "///A/2538", "///A/2540" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,ss-non-loop", "alpha": -69.329, "beta": 176.707, "gamma": 56.901, "delta": 86.290, "epsilon": -156.468, "zeta": -60.581, "epsilon_zeta": -95.886, "bb_type": "BI", "chi": -172.269, "glyco_bond": "anti", "C5prime_xyz": [ -1.162, 8.517, 1.305 ], "P_xyz": [ 1.370, 8.489, 2.001 ], "form": "A", "ssZp": 4.441, "Dp": 4.503, "splay_angle": 20.812, "splay_distance": 3.230, "splay_ratio": 0.181, "d22": 4.296, "d64": 3.727, "eta": 167.300, "theta": -132.867, "eta_prime": -178.767, "theta_prime": -132.766, "eta_base": -134.641, "theta_base": -100.339, "v0": 4.259, "v1": -23.740, "v2": 33.051, "v3": -31.519, "v4": 17.244, "amplitude": 33.732, "phase_angle": 11.537, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.681, "filter_rmsd": 0.067, "frame": { "rmsd": 0.008, "origin": [ 192.783, 149.145, 195.221 ], "x_axis": [ 0.175, 0.078, -0.981 ], "y_axis": [ 0.965, -0.212, 0.156 ], "z_axis": [ -0.196, -0.974, -0.112 ], "quaternion": [ 0.461, 0.612, 0.426, -0.481 ] } }, { "index": 2307, "index_chain": 2307, "chain_name": "A", "nt_resnum": 2540, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2540", "linked_nts": [ "///A/2539", "///A/2541" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": -85.610, "beta": -167.483, "gamma": 54.411, "delta": 86.673, "epsilon": -91.573, "zeta": -151.267, "epsilon_zeta": 59.694, "bb_type": "--", "chi": -155.916, "glyco_bond": "anti", "C5prime_xyz": [ -1.226, 8.658, 0.346 ], "P_xyz": [ 1.308, 8.889, 1.013 ], "form": "B", "ssZp": 3.694, "Dp": 4.593, "splay_angle": 24.062, "splay_distance": 3.998, "splay_ratio": 0.212, "d22": 4.504, "d64": 4.242, "eta": -179.673, "theta": -129.247, "eta_prime": -168.524, "theta_prime": -128.319, "eta_base": -126.831, "theta_base": -106.371, "v0": 4.247, "v1": -23.642, "v2": 32.979, "v3": -31.466, "v4": 17.220, "amplitude": 33.664, "phase_angle": 11.580, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.529, "filter_rmsd": 0.107, "frame": { "rmsd": 0.006, "origin": [ 191.452, 146.576, 193.784 ], "x_axis": [ 0.792, 0.026, -0.610 ], "y_axis": [ 0.591, -0.282, 0.755 ], "z_axis": [ -0.153, -0.959, -0.239 ], "quaternion": [ 0.564, 0.760, 0.203, -0.251 ] } }, { "index": 2308, "index_chain": 2308, "chain_name": "A", "nt_resnum": 2541, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2541", "linked_nts": [ "///A/2540", "///A/2542" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate", "alpha": 95.609, "beta": -89.998, "gamma": 176.497, "delta": 83.202, "epsilon": -129.419, "zeta": -87.510, "epsilon_zeta": -41.909, "bb_type": "--", "chi": -167.046, "glyco_bond": "anti", "C5prime_xyz": [ -1.343, 8.711, 0.939 ], "P_xyz": [ -0.059, 8.973, -1.324 ], "form": ".", "ssZp": 4.455, "Dp": 4.631, "splay_angle": 26.081, "splay_distance": 5.021, "splay_ratio": 0.246, "d22": null, "d64": null, "eta": 155.876, "theta": -128.553, "eta_prime": 179.802, "theta_prime": -155.022, "eta_base": -146.415, "theta_base": -160.248, "v0": 0.320, "v1": -21.613, "v2": 33.480, "v3": -34.235, "v4": 21.398, "amplitude": 35.225, "phase_angle": 18.111, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 191.628, 142.763, 192.594 ], "x_axis": [ 0.965, 0.045, -0.259 ], "y_axis": [ 0.256, -0.386, 0.886 ], "z_axis": [ -0.060, -0.921, -0.384 ], "quaternion": [ 0.546, 0.827, 0.091, -0.097 ] } }, { "index": 2309, "index_chain": 2309, "chain_name": "A", "nt_resnum": 2542, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2542", "linked_nts": [ "///A/2541", "///A/2543" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end", "alpha": 82.058, "beta": -150.951, "gamma": -113.472, "delta": 84.151, "epsilon": -91.306, "zeta": -125.034, "epsilon_zeta": 33.728, "bb_type": "--", "chi": -176.894, "glyco_bond": "anti", "C5prime_xyz": [ -1.480, 8.505, 1.530 ], "P_xyz": [ -1.064, 11.089, 1.441 ], "form": ".", "ssZp": 4.302, "Dp": 4.510, "splay_angle": 24.018, "splay_distance": 4.144, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": 171.693, "theta": -167.832, "eta_prime": 176.302, "theta_prime": -162.848, "eta_base": -170.227, "theta_base": -137.487, "v0": 1.131, "v1": -22.023, "v2": 33.328, "v3": -33.619, "v4": 20.515, "amplitude": 34.815, "phase_angle": 16.806, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.046, "frame": { "rmsd": 0.013, "origin": [ 190.675, 140.595, 188.167 ], "x_axis": [ 0.962, 0.264, 0.064 ], "y_axis": [ 0.019, -0.301, 0.954 ], "z_axis": [ 0.271, -0.916, -0.295 ], "quaternion": [ 0.585, 0.800, 0.089, 0.105 ] } }, { "index": 2310, "index_chain": 2310, "chain_name": "A", "nt_resnum": 2543, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2543", "linked_nts": [ "///A/2542", "///A/2544" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": 81.178, "beta": -96.922, "gamma": -150.620, "delta": 83.068, "epsilon": -101.681, "zeta": -108.549, "epsilon_zeta": 6.868, "bb_type": "--", "chi": 170.741, "glyco_bond": "anti", "C5prime_xyz": [ -1.722, 8.247, 2.114 ], "P_xyz": [ -0.686, 10.131, 0.621 ], "form": ".", "ssZp": 4.469, "Dp": 4.549, "splay_angle": 25.099, "splay_distance": 3.892, "splay_ratio": 0.219, "d22": 4.946, "d64": 4.411, "eta": 178.132, "theta": 175.280, "eta_prime": -171.994, "theta_prime": -171.150, "eta_base": -143.011, "theta_base": -131.799, "v0": -0.217, "v1": -21.176, "v2": 33.305, "v3": -34.314, "v4": 21.823, "amplitude": 35.211, "phase_angle": 18.942, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.110, "frame": { "rmsd": 0.011, "origin": [ 192.072, 137.779, 185.466 ], "x_axis": [ 0.905, 0.175, 0.387 ], "y_axis": [ -0.306, -0.363, 0.880 ], "z_axis": [ 0.294, -0.915, -0.275 ], "quaternion": [ 0.563, 0.797, -0.041, 0.214 ] } }, { "index": 2311, "index_chain": 2311, "chain_name": "A", "nt_resnum": 2544, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2544", "linked_nts": [ "///A/2543", "///A/2545" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor", "alpha": -56.594, "beta": 139.732, "gamma": 58.018, "delta": 84.746, "epsilon": -156.135, "zeta": -73.708, "epsilon_zeta": -82.427, "bb_type": "BI", "chi": -167.976, "glyco_bond": "anti", "C5prime_xyz": [ -1.313, 8.672, 1.011 ], "P_xyz": [ 1.295, 8.562, 0.809 ], "form": "A", "ssZp": 4.384, "Dp": 4.467, "splay_angle": 24.587, "splay_distance": 3.913, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 156.951, "theta": -141.166, "eta_prime": 177.510, "theta_prime": -148.529, "eta_base": -134.038, "theta_base": -134.611, "v0": 1.394, "v1": -21.930, "v2": 32.896, "v3": -33.028, "v4": 19.991, "amplitude": 34.282, "phase_angle": 16.346, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.707, "filter_rmsd": 0.067, "frame": { "rmsd": 0.006, "origin": [ 193.616, 134.582, 183.871 ], "x_axis": [ 0.491, -0.056, 0.869 ], "y_axis": [ -0.816, -0.380, 0.436 ], "z_axis": [ 0.306, -0.923, -0.233 ], "quaternion": [ 0.469, 0.725, -0.300, 0.405 ] } }, { "index": 2312, "index_chain": 2312, "chain_name": "A", "nt_resnum": 2545, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2545", "linked_nts": [ "///A/2544", "///A/2546" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,A-minor", "alpha": -65.081, "beta": 175.332, "gamma": 53.837, "delta": 83.226, "epsilon": -99.350, "zeta": -105.688, "epsilon_zeta": 6.339, "bb_type": "--", "chi": -171.552, "glyco_bond": "anti", "C5prime_xyz": [ -1.461, 8.733, 1.199 ], "P_xyz": [ 0.978, 9.051, 2.117 ], "form": ".", "ssZp": 4.213, "Dp": 4.485, "splay_angle": 21.421, "splay_distance": 3.893, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": -175.215, "theta": -112.518, "eta_prime": -168.469, "theta_prime": -120.091, "eta_base": -142.802, "theta_base": -101.766, "v0": -1.127, "v1": -20.339, "v2": 32.804, "v3": -34.340, "v4": 22.412, "amplitude": 34.998, "phase_angle": 20.397, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.931, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 195.992, 132.103, 181.994 ], "x_axis": [ -0.003, -0.076, 0.997 ], "y_axis": [ -0.979, -0.202, -0.018 ], "z_axis": [ 0.203, -0.976, -0.074 ], "quaternion": [ 0.425, 0.564, -0.467, 0.532 ] } }, { "index": 2313, "index_chain": 2313, "chain_name": "A", "nt_resnum": 2546, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2546", "linked_nts": [ "///A/2545", "///A/2547" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart", "alpha": 76.137, "beta": -105.286, "gamma": -132.850, "delta": 83.835, "epsilon": 170.244, "zeta": -88.826, "epsilon_zeta": -100.930, "bb_type": "BI", "chi": 177.476, "glyco_bond": "anti", "C5prime_xyz": [ -1.357, 8.445, 1.800 ], "P_xyz": [ -0.720, 10.599, 0.462 ], "form": ".", "ssZp": 3.741, "Dp": 4.058, "splay_angle": 100.040, "splay_distance": 12.494, "splay_ratio": 0.767, "d22": null, "d64": null, "eta": -162.711, "theta": 132.190, "eta_prime": -160.724, "theta_prime": 134.139, "eta_base": -123.175, "theta_base": 70.065, "v0": -0.922, "v1": -19.814, "v2": 31.775, "v3": -33.208, "v4": 21.593, "amplitude": 33.849, "phase_angle": 20.163, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.068, "frame": { "rmsd": 0.010, "origin": [ 198.214, 129.067, 182.996 ], "x_axis": [ -0.387, -0.103, 0.916 ], "y_axis": [ -0.896, -0.193, -0.400 ], "z_axis": [ 0.218, -0.976, -0.017 ], "quaternion": [ 0.317, 0.454, -0.550, 0.625 ] } }, { "index": 2314, "index_chain": 2314, "chain_name": "A", "nt_resnum": 2547, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2547", "linked_nts": [ "///A/2546", "///A/2548" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": -150.504, "beta": -128.950, "gamma": 17.463, "delta": 147.045, "epsilon": -84.315, "zeta": -78.867, "epsilon_zeta": -5.447, "bb_type": "--", "chi": 50.835, "glyco_bond": "syn", "C5prime_xyz": [ -5.438, 3.759, 0.769 ], "P_xyz": [ -7.064, 2.622, -0.947 ], "form": ".", "ssZp": -0.468, "Dp": 0.484, "splay_angle": 106.890, "splay_distance": 15.980, "splay_ratio": 0.803, "d22": null, "d64": null, "eta": 109.053, "theta": -54.545, "eta_prime": 107.581, "theta_prime": -64.366, "eta_base": 65.517, "theta_base": -31.353, "v0": -22.623, "v1": 36.887, "v2": -36.180, "v3": 24.100, "v4": -1.156, "amplitude": 37.853, "phase_angle": 162.901, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.004, "origin": [ 193.178, 130.572, 171.661 ], "x_axis": [ 0.002, 0.909, -0.417 ], "y_axis": [ 0.978, 0.085, 0.189 ], "z_axis": [ 0.207, -0.408, -0.889 ], "quaternion": [ 0.222, 0.672, 0.702, -0.078 ] } }, { "index": 2315, "index_chain": 2315, "chain_name": "A", "nt_resnum": 2548, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2548", "linked_nts": [ "///A/2547", "///A/2549" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,junction-loop,splayed-apart", "alpha": -71.894, "beta": -131.716, "gamma": 52.981, "delta": 145.638, "epsilon": -104.545, "zeta": -174.638, "epsilon_zeta": 70.093, "bb_type": "BII", "chi": -112.581, "glyco_bond": "anti", "C5prime_xyz": [ -2.201, 8.375, -1.616 ], "P_xyz": [ -0.404, 9.867, -0.428 ], "form": ".", "ssZp": 1.013, "Dp": 1.048, "splay_angle": 44.331, "splay_distance": 7.290, "splay_ratio": 0.381, "d22": 7.506, "d64": 7.295, "eta": -165.580, "theta": 170.627, "eta_prime": -123.054, "theta_prime": 153.003, "eta_base": -149.311, "theta_base": 135.098, "v0": -23.336, "v1": 36.670, "v2": -35.219, "v3": 22.664, "v4": 0.241, "amplitude": 37.276, "phase_angle": 160.877, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.719, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 197.221, 121.651, 184.288 ], "x_axis": [ -0.806, -0.343, -0.483 ], "y_axis": [ 0.353, 0.378, -0.856 ], "z_axis": [ 0.476, -0.860, -0.184 ], "quaternion": [ 0.312, 0.003, 0.769, -0.557 ] } }, { "index": 2316, "index_chain": 2316, "chain_name": "A", "nt_resnum": 2549, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2549", "linked_nts": [ "///A/2548", "///A/2550" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,ribose-zipper", "alpha": -151.581, "beta": 151.313, "gamma": 36.783, "delta": 82.737, "epsilon": -151.228, "zeta": -73.402, "epsilon_zeta": -77.826, "bb_type": "BI", "chi": -173.607, "glyco_bond": "anti", "C5prime_xyz": [ -1.579, 8.663, 1.307 ], "P_xyz": [ 0.870, 8.731, 2.248 ], "form": "A", "ssZp": 4.390, "Dp": 4.465, "splay_angle": 22.769, "splay_distance": 3.654, "splay_ratio": 0.200, "d22": 4.715, "d64": 4.634, "eta": 108.936, "theta": -142.191, "eta_prime": 99.596, "theta_prime": -142.298, "eta_base": 101.594, "theta_base": -121.773, "v0": -1.273, "v1": -20.296, "v2": 32.863, "v3": -34.550, "v4": 22.563, "amplitude": 35.117, "phase_angle": 20.637, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4g", "suiteness": 0.545, "filter_rmsd": 0.065, "frame": { "rmsd": 0.007, "origin": [ 201.182, 126.503, 188.016 ], "x_axis": [ -0.831, 0.117, -0.545 ], "y_axis": [ 0.557, 0.169, -0.813 ], "z_axis": [ -0.003, -0.979, -0.205 ], "quaternion": [ 0.182, 0.227, 0.742, -0.604 ] } }, { "index": 2317, "index_chain": 2317, "chain_name": "A", "nt_resnum": 2550, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2550", "linked_nts": [ "///A/2549", "///A/2551" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper", "alpha": -64.928, "beta": -177.959, "gamma": 45.727, "delta": 81.549, "epsilon": -148.019, "zeta": -72.645, "epsilon_zeta": -75.374, "bb_type": "BI", "chi": -160.085, "glyco_bond": "anti", "C5prime_xyz": [ -1.323, 8.791, 0.538 ], "P_xyz": [ 1.161, 9.280, 1.219 ], "form": "A", "ssZp": 4.375, "Dp": 4.589, "splay_angle": 24.006, "splay_distance": 3.763, "splay_ratio": 0.208, "d22": 4.088, "d64": 4.045, "eta": 167.632, "theta": -145.350, "eta_prime": 177.693, "theta_prime": -141.030, "eta_base": -148.399, "theta_base": -102.438, "v0": 0.963, "v1": -22.927, "v2": 34.934, "v3": -35.335, "v4": 21.690, "amplitude": 36.556, "phase_angle": 17.128, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.869, "filter_rmsd": 0.063, "frame": { "rmsd": 0.004, "origin": [ 200.148, 123.113, 188.903 ], "x_axis": [ -0.400, 0.232, -0.887 ], "y_axis": [ 0.916, 0.071, -0.394 ], "z_axis": [ -0.029, -0.970, -0.241 ], "quaternion": [ 0.328, 0.439, 0.654, -0.522 ] } }, { "index": 2318, "index_chain": 2318, "chain_name": "A", "nt_resnum": 2551, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2551", "linked_nts": [ "///A/2550", "///A/2552" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -63.492, "beta": 163.651, "gamma": 59.030, "delta": 81.835, "epsilon": -131.658, "zeta": -60.275, "epsilon_zeta": -71.382, "bb_type": "BI", "chi": -162.003, "glyco_bond": "anti", "C5prime_xyz": [ -1.334, 8.648, 0.651 ], "P_xyz": [ 1.263, 8.934, 0.439 ], "form": ".", "ssZp": 4.440, "Dp": 4.733, "splay_angle": 43.236, "splay_distance": 6.856, "splay_ratio": 0.370, "d22": null, "d64": null, "eta": 170.074, "theta": -119.443, "eta_prime": -173.659, "theta_prime": -119.375, "eta_base": -122.110, "theta_base": -92.995, "v0": 4.100, "v1": -25.906, "v2": 36.650, "v3": -35.286, "v4": 19.678, "amplitude": 37.537, "phase_angle": 12.477, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.911, "filter_rmsd": 0.104, "frame": { "rmsd": 0.005, "origin": [ 199.047, 120.139, 186.876 ], "x_axis": [ 0.246, 0.233, -0.941 ], "y_axis": [ 0.965, -0.145, 0.217 ], "z_axis": [ -0.086, -0.962, -0.261 ], "quaternion": [ 0.458, 0.643, 0.466, -0.399 ] } }, { "index": 2319, "index_chain": 2319, "chain_name": "A", "nt_resnum": 2552, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2552", "linked_nts": [ "///A/2551", "///A/2553" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor", "alpha": -67.727, "beta": -153.550, "gamma": 33.530, "delta": 80.751, "epsilon": -155.625, "zeta": -74.021, "epsilon_zeta": -81.604, "bb_type": "BI", "chi": -165.605, "glyco_bond": "anti", "C5prime_xyz": [ -1.356, 8.666, 0.848 ], "P_xyz": [ 0.721, 9.263, 2.331 ], "form": "A", "ssZp": 4.533, "Dp": 4.607, "splay_angle": 24.375, "splay_distance": 3.752, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 162.833, "theta": -159.990, "eta_prime": 177.501, "theta_prime": -153.200, "eta_base": -139.371, "theta_base": -121.856, "v0": 3.523, "v1": -25.470, "v2": 36.522, "v3": -35.515, "v4": 20.173, "amplitude": 37.538, "phase_angle": 13.360, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.183, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 200.116, 115.771, 181.701 ], "x_axis": [ 0.667, 0.721, -0.190 ], "y_axis": [ 0.323, -0.050, 0.945 ], "z_axis": [ 0.671, -0.692, -0.266 ], "quaternion": [ 0.581, 0.704, 0.370, 0.171 ] } }, { "index": 2320, "index_chain": 2320, "chain_name": "A", "nt_resnum": 2553, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2553", "linked_nts": [ "///A/2552", "///A/2554" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor", "alpha": -61.550, "beta": 174.626, "gamma": 49.926, "delta": 79.494, "epsilon": -151.827, "zeta": -28.644, "epsilon_zeta": -123.183, "bb_type": "BI", "chi": -173.799, "glyco_bond": "anti", "C5prime_xyz": [ -1.225, 8.534, 1.323 ], "P_xyz": [ 1.314, 8.731, 1.925 ], "form": ".", "ssZp": 4.647, "Dp": 4.663, "splay_angle": 21.813, "splay_distance": 4.456, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": 167.726, "theta": -112.298, "eta_prime": 178.329, "theta_prime": -125.830, "eta_base": -141.993, "theta_base": -121.100, "v0": 4.953, "v1": -27.322, "v2": 38.167, "v3": -36.358, "v4": 19.803, "amplitude": 38.948, "phase_angle": 11.494, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.939, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 202.140, 113.798, 179.234 ], "x_axis": [ 0.623, 0.687, 0.375 ], "y_axis": [ -0.126, -0.385, 0.914 ], "z_axis": [ 0.772, -0.617, -0.153 ], "quaternion": [ 0.521, 0.735, 0.191, 0.390 ] } }, { "index": 2321, "index_chain": 2321, "chain_name": "A", "nt_resnum": 2554, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2554", "linked_nts": [ "///A/2553", "///A/2555" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -160.611, "beta": 130.027, "gamma": 169.478, "delta": 82.827, "epsilon": -157.180, "zeta": -116.693, "epsilon_zeta": -40.487, "bb_type": "BI", "chi": -179.574, "glyco_bond": "anti", "C5prime_xyz": [ -1.465, 8.497, 1.660 ], "P_xyz": [ -0.906, 10.903, 0.782 ], "form": "A", "ssZp": 4.402, "Dp": 4.469, "splay_angle": 26.640, "splay_distance": 4.152, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 179.379, "theta": 166.033, "eta_prime": -171.218, "theta_prime": -177.551, "eta_base": -145.643, "theta_base": -151.124, "v0": 0.507, "v1": -21.534, "v2": 33.196, "v3": -33.869, "v4": 21.044, "amplitude": 34.872, "phase_angle": 17.835, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.117, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 205.237, 114.592, 176.130 ], "x_axis": [ 0.484, 0.555, 0.676 ], "y_axis": [ -0.223, -0.669, 0.709 ], "z_axis": [ 0.846, -0.494, -0.199 ], "quaternion": [ 0.392, 0.767, 0.108, 0.496 ] } }, { "index": 2322, "index_chain": 2322, "chain_name": "A", "nt_resnum": 2555, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2555", "linked_nts": [ "///A/2554", "///A/2556" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 162.996, "beta": -112.141, "gamma": 158.658, "delta": 82.500, "epsilon": -99.575, "zeta": -94.400, "epsilon_zeta": -5.175, "bb_type": "--", "chi": 168.655, "glyco_bond": "anti", "C5prime_xyz": [ -2.308, 8.427, 2.031 ], "P_xyz": [ 0.160, 9.097, 1.502 ], "form": ".", "ssZp": 4.034, "Dp": 4.194, "splay_angle": 20.167, "splay_distance": 3.634, "splay_ratio": 0.183, "d22": null, "d64": null, "eta": -178.815, "theta": -104.893, "eta_prime": -168.991, "theta_prime": -125.643, "eta_base": -143.890, "theta_base": -87.758, "v0": -8.479, "v1": -13.608, "v2": 29.015, "v3": -34.754, "v4": 27.265, "amplitude": 34.403, "phase_angle": 32.500, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 208.468, 114.137, 173.562 ], "x_axis": [ 0.264, 0.259, 0.929 ], "y_axis": [ -0.461, -0.812, 0.358 ], "z_axis": [ 0.847, -0.523, -0.095 ], "quaternion": [ 0.299, 0.737, -0.068, 0.603 ] } }, { "index": 2323, "index_chain": 2323, "chain_name": "A", "nt_resnum": 2556, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2556", "linked_nts": [ "///A/2555", "///A/2557" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": 88.570, "beta": -134.092, "gamma": -152.237, "delta": 81.495, "epsilon": -161.226, "zeta": -70.796, "epsilon_zeta": -90.429, "bb_type": "BI", "chi": -176.583, "glyco_bond": "anti", "C5prime_xyz": [ -1.232, 8.466, 1.511 ], "P_xyz": [ -0.171, 10.470, 0.207 ], "form": ".", "ssZp": 4.563, "Dp": 4.569, "splay_angle": 30.101, "splay_distance": 4.410, "splay_ratio": 0.260, "d22": 3.888, "d64": 3.562, "eta": 139.678, "theta": -157.652, "eta_prime": 162.491, "theta_prime": -151.833, "eta_base": -127.664, "theta_base": -92.817, "v0": 4.359, "v1": -26.089, "v2": 36.790, "v3": -35.243, "v4": 19.502, "amplitude": 37.627, "phase_angle": 12.111, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 211.810, 113.767, 174.940 ], "x_axis": [ -0.173, -0.319, 0.932 ], "y_axis": [ -0.443, -0.820, -0.363 ], "z_axis": [ 0.880, -0.475, 0.001 ], "quaternion": [ 0.044, 0.641, -0.297, 0.706 ] } }, { "index": 2324, "index_chain": 2324, "chain_name": "A", "nt_resnum": 2557, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2557", "linked_nts": [ "///A/2556", "///A/2558" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": -166.939, "beta": -136.557, "gamma": 116.495, "delta": 79.352, "epsilon": -110.429, "zeta": -147.184, "epsilon_zeta": 36.754, "bb_type": "--", "chi": -176.790, "glyco_bond": "anti", "C5prime_xyz": [ -1.305, 8.407, 1.518 ], "P_xyz": [ 1.277, 8.396, 1.056 ], "form": ".", "ssZp": 4.720, "Dp": 4.819, "splay_angle": 136.504, "splay_distance": 15.666, "splay_ratio": 0.929, "d22": null, "d64": null, "eta": 155.902, "theta": 172.264, "eta_prime": 178.701, "theta_prime": 144.348, "eta_base": -106.895, "theta_base": 83.917, "v0": 5.567, "v1": -28.093, "v2": 38.834, "v3": -36.626, "v4": 19.561, "amplitude": 39.518, "phase_angle": 10.674, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.004, "origin": [ 213.975, 110.799, 177.379 ], "x_axis": [ -0.513, -0.840, 0.175 ], "y_axis": [ -0.056, -0.171, -0.984 ], "z_axis": [ 0.856, -0.515, 0.040 ], "quaternion": [ -0.298, 0.393, -0.571, 0.657 ] } }, { "index": 2325, "index_chain": 2325, "chain_name": "A", "nt_resnum": 2558, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2558", "linked_nts": [ "///A/2557", "///A/2559" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -59.205, "beta": 124.551, "gamma": -65.195, "delta": 147.717, "epsilon": -131.844, "zeta": 51.049, "epsilon_zeta": 177.107, "bb_type": "--", "chi": 57.079, "glyco_bond": "syn", "C5prime_xyz": [ -5.368, 3.960, 1.040 ], "P_xyz": [ -7.521, 3.118, -0.201 ], "form": ".", "ssZp": -1.550, "Dp": 1.561, "splay_angle": 107.387, "splay_distance": 16.437, "splay_ratio": 0.806, "d22": null, "d64": null, "eta": 66.527, "theta": 52.740, "eta_prime": 58.535, "theta_prime": 4.564, "eta_base": 52.825, "theta_base": -19.711, "v0": -21.452, "v1": 36.015, "v2": -36.000, "v3": 24.557, "v4": -2.148, "amplitude": 37.361, "phase_angle": 164.483, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 220.669, 113.414, 163.458 ], "x_axis": [ 0.342, 0.735, -0.585 ], "y_axis": [ 0.351, 0.478, 0.806 ], "z_axis": [ 0.872, -0.481, -0.095 ], "quaternion": [ 0.657, 0.490, 0.555, 0.146 ] } }, { "index": 2326, "index_chain": 2326, "chain_name": "A", "nt_resnum": 2559, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2559", "linked_nts": [ "///A/2558", "///A/2560" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 97.663, "beta": 99.953, "gamma": 148.844, "delta": 81.549, "epsilon": -130.207, "zeta": -83.919, "epsilon_zeta": -46.288, "bb_type": "BI", "chi": -171.876, "glyco_bond": "anti", "C5prime_xyz": [ -1.329, 8.529, 1.245 ], "P_xyz": [ -1.105, 10.319, -0.666 ], "form": ".", "ssZp": 4.673, "Dp": 4.750, "splay_angle": 115.062, "splay_distance": 14.299, "splay_ratio": 0.844, "d22": null, "d64": null, "eta": 48.465, "theta": -152.443, "eta_prime": 82.233, "theta_prime": -172.285, "eta_base": 117.461, "theta_base": 149.157, "v0": 4.182, "v1": -25.925, "v2": 36.576, "v3": -35.144, "v4": 19.540, "amplitude": 37.438, "phase_angle": 12.316, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.004, "origin": [ 214.013, 105.870, 176.457 ], "x_axis": [ -0.142, -0.382, -0.913 ], "y_axis": [ 0.628, 0.679, -0.381 ], "z_axis": [ 0.765, -0.628, 0.143 ], "quaternion": [ 0.648, 0.095, 0.648, -0.389 ] } }, { "index": 2327, "index_chain": 2327, "chain_name": "A", "nt_resnum": 2560, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2560", "linked_nts": [ "///A/2559", "///A/2561" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-acceptor,splayed-apart", "alpha": 90.716, "beta": 155.917, "gamma": 59.774, "delta": 82.947, "epsilon": -153.783, "zeta": -75.341, "epsilon_zeta": -78.442, "bb_type": "BI", "chi": 166.556, "glyco_bond": "--", "C5prime_xyz": [ -1.220, 7.790, 2.361 ], "P_xyz": [ 1.397, 7.634, 2.583 ], "form": "A", "ssZp": 4.525, "Dp": 4.696, "splay_angle": 27.851, "splay_distance": 3.890, "splay_ratio": 0.243, "d22": null, "d64": null, "eta": -62.183, "theta": -119.664, "eta_prime": -28.999, "theta_prime": -118.436, "eta_base": -12.596, "theta_base": -81.888, "v0": 10.165, "v1": -30.510, "v2": 38.202, "v3": -33.349, "v4": 14.698, "amplitude": 38.277, "phase_angle": 3.588, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7d", "suiteness": 0.471, "filter_rmsd": 0.041, "frame": { "rmsd": 0.012, "origin": [ 225.956, 106.685, 184.278 ], "x_axis": [ 0.613, 0.725, -0.314 ], "y_axis": [ -0.355, -0.102, -0.929 ], "z_axis": [ -0.706, 0.681, 0.196 ], "quaternion": [ 0.653, -0.616, -0.150, 0.414 ] } }, { "index": 2328, "index_chain": 2328, "chain_name": "A", "nt_resnum": 2561, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2561", "linked_nts": [ "///A/2560", "///A/2562" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": -134.604, "beta": -116.433, "gamma": 80.474, "delta": 85.807, "epsilon": -152.603, "zeta": -54.849, "epsilon_zeta": -97.755, "bb_type": "BI", "chi": -169.597, "glyco_bond": "anti", "C5prime_xyz": [ -1.280, 8.641, 1.124 ], "P_xyz": [ 0.984, 7.919, 2.256 ], "form": ".", "ssZp": 4.394, "Dp": 4.479, "splay_angle": 22.264, "splay_distance": 3.472, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 160.899, "theta": -113.641, "eta_prime": 173.238, "theta_prime": -114.423, "eta_base": -132.120, "theta_base": -65.464, "v0": 1.685, "v1": -21.623, "v2": 32.129, "v3": -32.066, "v4": 19.188, "amplitude": 33.387, "phase_angle": 15.781, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 225.241, 110.444, 184.977 ], "x_axis": [ 0.332, -0.058, -0.942 ], "y_axis": [ -0.688, -0.698, -0.199 ], "z_axis": [ -0.646, 0.714, -0.272 ], "quaternion": [ -0.301, 0.759, -0.246, -0.523 ] } }, { "index": 2329, "index_chain": 2329, "chain_name": "A", "nt_resnum": 2562, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2562", "linked_nts": [ "///A/2561", "///A/2563" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": -86.804, "beta": -171.741, "gamma": 54.470, "delta": 87.912, "epsilon": -121.239, "zeta": -106.555, "epsilon_zeta": -14.683, "bb_type": "--", "chi": -148.270, "glyco_bond": "anti", "C5prime_xyz": [ -1.273, 8.665, -0.113 ], "P_xyz": [ 1.315, 8.931, 0.282 ], "form": ".", "ssZp": 3.738, "Dp": 4.624, "splay_angle": 23.137, "splay_distance": 3.824, "splay_ratio": 0.211, "d22": 4.452, "d64": 3.738, "eta": 165.394, "theta": -144.032, "eta_prime": -174.868, "theta_prime": -137.273, "eta_base": -106.423, "theta_base": -92.636, "v0": 3.867, "v1": -22.997, "v2": 32.303, "v3": -30.918, "v4": 17.126, "amplitude": 33.028, "phase_angle": 12.027, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.477, "filter_rmsd": 0.107, "frame": { "rmsd": 0.005, "origin": [ 224.079, 111.930, 182.062 ], "x_axis": [ -0.275, -0.664, -0.696 ], "y_axis": [ -0.795, -0.249, 0.552 ], "z_axis": [ -0.540, 0.705, -0.459 ], "quaternion": [ 0.064, -0.599, 0.609, 0.516 ] } }, { "index": 2330, "index_chain": 2330, "chain_name": "A", "nt_resnum": 2563, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2563", "linked_nts": [ "///A/2562", "///A/2564" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop", "alpha": -43.024, "beta": 128.491, "gamma": 57.519, "delta": 83.758, "epsilon": -126.201, "zeta": -75.848, "epsilon_zeta": -50.353, "bb_type": "--", "chi": -146.207, "glyco_bond": "anti", "C5prime_xyz": [ -1.301, 8.767, -0.295 ], "P_xyz": [ 1.074, 8.284, -1.309 ], "form": ".", "ssZp": 3.750, "Dp": 4.690, "splay_angle": 40.298, "splay_distance": 7.247, "splay_ratio": 0.351, "d22": null, "d64": null, "eta": 167.593, "theta": -97.383, "eta_prime": -173.724, "theta_prime": -116.216, "eta_base": -120.068, "theta_base": -115.209, "v0": 2.631, "v1": -23.604, "v2": 34.482, "v3": -33.880, "v4": 19.730, "amplitude": 35.610, "phase_angle": 14.464, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.710, "filter_rmsd": 0.064, "frame": { "rmsd": 0.005, "origin": [ 220.925, 112.858, 180.111 ], "x_axis": [ -0.676, -0.709, -0.203 ], "y_axis": [ -0.582, 0.343, 0.737 ], "z_axis": [ -0.453, 0.616, -0.644 ], "quaternion": [ -0.076, -0.395, 0.816, 0.415 ] } }, { "index": 2331, "index_chain": 2331, "chain_name": "A", "nt_resnum": 2564, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2564", "linked_nts": [ "///A/2563", "///A/2565" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": 80.959, "beta": -142.408, "gamma": -100.994, "delta": 81.328, "epsilon": -119.857, "zeta": -79.048, "epsilon_zeta": -40.809, "bb_type": "--", "chi": 162.918, "glyco_bond": "anti", "C5prime_xyz": [ -1.727, 7.923, 2.514 ], "P_xyz": [ -1.666, 10.400, 3.383 ], "form": "A", "ssZp": 4.606, "Dp": 4.722, "splay_angle": 24.924, "splay_distance": 3.833, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": -179.351, "theta": -179.264, "eta_prime": -168.308, "theta_prime": -161.693, "eta_base": -137.265, "theta_base": -102.654, "v0": 3.435, "v1": -25.015, "v2": 35.940, "v3": -35.002, "v4": 19.878, "amplitude": 36.951, "phase_angle": 13.438, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 215.876, 113.806, 175.000 ], "x_axis": [ -0.451, -0.833, 0.321 ], "y_axis": [ 0.188, 0.263, 0.946 ], "z_axis": [ -0.872, 0.487, 0.038 ], "quaternion": [ -0.461, -0.249, 0.647, 0.554 ] } }, { "index": 2332, "index_chain": 2332, "chain_name": "A", "nt_resnum": 2565, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2565", "linked_nts": [ "///A/2564", "///A/2566" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -52.897, "beta": 173.657, "gamma": 38.307, "delta": 82.988, "epsilon": -148.513, "zeta": -78.522, "epsilon_zeta": -69.991, "bb_type": "BI", "chi": -166.416, "glyco_bond": "anti", "C5prime_xyz": [ -1.248, 8.619, 0.954 ], "P_xyz": [ 1.216, 8.827, 1.814 ], "form": "A", "ssZp": 4.523, "Dp": 4.628, "splay_angle": 20.947, "splay_distance": 3.322, "splay_ratio": 0.184, "d22": null, "d64": null, "eta": 159.879, "theta": -148.231, "eta_prime": 178.240, "theta_prime": -145.838, "eta_base": -119.989, "theta_base": -125.264, "v0": 4.126, "v1": -25.070, "v2": 35.328, "v3": -33.948, "v4": 18.823, "amplitude": 36.149, "phase_angle": 12.233, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.367, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 212.064, 113.523, 174.704 ], "x_axis": [ -0.095, -0.354, 0.930 ], "y_axis": [ 0.498, 0.792, 0.353 ], "z_axis": [ -0.862, 0.497, 0.102 ], "quaternion": [ 0.671, -0.054, -0.668, -0.318 ] } }, { "index": 2333, "index_chain": 2333, "chain_name": "A", "nt_resnum": 2566, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2566", "linked_nts": [ "///A/2565", "///A/2567" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -53.552, "beta": 164.871, "gamma": 50.149, "delta": 80.408, "epsilon": -149.698, "zeta": -76.324, "epsilon_zeta": -73.375, "bb_type": "BI", "chi": -164.074, "glyco_bond": "anti", "C5prime_xyz": [ -1.453, 8.732, 0.758 ], "P_xyz": [ 1.112, 9.156, 1.054 ], "form": "A", "ssZp": 4.461, "Dp": 4.589, "splay_angle": 22.328, "splay_distance": 3.484, "splay_ratio": 0.194, "d22": 4.078, "d64": 4.012, "eta": 169.455, "theta": -147.137, "eta_prime": -177.420, "theta_prime": -145.892, "eta_base": -143.488, "theta_base": -110.432, "v0": 0.492, "v1": -22.985, "v2": 35.487, "v3": -36.181, "v4": 22.500, "amplitude": 37.285, "phase_angle": 17.865, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.841, "filter_rmsd": 0.106, "frame": { "rmsd": 0.005, "origin": [ 208.746, 113.596, 174.557 ], "x_axis": [ 0.178, 0.051, 0.983 ], "y_axis": [ 0.424, 0.897, -0.123 ], "z_axis": [ -0.888, 0.439, 0.138 ], "quaternion": [ 0.744, -0.189, -0.629, -0.125 ] } }, { "index": 2334, "index_chain": 2334, "chain_name": "A", "nt_resnum": 2567, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2567", "linked_nts": [ "///A/2566", "///A/2568" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -56.335, "beta": 163.369, "gamma": 53.782, "delta": 82.084, "epsilon": -137.448, "zeta": -84.923, "epsilon_zeta": -52.525, "bb_type": "BI", "chi": -164.425, "glyco_bond": "anti", "C5prime_xyz": [ -1.240, 8.727, 0.791 ], "P_xyz": [ 1.368, 8.926, 0.953 ], "form": ".", "ssZp": 4.461, "Dp": 4.656, "splay_angle": 27.554, "splay_distance": 5.129, "splay_ratio": 0.256, "d22": 4.851, "d64": 6.067, "eta": 171.637, "theta": -121.214, "eta_prime": -174.026, "theta_prime": -135.295, "eta_base": -124.283, "theta_base": -131.934, "v0": 1.623, "v1": -23.406, "v2": 35.153, "v3": -35.138, "v4": 21.149, "amplitude": 36.591, "phase_angle": 16.115, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.892, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 205.794, 114.273, 176.279 ], "x_axis": [ 0.424, 0.576, 0.699 ], "y_axis": [ 0.188, 0.699, -0.690 ], "z_axis": [ -0.886, 0.424, 0.188 ], "quaternion": [ 0.760, -0.367, -0.521, 0.128 ] } }, { "index": 2335, "index_chain": 2335, "chain_name": "A", "nt_resnum": 2568, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2568", "linked_nts": [ "///A/2567", "///A/2569" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor", "alpha": 82.078, "beta": -152.452, "gamma": -107.840, "delta": 83.881, "epsilon": -134.233, "zeta": -70.944, "epsilon_zeta": -63.289, "bb_type": "BI", "chi": -174.998, "glyco_bond": "anti", "C5prime_xyz": [ -0.846, 8.363, 1.461 ], "P_xyz": [ -0.096, 10.868, 1.612 ], "form": "A", "ssZp": 4.690, "Dp": 4.737, "splay_angle": 18.869, "splay_distance": 3.096, "splay_ratio": 0.170, "d22": 4.158, "d64": 4.124, "eta": 174.128, "theta": -177.894, "eta_prime": 179.339, "theta_prime": -163.497, "eta_base": -157.008, "theta_base": -121.575, "v0": 7.256, "v1": -27.319, "v2": 36.052, "v3": -32.801, "v4": 16.171, "amplitude": 36.354, "phase_angle": 7.393, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.069, "frame": { "rmsd": 0.008, "origin": [ 201.816, 114.057, 179.509 ], "x_axis": [ 0.586, 0.688, 0.428 ], "y_axis": [ 0.141, 0.434, -0.890 ], "z_axis": [ -0.798, 0.582, 0.157 ], "quaternion": [ 0.738, -0.499, -0.416, 0.185 ] } }, { "index": 2336, "index_chain": 2336, "chain_name": "A", "nt_resnum": 2569, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2569", "linked_nts": [ "///A/2568", "///A/2570" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor", "alpha": -51.188, "beta": 172.390, "gamma": 37.581, "delta": 77.773, "epsilon": -152.319, "zeta": -82.923, "epsilon_zeta": -69.396, "bb_type": "BI", "chi": -154.354, "glyco_bond": "anti", "C5prime_xyz": [ -1.351, 8.828, 0.178 ], "P_xyz": [ 1.177, 9.440, 0.473 ], "form": ".", "ssZp": 4.288, "Dp": 4.642, "splay_angle": 30.737, "splay_distance": 4.852, "splay_ratio": 0.266, "d22": null, "d64": null, "eta": 160.531, "theta": -123.041, "eta_prime": 178.425, "theta_prime": -122.822, "eta_base": -134.391, "theta_base": -76.258, "v0": 1.518, "v1": -24.810, "v2": 37.439, "v3": -37.612, "v4": 22.738, "amplitude": 39.037, "phase_angle": 16.450, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.490, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 200.481, 115.706, 181.763 ], "x_axis": [ 0.586, 0.792, -0.173 ], "y_axis": [ -0.376, 0.076, -0.923 ], "z_axis": [ -0.718, 0.606, 0.343 ], "quaternion": [ 0.708, -0.540, -0.192, 0.412 ] } }, { "index": 2337, "index_chain": 2337, "chain_name": "A", "nt_resnum": 2570, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2570", "linked_nts": [ "///A/2569", "///A/2571" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,bulge", "alpha": 160.835, "beta": -136.959, "gamma": 160.678, "delta": 83.416, "epsilon": -114.386, "zeta": -85.570, "epsilon_zeta": -28.816, "bb_type": "--", "chi": -175.554, "glyco_bond": "anti", "C5prime_xyz": [ -1.279, 8.427, 1.471 ], "P_xyz": [ 0.852, 9.252, 0.193 ], "form": ".", "ssZp": 4.614, "Dp": 4.718, "splay_angle": 39.092, "splay_distance": 6.037, "splay_ratio": 0.335, "d22": null, "d64": null, "eta": 164.311, "theta": -146.730, "eta_prime": -171.476, "theta_prime": -136.718, "eta_base": -106.351, "theta_base": -129.979, "v0": 3.744, "v1": -24.284, "v2": 34.473, "v3": -33.312, "v4": 18.691, "amplitude": 35.342, "phase_angle": 12.734, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.312, "filter_rmsd": 0.042, "frame": { "rmsd": 0.007, "origin": [ 200.536, 120.528, 181.229 ], "x_axis": [ 0.253, 0.389, -0.886 ], "y_axis": [ -0.803, -0.427, -0.417 ], "z_axis": [ -0.540, 0.817, 0.204 ], "quaternion": [ 0.508, -0.607, 0.170, 0.587 ] } }, { "index": 2338, "index_chain": 2338, "chain_name": "A", "nt_resnum": 2571, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2571", "linked_nts": [ "///A/2570", "///A/2572" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,non-canonical,non-pair-contact,multiplet,bulge,phosphate", "alpha": -47.888, "beta": -148.753, "gamma": 51.442, "delta": 146.976, "epsilon": -118.460, "zeta": 125.424, "epsilon_zeta": 116.116, "bb_type": "--", "chi": -71.197, "glyco_bond": "--", "C5prime_xyz": [ -2.888, 6.893, -2.998 ], "P_xyz": [ -0.746, 8.223, -3.688 ], "form": ".", "ssZp": 0.458, "Dp": 1.368, "splay_angle": 57.133, "splay_distance": 9.781, "splay_ratio": 0.478, "d22": null, "d64": null, "eta": -144.561, "theta": 118.758, "eta_prime": -130.444, "theta_prime": 93.963, "eta_base": -132.523, "theta_base": 94.103, "v0": -18.537, "v1": 33.121, "v2": -34.245, "v3": 24.480, "v4": -3.925, "amplitude": 35.068, "phase_angle": 167.559, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.502, "filter_rmsd": 0.039, "frame": { "rmsd": 0.005, "origin": [ 198.352, 126.045, 182.341 ], "x_axis": [ -0.016, 0.195, -0.981 ], "y_axis": [ -0.956, -0.290, -0.042 ], "z_axis": [ -0.293, 0.937, 0.191 ], "quaternion": [ 0.470, -0.520, 0.366, 0.612 ] } }, { "index": 2339, "index_chain": 2339, "chain_name": "A", "nt_resnum": 2572, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2572", "linked_nts": [ "///A/2571", "///A/2573" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,cap-donor", "alpha": -90.267, "beta": 173.713, "gamma": -30.732, "delta": 86.406, "epsilon": -154.166, "zeta": -62.412, "epsilon_zeta": -91.754, "bb_type": "BI", "chi": -161.086, "glyco_bond": "anti", "C5prime_xyz": [ -0.903, 8.560, 0.610 ], "P_xyz": [ 0.840, 9.829, 2.090 ], "form": "A", "ssZp": 4.482, "Dp": 4.635, "splay_angle": 27.421, "splay_distance": 4.215, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 110.261, "theta": -159.341, "eta_prime": 100.033, "theta_prime": -147.444, "eta_base": 113.266, "theta_base": -103.930, "v0": 8.328, "v1": -27.742, "v2": 35.530, "v3": -31.685, "v4": 14.831, "amplitude": 35.692, "phase_angle": 5.457, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 199.044, 119.492, 189.569 ], "x_axis": [ 0.225, 0.224, -0.948 ], "y_axis": [ -0.972, 0.118, -0.203 ], "z_axis": [ 0.066, 0.967, 0.245 ], "quaternion": [ 0.630, -0.464, 0.402, 0.475 ] } }, { "index": 2340, "index_chain": 2340, "chain_name": "A", "nt_resnum": 2573, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2573", "linked_nts": [ "///A/2572", "///A/2574" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor", "alpha": -76.754, "beta": 170.526, "gamma": 66.509, "delta": 82.397, "epsilon": -146.634, "zeta": -71.688, "epsilon_zeta": -74.946, "bb_type": "BI", "chi": -172.540, "glyco_bond": "anti", "C5prime_xyz": [ -1.320, 8.505, 1.257 ], "P_xyz": [ 1.292, 8.763, 1.254 ], "form": "A", "ssZp": 4.664, "Dp": 4.689, "splay_angle": 21.542, "splay_distance": 3.437, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 166.631, "theta": -139.825, "eta_prime": -172.566, "theta_prime": -141.158, "eta_base": -120.164, "theta_base": -116.671, "v0": 5.534, "v1": -27.023, "v2": 37.107, "v3": -34.907, "v4": 18.544, "amplitude": 37.723, "phase_angle": 10.367, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.623, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 200.323, 123.481, 189.093 ], "x_axis": [ -0.421, 0.202, -0.884 ], "y_axis": [ -0.907, -0.104, 0.408 ], "z_axis": [ -0.009, 0.974, 0.227 ], "quaternion": [ 0.419, -0.338, 0.522, 0.662 ] } }, { "index": 2341, "index_chain": 2341, "chain_name": "A", "nt_resnum": 2574, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2574", "linked_nts": [ "///A/2573", "///A/2575" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor", "alpha": -63.938, "beta": 165.328, "gamma": 62.153, "delta": 81.166, "epsilon": -92.936, "zeta": -119.300, "epsilon_zeta": 26.364, "bb_type": "--", "chi": -169.558, "glyco_bond": "anti", "C5prime_xyz": [ -1.624, 8.690, 1.042 ], "P_xyz": [ 0.945, 9.231, 1.102 ], "form": ".", "ssZp": 4.277, "Dp": 4.644, "splay_angle": 19.193, "splay_distance": 3.400, "splay_ratio": 0.172, "d22": null, "d64": null, "eta": -175.306, "theta": -117.122, "eta_prime": -163.816, "theta_prime": -122.959, "eta_base": -126.003, "theta_base": -101.797, "v0": 0.726, "v1": -22.945, "v2": 35.157, "v3": -35.699, "v4": 22.084, "amplitude": 36.863, "phase_angle": 17.498, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.847, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 201.401, 126.564, 188.022 ], "x_axis": [ -0.845, 0.157, -0.511 ], "y_axis": [ -0.529, -0.115, 0.841 ], "z_axis": [ 0.073, 0.981, 0.180 ], "quaternion": [ 0.235, -0.149, 0.623, 0.731 ] } }, { "index": 2342, "index_chain": 2342, "chain_name": "A", "nt_resnum": 2575, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2575", "linked_nts": [ "///A/2574", "///A/2576" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart", "alpha": 81.106, "beta": -98.246, "gamma": -136.649, "delta": 82.213, "epsilon": -147.298, "zeta": -177.248, "epsilon_zeta": 29.950, "bb_type": "--", "chi": -140.908, "glyco_bond": "anti", "C5prime_xyz": [ -1.467, 8.710, -0.619 ], "P_xyz": [ -2.192, 9.627, -2.955 ], "form": ".", "ssZp": 3.706, "Dp": 4.617, "splay_angle": 119.019, "splay_distance": 17.825, "splay_ratio": 0.863, "d22": 11.699, "d64": 14.722, "eta": -169.865, "theta": 74.319, "eta_prime": -162.383, "theta_prime": 96.451, "eta_base": -126.757, "theta_base": 124.133, "v0": 1.495, "v1": -23.461, "v2": 35.229, "v3": -35.349, "v4": 21.322, "amplitude": 36.705, "phase_angle": 16.305, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.107, "frame": { "rmsd": 0.004, "origin": [ 200.691, 129.596, 186.660 ], "x_axis": [ -0.805, 0.538, -0.250 ], "y_axis": [ -0.066, 0.338, 0.939 ], "z_axis": [ 0.590, 0.772, -0.236 ], "quaternion": [ 0.272, 0.153, 0.771, 0.555 ] } }, { "index": 2343, "index_chain": 2343, "chain_name": "A", "nt_resnum": 2576, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2576", "linked_nts": [ "///A/2575", "///A/2577" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": 58.131, "beta": -159.024, "gamma": -41.581, "delta": 150.230, "epsilon": -163.655, "zeta": -109.000, "epsilon_zeta": -54.656, "bb_type": "BI", "chi": -126.193, "glyco_bond": "anti", "C5prime_xyz": [ -1.871, 8.572, -0.827 ], "P_xyz": [ -1.471, 11.126, -0.406 ], "form": ".", "ssZp": 1.949, "Dp": 1.996, "splay_angle": 21.547, "splay_distance": 3.845, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": -111.907, "theta": -139.342, "eta_prime": -130.334, "theta_prime": -156.395, "eta_base": -170.445, "theta_base": -115.279, "v0": -20.256, "v1": 36.089, "v2": -37.218, "v3": 26.454, "v4": -4.105, "amplitude": 38.149, "phase_angle": 167.313, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.004, "origin": [ 215.115, 135.140, 195.544 ], "x_axis": [ 0.243, 0.070, -0.968 ], "y_axis": [ -0.968, -0.041, -0.246 ], "z_axis": [ -0.057, 0.997, 0.058 ], "quaternion": [ 0.561, -0.554, 0.406, 0.463 ] } }, { "index": 2344, "index_chain": 2344, "chain_name": "A", "nt_resnum": 2577, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2577", "linked_nts": [ "///A/2576", "///A/2578" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 136.737, "beta": -176.370, "gamma": 166.594, "delta": 80.864, "epsilon": -159.390, "zeta": -75.176, "epsilon_zeta": -84.214, "bb_type": "BI", "chi": -153.580, "glyco_bond": "anti", "C5prime_xyz": [ -1.333, 8.863, 0.164 ], "P_xyz": [ -0.040, 10.291, -1.617 ], "form": ".", "ssZp": 4.209, "Dp": 4.498, "splay_angle": 20.384, "splay_distance": 3.682, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 130.498, "theta": -150.485, "eta_prime": 148.106, "theta_prime": -158.545, "eta_base": -154.848, "theta_base": -136.623, "v0": 0.536, "v1": -22.538, "v2": 34.723, "v3": -35.362, "v4": 21.988, "amplitude": 36.465, "phase_angle": 17.783, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 216.060, 138.867, 195.462 ], "x_axis": [ -0.407, 0.032, -0.913 ], "y_axis": [ -0.911, -0.084, 0.403 ], "z_axis": [ -0.064, 0.996, 0.063 ], "quaternion": [ 0.378, -0.392, 0.561, 0.623 ] } }, { "index": 2345, "index_chain": 2345, "chain_name": "A", "nt_resnum": 2578, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2578", "linked_nts": [ "///A/2577", "///A/2579" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 142.575, "beta": -158.281, "gamma": -176.244, "delta": 81.359, "epsilon": -138.711, "zeta": -80.909, "epsilon_zeta": -57.802, "bb_type": "BI", "chi": -176.057, "glyco_bond": "anti", "C5prime_xyz": [ -1.400, 8.579, 1.460 ], "P_xyz": [ 0.093, 10.428, 0.359 ], "form": "A", "ssZp": 4.633, "Dp": 4.644, "splay_angle": 22.822, "splay_distance": 3.617, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 161.604, "theta": -172.550, "eta_prime": 176.950, "theta_prime": -167.401, "eta_base": -143.268, "theta_base": -136.894, "v0": 1.149, "v1": -22.839, "v2": 34.704, "v3": -34.986, "v4": 21.388, "amplitude": 36.264, "phase_angle": 16.868, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.856, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 216.887, 141.945, 193.618 ], "x_axis": [ -0.747, -0.215, -0.630 ], "y_axis": [ -0.645, 0.005, 0.764 ], "z_axis": [ -0.161, 0.977, -0.142 ], "quaternion": [ 0.170, -0.313, 0.688, 0.632 ] } }, { "index": 2346, "index_chain": 2346, "chain_name": "A", "nt_resnum": 2579, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2579", "linked_nts": [ "///A/2578", "///A/2580" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -50.955, "beta": 169.307, "gamma": 40.206, "delta": 80.085, "epsilon": -146.686, "zeta": -79.953, "epsilon_zeta": -66.733, "bb_type": "BI", "chi": -168.320, "glyco_bond": "anti", "C5prime_xyz": [ -1.322, 8.695, 1.013 ], "P_xyz": [ 1.164, 9.074, 1.725 ], "form": ".", "ssZp": 4.573, "Dp": 4.646, "splay_angle": 30.760, "splay_distance": 5.210, "splay_ratio": 0.275, "d22": null, "d64": null, "eta": 165.619, "theta": -123.240, "eta_prime": 177.772, "theta_prime": -128.423, "eta_base": -141.563, "theta_base": -108.392, "v0": 1.944, "v1": -24.216, "v2": 36.057, "v3": -35.934, "v4": 21.438, "amplitude": 37.456, "phase_angle": 15.709, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.589, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 217.009, 144.913, 191.555 ], "x_axis": [ -0.950, -0.305, -0.066 ], "y_axis": [ -0.106, 0.116, 0.988 ], "z_axis": [ -0.294, 0.945, -0.142 ], "quaternion": [ -0.077, -0.138, 0.743, 0.650 ] } }, { "index": 2347, "index_chain": 2347, "chain_name": "A", "nt_resnum": 2580, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2580", "linked_nts": [ "///A/2579", "///A/2581" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": 169.190, "beta": -163.936, "gamma": 169.193, "delta": 80.419, "epsilon": -124.047, "zeta": -64.415, "epsilon_zeta": -59.631, "bb_type": "--", "chi": -172.864, "glyco_bond": "anti", "C5prime_xyz": [ -1.275, 8.550, 1.278 ], "P_xyz": [ 0.309, 10.183, -0.025 ], "form": ".", "ssZp": 4.713, "Dp": 4.802, "splay_angle": 22.220, "splay_distance": 4.097, "splay_ratio": 0.213, "d22": 4.400, "d64": 4.653, "eta": 165.015, "theta": -120.255, "eta_prime": -178.833, "theta_prime": -138.701, "eta_base": -142.254, "theta_base": -126.308, "v0": 4.634, "v1": -26.964, "v2": 37.807, "v3": -36.156, "v4": 19.891, "amplitude": 38.632, "phase_angle": 11.866, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.587, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 214.103, 148.235, 188.786 ], "x_axis": [ -0.854, -0.244, 0.458 ], "y_axis": [ 0.391, 0.277, 0.877 ], "z_axis": [ -0.341, 0.929, -0.141 ], "quaternion": [ -0.265, 0.049, 0.754, 0.599 ] } }, { "index": 2348, "index_chain": 2348, "chain_name": "A", "nt_resnum": 2581, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2581", "linked_nts": [ "///A/2580", "///A/2582" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor", "alpha": 170.004, "beta": 161.950, "gamma": 159.272, "delta": 83.502, "epsilon": -104.717, "zeta": -66.368, "epsilon_zeta": -38.349, "bb_type": "--", "chi": -162.555, "glyco_bond": "anti", "C5prime_xyz": [ -1.348, 8.689, 0.667 ], "P_xyz": [ -0.239, 10.478, -0.909 ], "form": ".", "ssZp": 4.221, "Dp": 4.711, "splay_angle": 58.203, "splay_distance": 9.575, "splay_ratio": 0.488, "d22": null, "d64": null, "eta": 138.075, "theta": -104.331, "eta_prime": 157.545, "theta_prime": -141.792, "eta_base": -174.236, "theta_base": 177.357, "v0": 2.524, "v1": -23.867, "v2": 34.809, "v3": -34.292, "v4": 20.094, "amplitude": 35.978, "phase_angle": 14.645, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.243, "filter_rmsd": 0.104, "frame": { "rmsd": 0.002, "origin": [ 210.538, 149.613, 187.310 ], "x_axis": [ -0.227, -0.561, 0.796 ], "y_axis": [ 0.591, 0.570, 0.570 ], "z_axis": [ -0.774, 0.600, 0.202 ], "quaternion": [ 0.622, -0.012, -0.631, -0.463 ] } }, { "index": 2349, "index_chain": 2349, "chain_name": "A", "nt_resnum": 2582, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2582", "linked_nts": [ "///A/2581", "///A/2583" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop,cap-acceptor", "alpha": 169.228, "beta": 175.789, "gamma": 43.575, "delta": 76.304, "epsilon": -158.376, "zeta": -58.947, "epsilon_zeta": -99.429, "bb_type": "BI", "chi": -162.891, "glyco_bond": "anti", "C5prime_xyz": [ -1.961, 8.926, 0.580 ], "P_xyz": [ 0.281, 10.124, 1.176 ], "form": ".", "ssZp": 4.410, "Dp": 4.491, "splay_angle": 26.240, "splay_distance": 5.070, "splay_ratio": 0.252, "d22": null, "d64": null, "eta": 6.121, "theta": -116.679, "eta_prime": 47.049, "theta_prime": -121.336, "eta_base": 43.144, "theta_base": -87.168, "v0": -4.877, "v1": -19.364, "v2": 34.745, "v3": -38.574, "v4": 27.411, "amplitude": 38.564, "phase_angle": 25.714, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.262, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 204.466, 156.548, 184.720 ], "x_axis": [ 0.566, 0.217, -0.796 ], "y_axis": [ 0.749, 0.267, 0.606 ], "z_axis": [ 0.344, -0.939, -0.011 ], "quaternion": [ 0.675, 0.572, 0.422, -0.197 ] } }, { "index": 2350, "index_chain": 2350, "chain_name": "A", "nt_resnum": 2583, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2583", "linked_nts": [ "///A/2582", "///A/2584" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate", "alpha": 114.425, "beta": -157.013, "gamma": -130.845, "delta": 81.393, "epsilon": -121.396, "zeta": -90.375, "epsilon_zeta": -31.021, "bb_type": "--", "chi": -157.291, "glyco_bond": "anti", "C5prime_xyz": [ -1.468, 8.774, 0.364 ], "P_xyz": [ -1.192, 11.093, -0.828 ], "form": ".", "ssZp": 4.170, "Dp": 4.695, "splay_angle": 27.274, "splay_distance": 4.497, "splay_ratio": 0.236, "d22": 4.880, "d64": 4.602, "eta": -174.983, "theta": 173.773, "eta_prime": -158.077, "theta_prime": -176.907, "eta_base": -105.227, "theta_base": -171.167, "v0": 1.050, "v1": -23.106, "v2": 35.127, "v3": -35.479, "v4": 21.714, "amplitude": 36.731, "phase_angle": 16.992, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.002, "origin": [ 206.805, 154.483, 180.723 ], "x_axis": [ 0.945, -0.016, -0.328 ], "y_axis": [ 0.321, -0.160, 0.933 ], "z_axis": [ -0.068, -0.987, -0.146 ], "quaternion": [ 0.640, 0.750, 0.102, -0.132 ] } }, { "index": 2351, "index_chain": 2351, "chain_name": "A", "nt_resnum": 2584, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2584", "linked_nts": [ "///A/2583", "///A/2585" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": -85.781, "beta": -177.738, "gamma": 38.065, "delta": 81.075, "epsilon": -130.003, "zeta": -52.188, "epsilon_zeta": -77.816, "bb_type": "BI", "chi": -160.756, "glyco_bond": "anti", "C5prime_xyz": [ -1.548, 8.774, 0.559 ], "P_xyz": [ 0.794, 9.518, 1.464 ], "form": ".", "ssZp": 4.326, "Dp": 4.656, "splay_angle": 48.359, "splay_distance": 7.504, "splay_ratio": 0.410, "d22": 4.082, "d64": 5.044, "eta": 142.313, "theta": -113.941, "eta_prime": 146.919, "theta_prime": -100.847, "eta_base": 153.293, "theta_base": -52.116, "v0": 0.110, "v1": -22.365, "v2": 34.799, "v3": -35.722, "v4": 22.451, "amplitude": 36.681, "phase_angle": 18.434, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.260, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 205.520, 150.563, 178.932 ], "x_axis": [ 0.498, 0.854, 0.152 ], "y_axis": [ -0.051, -0.146, 0.988 ], "z_axis": [ 0.866, -0.500, -0.029 ], "quaternion": [ 0.575, 0.647, 0.310, 0.393 ] } }, { "index": 2352, "index_chain": 2352, "chain_name": "A", "nt_resnum": 2585, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2585", "linked_nts": [ "///A/2584", "///A/2586" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop", "alpha": -64.947, "beta": 157.966, "gamma": 71.927, "delta": 84.087, "epsilon": -109.763, "zeta": -70.659, "epsilon_zeta": -39.104, "bb_type": "--", "chi": -160.578, "glyco_bond": "anti", "C5prime_xyz": [ -1.281, 8.761, 0.569 ], "P_xyz": [ 1.271, 8.983, -0.030 ], "form": ".", "ssZp": 4.167, "Dp": 4.670, "splay_angle": 52.657, "splay_distance": 8.239, "splay_ratio": 0.444, "d22": null, "d64": null, "eta": 176.825, "theta": -107.769, "eta_prime": -148.433, "theta_prime": -106.814, "eta_base": -81.718, "theta_base": -73.677, "v0": 1.576, "v1": -22.635, "v2": 33.851, "v3": -33.849, "v4": 20.387, "amplitude": 35.228, "phase_angle": 16.077, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.333, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 210.944, 152.831, 183.595 ], "x_axis": [ 0.087, 0.088, 0.992 ], "y_axis": [ -0.402, -0.908, 0.116 ], "z_axis": [ 0.912, -0.409, -0.044 ], "quaternion": [ 0.184, 0.714, -0.110, 0.667 ] } }, { "index": 2353, "index_chain": 2353, "chain_name": "A", "nt_resnum": 2586, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2586", "linked_nts": [ "///A/2585", "///A/2587" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -62.323, "beta": 177.857, "gamma": 46.501, "delta": 81.125, "epsilon": -150.202, "zeta": -79.342, "epsilon_zeta": -70.860, "bb_type": "BI", "chi": 179.271, "glyco_bond": "anti", "C5prime_xyz": [ -1.513, 8.371, 1.709 ], "P_xyz": [ 0.915, 8.548, 2.682 ], "form": ".", "ssZp": 4.663, "Dp": 4.656, "splay_angle": 27.257, "splay_distance": 4.231, "splay_ratio": 0.242, "d22": null, "d64": null, "eta": 155.106, "theta": -153.714, "eta_prime": -178.733, "theta_prime": -148.892, "eta_base": -122.207, "theta_base": -133.339, "v0": 4.077, "v1": -25.899, "v2": 36.739, "v3": -35.411, "v4": 19.725, "amplitude": 37.637, "phase_angle": 12.545, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.286, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 214.548, 147.737, 188.973 ], "x_axis": [ -0.902, -0.178, 0.393 ], "y_axis": [ -0.364, -0.176, -0.915 ], "z_axis": [ 0.232, -0.968, 0.094 ], "quaternion": [ 0.063, 0.212, -0.639, 0.737 ] } }, { "index": 2354, "index_chain": 2354, "chain_name": "A", "nt_resnum": 2587, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2587", "linked_nts": [ "///A/2586", "///A/2588" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -69.619, "beta": -178.925, "gamma": 63.040, "delta": 82.370, "epsilon": -156.848, "zeta": -66.832, "epsilon_zeta": -90.016, "bb_type": "BI", "chi": -168.083, "glyco_bond": "anti", "C5prime_xyz": [ -1.384, 8.690, 0.997 ], "P_xyz": [ 1.177, 9.054, 1.414 ], "form": "A", "ssZp": 4.501, "Dp": 4.546, "splay_angle": 22.006, "splay_distance": 3.509, "splay_ratio": 0.194, "d22": 4.357, "d64": 4.350, "eta": 176.526, "theta": -144.294, "eta_prime": -174.738, "theta_prime": -144.874, "eta_base": -151.328, "theta_base": -119.971, "v0": 1.644, "v1": -23.466, "v2": 35.066, "v3": -35.097, "v4": 21.093, "amplitude": 36.491, "phase_angle": 16.066, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.802, "filter_rmsd": 0.060, "frame": { "rmsd": 0.005, "origin": [ 216.690, 145.270, 191.662 ], "x_axis": [ -0.971, -0.229, -0.070 ], "y_axis": [ 0.093, -0.088, -0.992 ], "z_axis": [ 0.221, -0.969, 0.107 ], "quaternion": [ -0.109, 0.051, -0.666, 0.736 ] } }, { "index": 2355, "index_chain": 2355, "chain_name": "A", "nt_resnum": 2588, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2588", "linked_nts": [ "///A/2587", "///A/2589" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -79.029, "beta": 178.751, "gamma": 64.251, "delta": 82.420, "epsilon": -159.877, "zeta": -69.195, "epsilon_zeta": -90.681, "bb_type": "BI", "chi": -165.180, "glyco_bond": "anti", "C5prime_xyz": [ -1.402, 8.773, 0.818 ], "P_xyz": [ 1.163, 9.218, 1.160 ], "form": "A", "ssZp": 4.386, "Dp": 4.468, "splay_angle": 22.318, "splay_distance": 3.617, "splay_ratio": 0.196, "d22": 4.578, "d64": 4.655, "eta": 167.261, "theta": -148.836, "eta_prime": -177.665, "theta_prime": -149.583, "eta_base": -136.442, "theta_base": -131.916, "v0": 0.050, "v1": -21.758, "v2": 33.858, "v3": -34.757, "v4": 21.891, "amplitude": 35.700, "phase_angle": 18.487, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.684, "filter_rmsd": 0.062, "frame": { "rmsd": 0.004, "origin": [ 216.583, 142.321, 193.561 ], "x_axis": [ -0.768, -0.162, -0.620 ], "y_axis": [ 0.627, 0.013, -0.779 ], "z_axis": [ 0.134, -0.987, 0.092 ], "quaternion": [ -0.290, -0.179, -0.650, 0.680 ] } }, { "index": 2356, "index_chain": 2356, "chain_name": "A", "nt_resnum": 2589, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2589", "linked_nts": [ "///A/2588", "///A/2590" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -70.550, "beta": -179.844, "gamma": 56.821, "delta": 82.983, "epsilon": -125.435, "zeta": -91.922, "epsilon_zeta": -33.512, "bb_type": "--", "chi": -158.993, "glyco_bond": "anti", "C5prime_xyz": [ -1.478, 8.861, 0.447 ], "P_xyz": [ 1.047, 9.419, 0.903 ], "form": ".", "ssZp": 4.144, "Dp": 4.552, "splay_angle": 23.727, "splay_distance": 3.866, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 177.870, "theta": -143.593, "eta_prime": -173.401, "theta_prime": -140.140, "eta_base": -146.847, "theta_base": -109.621, "v0": -2.234, "v1": -19.208, "v2": 32.042, "v3": -34.240, "v4": 23.032, "amplitude": 34.614, "phase_angle": 22.227, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.879, "filter_rmsd": 0.062, "frame": { "rmsd": 0.005, "origin": [ 215.868, 139.238, 195.312 ], "x_axis": [ -0.382, -0.081, -0.921 ], "y_axis": [ 0.921, 0.042, -0.386 ], "z_axis": [ 0.070, -0.996, 0.059 ], "quaternion": [ -0.424, -0.359, -0.584, 0.591 ] } }, { "index": 2357, "index_chain": 2357, "chain_name": "A", "nt_resnum": 2590, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2590", "linked_nts": [ "///A/2589", "///A/2591" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -57.934, "beta": 154.698, "gamma": 49.647, "delta": 80.770, "epsilon": -152.012, "zeta": -91.436, "epsilon_zeta": -60.577, "bb_type": "BI", "chi": -158.200, "glyco_bond": "anti", "C5prime_xyz": [ -1.441, 8.761, 0.412 ], "P_xyz": [ 1.152, 9.083, 0.301 ], "form": ".", "ssZp": 4.361, "Dp": 4.584, "splay_angle": 25.593, "splay_distance": 4.833, "splay_ratio": 0.242, "d22": null, "d64": null, "eta": 157.379, "theta": -131.361, "eta_prime": 172.957, "theta_prime": -147.240, "eta_base": -144.100, "theta_base": -159.323, "v0": 0.694, "v1": -22.806, "v2": 34.963, "v3": -35.555, "v4": 22.018, "amplitude": 36.674, "phase_angle": 17.570, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.489, "filter_rmsd": 0.039, "frame": { "rmsd": 0.004, "origin": [ 215.599, 135.437, 194.660 ], "x_axis": [ 0.176, 0.283, -0.943 ], "y_axis": [ 0.981, 0.025, 0.191 ], "z_axis": [ 0.077, -0.959, -0.273 ], "quaternion": [ 0.482, 0.597, 0.529, -0.363 ] } }, { "index": 2358, "index_chain": 2358, "chain_name": "A", "nt_resnum": 2591, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2591", "linked_nts": [ "///A/2590", "///A/2592" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": 107.191, "beta": -141.375, "gamma": -134.745, "delta": 81.540, "epsilon": -146.714, "zeta": -53.498, "epsilon_zeta": -93.216, "bb_type": "BI", "chi": 178.952, "glyco_bond": "anti", "C5prime_xyz": [ -1.635, 8.428, 1.706 ], "P_xyz": [ -1.070, 10.893, 0.985 ], "form": ".", "ssZp": 4.593, "Dp": 4.619, "splay_angle": 32.714, "splay_distance": 4.967, "splay_ratio": 0.283, "d22": 4.277, "d64": 4.417, "eta": -175.754, "theta": -170.184, "eta_prime": -173.861, "theta_prime": -154.330, "eta_base": -167.648, "theta_base": -97.211, "v0": 1.137, "v1": -23.333, "v2": 35.287, "v3": -35.606, "v4": 21.720, "amplitude": 36.867, "phase_angle": 16.832, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.005, "origin": [ 212.243, 131.984, 194.247 ], "x_axis": [ 0.235, 0.301, -0.924 ], "y_axis": [ 0.970, -0.010, 0.243 ], "z_axis": [ 0.064, -0.954, -0.294 ], "quaternion": [ 0.483, 0.620, 0.512, -0.347 ] } }, { "index": 2359, "index_chain": 2359, "chain_name": "A", "nt_resnum": 2592, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2592", "linked_nts": [ "///A/2591", "///A/2593" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-pair-contact,junction-loop,splayed-apart", "alpha": -81.035, "beta": -175.745, "gamma": 62.447, "delta": 84.393, "epsilon": -131.371, "zeta": -78.382, "epsilon_zeta": -52.989, "bb_type": "BI", "chi": -159.719, "glyco_bond": "anti", "C5prime_xyz": [ -1.263, 8.670, 0.539 ], "P_xyz": [ 1.343, 8.918, 0.772 ], "form": ".", "ssZp": 4.336, "Dp": 4.679, "splay_angle": 86.777, "splay_distance": 12.592, "splay_ratio": 0.687, "d22": null, "d64": null, "eta": 170.018, "theta": -111.868, "eta_prime": -166.876, "theta_prime": -154.506, "eta_base": -99.554, "theta_base": 152.191, "v0": 3.503, "v1": -24.024, "v2": 34.276, "v3": -33.202, "v4": 18.737, "amplitude": 35.182, "phase_angle": 13.030, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.588, "filter_rmsd": 0.107, "frame": { "rmsd": 0.004, "origin": [ 213.478, 129.227, 190.304 ], "x_axis": [ 0.953, 0.042, -0.301 ], "y_axis": [ 0.302, -0.242, 0.922 ], "z_axis": [ -0.034, -0.969, -0.243 ], "quaternion": [ 0.606, 0.781, 0.110, -0.108 ] } }, { "index": 2360, "index_chain": 2360, "chain_name": "A", "nt_resnum": 2593, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2593", "linked_nts": [ "///A/2592", "///A/2594" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,non-pair-contact,junction-loop,A-minor,ribose-zipper,cap-acceptor,phosphate,splayed-apart", "alpha": 165.648, "beta": 162.039, "gamma": 54.953, "delta": 79.478, "epsilon": -111.051, "zeta": -92.917, "epsilon_zeta": -18.134, "bb_type": "--", "chi": -139.308, "glyco_bond": "anti", "C5prime_xyz": [ -1.442, 8.683, -0.749 ], "P_xyz": [ 1.016, 8.946, -1.604 ], "form": ".", "ssZp": 3.095, "Dp": 4.769, "splay_angle": 34.250, "splay_distance": 5.627, "splay_ratio": 0.295, "d22": null, "d64": null, "eta": 28.259, "theta": -135.702, "eta_prime": 51.595, "theta_prime": -131.889, "eta_base": 30.074, "theta_base": -113.487, "v0": 2.203, "v1": -25.006, "v2": 37.014, "v3": -36.786, "v4": 21.803, "amplitude": 38.392, "phase_angle": 15.401, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.824, "filter_rmsd": 0.038, "frame": { "rmsd": 0.006, "origin": [ 204.046, 122.818, 195.642 ], "x_axis": [ -0.012, 0.767, 0.641 ], "y_axis": [ 0.997, 0.055, -0.047 ], "z_axis": [ -0.071, 0.639, -0.766 ], "quaternion": [ -0.263, 0.652, 0.677, 0.219 ] } }, { "index": 2361, "index_chain": 2361, "chain_name": "A", "nt_resnum": 2594, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2594", "linked_nts": [ "///A/2593", "///A/2595" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,A-minor,ribose-zipper", "alpha": -70.325, "beta": 161.256, "gamma": 62.252, "delta": 82.063, "epsilon": -107.674, "zeta": -101.546, "epsilon_zeta": -6.128, "bb_type": "--", "chi": -155.152, "glyco_bond": "anti", "C5prime_xyz": [ -1.663, 8.784, 0.212 ], "P_xyz": [ 0.870, 9.332, -0.180 ], "form": ".", "ssZp": 3.870, "Dp": 4.615, "splay_angle": 39.650, "splay_distance": 6.191, "splay_ratio": 0.350, "d22": null, "d64": null, "eta": 170.188, "theta": -139.454, "eta_prime": -179.515, "theta_prime": -126.991, "eta_base": -157.169, "theta_base": -79.163, "v0": -1.054, "v1": -20.873, "v2": 33.519, "v3": -35.100, "v4": 22.810, "amplitude": 35.731, "phase_angle": 20.266, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.233, "filter_rmsd": 0.038, "frame": { "rmsd": 0.008, "origin": [ 204.687, 128.159, 193.990 ], "x_axis": [ 0.308, -0.082, 0.948 ], "y_axis": [ 0.859, -0.404, -0.314 ], "z_axis": [ 0.409, 0.911, -0.054 ], "quaternion": [ -0.461, 0.664, 0.292, 0.511 ] } }, { "index": 2362, "index_chain": 2362, "chain_name": "A", "nt_resnum": 2595, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2595", "linked_nts": [ "///A/2594", "///A/2596" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart", "alpha": -49.138, "beta": 111.052, "gamma": 122.429, "delta": 149.328, "epsilon": -111.042, "zeta": 153.570, "epsilon_zeta": 95.388, "bb_type": "BII", "chi": -90.024, "glyco_bond": "anti", "C5prime_xyz": [ -2.512, 7.670, -2.443 ], "P_xyz": [ -1.565, 6.428, -4.544 ], "form": ".", "ssZp": 0.809, "Dp": 1.112, "splay_angle": 115.163, "splay_distance": 18.003, "splay_ratio": 0.844, "d22": null, "d64": null, "eta": -91.062, "theta": 51.265, "eta_prime": -92.037, "theta_prime": 74.150, "eta_base": -61.100, "theta_base": 109.999, "v0": -19.927, "v1": 35.272, "v2": -36.263, "v3": 25.723, "v4": -3.837, "amplitude": 37.207, "phase_angle": 167.062, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.006, "origin": [ 210.151, 130.295, 195.965 ], "x_axis": [ 0.866, 0.209, 0.454 ], "y_axis": [ 0.347, 0.403, -0.847 ], "z_axis": [ -0.360, 0.891, 0.276 ], "quaternion": [ 0.798, -0.545, -0.255, -0.043 ] } }, { "index": 2363, "index_chain": 2363, "chain_name": "A", "nt_resnum": 2596, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2596", "linked_nts": [ "///A/2595", "///A/2597" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart", "alpha": -89.647, "beta": -97.028, "gamma": -29.823, "delta": 82.285, "epsilon": -178.253, "zeta": -78.383, "epsilon_zeta": -99.871, "bb_type": "BI", "chi": -151.236, "glyco_bond": "anti", "C5prime_xyz": [ -1.199, 8.820, 0.009 ], "P_xyz": [ -1.497, 10.914, 1.571 ], "form": "A", "ssZp": 4.125, "Dp": 4.334, "splay_angle": 22.072, "splay_distance": 3.735, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": -167.893, "theta": 170.368, "eta_prime": 159.826, "theta_prime": -177.254, "eta_base": 151.520, "theta_base": -147.075, "v0": 1.025, "v1": -22.389, "v2": 34.072, "v3": -34.401, "v4": 21.071, "amplitude": 35.629, "phase_angle": 16.999, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 197.883, 129.794, 182.799 ], "x_axis": [ -0.466, -0.037, 0.884 ], "y_axis": [ 0.870, 0.165, 0.465 ], "z_axis": [ -0.163, 0.986, -0.045 ], "quaternion": [ -0.405, 0.322, 0.647, 0.560 ] } }, { "index": 2364, "index_chain": 2364, "chain_name": "A", "nt_resnum": 2597, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2597", "linked_nts": [ "///A/2596", "///A/2598" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,A-minor", "alpha": 163.579, "beta": -148.589, "gamma": 168.222, "delta": 83.086, "epsilon": -179.834, "zeta": 29.007, "epsilon_zeta": 151.158, "bb_type": "--", "chi": -169.547, "glyco_bond": "anti", "C5prime_xyz": [ -1.414, 8.727, 1.082 ], "P_xyz": [ 0.530, 9.917, -0.199 ], "form": ".", "ssZp": 4.117, "Dp": 4.190, "splay_angle": 17.909, "splay_distance": 3.345, "splay_ratio": 0.174, "d22": null, "d64": null, "eta": 172.000, "theta": -104.508, "eta_prime": -168.722, "theta_prime": -135.481, "eta_base": -136.596, "theta_base": -109.508, "v0": -1.954, "v1": -18.849, "v2": 31.221, "v3": -33.279, "v4": 22.212, "amplitude": 33.646, "phase_angle": 21.883, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.623, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 195.619, 132.693, 182.150 ], "x_axis": [ -0.090, 0.045, 0.995 ], "y_axis": [ 0.960, 0.271, 0.075 ], "z_axis": [ -0.266, 0.962, -0.068 ], "quaternion": [ 0.527, -0.420, -0.598, -0.433 ] } }, { "index": 2365, "index_chain": 2365, "chain_name": "A", "nt_resnum": 2598, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2598", "linked_nts": [ "///A/2597", "///A/2599" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,A-minor,phosphate", "alpha": -177.250, "beta": 90.379, "gamma": 150.873, "delta": 83.847, "epsilon": -125.776, "zeta": -93.036, "epsilon_zeta": -32.740, "bb_type": "--", "chi": -174.056, "glyco_bond": "anti", "C5prime_xyz": [ -1.409, 8.529, 1.362 ], "P_xyz": [ -1.263, 10.265, -0.585 ], "form": "A", "ssZp": 4.601, "Dp": 4.677, "splay_angle": 19.227, "splay_distance": 3.080, "splay_ratio": 0.168, "d22": null, "d64": null, "eta": 144.426, "theta": 163.880, "eta_prime": 164.632, "theta_prime": 177.723, "eta_base": -146.421, "theta_base": -155.274, "v0": 2.577, "v1": -23.174, "v2": 33.791, "v3": -33.316, "v4": 19.396, "amplitude": 34.908, "phase_angle": 14.533, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 193.372, 134.534, 183.808 ], "x_axis": [ 0.453, 0.066, 0.889 ], "y_axis": [ 0.796, 0.420, -0.437 ], "z_axis": [ -0.402, 0.905, 0.138 ], "quaternion": [ 0.709, -0.473, -0.455, -0.257 ] } }, { "index": 2366, "index_chain": 2366, "chain_name": "A", "nt_resnum": 2599, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2599", "linked_nts": [ "///A/2598", "///A/2600" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": -54.574, "beta": 151.500, "gamma": 53.223, "delta": 81.355, "epsilon": -115.714, "zeta": -62.649, "epsilon_zeta": -53.065, "bb_type": "--", "chi": -162.945, "glyco_bond": "anti", "C5prime_xyz": [ -1.729, 8.820, 0.683 ], "P_xyz": [ 0.848, 9.283, 0.690 ], "form": ".", "ssZp": 4.227, "Dp": 4.593, "splay_angle": 21.162, "splay_distance": 3.643, "splay_ratio": 0.186, "d22": null, "d64": null, "eta": 170.022, "theta": -124.059, "eta_prime": -178.596, "theta_prime": -131.120, "eta_base": -147.666, "theta_base": -109.444, "v0": -1.706, "v1": -20.496, "v2": 33.592, "v3": -35.553, "v4": 23.493, "amplitude": 36.048, "phase_angle": 21.274, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.442, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 191.284, 136.374, 185.128 ], "x_axis": [ 0.843, 0.142, 0.519 ], "y_axis": [ 0.407, 0.462, -0.788 ], "z_axis": [ -0.352, 0.875, 0.332 ], "quaternion": [ 0.812, -0.512, -0.268, -0.081 ] } }, { "index": 2367, "index_chain": 2367, "chain_name": "A", "nt_resnum": 2600, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2600", "linked_nts": [ "///A/2599", null ], "nt_type": "RNA", "dbn": ")", "is_broken": true, "summary": "break,anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end", "alpha": -102.262, "beta": 112.516, "gamma": 131.273, "delta": 80.375, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -166.302, "glyco_bond": "anti", "C5prime_xyz": [ -1.453, 8.706, 0.905 ], "P_xyz": [ -0.600, 9.999, -1.209 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 0.916, "v1": -23.309, "v2": 35.592, "v3": -36.015, "v4": 22.127, "amplitude": 37.259, "phase_angle": 17.204, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.007, "origin": [ 191.057, 138.882, 187.760 ], "x_axis": [ 0.906, 0.383, 0.181 ], "y_axis": [ -0.067, 0.551, -0.832 ], "z_axis": [ -0.418, 0.742, 0.525 ], "quaternion": [ 0.863, -0.456, -0.173, 0.130 ] } }, { "index": 2368, "index_chain": 2368, "chain_name": "A", "nt_resnum": 2615, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2615", "linked_nts": [ null, "///A/2616" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop", "alpha": null, "beta": 154.753, "gamma": 70.916, "delta": 82.326, "epsilon": -149.494, "zeta": -84.524, "epsilon_zeta": -64.970, "bb_type": "BI", "chi": -165.053, "glyco_bond": "anti", "C5prime_xyz": [ -1.414, 8.766, 0.810 ], "P_xyz": [ 1.138, 9.154, 0.389 ], "form": "A", "ssZp": 4.429, "Dp": 4.539, "splay_angle": 24.199, "splay_distance": 3.740, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": null, "theta": -154.849, "eta_prime": null, "theta_prime": -156.938, "eta_base": null, "theta_base": -136.303, "v0": -0.134, "v1": -21.448, "v2": 33.571, "v3": -34.587, "v4": 21.911, "amplitude": 35.464, "phase_angle": 18.805, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.003, "origin": [ 195.221, 174.746, 193.846 ], "x_axis": [ 0.268, -0.793, 0.547 ], "y_axis": [ 0.417, -0.416, -0.808 ], "z_axis": [ 0.869, 0.445, 0.219 ], "quaternion": [ 0.518, -0.605, 0.156, -0.584 ] } }, { "index": 2369, "index_chain": 2369, "chain_name": "A", "nt_resnum": 2616, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2616", "linked_nts": [ "///A/2615", "///A/2617" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop", "alpha": -71.262, "beta": 170.459, "gamma": 60.477, "delta": 85.010, "epsilon": -107.607, "zeta": -70.798, "epsilon_zeta": -36.810, "bb_type": "--", "chi": -160.703, "glyco_bond": "anti", "C5prime_xyz": [ -1.125, 8.595, 0.596 ], "P_xyz": [ 1.499, 8.675, 0.518 ], "form": ".", "ssZp": 4.217, "Dp": 4.769, "splay_angle": 75.716, "splay_distance": 11.187, "splay_ratio": 0.614, "d22": null, "d64": null, "eta": 179.505, "theta": -102.046, "eta_prime": -175.173, "theta_prime": -96.081, "eta_base": -147.737, "theta_base": -71.420, "v0": 5.764, "v1": -25.924, "v2": 35.067, "v3": -32.712, "v4": 17.072, "amplitude": 35.557, "phase_angle": 9.518, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.794, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 197.789, 176.975, 195.402 ], "x_axis": [ 0.404, -0.914, 0.046 ], "y_axis": [ 0.263, 0.068, -0.962 ], "z_axis": [ 0.876, 0.401, 0.268 ], "quaternion": [ 0.659, -0.517, 0.315, -0.446 ] } }, { "index": 2370, "index_chain": 2370, "chain_name": "A", "nt_resnum": 2617, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2617", "linked_nts": [ "///A/2616", "///A/2618" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack", "alpha": -76.807, "beta": -155.829, "gamma": 70.643, "delta": 84.181, "epsilon": -146.046, "zeta": -67.669, "epsilon_zeta": -78.377, "bb_type": "BI", "chi": -167.549, "glyco_bond": "anti", "C5prime_xyz": [ -1.210, 8.581, 0.993 ], "P_xyz": [ 1.338, 8.582, 1.594 ], "form": "A", "ssZp": 4.565, "Dp": 4.648, "splay_angle": 20.922, "splay_distance": 3.440, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": -177.587, "theta": -133.490, "eta_prime": -156.912, "theta_prime": -133.440, "eta_base": -123.423, "theta_base": -111.093, "v0": 4.423, "v1": -25.183, "v2": 35.192, "v3": -33.581, "v4": 18.440, "amplitude": 35.938, "phase_angle": 11.692, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.294, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 208.201, 175.254, 191.690 ], "x_axis": [ -0.388, -0.508, -0.769 ], "y_axis": [ -0.701, 0.705, -0.113 ], "z_axis": [ 0.599, 0.495, -0.629 ], "quaternion": [ 0.415, -0.366, 0.825, 0.116 ] } }, { "index": 2371, "index_chain": 2371, "chain_name": "A", "nt_resnum": 2618, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2618", "linked_nts": [ "///A/2617", "///A/2619" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -58.557, "beta": 178.187, "gamma": 41.611, "delta": 78.866, "epsilon": -175.706, "zeta": -95.636, "epsilon_zeta": -80.070, "bb_type": "BI", "chi": -157.148, "glyco_bond": "anti", "C5prime_xyz": [ -1.563, 8.778, 0.343 ], "P_xyz": [ 0.878, 9.538, 0.882 ], "form": "A", "ssZp": 4.271, "Dp": 4.384, "splay_angle": 24.672, "splay_distance": 3.872, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 163.019, "theta": -153.855, "eta_prime": -179.538, "theta_prime": -153.984, "eta_base": -137.714, "theta_base": -133.144, "v0": -0.562, "v1": -22.410, "v2": 35.659, "v3": -36.999, "v4": 23.674, "amplitude": 37.825, "phase_angle": 19.482, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.724, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 210.591, 174.935, 189.236 ], "x_axis": [ -0.793, -0.114, -0.598 ], "y_axis": [ -0.318, 0.915, 0.248 ], "z_axis": [ 0.519, 0.387, -0.762 ], "quaternion": [ 0.300, -0.116, 0.932, 0.170 ] } }, { "index": 2372, "index_chain": 2372, "chain_name": "A", "nt_resnum": 2619, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2619", "linked_nts": [ "///A/2618", "///A/2620" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 174.120, "beta": -135.400, "gamma": 150.692, "delta": 80.731, "epsilon": -119.500, "zeta": -98.494, "epsilon_zeta": -21.005, "bb_type": "--", "chi": -175.246, "glyco_bond": "anti", "C5prime_xyz": [ -1.488, 8.500, 1.420 ], "P_xyz": [ 0.773, 9.178, 0.311 ], "form": "A", "ssZp": 4.613, "Dp": 4.713, "splay_angle": 23.706, "splay_distance": 3.653, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 169.295, "theta": -148.297, "eta_prime": 179.292, "theta_prime": -149.394, "eta_base": -150.735, "theta_base": -113.930, "v0": 1.810, "v1": -23.923, "v2": 35.771, "v3": -35.743, "v4": 21.412, "amplitude": 37.200, "phase_angle": 15.930, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.011, "filter_rmsd": 0.040, "frame": { "rmsd": 0.006, "origin": [ 212.876, 174.849, 186.112 ], "x_axis": [ -0.882, 0.277, -0.382 ], "y_axis": [ 0.088, 0.892, 0.444 ], "z_axis": [ 0.463, 0.358, -0.811 ], "quaternion": [ 0.223, 0.096, 0.947, 0.212 ] } }, { "index": 2373, "index_chain": 2373, "chain_name": "A", "nt_resnum": 2620, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2620", "linked_nts": [ "///A/2619", "///A/2621" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -44.412, "beta": 145.799, "gamma": 48.101, "delta": 79.155, "epsilon": -145.636, "zeta": -77.158, "epsilon_zeta": -68.478, "bb_type": "BI", "chi": -162.794, "glyco_bond": "anti", "C5prime_xyz": [ -1.246, 8.718, 0.691 ], "P_xyz": [ 1.353, 8.752, 0.453 ], "form": ".", "ssZp": 4.507, "Dp": 4.691, "splay_angle": 28.329, "splay_distance": 4.603, "splay_ratio": 0.249, "d22": null, "d64": null, "eta": 162.302, "theta": -142.433, "eta_prime": 178.886, "theta_prime": -144.951, "eta_base": -127.590, "theta_base": -135.024, "v0": 3.437, "v1": -26.239, "v2": 37.904, "v3": -36.941, "v4": 21.134, "amplitude": 39.011, "phase_angle": 13.681, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.597, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 213.168, 175.919, 182.631 ], "x_axis": [ -0.626, 0.780, 0.024 ], "y_axis": [ 0.682, 0.531, 0.503 ], "z_axis": [ 0.379, 0.331, -0.864 ], "quaternion": [ 0.102, 0.420, 0.869, 0.240 ] } }, { "index": 2374, "index_chain": 2374, "chain_name": "A", "nt_resnum": 2621, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2621", "linked_nts": [ "///A/2620", "///A/2622" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -51.916, "beta": 172.221, "gamma": 48.823, "delta": 77.310, "epsilon": -141.531, "zeta": -85.684, "epsilon_zeta": -55.846, "bb_type": "BI", "chi": -167.750, "glyco_bond": "anti", "C5prime_xyz": [ -1.757, 8.773, 0.932 ], "P_xyz": [ 0.673, 9.544, 1.488 ], "form": "A", "ssZp": 4.545, "Dp": 4.641, "splay_angle": 24.286, "splay_distance": 3.839, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 175.248, "theta": -153.521, "eta_prime": -175.303, "theta_prime": -149.289, "eta_base": -151.082, "theta_base": -119.723, "v0": -1.988, "v1": -21.821, "v2": 36.043, "v3": -38.251, "v4": 25.377, "amplitude": 38.750, "phase_angle": 21.544, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.804, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 213.049, 176.427, 178.058 ], "x_axis": [ -0.400, 0.820, 0.409 ], "y_axis": [ 0.837, 0.146, 0.527 ], "z_axis": [ 0.372, 0.554, -0.745 ], "quaternion": [ -0.012, 0.547, 0.757, 0.357 ] } }, { "index": 2375, "index_chain": 2375, "chain_name": "A", "nt_resnum": 2622, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2622", "linked_nts": [ "///A/2621", "///A/2623" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -46.479, "beta": 165.545, "gamma": 39.664, "delta": 78.968, "epsilon": -147.212, "zeta": -78.882, "epsilon_zeta": -68.330, "bb_type": "BI", "chi": -163.828, "glyco_bond": "anti", "C5prime_xyz": [ -1.533, 8.677, 0.745 ], "P_xyz": [ 0.997, 9.153, 1.170 ], "form": "A", "ssZp": 4.526, "Dp": 4.670, "splay_angle": 20.424, "splay_distance": 3.294, "splay_ratio": 0.182, "d22": 4.076, "d64": 4.242, "eta": 166.966, "theta": -149.121, "eta_prime": 177.570, "theta_prime": -146.642, "eta_base": -142.339, "theta_base": -120.571, "v0": 2.325, "v1": -25.468, "v2": 37.721, "v3": -37.397, "v4": 22.060, "amplitude": 39.099, "phase_angle": 15.257, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.473, "filter_rmsd": 0.099, "frame": { "rmsd": 0.008, "origin": [ 212.852, 178.905, 175.132 ], "x_axis": [ 0.062, 0.664, 0.745 ], "y_axis": [ 0.923, -0.323, 0.210 ], "z_axis": [ 0.380, 0.675, -0.633 ], "quaternion": [ -0.164, 0.710, 0.559, 0.396 ] } }, { "index": 2376, "index_chain": 2376, "chain_name": "A", "nt_resnum": 2623, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2623", "linked_nts": [ "///A/2622", "///A/2624" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop", "alpha": -51.464, "beta": 162.879, "gamma": 54.438, "delta": 81.650, "epsilon": -140.012, "zeta": -21.408, "epsilon_zeta": -118.604, "bb_type": "--", "chi": -161.632, "glyco_bond": "anti", "C5prime_xyz": [ -1.553, 8.837, 0.589 ], "P_xyz": [ 1.004, 9.345, 0.752 ], "form": ".", "ssZp": 4.320, "Dp": 4.545, "splay_angle": 23.957, "splay_distance": 4.401, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 175.471, "theta": -112.029, "eta_prime": -172.155, "theta_prime": -125.291, "eta_base": -134.947, "theta_base": -111.509, "v0": -2.438, "v1": -19.577, "v2": 32.853, "v3": -35.201, "v4": 23.757, "amplitude": 35.552, "phase_angle": 22.470, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.792, "filter_rmsd": 0.059, "frame": { "rmsd": 0.006, "origin": [ 212.499, 181.914, 173.841 ], "x_axis": [ 0.492, 0.323, 0.809 ], "y_axis": [ 0.804, -0.526, -0.278 ], "z_axis": [ 0.336, 0.786, -0.519 ], "quaternion": [ -0.334, 0.796, 0.354, 0.359 ] } }, { "index": 2377, "index_chain": 2377, "chain_name": "A", "nt_resnum": 2624, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2624", "linked_nts": [ "///A/2623", "///A/2625" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate", "alpha": -128.011, "beta": 95.703, "gamma": 168.768, "delta": 85.962, "epsilon": -97.202, "zeta": -55.023, "epsilon_zeta": -42.179, "bb_type": "--", "chi": -178.020, "glyco_bond": "anti", "C5prime_xyz": [ -1.225, 8.387, 1.609 ], "P_xyz": [ -1.238, 10.667, 0.349 ], "form": ".", "ssZp": 4.529, "Dp": 4.660, "splay_angle": 75.397, "splay_distance": 12.450, "splay_ratio": 0.615, "d22": null, "d64": null, "eta": -172.685, "theta": -142.151, "eta_prime": -166.341, "theta_prime": -148.932, "eta_base": -134.689, "theta_base": -177.794, "v0": 4.011, "v1": -23.643, "v2": 33.176, "v3": -31.824, "v4": 17.625, "amplitude": 33.923, "phase_angle": 12.049, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 213.067, 186.271, 174.111 ], "x_axis": [ 0.769, 0.158, 0.619 ], "y_axis": [ 0.585, -0.565, -0.582 ], "z_axis": [ 0.258, 0.810, -0.527 ], "quaternion": [ -0.411, 0.846, 0.220, 0.259 ] } }, { "index": 2378, "index_chain": 2378, "chain_name": "A", "nt_resnum": 2625, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2625", "linked_nts": [ "///A/2624", "///A/2626" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate", "alpha": -58.527, "beta": -174.598, "gamma": -152.027, "delta": 80.842, "epsilon": 148.591, "zeta": 41.278, "epsilon_zeta": 107.312, "bb_type": "--", "chi": 173.962, "glyco_bond": "anti", "C5prime_xyz": [ -1.700, 8.305, 1.950 ], "P_xyz": [ -0.825, 10.770, 1.862 ], "form": ".", "ssZp": 3.383, "Dp": 3.900, "splay_angle": 40.063, "splay_distance": 6.087, "splay_ratio": 0.345, "d22": null, "d64": null, "eta": -15.234, "theta": -126.086, "eta_prime": 3.535, "theta_prime": -117.851, "eta_base": 10.433, "theta_base": -62.472, "v0": 1.188, "v1": -23.105, "v2": 34.909, "v3": -35.241, "v4": 21.546, "amplitude": 36.471, "phase_angle": 16.827, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.108, "frame": { "rmsd": 0.008, "origin": [ 210.888, 194.917, 165.423 ], "x_axis": [ -0.379, -0.111, -0.919 ], "y_axis": [ 0.573, -0.807, -0.139 ], "z_axis": [ -0.726, -0.579, 0.369 ], "quaternion": [ -0.214, -0.515, -0.225, 0.799 ] } }, { "index": 2379, "index_chain": 2379, "chain_name": "A", "nt_resnum": 2626, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2626", "linked_nts": [ "///A/2625", "///A/2627" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,ribose-zipper,phosphate", "alpha": -154.602, "beta": -147.445, "gamma": 46.419, "delta": 82.541, "epsilon": -165.906, "zeta": -100.496, "epsilon_zeta": -65.410, "bb_type": "BI", "chi": -113.788, "glyco_bond": "anti", "C5prime_xyz": [ -1.602, 8.169, -2.064 ], "P_xyz": [ 0.903, 8.881, -2.331 ], "form": ".", "ssZp": 2.370, "Dp": 4.501, "splay_angle": 24.798, "splay_distance": 4.133, "splay_ratio": 0.231, "d22": null, "d64": null, "eta": 132.377, "theta": 179.149, "eta_prime": 172.241, "theta_prime": -177.168, "eta_base": -114.502, "theta_base": -163.626, "v0": 3.703, "v1": -24.879, "v2": 35.446, "v3": -34.293, "v4": 19.338, "amplitude": 36.368, "phase_angle": 12.932, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 207.614, 190.019, 163.892 ], "x_axis": [ 0.439, -0.824, -0.359 ], "y_axis": [ 0.424, -0.162, 0.891 ], "z_axis": [ -0.792, -0.543, 0.278 ], "quaternion": [ 0.623, 0.575, -0.174, -0.500 ] } }, { "index": 2380, "index_chain": 2380, "chain_name": "A", "nt_resnum": 2627, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2627", "linked_nts": [ "///A/2626", "///A/2628" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,ribose-zipper,phosphate", "alpha": -42.081, "beta": 150.554, "gamma": 49.039, "delta": 84.536, "epsilon": -120.944, "zeta": -37.731, "epsilon_zeta": -83.213, "bb_type": "--", "chi": -120.799, "glyco_bond": "anti", "C5prime_xyz": [ -1.281, 8.218, -1.679 ], "P_xyz": [ 1.094, 7.640, -2.637 ], "form": ".", "ssZp": 2.108, "Dp": 4.772, "splay_angle": 75.947, "splay_distance": 12.364, "splay_ratio": 0.616, "d22": null, "d64": null, "eta": -179.203, "theta": -49.546, "eta_prime": -177.119, "theta_prime": -50.471, "eta_base": -166.406, "theta_base": -43.077, "v0": 7.946, "v1": -27.751, "v2": 36.020, "v3": -32.427, "v4": 15.473, "amplitude": 36.237, "phase_angle": 6.282, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.405, "filter_rmsd": 0.040, "frame": { "rmsd": 0.006, "origin": [ 204.761, 188.446, 166.436 ], "x_axis": [ 0.511, -0.844, -0.161 ], "y_axis": [ 0.199, -0.066, 0.978 ], "z_axis": [ -0.836, -0.532, 0.135 ], "quaternion": [ 0.628, 0.600, -0.269, -0.415 ] } }, { "index": 2381, "index_chain": 2381, "chain_name": "A", "nt_resnum": 2628, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2628", "linked_nts": [ "///A/2627", "///A/2629" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop", "alpha": 165.707, "beta": -148.595, "gamma": -173.800, "delta": 82.173, "epsilon": -142.139, "zeta": -73.978, "epsilon_zeta": -68.161, "bb_type": "BI", "chi": -172.905, "glyco_bond": "anti", "C5prime_xyz": [ -1.358, 8.596, 1.300 ], "P_xyz": [ 0.128, 10.280, -0.046 ], "form": "A", "ssZp": 4.586, "Dp": 4.631, "splay_angle": 23.530, "splay_distance": 3.713, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": -176.447, "theta": -168.106, "eta_prime": -133.199, "theta_prime": -164.190, "eta_base": -88.887, "theta_base": -136.812, "v0": 2.376, "v1": -23.909, "v2": 35.208, "v3": -34.837, "v4": 20.493, "amplitude": 36.451, "phase_angle": 15.005, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.068, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 212.592, 181.989, 173.495 ], "x_axis": [ 0.459, 0.294, 0.839 ], "y_axis": [ -0.806, 0.534, 0.254 ], "z_axis": [ -0.373, -0.793, 0.482 ], "quaternion": [ 0.786, 0.333, -0.385, 0.350 ] } }, { "index": 2382, "index_chain": 2382, "chain_name": "A", "nt_resnum": 2629, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2629", "linked_nts": [ "///A/2628", "///A/2630" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.669, "beta": -173.205, "gamma": 38.551, "delta": 84.314, "epsilon": -148.079, "zeta": -80.132, "epsilon_zeta": -67.946, "bb_type": "BI", "chi": -167.943, "glyco_bond": "anti", "C5prime_xyz": [ -1.441, 8.577, 1.049 ], "P_xyz": [ 0.805, 8.936, 2.339 ], "form": "A", "ssZp": 4.455, "Dp": 4.546, "splay_angle": 22.640, "splay_distance": 3.583, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": 162.856, "theta": -151.684, "eta_prime": 172.945, "theta_prime": -146.880, "eta_base": -150.521, "theta_base": -126.293, "v0": 2.089, "v1": -22.892, "v2": 33.783, "v3": -33.575, "v4": 19.834, "amplitude": 35.023, "phase_angle": 15.292, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.588, "filter_rmsd": 0.038, "frame": { "rmsd": 0.007, "origin": [ 212.914, 178.737, 175.258 ], "x_axis": [ 0.076, 0.844, 0.531 ], "y_axis": [ -0.899, 0.288, -0.330 ], "z_axis": [ -0.431, -0.452, 0.781 ], "quaternion": [ 0.732, 0.042, -0.328, 0.595 ] } }, { "index": 2383, "index_chain": 2383, "chain_name": "A", "nt_resnum": 2630, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2630", "linked_nts": [ "///A/2629", "///A/2631" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart", "alpha": -61.037, "beta": 176.941, "gamma": 45.031, "delta": 81.773, "epsilon": -128.162, "zeta": 148.853, "epsilon_zeta": 82.985, "bb_type": "BII", "chi": -156.818, "glyco_bond": "anti", "C5prime_xyz": [ -1.277, 8.750, 0.340 ], "P_xyz": [ 1.280, 9.161, 0.732 ], "form": ".", "ssZp": 4.216, "Dp": 4.715, "splay_angle": 145.053, "splay_distance": 18.929, "splay_ratio": 0.954, "d22": null, "d64": null, "eta": 171.571, "theta": 142.481, "eta_prime": 178.334, "theta_prime": 137.096, "eta_base": -155.886, "theta_base": 168.306, "v0": 2.633, "v1": -24.425, "v2": 35.739, "v3": -35.202, "v4": 20.522, "amplitude": 36.933, "phase_angle": 14.607, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.827, "filter_rmsd": 0.062, "frame": { "rmsd": 0.005, "origin": [ 213.150, 176.659, 178.167 ], "x_axis": [ -0.348, 0.909, 0.231 ], "y_axis": [ -0.850, -0.202, -0.486 ], "z_axis": [ -0.395, -0.365, 0.843 ], "quaternion": [ 0.569, -0.053, -0.275, 0.774 ] } }, { "index": 2384, "index_chain": 2384, "chain_name": "A", "nt_resnum": 2631, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2631", "linked_nts": [ "///A/2630", "///A/2632" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,bulge,splayed-apart", "alpha": 30.402, "beta": 64.753, "gamma": -147.065, "delta": 144.765, "epsilon": -143.717, "zeta": 125.925, "epsilon_zeta": 90.358, "bb_type": "--", "chi": -107.582, "glyco_bond": "anti", "C5prime_xyz": [ -1.957, 8.211, -1.823 ], "P_xyz": [ -3.605, 9.326, -3.517 ], "form": ".", "ssZp": 1.773, "Dp": 1.907, "splay_angle": 122.048, "splay_distance": 18.569, "splay_ratio": 0.875, "d22": null, "d64": null, "eta": 48.137, "theta": 54.695, "eta_prime": 14.280, "theta_prime": 59.069, "eta_base": -44.188, "theta_base": 52.895, "v0": -19.480, "v1": 32.885, "v2": -33.021, "v3": 22.655, "v4": -2.196, "amplitude": 34.209, "phase_angle": 164.851, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 201.508, 161.755, 178.975 ], "x_axis": [ -0.833, -0.112, -0.542 ], "y_axis": [ 0.294, 0.741, -0.604 ], "z_axis": [ 0.470, -0.662, -0.584 ], "quaternion": [ 0.285, 0.051, 0.889, -0.356 ] } }, { "index": 2385, "index_chain": 2385, "chain_name": "A", "nt_resnum": 2632, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2632", "linked_nts": [ "///A/2631", "///A/2633" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart", "alpha": 47.902, "beta": 135.077, "gamma": 178.343, "delta": 81.483, "epsilon": -143.784, "zeta": -78.600, "epsilon_zeta": -65.184, "bb_type": "BI", "chi": -179.214, "glyco_bond": "anti", "C5prime_xyz": [ -1.626, 8.529, 1.623 ], "P_xyz": [ -1.315, 11.048, 0.962 ], "form": "A", "ssZp": 4.550, "Dp": 4.579, "splay_angle": 23.917, "splay_distance": 3.772, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 64.828, "theta": 163.058, "eta_prime": 45.056, "theta_prime": 179.344, "eta_base": 52.719, "theta_base": -148.345, "v0": -0.176, "v1": -21.658, "v2": 34.069, "v3": -35.142, "v4": 22.275, "amplitude": 36.014, "phase_angle": 18.917, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 213.811, 175.315, 182.068 ], "x_axis": [ -0.737, 0.669, -0.090 ], "y_axis": [ -0.465, -0.600, -0.651 ], "z_axis": [ -0.490, -0.438, 0.754 ], "quaternion": [ 0.323, -0.165, -0.310, 0.879 ] } }, { "index": 2386, "index_chain": 2386, "chain_name": "A", "nt_resnum": 2633, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2633", "linked_nts": [ "///A/2632", "///A/2634" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -58.110, "beta": 177.885, "gamma": 43.873, "delta": 82.500, "epsilon": -145.408, "zeta": -80.041, "epsilon_zeta": -65.367, "bb_type": "BI", "chi": -163.526, "glyco_bond": "anti", "C5prime_xyz": [ -1.466, 8.657, 0.755 ], "P_xyz": [ 0.999, 9.120, 1.486 ], "form": "A", "ssZp": 4.452, "Dp": 4.611, "splay_angle": 23.668, "splay_distance": 3.810, "splay_ratio": 0.207, "d22": 4.429, "d64": 4.695, "eta": 169.933, "theta": -148.606, "eta_prime": -179.859, "theta_prime": -145.407, "eta_base": -146.377, "theta_base": -124.041, "v0": 1.962, "v1": -23.454, "v2": 34.810, "v3": -34.702, "v4": 20.651, "amplitude": 36.143, "phase_angle": 15.612, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.795, "filter_rmsd": 0.100, "frame": { "rmsd": 0.006, "origin": [ 213.088, 175.191, 185.768 ], "x_axis": [ -0.844, 0.267, -0.465 ], "y_axis": [ 0.007, -0.862, -0.507 ], "z_axis": [ -0.536, -0.432, 0.726 ], "quaternion": [ 0.070, -0.270, -0.253, 0.926 ] } }, { "index": 2387, "index_chain": 2387, "chain_name": "A", "nt_resnum": 2634, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2634", "linked_nts": [ "///A/2633", "///A/2635" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -56.199, "beta": 162.269, "gamma": 56.648, "delta": 79.738, "epsilon": -146.800, "zeta": -80.592, "epsilon_zeta": -66.208, "bb_type": "BI", "chi": -162.536, "glyco_bond": "anti", "C5prime_xyz": [ -1.733, 8.776, 0.649 ], "P_xyz": [ 0.796, 9.415, 0.663 ], "form": "A", "ssZp": 4.418, "Dp": 4.578, "splay_angle": 23.831, "splay_distance": 3.821, "splay_ratio": 0.208, "d22": 4.504, "d64": 4.351, "eta": 171.215, "theta": -151.674, "eta_prime": -175.159, "theta_prime": -152.497, "eta_base": -142.034, "theta_base": -133.644, "v0": -1.430, "v1": -21.703, "v2": 35.256, "v3": -37.094, "v4": 24.266, "amplitude": 37.699, "phase_angle": 20.739, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.855, "filter_rmsd": 0.100, "frame": { "rmsd": 0.007, "origin": [ 210.863, 175.258, 188.860 ], "x_axis": [ -0.724, -0.140, -0.676 ], "y_axis": [ 0.368, -0.907, -0.206 ], "z_axis": [ -0.584, -0.398, 0.708 ], "quaternion": [ -0.139, -0.345, -0.165, 0.913 ] } }, { "index": 2388, "index_chain": 2388, "chain_name": "A", "nt_resnum": 2635, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2635", "linked_nts": [ "///A/2634", "///A/2636" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack", "alpha": -69.606, "beta": 176.704, "gamma": 50.524, "delta": 80.932, "epsilon": -151.896, "zeta": -66.667, "epsilon_zeta": -85.229, "bb_type": "BI", "chi": -164.285, "glyco_bond": "anti", "C5prime_xyz": [ -1.415, 8.754, 0.756 ], "P_xyz": [ 1.105, 9.268, 1.252 ], "form": "A", "ssZp": 4.478, "Dp": 4.584, "splay_angle": 21.230, "splay_distance": 3.409, "splay_ratio": 0.187, "d22": null, "d64": null, "eta": 163.023, "theta": -143.173, "eta_prime": 170.932, "theta_prime": -140.271, "eta_base": -158.177, "theta_base": -111.501, "v0": 0.736, "v1": -23.113, "v2": 35.393, "v3": -35.959, "v4": 22.201, "amplitude": 37.108, "phase_angle": 17.484, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.914, "filter_rmsd": 0.061, "frame": { "rmsd": 0.006, "origin": [ 208.063, 175.282, 191.460 ], "x_axis": [ -0.203, -0.412, -0.888 ], "y_axis": [ 0.675, -0.716, 0.178 ], "z_axis": [ -0.710, -0.563, 0.424 ], "quaternion": [ -0.355, -0.522, -0.126, 0.765 ] } }, { "index": 2389, "index_chain": 2389, "chain_name": "A", "nt_resnum": 2636, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2636", "linked_nts": [ "///A/2635", "///A/2637" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop", "alpha": -70.655, "beta": -170.933, "gamma": 48.281, "delta": 81.685, "epsilon": -176.862, "zeta": -82.958, "epsilon_zeta": -93.905, "bb_type": "BI", "chi": -142.361, "glyco_bond": "anti", "C5prime_xyz": [ -1.357, 8.746, -0.526 ], "P_xyz": [ 1.192, 9.326, -0.412 ], "form": ".", "ssZp": 3.902, "Dp": 4.390, "splay_angle": 25.813, "splay_distance": 4.098, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": 165.693, "theta": -138.323, "eta_prime": -179.237, "theta_prime": -139.829, "eta_base": -137.945, "theta_base": -102.165, "v0": 2.153, "v1": -23.875, "v2": 35.338, "v3": -35.049, "v4": 20.760, "amplitude": 36.639, "phase_angle": 15.314, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.853, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 204.902, 174.008, 191.387 ], "x_axis": [ 0.304, -0.694, -0.653 ], "y_axis": [ 0.496, -0.470, 0.730 ], "z_axis": [ -0.813, -0.546, 0.201 ], "quaternion": [ 0.509, 0.627, -0.079, -0.585 ] } }, { "index": 2390, "index_chain": 2390, "chain_name": "A", "nt_resnum": 2637, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2637", "linked_nts": [ "///A/2636", "///A/2638" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-pair-contact,ss-non-loop,splayed-apart", "alpha": 163.639, "beta": -134.159, "gamma": 155.689, "delta": 82.575, "epsilon": -115.165, "zeta": -175.642, "epsilon_zeta": 60.477, "bb_type": "BII", "chi": -167.307, "glyco_bond": "anti", "C5prime_xyz": [ -1.149, 8.578, 0.983 ], "P_xyz": [ 0.863, 9.090, -0.612 ], "form": ".", "ssZp": 4.499, "Dp": 4.786, "splay_angle": 120.724, "splay_distance": 17.482, "splay_ratio": 0.871, "d22": null, "d64": null, "eta": 168.439, "theta": 147.101, "eta_prime": -172.520, "theta_prime": 153.138, "eta_base": -119.028, "theta_base": 134.539, "v0": 5.645, "v1": -26.766, "v2": 36.623, "v3": -34.360, "v4": 18.167, "amplitude": 37.201, "phase_angle": 10.119, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.143, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 202.827, 170.535, 190.739 ], "x_axis": [ 0.543, -0.836, -0.081 ], "y_axis": [ 0.116, -0.021, 0.993 ], "z_axis": [ -0.831, -0.549, 0.086 ], "quaternion": [ 0.634, 0.608, -0.296, -0.375 ] } }, { "index": 2391, "index_chain": 2391, "chain_name": "A", "nt_resnum": 2638, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2638", "linked_nts": [ "///A/2637", "///A/2639" ], "nt_type": "RNA", "dbn": "a", "summary": "pseudoknotted,anti,~C2'-endo,non-stack,isolated-canonical,splayed-apart", "alpha": 86.729, "beta": 145.659, "gamma": -132.034, "delta": 144.101, "epsilon": -63.396, "zeta": -146.992, "epsilon_zeta": 83.596, "bb_type": "--", "chi": -101.561, "glyco_bond": "anti", "C5prime_xyz": [ -2.382, 8.074, -2.109 ], "P_xyz": [ -2.828, 9.893, -3.949 ], "form": ".", "ssZp": 0.012, "Dp": 0.188, "splay_angle": 106.223, "splay_distance": 14.714, "splay_ratio": 0.801, "d22": 8.175, "d64": 9.429, "eta": -162.367, "theta": -158.135, "eta_prime": 160.755, "theta_prime": -132.457, "eta_base": 121.930, "theta_base": -90.406, "v0": -22.944, "v1": 35.904, "v2": -34.496, "v3": 22.135, "v4": 0.291, "amplitude": 36.532, "phase_angle": 160.785, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.003, "origin": [ 190.066, 176.585, 201.045 ], "x_axis": [ 0.087, 0.766, -0.637 ], "y_axis": [ 0.558, -0.567, -0.606 ], "z_axis": [ -0.825, -0.302, -0.477 ], "quaternion": [ -0.104, 0.730, 0.453, -0.501 ] } }, { "index": 2392, "index_chain": 2392, "chain_name": "A", "nt_resnum": 2639, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2639", "linked_nts": [ "///A/2638", "///A/2640" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,ss-non-loop,splayed-apart", "alpha": -51.267, "beta": 146.401, "gamma": 62.648, "delta": 149.123, "epsilon": -92.034, "zeta": 112.170, "epsilon_zeta": 155.796, "bb_type": "--", "chi": -128.585, "glyco_bond": "anti", "C5prime_xyz": [ -1.456, 8.599, -0.703 ], "P_xyz": [ 1.139, 8.313, -0.364 ], "form": ".", "ssZp": 0.657, "Dp": 0.855, "splay_angle": 70.442, "splay_distance": 12.135, "splay_ratio": 0.577, "d22": 9.418, "d64": 11.742, "eta": -150.748, "theta": 157.024, "eta_prime": -110.253, "theta_prime": 130.830, "eta_base": -105.779, "theta_base": 149.286, "v0": -16.589, "v1": 32.153, "v2": -34.592, "v3": 25.922, "v4": -6.067, "amplitude": 35.018, "phase_angle": 171.057, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 192.762, 165.327, 191.962 ], "x_axis": [ 0.828, 0.545, -0.133 ], "y_axis": [ 0.059, 0.150, 0.987 ], "z_axis": [ 0.558, -0.825, 0.092 ], "quaternion": [ 0.719, 0.630, 0.240, 0.169 ] } }, { "index": 2393, "index_chain": 2393, "chain_name": "A", "nt_resnum": 2640, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2640", "linked_nts": [ "///A/2639", "///A/2641" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack", "alpha": 23.518, "beta": 152.037, "gamma": -53.284, "delta": 84.407, "epsilon": -157.171, "zeta": -71.898, "epsilon_zeta": -85.274, "bb_type": "BI", "chi": -143.709, "glyco_bond": "anti", "C5prime_xyz": [ -1.478, 8.745, -0.432 ], "P_xyz": [ -0.117, 10.720, 0.587 ], "form": ".", "ssZp": 3.925, "Dp": 4.526, "splay_angle": 26.021, "splay_distance": 4.209, "splay_ratio": 0.225, "d22": 4.682, "d64": 4.730, "eta": -165.385, "theta": -175.834, "eta_prime": 176.017, "theta_prime": -163.482, "eta_base": -174.778, "theta_base": -127.961, "v0": 2.232, "v1": -23.184, "v2": 34.044, "v3": -33.736, "v4": 19.908, "amplitude": 35.258, "phase_angle": 15.078, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.008, "origin": [ 181.239, 161.982, 193.776 ], "x_axis": [ 0.543, -0.685, -0.486 ], "y_axis": [ 0.744, 0.123, 0.657 ], "z_axis": [ -0.390, -0.718, 0.576 ], "quaternion": [ 0.749, 0.459, 0.032, -0.477 ] } }, { "index": 2394, "index_chain": 2394, "chain_name": "A", "nt_resnum": 2641, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2641", "linked_nts": [ "///A/2640", "///A/2642" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": -76.232, "beta": 165.287, "gamma": 75.826, "delta": 81.931, "epsilon": -144.231, "zeta": -147.578, "epsilon_zeta": 3.347, "bb_type": "--", "chi": -151.402, "glyco_bond": "anti", "C5prime_xyz": [ -1.467, 8.835, -0.009 ], "P_xyz": [ 0.978, 9.234, -0.882 ], "form": ".", "ssZp": 4.142, "Dp": 4.621, "splay_angle": 116.200, "splay_distance": 16.564, "splay_ratio": 0.849, "d22": 10.660, "d64": 13.514, "eta": 173.831, "theta": 155.443, "eta_prime": -171.256, "theta_prime": 147.294, "eta_base": -135.440, "theta_base": 119.840, "v0": 0.731, "v1": -22.689, "v2": 34.683, "v3": -35.201, "v4": 21.756, "amplitude": 36.354, "phase_angle": 17.442, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.271, "filter_rmsd": 0.062, "frame": { "rmsd": 0.003, "origin": [ 179.869, 158.296, 195.277 ], "x_axis": [ 0.839, -0.532, -0.112 ], "y_axis": [ 0.354, 0.378, 0.855 ], "z_axis": [ -0.413, -0.758, 0.506 ], "quaternion": [ 0.825, 0.489, -0.091, -0.268 ] } }, { "index": 2395, "index_chain": 2395, "chain_name": "A", "nt_resnum": 2642, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2642", "linked_nts": [ "///A/2641", "///A/2643" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart", "alpha": -161.508, "beta": -158.569, "gamma": 42.234, "delta": 143.947, "epsilon": -95.317, "zeta": -78.224, "epsilon_zeta": -17.094, "bb_type": "--", "chi": -136.316, "glyco_bond": "anti", "C5prime_xyz": [ -2.054, 8.772, -0.433 ], "P_xyz": [ -0.487, 10.121, 1.182 ], "form": ".", "ssZp": 0.842, "Dp": 0.851, "splay_angle": 131.191, "splay_distance": 17.566, "splay_ratio": 0.911, "d22": null, "d64": null, "eta": 113.155, "theta": -66.191, "eta_prime": 106.662, "theta_prime": -80.969, "eta_base": 86.789, "theta_base": -58.307, "v0": -24.861, "v1": 37.740, "v2": -35.423, "v3": 21.972, "v4": 1.607, "amplitude": 37.988, "phase_angle": 158.823, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.099, "frame": { "rmsd": 0.007, "origin": [ 170.759, 165.000, 207.378 ], "x_axis": [ 0.528, 0.849, 0.030 ], "y_axis": [ 0.839, -0.515, -0.174 ], "z_axis": [ -0.132, 0.117, -0.984 ], "quaternion": [ -0.083, 0.870, 0.485, -0.030 ] } }, { "index": 2396, "index_chain": 2396, "chain_name": "A", "nt_resnum": 2643, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2643", "linked_nts": [ "///A/2642", "///A/2644" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart", "alpha": -67.022, "beta": -128.733, "gamma": 68.454, "delta": 146.555, "epsilon": -101.902, "zeta": 120.862, "epsilon_zeta": 137.236, "bb_type": "--", "chi": -90.737, "glyco_bond": "anti", "C5prime_xyz": [ -2.694, 7.776, -2.417 ], "P_xyz": [ -0.420, 9.051, -2.168 ], "form": ".", "ssZp": 0.897, "Dp": 1.019, "splay_angle": 44.001, "splay_distance": 7.208, "splay_ratio": 0.381, "d22": null, "d64": null, "eta": -139.362, "theta": 145.646, "eta_prime": -95.865, "theta_prime": 133.031, "eta_base": -101.526, "theta_base": 145.083, "v0": -23.811, "v1": 37.379, "v2": -35.874, "v3": 23.021, "v4": 0.285, "amplitude": 37.988, "phase_angle": 160.798, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.559, "filter_rmsd": 0.039, "frame": { "rmsd": 0.007, "origin": [ 177.820, 152.508, 197.247 ], "x_axis": [ 0.902, -0.063, 0.428 ], "y_axis": [ -0.418, 0.128, 0.899 ], "z_axis": [ -0.112, -0.990, 0.089 ], "quaternion": [ 0.728, 0.649, -0.185, 0.122 ] } }, { "index": 2397, "index_chain": 2397, "chain_name": "A", "nt_resnum": 2644, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2644", "linked_nts": [ "///A/2643", "///A/2645" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,helix,stem-end,coaxial-stack,multiplet,internal-loop", "alpha": 175.766, "beta": -149.175, "gamma": 68.106, "delta": 83.225, "epsilon": -145.860, "zeta": -71.356, "epsilon_zeta": -74.504, "bb_type": "BI", "chi": -172.288, "glyco_bond": "anti", "C5prime_xyz": [ -1.240, 8.505, 1.278 ], "P_xyz": [ 1.189, 8.366, 2.255 ], "form": "A", "ssZp": 4.607, "Dp": 4.639, "splay_angle": 23.297, "splay_distance": 3.659, "splay_ratio": 0.204, "d22": 4.286, "d64": 4.300, "eta": 139.234, "theta": -136.661, "eta_prime": 124.515, "theta_prime": -134.295, "eta_base": 140.953, "theta_base": -104.674, "v0": 3.690, "v1": -24.863, "v2": 35.439, "v3": -34.252, "v4": 19.301, "amplitude": 36.358, "phase_angle": 12.910, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6g", "suiteness": 0.043, "filter_rmsd": 0.104, "frame": { "rmsd": 0.006, "origin": [ 171.411, 153.024, 193.989 ], "x_axis": [ 0.918, 0.041, 0.395 ], "y_axis": [ -0.392, 0.258, 0.883 ], "z_axis": [ -0.065, -0.965, 0.253 ], "quaternion": [ 0.779, 0.593, -0.148, 0.139 ] } }, { "index": 2398, "index_chain": 2398, "chain_name": "A", "nt_resnum": 2645, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2645", "linked_nts": [ "///A/2644", "///A/2646" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -59.622, "beta": 174.346, "gamma": 47.522, "delta": 80.722, "epsilon": -146.978, "zeta": -72.380, "epsilon_zeta": -74.598, "bb_type": "BI", "chi": -164.565, "glyco_bond": "anti", "C5prime_xyz": [ -1.246, 8.720, 0.803 ], "P_xyz": [ 1.298, 9.050, 1.328 ], "form": "A", "ssZp": 4.501, "Dp": 4.634, "splay_angle": 20.084, "splay_distance": 3.246, "splay_ratio": 0.177, "d22": 4.052, "d64": 4.210, "eta": 167.596, "theta": -143.930, "eta_prime": -177.631, "theta_prime": -142.464, "eta_base": -131.616, "theta_base": -115.716, "v0": 1.926, "v1": -24.269, "v2": 36.217, "v3": -36.078, "v4": 21.544, "amplitude": 37.629, "phase_angle": 15.745, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.915, "filter_rmsd": 0.062, "frame": { "rmsd": 0.005, "origin": [ 172.769, 149.626, 193.981 ], "x_axis": [ 0.491, 0.252, 0.834 ], "y_axis": [ -0.871, 0.160, 0.464 ], "z_axis": [ -0.016, -0.954, 0.298 ], "quaternion": [ 0.698, 0.508, -0.305, 0.402 ] } }, { "index": 2399, "index_chain": 2399, "chain_name": "A", "nt_resnum": 2646, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2646", "linked_nts": [ "///A/2645", "///A/2647" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -60.778, "beta": 165.183, "gamma": 54.990, "delta": 78.375, "epsilon": -140.370, "zeta": -61.698, "epsilon_zeta": -78.672, "bb_type": "BI", "chi": -163.110, "glyco_bond": "anti", "C5prime_xyz": [ -1.517, 8.796, 0.673 ], "P_xyz": [ 1.026, 9.372, 0.669 ], "form": ".", "ssZp": 4.473, "Dp": 4.675, "splay_angle": 28.818, "splay_distance": 4.654, "splay_ratio": 0.251, "d22": null, "d64": null, "eta": 166.982, "theta": -129.771, "eta_prime": -178.391, "theta_prime": -127.510, "eta_base": -136.395, "theta_base": -85.381, "v0": 0.041, "v1": -23.796, "v2": 37.185, "v3": -38.158, "v4": 24.028, "amplitude": 39.217, "phase_angle": 18.526, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.943, "filter_rmsd": 0.058, "frame": { "rmsd": 0.009, "origin": [ 174.404, 146.995, 194.952 ], "x_axis": [ -0.026, 0.335, 0.942 ], "y_axis": [ -0.995, -0.103, 0.009 ], "z_axis": [ 0.100, -0.937, 0.336 ], "quaternion": [ 0.549, 0.431, -0.383, 0.605 ] } }, { "index": 2400, "index_chain": 2400, "chain_name": "A", "nt_resnum": 2647, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2647", "linked_nts": [ "///A/2646", "///A/2648" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -60.724, "beta": 177.175, "gamma": 48.892, "delta": 79.599, "epsilon": -171.210, "zeta": -89.066, "epsilon_zeta": -82.145, "bb_type": "BI", "chi": -159.016, "glyco_bond": "anti", "C5prime_xyz": [ -1.456, 8.857, 0.461 ], "P_xyz": [ 1.027, 9.494, 0.956 ], "form": "A", "ssZp": 4.264, "Dp": 4.369, "splay_angle": 21.330, "splay_distance": 3.373, "splay_ratio": 0.186, "d22": null, "d64": null, "eta": 164.720, "theta": -141.918, "eta_prime": -172.503, "theta_prime": -143.423, "eta_base": -110.362, "theta_base": -110.987, "v0": -1.780, "v1": -20.817, "v2": 34.326, "v3": -36.350, "v4": 24.057, "amplitude": 36.864, "phase_angle": 21.385, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.879, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 174.589, 145.298, 199.281 ], "x_axis": [ -0.772, 0.407, 0.489 ], "y_axis": [ -0.631, -0.397, -0.666 ], "z_axis": [ -0.077, -0.823, 0.563 ], "quaternion": [ 0.314, 0.124, -0.451, 0.826 ] } }, { "index": 2401, "index_chain": 2401, "chain_name": "A", "nt_resnum": 2648, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2648", "linked_nts": [ "///A/2647", "///A/2649" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 173.349, "beta": -134.861, "gamma": 146.063, "delta": 78.466, "epsilon": -114.118, "zeta": -96.050, "epsilon_zeta": -18.068, "bb_type": "--", "chi": -164.663, "glyco_bond": "anti", "C5prime_xyz": [ -1.435, 8.690, 0.813 ], "P_xyz": [ 0.713, 9.167, -0.570 ], "form": "A", "ssZp": 4.349, "Dp": 4.738, "splay_angle": 29.360, "splay_distance": 4.783, "splay_ratio": 0.255, "d22": 4.360, "d64": 4.387, "eta": 164.416, "theta": -140.455, "eta_prime": 179.314, "theta_prime": -141.080, "eta_base": -135.704, "theta_base": -121.357, "v0": 1.492, "v1": -24.637, "v2": 37.267, "v3": -37.485, "v4": 22.649, "amplitude": 38.870, "phase_angle": 16.514, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.100, "frame": { "rmsd": 0.008, "origin": [ 174.057, 143.543, 202.111 ], "x_axis": [ -0.994, 0.082, 0.076 ], "y_axis": [ -0.112, -0.699, -0.706 ], "z_axis": [ -0.004, -0.710, 0.704 ], "quaternion": [ 0.052, 0.019, -0.384, 0.921 ] } }, { "index": 2402, "index_chain": 2402, "chain_name": "A", "nt_resnum": 2649, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2649", "linked_nts": [ "///A/2648", "///A/2650" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -36.219, "beta": 163.982, "gamma": 31.194, "delta": 80.431, "epsilon": -169.328, "zeta": -82.271, "epsilon_zeta": -87.057, "bb_type": "BI", "chi": -151.049, "glyco_bond": "anti", "C5prime_xyz": [ -1.643, 8.843, -0.018 ], "P_xyz": [ 0.819, 9.593, 0.378 ], "form": "A", "ssZp": 4.122, "Dp": 4.394, "splay_angle": 21.912, "splay_distance": 3.736, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 163.325, "theta": -136.954, "eta_prime": 177.751, "theta_prime": -145.076, "eta_base": -147.773, "theta_base": -122.372, "v0": -1.681, "v1": -21.004, "v2": 34.425, "v3": -36.385, "v4": 23.997, "amplitude": 36.920, "phase_angle": 21.183, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.025, "filter_rmsd": 0.057, "frame": { "rmsd": 0.009, "origin": [ 172.102, 141.287, 205.849 ], "x_axis": [ -0.766, 0.072, -0.639 ], "y_axis": [ 0.455, -0.642, -0.617 ], "z_axis": [ -0.455, -0.763, 0.459 ], "quaternion": [ -0.113, -0.323, -0.408, 0.847 ] } }, { "index": 2403, "index_chain": 2403, "chain_name": "A", "nt_resnum": 2650, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2650", "linked_nts": [ "///A/2649", "///A/2651" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": 153.744, "beta": -151.054, "gamma": 170.501, "delta": 81.106, "epsilon": -130.664, "zeta": -79.300, "epsilon_zeta": -51.364, "bb_type": "BI", "chi": 176.277, "glyco_bond": "anti", "C5prime_xyz": [ -1.611, 8.364, 1.867 ], "P_xyz": [ 0.301, 9.937, 1.057 ], "form": "A", "ssZp": 4.640, "Dp": 4.667, "splay_angle": 25.944, "splay_distance": 4.165, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": 162.296, "theta": -155.365, "eta_prime": 175.565, "theta_prime": -152.721, "eta_base": -143.852, "theta_base": -122.012, "v0": 0.977, "v1": -23.080, "v2": 35.213, "v3": -35.636, "v4": 21.848, "amplitude": 36.850, "phase_angle": 17.141, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.737, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 169.093, 139.905, 207.578 ], "x_axis": [ -0.335, -0.035, -0.942 ], "y_axis": [ 0.762, -0.598, -0.249 ], "z_axis": [ -0.554, -0.801, 0.227 ], "quaternion": [ -0.271, -0.509, -0.357, 0.735 ] } }, { "index": 2404, "index_chain": 2404, "chain_name": "A", "nt_resnum": 2651, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2651", "linked_nts": [ "///A/2650", "///A/2652" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -47.427, "beta": 171.362, "gamma": 40.006, "delta": 80.376, "epsilon": -172.937, "zeta": -76.659, "epsilon_zeta": -96.278, "bb_type": "BI", "chi": -165.642, "glyco_bond": "anti", "C5prime_xyz": [ -1.534, 8.759, 0.823 ], "P_xyz": [ 0.895, 9.348, 1.555 ], "form": ".", "ssZp": 4.376, "Dp": 4.394, "splay_angle": 21.334, "splay_distance": 3.939, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 165.529, "theta": -138.019, "eta_prime": -176.571, "theta_prime": -148.454, "eta_base": -129.978, "theta_base": -143.494, "v0": -1.413, "v1": -21.256, "v2": 34.538, "v3": -36.367, "v4": 23.822, "amplitude": 36.942, "phase_angle": 20.785, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.494, "filter_rmsd": 0.057, "frame": { "rmsd": 0.010, "origin": [ 165.338, 138.105, 207.669 ], "x_axis": [ 0.234, -0.345, -0.909 ], "y_axis": [ 0.830, -0.416, 0.372 ], "z_axis": [ -0.506, -0.841, 0.189 ], "quaternion": [ 0.502, 0.604, 0.201, -0.585 ] } }, { "index": 2405, "index_chain": 2405, "chain_name": "A", "nt_resnum": 2652, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2652", "linked_nts": [ "///A/2651", "///A/2653" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 146.214, "beta": -160.090, "gamma": -172.460, "delta": 81.775, "epsilon": -146.328, "zeta": -74.565, "epsilon_zeta": -71.763, "bb_type": "BI", "chi": 177.612, "glyco_bond": "anti", "C5prime_xyz": [ -1.375, 8.371, 1.794 ], "P_xyz": [ 0.067, 10.401, 0.972 ], "form": "A", "ssZp": 4.651, "Dp": 4.660, "splay_angle": 25.551, "splay_distance": 3.886, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 171.870, "theta": -176.115, "eta_prime": -178.958, "theta_prime": -168.312, "eta_base": -155.274, "theta_base": -136.657, "v0": 3.008, "v1": -25.107, "v2": 36.422, "v3": -35.664, "v4": 20.615, "amplitude": 37.554, "phase_angle": 14.104, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.805, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 161.473, 137.480, 207.239 ], "x_axis": [ 0.418, -0.546, -0.726 ], "y_axis": [ 0.661, -0.365, 0.655 ], "z_axis": [ -0.623, -0.754, 0.208 ], "quaternion": [ 0.561, 0.627, 0.046, -0.538 ] } }, { "index": 2406, "index_chain": 2406, "chain_name": "A", "nt_resnum": 2653, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2653", "linked_nts": [ "///A/2652", "///A/2654" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor", "alpha": -73.685, "beta": 176.122, "gamma": 63.027, "delta": 84.257, "epsilon": -161.707, "zeta": -66.842, "epsilon_zeta": -94.864, "bb_type": "BI", "chi": -174.521, "glyco_bond": "anti", "C5prime_xyz": [ -1.384, 8.499, 1.401 ], "P_xyz": [ 1.178, 8.701, 1.911 ], "form": "A", "ssZp": 4.449, "Dp": 4.497, "splay_angle": 21.917, "splay_distance": 3.776, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 168.666, "theta": -120.281, "eta_prime": -175.728, "theta_prime": -129.129, "eta_base": -133.663, "theta_base": -104.068, "v0": 3.663, "v1": -24.418, "v2": 34.673, "v3": -33.545, "v4": 18.865, "amplitude": 35.562, "phase_angle": 12.843, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.795, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 158.275, 135.453, 206.363 ], "x_axis": [ 0.740, -0.634, -0.226 ], "y_axis": [ 0.340, 0.063, 0.938 ], "z_axis": [ -0.580, -0.771, 0.262 ], "quaternion": [ 0.719, 0.595, -0.123, -0.339 ] } }, { "index": 2407, "index_chain": 2407, "chain_name": "A", "nt_resnum": 2654, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2654", "linked_nts": [ "///A/2653", "///A/2655" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,A-minor", "alpha": -178.718, "beta": -163.586, "gamma": 150.523, "delta": 81.395, "epsilon": -107.042, "zeta": -96.217, "epsilon_zeta": -10.825, "bb_type": "--", "chi": -174.389, "glyco_bond": "anti", "C5prime_xyz": [ -1.525, 8.673, 1.380 ], "P_xyz": [ 0.658, 9.903, 0.665 ], "form": ".", "ssZp": 4.318, "Dp": 4.519, "splay_angle": 19.312, "splay_distance": 3.122, "splay_ratio": 0.169, "d22": null, "d64": null, "eta": 167.846, "theta": -150.822, "eta_prime": -175.774, "theta_prime": -147.350, "eta_base": -131.389, "theta_base": -99.379, "v0": -1.636, "v1": -20.212, "v2": 33.186, "v3": -35.115, "v4": 23.175, "amplitude": 35.606, "phase_angle": 21.248, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.025, "filter_rmsd": 0.015, "frame": { "rmsd": 0.015, "origin": [ 157.146, 132.167, 204.887 ], "x_axis": [ 0.811, -0.437, 0.389 ], "y_axis": [ -0.241, 0.357, 0.903 ], "z_axis": [ -0.533, -0.826, 0.184 ], "quaternion": [ 0.767, 0.563, -0.301, -0.064 ] } }, { "index": 2408, "index_chain": 2408, "chain_name": "A", "nt_resnum": 2655, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2655", "linked_nts": [ "///A/2654", "///A/2656" ], "nt_type": "RNA", "dbn": "[", "summary": "pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,multiplet", "alpha": -53.986, "beta": 133.356, "gamma": 59.485, "delta": 79.560, "epsilon": -154.754, "zeta": -77.683, "epsilon_zeta": -77.071, "bb_type": "BI", "chi": -160.008, "glyco_bond": "anti", "C5prime_xyz": [ -1.599, 8.849, 0.476 ], "P_xyz": [ 0.891, 9.022, -0.276 ], "form": "A", "ssZp": 4.380, "Dp": 4.540, "splay_angle": 29.103, "splay_distance": 4.545, "splay_ratio": 0.251, "d22": null, "d64": null, "eta": 149.415, "theta": -146.451, "eta_prime": 174.644, "theta_prime": -151.763, "eta_base": -120.095, "theta_base": -127.099, "v0": -1.999, "v1": -21.386, "v2": 35.297, "v3": -37.412, "v4": 24.843, "amplitude": 37.946, "phase_angle": 21.535, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.911, "filter_rmsd": 0.060, "frame": { "rmsd": 0.009, "origin": [ 156.730, 129.301, 206.053 ], "x_axis": [ 0.478, -0.101, 0.872 ], "y_axis": [ -0.793, 0.378, 0.478 ], "z_axis": [ -0.378, -0.920, 0.101 ], "quaternion": [ 0.699, 0.500, -0.447, 0.247 ] } }, { "index": 2409, "index_chain": 2409, "chain_name": "A", "nt_resnum": 2656, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2656", "linked_nts": [ "///A/2655", "///A/2657" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop", "alpha": -57.256, "beta": 167.534, "gamma": 57.508, "delta": 85.224, "epsilon": -124.725, "zeta": -87.681, "epsilon_zeta": -37.044, "bb_type": "--", "chi": -177.637, "glyco_bond": "anti", "C5prime_xyz": [ -1.635, 8.560, 1.538 ], "P_xyz": [ 0.839, 8.757, 2.372 ], "form": ".", "ssZp": 4.413, "Dp": 4.497, "splay_angle": 22.852, "splay_distance": 3.637, "splay_ratio": 0.198, "d22": null, "d64": null, "eta": -177.249, "theta": -134.561, "eta_prime": -166.924, "theta_prime": -132.411, "eta_base": -128.949, "theta_base": -98.011, "v0": -1.949, "v1": -18.634, "v2": 30.916, "v3": -32.946, "v4": 22.026, "amplitude": 33.325, "phase_angle": 21.919, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.870, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 156.332, 124.851, 206.888 ], "x_axis": [ 0.108, 0.386, 0.916 ], "y_axis": [ -0.819, 0.556, -0.138 ], "z_axis": [ -0.563, -0.736, 0.376 ], "quaternion": [ 0.714, 0.209, -0.518, 0.422 ] } }, { "index": 2410, "index_chain": 2410, "chain_name": "A", "nt_resnum": 2657, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2657", "linked_nts": [ "///A/2656", "///A/2658" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart", "alpha": -54.733, "beta": 163.038, "gamma": 41.648, "delta": 81.413, "epsilon": 175.747, "zeta": 141.880, "epsilon_zeta": 33.867, "bb_type": "--", "chi": -156.303, "glyco_bond": "anti", "C5prime_xyz": [ -1.301, 8.775, 0.310 ], "P_xyz": [ 1.282, 9.084, 0.520 ], "form": ".", "ssZp": 4.210, "Dp": 4.308, "splay_angle": 128.227, "splay_distance": 18.180, "splay_ratio": 0.901, "d22": null, "d64": null, "eta": 154.370, "theta": 25.522, "eta_prime": 175.394, "theta_prime": 1.615, "eta_base": -130.881, "theta_base": -29.055, "v0": 1.910, "v1": -23.999, "v2": 35.724, "v3": -35.639, "v4": 21.264, "amplitude": 37.116, "phase_angle": 15.744, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.474, "filter_rmsd": 0.062, "frame": { "rmsd": 0.005, "origin": [ 155.089, 122.269, 209.127 ], "x_axis": [ -0.415, 0.712, 0.566 ], "y_axis": [ -0.722, 0.121, -0.682 ], "z_axis": [ -0.554, -0.691, 0.464 ], "quaternion": [ 0.541, 0.004, -0.518, 0.663 ] } }, { "index": 2411, "index_chain": 2411, "chain_name": "A", "nt_resnum": 2658, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2658", "linked_nts": [ "///A/2657", "///A/2659" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate,splayed-apart", "alpha": -32.821, "beta": -117.690, "gamma": -45.787, "delta": 149.602, "epsilon": -123.820, "zeta": 170.904, "epsilon_zeta": 65.276, "bb_type": "BII", "chi": -105.594, "glyco_bond": "anti", "C5prime_xyz": [ -2.427, 8.186, -1.829 ], "P_xyz": [ -3.265, 10.565, -2.546 ], "form": ".", "ssZp": 1.367, "Dp": 1.383, "splay_angle": 132.198, "splay_distance": 18.059, "splay_ratio": 0.914, "d22": null, "d64": null, "eta": -150.848, "theta": 138.160, "eta_prime": -124.883, "theta_prime": 147.997, "eta_base": -89.683, "theta_base": 158.482, "v0": -22.481, "v1": 37.667, "v2": -37.561, "v3": 25.557, "v4": -2.144, "amplitude": 39.013, "phase_angle": 164.322, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 138.332, 120.826, 202.224 ], "x_axis": [ -0.136, -0.123, -0.983 ], "y_axis": [ 0.851, -0.522, -0.053 ], "z_axis": [ -0.507, -0.844, 0.176 ], "quaternion": [ -0.360, -0.550, -0.331, 0.677 ] } }, { "index": 2412, "index_chain": 2412, "chain_name": "A", "nt_resnum": 2659, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2659", "linked_nts": [ "///A/2658", "///A/2660" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,A-minor,splayed-apart", "alpha": 47.764, "beta": 174.196, "gamma": 21.857, "delta": 79.819, "epsilon": -154.198, "zeta": -68.140, "epsilon_zeta": -86.058, "bb_type": "BI", "chi": -176.115, "glyco_bond": "anti", "C5prime_xyz": [ -1.710, 8.660, 1.382 ], "P_xyz": [ 0.283, 9.373, 2.925 ], "form": "A", "ssZp": 4.517, "Dp": 4.527, "splay_angle": 24.249, "splay_distance": 3.888, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": -75.500, "theta": -152.843, "eta_prime": -89.489, "theta_prime": -145.961, "eta_base": -77.088, "theta_base": -112.193, "v0": -2.035, "v1": -20.733, "v2": 34.236, "v3": -36.372, "v4": 24.254, "amplitude": 36.847, "phase_angle": 21.699, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 145.097, 113.653, 217.353 ], "x_axis": [ 0.368, -0.887, -0.279 ], "y_axis": [ -0.285, 0.178, -0.942 ], "z_axis": [ 0.885, 0.427, -0.187 ], "quaternion": [ 0.583, -0.587, 0.499, -0.258 ] } }, { "index": 2413, "index_chain": 2413, "chain_name": "A", "nt_resnum": 2660, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2660", "linked_nts": [ "///A/2659", "///A/2661" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -67.357, "beta": -179.531, "gamma": 53.886, "delta": 82.185, "epsilon": -162.113, "zeta": -69.193, "epsilon_zeta": -92.920, "bb_type": "BI", "chi": -167.786, "glyco_bond": "anti", "C5prime_xyz": [ -1.557, 8.752, 0.967 ], "P_xyz": [ 0.890, 9.261, 1.754 ], "form": ".", "ssZp": 4.367, "Dp": 4.413, "splay_angle": 21.857, "splay_distance": 3.978, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 170.236, "theta": -120.805, "eta_prime": -175.037, "theta_prime": -130.610, "eta_base": -131.968, "theta_base": -107.827, "v0": -1.996, "v1": -19.737, "v2": 32.703, "v3": -34.768, "v4": 23.208, "amplitude": 35.219, "phase_angle": 21.789, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.954, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 148.849, 114.020, 218.307 ], "x_axis": [ 0.091, -0.641, -0.762 ], "y_axis": [ -0.492, 0.636, -0.594 ], "z_axis": [ 0.866, 0.429, -0.257 ], "quaternion": [ 0.606, -0.422, 0.671, -0.062 ] } }, { "index": 2414, "index_chain": 2414, "chain_name": "A", "nt_resnum": 2661, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2661", "linked_nts": [ "///A/2660", "///A/2662" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 150.504, "beta": -162.233, "gamma": 178.681, "delta": 81.091, "epsilon": -128.768, "zeta": -96.135, "epsilon_zeta": -32.633, "bb_type": "--", "chi": 178.028, "glyco_bond": "anti", "C5prime_xyz": [ -1.825, 8.407, 1.750 ], "P_xyz": [ -0.309, 10.395, 1.002 ], "form": "A", "ssZp": 4.579, "Dp": 4.623, "splay_angle": 24.409, "splay_distance": 3.836, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 163.323, "theta": -177.101, "eta_prime": -179.847, "theta_prime": -168.292, "eta_base": -135.874, "theta_base": -142.501, "v0": -0.520, "v1": -22.004, "v2": 34.895, "v3": -36.220, "v4": 23.140, "amplitude": 37.002, "phase_angle": 19.427, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.970, "filter_rmsd": 0.043, "frame": { "rmsd": 0.008, "origin": [ 152.605, 112.916, 217.602 ], "x_axis": [ -0.222, -0.265, -0.939 ], "y_axis": [ -0.439, 0.886, -0.146 ], "z_axis": [ 0.870, 0.380, -0.313 ], "quaternion": [ 0.581, -0.226, 0.778, 0.075 ] } }, { "index": 2415, "index_chain": 2415, "chain_name": "A", "nt_resnum": 2662, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2662", "linked_nts": [ "///A/2661", "///A/2663" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -45.943, "beta": 165.779, "gamma": 41.806, "delta": 84.164, "epsilon": -169.560, "zeta": -78.592, "epsilon_zeta": -90.969, "bb_type": "BI", "chi": -156.582, "glyco_bond": "anti", "C5prime_xyz": [ -1.342, 8.770, 0.360 ], "P_xyz": [ 1.189, 9.134, 0.901 ], "form": "A", "ssZp": 4.133, "Dp": 4.298, "splay_angle": 19.451, "splay_distance": 3.327, "splay_ratio": 0.174, "d22": null, "d64": null, "eta": 170.305, "theta": -129.248, "eta_prime": -177.932, "theta_prime": -138.982, "eta_base": -147.530, "theta_base": -118.336, "v0": -1.062, "v1": -19.564, "v2": 31.584, "v3": -33.105, "v4": 21.594, "amplitude": 33.703, "phase_angle": 20.424, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.338, "filter_rmsd": 0.043, "frame": { "rmsd": 0.009, "origin": [ 156.335, 112.406, 216.867 ], "x_axis": [ -0.513, 0.230, -0.827 ], "y_axis": [ -0.196, 0.907, 0.374 ], "z_axis": [ 0.836, 0.354, -0.420 ], "quaternion": [ 0.493, 0.010, 0.843, 0.216 ] } }, { "index": 2416, "index_chain": 2416, "chain_name": "A", "nt_resnum": 2663, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2663", "linked_nts": [ "///A/2662", "///A/2664" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 156.269, "beta": -151.474, "gamma": 166.199, "delta": 82.017, "epsilon": -142.015, "zeta": -78.439, "epsilon_zeta": -63.576, "bb_type": "BI", "chi": -175.907, "glyco_bond": "anti", "C5prime_xyz": [ -1.572, 8.570, 1.441 ], "P_xyz": [ 0.398, 9.945, 0.424 ], "form": "A", "ssZp": 4.483, "Dp": 4.539, "splay_angle": 22.030, "splay_distance": 3.576, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 159.734, "theta": -159.908, "eta_prime": 177.542, "theta_prime": -159.459, "eta_base": -141.147, "theta_base": -133.963, "v0": -1.138, "v1": -20.685, "v2": 33.417, "v3": -35.017, "v4": 22.804, "amplitude": 35.656, "phase_angle": 20.413, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.642, "filter_rmsd": 0.045, "frame": { "rmsd": 0.013, "origin": [ 158.640, 112.161, 214.480 ], "x_axis": [ -0.613, 0.604, -0.510 ], "y_axis": [ 0.145, 0.720, 0.679 ], "z_axis": [ 0.777, 0.342, -0.529 ], "quaternion": [ 0.380, 0.221, 0.846, 0.302 ] } }, { "index": 2417, "index_chain": 2417, "chain_name": "A", "nt_resnum": 2664, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2664", "linked_nts": [ "///A/2663", "///A/2665" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -49.796, "beta": 167.349, "gamma": 45.482, "delta": 80.406, "epsilon": -163.794, "zeta": -67.441, "epsilon_zeta": -96.352, "bb_type": "BI", "chi": -158.516, "glyco_bond": "anti", "C5prime_xyz": [ -1.581, 8.808, 0.412 ], "P_xyz": [ 0.918, 9.455, 0.795 ], "form": ".", "ssZp": 4.261, "Dp": 4.421, "splay_angle": 28.117, "splay_distance": 4.696, "splay_ratio": 0.248, "d22": 4.402, "d64": 4.900, "eta": 168.760, "theta": -125.073, "eta_prime": -175.076, "theta_prime": -131.926, "eta_base": -135.573, "theta_base": -100.911, "v0": -1.975, "v1": -20.467, "v2": 33.849, "v3": -35.959, "v4": 23.961, "amplitude": 36.427, "phase_angle": 21.687, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.720, "filter_rmsd": 0.097, "frame": { "rmsd": 0.010, "origin": [ 160.456, 112.197, 211.400 ], "x_axis": [ -0.385, 0.917, -0.107 ], "y_axis": [ 0.497, 0.304, 0.813 ], "z_axis": [ 0.777, 0.260, -0.573 ], "quaternion": [ 0.294, 0.470, 0.752, 0.356 ] } }, { "index": 2418, "index_chain": 2418, "chain_name": "A", "nt_resnum": 2665, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2665", "linked_nts": [ "///A/2664", "///A/2666" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": 165.926, "beta": -165.009, "gamma": 166.943, "delta": 83.055, "epsilon": -156.388, "zeta": -87.844, "epsilon_zeta": -68.544, "bb_type": "BI", "chi": -173.156, "glyco_bond": "anti", "C5prime_xyz": [ -1.174, 8.428, 1.324 ], "P_xyz": [ 0.559, 9.937, 0.080 ], "form": ".", "ssZp": 4.584, "Dp": 4.588, "splay_angle": 35.200, "splay_distance": 5.257, "splay_ratio": 0.303, "d22": 5.437, "d64": 5.841, "eta": 164.411, "theta": 174.213, "eta_prime": -174.185, "theta_prime": 178.601, "eta_base": -120.539, "theta_base": -168.010, "v0": 4.802, "v1": -25.679, "v2": 35.730, "v3": -33.992, "v4": 18.453, "amplitude": 36.436, "phase_angle": 11.295, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.672, "filter_rmsd": 0.107, "frame": { "rmsd": 0.010, "origin": [ 162.119, 115.141, 208.142 ], "x_axis": [ 0.015, 0.908, 0.418 ], "y_axis": [ 0.648, -0.327, 0.688 ], "z_axis": [ 0.761, 0.261, -0.594 ], "quaternion": [ 0.153, 0.696, 0.560, 0.424 ] } }, { "index": 2419, "index_chain": 2419, "chain_name": "A", "nt_resnum": 2666, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2666", "linked_nts": [ "///A/2665", "///A/2667" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -49.980, "beta": -179.800, "gamma": 47.566, "delta": 87.455, "epsilon": -121.387, "zeta": -79.884, "epsilon_zeta": -41.503, "bb_type": "--", "chi": -170.531, "glyco_bond": "anti", "C5prime_xyz": [ -1.296, 8.463, 1.218 ], "P_xyz": [ 1.101, 8.485, 2.263 ], "form": ".", "ssZp": 4.418, "Dp": 4.610, "splay_angle": 33.010, "splay_distance": 5.151, "splay_ratio": 0.284, "d22": null, "d64": null, "eta": -166.445, "theta": -120.428, "eta_prime": -165.930, "theta_prime": -106.295, "eta_base": -159.156, "theta_base": -57.924, "v0": 3.316, "v1": -22.461, "v2": 32.017, "v3": -31.033, "v4": 17.520, "amplitude": 32.861, "phase_angle": 13.015, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.619, "filter_rmsd": 0.103, "frame": { "rmsd": 0.010, "origin": [ 163.642, 115.041, 203.111 ], "x_axis": [ 0.058, 0.732, 0.679 ], "y_axis": [ 0.466, -0.621, 0.630 ], "z_axis": [ 0.883, 0.279, -0.377 ], "quaternion": [ 0.122, 0.717, 0.418, 0.545 ] } }, { "index": 2420, "index_chain": 2420, "chain_name": "A", "nt_resnum": 2667, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2667", "linked_nts": [ "///A/2666", "///A/2668" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -41.106, "beta": 143.733, "gamma": 71.821, "delta": 140.104, "epsilon": -143.030, "zeta": 163.486, "epsilon_zeta": 53.483, "bb_type": "--", "chi": -135.082, "glyco_bond": "anti", "C5prime_xyz": [ -1.906, 8.759, -0.515 ], "P_xyz": [ 0.682, 8.888, -0.797 ], "form": ".", "ssZp": 2.396, "Dp": 2.182, "splay_angle": 44.436, "splay_distance": 6.938, "splay_ratio": 0.386, "d22": null, "d64": null, "eta": 175.547, "theta": 174.967, "eta_prime": -131.630, "theta_prime": 164.818, "eta_base": -71.423, "theta_base": -177.793, "v0": -23.628, "v1": 34.251, "v2": -31.157, "v3": 18.294, "v4": 3.237, "amplitude": 34.123, "phase_angle": 155.936, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.255, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 167.682, 117.572, 205.063 ], "x_axis": [ 0.457, -0.057, 0.887 ], "y_axis": [ 0.380, -0.890, -0.253 ], "z_axis": [ 0.804, 0.453, -0.385 ], "quaternion": [ -0.214, 0.826, 0.098, 0.512 ] } }, { "index": 2421, "index_chain": 2421, "chain_name": "A", "nt_resnum": 2668, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2668", "linked_nts": [ "///A/2667", "///A/2669" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": 168.208, "beta": -131.881, "gamma": 120.785, "delta": 83.163, "epsilon": -111.117, "zeta": -60.529, "epsilon_zeta": -50.588, "bb_type": "--", "chi": -174.302, "glyco_bond": "anti", "C5prime_xyz": [ -1.127, 8.341, 1.372 ], "P_xyz": [ 1.383, 8.120, 0.662 ], "form": ".", "ssZp": 4.673, "Dp": 4.820, "splay_angle": 41.783, "splay_distance": 6.586, "splay_ratio": 0.359, "d22": null, "d64": null, "eta": 171.337, "theta": -96.244, "eta_prime": 152.136, "theta_prime": -96.226, "eta_base": 166.537, "theta_base": -65.857, "v0": 7.134, "v1": -28.105, "v2": 37.276, "v3": -34.169, "v4": 17.096, "amplitude": 37.637, "phase_angle": 7.952, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.011, "origin": [ 167.342, 119.947, 198.553 ], "x_axis": [ 0.563, -0.125, 0.817 ], "y_axis": [ 0.159, -0.954, -0.256 ], "z_axis": [ 0.811, 0.274, -0.517 ], "quaternion": [ -0.152, 0.871, 0.010, 0.468 ] } }, { "index": 2422, "index_chain": 2422, "chain_name": "A", "nt_resnum": 2669, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2669", "linked_nts": [ "///A/2668", "///A/2670" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -59.441, "beta": 157.741, "gamma": 67.444, "delta": 77.720, "epsilon": -154.050, "zeta": -70.372, "epsilon_zeta": -83.678, "bb_type": "BI", "chi": -171.740, "glyco_bond": "anti", "C5prime_xyz": [ -1.959, 8.690, 1.145 ], "P_xyz": [ 0.512, 9.509, 0.968 ], "form": "A", "ssZp": 4.562, "Dp": 4.580, "splay_angle": 21.585, "splay_distance": 3.539, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": 159.240, "theta": -148.554, "eta_prime": -163.331, "theta_prime": -152.249, "eta_base": -93.611, "theta_base": -130.019, "v0": -1.271, "v1": -23.062, "v2": 37.247, "v3": -38.994, "v4": 25.315, "amplitude": 39.726, "phase_angle": 20.350, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.233, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 173.396, 118.503, 200.706 ], "x_axis": [ 0.315, -0.920, 0.231 ], "y_axis": [ -0.381, -0.346, -0.857 ], "z_axis": [ 0.869, 0.182, -0.460 ], "quaternion": [ -0.357, 0.728, -0.447, 0.378 ] } }, { "index": 2423, "index_chain": 2423, "chain_name": "A", "nt_resnum": 2670, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2670", "linked_nts": [ "///A/2669", "///A/2671" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -68.730, "beta": -179.310, "gamma": 51.610, "delta": 77.485, "epsilon": -149.207, "zeta": -77.738, "epsilon_zeta": -71.469, "bb_type": "BI", "chi": -163.712, "glyco_bond": "anti", "C5prime_xyz": [ -1.614, 8.720, 0.701 ], "P_xyz": [ 0.861, 9.461, 1.101 ], "form": "A", "ssZp": 4.522, "Dp": 4.659, "splay_angle": 26.007, "splay_distance": 4.124, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 166.241, "theta": -155.606, "eta_prime": 175.678, "theta_prime": -152.086, "eta_base": -146.661, "theta_base": -129.197, "v0": 1.233, "v1": -25.106, "v2": 38.101, "v3": -38.422, "v4": 23.447, "amplitude": 39.811, "phase_angle": 16.857, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.912, "filter_rmsd": 0.040, "frame": { "rmsd": 0.008, "origin": [ 176.829, 119.002, 201.407 ], "x_axis": [ -0.001, -0.970, -0.243 ], "y_axis": [ -0.419, 0.221, -0.881 ], "z_axis": [ 0.908, 0.101, -0.406 ], "quaternion": [ 0.451, -0.544, 0.638, -0.306 ] } }, { "index": 2424, "index_chain": 2424, "chain_name": "A", "nt_resnum": 2671, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2671", "linked_nts": [ "///A/2670", "///A/2672" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.630, "beta": 161.945, "gamma": 70.846, "delta": 79.247, "epsilon": -154.092, "zeta": -71.302, "epsilon_zeta": -82.790, "bb_type": "BI", "chi": -168.877, "glyco_bond": "anti", "C5prime_xyz": [ -1.634, 8.687, 1.019 ], "P_xyz": [ 0.880, 9.324, 0.691 ], "form": "A", "ssZp": 4.574, "Dp": 4.614, "splay_angle": 25.955, "splay_distance": 4.053, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 172.233, "theta": -148.473, "eta_prime": -173.217, "theta_prime": -150.399, "eta_base": -137.963, "theta_base": -125.028, "v0": 1.544, "v1": -24.953, "v2": 37.548, "v3": -37.658, "v4": 22.769, "amplitude": 39.133, "phase_angle": 16.363, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.488, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 180.892, 118.300, 201.361 ], "x_axis": [ -0.197, -0.763, -0.615 ], "y_axis": [ -0.353, 0.641, -0.682 ], "z_axis": [ 0.915, 0.082, -0.396 ], "quaternion": [ 0.512, -0.373, 0.747, -0.201 ] } }, { "index": 2425, "index_chain": 2425, "chain_name": "A", "nt_resnum": 2672, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2672", "linked_nts": [ "///A/2671", "///A/2673" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -72.627, "beta": 178.627, "gamma": 62.567, "delta": 85.039, "epsilon": -131.810, "zeta": -82.915, "epsilon_zeta": -48.895, "bb_type": "BI", "chi": -175.462, "glyco_bond": "anti", "C5prime_xyz": [ -1.607, 8.582, 1.410 ], "P_xyz": [ 0.868, 8.928, 2.211 ], "form": ".", "ssZp": 4.468, "Dp": 4.538, "splay_angle": 21.725, "splay_distance": 3.421, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 177.695, "theta": -135.983, "eta_prime": -172.501, "theta_prime": -131.467, "eta_base": -134.999, "theta_base": -86.550, "v0": -1.115, "v1": -19.522, "v2": 31.432, "v3": -32.978, "v4": 21.533, "amplitude": 33.550, "phase_angle": 20.466, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.801, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 184.556, 116.792, 200.509 ], "x_axis": [ -0.590, -0.279, -0.758 ], "y_axis": [ -0.259, 0.954, -0.150 ], "z_axis": [ 0.765, 0.108, -0.635 ], "quaternion": [ 0.427, -0.151, 0.891, -0.012 ] } }, { "index": 2426, "index_chain": 2426, "chain_name": "A", "nt_resnum": 2673, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2673", "linked_nts": [ "///A/2672", "///A/2674" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -53.462, "beta": 158.025, "gamma": 51.060, "delta": 90.063, "epsilon": -133.067, "zeta": -85.152, "epsilon_zeta": -47.915, "bb_type": "BI", "chi": -159.218, "glyco_bond": "anti", "C5prime_xyz": [ -1.589, 8.734, 0.547 ], "P_xyz": [ 0.960, 8.974, 1.113 ], "form": "B", "ssZp": 3.898, "Dp": 4.237, "splay_angle": 24.482, "splay_distance": 3.993, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 170.299, "theta": -131.721, "eta_prime": -170.217, "theta_prime": -122.968, "eta_base": -112.229, "theta_base": -85.172, "v0": -3.579, "v1": -14.477, "v2": 25.825, "v3": -28.656, "v4": 20.361, "amplitude": 28.642, "phase_angle": 25.622, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.585, "filter_rmsd": 0.039, "frame": { "rmsd": 0.014, "origin": [ 186.010, 116.421, 197.434 ], "x_axis": [ -0.712, 0.459, -0.532 ], "y_axis": [ 0.274, 0.878, 0.392 ], "z_axis": [ 0.647, 0.133, -0.751 ], "quaternion": [ 0.322, 0.200, 0.914, 0.144 ] } }, { "index": 2427, "index_chain": 2427, "chain_name": "A", "nt_resnum": 2674, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2674", "linked_nts": [ "///A/2673", "///A/2675" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,junction-loop,cap-acceptor,splayed-apart", "alpha": -44.932, "beta": 165.959, "gamma": 56.232, "delta": 147.498, "epsilon": -123.836, "zeta": -13.656, "epsilon_zeta": -110.181, "bb_type": "--", "chi": -100.638, "glyco_bond": "anti", "C5prime_xyz": [ -2.120, 8.033, -2.088 ], "P_xyz": [ 0.447, 8.474, -2.288 ], "form": ".", "ssZp": 1.253, "Dp": 1.544, "splay_angle": 136.349, "splay_distance": 17.989, "splay_ratio": 0.929, "d22": null, "d64": null, "eta": -173.130, "theta": -11.063, "eta_prime": -136.901, "theta_prime": -29.420, "eta_base": -97.715, "theta_base": 4.558, "v0": -19.323, "v1": 33.749, "v2": -34.499, "v3": 24.243, "v4": -3.286, "amplitude": 35.483, "phase_angle": 166.473, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.656, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 187.608, 118.361, 194.332 ], "x_axis": [ -0.377, 0.918, -0.123 ], "y_axis": [ 0.830, 0.394, 0.396 ], "z_axis": [ 0.411, 0.047, -0.910 ], "quaternion": [ 0.163, 0.534, 0.819, 0.135 ] } }, { "index": 2428, "index_chain": 2428, "chain_name": "A", "nt_resnum": 2675, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2675", "linked_nts": [ "///A/2674", "///A/2676" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -86.393, "beta": -167.169, "gamma": 81.853, "delta": 80.666, "epsilon": -109.575, "zeta": -92.314, "epsilon_zeta": -17.260, "bb_type": "--", "chi": -172.092, "glyco_bond": "anti", "C5prime_xyz": [ -1.320, 8.624, 1.241 ], "P_xyz": [ 1.278, 8.906, 1.494 ], "form": ".", "ssZp": 4.534, "Dp": 4.731, "splay_angle": 20.714, "splay_distance": 4.041, "splay_ratio": 0.201, "d22": 4.128, "d64": 5.373, "eta": -171.763, "theta": -111.348, "eta_prime": -127.119, "theta_prime": -122.171, "eta_base": -123.583, "theta_base": -114.223, "v0": 2.259, "v1": -24.665, "v2": 36.524, "v3": -36.197, "v4": 21.382, "amplitude": 37.858, "phase_angle": 15.254, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.005, "origin": [ 203.044, 120.569, 203.301 ], "x_axis": [ -0.322, -0.761, 0.563 ], "y_axis": [ -0.703, -0.206, -0.680 ], "z_axis": [ 0.634, -0.615, -0.469 ], "quaternion": [ 0.028, -0.582, 0.629, -0.514 ] } }, { "index": 2429, "index_chain": 2429, "chain_name": "A", "nt_resnum": 2676, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2676", "linked_nts": [ "///A/2675", "///A/2677" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor,phosphate", "alpha": 77.971, "beta": -121.494, "gamma": -119.256, "delta": 82.742, "epsilon": -150.019, "zeta": -65.928, "epsilon_zeta": -84.090, "bb_type": "BI", "chi": -176.589, "glyco_bond": "anti", "C5prime_xyz": [ -1.322, 8.424, 1.506 ], "P_xyz": [ -1.145, 10.890, 0.656 ], "form": ".", "ssZp": 4.585, "Dp": 4.609, "splay_angle": 28.649, "splay_distance": 4.650, "splay_ratio": 0.255, "d22": null, "d64": null, "eta": 179.853, "theta": 165.780, "eta_prime": -172.037, "theta_prime": -176.388, "eta_base": -141.917, "theta_base": -150.108, "v0": 3.354, "v1": -24.551, "v2": 35.202, "v3": -34.241, "v4": 19.500, "amplitude": 36.190, "phase_angle": 13.413, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.007, "origin": [ 206.135, 118.279, 204.541 ], "x_axis": [ -0.554, -0.754, 0.354 ], "y_axis": [ -0.512, -0.027, -0.859 ], "z_axis": [ 0.657, -0.657, -0.371 ], "quaternion": [ 0.110, -0.459, 0.689, -0.550 ] } }, { "index": 2430, "index_chain": 2430, "chain_name": "A", "nt_resnum": 2677, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2677", "linked_nts": [ "///A/2676", "///A/2678" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -70.499, "beta": -169.618, "gamma": 54.223, "delta": 81.194, "epsilon": -175.007, "zeta": -80.511, "epsilon_zeta": -94.496, "bb_type": "BI", "chi": -161.108, "glyco_bond": "anti", "C5prime_xyz": [ -1.720, 8.830, 0.569 ], "P_xyz": [ 0.669, 9.583, 1.335 ], "form": "A", "ssZp": 4.233, "Dp": 4.306, "splay_angle": 21.615, "splay_distance": 3.455, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 172.006, "theta": -141.146, "eta_prime": -172.939, "theta_prime": -146.953, "eta_base": -143.241, "theta_base": -110.437, "v0": -2.085, "v1": -20.328, "v2": 33.681, "v3": -35.805, "v4": 23.885, "amplitude": 36.273, "phase_angle": 21.793, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.856, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 209.808, 115.590, 205.490 ], "x_axis": [ -0.781, -0.621, -0.064 ], "y_axis": [ -0.220, 0.371, -0.902 ], "z_axis": [ 0.584, -0.691, -0.426 ], "quaternion": [ 0.202, -0.262, 0.803, -0.496 ] } }, { "index": 2431, "index_chain": 2431, "chain_name": "A", "nt_resnum": 2678, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2678", "linked_nts": [ "///A/2677", "///A/2679" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 168.715, "beta": -151.321, "gamma": 153.501, "delta": 80.997, "epsilon": -120.116, "zeta": -97.174, "epsilon_zeta": -22.942, "bb_type": "--", "chi": 179.535, "glyco_bond": "anti", "C5prime_xyz": [ -1.172, 8.302, 1.744 ], "P_xyz": [ 1.096, 9.266, 0.879 ], "form": "A", "ssZp": 4.734, "Dp": 4.776, "splay_angle": 22.805, "splay_distance": 3.472, "splay_ratio": 0.198, "d22": 4.098, "d64": 4.102, "eta": 160.825, "theta": -152.612, "eta_prime": 174.789, "theta_prime": -150.248, "eta_base": -131.261, "theta_base": -117.016, "v0": 5.523, "v1": -27.043, "v2": 37.165, "v3": -34.956, "v4": 18.561, "amplitude": 37.783, "phase_angle": 10.380, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.131, "filter_rmsd": 0.104, "frame": { "rmsd": 0.007, "origin": [ 210.993, 112.365, 205.140 ], "x_axis": [ -0.753, -0.254, -0.607 ], "y_axis": [ 0.329, 0.653, -0.682 ], "z_axis": [ 0.570, -0.713, -0.408 ], "quaternion": [ 0.351, 0.022, 0.839, -0.416 ] } }, { "index": 2432, "index_chain": 2432, "chain_name": "A", "nt_resnum": 2679, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2679", "linked_nts": [ "///A/2678", "///A/2680" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -42.444, "beta": 142.576, "gamma": 51.805, "delta": 81.240, "epsilon": -152.855, "zeta": -123.136, "epsilon_zeta": -29.719, "bb_type": "BI", "chi": -173.218, "glyco_bond": "anti", "C5prime_xyz": [ -1.548, 8.623, 1.287 ], "P_xyz": [ 1.062, 8.699, 1.354 ], "form": "A", "ssZp": 4.539, "Dp": 4.570, "splay_angle": 23.898, "splay_distance": 3.716, "splay_ratio": 0.209, "d22": 4.750, "d64": 4.404, "eta": 162.848, "theta": -144.653, "eta_prime": -176.967, "theta_prime": -143.888, "eta_base": -125.040, "theta_base": -130.354, "v0": 0.824, "v1": -23.192, "v2": 35.449, "v3": -35.967, "v4": 22.113, "amplitude": 37.137, "phase_angle": 17.340, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.695, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 211.595, 109.159, 203.950 ], "x_axis": [ -0.434, 0.215, -0.875 ], "y_axis": [ 0.732, 0.651, -0.203 ], "z_axis": [ 0.525, -0.728, -0.440 ], "quaternion": [ 0.440, 0.298, 0.795, -0.293 ] } }, { "index": 2433, "index_chain": 2433, "chain_name": "A", "nt_resnum": 2680, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2680", "linked_nts": [ "///A/2679", "///A/2681" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 50.050, "beta": 114.989, "gamma": -13.192, "delta": 82.519, "epsilon": 176.336, "zeta": -80.977, "epsilon_zeta": -102.687, "bb_type": "BI", "chi": -149.251, "glyco_bond": "anti", "C5prime_xyz": [ -1.220, 8.817, -0.120 ], "P_xyz": [ 0.949, 8.999, 1.347 ], "form": "A", "ssZp": 4.025, "Dp": 4.255, "splay_angle": 17.652, "splay_distance": 2.968, "splay_ratio": 0.157, "d22": 3.998, "d64": 4.207, "eta": 170.218, "theta": -139.381, "eta_prime": 175.922, "theta_prime": -142.578, "eta_base": -159.236, "theta_base": -127.422, "v0": 0.697, "v1": -22.190, "v2": 34.030, "v3": -34.516, "v4": 21.369, "amplitude": 35.679, "phase_angle": 17.488, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 211.876, 105.605, 202.903 ], "x_axis": [ -0.144, 0.752, -0.643 ], "y_axis": [ 0.873, 0.402, 0.275 ], "z_axis": [ 0.465, -0.521, -0.715 ], "quaternion": [ 0.368, 0.540, 0.752, -0.082 ] } }, { "index": 2434, "index_chain": 2434, "chain_name": "A", "nt_resnum": 2681, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2681", "linked_nts": [ "///A/2680", "///A/2682" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 162.026, "beta": -139.824, "gamma": 162.392, "delta": 82.710, "epsilon": -120.032, "zeta": -70.900, "epsilon_zeta": -49.133, "bb_type": "--", "chi": -171.253, "glyco_bond": "anti", "C5prime_xyz": [ -1.768, 8.732, 1.121 ], "P_xyz": [ 0.367, 9.760, 0.016 ], "form": ".", "ssZp": 4.234, "Dp": 4.430, "splay_angle": 34.663, "splay_distance": 5.535, "splay_ratio": 0.298, "d22": 4.444, "d64": 4.506, "eta": 172.684, "theta": -131.776, "eta_prime": -174.326, "theta_prime": -128.267, "eta_base": -146.543, "theta_base": -73.005, "v0": -4.423, "v1": -17.048, "v2": 30.694, "v3": -34.118, "v4": 24.299, "amplitude": 34.110, "phase_angle": 25.862, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.348, "filter_rmsd": 0.108, "frame": { "rmsd": 0.008, "origin": [ 211.704, 103.748, 200.594 ], "x_axis": [ 0.176, 0.870, -0.461 ], "y_axis": [ 0.925, 0.013, 0.380 ], "z_axis": [ 0.336, -0.493, -0.802 ], "quaternion": [ 0.311, 0.701, 0.640, -0.044 ] } }, { "index": 2435, "index_chain": 2435, "chain_name": "A", "nt_resnum": 2682, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2682", "linked_nts": [ "///A/2681", "///A/2683" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -52.462, "beta": 149.581, "gamma": 55.474, "delta": 76.788, "epsilon": -102.655, "zeta": 4.051, "epsilon_zeta": 253.294, "bb_type": "--", "chi": -149.405, "glyco_bond": "anti", "C5prime_xyz": [ -1.489, 8.780, -0.123 ], "P_xyz": [ 0.974, 9.036, -0.938 ], "form": ".", "ssZp": 3.556, "Dp": 4.773, "splay_angle": 20.865, "splay_distance": 3.406, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": 166.653, "theta": -27.172, "eta_prime": -166.036, "theta_prime": -67.179, "eta_base": -93.520, "theta_base": -121.038, "v0": 2.240, "v1": -26.085, "v2": 38.806, "v3": -38.556, "v4": 22.869, "amplitude": 40.269, "phase_angle": 15.490, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.432, "filter_rmsd": 0.106, "frame": { "rmsd": 0.003, "origin": [ 215.649, 105.174, 196.983 ], "x_axis": [ 0.936, 0.351, -0.018 ], "y_axis": [ 0.322, -0.836, 0.445 ], "z_axis": [ 0.141, -0.422, -0.895 ], "quaternion": [ 0.227, 0.958, 0.176, 0.032 ] } }, { "index": 2436, "index_chain": 2436, "chain_name": "A", "nt_resnum": 2683, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2683", "linked_nts": [ "///A/2682", "///A/2684" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 163.060, "beta": 133.551, "gamma": 90.776, "delta": 145.169, "epsilon": -132.214, "zeta": -119.832, "epsilon_zeta": -12.382, "bb_type": "--", "chi": -146.074, "glyco_bond": "anti", "C5prime_xyz": [ -1.815, 8.720, 0.186 ], "P_xyz": [ 0.770, 8.776, -0.215 ], "form": ".", "ssZp": 1.556, "Dp": 1.660, "splay_angle": 38.717, "splay_distance": 6.584, "splay_ratio": 0.332, "d22": null, "d64": null, "eta": 41.833, "theta": -162.377, "eta_prime": 114.442, "theta_prime": 155.179, "eta_base": 99.968, "theta_base": 164.031, "v0": -21.914, "v1": 35.377, "v2": -34.589, "v3": 22.800, "v4": -0.794, "amplitude": 36.280, "phase_angle": 162.435, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 217.420, 103.939, 194.350 ], "x_axis": [ -0.990, -0.115, -0.086 ], "y_axis": [ 0.070, -0.909, 0.412 ], "z_axis": [ -0.126, 0.401, 0.907 ], "quaternion": [ -0.047, -0.054, 0.208, 0.975 ] } }, { "index": 2437, "index_chain": 2437, "chain_name": "A", "nt_resnum": 2684, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2684", "linked_nts": [ "///A/2683", "///A/2685" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -91.287, "beta": 61.544, "gamma": -148.307, "delta": 145.714, "epsilon": -105.481, "zeta": 144.780, "epsilon_zeta": 109.739, "bb_type": "BII", "chi": -82.837, "glyco_bond": "--", "C5prime_xyz": [ -2.663, 7.476, -2.702 ], "P_xyz": [ -4.837, 7.841, -4.155 ], "form": ".", "ssZp": 0.657, "Dp": 1.239, "splay_angle": 42.014, "splay_distance": 7.305, "splay_ratio": 0.359, "d22": null, "d64": null, "eta": -73.774, "theta": 81.067, "eta_prime": -102.298, "theta_prime": 86.805, "eta_base": -110.565, "theta_base": 108.204, "v0": -20.462, "v1": 34.799, "v2": -35.035, "v3": 24.253, "v4": -2.558, "amplitude": 36.234, "phase_angle": 165.220, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 223.249, 106.900, 193.567 ], "x_axis": [ 0.598, 0.774, 0.210 ], "y_axis": [ 0.676, -0.627, 0.387 ], "z_axis": [ 0.431, -0.089, -0.898 ], "quaternion": [ 0.135, 0.884, 0.410, 0.181 ] } }, { "index": 2438, "index_chain": 2438, "chain_name": "A", "nt_resnum": 2685, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2685", "linked_nts": [ "///A/2684", "///A/2686" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -9.173, "beta": 169.574, "gamma": -96.080, "delta": 94.816, "epsilon": -155.091, "zeta": -49.710, "epsilon_zeta": -105.382, "bb_type": "BI", "chi": -177.399, "glyco_bond": "anti", "C5prime_xyz": [ -0.548, 7.786, 1.440 ], "P_xyz": [ 0.837, 9.543, 2.793 ], "form": "A", "ssZp": 4.738, "Dp": 4.697, "splay_angle": 23.816, "splay_distance": 3.727, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 131.187, "theta": -161.214, "eta_prime": 111.821, "theta_prime": -147.198, "eta_base": 147.200, "theta_base": -104.099, "v0": 25.946, "v1": -41.441, "v2": 40.392, "v3": -26.287, "v4": 0.412, "amplitude": 42.501, "phase_angle": 341.877, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 219.523, 101.944, 189.704 ], "x_axis": [ 0.469, 0.830, 0.303 ], "y_axis": [ 0.442, -0.517, 0.733 ], "z_axis": [ 0.765, -0.210, -0.609 ], "quaternion": [ 0.293, 0.805, 0.395, 0.332 ] } }, { "index": 2439, "index_chain": 2439, "chain_name": "A", "nt_resnum": 2686, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2686", "linked_nts": [ "///A/2685", "///A/2687" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -72.931, "beta": -172.473, "gamma": 54.141, "delta": 80.711, "epsilon": -129.937, "zeta": -65.778, "epsilon_zeta": -64.159, "bb_type": "BI", "chi": -170.903, "glyco_bond": "anti", "C5prime_xyz": [ -1.394, 8.566, 1.141 ], "P_xyz": [ 1.125, 8.874, 1.856 ], "form": ".", "ssZp": 4.621, "Dp": 4.744, "splay_angle": 38.317, "splay_distance": 5.685, "splay_ratio": 0.328, "d22": null, "d64": null, "eta": 173.674, "theta": -124.359, "eta_prime": -165.533, "theta_prime": -116.024, "eta_base": -116.660, "theta_base": -61.682, "v0": 3.870, "v1": -27.698, "v2": 39.625, "v3": -38.415, "v4": 21.816, "amplitude": 40.705, "phase_angle": 13.226, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.399, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 221.534, 104.033, 187.362 ], "x_axis": [ 0.691, 0.304, 0.655 ], "y_axis": [ 0.071, -0.931, 0.357 ], "z_axis": [ 0.719, -0.200, -0.666 ], "quaternion": [ 0.154, 0.907, 0.103, 0.379 ] } }, { "index": 2440, "index_chain": 2440, "chain_name": "A", "nt_resnum": 2687, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2687", "linked_nts": [ "///A/2686", "///A/2688" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,internal-loop,A-minor", "alpha": -61.872, "beta": 155.014, "gamma": 62.560, "delta": 82.302, "epsilon": -140.238, "zeta": -71.660, "epsilon_zeta": -68.578, "bb_type": "BI", "chi": -178.623, "glyco_bond": "anti", "C5prime_xyz": [ -1.167, 8.322, 1.632 ], "P_xyz": [ 1.457, 8.327, 1.474 ], "form": "A", "ssZp": 4.762, "Dp": 4.748, "splay_angle": 21.645, "splay_distance": 3.160, "splay_ratio": 0.188, "d22": null, "d64": null, "eta": 160.184, "theta": -132.350, "eta_prime": -169.037, "theta_prime": -135.392, "eta_base": -87.138, "theta_base": -93.091, "v0": 7.803, "v1": -29.062, "v2": 38.162, "v3": -34.657, "v4": 16.955, "amplitude": 38.462, "phase_angle": 7.156, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.653, "filter_rmsd": 0.068, "frame": { "rmsd": 0.008, "origin": [ 226.971, 102.820, 188.494 ], "x_axis": [ 0.336, -0.701, 0.629 ], "y_axis": [ -0.610, -0.670, -0.422 ], "z_axis": [ 0.717, -0.242, -0.653 ], "quaternion": [ -0.055, 0.815, -0.402, 0.413 ] } }, { "index": 2441, "index_chain": 2441, "chain_name": "A", "nt_resnum": 2688, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2688", "linked_nts": [ "///A/2687", "///A/2689" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-donor,cap-acceptor,splayed-apart", "alpha": -82.154, "beta": -179.103, "gamma": 54.777, "delta": 82.560, "epsilon": -110.414, "zeta": -71.954, "epsilon_zeta": -38.460, "bb_type": "--", "chi": -175.205, "glyco_bond": "anti", "C5prime_xyz": [ -0.925, 8.319, 1.377 ], "P_xyz": [ 1.671, 8.141, 1.715 ], "form": ".", "ssZp": 4.739, "Dp": 4.869, "splay_angle": 98.511, "splay_distance": 10.925, "splay_ratio": 0.770, "d22": null, "d64": null, "eta": 163.769, "theta": -84.000, "eta_prime": 175.254, "theta_prime": -128.144, "eta_base": -123.319, "theta_base": 152.706, "v0": 9.764, "v1": -30.903, "v2": 39.261, "v3": -34.627, "v4": 15.704, "amplitude": 39.387, "phase_angle": 4.572, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.725, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 229.741, 101.343, 188.129 ], "x_axis": [ -0.363, -0.916, 0.174 ], "y_axis": [ -0.583, 0.078, -0.809 ], "z_axis": [ 0.727, -0.395, -0.562 ], "quaternion": [ 0.196, -0.529, 0.707, -0.425 ] } }, { "index": 2442, "index_chain": 2442, "chain_name": "A", "nt_resnum": 2689, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2689", "linked_nts": [ "///A/2688", "///A/2690" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,syn,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 167.165, "beta": 165.251, "gamma": 37.675, "delta": 82.418, "epsilon": -161.819, "zeta": -74.289, "epsilon_zeta": -87.529, "bb_type": "BI", "chi": 27.454, "glyco_bond": "syn", "C5prime_xyz": [ -5.537, 3.487, -0.005 ], "P_xyz": [ -5.500, 0.889, -0.370 ], "form": ".", "ssZp": -4.084, "Dp": 4.356, "splay_angle": 27.664, "splay_distance": 4.229, "splay_ratio": 0.242, "d22": null, "d64": null, "eta": -4.188, "theta": -112.560, "eta_prime": 33.716, "theta_prime": -108.833, "eta_base": 20.488, "theta_base": -123.526, "v0": -2.543, "v1": -18.626, "v2": 31.424, "v3": -33.794, "v4": 22.932, "amplitude": 34.086, "phase_angle": 22.794, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.371, "filter_rmsd": 0.039, "frame": { "rmsd": 0.005, "origin": [ 233.296, 106.469, 179.160 ], "x_axis": [ 0.676, 0.734, 0.065 ], "y_axis": [ 0.623, -0.616, 0.483 ], "z_axis": [ 0.394, -0.286, -0.873 ], "quaternion": [ 0.216, 0.889, 0.381, 0.129 ] } }, { "index": 2443, "index_chain": 2443, "chain_name": "A", "nt_resnum": 2690, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2690", "linked_nts": [ "///A/2689", "///A/2691" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate", "alpha": 160.765, "beta": -123.857, "gamma": 154.509, "delta": 81.765, "epsilon": -126.291, "zeta": -68.659, "epsilon_zeta": -57.632, "bb_type": "--", "chi": -168.238, "glyco_bond": "anti", "C5prime_xyz": [ -1.365, 8.679, 1.004 ], "P_xyz": [ 0.721, 9.038, -0.545 ], "form": ".", "ssZp": 4.530, "Dp": 4.704, "splay_angle": 38.626, "splay_distance": 5.843, "splay_ratio": 0.332, "d22": null, "d64": null, "eta": 162.198, "theta": -124.391, "eta_prime": -160.228, "theta_prime": -127.152, "eta_base": -150.457, "theta_base": -79.389, "v0": 1.678, "v1": -23.324, "v2": 34.843, "v3": -34.853, "v4": 20.900, "amplitude": 36.247, "phase_angle": 16.000, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.073, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 232.196, 109.307, 182.096 ], "x_axis": [ -0.919, -0.160, -0.361 ], "y_axis": [ 0.000, -0.915, 0.403 ], "z_axis": [ -0.395, 0.370, 0.841 ], "quaternion": [ -0.042, -0.197, 0.202, 0.958 ] } }, { "index": 2444, "index_chain": 2444, "chain_name": "A", "nt_resnum": 2691, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2691", "linked_nts": [ "///A/2690", "///A/2692" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,phosphate", "alpha": -57.913, "beta": 153.091, "gamma": 60.282, "delta": 83.872, "epsilon": -102.737, "zeta": -51.407, "epsilon_zeta": -51.330, "bb_type": "--", "chi": -170.153, "glyco_bond": "anti", "C5prime_xyz": [ -1.042, 8.435, 1.124 ], "P_xyz": [ 1.547, 8.392, 0.746 ], "form": ".", "ssZp": 4.531, "Dp": 4.827, "splay_angle": 39.552, "splay_distance": 6.350, "splay_ratio": 0.340, "d22": null, "d64": null, "eta": 171.985, "theta": -92.099, "eta_prime": -161.462, "theta_prime": -88.054, "eta_base": -88.744, "theta_base": -46.321, "v0": 7.299, "v1": -27.926, "v2": 36.763, "v3": -33.560, "v4": 16.627, "amplitude": 37.083, "phase_angle": 7.533, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.598, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 227.112, 107.871, 184.593 ], "x_axis": [ -0.387, -0.898, 0.210 ], "y_axis": [ 0.822, -0.233, 0.519 ], "z_axis": [ -0.417, 0.373, 0.829 ], "quaternion": [ 0.550, 0.066, -0.285, -0.782 ] } }, { "index": 2445, "index_chain": 2445, "chain_name": "A", "nt_resnum": 2692, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2692", "linked_nts": [ "///A/2691", "///A/2693" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,internal-loop,A-minor", "alpha": -81.455, "beta": 133.931, "gamma": 101.923, "delta": 81.936, "epsilon": -145.996, "zeta": -62.433, "epsilon_zeta": -83.563, "bb_type": "BI", "chi": -173.983, "glyco_bond": "anti", "C5prime_xyz": [ -1.859, 8.596, 1.321 ], "P_xyz": [ 0.149, 9.639, 0.003 ], "form": ".", "ssZp": 4.538, "Dp": 4.570, "splay_angle": 26.657, "splay_distance": 4.062, "splay_ratio": 0.231, "d22": null, "d64": null, "eta": 155.982, "theta": -139.817, "eta_prime": -158.928, "theta_prime": -145.819, "eta_base": -79.799, "theta_base": -87.484, "v0": -0.419, "v1": -21.776, "v2": 34.356, "v3": -35.605, "v4": 22.712, "amplitude": 36.394, "phase_angle": 19.266, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 226.578, 102.906, 188.517 ], "x_axis": [ 0.563, -0.659, 0.498 ], "y_axis": [ 0.584, 0.744, 0.325 ], "z_axis": [ -0.584, 0.108, 0.804 ], "quaternion": [ 0.882, 0.061, -0.307, -0.353 ] } }, { "index": 2446, "index_chain": 2446, "chain_name": "A", "nt_resnum": 2693, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2693", "linked_nts": [ "///A/2692", "///A/2694" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -74.851, "beta": 171.623, "gamma": 55.191, "delta": 82.309, "epsilon": -137.281, "zeta": -91.756, "epsilon_zeta": -45.525, "bb_type": "BI", "chi": -167.344, "glyco_bond": "anti", "C5prime_xyz": [ -1.159, 8.580, 0.972 ], "P_xyz": [ 1.448, 8.698, 1.204 ], "form": ".", "ssZp": 4.584, "Dp": 4.728, "splay_angle": 76.298, "splay_distance": 12.297, "splay_ratio": 0.624, "d22": null, "d64": null, "eta": 158.721, "theta": -179.306, "eta_prime": 179.532, "theta_prime": 166.587, "eta_base": -98.294, "theta_base": 150.717, "v0": 5.718, "v1": -27.093, "v2": 37.034, "v3": -34.720, "v4": 18.304, "amplitude": 37.612, "phase_angle": 10.057, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.877, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 226.813, 101.846, 192.431 ], "x_axis": [ 0.792, 0.288, 0.539 ], "y_axis": [ -0.203, 0.956, -0.213 ], "z_axis": [ -0.576, 0.060, 0.815 ], "quaternion": [ 0.944, -0.072, -0.295, 0.130 ] } }, { "index": 2447, "index_chain": 2447, "chain_name": "A", "nt_resnum": 2694, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2694", "linked_nts": [ "///A/2693", "///A/2695" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -85.592, "beta": 77.642, "gamma": -173.378, "delta": 82.910, "epsilon": -119.977, "zeta": -94.412, "epsilon_zeta": -25.565, "bb_type": "--", "chi": 169.534, "glyco_bond": "anti", "C5prime_xyz": [ -1.892, 8.204, 2.150 ], "P_xyz": [ -2.697, 10.535, 1.282 ], "form": "A", "ssZp": 4.484, "Dp": 4.580, "splay_angle": 23.731, "splay_distance": 3.770, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": -124.339, "theta": 147.066, "eta_prime": -152.615, "theta_prime": 173.102, "eta_base": 179.504, "theta_base": -150.720, "v0": -1.220, "v1": -20.403, "v2": 32.928, "v3": -34.587, "v4": 22.586, "amplitude": 35.166, "phase_angle": 20.550, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.206, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 215.230, 99.378, 189.122 ], "x_axis": [ 0.205, -0.745, 0.635 ], "y_axis": [ 0.652, 0.588, 0.478 ], "z_axis": [ -0.729, 0.316, 0.607 ], "quaternion": [ 0.775, 0.052, -0.440, -0.451 ] } }, { "index": 2448, "index_chain": 2448, "chain_name": "A", "nt_resnum": 2695, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2695", "linked_nts": [ "///A/2694", "///A/2696" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -54.832, "beta": 163.341, "gamma": 51.869, "delta": 86.689, "epsilon": 166.866, "zeta": 46.619, "epsilon_zeta": 120.247, "bb_type": "--", "chi": -160.781, "glyco_bond": "anti", "C5prime_xyz": [ -1.532, 8.862, 0.566 ], "P_xyz": [ 0.953, 9.210, 1.324 ], "form": ".", "ssZp": 3.447, "Dp": 3.709, "splay_angle": 36.536, "splay_distance": 5.825, "splay_ratio": 0.313, "d22": 4.168, "d64": 4.060, "eta": 166.943, "theta": -76.114, "eta_prime": -172.399, "theta_prime": -97.200, "eta_base": -136.208, "theta_base": -31.271, "v0": -4.758, "v1": -13.982, "v2": 26.110, "v3": -29.669, "v4": 21.780, "amplitude": 29.495, "phase_angle": 27.720, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.376, "filter_rmsd": 0.067, "frame": { "rmsd": 0.011, "origin": [ 211.653, 99.122, 190.286 ], "x_axis": [ 0.670, -0.290, 0.684 ], "y_axis": [ 0.390, 0.921, 0.008 ], "z_axis": [ -0.632, 0.262, 0.729 ], "quaternion": [ 0.911, -0.070, -0.361, -0.187 ] } }, { "index": 2449, "index_chain": 2449, "chain_name": "A", "nt_resnum": 2696, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2696", "linked_nts": [ "///A/2695", "///A/2697" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -164.345, "beta": 105.987, "gamma": 115.051, "delta": 83.314, "epsilon": -132.229, "zeta": -79.143, "epsilon_zeta": -53.087, "bb_type": "BI", "chi": -157.694, "glyco_bond": "anti", "C5prime_xyz": [ -0.998, 8.671, 0.421 ], "P_xyz": [ -0.054, 9.058, -1.978 ], "form": ".", "ssZp": 4.312, "Dp": 4.739, "splay_angle": 38.794, "splay_distance": 6.208, "splay_ratio": 0.333, "d22": null, "d64": null, "eta": 125.328, "theta": -154.635, "eta_prime": 172.628, "theta_prime": -158.052, "eta_base": -89.792, "theta_base": -142.018, "v0": 6.250, "v1": -27.442, "v2": 37.119, "v3": -34.458, "v4": 17.834, "amplitude": 37.608, "phase_angle": 9.248, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.006, "origin": [ 214.164, 102.233, 194.523 ], "x_axis": [ 0.528, 0.775, 0.348 ], "y_axis": [ -0.684, 0.631, -0.367 ], "z_axis": [ -0.504, -0.044, 0.863 ], "quaternion": [ 0.869, -0.093, -0.245, 0.420 ] } }, { "index": 2450, "index_chain": 2450, "chain_name": "A", "nt_resnum": 2697, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2697", "linked_nts": [ "///A/2696", "///A/2698" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -59.213, "beta": -172.566, "gamma": 49.572, "delta": 81.743, "epsilon": -176.089, "zeta": -81.506, "epsilon_zeta": -94.583, "bb_type": "BI", "chi": -155.489, "glyco_bond": "anti", "C5prime_xyz": [ -1.370, 8.821, 0.278 ], "P_xyz": [ 1.119, 9.428, 0.830 ], "form": "A", "ssZp": 4.223, "Dp": 4.355, "splay_angle": 21.788, "splay_distance": 3.501, "splay_ratio": 0.191, "d22": null, "d64": null, "eta": 175.262, "theta": -138.980, "eta_prime": -171.858, "theta_prime": -144.088, "eta_base": -144.822, "theta_base": -108.747, "v0": 0.921, "v1": -22.666, "v2": 34.508, "v3": -34.939, "v4": 21.476, "amplitude": 36.119, "phase_angle": 17.176, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.777, "filter_rmsd": 0.004, "frame": { "rmsd": 0.004, "origin": [ 212.681, 102.937, 200.511 ], "x_axis": [ 0.363, 0.885, -0.292 ], "y_axis": [ -0.753, 0.094, -0.651 ], "z_axis": [ -0.548, 0.456, 0.701 ], "quaternion": [ 0.734, -0.377, -0.087, 0.558 ] } }, { "index": 2451, "index_chain": 2451, "chain_name": "A", "nt_resnum": 2698, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2698", "linked_nts": [ "///A/2697", "///A/2699" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 157.840, "beta": -141.588, "gamma": 161.293, "delta": 82.847, "epsilon": -129.913, "zeta": -58.254, "epsilon_zeta": -71.659, "bb_type": "BI", "chi": 174.835, "glyco_bond": "anti", "C5prime_xyz": [ -1.373, 8.263, 1.968 ], "P_xyz": [ 0.866, 9.309, 1.106 ], "form": ".", "ssZp": 4.666, "Dp": 4.692, "splay_angle": 21.418, "splay_distance": 3.764, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 162.240, "theta": -126.808, "eta_prime": -179.129, "theta_prime": -131.118, "eta_base": -122.819, "theta_base": -104.715, "v0": 3.903, "v1": -24.627, "v2": 34.919, "v3": -33.657, "v4": 18.775, "amplitude": 35.772, "phase_angle": 12.539, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.377, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 212.172, 105.427, 202.919 ], "x_axis": [ -0.121, 0.766, -0.632 ], "y_axis": [ -0.827, -0.429, -0.362 ], "z_axis": [ -0.548, 0.479, 0.685 ], "quaternion": [ 0.533, -0.395, 0.039, 0.748 ] } }, { "index": 2452, "index_chain": 2452, "chain_name": "A", "nt_resnum": 2699, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2699", "linked_nts": [ "///A/2698", "///A/2700" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -68.868, "beta": -165.639, "gamma": 34.362, "delta": 81.399, "epsilon": 173.081, "zeta": -82.220, "epsilon_zeta": -104.699, "bb_type": "BI", "chi": -145.801, "glyco_bond": "anti", "C5prime_xyz": [ -1.971, 8.787, -0.332 ], "P_xyz": [ 0.201, 10.058, 0.374 ], "form": "A", "ssZp": 3.943, "Dp": 4.188, "splay_angle": 19.386, "splay_distance": 3.203, "splay_ratio": 0.171, "d22": null, "d64": null, "eta": 152.067, "theta": -155.318, "eta_prime": 175.183, "theta_prime": -161.770, "eta_base": -135.717, "theta_base": -136.936, "v0": -2.903, "v1": -19.295, "v2": 32.801, "v3": -35.422, "v4": 24.148, "amplitude": 35.676, "phase_angle": 23.157, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.328, "filter_rmsd": 0.019, "frame": { "rmsd": 0.019, "origin": [ 211.962, 109.049, 203.918 ], "x_axis": [ -0.492, 0.189, -0.850 ], "y_axis": [ -0.666, -0.711, 0.227 ], "z_axis": [ -0.561, 0.678, 0.476 ], "quaternion": [ 0.261, -0.431, 0.277, 0.818 ] } }, { "index": 2453, "index_chain": 2453, "chain_name": "A", "nt_resnum": 2700, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2700", "linked_nts": [ "///A/2699", "///A/2701" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 159.075, "beta": -150.862, "gamma": 162.796, "delta": 81.129, "epsilon": -113.715, "zeta": -106.806, "epsilon_zeta": -6.910, "bb_type": "--", "chi": -178.569, "glyco_bond": "anti", "C5prime_xyz": [ -1.263, 8.369, 1.620 ], "P_xyz": [ 0.797, 9.599, 0.583 ], "form": "A", "ssZp": 4.675, "Dp": 4.756, "splay_angle": 24.279, "splay_distance": 3.710, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 165.802, "theta": -159.227, "eta_prime": 172.666, "theta_prime": -152.922, "eta_base": -150.288, "theta_base": -118.152, "v0": 4.133, "v1": -25.651, "v2": 36.338, "v3": -34.973, "v4": 19.441, "amplitude": 37.209, "phase_angle": 12.420, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.388, "filter_rmsd": 0.043, "frame": { "rmsd": 0.011, "origin": [ 211.235, 112.043, 204.795 ], "x_axis": [ -0.713, -0.195, -0.673 ], "y_axis": [ -0.398, -0.678, 0.618 ], "z_axis": [ -0.577, 0.708, 0.406 ], "quaternion": [ 0.061, -0.374, 0.396, 0.836 ] } }, { "index": 2454, "index_chain": 2454, "chain_name": "A", "nt_resnum": 2701, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2701", "linked_nts": [ "///A/2700", "///A/2702" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -34.840, "beta": 135.665, "gamma": 52.144, "delta": 81.176, "epsilon": -165.447, "zeta": -76.684, "epsilon_zeta": -88.763, "bb_type": "BI", "chi": -160.919, "glyco_bond": "anti", "C5prime_xyz": [ -1.466, 8.750, 0.577 ], "P_xyz": [ 1.115, 8.746, 0.231 ], "form": ".", "ssZp": 4.328, "Dp": 4.437, "splay_angle": 26.038, "splay_distance": 4.599, "splay_ratio": 0.238, "d22": null, "d64": null, "eta": 165.785, "theta": -123.873, "eta_prime": -172.057, "theta_prime": -144.175, "eta_base": -123.274, "theta_base": -141.129, "v0": -0.593, "v1": -21.534, "v2": 34.273, "v3": -35.612, "v4": 22.839, "amplitude": 36.376, "phase_angle": 19.576, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.502, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 208.720, 114.768, 204.885 ], "x_axis": [ -0.826, -0.539, -0.164 ], "y_axis": [ 0.039, -0.345, 0.938 ], "z_axis": [ -0.562, 0.768, 0.306 ], "quaternion": [ -0.184, -0.231, 0.542, 0.787 ] } }, { "index": 2455, "index_chain": 2455, "chain_name": "A", "nt_resnum": 2702, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2702", "linked_nts": [ "///A/2701", "///A/2703" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 145.089, "beta": -169.601, "gamma": -172.218, "delta": 82.143, "epsilon": -128.242, "zeta": -87.584, "epsilon_zeta": -40.657, "bb_type": "--", "chi": 175.936, "glyco_bond": "anti", "C5prime_xyz": [ -1.227, 8.225, 1.920 ], "P_xyz": [ 0.233, 10.328, 1.395 ], "form": "A", "ssZp": 4.774, "Dp": 4.762, "splay_angle": 28.278, "splay_distance": 4.327, "splay_ratio": 0.247, "d22": null, "d64": null, "eta": 165.058, "theta": -172.466, "eta_prime": 172.832, "theta_prime": -162.435, "eta_base": -160.327, "theta_base": -129.139, "v0": 5.491, "v1": -26.685, "v2": 36.677, "v3": -34.562, "v4": 18.326, "amplitude": 37.289, "phase_angle": 10.398, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.813, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 206.588, 118.540, 203.341 ], "x_axis": [ -0.675, -0.726, 0.132 ], "y_axis": [ 0.368, -0.176, 0.913 ], "z_axis": [ -0.639, 0.665, 0.386 ], "quaternion": [ -0.366, -0.169, 0.528, 0.748 ] } }, { "index": 2456, "index_chain": 2456, "chain_name": "A", "nt_resnum": 2703, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2703", "linked_nts": [ "///A/2702", "///A/2704" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -42.466, "beta": 160.596, "gamma": 45.200, "delta": 81.451, "epsilon": -121.627, "zeta": -94.640, "epsilon_zeta": -26.987, "bb_type": "--", "chi": 177.779, "glyco_bond": "anti", "C5prime_xyz": [ -1.734, 8.432, 1.767 ], "P_xyz": [ 0.681, 8.641, 2.724 ], "form": "A", "ssZp": 4.610, "Dp": 4.647, "splay_angle": 21.198, "splay_distance": 3.313, "splay_ratio": 0.185, "d22": null, "d64": null, "eta": 177.361, "theta": -141.086, "eta_prime": -170.017, "theta_prime": -136.789, "eta_base": -131.951, "theta_base": -102.040, "v0": -0.553, "v1": -21.628, "v2": 34.306, "v3": -35.631, "v4": 22.816, "amplitude": 36.392, "phase_angle": 19.492, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.410, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 202.876, 120.762, 203.217 ], "x_axis": [ -0.237, -0.817, 0.526 ], "y_axis": [ 0.792, 0.151, 0.592 ], "z_axis": [ -0.563, 0.557, 0.611 ], "quaternion": [ 0.617, 0.014, -0.441, -0.651 ] } }, { "index": 2457, "index_chain": 2457, "chain_name": "A", "nt_resnum": 2704, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2704", "linked_nts": [ "///A/2703", "///A/2705" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -51.724, "beta": 146.898, "gamma": 54.830, "delta": 83.184, "epsilon": -151.101, "zeta": -63.929, "epsilon_zeta": -87.172, "bb_type": "BI", "chi": -174.119, "glyco_bond": "anti", "C5prime_xyz": [ -1.798, 8.627, 1.304 ], "P_xyz": [ 0.768, 8.924, 1.675 ], "form": "A", "ssZp": 4.327, "Dp": 4.410, "splay_angle": 23.374, "splay_distance": 3.747, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 162.204, "theta": -132.080, "eta_prime": -179.445, "theta_prime": -135.877, "eta_base": -128.423, "theta_base": -98.597, "v0": -3.461, "v1": -18.282, "v2": 31.711, "v3": -34.629, "v4": 24.004, "amplitude": 34.760, "phase_angle": 24.176, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.838, "filter_rmsd": 0.043, "frame": { "rmsd": 0.010, "origin": [ 200.095, 121.518, 204.849 ], "x_axis": [ 0.378, -0.624, 0.684 ], "y_axis": [ 0.765, 0.627, 0.148 ], "z_axis": [ -0.521, 0.467, 0.714 ], "quaternion": [ 0.824, -0.097, -0.366, -0.421 ] } }, { "index": 2458, "index_chain": 2458, "chain_name": "A", "nt_resnum": 2705, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2705", "linked_nts": [ "///A/2704", "///A/2706" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -72.858, "beta": 178.216, "gamma": 52.754, "delta": 81.672, "epsilon": -157.588, "zeta": -71.106, "epsilon_zeta": -86.481, "bb_type": "BI", "chi": -162.899, "glyco_bond": "anti", "C5prime_xyz": [ -1.438, 8.783, 0.685 ], "P_xyz": [ 1.074, 9.288, 1.237 ], "form": "A", "ssZp": 4.371, "Dp": 4.492, "splay_angle": 25.513, "splay_distance": 4.084, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 161.477, "theta": -150.229, "eta_prime": 179.951, "theta_prime": -148.330, "eta_base": -120.904, "theta_base": -126.526, "v0": -0.195, "v1": -21.976, "v2": 34.489, "v3": -35.545, "v4": 22.522, "amplitude": 36.449, "phase_angle": 18.873, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.914, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 198.204, 121.537, 208.085 ], "x_axis": [ 0.811, -0.016, 0.585 ], "y_axis": [ 0.296, 0.874, -0.386 ], "z_axis": [ -0.505, 0.486, 0.714 ], "quaternion": [ 0.922, -0.237, -0.295, -0.085 ] } }, { "index": 2459, "index_chain": 2459, "chain_name": "A", "nt_resnum": 2706, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2706", "linked_nts": [ "///A/2705", "///A/2707" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.704, "beta": 178.842, "gamma": 56.933, "delta": 82.230, "epsilon": -155.444, "zeta": -73.181, "epsilon_zeta": -82.263, "bb_type": "BI", "chi": -160.129, "glyco_bond": "anti", "C5prime_xyz": [ -1.475, 8.808, 0.524 ], "P_xyz": [ 1.058, 9.324, 0.952 ], "form": "A", "ssZp": 4.285, "Dp": 4.477, "splay_angle": 21.714, "splay_distance": 3.515, "splay_ratio": 0.190, "d22": null, "d64": null, "eta": 173.653, "theta": -149.103, "eta_prime": -174.195, "theta_prime": -149.035, "eta_base": -141.645, "theta_base": -125.818, "v0": -0.280, "v1": -21.617, "v2": 34.071, "v3": -35.152, "v4": 22.355, "amplitude": 36.041, "phase_angle": 19.032, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.923, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 196.034, 121.882, 211.527 ], "x_axis": [ 0.892, 0.368, 0.260 ], "y_axis": [ -0.127, 0.759, -0.638 ], "z_axis": [ -0.433, 0.536, 0.725 ], "quaternion": [ 0.919, -0.320, -0.189, 0.135 ] } }, { "index": 2460, "index_chain": 2460, "chain_name": "A", "nt_resnum": 2707, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2707", "linked_nts": [ "///A/2706", "///A/2708" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -58.840, "beta": 175.270, "gamma": 46.598, "delta": 80.519, "epsilon": -169.910, "zeta": -87.110, "epsilon_zeta": -82.800, "bb_type": "BI", "chi": -155.152, "glyco_bond": "anti", "C5prime_xyz": [ -1.297, 8.854, 0.235 ], "P_xyz": [ 1.237, 9.368, 0.631 ], "form": "A", "ssZp": 4.202, "Dp": 4.390, "splay_angle": 23.949, "splay_distance": 3.869, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 168.335, "theta": -139.580, "eta_prime": -178.655, "theta_prime": -145.076, "eta_base": -142.145, "theta_base": -118.391, "v0": -1.095, "v1": -21.225, "v2": 34.276, "v3": -35.896, "v4": 23.346, "amplitude": 36.556, "phase_angle": 20.343, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.877, "filter_rmsd": 0.063, "frame": { "rmsd": 0.007, "origin": [ 195.125, 122.670, 214.829 ], "x_axis": [ 0.733, 0.658, -0.171 ], "y_axis": [ -0.592, 0.494, -0.637 ], "z_axis": [ -0.335, 0.568, 0.752 ], "quaternion": [ 0.863, -0.349, -0.048, 0.362 ] } }, { "index": 2461, "index_chain": 2461, "chain_name": "A", "nt_resnum": 2708, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2708", "linked_nts": [ "///A/2707", "///A/2709" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 157.335, "beta": -142.808, "gamma": 165.167, "delta": 83.084, "epsilon": -114.119, "zeta": -92.349, "epsilon_zeta": -21.770, "bb_type": "--", "chi": 172.906, "glyco_bond": "anti", "C5prime_xyz": [ -1.457, 8.187, 2.067 ], "P_xyz": [ 0.755, 9.346, 1.321 ], "form": "A", "ssZp": 4.647, "Dp": 4.672, "splay_angle": 24.257, "splay_distance": 3.928, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 168.837, "theta": -145.082, "eta_prime": -178.050, "theta_prime": -142.427, "eta_base": -135.119, "theta_base": -114.616, "v0": 2.143, "v1": -23.104, "v2": 34.193, "v3": -33.938, "v4": 20.079, "amplitude": 35.447, "phase_angle": 15.291, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.476, "filter_rmsd": 0.046, "frame": { "rmsd": 0.015, "origin": [ 195.234, 124.743, 218.094 ], "x_axis": [ 0.387, 0.711, -0.586 ], "y_axis": [ -0.862, 0.053, -0.505 ], "z_axis": [ -0.328, 0.701, 0.633 ], "quaternion": [ 0.720, -0.419, 0.090, 0.546 ] } }, { "index": 2462, "index_chain": 2462, "chain_name": "A", "nt_resnum": 2709, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2709", "linked_nts": [ "///A/2708", "///A/2710" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate", "alpha": -33.142, "beta": 158.316, "gamma": 33.206, "delta": 80.836, "epsilon": 168.690, "zeta": -82.591, "epsilon_zeta": -108.719, "bb_type": "BI", "chi": -154.394, "glyco_bond": "anti", "C5prime_xyz": [ -1.545, 8.890, 0.164 ], "P_xyz": [ 0.934, 9.488, 0.664 ], "form": ".", "ssZp": 3.958, "Dp": 4.069, "splay_angle": 22.549, "splay_distance": 3.707, "splay_ratio": 0.198, "d22": 4.866, "d64": 4.934, "eta": 163.166, "theta": -157.647, "eta_prime": -173.897, "theta_prime": -157.900, "eta_base": -128.903, "theta_base": -155.894, "v0": -4.105, "v1": -18.319, "v2": 32.458, "v3": -35.789, "v4": 25.189, "amplitude": 35.839, "phase_angle": 25.086, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.031, "filter_rmsd": 0.060, "frame": { "rmsd": 0.009, "origin": [ 195.941, 127.907, 220.312 ], "x_axis": [ -0.204, 0.540, -0.817 ], "y_axis": [ -0.938, -0.346, 0.007 ], "z_axis": [ -0.279, 0.768, 0.577 ], "quaternion": [ 0.507, -0.376, 0.265, 0.729 ] } }, { "index": 2463, "index_chain": 2463, "chain_name": "A", "nt_resnum": 2710, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2710", "linked_nts": [ "///A/2709", "///A/2711" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate", "alpha": 176.837, "beta": -156.669, "gamma": 170.573, "delta": 148.361, "epsilon": -97.512, "zeta": 143.291, "epsilon_zeta": 119.197, "bb_type": "BII", "chi": -153.716, "glyco_bond": "anti", "C5prime_xyz": [ -1.794, 8.687, 0.630 ], "P_xyz": [ 0.573, 9.641, 0.052 ], "form": ".", "ssZp": 0.788, "Dp": 0.849, "splay_angle": 50.351, "splay_distance": 8.111, "splay_ratio": 0.428, "d22": null, "d64": null, "eta": -130.477, "theta": 122.418, "eta_prime": -133.964, "theta_prime": 126.824, "eta_base": -135.402, "theta_base": 102.153, "v0": -21.435, "v1": 36.138, "v2": -36.194, "v3": 24.755, "v4": -2.300, "amplitude": 37.528, "phase_angle": 164.679, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.444, "filter_rmsd": 0.061, "frame": { "rmsd": 0.008, "origin": [ 197.402, 129.926, 223.057 ], "x_axis": [ -0.462, 0.332, -0.823 ], "y_axis": [ -0.861, -0.391, 0.326 ], "z_axis": [ -0.213, 0.859, 0.466 ], "quaternion": [ 0.392, -0.340, 0.389, 0.761 ] } }, { "index": 2464, "index_chain": 2464, "chain_name": "A", "nt_resnum": 2711, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2711", "linked_nts": [ "///A/2710", "///A/2712" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": 156.971, "beta": -134.537, "gamma": 59.790, "delta": 82.316, "epsilon": -174.253, "zeta": -78.050, "epsilon_zeta": -96.203, "bb_type": "BI", "chi": -144.960, "glyco_bond": "anti", "C5prime_xyz": [ -1.124, 8.680, -0.379 ], "P_xyz": [ 1.397, 8.812, 0.313 ], "form": "A", "ssZp": 3.997, "Dp": 4.453, "splay_angle": 21.770, "splay_distance": 3.639, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 116.764, "theta": -131.962, "eta_prime": 105.049, "theta_prime": -136.239, "eta_base": 96.560, "theta_base": -117.954, "v0": 4.815, "v1": -26.237, "v2": 36.571, "v3": -34.768, "v4": 18.916, "amplitude": 37.303, "phase_angle": 11.369, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 198.639, 122.084, 224.718 ], "x_axis": [ -0.549, 0.614, -0.566 ], "y_axis": [ -0.534, 0.263, 0.803 ], "z_axis": [ 0.643, 0.744, 0.184 ], "quaternion": [ 0.474, 0.032, 0.638, 0.606 ] } }, { "index": 2465, "index_chain": 2465, "chain_name": "A", "nt_resnum": 2712, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2712", "linked_nts": [ "///A/2711", "///A/2713" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": 159.788, "beta": -146.644, "gamma": 169.285, "delta": 82.464, "epsilon": -106.986, "zeta": -76.946, "epsilon_zeta": -30.040, "bb_type": "--", "chi": -164.032, "glyco_bond": "anti", "C5prime_xyz": [ -1.237, 8.677, 0.781 ], "P_xyz": [ 0.440, 9.758, -0.905 ], "form": ".", "ssZp": 4.280, "Dp": 4.727, "splay_angle": 35.872, "splay_distance": 5.704, "splay_ratio": 0.308, "d22": 3.828, "d64": 3.163, "eta": 175.832, "theta": -131.910, "eta_prime": -171.042, "theta_prime": -129.849, "eta_base": -138.150, "theta_base": -92.606, "v0": 3.011, "v1": -24.695, "v2": 35.806, "v3": -35.071, "v4": 20.211, "amplitude": 36.910, "phase_angle": 14.049, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.682, "filter_rmsd": 0.064, "frame": { "rmsd": 0.007, "origin": [ 200.738, 124.810, 223.535 ], "x_axis": [ -0.695, 0.695, -0.186 ], "y_axis": [ -0.144, 0.118, 0.982 ], "z_axis": [ 0.704, 0.710, 0.018 ], "quaternion": [ 0.332, 0.205, 0.670, 0.631 ] } }, { "index": 2466, "index_chain": 2466, "chain_name": "A", "nt_resnum": 2713, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2713", "linked_nts": [ "///A/2712", "///A/2714" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate", "alpha": -73.246, "beta": -177.821, "gamma": 48.335, "delta": 84.466, "epsilon": -131.040, "zeta": -30.717, "epsilon_zeta": -100.323, "bb_type": "--", "chi": -155.314, "glyco_bond": "anti", "C5prime_xyz": [ -1.263, 8.693, 0.284 ], "P_xyz": [ 1.275, 9.054, 0.810 ], "form": ".", "ssZp": 4.136, "Dp": 4.645, "splay_angle": 22.461, "splay_distance": 4.169, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 154.910, "theta": -107.750, "eta_prime": 174.826, "theta_prime": -121.736, "eta_base": -136.231, "theta_base": -117.908, "v0": 2.771, "v1": -23.520, "v2": 34.180, "v3": -33.563, "v4": 19.435, "amplitude": 35.264, "phase_angle": 14.245, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.221, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 200.300, 130.440, 224.335 ], "x_axis": [ -0.828, -0.241, 0.506 ], "y_axis": [ 0.559, -0.418, 0.716 ], "z_axis": [ 0.039, 0.876, 0.481 ], "quaternion": [ -0.242, 0.165, 0.482, 0.826 ] } }, { "index": 2467, "index_chain": 2467, "chain_name": "A", "nt_resnum": 2714, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2714", "linked_nts": [ "///A/2713", "///A/2715" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -133.337, "beta": 106.196, "gamma": 156.138, "delta": 81.529, "epsilon": -153.176, "zeta": -56.433, "epsilon_zeta": -96.742, "bb_type": "BI", "chi": 173.392, "glyco_bond": "anti", "C5prime_xyz": [ -2.023, 8.440, 1.906 ], "P_xyz": [ -1.584, 10.649, 0.562 ], "form": "A", "ssZp": 4.185, "Dp": 4.417, "splay_angle": 24.427, "splay_distance": 4.021, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": 173.516, "theta": 173.638, "eta_prime": -178.425, "theta_prime": -169.938, "eta_base": -156.525, "theta_base": -128.775, "v0": -3.908, "v1": -18.660, "v2": 32.701, "v3": -35.868, "v4": 25.088, "amplitude": 35.982, "phase_angle": 24.659, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.010, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 198.202, 133.959, 225.107 ], "x_axis": [ -0.609, -0.709, 0.357 ], "y_axis": [ 0.755, -0.379, 0.536 ], "z_axis": [ -0.244, 0.595, 0.766 ], "quaternion": [ -0.441, 0.034, 0.341, 0.830 ] } }, { "index": 2468, "index_chain": 2468, "chain_name": "A", "nt_resnum": 2715, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2715", "linked_nts": [ "///A/2714", "///A/2716" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -78.181, "beta": -158.473, "gamma": 41.798, "delta": 82.420, "epsilon": -153.324, "zeta": -69.793, "epsilon_zeta": -83.531, "bb_type": "BI", "chi": -155.908, "glyco_bond": "anti", "C5prime_xyz": [ -1.373, 8.843, 0.312 ], "P_xyz": [ 0.854, 9.539, 1.502 ], "form": "A", "ssZp": 4.204, "Dp": 4.478, "splay_angle": 23.569, "splay_distance": 3.768, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 163.742, "theta": -149.074, "eta_prime": 177.867, "theta_prime": -144.135, "eta_base": -133.515, "theta_base": -107.492, "v0": -0.891, "v1": -20.753, "v2": 33.292, "v3": -34.727, "v4": 22.472, "amplitude": 35.433, "phase_angle": 20.022, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.476, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 195.218, 135.742, 227.127 ], "x_axis": [ 0.092, -0.800, 0.593 ], "y_axis": [ 0.980, 0.179, 0.090 ], "z_axis": [ -0.178, 0.572, 0.801 ], "quaternion": [ 0.720, -0.168, -0.268, -0.618 ] } }, { "index": 2469, "index_chain": 2469, "chain_name": "A", "nt_resnum": 2716, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2716", "linked_nts": [ "///A/2715", "///A/2717" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -65.034, "beta": 171.334, "gamma": 48.486, "delta": 71.406, "epsilon": 87.601, "zeta": 72.083, "epsilon_zeta": 15.518, "bb_type": "--", "chi": -160.828, "glyco_bond": "anti", "C5prime_xyz": [ -1.366, 8.690, 0.558 ], "P_xyz": [ 1.200, 9.122, 0.594 ], "form": ".", "ssZp": 3.604, "Dp": 3.638, "splay_angle": 31.283, "splay_distance": 5.158, "splay_ratio": 0.271, "d22": null, "d64": null, "eta": -179.916, "theta": -96.309, "eta_prime": -160.108, "theta_prime": -111.835, "eta_base": -114.054, "theta_base": -61.698, "v0": 4.925, "v1": -29.499, "v2": 41.837, "v3": -39.970, "v4": 22.086, "amplitude": 42.789, "phase_angle": 12.112, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.720, "filter_rmsd": 0.105, "frame": { "rmsd": 0.009, "origin": [ 194.126, 136.789, 230.578 ], "x_axis": [ 0.647, -0.591, 0.483 ], "y_axis": [ 0.749, 0.613, -0.253 ], "z_axis": [ -0.146, 0.525, 0.838 ], "quaternion": [ 0.880, -0.221, -0.179, -0.381 ] } }, { "index": 2470, "index_chain": 2470, "chain_name": "A", "nt_resnum": 2717, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2717", "linked_nts": [ "///A/2716", "///A/2718" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart", "alpha": 62.489, "beta": -150.720, "gamma": 173.795, "delta": 82.914, "epsilon": -135.339, "zeta": 136.667, "epsilon_zeta": 87.993, "bb_type": "--", "chi": -172.492, "glyco_bond": "anti", "C5prime_xyz": [ -1.002, 8.372, 1.207 ], "P_xyz": [ 0.553, 9.772, -0.371 ], "form": ".", "ssZp": 4.731, "Dp": 4.794, "splay_angle": 143.651, "splay_distance": 18.527, "splay_ratio": 0.951, "d22": null, "d64": null, "eta": 131.157, "theta": 76.045, "eta_prime": 170.586, "theta_prime": 50.858, "eta_base": -107.335, "theta_base": 8.579, "v0": 8.980, "v1": -30.179, "v2": 38.816, "v3": -34.671, "v4": 16.274, "amplitude": 39.004, "phase_angle": 5.635, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 197.166, 137.327, 234.710 ], "x_axis": [ 0.984, 0.175, 0.025 ], "y_axis": [ -0.142, 0.865, -0.482 ], "z_axis": [ -0.106, 0.471, 0.876 ], "quaternion": [ 0.965, -0.247, -0.034, 0.082 ] } }, { "index": 2471, "index_chain": 2471, "chain_name": "A", "nt_resnum": 2718, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2718", "linked_nts": [ "///A/2717", "///A/2719" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": 40.942, "beta": 153.998, "gamma": -158.395, "delta": 146.692, "epsilon": -148.570, "zeta": 111.328, "epsilon_zeta": 100.101, "bb_type": "--", "chi": -161.092, "glyco_bond": "anti", "C5prime_xyz": [ -2.063, 8.555, 0.987 ], "P_xyz": [ -1.194, 10.999, 0.719 ], "form": ".", "ssZp": 1.386, "Dp": 1.912, "splay_angle": 141.182, "splay_distance": 17.162, "splay_ratio": 0.943, "d22": null, "d64": null, "eta": 118.403, "theta": 61.907, "eta_prime": 117.120, "theta_prime": 59.082, "eta_base": 153.020, "theta_base": -152.775, "v0": -22.174, "v1": 36.055, "v2": -35.411, "v3": 23.540, "v4": -1.074, "amplitude": 37.057, "phase_angle": 162.858, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.100, "frame": { "rmsd": 0.009, "origin": [ 190.925, 154.260, 230.516 ], "x_axis": [ 0.673, -0.098, -0.733 ], "y_axis": [ 0.338, -0.841, 0.423 ], "z_axis": [ -0.658, -0.533, -0.533 ], "quaternion": [ 0.274, 0.873, 0.069, -0.398 ] } }, { "index": 2472, "index_chain": 2472, "chain_name": "A", "nt_resnum": 2719, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2719", "linked_nts": [ "///A/2718", "///A/2720" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": 56.833, "beta": 149.771, "gamma": 64.991, "delta": 148.960, "epsilon": -82.006, "zeta": -118.759, "epsilon_zeta": 36.753, "bb_type": "--", "chi": -137.891, "glyco_bond": "anti", "C5prime_xyz": [ -2.003, 8.689, -0.229 ], "P_xyz": [ 0.553, 8.954, 0.309 ], "form": ".", "ssZp": 0.433, "Dp": 0.456, "splay_angle": 140.331, "splay_distance": 18.229, "splay_ratio": 0.941, "d22": null, "d64": null, "eta": -21.991, "theta": -46.679, "eta_prime": -8.437, "theta_prime": -79.045, "eta_base": -155.722, "theta_base": -52.759, "v0": -22.698, "v1": 37.447, "v2": -36.993, "v3": 24.854, "v4": -1.563, "amplitude": 38.582, "phase_angle": 163.498, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "6p", "suiteness": 0.062, "filter_rmsd": 0.039, "frame": { "rmsd": 0.009, "origin": [ 180.225, 146.448, 241.426 ], "x_axis": [ -0.472, 0.264, -0.841 ], "y_axis": [ 0.873, 0.275, -0.403 ], "z_axis": [ 0.125, -0.925, -0.360 ], "quaternion": [ 0.333, 0.392, 0.726, -0.457 ] } }, { "index": 2473, "index_chain": 2473, "chain_name": "A", "nt_resnum": 2720, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2720", "linked_nts": [ "///A/2719", "///A/2721" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-donor,splayed-apart", "alpha": 53.061, "beta": 143.798, "gamma": -18.571, "delta": 83.556, "epsilon": -155.899, "zeta": -67.298, "epsilon_zeta": -88.600, "bb_type": "BI", "chi": -167.538, "glyco_bond": "anti", "C5prime_xyz": [ -1.238, 8.642, 0.988 ], "P_xyz": [ 0.591, 9.059, 2.810 ], "form": "A", "ssZp": 4.493, "Dp": 4.553, "splay_angle": 24.562, "splay_distance": 3.991, "splay_ratio": 0.217, "d22": 4.720, "d64": 4.943, "eta": 171.981, "theta": -153.176, "eta_prime": -149.831, "theta_prime": -147.145, "eta_base": -136.066, "theta_base": -126.417, "v0": 3.043, "v1": -24.425, "v2": 35.312, "v3": -34.526, "v4": 19.877, "amplitude": 36.380, "phase_angle": 13.919, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 198.130, 143.475, 239.732 ], "x_axis": [ -0.089, 0.745, -0.661 ], "y_axis": [ -0.971, 0.082, 0.224 ], "z_axis": [ 0.222, 0.662, 0.716 ], "quaternion": [ 0.654, -0.167, 0.337, 0.656 ] } }, { "index": 2474, "index_chain": 2474, "chain_name": "A", "nt_resnum": 2721, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2721", "linked_nts": [ "///A/2720", "///A/2722" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -79.029, "beta": -176.465, "gamma": 58.041, "delta": 78.179, "epsilon": -152.944, "zeta": -68.185, "epsilon_zeta": -84.759, "bb_type": "BI", "chi": -166.373, "glyco_bond": "anti", "C5prime_xyz": [ -1.442, 8.790, 0.850 ], "P_xyz": [ 1.047, 9.455, 1.299 ], "form": "A", "ssZp": 4.545, "Dp": 4.601, "splay_angle": 25.624, "splay_distance": 4.043, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 165.081, "theta": -148.592, "eta_prime": 175.534, "theta_prime": -145.639, "eta_base": -156.795, "theta_base": -115.564, "v0": -0.576, "v1": -23.073, "v2": 36.592, "v3": -37.897, "v4": 24.260, "amplitude": 38.795, "phase_angle": 19.400, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.776, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 201.048, 145.338, 241.719 ], "x_axis": [ -0.541, 0.606, -0.584 ], "y_axis": [ -0.827, -0.257, 0.500 ], "z_axis": [ 0.153, 0.753, 0.640 ], "quaternion": [ 0.459, -0.138, 0.401, 0.781 ] } }, { "index": 2475, "index_chain": 2475, "chain_name": "A", "nt_resnum": 2722, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2722", "linked_nts": [ "///A/2721", "///A/2723" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -71.673, "beta": 175.609, "gamma": 62.199, "delta": 81.203, "epsilon": -156.686, "zeta": -73.877, "epsilon_zeta": -82.809, "bb_type": "BI", "chi": -168.834, "glyco_bond": "anti", "C5prime_xyz": [ -1.497, 8.647, 1.016 ], "P_xyz": [ 1.057, 9.165, 1.302 ], "form": "A", "ssZp": 4.529, "Dp": 4.554, "splay_angle": 26.033, "splay_distance": 4.057, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 169.658, "theta": -152.592, "eta_prime": -174.901, "theta_prime": -151.731, "eta_base": -130.803, "theta_base": -130.651, "v0": 0.357, "v1": -22.684, "v2": 35.101, "v3": -35.839, "v4": 22.402, "amplitude": 36.917, "phase_angle": 18.048, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.829, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 202.082, 149.152, 242.570 ], "x_axis": [ -0.925, 0.264, -0.272 ], "y_axis": [ -0.377, -0.572, 0.729 ], "z_axis": [ 0.037, 0.777, 0.629 ], "quaternion": [ 0.181, -0.066, 0.426, 0.884 ] } }, { "index": 2476, "index_chain": 2476, "chain_name": "A", "nt_resnum": 2723, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2723", "linked_nts": [ "///A/2722", "///A/2724" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": -75.319, "beta": 178.008, "gamma": 64.581, "delta": 83.038, "epsilon": -154.520, "zeta": -57.959, "epsilon_zeta": -96.561, "bb_type": "BI", "chi": -165.611, "glyco_bond": "anti", "C5prime_xyz": [ -1.305, 8.696, 0.850 ], "P_xyz": [ 1.280, 9.051, 1.044 ], "form": "A", "ssZp": 4.479, "Dp": 4.559, "splay_angle": 23.665, "splay_distance": 3.800, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 172.295, "theta": -133.971, "eta_prime": -176.285, "theta_prime": -134.941, "eta_base": -143.241, "theta_base": -100.463, "v0": 1.693, "v1": -23.350, "v2": 34.874, "v3": -34.817, "v4": 20.910, "amplitude": 36.271, "phase_angle": 15.954, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.723, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 202.842, 153.048, 243.410 ], "x_axis": [ -0.989, -0.087, 0.116 ], "y_axis": [ 0.145, -0.631, 0.762 ], "z_axis": [ 0.008, 0.771, 0.637 ], "quaternion": [ -0.064, 0.034, 0.424, 0.903 ] } }, { "index": 2477, "index_chain": 2477, "chain_name": "A", "nt_resnum": 2724, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2724", "linked_nts": [ "///A/2723", "///A/2725" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,cap-donor", "alpha": -78.532, "beta": 174.766, "gamma": 64.263, "delta": 79.149, "epsilon": -160.147, "zeta": -90.229, "epsilon_zeta": -69.918, "bb_type": "BI", "chi": -164.306, "glyco_bond": "anti", "C5prime_xyz": [ -1.558, 8.743, 0.745 ], "P_xyz": [ 0.981, 9.375, 0.776 ], "form": ".", "ssZp": 4.486, "Dp": 4.547, "splay_angle": 32.930, "splay_distance": 5.219, "splay_ratio": 0.287, "d22": 5.835, "d64": 6.032, "eta": 163.216, "theta": -173.413, "eta_prime": -175.163, "theta_prime": -171.375, "eta_base": -118.314, "theta_base": -178.323, "v0": 0.057, "v1": -23.409, "v2": 36.509, "v3": -37.474, "v4": 23.575, "amplitude": 38.497, "phase_angle": 18.494, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.654, "filter_rmsd": 0.102, "frame": { "rmsd": 0.007, "origin": [ 200.836, 155.905, 244.911 ], "x_axis": [ -0.676, -0.464, 0.573 ], "y_axis": [ 0.736, -0.388, 0.554 ], "z_axis": [ -0.034, 0.796, 0.604 ], "quaternion": [ -0.367, 0.165, 0.413, 0.817 ] } }, { "index": 2478, "index_chain": 2478, "chain_name": "A", "nt_resnum": 2725, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2725", "linked_nts": [ "///A/2724", "///A/2726" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -73.818, "beta": -172.583, "gamma": 55.561, "delta": 83.212, "epsilon": -156.707, "zeta": -68.972, "epsilon_zeta": -87.735, "bb_type": "BI", "chi": -152.964, "glyco_bond": "anti", "C5prime_xyz": [ -1.440, 8.803, 0.091 ], "P_xyz": [ 1.061, 9.439, 0.523 ], "form": "A", "ssZp": 4.102, "Dp": 4.437, "splay_angle": 25.354, "splay_distance": 4.126, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 174.821, "theta": -147.276, "eta_prime": 172.109, "theta_prime": -146.524, "eta_base": 165.328, "theta_base": -120.772, "v0": -0.772, "v1": -20.748, "v2": 33.091, "v3": -34.427, "v4": 22.244, "amplitude": 35.173, "phase_angle": 19.815, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.654, "filter_rmsd": 0.100, "frame": { "rmsd": 0.009, "origin": [ 200.991, 160.900, 243.405 ], "x_axis": [ -0.521, -0.731, 0.440 ], "y_axis": [ 0.794, -0.227, 0.563 ], "z_axis": [ -0.312, 0.643, 0.699 ], "quaternion": [ -0.488, 0.041, 0.386, 0.782 ] } }, { "index": 2479, "index_chain": 2479, "chain_name": "A", "nt_resnum": 2726, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2726", "linked_nts": [ "///A/2725", "///A/2727" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -69.142, "beta": 174.258, "gamma": 53.486, "delta": 80.530, "epsilon": -141.491, "zeta": -75.256, "epsilon_zeta": -66.235, "bb_type": "BI", "chi": -164.917, "glyco_bond": "anti", "C5prime_xyz": [ -1.664, 8.769, 0.795 ], "P_xyz": [ 0.833, 9.396, 1.244 ], "form": "A", "ssZp": 4.462, "Dp": 4.612, "splay_angle": 22.801, "splay_distance": 3.655, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 167.026, "theta": -142.663, "eta_prime": 179.505, "theta_prime": -139.658, "eta_base": -142.517, "theta_base": -102.187, "v0": -0.660, "v1": -22.250, "v2": 35.373, "v3": -36.731, "v4": 23.562, "amplitude": 37.542, "phase_angle": 19.571, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.937, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 198.570, 163.098, 245.923 ], "x_axis": [ 0.018, -0.883, 0.469 ], "y_axis": [ 0.973, 0.123, 0.195 ], "z_axis": [ -0.230, 0.453, 0.861 ], "quaternion": [ 0.708, -0.091, -0.247, -0.656 ] } }, { "index": 2480, "index_chain": 2480, "chain_name": "A", "nt_resnum": 2727, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2727", "linked_nts": [ "///A/2726", "///A/2728" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -63.124, "beta": 159.242, "gamma": 64.435, "delta": 82.030, "epsilon": -152.445, "zeta": -71.087, "epsilon_zeta": -81.358, "bb_type": "BI", "chi": -163.672, "glyco_bond": "anti", "C5prime_xyz": [ -1.677, 8.778, 0.706 ], "P_xyz": [ 0.872, 9.330, 0.618 ], "form": "A", "ssZp": 4.330, "Dp": 4.460, "splay_angle": 18.805, "splay_distance": 3.071, "splay_ratio": 0.165, "d22": 4.102, "d64": 3.954, "eta": 168.133, "theta": -144.678, "eta_prime": -172.435, "theta_prime": -148.327, "eta_base": -119.283, "theta_base": -122.003, "v0": -2.648, "v1": -19.725, "v2": 33.215, "v3": -35.665, "v4": 24.193, "amplitude": 36.007, "phase_angle": 22.709, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.734, "filter_rmsd": 0.102, "frame": { "rmsd": 0.009, "origin": [ 197.166, 162.861, 249.289 ], "x_axis": [ 0.633, -0.653, 0.415 ], "y_axis": [ 0.735, 0.676, -0.058 ], "z_axis": [ -0.243, 0.342, 0.908 ], "quaternion": [ 0.897, -0.112, -0.183, -0.387 ] } }, { "index": 2481, "index_chain": 2481, "chain_name": "A", "nt_resnum": 2728, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2728", "linked_nts": [ "///A/2727", "///A/2729" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -70.848, "beta": 167.963, "gamma": 60.228, "delta": 81.764, "epsilon": -160.614, "zeta": -73.396, "epsilon_zeta": -87.218, "bb_type": "BI", "chi": -160.078, "glyco_bond": "anti", "C5prime_xyz": [ -1.701, 8.814, 0.491 ], "P_xyz": [ 0.821, 9.471, 0.616 ], "form": "A", "ssZp": 4.238, "Dp": 4.392, "splay_angle": 22.578, "splay_distance": 3.655, "splay_ratio": 0.197, "d22": 4.509, "d64": 4.508, "eta": 163.969, "theta": -153.634, "eta_prime": -179.493, "theta_prime": -156.563, "eta_base": -135.420, "theta_base": -137.348, "v0": -2.811, "v1": -19.518, "v2": 33.033, "v3": -35.596, "v4": 24.252, "amplitude": 35.884, "phase_angle": 22.994, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.892, "filter_rmsd": 0.105, "frame": { "rmsd": 0.008, "origin": [ 196.023, 162.480, 252.114 ], "x_axis": [ 0.945, -0.202, 0.256 ], "y_axis": [ 0.249, 0.953, -0.169 ], "z_axis": [ -0.210, 0.224, 0.952 ], "quaternion": [ 0.981, -0.100, -0.119, -0.115 ] } }, { "index": 2482, "index_chain": 2482, "chain_name": "A", "nt_resnum": 2729, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2729", "linked_nts": [ "///A/2728", "///A/2730" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -70.570, "beta": 174.249, "gamma": 57.343, "delta": 82.143, "epsilon": -173.088, "zeta": -75.036, "epsilon_zeta": -98.052, "bb_type": "BI", "chi": -164.379, "glyco_bond": "anti", "C5prime_xyz": [ -1.455, 8.815, 0.744 ], "P_xyz": [ 1.079, 9.355, 1.166 ], "form": ".", "ssZp": 4.257, "Dp": 4.305, "splay_angle": 24.670, "splay_distance": 4.240, "splay_ratio": 0.223, "d22": 4.778, "d64": 5.262, "eta": 166.241, "theta": -137.956, "eta_prime": 179.059, "theta_prime": -149.772, "eta_base": -146.720, "theta_base": -141.100, "v0": -2.684, "v1": -19.209, "v2": 32.488, "v3": -34.924, "v4": 23.724, "amplitude": 35.253, "phase_angle": 22.845, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.872, "filter_rmsd": 0.063, "frame": { "rmsd": 0.007, "origin": [ 194.747, 161.672, 255.442 ], "x_axis": [ 0.967, 0.253, 0.036 ], "y_axis": [ -0.234, 0.932, -0.277 ], "z_axis": [ -0.104, 0.259, 0.960 ], "quaternion": [ 0.982, -0.136, -0.036, 0.124 ] } }, { "index": 2483, "index_chain": 2483, "chain_name": "A", "nt_resnum": 2730, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2730", "linked_nts": [ "///A/2729", "///A/2731" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,kissing-loop", "alpha": 164.153, "beta": -170.229, "gamma": 168.867, "delta": 81.989, "epsilon": -114.670, "zeta": 43.081, "epsilon_zeta": 202.249, "bb_type": "--", "chi": 176.310, "glyco_bond": "anti", "C5prime_xyz": [ -1.362, 8.279, 1.906 ], "P_xyz": [ 0.497, 10.020, 1.376 ], "form": ".", "ssZp": 4.696, "Dp": 4.718, "splay_angle": 82.713, "splay_distance": 11.920, "splay_ratio": 0.661, "d22": null, "d64": null, "eta": 167.273, "theta": -37.370, "eta_prime": 174.251, "theta_prime": -65.967, "eta_base": -161.939, "theta_base": -124.125, "v0": 2.514, "v1": -23.699, "v2": 34.767, "v3": -34.252, "v4": 20.009, "amplitude": 35.941, "phase_angle": 14.688, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.730, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 194.531, 159.814, 259.247 ], "x_axis": [ 0.815, 0.557, -0.161 ], "y_axis": [ -0.578, 0.761, -0.295 ], "z_axis": [ -0.042, 0.333, 0.942 ], "quaternion": [ 0.938, -0.168, 0.032, 0.303 ] } }, { "index": 2484, "index_chain": 2484, "chain_name": "A", "nt_resnum": 2731, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2731", "linked_nts": [ "///A/2730", "///A/2732" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop", "alpha": -101.284, "beta": -128.320, "gamma": 169.479, "delta": 83.277, "epsilon": -115.867, "zeta": -75.146, "epsilon_zeta": -40.721, "bb_type": "--", "chi": 160.527, "glyco_bond": "anti", "C5prime_xyz": [ -1.625, 7.796, 2.636 ], "P_xyz": [ 0.679, 8.926, 2.093 ], "form": "A", "ssZp": 4.573, "Dp": 4.724, "splay_angle": 25.659, "splay_distance": 3.961, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": -56.292, "theta": -132.256, "eta_prime": -3.807, "theta_prime": -134.278, "eta_base": 52.270, "theta_base": -95.097, "v0": 4.562, "v1": -25.384, "v2": 35.457, "v3": -33.795, "v4": 18.454, "amplitude": 36.190, "phase_angle": 11.551, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.016, "frame": { "rmsd": 0.016, "origin": [ 192.516, 164.359, 270.081 ], "x_axis": [ -0.538, -0.809, 0.238 ], "y_axis": [ -0.635, 0.202, -0.746 ], "z_axis": [ 0.555, -0.552, -0.622 ], "quaternion": [ 0.103, -0.470, 0.768, -0.422 ] } }, { "index": 2485, "index_chain": 2485, "chain_name": "A", "nt_resnum": 2732, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2732", "linked_nts": [ "///A/2731", "///A/2733" ], "nt_type": "RNA", "dbn": "}", "summary": "pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,kissing-loop", "alpha": -67.180, "beta": 178.228, "gamma": 46.829, "delta": 83.121, "epsilon": -146.131, "zeta": -73.530, "epsilon_zeta": -72.601, "bb_type": "BI", "chi": -165.584, "glyco_bond": "anti", "C5prime_xyz": [ -1.181, 8.658, 0.884 ], "P_xyz": [ 1.328, 8.906, 1.570 ], "form": "A", "ssZp": 4.516, "Dp": 4.620, "splay_angle": 26.030, "splay_distance": 4.106, "splay_ratio": 0.226, "d22": 4.370, "d64": 4.251, "eta": 155.898, "theta": -143.425, "eta_prime": 175.898, "theta_prime": -140.182, "eta_base": -123.584, "theta_base": -116.338, "v0": 2.311, "v1": -23.607, "v2": 34.704, "v3": -34.367, "v4": 20.234, "amplitude": 35.934, "phase_angle": 15.032, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.436, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 194.016, 160.790, 269.243 ], "x_axis": [ -0.874, -0.295, -0.385 ], "y_axis": [ 0.018, 0.774, -0.633 ], "z_axis": [ 0.485, -0.561, -0.671 ], "quaternion": [ 0.239, -0.076, 0.911, -0.328 ] } }, { "index": 2486, "index_chain": 2486, "chain_name": "A", "nt_resnum": 2733, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2733", "linked_nts": [ "///A/2732", "///A/2734" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,kissing-loop", "alpha": -74.850, "beta": -176.651, "gamma": 54.317, "delta": 83.869, "epsilon": -143.587, "zeta": -61.165, "epsilon_zeta": -82.422, "bb_type": "BI", "chi": -167.632, "glyco_bond": "anti", "C5prime_xyz": [ -1.381, 8.685, 0.974 ], "P_xyz": [ 1.094, 9.033, 1.743 ], "form": ".", "ssZp": 4.473, "Dp": 4.574, "splay_angle": 30.936, "splay_distance": 4.703, "splay_ratio": 0.268, "d22": null, "d64": null, "eta": 167.331, "theta": -128.271, "eta_prime": 178.065, "theta_prime": -124.127, "eta_base": -147.753, "theta_base": -65.602, "v0": 0.512, "v1": -21.759, "v2": 33.456, "v3": -34.105, "v4": 21.188, "amplitude": 35.135, "phase_angle": 17.782, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.881, "filter_rmsd": 0.063, "frame": { "rmsd": 0.005, "origin": [ 195.176, 157.372, 267.286 ], "x_axis": [ -0.854, 0.382, -0.353 ], "y_axis": [ 0.484, 0.832, -0.271 ], "z_axis": [ 0.190, -0.402, -0.896 ], "quaternion": [ 0.143, 0.229, 0.946, -0.178 ] } }, { "index": 2487, "index_chain": 2487, "chain_name": "A", "nt_resnum": 2734, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2734", "linked_nts": [ "///A/2733", "///A/2735" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,kissing-loop", "alpha": -73.989, "beta": 168.670, "gamma": 57.723, "delta": 85.168, "epsilon": -138.064, "zeta": -65.504, "epsilon_zeta": -72.560, "bb_type": "BI", "chi": -164.851, "glyco_bond": "anti", "C5prime_xyz": [ -0.973, 8.459, 0.824 ], "P_xyz": [ 1.654, 8.387, 0.766 ], "form": ".", "ssZp": 4.558, "Dp": 4.740, "splay_angle": 32.053, "splay_distance": 4.878, "splay_ratio": 0.276, "d22": null, "d64": null, "eta": 159.646, "theta": -125.115, "eta_prime": -175.189, "theta_prime": -123.219, "eta_base": -95.180, "theta_base": -87.765, "v0": 7.765, "v1": -27.718, "v2": 36.029, "v3": -32.528, "v4": 15.661, "amplitude": 36.265, "phase_angle": 6.537, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.840, "filter_rmsd": 0.040, "frame": { "rmsd": 0.011, "origin": [ 193.906, 158.413, 262.879 ], "x_axis": [ -0.006, 0.916, -0.401 ], "y_axis": [ 0.990, 0.061, 0.124 ], "z_axis": [ 0.138, -0.397, -0.907 ], "quaternion": [ 0.192, 0.678, 0.703, -0.097 ] } }, { "index": 2488, "index_chain": 2488, "chain_name": "A", "nt_resnum": 2735, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2735", "linked_nts": [ "///A/2734", "///A/2736" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,kissing-loop", "alpha": -66.315, "beta": 162.330, "gamma": 66.924, "delta": 80.898, "epsilon": -157.063, "zeta": -58.532, "epsilon_zeta": -98.531, "bb_type": "BI", "chi": -169.621, "glyco_bond": "anti", "C5prime_xyz": [ -1.137, 8.529, 1.076 ], "P_xyz": [ 1.452, 8.753, 0.754 ], "form": ".", "ssZp": 4.610, "Dp": 4.632, "splay_angle": 19.991, "splay_distance": 3.844, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 165.077, "theta": -112.719, "eta_prime": -167.321, "theta_prime": -128.683, "eta_base": -104.021, "theta_base": -113.319, "v0": 5.033, "v1": -27.181, "v2": 37.831, "v3": -35.881, "v4": 19.482, "amplitude": 38.571, "phase_angle": 11.245, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.642, "filter_rmsd": 0.045, "frame": { "rmsd": 0.012, "origin": [ 194.544, 159.697, 258.216 ], "x_axis": [ 0.736, 0.654, -0.176 ], "y_axis": [ 0.663, -0.643, 0.384 ], "z_axis": [ 0.137, -0.399, -0.907 ], "quaternion": [ 0.216, 0.906, 0.363, -0.011 ] } }, { "index": 2489, "index_chain": 2489, "chain_name": "A", "nt_resnum": 2736, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2736", "linked_nts": [ "///A/2735", "///A/2737" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 162.961, "beta": -179.051, "gamma": 172.389, "delta": 82.088, "epsilon": -153.339, "zeta": -72.705, "epsilon_zeta": -80.635, "bb_type": "BI", "chi": -173.308, "glyco_bond": "anti", "C5prime_xyz": [ -1.259, 8.514, 1.280 ], "P_xyz": [ 0.066, 10.462, 0.115 ], "form": "A", "ssZp": 4.648, "Dp": 4.640, "splay_angle": 24.732, "splay_distance": 3.860, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 160.141, "theta": -179.007, "eta_prime": 179.121, "theta_prime": -173.609, "eta_base": -137.218, "theta_base": -150.574, "v0": 4.408, "v1": -26.024, "v2": 36.566, "v3": -34.994, "v4": 19.310, "amplitude": 37.379, "phase_angle": 11.976, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.783, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 194.568, 161.710, 254.941 ], "x_axis": [ 0.962, 0.266, 0.058 ], "y_axis": [ 0.249, -0.946, 0.208 ], "z_axis": [ 0.111, -0.186, -0.976 ], "quaternion": [ 0.100, 0.985, 0.131, 0.043 ] } }, { "index": 2490, "index_chain": 2490, "chain_name": "A", "nt_resnum": 2737, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2737", "linked_nts": [ "///A/2736", "///A/2738" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -70.128, "beta": 172.515, "gamma": 62.840, "delta": 80.359, "epsilon": -147.808, "zeta": -67.684, "epsilon_zeta": -80.124, "bb_type": "BI", "chi": -174.378, "glyco_bond": "anti", "C5prime_xyz": [ -1.494, 8.576, 1.336 ], "P_xyz": [ 1.069, 9.019, 1.622 ], "form": "A", "ssZp": 4.656, "Dp": 4.654, "splay_angle": 25.999, "splay_distance": 4.149, "splay_ratio": 0.231, "d22": null, "d64": null, "eta": 171.038, "theta": -140.299, "eta_prime": -176.463, "theta_prime": -140.163, "eta_base": -143.596, "theta_base": -113.887, "v0": 1.894, "v1": -24.628, "v2": 36.731, "v3": -36.627, "v4": 21.902, "amplitude": 38.175, "phase_angle": 15.809, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.826, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 194.428, 163.238, 251.399 ], "x_axis": [ 0.967, -0.202, 0.153 ], "y_axis": [ -0.228, -0.959, 0.171 ], "z_axis": [ 0.112, -0.201, -0.973 ], "quaternion": [ 0.094, 0.987, -0.109, 0.067 ] } }, { "index": 2491, "index_chain": 2491, "chain_name": "A", "nt_resnum": 2738, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2738", "linked_nts": [ "///A/2737", "///A/2739" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -69.339, "beta": -174.725, "gamma": 50.246, "delta": 81.511, "epsilon": -148.362, "zeta": -73.307, "epsilon_zeta": -75.055, "bb_type": "BI", "chi": -173.107, "glyco_bond": "anti", "C5prime_xyz": [ -1.612, 8.651, 1.273 ], "P_xyz": [ 0.706, 9.135, 2.378 ], "form": "A", "ssZp": 4.510, "Dp": 4.546, "splay_angle": 23.961, "splay_distance": 3.770, "splay_ratio": 0.209, "d22": null, "d64": null, "eta": 168.782, "theta": -146.605, "eta_prime": -179.254, "theta_prime": -142.179, "eta_base": -138.027, "theta_base": -107.032, "v0": -0.845, "v1": -21.318, "v2": 34.052, "v3": -35.492, "v4": 22.968, "amplitude": 36.220, "phase_angle": 19.923, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.921, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 196.517, 164.050, 247.907 ], "x_axis": [ 0.574, -0.629, 0.524 ], "y_axis": [ -0.783, -0.608, 0.129 ], "z_axis": [ 0.238, -0.484, -0.842 ], "quaternion": [ 0.176, 0.870, -0.406, 0.219 ] } }, { "index": 2492, "index_chain": 2492, "chain_name": "A", "nt_resnum": 2739, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2739", "linked_nts": [ "///A/2738", "///A/2740" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.242, "beta": 175.301, "gamma": 48.190, "delta": 81.820, "epsilon": -142.114, "zeta": -77.671, "epsilon_zeta": -64.443, "bb_type": "BI", "chi": -164.546, "glyco_bond": "anti", "C5prime_xyz": [ -1.318, 8.725, 0.810 ], "P_xyz": [ 1.200, 9.051, 1.423 ], "form": "A", "ssZp": 4.468, "Dp": 4.631, "splay_angle": 15.783, "splay_distance": 2.602, "splay_ratio": 0.140, "d22": null, "d64": null, "eta": 169.895, "theta": -144.998, "eta_prime": -177.185, "theta_prime": -143.647, "eta_base": -131.119, "theta_base": -125.053, "v0": 1.613, "v1": -23.631, "v2": 35.432, "v3": -35.470, "v4": 21.368, "amplitude": 36.889, "phase_angle": 16.157, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.938, "filter_rmsd": 0.063, "frame": { "rmsd": 0.010, "origin": [ 198.906, 162.597, 245.379 ], "x_axis": [ -0.054, -0.842, 0.537 ], "y_axis": [ -0.976, -0.068, -0.205 ], "z_axis": [ 0.209, -0.536, -0.818 ], "quaternion": [ 0.122, 0.677, -0.672, 0.276 ] } }, { "index": 2493, "index_chain": 2493, "chain_name": "A", "nt_resnum": 2740, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2740", "linked_nts": [ "///A/2739", "///A/2741" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart", "alpha": -63.199, "beta": 157.419, "gamma": 64.725, "delta": 79.238, "epsilon": -162.286, "zeta": 88.361, "epsilon_zeta": 109.352, "bb_type": "--", "chi": -151.222, "glyco_bond": "anti", "C5prime_xyz": [ -1.710, 8.880, -0.061 ], "P_xyz": [ 0.731, 9.492, -0.720 ], "form": ".", "ssZp": 4.120, "Dp": 4.429, "splay_angle": 121.835, "splay_distance": 15.806, "splay_ratio": 0.874, "d22": null, "d64": null, "eta": 166.276, "theta": 33.129, "eta_prime": -176.071, "theta_prime": -36.991, "eta_base": -142.766, "theta_base": -135.710, "v0": -4.100, "v1": -19.209, "v2": 33.776, "v3": -37.105, "v4": 26.041, "amplitude": 37.208, "phase_angle": 24.802, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.706, "filter_rmsd": 0.045, "frame": { "rmsd": 0.009, "origin": [ 200.706, 161.242, 244.077 ], "x_axis": [ -0.435, -0.837, 0.331 ], "y_axis": [ -0.747, 0.131, -0.652 ], "z_axis": [ 0.503, -0.531, -0.682 ], "quaternion": [ 0.058, -0.528, 0.750, -0.394 ] } }, { "index": 2494, "index_chain": 2494, "chain_name": "A", "nt_resnum": 2741, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2741", "linked_nts": [ "///A/2740", "///A/2742" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,bulge,phosphate,splayed-apart", "alpha": 66.108, "beta": 141.874, "gamma": 49.366, "delta": 145.715, "epsilon": -107.834, "zeta": -57.803, "epsilon_zeta": -50.031, "bb_type": "--", "chi": -119.349, "glyco_bond": "anti", "C5prime_xyz": [ -1.994, 8.491, -1.296 ], "P_xyz": [ 0.595, 8.773, -0.987 ], "form": ".", "ssZp": 1.075, "Dp": 1.135, "splay_angle": 79.717, "splay_distance": 13.782, "splay_ratio": 0.642, "d22": 9.254, "d64": 11.747, "eta": -52.481, "theta": -38.570, "eta_prime": 35.285, "theta_prime": -95.929, "eta_base": 113.422, "theta_base": -115.521, "v0": -22.351, "v1": 35.799, "v2": -34.845, "v3": 22.858, "v4": -0.512, "amplitude": 36.631, "phase_angle": 162.031, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5p", "suiteness": 0.566, "filter_rmsd": 0.102, "frame": { "rmsd": 0.006, "origin": [ 202.255, 158.182, 228.647 ], "x_axis": [ 0.867, 0.262, 0.425 ], "y_axis": [ -0.498, 0.388, 0.776 ], "z_axis": [ 0.039, -0.884, 0.466 ], "quaternion": [ 0.825, 0.503, -0.117, 0.230 ] } }, { "index": 2495, "index_chain": 2495, "chain_name": "A", "nt_resnum": 2742, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2742", "linked_nts": [ "///A/2741", "///A/2743" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,bulge,splayed-apart", "alpha": -83.621, "beta": -173.845, "gamma": -68.320, "delta": 148.003, "epsilon": -134.076, "zeta": -37.790, "epsilon_zeta": -96.285, "bb_type": "--", "chi": -123.633, "glyco_bond": "anti", "C5prime_xyz": [ -1.814, 8.616, -1.018 ], "P_xyz": [ -1.424, 11.200, -1.213 ], "form": ".", "ssZp": 1.644, "Dp": 1.631, "splay_angle": 89.295, "splay_distance": 13.372, "splay_ratio": 0.703, "d22": null, "d64": null, "eta": 44.292, "theta": -53.627, "eta_prime": 87.984, "theta_prime": -99.264, "eta_base": 104.004, "theta_base": -141.593, "v0": -21.713, "v1": 36.094, "v2": -35.842, "v3": 24.247, "v4": -1.761, "amplitude": 37.302, "phase_angle": 163.919, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "2o", "suiteness": 0.853, "filter_rmsd": 0.060, "frame": { "rmsd": 0.008, "origin": [ 195.779, 148.071, 235.413 ], "x_axis": [ 0.289, -0.271, -0.918 ], "y_axis": [ -0.095, 0.946, -0.309 ], "z_axis": [ 0.953, 0.177, 0.247 ], "quaternion": [ 0.788, -0.154, 0.594, -0.056 ] } }, { "index": 2496, "index_chain": 2496, "chain_name": "A", "nt_resnum": 2743, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2743", "linked_nts": [ "///A/2742", "///A/2744" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart", "alpha": 111.914, "beta": 150.821, "gamma": 48.555, "delta": 80.863, "epsilon": -155.186, "zeta": -63.315, "epsilon_zeta": -91.871, "bb_type": "BI", "chi": -177.672, "glyco_bond": "anti", "C5prime_xyz": [ -1.592, 8.561, 1.514 ], "P_xyz": [ 0.980, 8.849, 1.939 ], "form": "A", "ssZp": 4.556, "Dp": 4.558, "splay_angle": 24.056, "splay_distance": 3.730, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": -48.888, "theta": -137.978, "eta_prime": 17.530, "theta_prime": -138.390, "eta_base": 67.382, "theta_base": -103.218, "v0": 0.052, "v1": -22.271, "v2": 34.684, "v3": -35.597, "v4": 22.464, "amplitude": 36.576, "phase_angle": 18.511, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 202.433, 156.175, 243.711 ], "x_axis": [ -0.619, -0.493, 0.611 ], "y_axis": [ -0.785, 0.364, -0.502 ], "z_axis": [ 0.025, -0.790, -0.612 ], "quaternion": [ -0.182, -0.397, 0.806, -0.401 ] } }, { "index": 2497, "index_chain": 2497, "chain_name": "A", "nt_resnum": 2744, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2744", "linked_nts": [ "///A/2743", "///A/2745" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate", "alpha": -77.628, "beta": -176.904, "gamma": 59.339, "delta": 84.566, "epsilon": -154.756, "zeta": -63.348, "epsilon_zeta": -91.408, "bb_type": "BI", "chi": -166.311, "glyco_bond": "anti", "C5prime_xyz": [ -1.302, 8.665, 0.905 ], "P_xyz": [ 1.239, 8.938, 1.464 ], "form": "A", "ssZp": 4.431, "Dp": 4.512, "splay_angle": 21.503, "splay_distance": 3.494, "splay_ratio": 0.190, "d22": 4.170, "d64": 4.277, "eta": 167.986, "theta": -138.040, "eta_prime": -174.993, "theta_prime": -139.028, "eta_base": -120.958, "theta_base": -113.264, "v0": 1.495, "v1": -22.464, "v2": 33.662, "v3": -33.732, "v4": 20.323, "amplitude": 35.053, "phase_angle": 16.198, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.782, "filter_rmsd": 0.060, "frame": { "rmsd": 0.009, "origin": [ 202.666, 152.481, 243.255 ], "x_axis": [ -0.988, -0.117, 0.103 ], "y_axis": [ -0.154, 0.612, -0.775 ], "z_axis": [ 0.028, -0.782, -0.623 ], "quaternion": [ -0.021, -0.075, 0.898, -0.434 ] } }, { "index": 2498, "index_chain": 2498, "chain_name": "A", "nt_resnum": 2745, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2745", "linked_nts": [ "///A/2744", "///A/2746" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet", "alpha": -75.948, "beta": 175.982, "gamma": 60.069, "delta": 79.673, "epsilon": -156.312, "zeta": -72.857, "epsilon_zeta": -83.455, "bb_type": "BI", "chi": -163.765, "glyco_bond": "anti", "C5prime_xyz": [ -1.602, 8.760, 0.706 ], "P_xyz": [ 0.917, 9.444, 0.919 ], "form": "A", "ssZp": 4.446, "Dp": 4.534, "splay_angle": 23.001, "splay_distance": 3.735, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 163.601, "theta": -153.370, "eta_prime": -179.167, "theta_prime": -152.802, "eta_base": -134.601, "theta_base": -136.933, "v0": -1.103, "v1": -21.982, "v2": 35.414, "v3": -36.989, "v4": 24.007, "amplitude": 37.736, "phase_angle": 20.207, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.814, "filter_rmsd": 0.099, "frame": { "rmsd": 0.009, "origin": [ 202.067, 149.094, 242.639 ], "x_axis": [ -0.911, 0.264, -0.316 ], "y_axis": [ 0.411, 0.532, -0.740 ], "z_axis": [ -0.027, -0.804, -0.594 ], "quaternion": [ 0.083, 0.194, 0.871, -0.443 ] } }, { "index": 2499, "index_chain": 2499, "chain_name": "A", "nt_resnum": 2746, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2746", "linked_nts": [ "///A/2745", "///A/2747" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -67.360, "beta": -171.240, "gamma": 45.240, "delta": 82.624, "epsilon": -164.440, "zeta": -70.737, "epsilon_zeta": -93.703, "bb_type": "BI", "chi": -154.926, "glyco_bond": "anti", "C5prime_xyz": [ -1.219, 8.839, 0.235 ], "P_xyz": [ 1.228, 9.429, 0.967 ], "form": "A", "ssZp": 4.196, "Dp": 4.412, "splay_angle": 22.741, "splay_distance": 4.012, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": 168.696, "theta": -127.585, "eta_prime": 176.348, "theta_prime": -136.140, "eta_base": -158.351, "theta_base": -115.602, "v0": -0.463, "v1": -21.031, "v2": 33.321, "v3": -34.496, "v4": 22.085, "amplitude": 35.316, "phase_angle": 19.350, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.797, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 201.088, 145.511, 242.243 ], "x_axis": [ -0.549, 0.703, -0.453 ], "y_axis": [ 0.797, 0.275, -0.538 ], "z_axis": [ -0.254, -0.656, -0.711 ], "quaternion": [ 0.063, 0.471, 0.796, -0.375 ] } }, { "index": 2500, "index_chain": 2500, "chain_name": "A", "nt_resnum": 2747, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2747", "linked_nts": [ "///A/2746", "///A/2748" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 151.025, "beta": -166.432, "gamma": 178.604, "delta": 82.052, "epsilon": -135.623, "zeta": -67.838, "epsilon_zeta": -67.785, "bb_type": "BI", "chi": -172.745, "glyco_bond": "anti", "C5prime_xyz": [ -1.104, 8.547, 1.280 ], "P_xyz": [ 0.428, 10.321, 0.107 ], "form": ".", "ssZp": 4.649, "Dp": 4.711, "splay_angle": 29.376, "splay_distance": 4.553, "splay_ratio": 0.255, "d22": null, "d64": null, "eta": 161.623, "theta": -158.525, "eta_prime": 176.708, "theta_prime": -151.227, "eta_base": -144.250, "theta_base": -109.574, "v0": 4.047, "v1": -25.852, "v2": 36.622, "v3": -35.259, "v4": 19.704, "amplitude": 37.517, "phase_angle": 12.537, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.976, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 198.099, 143.677, 240.294 ], "x_axis": [ -0.097, 0.805, -0.585 ], "y_axis": [ 0.937, -0.124, -0.326 ], "z_axis": [ -0.335, -0.580, -0.743 ], "quaternion": [ 0.095, 0.665, 0.655, -0.346 ] } }, { "index": 2501, "index_chain": 2501, "chain_name": "A", "nt_resnum": 2748, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2748", "linked_nts": [ "///A/2747", "///A/2749" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -76.218, "beta": 170.307, "gamma": 72.196, "delta": 82.914, "epsilon": -176.017, "zeta": -92.586, "epsilon_zeta": -83.431, "bb_type": "BI", "chi": -163.278, "glyco_bond": "anti", "C5prime_xyz": [ -1.276, 8.708, 0.724 ], "P_xyz": [ 1.304, 9.045, 0.443 ], "form": ".", "ssZp": 4.351, "Dp": 4.386, "splay_angle": 56.627, "splay_distance": 8.770, "splay_ratio": 0.476, "d22": null, "d64": null, "eta": 165.035, "theta": 175.068, "eta_prime": -168.252, "theta_prime": 172.956, "eta_base": -109.896, "theta_base": 174.467, "v0": 2.399, "v1": -23.943, "v2": 35.105, "v3": -34.697, "v4": 20.415, "amplitude": 36.328, "phase_angle": 14.911, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.413, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 196.103, 143.555, 236.204 ], "x_axis": [ 0.595, 0.485, -0.642 ], "y_axis": [ 0.715, -0.684, 0.146 ], "z_axis": [ -0.368, -0.546, -0.753 ], "quaternion": [ 0.199, 0.871, 0.345, -0.290 ] } }, { "index": 2502, "index_chain": 2502, "chain_name": "A", "nt_resnum": 2749, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2749", "linked_nts": [ "///A/2748", "///A/2750" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": -62.997, "beta": -161.677, "gamma": 50.079, "delta": 78.996, "epsilon": -152.480, "zeta": -57.816, "epsilon_zeta": -94.664, "bb_type": "BI", "chi": -171.273, "glyco_bond": "anti", "C5prime_xyz": [ -1.661, 8.684, 1.140 ], "P_xyz": [ 0.556, 9.356, 2.347 ], "form": ".", "ssZp": 4.577, "Dp": 4.581, "splay_angle": 32.807, "splay_distance": 4.928, "splay_ratio": 0.283, "d22": null, "d64": null, "eta": -171.584, "theta": -139.086, "eta_prime": 177.050, "theta_prime": -132.491, "eta_base": 168.689, "theta_base": -81.332, "v0": -1.322, "v1": -22.148, "v2": 35.765, "v3": -37.507, "v4": 24.482, "amplitude": 38.184, "phase_angle": 20.504, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "&a", "suiteness": 0.855, "filter_rmsd": 0.097, "frame": { "rmsd": 0.010, "origin": [ 188.566, 139.103, 236.728 ], "x_axis": [ 0.416, 0.784, -0.461 ], "y_axis": [ 0.909, -0.374, 0.185 ], "z_axis": [ -0.028, -0.496, -0.868 ], "quaternion": [ 0.209, 0.815, 0.519, -0.150 ] } }, { "index": 2503, "index_chain": 2503, "chain_name": "A", "nt_resnum": 2750, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2750", "linked_nts": [ "///A/2749", "///A/2751" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -81.521, "beta": -179.101, "gamma": 62.327, "delta": 84.694, "epsilon": -134.753, "zeta": -69.539, "epsilon_zeta": -65.214, "bb_type": "BI", "chi": -178.977, "glyco_bond": "anti", "C5prime_xyz": [ -1.348, 8.322, 1.637 ], "P_xyz": [ 1.181, 8.420, 2.320 ], "form": ".", "ssZp": 4.668, "Dp": 4.685, "splay_angle": 26.155, "splay_distance": 4.022, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 167.926, "theta": -127.865, "eta_prime": -172.623, "theta_prime": -123.649, "eta_base": -106.205, "theta_base": -76.537, "v0": 3.980, "v1": -24.486, "v2": 34.506, "v3": -33.168, "v4": 18.439, "amplitude": 35.315, "phase_angle": 12.293, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.635, "filter_rmsd": 0.039, "frame": { "rmsd": 0.013, "origin": [ 189.892, 139.232, 231.984 ], "x_axis": [ 0.966, 0.253, 0.050 ], "y_axis": [ 0.167, -0.761, 0.627 ], "z_axis": [ 0.197, -0.598, -0.777 ], "quaternion": [ 0.327, 0.936, 0.112, 0.066 ] } }, { "index": 2504, "index_chain": 2504, "chain_name": "A", "nt_resnum": 2751, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2751", "linked_nts": [ "///A/2750", "///A/2752" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -65.842, "beta": 160.710, "gamma": 64.764, "delta": 86.561, "epsilon": -149.450, "zeta": -59.790, "epsilon_zeta": -89.661, "bb_type": "BI", "chi": -168.265, "glyco_bond": "anti", "C5prime_xyz": [ -1.502, 8.682, 1.049 ], "P_xyz": [ 1.101, 8.912, 1.234 ], "form": ".", "ssZp": 4.311, "Dp": 4.422, "splay_angle": 18.703, "splay_distance": 3.054, "splay_ratio": 0.164, "d22": null, "d64": null, "eta": 165.697, "theta": -126.247, "eta_prime": -167.644, "theta_prime": -129.848, "eta_base": -98.151, "theta_base": -89.569, "v0": -0.059, "v1": -20.037, "v2": 31.268, "v3": -32.205, "v4": 20.402, "amplitude": 33.017, "phase_angle": 18.729, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.670, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 192.937, 138.207, 229.564 ], "x_axis": [ 0.751, -0.425, 0.505 ], "y_axis": [ -0.625, -0.705, 0.336 ], "z_axis": [ 0.213, -0.568, -0.795 ], "quaternion": [ 0.251, 0.902, -0.291, 0.199 ] } }, { "index": 2505, "index_chain": 2505, "chain_name": "A", "nt_resnum": 2752, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2752", "linked_nts": [ "///A/2751", "///A/2753" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -77.828, "beta": -178.571, "gamma": 54.113, "delta": 84.567, "epsilon": -169.248, "zeta": -77.610, "epsilon_zeta": -91.638, "bb_type": "BI", "chi": -141.150, "glyco_bond": "anti", "C5prime_xyz": [ -1.549, 8.802, -0.585 ], "P_xyz": [ 0.985, 9.454, -0.566 ], "form": ".", "ssZp": 3.717, "Dp": 4.263, "splay_angle": 27.159, "splay_distance": 4.609, "splay_ratio": 0.236, "d22": 4.260, "d64": 4.711, "eta": 159.935, "theta": -125.867, "eta_prime": -177.763, "theta_prime": -131.389, "eta_base": -117.163, "theta_base": -100.322, "v0": -2.396, "v1": -18.337, "v2": 30.790, "v3": -33.045, "v4": 22.405, "amplitude": 33.359, "phase_angle": 22.633, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.759, "filter_rmsd": 0.058, "frame": { "rmsd": 0.011, "origin": [ 195.047, 136.413, 228.278 ], "x_axis": [ 0.116, -0.790, 0.602 ], "y_axis": [ -0.885, -0.357, -0.298 ], "z_axis": [ 0.450, -0.499, -0.741 ], "quaternion": [ 0.067, 0.744, -0.563, 0.354 ] } }, { "index": 2506, "index_chain": 2506, "chain_name": "A", "nt_resnum": 2753, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2753", "linked_nts": [ "///A/2752", "///A/2754" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 148.483, "beta": -141.881, "gamma": 178.744, "delta": 82.720, "epsilon": -113.642, "zeta": -104.216, "epsilon_zeta": -9.425, "bb_type": "--", "chi": -164.969, "glyco_bond": "anti", "C5prime_xyz": [ -1.462, 8.721, 0.803 ], "P_xyz": [ 0.074, 9.960, -0.911 ], "form": ".", "ssZp": 4.268, "Dp": 4.607, "splay_angle": 26.919, "splay_distance": 4.355, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 177.211, "theta": -172.161, "eta_prime": -164.941, "theta_prime": -158.724, "eta_base": -117.751, "theta_base": -155.941, "v0": -0.874, "v1": -20.978, "v2": 33.541, "v3": -34.984, "v4": 22.686, "amplitude": 35.693, "phase_angle": 19.997, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.705, "filter_rmsd": 0.105, "frame": { "rmsd": 0.009, "origin": [ 197.093, 132.487, 226.993 ], "x_axis": [ -0.402, -0.864, 0.303 ], "y_axis": [ -0.752, 0.123, -0.648 ], "z_axis": [ 0.522, -0.488, -0.699 ], "quaternion": [ 0.074, -0.542, 0.746, -0.381 ] } }, { "index": 2507, "index_chain": 2507, "chain_name": "A", "nt_resnum": 2754, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2754", "linked_nts": [ "///A/2753", "///A/2755" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop", "alpha": -61.454, "beta": 166.438, "gamma": 60.222, "delta": 144.202, "epsilon": -146.008, "zeta": -159.712, "epsilon_zeta": 13.704, "bb_type": "--", "chi": -121.638, "glyco_bond": "anti", "C5prime_xyz": [ -1.925, 8.566, -1.169 ], "P_xyz": [ 0.598, 9.191, -0.908 ], "form": ".", "ssZp": 1.934, "Dp": 1.909, "splay_angle": 50.518, "splay_distance": 7.872, "splay_ratio": 0.431, "d22": null, "d64": null, "eta": 172.041, "theta": -136.279, "eta_prime": -161.585, "theta_prime": 168.747, "eta_base": -159.079, "theta_base": 100.448, "v0": -23.142, "v1": 35.963, "v2": -34.310, "v3": 21.822, "v4": 0.614, "amplitude": 36.453, "phase_angle": 160.257, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.191, "filter_rmsd": 0.044, "frame": { "rmsd": 0.010, "origin": [ 200.296, 130.781, 224.586 ], "x_axis": [ -0.823, -0.358, 0.441 ], "y_axis": [ -0.546, 0.286, -0.787 ], "z_axis": [ 0.156, -0.889, -0.431 ], "quaternion": [ -0.089, -0.284, 0.797, -0.526 ] } }, { "index": 2508, "index_chain": 2508, "chain_name": "A", "nt_resnum": 2755, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2755", "linked_nts": [ "///A/2754", "///A/2756" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate", "alpha": 125.430, "beta": -133.501, "gamma": 92.410, "delta": 149.806, "epsilon": -126.314, "zeta": -79.706, "epsilon_zeta": -46.609, "bb_type": "--", "chi": -146.915, "glyco_bond": "anti", "C5prime_xyz": [ -1.770, 8.627, 0.286 ], "P_xyz": [ 0.401, 8.310, 1.734 ], "form": ".", "ssZp": 1.472, "Dp": 1.516, "splay_angle": 83.350, "splay_distance": 12.727, "splay_ratio": 0.665, "d22": null, "d64": null, "eta": 72.582, "theta": -61.099, "eta_prime": 95.758, "theta_prime": -92.086, "eta_base": 54.762, "theta_base": -67.526, "v0": -20.035, "v1": 35.187, "v2": -36.003, "v3": 25.354, "v4": -3.559, "amplitude": 37.003, "phase_angle": 166.644, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.100, "frame": { "rmsd": 0.009, "origin": [ 203.212, 137.667, 222.125 ], "x_axis": [ -0.575, 0.743, -0.344 ], "y_axis": [ -0.067, -0.462, -0.884 ], "z_axis": [ -0.816, -0.485, 0.315 ], "quaternion": [ 0.264, -0.378, -0.447, 0.767 ] } }, { "index": 2509, "index_chain": 2509, "chain_name": "A", "nt_resnum": 2756, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2756", "linked_nts": [ "///A/2755", "///A/2757" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop", "alpha": -94.900, "beta": -164.915, "gamma": 53.884, "delta": 81.218, "epsilon": -144.865, "zeta": -76.586, "epsilon_zeta": -68.279, "bb_type": "BI", "chi": 177.664, "glyco_bond": "anti", "C5prime_xyz": [ -1.684, 8.517, 1.747 ], "P_xyz": [ 0.419, 8.813, 3.277 ], "form": "A", "ssZp": 4.475, "Dp": 4.531, "splay_angle": 23.746, "splay_distance": 3.737, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 151.416, "theta": -148.512, "eta_prime": -176.783, "theta_prime": -142.307, "eta_base": -133.548, "theta_base": -115.278, "v0": -2.117, "v1": -20.184, "v2": 33.480, "v3": -35.653, "v4": 23.846, "amplitude": 36.085, "phase_angle": 21.905, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.371, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 196.016, 127.354, 220.159 ], "x_axis": [ -0.222, 0.636, -0.739 ], "y_axis": [ 0.915, 0.397, 0.067 ], "z_axis": [ 0.336, -0.662, -0.670 ], "quaternion": [ 0.355, 0.513, 0.756, -0.197 ] } }, { "index": 2510, "index_chain": 2510, "chain_name": "A", "nt_resnum": 2757, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2757", "linked_nts": [ "///A/2756", "///A/2758" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -72.718, "beta": 179.512, "gamma": 56.408, "delta": 84.713, "epsilon": -159.142, "zeta": -68.583, "epsilon_zeta": -90.558, "bb_type": "BI", "chi": -165.827, "glyco_bond": "anti", "C5prime_xyz": [ -1.513, 8.678, 0.879 ], "P_xyz": [ 0.982, 9.083, 1.552 ], "form": "A", "ssZp": 4.322, "Dp": 4.416, "splay_angle": 18.561, "splay_distance": 3.042, "splay_ratio": 0.165, "d22": null, "d64": null, "eta": 166.861, "theta": -145.831, "eta_prime": -179.569, "theta_prime": -147.803, "eta_base": -142.927, "theta_base": -128.646, "v0": -0.003, "v1": -20.979, "v2": 32.735, "v3": -33.645, "v4": 21.239, "amplitude": 34.539, "phase_angle": 18.601, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.905, "filter_rmsd": 0.101, "frame": { "rmsd": 0.009, "origin": [ 195.263, 124.517, 217.846 ], "x_axis": [ 0.306, 0.790, -0.531 ], "y_axis": [ 0.875, -0.014, 0.483 ], "z_axis": [ 0.374, -0.612, -0.696 ], "quaternion": [ 0.386, 0.710, 0.587, -0.055 ] } }, { "index": 2511, "index_chain": 2511, "chain_name": "A", "nt_resnum": 2758, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2758", "linked_nts": [ "///A/2757", "///A/2759" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -71.860, "beta": 179.573, "gamma": 50.475, "delta": 81.627, "epsilon": -154.073, "zeta": -70.134, "epsilon_zeta": -83.939, "bb_type": "BI", "chi": -159.405, "glyco_bond": "anti", "C5prime_xyz": [ -1.410, 8.849, 0.468 ], "P_xyz": [ 1.087, 9.429, 1.025 ], "form": "A", "ssZp": 4.294, "Dp": 4.489, "splay_angle": 19.411, "splay_distance": 3.147, "splay_ratio": 0.170, "d22": null, "d64": null, "eta": 164.015, "theta": -147.355, "eta_prime": 175.485, "theta_prime": -145.563, "eta_base": -150.700, "theta_base": -116.397, "v0": -1.501, "v1": -20.528, "v2": 33.463, "v3": -35.238, "v4": 23.172, "amplitude": 35.827, "phase_angle": 20.927, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.875, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 194.683, 123.052, 215.244 ], "x_axis": [ 0.686, 0.714, -0.137 ], "y_axis": [ 0.623, -0.479, 0.618 ], "z_axis": [ 0.376, -0.510, -0.774 ], "quaternion": [ 0.329, 0.857, 0.390, 0.070 ] } }, { "index": 2512, "index_chain": 2512, "chain_name": "A", "nt_resnum": 2759, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2759", "linked_nts": [ "///A/2758", "///A/2760" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -67.965, "beta": 171.648, "gamma": 56.477, "delta": 82.597, "epsilon": -156.387, "zeta": -77.652, "epsilon_zeta": -78.735, "bb_type": "BI", "chi": -154.660, "glyco_bond": "anti", "C5prime_xyz": [ -1.511, 8.841, 0.185 ], "P_xyz": [ 1.045, 9.388, 0.213 ], "form": ".", "ssZp": 4.203, "Dp": 4.472, "splay_angle": 29.210, "splay_distance": 4.640, "splay_ratio": 0.252, "d22": null, "d64": null, "eta": 166.563, "theta": -153.248, "eta_prime": -177.919, "theta_prime": -151.120, "eta_base": -135.717, "theta_base": -125.939, "v0": -1.820, "v1": -20.063, "v2": 32.962, "v3": -34.967, "v4": 23.231, "amplitude": 35.426, "phase_angle": 21.498, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.959, "filter_rmsd": 0.058, "frame": { "rmsd": 0.009, "origin": [ 195.648, 122.682, 212.272 ], "x_axis": [ 0.884, 0.384, 0.268 ], "y_axis": [ 0.221, -0.846, 0.485 ], "z_axis": [ 0.413, -0.369, -0.833 ], "quaternion": [ 0.226, 0.944, 0.160, 0.180 ] } }, { "index": 2513, "index_chain": 2513, "chain_name": "A", "nt_resnum": 2760, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2760", "linked_nts": [ "///A/2759", "///A/2761" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -61.182, "beta": 173.188, "gamma": 60.939, "delta": 84.885, "epsilon": -115.233, "zeta": -117.704, "epsilon_zeta": 2.470, "bb_type": "--", "chi": -148.403, "glyco_bond": "anti", "C5prime_xyz": [ -1.258, 8.792, -0.130 ], "P_xyz": [ 1.336, 9.081, -0.322 ], "form": ".", "ssZp": 3.649, "Dp": 4.604, "splay_angle": 22.758, "splay_distance": 3.791, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": -170.436, "theta": -158.388, "eta_prime": -162.443, "theta_prime": -154.256, "eta_base": -134.113, "theta_base": -137.013, "v0": 0.620, "v1": -21.435, "v2": 32.892, "v3": -33.456, "v4": 20.720, "amplitude": 34.508, "phase_angle": 17.605, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.845, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 197.840, 121.921, 208.254 ], "x_axis": [ 0.875, -0.126, 0.468 ], "y_axis": [ -0.279, -0.920, 0.274 ], "z_axis": [ 0.396, -0.370, -0.840 ], "quaternion": [ 0.169, 0.953, -0.106, 0.227 ] } }, { "index": 2514, "index_chain": 2514, "chain_name": "A", "nt_resnum": 2761, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2761", "linked_nts": [ "///A/2760", "///A/2762" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart", "alpha": -51.340, "beta": 123.655, "gamma": 63.738, "delta": 79.323, "epsilon": -130.672, "zeta": 73.547, "epsilon_zeta": 155.780, "bb_type": "--", "chi": -146.790, "glyco_bond": "anti", "C5prime_xyz": [ -1.486, 8.850, -0.300 ], "P_xyz": [ 0.735, 8.555, -1.628 ], "form": ".", "ssZp": 3.796, "Dp": 4.695, "splay_angle": 129.910, "splay_distance": 17.168, "splay_ratio": 0.906, "d22": null, "d64": null, "eta": 165.769, "theta": 13.858, "eta_prime": 178.266, "theta_prime": 9.238, "eta_base": -157.377, "theta_base": 15.006, "v0": -0.449, "v1": -22.930, "v2": 36.289, "v3": -37.563, "v4": 23.975, "amplitude": 38.444, "phase_angle": 19.275, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.521, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 199.008, 120.316, 205.024 ], "x_axis": [ 0.736, -0.405, 0.543 ], "y_axis": [ -0.462, -0.886, -0.035 ], "z_axis": [ 0.495, -0.225, -0.839 ], "quaternion": [ 0.051, 0.930, -0.233, 0.279 ] } }, { "index": 2515, "index_chain": 2515, "chain_name": "A", "nt_resnum": 2762, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2762", "linked_nts": [ "///A/2761", "///A/2763" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,splayed-apart", "alpha": -103.271, "beta": -174.640, "gamma": 51.072, "delta": 79.508, "epsilon": -148.810, "zeta": -70.261, "epsilon_zeta": -78.549, "bb_type": "BI", "chi": -168.872, "glyco_bond": "anti", "C5prime_xyz": [ -1.591, 8.642, 1.018 ], "P_xyz": [ 0.843, 9.234, 1.778 ], "form": "A", "ssZp": 4.588, "Dp": 4.638, "splay_angle": 24.816, "splay_distance": 3.830, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 163.080, "theta": -145.171, "eta_prime": -158.052, "theta_prime": -140.409, "eta_base": -122.433, "theta_base": -96.730, "v0": 0.931, "v1": -23.995, "v2": 36.641, "v3": -37.100, "v4": 22.800, "amplitude": 38.363, "phase_angle": 17.230, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 189.428, 106.160, 203.417 ], "x_axis": [ -0.690, 0.544, -0.476 ], "y_axis": [ 0.661, 0.742, -0.111 ], "z_axis": [ 0.293, -0.392, -0.872 ], "quaternion": [ 0.212, 0.332, 0.909, -0.138 ] } }, { "index": 2516, "index_chain": 2516, "chain_name": "A", "nt_resnum": 2763, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2763", "linked_nts": [ "///A/2762", "///A/2764" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -62.228, "beta": 168.227, "gamma": 57.237, "delta": 81.567, "epsilon": -157.789, "zeta": -16.452, "epsilon_zeta": -141.337, "bb_type": "--", "chi": -166.752, "glyco_bond": "anti", "C5prime_xyz": [ -1.297, 8.665, 0.934 ], "P_xyz": [ 1.307, 8.916, 1.123 ], "form": ".", "ssZp": 4.504, "Dp": 4.570, "splay_angle": 25.450, "splay_distance": 4.754, "splay_ratio": 0.244, "d22": null, "d64": null, "eta": 167.684, "theta": -103.971, "eta_prime": -173.200, "theta_prime": -113.833, "eta_base": -112.862, "theta_base": -89.895, "v0": 3.110, "v1": -24.852, "v2": 35.979, "v3": -35.153, "v4": 20.219, "amplitude": 37.064, "phase_angle": 13.903, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.958, "filter_rmsd": 0.062, "frame": { "rmsd": 0.004, "origin": [ 188.458, 105.476, 199.776 ], "x_axis": [ -0.048, 0.911, -0.409 ], "y_axis": [ 0.965, 0.147, 0.216 ], "z_axis": [ 0.257, -0.384, -0.887 ], "quaternion": [ 0.231, 0.650, 0.721, -0.058 ] } }, { "index": 2517, "index_chain": 2517, "chain_name": "A", "nt_resnum": 2764, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2764", "linked_nts": [ "///A/2763", "///A/2765" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -148.443, "beta": 133.929, "gamma": 159.104, "delta": 83.245, "epsilon": -134.857, "zeta": -102.020, "epsilon_zeta": -32.837, "bb_type": "--", "chi": -176.036, "glyco_bond": "anti", "C5prime_xyz": [ -1.551, 8.579, 1.463 ], "P_xyz": [ -0.689, 10.767, 0.309 ], "form": "A", "ssZp": 4.462, "Dp": 4.544, "splay_angle": 21.786, "splay_distance": 3.669, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": -176.335, "theta": -166.275, "eta_prime": -157.355, "theta_prime": -165.943, "eta_base": -106.318, "theta_base": -134.831, "v0": -0.621, "v1": -20.122, "v2": 32.014, "v3": -33.320, "v4": 21.433, "amplitude": 34.002, "phase_angle": 19.686, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 187.429, 107.199, 195.466 ], "x_axis": [ 0.521, 0.778, -0.351 ], "y_axis": [ 0.850, -0.439, 0.290 ], "z_axis": [ 0.071, -0.450, -0.890 ], "quaternion": [ 0.219, 0.844, 0.482, -0.083 ] } }, { "index": 2518, "index_chain": 2518, "chain_name": "A", "nt_resnum": 2765, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2765", "linked_nts": [ "///A/2764", "///A/2766" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 133.492, "beta": -138.890, "gamma": 179.863, "delta": 82.634, "epsilon": -122.668, "zeta": -82.504, "epsilon_zeta": -40.164, "bb_type": "--", "chi": 173.257, "glyco_bond": "anti", "C5prime_xyz": [ -1.551, 8.214, 2.032 ], "P_xyz": [ 0.278, 9.814, 1.067 ], "form": "A", "ssZp": 4.702, "Dp": 4.722, "splay_angle": 20.947, "splay_distance": 3.431, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": 154.658, "theta": -154.538, "eta_prime": 172.148, "theta_prime": -152.520, "eta_base": -142.709, "theta_base": -128.461, "v0": 3.212, "v1": -24.370, "v2": 35.128, "v3": -34.281, "v4": 19.616, "amplitude": 36.154, "phase_angle": 13.680, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.131, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 186.641, 107.277, 191.883 ], "x_axis": [ 0.880, 0.472, -0.058 ], "y_axis": [ 0.453, -0.796, 0.401 ], "z_axis": [ 0.143, -0.379, -0.914 ], "quaternion": [ 0.206, 0.947, 0.244, 0.023 ] } }, { "index": 2519, "index_chain": 2519, "chain_name": "A", "nt_resnum": 2766, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2766", "linked_nts": [ "///A/2765", "///A/2767" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -55.887, "beta": 179.006, "gamma": 34.826, "delta": 81.850, "epsilon": -152.192, "zeta": -85.723, "epsilon_zeta": -66.469, "bb_type": "BI", "chi": -150.459, "glyco_bond": "anti", "C5prime_xyz": [ -1.385, 8.777, -0.034 ], "P_xyz": [ 1.077, 9.477, 0.482 ], "form": "A", "ssZp": 4.118, "Dp": 4.579, "splay_angle": 19.715, "splay_distance": 3.102, "splay_ratio": 0.173, "d22": null, "d64": null, "eta": 159.617, "theta": -161.233, "eta_prime": 172.471, "theta_prime": -156.960, "eta_base": -151.711, "theta_base": -129.275, "v0": 1.435, "v1": -23.317, "v2": 35.084, "v3": -35.261, "v4": 21.335, "amplitude": 36.578, "phase_angle": 16.431, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.312, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 186.921, 108.261, 188.608 ], "x_axis": [ 0.936, -0.064, 0.347 ], "y_axis": [ -0.134, -0.974, 0.181 ], "z_axis": [ 0.327, -0.216, -0.920 ], "quaternion": [ 0.102, 0.978, -0.051, 0.172 ] } }, { "index": 2520, "index_chain": 2520, "chain_name": "A", "nt_resnum": 2767, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2767", "linked_nts": [ "///A/2766", "///A/2768" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -56.696, "beta": 158.884, "gamma": 54.018, "delta": 83.622, "epsilon": -160.620, "zeta": -65.632, "epsilon_zeta": -94.989, "bb_type": "BI", "chi": -151.237, "glyco_bond": "anti", "C5prime_xyz": [ -1.192, 8.629, 0.005 ], "P_xyz": [ 1.389, 8.656, -0.434 ], "form": ".", "ssZp": 4.194, "Dp": 4.565, "splay_angle": 27.930, "splay_distance": 5.153, "splay_ratio": 0.259, "d22": null, "d64": null, "eta": 165.737, "theta": -112.371, "eta_prime": 179.553, "theta_prime": -127.905, "eta_base": -142.724, "theta_base": -126.174, "v0": 5.352, "v1": -26.286, "v2": 36.102, "v3": -33.993, "v4": 18.103, "amplitude": 36.709, "phase_angle": 10.433, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.761, "filter_rmsd": 0.036, "frame": { "rmsd": 0.011, "origin": [ 188.204, 108.019, 185.794 ], "x_axis": [ 0.751, -0.509, 0.420 ], "y_axis": [ -0.489, -0.857, -0.164 ], "z_axis": [ 0.444, -0.082, -0.892 ], "quaternion": [ -0.022, 0.935, -0.267, 0.231 ] } }, { "index": 2521, "index_chain": 2521, "chain_name": "A", "nt_resnum": 2768, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2768", "linked_nts": [ "///A/2767", "///A/2769" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 141.996, "beta": -167.728, "gamma": -159.171, "delta": 79.571, "epsilon": -151.430, "zeta": -73.648, "epsilon_zeta": -77.782, "bb_type": "BI", "chi": -169.071, "glyco_bond": "anti", "C5prime_xyz": [ -1.478, 8.618, 1.044 ], "P_xyz": [ -0.751, 10.880, -0.062 ], "form": ".", "ssZp": 4.613, "Dp": 4.649, "splay_angle": 31.367, "splay_distance": 4.840, "splay_ratio": 0.273, "d22": null, "d64": null, "eta": 175.613, "theta": 171.378, "eta_prime": -170.969, "theta_prime": -178.296, "eta_base": -145.255, "theta_base": -148.664, "v0": 2.576, "v1": -25.658, "v2": 37.721, "v3": -37.261, "v4": 21.858, "amplitude": 39.033, "phase_angle": 14.898, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.294, "filter_rmsd": 0.102, "frame": { "rmsd": 0.005, "origin": [ 192.542, 109.044, 183.208 ], "x_axis": [ 0.544, -0.753, 0.370 ], "y_axis": [ -0.699, -0.650, -0.297 ], "z_axis": [ 0.464, -0.097, -0.880 ], "quaternion": [ -0.057, 0.877, -0.414, 0.238 ] } }, { "index": 2522, "index_chain": 2522, "chain_name": "A", "nt_resnum": 2769, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2769", "linked_nts": [ "///A/2768", "///A/2770" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,A-minor,phosphate", "alpha": -60.607, "beta": -174.642, "gamma": 44.059, "delta": 79.691, "epsilon": -128.412, "zeta": -89.378, "epsilon_zeta": -39.034, "bb_type": "--", "chi": 175.993, "glyco_bond": "anti", "C5prime_xyz": [ -1.697, 8.332, 1.867 ], "P_xyz": [ 0.471, 8.576, 3.321 ], "form": "A", "ssZp": 4.690, "Dp": 4.705, "splay_angle": 23.398, "splay_distance": 3.496, "splay_ratio": 0.203, "d22": null, "d64": null, "eta": 175.666, "theta": -146.140, "eta_prime": -178.968, "theta_prime": -137.714, "eta_base": -148.080, "theta_base": -91.039, "v0": 1.267, "v1": -23.882, "v2": 36.204, "v3": -36.457, "v4": 22.171, "amplitude": 37.803, "phase_angle": 16.724, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.800, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 196.260, 109.467, 180.139 ], "x_axis": [ -0.058, -0.821, 0.568 ], "y_axis": [ -0.979, -0.065, -0.193 ], "z_axis": [ 0.195, -0.568, -0.800 ], "quaternion": [ 0.139, 0.672, -0.669, 0.284 ] } }, { "index": 2523, "index_chain": 2523, "chain_name": "A", "nt_resnum": 2770, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2770", "linked_nts": [ "///A/2769", "///A/2771" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor", "alpha": -50.014, "beta": 158.669, "gamma": 46.466, "delta": 83.801, "epsilon": -149.976, "zeta": -69.888, "epsilon_zeta": -80.087, "bb_type": "BI", "chi": -168.801, "glyco_bond": "anti", "C5prime_xyz": [ -1.212, 8.488, 1.084 ], "P_xyz": [ 1.385, 8.471, 1.395 ], "form": ".", "ssZp": 4.565, "Dp": 4.625, "splay_angle": 36.453, "splay_distance": 5.769, "splay_ratio": 0.317, "d22": null, "d64": null, "eta": 164.324, "theta": -97.173, "eta_prime": -179.464, "theta_prime": -100.214, "eta_base": -120.634, "theta_base": -57.803, "v0": 4.919, "v1": -25.560, "v2": 35.364, "v3": -33.549, "v4": 18.071, "amplitude": 36.025, "phase_angle": 10.992, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.517, "filter_rmsd": 0.038, "frame": { "rmsd": 0.007, "origin": [ 197.599, 106.644, 178.569 ], "x_axis": [ -0.739, -0.617, 0.270 ], "y_axis": [ -0.643, 0.525, -0.558 ], "z_axis": [ 0.203, -0.585, -0.785 ], "quaternion": [ -0.019, -0.361, 0.873, -0.327 ] } }, { "index": 2524, "index_chain": 2524, "chain_name": "A", "nt_resnum": 2771, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2771", "linked_nts": [ "///A/2770", "///A/2772" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 149.347, "beta": -131.771, "gamma": 164.933, "delta": 79.296, "epsilon": -125.508, "zeta": -92.984, "epsilon_zeta": -32.524, "bb_type": "--", "chi": 172.082, "glyco_bond": "anti", "C5prime_xyz": [ -1.824, 8.273, 2.070 ], "P_xyz": [ 0.283, 9.507, 1.162 ], "form": "A", "ssZp": 4.684, "Dp": 4.713, "splay_angle": 23.045, "splay_distance": 3.524, "splay_ratio": 0.202, "d22": null, "d64": null, "eta": 155.838, "theta": -155.787, "eta_prime": -166.903, "theta_prime": -156.805, "eta_base": -87.397, "theta_base": -127.048, "v0": 1.133, "v1": -23.968, "v2": 36.465, "v3": -36.858, "v4": 22.482, "amplitude": 38.125, "phase_angle": 16.966, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.374, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 193.751, 102.758, 176.731 ], "x_axis": [ -0.936, 0.137, -0.324 ], "y_axis": [ 0.307, 0.771, -0.559 ], "z_axis": [ 0.173, -0.622, -0.763 ], "quaternion": [ 0.134, 0.119, 0.931, -0.317 ] } }, { "index": 2525, "index_chain": 2525, "chain_name": "A", "nt_resnum": 2772, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2772", "linked_nts": [ "///A/2771", "///A/2773" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -52.169, "beta": 158.346, "gamma": 47.944, "delta": 80.707, "epsilon": -107.469, "zeta": -91.176, "epsilon_zeta": -16.293, "bb_type": "--", "chi": -171.897, "glyco_bond": "anti", "C5prime_xyz": [ -1.537, 8.532, 1.225 ], "P_xyz": [ 1.045, 8.790, 1.535 ], "form": ".", "ssZp": 4.551, "Dp": 4.765, "splay_angle": 23.372, "splay_distance": 4.572, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 173.848, "theta": -109.640, "eta_prime": -177.076, "theta_prime": -123.468, "eta_base": -136.870, "theta_base": -120.729, "v0": 3.472, "v1": -25.735, "v2": 37.010, "v3": -36.070, "v4": 20.489, "amplitude": 38.062, "phase_angle": 13.503, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.458, "filter_rmsd": 0.102, "frame": { "rmsd": 0.006, "origin": [ 193.136, 99.691, 175.109 ], "x_axis": [ -0.554, 0.584, -0.593 ], "y_axis": [ 0.817, 0.517, -0.253 ], "z_axis": [ 0.159, -0.625, -0.764 ], "quaternion": [ 0.223, 0.416, 0.842, -0.261 ] } }, { "index": 2526, "index_chain": 2526, "chain_name": "A", "nt_resnum": 2773, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2773", "linked_nts": [ "///A/2772", "///A/2774" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 71.195, "beta": -125.520, "gamma": -113.732, "delta": 81.109, "epsilon": -141.510, "zeta": -84.658, "epsilon_zeta": -56.853, "bb_type": "BI", "chi": 178.094, "glyco_bond": "anti", "C5prime_xyz": [ -1.471, 8.357, 1.775 ], "P_xyz": [ -1.472, 10.945, 1.344 ], "form": "A", "ssZp": 4.707, "Dp": 4.698, "splay_angle": 26.917, "splay_distance": 4.045, "splay_ratio": 0.234, "d22": null, "d64": null, "eta": 172.915, "theta": 155.787, "eta_prime": 178.280, "theta_prime": 175.487, "eta_base": -157.799, "theta_base": -144.420, "v0": 2.968, "v1": -24.861, "v2": 36.039, "v3": -35.379, "v4": 20.468, "amplitude": 37.171, "phase_angle": 14.177, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 190.486, 96.881, 172.662 ], "x_axis": [ -0.339, 0.830, -0.444 ], "y_axis": [ 0.935, 0.351, -0.057 ], "z_axis": [ 0.109, -0.434, -0.894 ], "quaternion": [ 0.172, 0.549, 0.804, -0.153 ] } }, { "index": 2527, "index_chain": 2527, "chain_name": "A", "nt_resnum": 2774, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2774", "linked_nts": [ "///A/2773", "///A/2775" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -47.936, "beta": 172.930, "gamma": 41.394, "delta": 82.684, "epsilon": -174.271, "zeta": -77.913, "epsilon_zeta": -96.358, "bb_type": "BI", "chi": -172.073, "glyco_bond": "anti", "C5prime_xyz": [ -1.114, 8.526, 1.291 ], "P_xyz": [ 1.342, 8.484, 2.211 ], "form": "A", "ssZp": 4.385, "Dp": 4.423, "splay_angle": 24.356, "splay_distance": 3.600, "splay_ratio": 0.211, "d22": 4.438, "d64": 3.835, "eta": 170.760, "theta": -139.592, "eta_prime": -175.639, "theta_prime": -136.342, "eta_base": -133.485, "theta_base": -104.334, "v0": 4.479, "v1": -25.540, "v2": 35.878, "v3": -34.202, "v4": 18.767, "amplitude": 36.644, "phase_angle": 11.741, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.561, "filter_rmsd": 0.067, "frame": { "rmsd": 0.006, "origin": [ 188.991, 95.071, 169.368 ], "x_axis": [ 0.275, 0.919, -0.282 ], "y_axis": [ 0.931, -0.181, 0.318 ], "z_axis": [ 0.241, -0.350, -0.905 ], "quaternion": [ 0.217, 0.768, 0.602, -0.013 ] } }, { "index": 2528, "index_chain": 2528, "chain_name": "A", "nt_resnum": 2775, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2775", "linked_nts": [ "///A/2774", "///A/2776" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop", "alpha": -149.827, "beta": -129.754, "gamma": 104.644, "delta": 82.113, "epsilon": -130.581, "zeta": -119.473, "epsilon_zeta": -11.108, "bb_type": "--", "chi": -172.342, "glyco_bond": "anti", "C5prime_xyz": [ -1.482, 8.606, 1.239 ], "P_xyz": [ 1.119, 8.345, 1.425 ], "form": ".", "ssZp": 4.534, "Dp": 4.636, "splay_angle": 23.584, "splay_distance": 3.670, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 165.947, "theta": -117.507, "eta_prime": 177.163, "theta_prime": -125.224, "eta_base": -140.065, "theta_base": -81.701, "v0": 0.561, "v1": -22.618, "v2": 34.834, "v3": -35.497, "v4": 22.023, "amplitude": 36.577, "phase_angle": 17.761, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.108, "frame": { "rmsd": 0.007, "origin": [ 189.081, 94.652, 165.794 ], "x_axis": [ 0.741, 0.644, 0.191 ], "y_axis": [ 0.521, -0.730, 0.443 ], "z_axis": [ 0.425, -0.229, -0.876 ], "quaternion": [ 0.184, 0.915, 0.318, 0.168 ] } }, { "index": 2529, "index_chain": 2529, "chain_name": "A", "nt_resnum": 2776, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2776", "linked_nts": [ "///A/2775", "///A/2777" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": 127.730, "beta": -103.405, "gamma": 166.123, "delta": 81.888, "epsilon": -121.849, "zeta": -140.664, "epsilon_zeta": 18.815, "bb_type": "--", "chi": 166.595, "glyco_bond": "anti", "C5prime_xyz": [ -1.767, 8.111, 2.317 ], "P_xyz": [ 0.379, 8.908, 1.056 ], "form": ".", "ssZp": 4.627, "Dp": 4.690, "splay_angle": 36.568, "splay_distance": 5.333, "splay_ratio": 0.314, "d22": null, "d64": null, "eta": 152.451, "theta": 169.679, "eta_prime": 179.714, "theta_prime": 169.834, "eta_base": -106.909, "theta_base": 162.744, "v0": 1.233, "v1": -23.103, "v2": 34.987, "v3": -35.229, "v4": 21.446, "amplitude": 36.530, "phase_angle": 16.717, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 192.030, 95.305, 163.710 ], "x_axis": [ 0.859, -0.002, 0.511 ], "y_axis": [ -0.086, -0.986, 0.141 ], "z_axis": [ 0.504, -0.165, -0.848 ], "quaternion": [ 0.079, 0.961, -0.023, 0.264 ] } }, { "index": 2530, "index_chain": 2530, "chain_name": "A", "nt_resnum": 2777, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2777", "linked_nts": [ "///A/2776", "///A/2778" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": -42.552, "beta": 139.648, "gamma": 49.985, "delta": 84.689, "epsilon": -159.156, "zeta": -78.457, "epsilon_zeta": -80.699, "bb_type": "BI", "chi": -148.775, "glyco_bond": "anti", "C5prime_xyz": [ -1.257, 8.639, -0.105 ], "P_xyz": [ 1.282, 8.355, -0.694 ], "form": "A", "ssZp": 4.114, "Dp": 4.545, "splay_angle": 17.468, "splay_distance": 2.741, "splay_ratio": 0.152, "d22": null, "d64": null, "eta": 179.080, "theta": -146.768, "eta_prime": -178.857, "theta_prime": -155.341, "eta_base": 172.261, "theta_base": -144.235, "v0": 5.318, "v1": -25.671, "v2": 35.108, "v3": -33.041, "v4": 17.503, "amplitude": 35.678, "phase_angle": 10.259, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.570, "filter_rmsd": 0.039, "frame": { "rmsd": 0.009, "origin": [ 189.162, 97.128, 159.600 ], "x_axis": [ 0.971, -0.052, 0.235 ], "y_axis": [ 0.008, -0.969, -0.247 ], "z_axis": [ 0.241, 0.241, -0.940 ], "quaternion": [ -0.124, 0.985, -0.011, 0.121 ] } }, { "index": 2531, "index_chain": 2531, "chain_name": "A", "nt_resnum": 2778, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2778", "linked_nts": [ "///A/2777", "///A/2779" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate", "alpha": -62.575, "beta": 161.848, "gamma": 59.595, "delta": 81.710, "epsilon": -128.434, "zeta": 46.041, "epsilon_zeta": 185.525, "bb_type": "--", "chi": -143.529, "glyco_bond": "anti", "C5prime_xyz": [ -1.260, 8.655, -0.461 ], "P_xyz": [ 1.235, 8.756, -1.245 ], "form": ".", "ssZp": 3.640, "Dp": 4.754, "splay_angle": 25.364, "splay_distance": 4.044, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 173.715, "theta": -13.045, "eta_prime": -177.020, "theta_prime": -58.964, "eta_base": -150.243, "theta_base": -103.316, "v0": 4.583, "v1": -26.162, "v2": 36.626, "v3": -35.001, "v4": 19.216, "amplitude": 37.412, "phase_angle": 11.762, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.823, "filter_rmsd": 0.036, "frame": { "rmsd": 0.005, "origin": [ 189.633, 98.528, 157.291 ], "x_axis": [ 0.922, -0.387, -0.019 ], "y_axis": [ -0.326, -0.748, -0.578 ], "z_axis": [ 0.210, 0.539, -0.816 ], "quaternion": [ -0.299, 0.933, -0.191, 0.051 ] } }, { "index": 2532, "index_chain": 2532, "chain_name": "A", "nt_resnum": 2779, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2779", "linked_nts": [ "///A/2778", "///A/2780" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,splayed-apart", "alpha": 160.203, "beta": 123.157, "gamma": 76.101, "delta": 149.976, "epsilon": -140.904, "zeta": -25.521, "epsilon_zeta": -115.383, "bb_type": "--", "chi": -136.080, "glyco_bond": "anti", "C5prime_xyz": [ -2.119, 8.704, -0.314 ], "P_xyz": [ 0.492, 8.594, -0.496 ], "form": ".", "ssZp": 1.466, "Dp": 1.720, "splay_angle": 157.895, "splay_distance": 16.245, "splay_ratio": 0.982, "d22": null, "d64": null, "eta": 21.669, "theta": 20.786, "eta_prime": 117.150, "theta_prime": -51.014, "eta_base": 118.410, "theta_base": 51.853, "v0": -23.324, "v1": 38.787, "v2": -38.458, "v3": 25.953, "v4": -1.841, "amplitude": 40.042, "phase_angle": 163.831, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.087, "filter_rmsd": 0.037, "frame": { "rmsd": 0.005, "origin": [ 192.151, 98.593, 154.126 ], "x_axis": [ -0.716, 0.615, 0.330 ], "y_axis": [ -0.682, -0.514, -0.521 ], "z_axis": [ -0.151, -0.598, 0.787 ], "quaternion": [ 0.373, 0.051, -0.322, 0.868 ] } }, { "index": 2533, "index_chain": 2533, "chain_name": "A", "nt_resnum": 2780, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2780", "linked_nts": [ "///A/2779", "///A/2781" ], "nt_type": "RNA", "dbn": "}", "summary": "pseudoknotted,turn,syn,~C2'-endo,isolated-canonical,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": 112.152, "beta": 118.913, "gamma": -34.355, "delta": 148.178, "epsilon": -113.755, "zeta": -65.739, "epsilon_zeta": -48.016, "bb_type": "--", "chi": 74.258, "glyco_bond": "syn", "C5prime_xyz": [ -5.074, 4.359, 1.879 ], "P_xyz": [ -6.600, 2.604, 0.686 ], "form": ".", "ssZp": -1.102, "Dp": 1.222, "splay_angle": 98.917, "splay_distance": 14.124, "splay_ratio": 0.762, "d22": null, "d64": null, "eta": -131.624, "theta": -34.060, "eta_prime": -80.354, "theta_prime": -47.216, "eta_base": -174.696, "theta_base": -12.177, "v0": -20.253, "v1": 34.710, "v2": -35.014, "v3": 24.274, "v4": -2.696, "amplitude": 36.176, "phase_angle": 165.438, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 190.754, 85.774, 144.244 ], "x_axis": [ -0.295, -0.836, -0.463 ], "y_axis": [ -0.102, -0.454, 0.885 ], "z_axis": [ -0.950, 0.308, 0.049 ], "quaternion": [ -0.274, -0.527, 0.445, 0.670 ] } }, { "index": 2534, "index_chain": 2534, "chain_name": "A", "nt_resnum": 2781, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2781", "linked_nts": [ "///A/2780", "///A/2782" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,splayed-apart", "alpha": -123.056, "beta": -129.541, "gamma": 90.689, "delta": 83.914, "epsilon": -155.200, "zeta": -57.817, "epsilon_zeta": -97.383, "bb_type": "BI", "chi": -169.209, "glyco_bond": "anti", "C5prime_xyz": [ -1.351, 8.666, 1.060 ], "P_xyz": [ 1.193, 8.305, 1.592 ], "form": ".", "ssZp": 4.491, "Dp": 4.535, "splay_angle": 22.415, "splay_distance": 3.438, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 157.868, "theta": -123.324, "eta_prime": -159.063, "theta_prime": -125.086, "eta_base": -151.953, "theta_base": -72.204, "v0": 1.345, "v1": -22.494, "v2": 33.853, "v3": -33.959, "v4": 20.592, "amplitude": 35.293, "phase_angle": 16.424, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.004, "origin": [ 194.351, 95.508, 153.827 ], "x_axis": [ -0.960, 0.027, -0.280 ], "y_axis": [ 0.010, -0.992, -0.129 ], "z_axis": [ -0.281, -0.127, 0.951 ], "quaternion": [ 0.004, -0.142, -0.065, 0.988 ] } }, { "index": 2535, "index_chain": 2535, "chain_name": "A", "nt_resnum": 2782, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2782", "linked_nts": [ "///A/2781", "///A/2783" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop", "alpha": -78.023, "beta": 172.774, "gamma": 61.267, "delta": 85.204, "epsilon": -112.339, "zeta": -123.292, "epsilon_zeta": 10.953, "bb_type": "--", "chi": -151.563, "glyco_bond": "anti", "C5prime_xyz": [ -1.245, 8.630, 0.045 ], "P_xyz": [ 1.363, 8.769, -0.259 ], "form": ".", "ssZp": 3.849, "Dp": 4.748, "splay_angle": 24.454, "splay_distance": 3.948, "splay_ratio": 0.222, "d22": null, "d64": null, "eta": 172.143, "theta": -157.340, "eta_prime": -168.094, "theta_prime": -151.617, "eta_base": -94.479, "theta_base": -124.401, "v0": 5.167, "v1": -25.332, "v2": 34.784, "v3": -32.738, "v4": 17.439, "amplitude": 35.366, "phase_angle": 10.416, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.706, "filter_rmsd": 0.037, "frame": { "rmsd": 0.007, "origin": [ 191.416, 94.922, 155.519 ], "x_axis": [ -0.668, -0.741, -0.075 ], "y_axis": [ 0.679, -0.647, 0.347 ], "z_axis": [ -0.305, 0.181, 0.935 ], "quaternion": [ -0.394, -0.105, 0.147, 0.901 ] } }, { "index": 2536, "index_chain": 2536, "chain_name": "A", "nt_resnum": 2783, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2783", "linked_nts": [ "///A/2782", "///A/2784" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,splayed-apart", "alpha": -45.089, "beta": 115.212, "gamma": 63.592, "delta": 81.462, "epsilon": -154.472, "zeta": -56.271, "epsilon_zeta": -98.201, "bb_type": "BI", "chi": -155.584, "glyco_bond": "anti", "C5prime_xyz": [ -1.331, 8.707, 0.252 ], "P_xyz": [ 0.875, 8.200, -1.069 ], "form": ".", "ssZp": 4.344, "Dp": 4.630, "splay_angle": 130.213, "splay_distance": 15.774, "splay_ratio": 0.907, "d22": 10.196, "d64": 12.954, "eta": 158.643, "theta": -133.696, "eta_prime": 179.768, "theta_prime": 172.221, "eta_base": -139.987, "theta_base": 123.365, "v0": 3.966, "v1": -26.032, "v2": 37.042, "v3": -35.679, "v4": 20.033, "amplitude": 37.972, "phase_angle": 12.711, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.320, "filter_rmsd": 0.106, "frame": { "rmsd": 0.005, "origin": [ 190.246, 94.871, 159.289 ], "x_axis": [ -0.313, -0.948, 0.058 ], "y_axis": [ 0.849, -0.252, 0.464 ], "z_axis": [ -0.426, 0.194, 0.884 ], "quaternion": [ 0.574, 0.118, -0.210, -0.782 ] } }, { "index": 2537, "index_chain": 2537, "chain_name": "A", "nt_resnum": 2784, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2784", "linked_nts": [ "///A/2783", "///A/2785" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -147.606, "beta": 114.535, "gamma": -17.131, "delta": 82.539, "epsilon": 18.397, "zeta": 51.151, "epsilon_zeta": -32.755, "bb_type": "--", "chi": -171.421, "glyco_bond": "anti", "C5prime_xyz": [ -1.128, 8.499, 1.224 ], "P_xyz": [ 0.691, 7.937, 3.022 ], "form": ".", "ssZp": 3.185, "Dp": 3.422, "splay_angle": 123.178, "splay_distance": 16.193, "splay_ratio": 0.880, "d22": 7.805, "d64": 10.018, "eta": 22.977, "theta": 163.859, "eta_prime": 28.326, "theta_prime": 119.928, "eta_base": 11.514, "theta_base": 62.764, "v0": 6.701, "v1": -27.697, "v2": 37.045, "v3": -34.132, "v4": 17.256, "amplitude": 37.454, "phase_angle": 8.476, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 199.071, 103.384, 169.213 ], "x_axis": [ 0.514, -0.603, 0.610 ], "y_axis": [ -0.698, -0.707, -0.111 ], "z_axis": [ 0.498, -0.369, -0.785 ], "quaternion": [ 0.074, 0.867, -0.375, 0.320 ] } }, { "index": 2538, "index_chain": 2538, "chain_name": "A", "nt_resnum": 2785, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2785", "linked_nts": [ "///A/2784", "///A/2786" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,phosphate,splayed-apart", "alpha": 124.732, "beta": 142.507, "gamma": 54.259, "delta": 136.749, "epsilon": 80.091, "zeta": -59.250, "epsilon_zeta": -220.659, "bb_type": "--", "chi": -116.193, "glyco_bond": "anti", "C5prime_xyz": [ -1.837, 8.401, -1.470 ], "P_xyz": [ 0.782, 8.379, -1.457 ], "form": "Z", "ssZp": 0.845, "Dp": 1.421, "splay_angle": 25.382, "splay_distance": 4.505, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": -15.398, "theta": -124.381, "eta_prime": 69.960, "theta_prime": 108.882, "eta_base": 84.594, "theta_base": 82.622, "v0": -19.206, "v1": 31.025, "v2": -30.475, "v3": 20.175, "v4": -0.833, "amplitude": 31.920, "phase_angle": 162.694, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.007, "origin": [ 185.958, 94.425, 166.053 ], "x_axis": [ 0.670, -0.717, 0.193 ], "y_axis": [ 0.742, 0.643, -0.188 ], "z_axis": [ 0.011, 0.270, 0.963 ], "quaternion": [ 0.905, -0.127, -0.050, -0.403 ] } }, { "index": 2539, "index_chain": 2539, "chain_name": "A", "nt_resnum": 2786, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2786", "linked_nts": [ "///A/2785", "///A/2787" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate", "alpha": 160.737, "beta": 162.398, "gamma": 172.803, "delta": 84.271, "epsilon": -159.470, "zeta": 83.127, "epsilon_zeta": 117.403, "bb_type": "--", "chi": 157.327, "glyco_bond": "anti", "C5prime_xyz": [ -1.725, 7.645, 2.728 ], "P_xyz": [ -0.314, 9.789, 3.168 ], "form": ".", "ssZp": 3.886, "Dp": 4.511, "splay_angle": 27.295, "splay_distance": 4.963, "splay_ratio": 0.268, "d22": null, "d64": null, "eta": 159.750, "theta": -70.590, "eta_prime": 128.199, "theta_prime": -103.896, "eta_base": 112.075, "theta_base": -78.192, "v0": 4.055, "v1": -24.187, "v2": 34.001, "v3": -32.649, "v4": 18.072, "amplitude": 34.776, "phase_angle": 12.124, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.015, "origin": [ 185.034, 92.879, 161.924 ], "x_axis": [ 0.759, -0.330, 0.561 ], "y_axis": [ 0.382, 0.924, 0.026 ], "z_axis": [ -0.527, 0.195, 0.827 ], "quaternion": [ 0.937, -0.045, -0.290, -0.190 ] } }, { "index": 2540, "index_chain": 2540, "chain_name": "A", "nt_resnum": 2787, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2787", "linked_nts": [ "///A/2786", "///A/2788" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop", "alpha": -78.702, "beta": -76.842, "gamma": -136.519, "delta": 82.062, "epsilon": -123.638, "zeta": -58.116, "epsilon_zeta": -65.522, "bb_type": "--", "chi": -176.162, "glyco_bond": "anti", "C5prime_xyz": [ -1.511, 8.476, 1.472 ], "P_xyz": [ -1.846, 10.302, -0.396 ], "form": ".", "ssZp": 4.636, "Dp": 4.697, "splay_angle": 36.219, "splay_distance": 5.813, "splay_ratio": 0.314, "d22": null, "d64": null, "eta": 100.274, "theta": -173.114, "eta_prime": 130.401, "theta_prime": -151.254, "eta_base": -172.492, "theta_base": -99.496, "v0": 2.124, "v1": -23.871, "v2": 35.368, "v3": -35.131, "v4": 20.840, "amplitude": 36.685, "phase_angle": 15.397, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 185.283, 91.253, 166.606 ], "x_axis": [ 0.968, 0.242, -0.060 ], "y_axis": [ -0.246, 0.890, -0.384 ], "z_axis": [ -0.039, 0.386, 0.921 ], "quaternion": [ 0.972, -0.198, 0.005, 0.125 ] } }, { "index": 2541, "index_chain": 2541, "chain_name": "A", "nt_resnum": 2788, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2788", "linked_nts": [ "///A/2787", "///A/2789" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -56.595, "beta": 158.002, "gamma": 60.336, "delta": 76.764, "epsilon": -173.166, "zeta": -88.133, "epsilon_zeta": -85.032, "bb_type": "BI", "chi": -170.435, "glyco_bond": "anti", "C5prime_xyz": [ -1.945, 8.777, 1.051 ], "P_xyz": [ 0.536, 9.598, 1.110 ], "form": "A", "ssZp": 4.394, "Dp": 4.396, "splay_angle": 21.590, "splay_distance": 3.398, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": 158.185, "theta": -143.672, "eta_prime": -164.478, "theta_prime": -147.328, "eta_base": -88.700, "theta_base": -112.774, "v0": -3.668, "v1": -20.545, "v2": 35.603, "v3": -38.773, "v4": 26.718, "amplitude": 38.949, "phase_angle": 23.925, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.542, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 189.193, 94.762, 169.094 ], "x_axis": [ 0.305, 0.881, -0.362 ], "y_axis": [ -0.952, 0.268, -0.149 ], "z_axis": [ -0.034, 0.390, 0.920 ], "quaternion": [ 0.789, -0.171, 0.104, 0.580 ] } }, { "index": 2542, "index_chain": 2542, "chain_name": "A", "nt_resnum": 2789, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2789", "linked_nts": [ "///A/2788", "///A/2790" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -176.646, "beta": -135.129, "gamma": 140.576, "delta": 81.101, "epsilon": -137.923, "zeta": -75.310, "epsilon_zeta": -62.613, "bb_type": "BI", "chi": -171.600, "glyco_bond": "anti", "C5prime_xyz": [ -1.603, 8.702, 1.197 ], "P_xyz": [ 0.812, 9.191, 0.352 ], "form": ".", "ssZp": 4.497, "Dp": 4.556, "splay_angle": 31.635, "splay_distance": 5.351, "splay_ratio": 0.279, "d22": null, "d64": null, "eta": 164.033, "theta": -124.410, "eta_prime": 179.972, "theta_prime": -142.184, "eta_base": -129.679, "theta_base": -135.352, "v0": -2.496, "v1": -19.538, "v2": 32.891, "v3": -35.331, "v4": 23.829, "amplitude": 35.625, "phase_angle": 22.591, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 190.750, 96.658, 171.445 ], "x_axis": [ -0.365, 0.857, -0.364 ], "y_axis": [ -0.926, -0.297, 0.232 ], "z_axis": [ 0.090, 0.422, 0.902 ], "quaternion": [ 0.557, -0.085, 0.204, 0.801 ] } }, { "index": 2543, "index_chain": 2543, "chain_name": "A", "nt_resnum": 2790, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2790", "linked_nts": [ "///A/2789", "///A/2791" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -172.381, "beta": 167.362, "gamma": 150.066, "delta": 81.467, "epsilon": -135.062, "zeta": -80.468, "epsilon_zeta": -54.594, "bb_type": "BI", "chi": -177.526, "glyco_bond": "anti", "C5prime_xyz": [ -1.453, 8.348, 1.552 ], "P_xyz": [ 0.105, 10.169, 0.517 ], "form": "A", "ssZp": 4.733, "Dp": 4.740, "splay_angle": 23.880, "splay_distance": 3.792, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 151.295, "theta": -163.275, "eta_prime": 165.508, "theta_prime": -157.982, "eta_base": -167.611, "theta_base": -123.595, "v0": 4.758, "v1": -26.550, "v2": 37.120, "v3": -35.454, "v4": 19.369, "amplitude": 37.898, "phase_angle": 11.631, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.090, "filter_rmsd": 0.036, "frame": { "rmsd": 0.008, "origin": [ 193.350, 99.659, 175.033 ], "x_axis": [ -0.690, 0.532, -0.491 ], "y_axis": [ -0.706, -0.644, 0.295 ], "z_axis": [ -0.159, 0.550, 0.820 ], "quaternion": [ 0.349, -0.183, 0.238, 0.888 ] } }, { "index": 2544, "index_chain": 2544, "chain_name": "A", "nt_resnum": 2791, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2791", "linked_nts": [ "///A/2790", "///A/2792" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -44.531, "beta": 157.952, "gamma": 51.143, "delta": 79.695, "epsilon": -142.984, "zeta": -68.565, "epsilon_zeta": -74.420, "bb_type": "BI", "chi": -168.702, "glyco_bond": "anti", "C5prime_xyz": [ -1.725, 8.713, 1.012 ], "P_xyz": [ 0.819, 9.231, 1.335 ], "form": ".", "ssZp": 4.513, "Dp": 4.593, "splay_angle": 24.565, "splay_distance": 3.849, "splay_ratio": 0.213, "d22": null, "d64": null, "eta": 172.366, "theta": -134.875, "eta_prime": -169.840, "theta_prime": -134.500, "eta_base": -122.209, "theta_base": -83.031, "v0": -1.447, "v1": -21.541, "v2": 35.002, "v3": -36.799, "v4": 24.106, "amplitude": 37.429, "phase_angle": 20.749, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.567, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 192.896, 103.224, 176.245 ], "x_axis": [ -0.976, 0.052, -0.209 ], "y_axis": [ -0.163, -0.812, 0.561 ], "z_axis": [ -0.141, 0.582, 0.801 ], "quaternion": [ 0.057, -0.092, 0.302, 0.947 ] } }, { "index": 2545, "index_chain": 2545, "chain_name": "A", "nt_resnum": 2792, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2792", "linked_nts": [ "///A/2791", "///A/2793" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -59.852, "beta": 164.217, "gamma": 48.218, "delta": 77.975, "epsilon": -99.057, "zeta": -145.356, "epsilon_zeta": 46.300, "bb_type": "--", "chi": -168.298, "glyco_bond": "anti", "C5prime_xyz": [ -1.397, 8.661, 0.990 ], "P_xyz": [ 1.184, 9.013, 1.218 ], "form": ".", "ssZp": 4.373, "Dp": 4.789, "splay_angle": 57.663, "splay_distance": 8.932, "splay_ratio": 0.482, "d22": null, "d64": null, "eta": 170.609, "theta": 167.333, "eta_prime": -173.781, "theta_prime": -175.626, "eta_base": -106.203, "theta_base": -170.392, "v0": 3.187, "v1": -26.300, "v2": 38.280, "v3": -37.468, "v4": 21.580, "amplitude": 39.466, "phase_angle": 14.085, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.893, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 189.971, 104.969, 178.037 ], "x_axis": [ -0.751, -0.611, 0.250 ], "y_axis": [ 0.625, -0.536, 0.568 ], "z_axis": [ -0.213, 0.582, 0.784 ], "quaternion": [ -0.353, 0.010, 0.328, 0.876 ] } }, { "index": 2546, "index_chain": 2546, "chain_name": "A", "nt_resnum": 2793, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2793", "linked_nts": [ "///A/2792", "///A/2794" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -82.477, "beta": 145.647, "gamma": 67.916, "delta": 78.020, "epsilon": -162.269, "zeta": -111.551, "epsilon_zeta": -50.718, "bb_type": "BI", "chi": -166.533, "glyco_bond": "anti", "C5prime_xyz": [ -1.754, 8.743, 0.873 ], "P_xyz": [ 0.727, 9.310, 0.307 ], "form": ".", "ssZp": 4.463, "Dp": 4.506, "splay_angle": 43.496, "splay_distance": 6.201, "splay_ratio": 0.373, "d22": null, "d64": null, "eta": 174.198, "theta": -164.084, "eta_prime": 168.087, "theta_prime": 166.874, "eta_base": 160.416, "theta_base": 127.838, "v0": -1.409, "v1": -22.491, "v2": 36.496, "v3": -38.382, "v4": 25.091, "amplitude": 39.009, "phase_angle": 20.677, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.033, "filter_rmsd": 0.040, "frame": { "rmsd": 0.006, "origin": [ 192.096, 112.760, 181.852 ], "x_axis": [ -0.764, -0.564, -0.314 ], "y_axis": [ 0.453, -0.814, 0.362 ], "z_axis": [ -0.460, 0.134, 0.878 ], "quaternion": [ -0.274, -0.208, 0.134, 0.929 ] } }, { "index": 2547, "index_chain": 2547, "chain_name": "A", "nt_resnum": 2794, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2794", "linked_nts": [ "///A/2793", "///A/2795" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate", "alpha": 125.942, "beta": 158.192, "gamma": 175.115, "delta": 79.295, "epsilon": -122.163, "zeta": -10.931, "epsilon_zeta": -111.232, "bb_type": "--", "chi": 46.495, "glyco_bond": "syn", "C5prime_xyz": [ -5.347, 3.481, 0.964 ], "P_xyz": [ -6.697, 2.974, 3.149 ], "form": ".", "ssZp": -3.033, "Dp": 4.726, "splay_angle": 72.497, "splay_distance": 9.040, "splay_ratio": 0.592, "d22": null, "d64": null, "eta": 113.798, "theta": -74.144, "eta_prime": 103.336, "theta_prime": -80.363, "eta_base": 90.621, "theta_base": -53.860, "v0": 0.890, "v1": -23.562, "v2": 36.034, "v3": -36.531, "v4": 22.458, "amplitude": 37.741, "phase_angle": 17.298, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.016, "filter_rmsd": 0.043, "frame": { "rmsd": 0.008, "origin": [ 196.851, 116.003, 184.162 ], "x_axis": [ 0.659, 0.606, -0.446 ], "y_axis": [ 0.449, 0.159, 0.879 ], "z_axis": [ 0.604, -0.780, -0.167 ], "quaternion": [ 0.643, 0.645, 0.408, 0.061 ] } }, { "index": 2548, "index_chain": 2548, "chain_name": "A", "nt_resnum": 2795, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2795", "linked_nts": [ "///A/2794", "///A/2796" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 112.490, "beta": 126.805, "gamma": -81.056, "delta": 80.315, "epsilon": -141.477, "zeta": -33.097, "epsilon_zeta": -108.380, "bb_type": "BI", "chi": -4.563, "glyco_bond": "syn", "C5prime_xyz": [ -4.817, 3.726, -2.059 ], "P_xyz": [ -5.642, 3.375, -4.520 ], "form": ".", "ssZp": -4.768, "Dp": 4.755, "splay_angle": 30.903, "splay_distance": 4.759, "splay_ratio": 0.270, "d22": null, "d64": null, "eta": 173.923, "theta": -138.892, "eta_prime": -153.911, "theta_prime": -123.547, "eta_base": -103.360, "theta_base": -108.015, "v0": 5.823, "v1": -28.000, "v2": 38.346, "v3": -36.022, "v4": 19.080, "amplitude": 38.964, "phase_angle": 10.221, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.013, "frame": { "rmsd": 0.013, "origin": [ 190.785, 109.389, 185.257 ], "x_axis": [ -0.856, -0.420, -0.301 ], "y_axis": [ -0.341, 0.897, -0.282 ], "z_axis": [ 0.388, -0.139, -0.911 ], "quaternion": [ 0.180, -0.199, 0.957, -0.110 ] } }, { "index": 2549, "index_chain": 2549, "chain_name": "A", "nt_resnum": 2796, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2796", "linked_nts": [ "///A/2795", "///A/2797" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -97.588, "beta": -160.737, "gamma": 54.062, "delta": 72.470, "epsilon": 100.397, "zeta": 65.354, "epsilon_zeta": 35.044, "bb_type": "--", "chi": -173.680, "glyco_bond": "anti", "C5prime_xyz": [ -1.368, 8.580, 1.323 ], "P_xyz": [ 1.028, 8.856, 2.336 ], "form": "A", "ssZp": 3.669, "Dp": 3.670, "splay_angle": 21.642, "splay_distance": 3.621, "splay_ratio": 0.193, "d22": 4.490, "d64": 4.238, "eta": 163.525, "theta": -120.099, "eta_prime": -158.908, "theta_prime": -127.928, "eta_base": -143.262, "theta_base": -102.174, "v0": 4.196, "v1": -28.127, "v2": 40.245, "v3": -38.837, "v4": 21.846, "amplitude": 41.287, "phase_angle": 12.896, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.034, "filter_rmsd": 0.060, "frame": { "rmsd": 0.006, "origin": [ 187.230, 107.893, 188.044 ], "x_axis": [ 0.969, -0.102, 0.225 ], "y_axis": [ 0.151, 0.966, -0.211 ], "z_axis": [ -0.196, 0.238, 0.951 ], "quaternion": [ 0.986, -0.114, -0.107, -0.064 ] } }, { "index": 2550, "index_chain": 2550, "chain_name": "A", "nt_resnum": 2797, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2797", "linked_nts": [ "///A/2796", "///A/2798" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -157.614, "beta": -177.319, "gamma": 56.048, "delta": 80.980, "epsilon": -160.172, "zeta": -69.029, "epsilon_zeta": -91.143, "bb_type": "BI", "chi": -157.484, "glyco_bond": "anti", "C5prime_xyz": [ -1.673, 8.885, 0.308 ], "P_xyz": [ 0.749, 9.748, 0.742 ], "form": "A", "ssZp": 4.199, "Dp": 4.396, "splay_angle": 18.497, "splay_distance": 3.091, "splay_ratio": 0.164, "d22": 4.258, "d64": 4.168, "eta": 141.453, "theta": -152.499, "eta_prime": 166.622, "theta_prime": -152.946, "eta_base": -148.010, "theta_base": -133.433, "v0": -3.694, "v1": -18.819, "v2": 32.743, "v3": -35.833, "v4": 24.944, "amplitude": 35.946, "phase_angle": 24.371, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.058, "frame": { "rmsd": 0.009, "origin": [ 186.966, 107.062, 191.559 ], "x_axis": [ 0.876, 0.469, -0.110 ], "y_axis": [ -0.479, 0.818, -0.318 ], "z_axis": [ -0.059, 0.332, 0.942 ], "quaternion": [ 0.953, -0.170, 0.013, 0.249 ] } }, { "index": 2551, "index_chain": 2551, "chain_name": "A", "nt_resnum": 2798, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2798", "linked_nts": [ "///A/2797", "///A/2799" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -69.593, "beta": 177.374, "gamma": 49.914, "delta": 79.550, "epsilon": 178.726, "zeta": -79.647, "epsilon_zeta": -101.627, "bb_type": "BI", "chi": -153.029, "glyco_bond": "anti", "C5prime_xyz": [ -1.614, 8.897, 0.062 ], "P_xyz": [ 0.865, 9.696, 0.305 ], "form": ".", "ssZp": 4.104, "Dp": 4.258, "splay_angle": 27.415, "splay_distance": 4.269, "splay_ratio": 0.237, "d22": 4.617, "d64": 4.426, "eta": 161.962, "theta": -145.359, "eta_prime": 176.028, "theta_prime": -144.487, "eta_base": -150.788, "theta_base": -105.852, "v0": -3.270, "v1": -19.714, "v2": 33.862, "v3": -36.701, "v4": 25.219, "amplitude": 36.946, "phase_angle": 23.574, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.882, "filter_rmsd": 0.058, "frame": { "rmsd": 0.008, "origin": [ 187.704, 106.758, 194.545 ], "x_axis": [ 0.546, 0.752, -0.370 ], "y_axis": [ -0.828, 0.552, -0.099 ], "z_axis": [ 0.130, 0.360, 0.924 ], "quaternion": [ 0.869, -0.132, 0.144, 0.454 ] } }, { "index": 2552, "index_chain": 2552, "chain_name": "A", "nt_resnum": 2799, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2799", "linked_nts": [ "///A/2798", "///A/2800" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -169.772, "beta": -135.702, "gamma": 131.870, "delta": 79.595, "epsilon": -105.708, "zeta": -51.954, "epsilon_zeta": -53.754, "bb_type": "--", "chi": -161.401, "glyco_bond": "anti", "C5prime_xyz": [ -1.316, 8.768, 0.616 ], "P_xyz": [ 1.058, 8.910, -0.462 ], "form": ".", "ssZp": 4.151, "Dp": 4.717, "splay_angle": 59.765, "splay_distance": 9.432, "splay_ratio": 0.498, "d22": 3.801, "d64": 4.550, "eta": 173.785, "theta": -90.851, "eta_prime": -174.035, "theta_prime": -95.053, "eta_base": -127.174, "theta_base": -67.878, "v0": 1.058, "v1": -23.529, "v2": 35.829, "v3": -36.249, "v4": 22.167, "amplitude": 37.477, "phase_angle": 17.055, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.005, "origin": [ 189.238, 109.344, 197.574 ], "x_axis": [ -0.131, 0.923, -0.363 ], "y_axis": [ -0.971, -0.045, 0.234 ], "z_axis": [ 0.199, 0.383, 0.902 ], "quaternion": [ 0.657, -0.057, 0.214, 0.721 ] } }, { "index": 2553, "index_chain": 2553, "chain_name": "A", "nt_resnum": 2800, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2800", "linked_nts": [ "///A/2799", "///A/2801" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end,coaxial-stack,junction-loop", "alpha": -66.655, "beta": -148.646, "gamma": 26.672, "delta": 82.245, "epsilon": -144.892, "zeta": -74.402, "epsilon_zeta": -70.490, "bb_type": "BI", "chi": -175.588, "glyco_bond": "anti", "C5prime_xyz": [ -1.333, 8.507, 1.474 ], "P_xyz": [ 0.215, 8.794, 3.555 ], "form": "A", "ssZp": 4.576, "Dp": 4.614, "splay_angle": 21.608, "splay_distance": 3.413, "splay_ratio": 0.190, "d22": 4.448, "d64": 4.341, "eta": 152.019, "theta": -153.161, "eta_prime": 176.066, "theta_prime": -143.817, "eta_base": -133.922, "theta_base": -110.681, "v0": 2.312, "v1": -24.048, "v2": 35.421, "v3": -35.120, "v4": 20.690, "amplitude": 36.690, "phase_angle": 15.117, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1m", "suiteness": 0.010, "filter_rmsd": 0.063, "frame": { "rmsd": 0.007, "origin": [ 184.331, 116.893, 200.384 ], "x_axis": [ -0.421, -0.304, -0.854 ], "y_axis": [ 0.160, -0.952, 0.260 ], "z_axis": [ -0.893, -0.027, 0.450 ], "quaternion": [ -0.138, -0.520, 0.069, 0.840 ] } }, { "index": 2554, "index_chain": 2554, "chain_name": "A", "nt_resnum": 2801, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2801", "linked_nts": [ "///A/2800", "///A/2802" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -62.656, "beta": 176.832, "gamma": 46.307, "delta": 81.889, "epsilon": -153.845, "zeta": -76.135, "epsilon_zeta": -77.710, "bb_type": "BI", "chi": -164.774, "glyco_bond": "anti", "C5prime_xyz": [ -1.292, 8.699, 0.805 ], "P_xyz": [ 1.227, 9.075, 1.407 ], "form": "A", "ssZp": 4.496, "Dp": 4.585, "splay_angle": 24.674, "splay_distance": 3.893, "splay_ratio": 0.215, "d22": 4.487, "d64": 4.697, "eta": 164.661, "theta": -152.140, "eta_prime": 177.558, "theta_prime": -149.816, "eta_base": -143.267, "theta_base": -131.305, "v0": 2.005, "v1": -23.825, "v2": 35.381, "v3": -35.200, "v4": 20.931, "amplitude": 36.725, "phase_angle": 15.550, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.894, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 181.285, 118.341, 200.909 ], "x_axis": [ -0.187, -0.784, -0.592 ], "y_axis": [ 0.334, -0.618, 0.712 ], "z_axis": [ -0.924, -0.064, 0.377 ], "quaternion": [ -0.378, -0.513, 0.219, 0.739 ] } }, { "index": 2555, "index_chain": 2555, "chain_name": "A", "nt_resnum": 2802, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2802", "linked_nts": [ "///A/2801", "///A/2803" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -61.867, "beta": 171.467, "gamma": 56.348, "delta": 82.003, "epsilon": -154.654, "zeta": -68.474, "epsilon_zeta": -86.180, "bb_type": "BI", "chi": -165.740, "glyco_bond": "anti", "C5prime_xyz": [ -1.512, 8.686, 0.849 ], "P_xyz": [ 1.043, 9.153, 1.162 ], "form": "A", "ssZp": 4.466, "Dp": 4.546, "splay_angle": 27.064, "splay_distance": 4.304, "splay_ratio": 0.236, "d22": 4.554, "d64": 4.763, "eta": 172.121, "theta": -144.695, "eta_prime": -175.695, "theta_prime": -144.832, "eta_base": -145.506, "theta_base": -120.844, "v0": 0.907, "v1": -23.117, "v2": 35.223, "v3": -35.695, "v4": 21.944, "amplitude": 36.878, "phase_angle": 17.228, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.954, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 177.498, 119.244, 200.943 ], "x_axis": [ 0.051, -0.967, -0.248 ], "y_axis": [ 0.386, -0.210, 0.899 ], "z_axis": [ -0.921, -0.141, 0.362 ], "quaternion": [ 0.549, 0.474, -0.307, -0.617 ] } }, { "index": 2556, "index_chain": 2556, "chain_name": "A", "nt_resnum": 2803, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2803", "linked_nts": [ "///A/2802", "///A/2804" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -75.625, "beta": -177.695, "gamma": 58.559, "delta": 79.574, "epsilon": -145.043, "zeta": -59.465, "epsilon_zeta": -85.578, "bb_type": "BI", "chi": -166.626, "glyco_bond": "anti", "C5prime_xyz": [ -1.454, 8.740, 0.897 ], "P_xyz": [ 1.067, 9.255, 1.365 ], "form": ".", "ssZp": 4.539, "Dp": 4.646, "splay_angle": 27.114, "splay_distance": 4.237, "splay_ratio": 0.235, "d22": null, "d64": null, "eta": 169.037, "theta": -133.059, "eta_prime": -179.654, "theta_prime": -130.770, "eta_base": -141.967, "theta_base": -85.110, "v0": 1.318, "v1": -24.435, "v2": 36.981, "v3": -37.177, "v4": 22.600, "amplitude": 38.598, "phase_angle": 16.643, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.852, "filter_rmsd": 0.061, "frame": { "rmsd": 0.006, "origin": [ 173.311, 118.282, 200.687 ], "x_axis": [ 0.395, -0.891, 0.225 ], "y_axis": [ 0.352, 0.372, 0.859 ], "z_axis": [ -0.849, -0.260, 0.461 ], "quaternion": [ 0.746, 0.375, -0.359, -0.417 ] } }, { "index": 2557, "index_chain": 2557, "chain_name": "A", "nt_resnum": 2804, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2804", "linked_nts": [ "///A/2803", "///A/2805" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -81.266, "beta": 165.575, "gamma": 71.850, "delta": 79.233, "epsilon": -145.301, "zeta": -125.523, "epsilon_zeta": -19.778, "bb_type": "--", "chi": -172.334, "glyco_bond": "anti", "C5prime_xyz": [ -1.485, 8.526, 1.209 ], "P_xyz": [ 1.052, 9.089, 0.903 ], "form": ".", "ssZp": 4.684, "Dp": 4.705, "splay_angle": 70.187, "splay_distance": 10.291, "splay_ratio": 0.577, "d22": null, "d64": null, "eta": 160.186, "theta": 157.884, "eta_prime": -175.931, "theta_prime": 175.667, "eta_base": -106.807, "theta_base": -178.887, "v0": 3.678, "v1": -26.923, "v2": 38.646, "v3": -37.520, "v4": 21.312, "amplitude": 39.720, "phase_angle": 13.352, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.385, "filter_rmsd": 0.040, "frame": { "rmsd": 0.010, "origin": [ 171.707, 114.932, 202.727 ], "x_axis": [ 0.528, -0.345, 0.776 ], "y_axis": [ -0.086, 0.888, 0.453 ], "z_axis": [ -0.845, -0.306, 0.439 ], "quaternion": [ 0.845, 0.224, -0.480, -0.076 ] } }, { "index": 2558, "index_chain": 2558, "chain_name": "A", "nt_resnum": 2805, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2805", "linked_nts": [ "///A/2804", "///A/2806" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart", "alpha": -31.432, "beta": -157.447, "gamma": 61.348, "delta": 144.730, "epsilon": -99.672, "zeta": 92.173, "epsilon_zeta": 168.155, "bb_type": "--", "chi": -81.657, "glyco_bond": "anti", "C5prime_xyz": [ -3.101, 7.404, -2.681 ], "P_xyz": [ -0.985, 8.736, -3.454 ], "form": ".", "ssZp": 0.791, "Dp": 0.948, "splay_angle": 160.910, "splay_distance": 17.610, "splay_ratio": 0.986, "d22": null, "d64": null, "eta": -101.228, "theta": 129.313, "eta_prime": -114.995, "theta_prime": 113.121, "eta_base": -160.065, "theta_base": -152.538, "v0": -25.366, "v1": 38.185, "v2": -35.633, "v3": 21.957, "v4": 1.919, "amplitude": 38.335, "phase_angle": 158.358, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.009, "origin": [ 161.942, 113.410, 199.856 ], "x_axis": [ 0.324, -0.774, 0.544 ], "y_axis": [ 0.090, 0.598, 0.797 ], "z_axis": [ -0.942, -0.209, 0.263 ], "quaternion": [ 0.739, 0.340, -0.503, -0.292 ] } }, { "index": 2559, "index_chain": 2559, "chain_name": "A", "nt_resnum": 2806, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2806", "linked_nts": [ "///A/2805", "///A/2807" ], "nt_type": "RNA", "dbn": "]", "summary": "pseudoknotted,turn,anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart", "alpha": 69.879, "beta": 125.976, "gamma": 48.617, "delta": 88.221, "epsilon": -78.907, "zeta": 97.927, "epsilon_zeta": 183.166, "bb_type": "--", "chi": -108.568, "glyco_bond": "anti", "C5prime_xyz": [ -1.783, 7.980, -2.279 ], "P_xyz": [ 0.401, 6.947, -3.294 ], "form": ".", "ssZp": 0.349, "Dp": 4.467, "splay_angle": 125.433, "splay_distance": 19.002, "splay_ratio": 0.889, "d22": null, "d64": null, "eta": -28.413, "theta": 93.638, "eta_prime": -40.190, "theta_prime": 57.818, "eta_base": -122.562, "theta_base": 8.203, "v0": 3.217, "v1": -22.782, "v2": 32.509, "v3": -31.565, "v4": 17.915, "amplitude": 33.392, "phase_angle": 13.208, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "6d", "suiteness": 0.415, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 156.265, 128.887, 206.051 ], "x_axis": [ 0.479, -0.120, 0.870 ], "y_axis": [ 0.743, -0.472, -0.475 ], "z_axis": [ 0.468, 0.873, -0.137 ], "quaternion": [ -0.466, 0.723, 0.215, 0.463 ] } }, { "index": 2560, "index_chain": 2560, "chain_name": "A", "nt_resnum": 2807, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2807", "linked_nts": [ "///A/2806", "///A/2808" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": 173.198, "beta": -177.512, "gamma": -49.482, "delta": 151.972, "epsilon": -91.642, "zeta": -117.233, "epsilon_zeta": 25.591, "bb_type": "--", "chi": -123.982, "glyco_bond": "anti", "C5prime_xyz": [ -1.572, 8.496, -0.888 ], "P_xyz": [ -0.683, 10.901, -0.381 ], "form": ".", "ssZp": 0.597, "Dp": 0.727, "splay_angle": 140.310, "splay_distance": 19.642, "splay_ratio": 0.941, "d22": null, "d64": null, "eta": 36.965, "theta": -68.992, "eta_prime": 51.608, "theta_prime": -87.072, "eta_base": 86.782, "theta_base": -72.109, "v0": -17.092, "v1": 33.586, "v2": -36.350, "v3": 27.369, "v4": -6.667, "amplitude": 36.750, "phase_angle": 171.539, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.009, "origin": [ 165.100, 113.855, 198.497 ], "x_axis": [ 0.638, -0.020, 0.770 ], "y_axis": [ -0.164, 0.973, 0.162 ], "z_axis": [ -0.753, -0.229, 0.617 ], "quaternion": [ 0.898, 0.109, -0.424, 0.040 ] } }, { "index": 2561, "index_chain": 2561, "chain_name": "A", "nt_resnum": 2808, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2808", "linked_nts": [ "///A/2807", "///A/2809" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,cap-donor,phosphate,splayed-apart", "alpha": 99.982, "beta": 146.004, "gamma": -48.039, "delta": 152.599, "epsilon": -89.640, "zeta": 73.338, "epsilon_zeta": 197.021, "bb_type": "--", "chi": -130.461, "glyco_bond": "anti", "C5prime_xyz": [ -1.819, 8.594, -0.591 ], "P_xyz": [ -1.091, 10.608, 0.917 ], "form": ".", "ssZp": 0.639, "Dp": 0.602, "splay_angle": 151.019, "splay_distance": 18.296, "splay_ratio": 0.968, "d22": null, "d64": null, "eta": -148.187, "theta": 90.286, "eta_prime": -105.624, "theta_prime": 46.388, "eta_base": -105.069, "theta_base": -8.515, "v0": -20.557, "v1": 36.936, "v2": -38.222, "v3": 27.293, "v4": -4.428, "amplitude": 39.128, "phase_angle": 167.643, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.098, "frame": { "rmsd": 0.011, "origin": [ 152.071, 128.509, 199.639 ], "x_axis": [ 0.612, 0.508, 0.606 ], "y_axis": [ 0.749, -0.618, -0.239 ], "z_axis": [ 0.253, 0.600, -0.759 ], "quaternion": [ -0.243, 0.864, 0.364, 0.248 ] } }, { "index": 2562, "index_chain": 2562, "chain_name": "A", "nt_resnum": 2809, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2809", "linked_nts": [ "///A/2808", "///A/2810" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,internal-loop,splayed-apart", "alpha": 130.019, "beta": 147.537, "gamma": 38.939, "delta": 147.684, "epsilon": -95.319, "zeta": -63.030, "epsilon_zeta": -32.289, "bb_type": "--", "chi": -112.544, "glyco_bond": "anti", "C5prime_xyz": [ -1.965, 8.392, -1.560 ], "P_xyz": [ 0.567, 8.872, -1.086 ], "form": ".", "ssZp": 0.705, "Dp": 0.847, "splay_angle": 113.087, "splay_distance": 16.216, "splay_ratio": 0.835, "d22": null, "d64": null, "eta": 21.763, "theta": -33.934, "eta_prime": 51.347, "theta_prime": -55.566, "eta_base": 91.323, "theta_base": -21.331, "v0": -20.787, "v1": 35.177, "v2": -35.312, "v3": 24.243, "v4": -2.367, "amplitude": 36.577, "phase_angle": 164.885, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 160.472, 115.706, 189.625 ], "x_axis": [ 0.203, 0.785, -0.585 ], "y_axis": [ -0.601, 0.572, 0.558 ], "z_axis": [ 0.773, 0.239, 0.588 ], "quaternion": [ 0.769, 0.104, 0.442, 0.451 ] } }, { "index": 2563, "index_chain": 2563, "chain_name": "A", "nt_resnum": 2810, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2810", "linked_nts": [ "///A/2809", "///A/2811" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor,splayed-apart", "alpha": -73.703, "beta": -178.117, "gamma": 67.997, "delta": 83.818, "epsilon": -137.718, "zeta": 116.665, "epsilon_zeta": 105.616, "bb_type": "--", "chi": -146.858, "glyco_bond": "anti", "C5prime_xyz": [ -1.428, 8.722, -0.263 ], "P_xyz": [ 1.132, 9.125, -0.627 ], "form": ".", "ssZp": 3.871, "Dp": 4.619, "splay_angle": 148.252, "splay_distance": 17.664, "splay_ratio": 0.962, "d22": null, "d64": null, "eta": 162.637, "theta": 54.041, "eta_prime": -152.027, "theta_prime": 59.770, "eta_base": -137.634, "theta_base": 106.464, "v0": 0.844, "v1": -22.225, "v2": 33.888, "v3": -34.374, "v4": 21.165, "amplitude": 35.492, "phase_angle": 17.293, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.594, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 151.977, 124.619, 200.178 ], "x_axis": [ -0.822, -0.286, -0.493 ], "y_axis": [ 0.383, -0.918, -0.106 ], "z_axis": [ -0.422, -0.276, 0.863 ], "quaternion": [ -0.176, -0.241, -0.101, 0.949 ] } }, { "index": 2564, "index_chain": 2564, "chain_name": "A", "nt_resnum": 2811, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2811", "linked_nts": [ "///A/2810", "///A/2812" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart", "alpha": -64.748, "beta": 160.415, "gamma": 47.313, "delta": 80.246, "epsilon": -145.995, "zeta": -59.560, "epsilon_zeta": -86.435, "bb_type": "BI", "chi": 177.132, "glyco_bond": "anti", "C5prime_xyz": [ -1.457, 8.360, 1.811 ], "P_xyz": [ 1.075, 8.498, 2.449 ], "form": "A", "ssZp": 4.686, "Dp": 4.681, "splay_angle": 25.156, "splay_distance": 3.967, "splay_ratio": 0.226, "d22": null, "d64": null, "eta": -167.436, "theta": -130.050, "eta_prime": -149.354, "theta_prime": -129.375, "eta_base": -168.526, "theta_base": -94.032, "v0": 3.396, "v1": -25.833, "v2": 37.251, "v3": -36.262, "v4": 20.729, "amplitude": 38.327, "phase_angle": 13.612, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "9a", "suiteness": 0.881, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 162.447, 112.311, 207.312 ], "x_axis": [ 0.102, 0.842, 0.529 ], "y_axis": [ -0.605, 0.475, -0.639 ], "z_axis": [ -0.789, -0.255, 0.558 ], "quaternion": [ 0.731, -0.131, -0.451, 0.495 ] } }, { "index": 2565, "index_chain": 2565, "chain_name": "A", "nt_resnum": 2812, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2812", "linked_nts": [ "///A/2811", "///A/2813" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -75.312, "beta": -170.631, "gamma": 50.432, "delta": 73.441, "epsilon": 65.825, "zeta": 69.933, "epsilon_zeta": -4.109, "bb_type": "--", "chi": -163.199, "glyco_bond": "anti", "C5prime_xyz": [ -1.291, 8.669, 0.657 ], "P_xyz": [ 1.237, 9.174, 1.094 ], "form": ".", "ssZp": 3.390, "Dp": 3.440, "splay_angle": 23.353, "splay_distance": 4.041, "splay_ratio": 0.206, "d22": null, "d64": null, "eta": -169.911, "theta": -124.309, "eta_prime": -151.076, "theta_prime": -135.014, "eta_base": -100.928, "theta_base": -111.161, "v0": 4.355, "v1": -28.075, "v2": 40.017, "v3": -38.474, "v4": 21.524, "amplitude": 41.007, "phase_angle": 12.617, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.703, "filter_rmsd": 0.043, "frame": { "rmsd": 0.010, "origin": [ 161.143, 112.570, 211.049 ], "x_axis": [ -0.393, 0.918, -0.044 ], "y_axis": [ -0.542, -0.270, -0.796 ], "z_axis": [ -0.743, -0.289, 0.604 ], "quaternion": [ 0.485, -0.261, -0.360, 0.753 ] } }, { "index": 2566, "index_chain": 2566, "chain_name": "A", "nt_resnum": 2813, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2813", "linked_nts": [ "///A/2812", "///A/2814" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 71.902, "beta": -162.082, "gamma": 179.478, "delta": 84.513, "epsilon": -131.567, "zeta": -78.889, "epsilon_zeta": -52.678, "bb_type": "BI", "chi": -167.948, "glyco_bond": "anti", "C5prime_xyz": [ -1.141, 8.575, 1.046 ], "P_xyz": [ 0.464, 10.179, -0.263 ], "form": "A", "ssZp": 4.480, "Dp": 4.638, "splay_angle": 26.619, "splay_distance": 4.255, "splay_ratio": 0.231, "d22": 4.113, "d64": 4.024, "eta": 151.582, "theta": -163.015, "eta_prime": 174.091, "theta_prime": -158.390, "eta_base": -143.777, "theta_base": -128.793, "v0": 3.023, "v1": -23.390, "v2": 33.766, "v3": -32.947, "v4": 18.917, "amplitude": 34.764, "phase_angle": 13.762, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.010, "origin": [ 158.916, 112.190, 214.400 ], "x_axis": [ -0.665, 0.636, -0.390 ], "y_axis": [ -0.261, -0.688, -0.677 ], "z_axis": [ -0.699, -0.349, 0.624 ], "quaternion": [ 0.260, -0.316, -0.297, 0.863 ] } }, { "index": 2567, "index_chain": 2567, "chain_name": "A", "nt_resnum": 2814, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2814", "linked_nts": [ "///A/2813", "///A/2815" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack", "alpha": -58.507, "beta": 171.241, "gamma": 41.767, "delta": 80.201, "epsilon": -153.524, "zeta": -69.731, "epsilon_zeta": -83.793, "bb_type": "BI", "chi": -170.976, "glyco_bond": "anti", "C5prime_xyz": [ -1.569, 8.634, 1.156 ], "P_xyz": [ 0.852, 9.110, 2.020 ], "form": "A", "ssZp": 4.542, "Dp": 4.572, "splay_angle": 22.647, "splay_distance": 3.589, "splay_ratio": 0.200, "d22": 4.234, "d64": 4.333, "eta": 158.556, "theta": -147.033, "eta_prime": 173.917, "theta_prime": -144.316, "eta_base": -143.930, "theta_base": -114.402, "v0": 0.342, "v1": -23.025, "v2": 35.663, "v3": -36.418, "v4": 22.757, "amplitude": 37.513, "phase_angle": 18.068, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.654, "filter_rmsd": 0.099, "frame": { "rmsd": 0.009, "origin": [ 155.684, 112.282, 217.166 ], "x_axis": [ -0.346, 0.274, -0.897 ], "y_axis": [ 0.261, -0.891, -0.372 ], "z_axis": [ -0.901, -0.363, 0.237 ], "quaternion": [ 0.004, -0.572, -0.234, 0.786 ] } }, { "index": 2568, "index_chain": 2568, "chain_name": "A", "nt_resnum": 2815, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2815", "linked_nts": [ "///A/2814", "///A/2816" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.241, "beta": 176.961, "gamma": 48.293, "delta": 80.706, "epsilon": -179.799, "zeta": -86.676, "epsilon_zeta": -93.123, "bb_type": "BI", "chi": -164.848, "glyco_bond": "anti", "C5prime_xyz": [ -1.484, 8.686, 0.821 ], "P_xyz": [ 1.016, 9.155, 1.428 ], "form": "A", "ssZp": 4.326, "Dp": 4.342, "splay_angle": 24.635, "splay_distance": 3.942, "splay_ratio": 0.218, "d22": 4.695, "d64": 5.037, "eta": 166.533, "theta": -148.811, "eta_prime": -176.714, "theta_prime": -152.794, "eta_base": -130.587, "theta_base": -137.245, "v0": 0.736, "v1": -23.161, "v2": 35.595, "v3": -36.186, "v4": 22.315, "amplitude": 37.329, "phase_angle": 17.530, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.930, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 152.185, 112.864, 217.716 ], "x_axis": [ -0.093, -0.269, -0.959 ], "y_axis": [ 0.404, -0.890, 0.211 ], "z_axis": [ -0.910, -0.367, 0.191 ], "quaternion": [ -0.228, -0.634, -0.053, 0.737 ] } }, { "index": 2569, "index_chain": 2569, "chain_name": "A", "nt_resnum": 2816, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2816", "linked_nts": [ "///A/2815", "///A/2817" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper", "alpha": 176.731, "beta": -144.613, "gamma": 154.668, "delta": 80.846, "epsilon": -131.509, "zeta": -75.647, "epsilon_zeta": -55.863, "bb_type": "BI", "chi": 174.928, "glyco_bond": "anti", "C5prime_xyz": [ -1.515, 8.394, 1.934 ], "P_xyz": [ 0.851, 9.313, 1.397 ], "form": "A", "ssZp": 4.509, "Dp": 4.592, "splay_angle": 22.555, "splay_distance": 3.626, "splay_ratio": 0.199, "d22": 4.655, "d64": 4.478, "eta": 171.234, "theta": -144.328, "eta_prime": -178.592, "theta_prime": -146.186, "eta_base": -149.644, "theta_base": -121.330, "v0": -0.285, "v1": -21.792, "v2": 34.471, "v3": -35.630, "v4": 22.637, "amplitude": 36.482, "phase_angle": 19.111, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.088, "filter_rmsd": 0.067, "frame": { "rmsd": 0.009, "origin": [ 148.406, 113.877, 218.192 ], "x_axis": [ 0.137, -0.610, -0.780 ], "y_axis": [ 0.422, -0.677, 0.603 ], "z_axis": [ -0.896, -0.412, 0.165 ], "quaternion": [ -0.395, -0.642, 0.073, 0.653 ] } }, { "index": 2570, "index_chain": 2570, "chain_name": "A", "nt_resnum": 2817, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2817", "linked_nts": [ "///A/2816", "///A/2818" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,A-minor,ribose-zipper", "alpha": -62.758, "beta": -179.840, "gamma": 41.597, "delta": 80.057, "epsilon": -96.423, "zeta": -108.446, "epsilon_zeta": 12.023, "bb_type": "--", "chi": -158.903, "glyco_bond": "anti", "C5prime_xyz": [ -1.341, 8.777, 0.459 ], "P_xyz": [ 1.124, 9.321, 1.086 ], "form": ".", "ssZp": 3.935, "Dp": 4.702, "splay_angle": 24.657, "splay_distance": 4.602, "splay_ratio": 0.224, "d22": 4.675, "d64": 6.090, "eta": 173.671, "theta": -118.601, "eta_prime": -176.685, "theta_prime": -126.554, "eta_base": -142.454, "theta_base": -133.669, "v0": 1.704, "v1": -24.849, "v2": 37.269, "v3": -37.314, "v4": 22.471, "amplitude": 38.802, "phase_angle": 16.157, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.664, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 144.956, 113.401, 217.185 ], "x_axis": [ 0.434, -0.859, -0.271 ], "y_axis": [ 0.217, -0.192, 0.957 ], "z_axis": [ -0.875, -0.474, 0.103 ], "quaternion": [ 0.580, 0.617, -0.260, -0.464 ] } }, { "index": 2571, "index_chain": 2571, "chain_name": "A", "nt_resnum": 2818, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2818", "linked_nts": [ "///A/2817", "///A/2819" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,junction-loop", "alpha": 69.839, "beta": -98.144, "gamma": -121.660, "delta": 79.264, "epsilon": -116.697, "zeta": -143.982, "epsilon_zeta": 27.285, "bb_type": "--", "chi": -173.036, "glyco_bond": "anti", "C5prime_xyz": [ -1.633, 8.706, 1.206 ], "P_xyz": [ -2.154, 10.774, -0.313 ], "form": "A", "ssZp": 4.526, "Dp": 4.658, "splay_angle": 17.204, "splay_distance": 2.828, "splay_ratio": 0.151, "d22": null, "d64": null, "eta": -171.347, "theta": 152.921, "eta_prime": -170.604, "theta_prime": 169.401, "eta_base": -168.186, "theta_base": -178.169, "v0": -2.672, "v1": -21.030, "v2": 35.292, "v3": -37.858, "v4": 25.558, "amplitude": 38.208, "phase_angle": 22.530, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.058, "frame": { "rmsd": 0.008, "origin": [ 140.969, 111.964, 215.390 ], "x_axis": [ 0.453, -0.853, -0.259 ], "y_axis": [ 0.193, -0.190, 0.963 ], "z_axis": [ -0.870, -0.486, 0.078 ], "quaternion": [ 0.579, 0.625, -0.264, -0.451 ] } }, { "index": 2572, "index_chain": 2572, "chain_name": "A", "nt_resnum": 2819, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2819", "linked_nts": [ "///A/2818", "///A/2820" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart", "alpha": 102.021, "beta": -84.818, "gamma": -167.582, "delta": 82.211, "epsilon": -156.916, "zeta": -171.339, "epsilon_zeta": 14.424, "bb_type": "--", "chi": -158.925, "glyco_bond": "anti", "C5prime_xyz": [ -1.841, 8.861, 0.403 ], "P_xyz": [ -1.225, 9.246, -2.107 ], "form": ".", "ssZp": 4.173, "Dp": 4.326, "splay_angle": 103.944, "splay_distance": 15.681, "splay_ratio": 0.789, "d22": null, "d64": null, "eta": -169.378, "theta": 94.211, "eta_prime": -158.399, "theta_prime": 81.150, "eta_base": -145.446, "theta_base": 100.890, "v0": -6.410, "v1": -15.761, "v2": 30.527, "v3": -35.154, "v4": 26.220, "amplitude": 34.894, "phase_angle": 28.974, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.042, "frame": { "rmsd": 0.007, "origin": [ 138.478, 111.498, 214.134 ], "x_axis": [ 0.079, -0.984, -0.158 ], "y_axis": [ -0.363, -0.176, 0.915 ], "z_axis": [ -0.929, -0.015, -0.371 ], "quaternion": [ 0.365, 0.638, -0.528, -0.426 ] } }, { "index": 2573, "index_chain": 2573, "chain_name": "A", "nt_resnum": 2820, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2820", "linked_nts": [ "///A/2819", "///A/2821" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": 47.210, "beta": -119.259, "gamma": -98.056, "delta": 88.761, "epsilon": -135.560, "zeta": -62.525, "epsilon_zeta": -73.036, "bb_type": "BI", "chi": 170.490, "glyco_bond": "anti", "C5prime_xyz": [ -0.882, 7.735, 2.253 ], "P_xyz": [ -0.406, 10.240, 2.787 ], "form": "A", "ssZp": 4.662, "Dp": 4.740, "splay_angle": 24.842, "splay_distance": 3.772, "splay_ratio": 0.219, "d22": 4.498, "d64": 4.279, "eta": -154.144, "theta": -177.158, "eta_prime": -176.235, "theta_prime": -160.026, "eta_base": 172.911, "theta_base": -114.102, "v0": 12.497, "v1": -29.983, "v2": 35.253, "v3": -28.991, "v4": 10.491, "amplitude": 35.266, "phase_angle": 358.417, "puckering": "C2'-exo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.110, "frame": { "rmsd": 0.011, "origin": [ 132.664, 124.322, 221.037 ], "x_axis": [ 0.321, 0.107, -0.941 ], "y_axis": [ 0.166, -0.985, -0.055 ], "z_axis": [ -0.932, -0.139, -0.334 ], "quaternion": [ 0.026, 0.812, 0.084, -0.577 ] } }, { "index": 2574, "index_chain": 2574, "chain_name": "A", "nt_resnum": 2821, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2821", "linked_nts": [ "///A/2820", "///A/2822" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack", "alpha": -73.170, "beta": -168.391, "gamma": 44.476, "delta": 82.531, "epsilon": -171.563, "zeta": -78.641, "epsilon_zeta": -92.922, "bb_type": "BI", "chi": -166.196, "glyco_bond": "anti", "C5prime_xyz": [ -1.080, 8.520, 0.917 ], "P_xyz": [ 1.372, 8.679, 1.823 ], "form": "A", "ssZp": 4.480, "Dp": 4.500, "splay_angle": 21.029, "splay_distance": 3.538, "splay_ratio": 0.195, "d22": 4.094, "d64": 4.689, "eta": 157.067, "theta": -132.094, "eta_prime": 178.182, "theta_prime": -134.383, "eta_base": -129.075, "theta_base": -108.036, "v0": 6.089, "v1": -27.344, "v2": 37.141, "v3": -34.584, "v4": 17.986, "amplitude": 37.658, "phase_angle": 9.504, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.644, "filter_rmsd": 0.103, "frame": { "rmsd": 0.007, "origin": [ 129.835, 125.594, 218.891 ], "x_axis": [ 0.402, -0.598, -0.693 ], "y_axis": [ -0.077, -0.777, 0.625 ], "z_axis": [ -0.912, -0.198, -0.359 ], "quaternion": [ 0.258, 0.797, -0.212, -0.504 ] } }, { "index": 2575, "index_chain": 2575, "chain_name": "A", "nt_resnum": 2822, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2822", "linked_nts": [ "///A/2821", "///A/2823" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,non-stack,canonical,helix,stem,coaxial-stack", "alpha": 159.206, "beta": -140.451, "gamma": 170.463, "delta": 83.251, "epsilon": -101.977, "zeta": -96.336, "epsilon_zeta": -5.641, "bb_type": "--", "chi": 177.141, "glyco_bond": "anti", "C5prime_xyz": [ -1.451, 8.441, 1.817 ], "P_xyz": [ 0.708, 9.633, 0.951 ], "form": ".", "ssZp": 4.450, "Dp": 4.549, "splay_angle": 20.639, "splay_distance": 3.788, "splay_ratio": 0.191, "d22": 4.064, "d64": 4.798, "eta": -178.995, "theta": -128.473, "eta_prime": -164.376, "theta_prime": -140.468, "eta_base": -121.635, "theta_base": -119.245, "v0": -0.044, "v1": -21.135, "v2": 33.093, "v3": -34.040, "v4": 21.467, "amplitude": 34.931, "phase_angle": 18.671, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.630, "filter_rmsd": 0.066, "frame": { "rmsd": 0.008, "origin": [ 128.165, 125.778, 215.778 ], "x_axis": [ 0.228, -0.930, -0.287 ], "y_axis": [ -0.362, -0.355, 0.862 ], "z_axis": [ -0.904, -0.093, -0.417 ], "quaternion": [ 0.338, 0.707, -0.457, -0.421 ] } }, { "index": 2576, "index_chain": 2576, "chain_name": "A", "nt_resnum": 2823, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2823", "linked_nts": [ "///A/2822", "///A/2824" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": 74.203, "beta": -123.179, "gamma": -129.999, "delta": 84.301, "epsilon": -115.895, "zeta": -76.360, "epsilon_zeta": -39.536, "bb_type": "--", "chi": 178.733, "glyco_bond": "anti", "C5prime_xyz": [ -0.953, 8.200, 1.801 ], "P_xyz": [ -0.162, 10.550, 0.979 ], "form": ".", "ssZp": 4.751, "Dp": 4.785, "splay_angle": 28.417, "splay_distance": 4.315, "splay_ratio": 0.246, "d22": null, "d64": null, "eta": 161.925, "theta": -167.202, "eta_prime": 173.765, "theta_prime": -152.670, "eta_base": -142.981, "theta_base": -92.915, "v0": 7.632, "v1": -27.656, "v2": 36.187, "v3": -32.750, "v4": 15.860, "amplitude": 36.445, "phase_angle": 6.821, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.008, "origin": [ 126.481, 125.095, 212.454 ], "x_axis": [ 0.042, -0.988, 0.147 ], "y_axis": [ -0.468, 0.111, 0.877 ], "z_axis": [ -0.883, -0.106, -0.458 ], "quaternion": [ -0.417, -0.589, 0.618, 0.312 ] } }, { "index": 2577, "index_chain": 2577, "chain_name": "A", "nt_resnum": 2824, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2824", "linked_nts": [ "///A/2823", "///A/2825" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": -49.733, "beta": 148.972, "gamma": 47.838, "delta": 78.257, "epsilon": -167.650, "zeta": 30.484, "epsilon_zeta": 161.866, "bb_type": "--", "chi": -179.330, "glyco_bond": "anti", "C5prime_xyz": [ -1.505, 8.413, 1.596 ], "P_xyz": [ 1.101, 8.619, 1.665 ], "form": ".", "ssZp": 4.615, "Dp": 4.588, "splay_angle": 86.869, "splay_distance": 11.609, "splay_ratio": 0.689, "d22": null, "d64": null, "eta": 146.915, "theta": -61.399, "eta_prime": 179.170, "theta_prime": -107.770, "eta_base": -97.342, "theta_base": -164.350, "v0": 4.683, "v1": -27.805, "v2": 39.244, "v3": -37.526, "v4": 20.670, "amplitude": 40.123, "phase_angle": 12.016, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.325, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 123.697, 121.856, 211.841 ], "x_axis": [ -0.319, -0.525, 0.789 ], "y_axis": [ -0.327, 0.843, 0.428 ], "z_axis": [ -0.889, -0.122, -0.441 ], "quaternion": [ 0.520, 0.264, -0.807, -0.095 ] } }, { "index": 2578, "index_chain": 2578, "chain_name": "A", "nt_resnum": 2825, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2825", "linked_nts": [ "///A/2824", "///A/2826" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -111.020, "beta": -110.948, "gamma": 164.169, "delta": 82.045, "epsilon": -137.063, "zeta": -62.051, "epsilon_zeta": -75.012, "bb_type": "BI", "chi": -177.470, "glyco_bond": "anti", "C5prime_xyz": [ -1.217, 8.436, 1.562 ], "P_xyz": [ 0.739, 8.915, -0.116 ], "form": ".", "ssZp": 4.694, "Dp": 4.705, "splay_angle": 50.036, "splay_distance": 7.317, "splay_ratio": 0.423, "d22": null, "d64": null, "eta": -59.904, "theta": -80.889, "eta_prime": -1.420, "theta_prime": -96.092, "eta_base": 14.365, "theta_base": -47.643, "v0": 4.348, "v1": -25.758, "v2": 36.221, "v3": -34.719, "v4": 19.131, "amplitude": 37.033, "phase_angle": 12.024, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.005, "origin": [ 118.279, 123.355, 201.684 ], "x_axis": [ 0.476, 0.794, -0.379 ], "y_axis": [ 0.038, 0.411, 0.911 ], "z_axis": [ 0.879, -0.448, 0.165 ], "quaternion": [ 0.716, 0.474, 0.439, 0.264 ] } }, { "index": 2579, "index_chain": 2579, "chain_name": "A", "nt_resnum": 2826, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2826", "linked_nts": [ "///A/2825", "///A/2827" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop", "alpha": 176.896, "beta": -121.182, "gamma": 119.173, "delta": 79.337, "epsilon": -136.564, "zeta": -81.517, "epsilon_zeta": -55.047, "bb_type": "BI", "chi": -168.855, "glyco_bond": "anti", "C5prime_xyz": [ -1.741, 8.700, 1.011 ], "P_xyz": [ 0.845, 8.666, 0.642 ], "form": ".", "ssZp": 4.520, "Dp": 4.630, "splay_angle": 25.750, "splay_distance": 3.899, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 133.288, "theta": -132.642, "eta_prime": 177.877, "theta_prime": -136.976, "eta_base": -94.920, "theta_base": -84.803, "v0": -1.322, "v1": -21.686, "v2": 35.099, "v3": -36.864, "v4": 24.061, "amplitude": 37.491, "phase_angle": 20.580, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 122.710, 128.380, 204.625 ], "x_axis": [ -0.246, 0.507, 0.826 ], "y_axis": [ -0.230, -0.858, 0.459 ], "z_axis": [ 0.942, -0.077, 0.328 ], "quaternion": [ 0.236, 0.567, 0.122, 0.780 ] } }, { "index": 2580, "index_chain": 2580, "chain_name": "A", "nt_resnum": 2827, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2827", "linked_nts": [ "///A/2826", "///A/2828" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate", "alpha": -56.774, "beta": 156.453, "gamma": 51.471, "delta": 82.991, "epsilon": -127.737, "zeta": -52.818, "epsilon_zeta": -74.919, "bb_type": "--", "chi": -162.930, "glyco_bond": "anti", "C5prime_xyz": [ -0.877, 8.504, 0.731 ], "P_xyz": [ 1.728, 8.269, 0.554 ], "form": ".", "ssZp": 4.477, "Dp": 4.796, "splay_angle": 38.699, "splay_distance": 6.009, "splay_ratio": 0.332, "d22": null, "d64": null, "eta": 164.839, "theta": -106.536, "eta_prime": -178.171, "theta_prime": -101.772, "eta_base": -103.787, "theta_base": -65.459, "v0": 8.106, "v1": -28.871, "v2": 37.622, "v3": -33.925, "v4": 16.330, "amplitude": 37.868, "phase_angle": 6.542, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.761, "filter_rmsd": 0.040, "frame": { "rmsd": 0.009, "origin": [ 124.847, 128.645, 207.876 ], "x_axis": [ -0.322, -0.400, 0.858 ], "y_axis": [ 0.167, -0.916, -0.365 ], "z_axis": [ 0.932, 0.026, 0.361 ], "quaternion": [ -0.176, 0.555, -0.105, 0.806 ] } }, { "index": 2581, "index_chain": 2581, "chain_name": "A", "nt_resnum": 2828, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2828", "linked_nts": [ "///A/2827", "///A/2829" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -66.405, "beta": 152.587, "gamma": 75.687, "delta": 78.232, "epsilon": -152.898, "zeta": -79.892, "epsilon_zeta": -73.006, "bb_type": "BI", "chi": -176.977, "glyco_bond": "anti", "C5prime_xyz": [ -1.449, 8.539, 1.480 ], "P_xyz": [ 1.062, 9.116, 1.002 ], "form": "A", "ssZp": 4.664, "Dp": 4.653, "splay_angle": 27.316, "splay_distance": 4.215, "splay_ratio": 0.241, "d22": null, "d64": null, "eta": 161.610, "theta": -152.897, "eta_prime": -158.985, "theta_prime": -155.744, "eta_base": -84.189, "theta_base": -140.985, "v0": 2.648, "v1": -25.873, "v2": 38.116, "v3": -37.514, "v4": 22.008, "amplitude": 39.424, "phase_angle": 14.803, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.194, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 126.376, 125.269, 212.607 ], "x_axis": [ -0.030, -0.988, 0.149 ], "y_axis": [ 0.405, -0.148, -0.902 ], "z_axis": [ 0.914, 0.034, 0.404 ], "quaternion": [ 0.554, -0.423, 0.345, -0.629 ] } }, { "index": 2582, "index_chain": 2582, "chain_name": "A", "nt_resnum": 2829, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2829", "linked_nts": [ "///A/2828", "///A/2830" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -47.151, "beta": 160.096, "gamma": 62.046, "delta": 80.764, "epsilon": -162.559, "zeta": -77.861, "epsilon_zeta": -84.698, "bb_type": "BI", "chi": -173.987, "glyco_bond": "anti", "C5prime_xyz": [ -1.451, 8.637, 1.330 ], "P_xyz": [ 1.138, 8.981, 1.525 ], "form": "A", "ssZp": 4.460, "Dp": 4.473, "splay_angle": 24.484, "splay_distance": 4.074, "splay_ratio": 0.221, "d22": null, "d64": null, "eta": -178.028, "theta": -128.923, "eta_prime": -161.883, "theta_prime": -139.963, "eta_base": -129.972, "theta_base": -121.642, "v0": 0.002, "v1": -22.025, "v2": 34.507, "v3": -35.461, "v4": 22.385, "amplitude": 36.416, "phase_angle": 18.638, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.624, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 128.476, 125.904, 216.206 ], "x_axis": [ 0.335, -0.927, -0.168 ], "y_axis": [ 0.332, 0.283, -0.900 ], "z_axis": [ 0.882, 0.246, 0.402 ], "quaternion": [ 0.711, -0.403, 0.369, -0.443 ] } }, { "index": 2583, "index_chain": 2583, "chain_name": "A", "nt_resnum": 2830, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2830", "linked_nts": [ "///A/2829", "///A/2831" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 164.633, "beta": -160.247, "gamma": 166.282, "delta": 82.665, "epsilon": -129.641, "zeta": -77.798, "epsilon_zeta": -51.844, "bb_type": "BI", "chi": 172.848, "glyco_bond": "anti", "C5prime_xyz": [ -1.402, 8.111, 2.066 ], "P_xyz": [ 0.579, 9.682, 1.422 ], "form": "A", "ssZp": 4.710, "Dp": 4.726, "splay_angle": 21.172, "splay_distance": 3.334, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": 164.310, "theta": -154.676, "eta_prime": 179.386, "theta_prime": -150.834, "eta_base": -139.238, "theta_base": -119.006, "v0": 4.438, "v1": -25.468, "v2": 35.702, "v3": -34.197, "v4": 18.781, "amplitude": 36.481, "phase_angle": 11.858, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.648, "filter_rmsd": 0.043, "frame": { "rmsd": 0.011, "origin": [ 130.832, 125.421, 219.495 ], "x_axis": [ 0.482, -0.649, -0.589 ], "y_axis": [ 0.093, 0.706, -0.702 ], "z_axis": [ 0.871, 0.283, 0.401 ], "quaternion": [ 0.804, -0.306, 0.454, -0.231 ] } }, { "index": 2584, "index_chain": 2584, "chain_name": "A", "nt_resnum": 2831, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2831", "linked_nts": [ "///A/2830", "///A/2832" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -54.231, "beta": -178.458, "gamma": 37.085, "delta": 83.906, "epsilon": -175.213, "zeta": -87.094, "epsilon_zeta": -88.118, "bb_type": "BI", "chi": -151.509, "glyco_bond": "anti", "C5prime_xyz": [ -1.118, 8.663, 0.065 ], "P_xyz": [ 1.380, 9.086, 0.684 ], "form": "A", "ssZp": 4.140, "Dp": 4.379, "splay_angle": 21.466, "splay_distance": 3.520, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": 164.130, "theta": -143.876, "eta_prime": -179.426, "theta_prime": -151.978, "eta_base": -134.821, "theta_base": -141.316, "v0": 3.000, "v1": -23.536, "v2": 34.011, "v3": -33.263, "v4": 19.123, "amplitude": 35.033, "phase_angle": 13.872, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.459, "filter_rmsd": 0.043, "frame": { "rmsd": 0.010, "origin": [ 133.525, 124.245, 221.070 ], "x_axis": [ 0.378, -0.027, -0.925 ], "y_axis": [ -0.105, 0.992, -0.072 ], "z_axis": [ 0.920, 0.124, 0.372 ], "quaternion": [ 0.828, -0.059, 0.557, 0.024 ] } }, { "index": 2585, "index_chain": 2585, "chain_name": "A", "nt_resnum": 2832, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2832", "linked_nts": [ "///A/2831", "///A/2833" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": 154.988, "beta": -146.302, "gamma": 163.162, "delta": 80.530, "epsilon": -129.747, "zeta": -62.773, "epsilon_zeta": -66.974, "bb_type": "BI", "chi": 176.931, "glyco_bond": "anti", "C5prime_xyz": [ -1.378, 8.271, 1.843 ], "P_xyz": [ 0.641, 9.561, 0.795 ], "form": ".", "ssZp": 4.770, "Dp": 4.778, "splay_angle": 26.500, "splay_distance": 4.424, "splay_ratio": 0.243, "d22": null, "d64": null, "eta": 157.584, "theta": -135.090, "eta_prime": 170.774, "theta_prime": -137.262, "eta_base": -159.574, "theta_base": -105.376, "v0": 6.263, "v1": -28.407, "v2": 38.635, "v3": -36.040, "v4": 18.778, "amplitude": 39.186, "phase_angle": 9.617, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.427, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 136.292, 122.879, 222.763 ], "x_axis": [ 0.267, 0.297, -0.917 ], "y_axis": [ -0.187, 0.949, 0.252 ], "z_axis": [ 0.945, 0.104, 0.309 ], "quaternion": [ 0.795, 0.047, 0.586, 0.152 ] } }, { "index": 2586, "index_chain": 2586, "chain_name": "A", "nt_resnum": 2833, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2833", "linked_nts": [ "///A/2832", "///A/2834" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -61.689, "beta": 176.591, "gamma": 53.721, "delta": 76.822, "epsilon": -169.764, "zeta": -85.151, "epsilon_zeta": -84.613, "bb_type": "BI", "chi": -165.037, "glyco_bond": "anti", "C5prime_xyz": [ -1.840, 8.799, 0.749 ], "P_xyz": [ 0.555, 9.772, 1.139 ], "form": ".", "ssZp": 4.443, "Dp": 4.450, "splay_angle": 36.044, "splay_distance": 5.532, "splay_ratio": 0.311, "d22": null, "d64": null, "eta": 163.628, "theta": -177.521, "eta_prime": -172.966, "theta_prime": -176.737, "eta_base": -116.798, "theta_base": -163.328, "v0": -3.087, "v1": -21.207, "v2": 36.018, "v3": -38.820, "v4": 26.418, "amplitude": 39.136, "phase_angle": 23.028, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.761, "filter_rmsd": 0.097, "frame": { "rmsd": 0.010, "origin": [ 140.210, 122.508, 220.741 ], "x_axis": [ 0.055, 0.852, -0.521 ], "y_axis": [ -0.259, 0.516, 0.817 ], "z_axis": [ 0.964, 0.090, 0.249 ], "quaternion": [ 0.674, 0.270, 0.550, 0.412 ] } }, { "index": 2587, "index_chain": 2587, "chain_name": "A", "nt_resnum": 2834, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2834", "linked_nts": [ "///A/2833", "///A/2835" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,A-minor,ribose-zipper,phosphate", "alpha": -61.255, "beta": 170.222, "gamma": 65.171, "delta": 81.814, "epsilon": -119.464, "zeta": -81.899, "epsilon_zeta": -37.565, "bb_type": "--", "chi": 168.772, "glyco_bond": "anti", "C5prime_xyz": [ -2.032, 8.224, 2.154 ], "P_xyz": [ 0.330, 8.597, 3.221 ], "form": ".", "ssZp": 4.451, "Dp": 4.553, "splay_angle": 22.568, "splay_distance": 3.478, "splay_ratio": 0.196, "d22": null, "d64": null, "eta": -170.170, "theta": -131.279, "eta_prime": -170.746, "theta_prime": -129.402, "eta_base": -159.230, "theta_base": -80.263, "v0": -2.834, "v1": -19.356, "v2": 32.847, "v3": -35.418, "v4": 24.108, "amplitude": 35.696, "phase_angle": 23.045, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.538, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 144.775, 119.391, 220.959 ], "x_axis": [ -0.197, 0.873, -0.445 ], "y_axis": [ -0.548, 0.279, 0.789 ], "z_axis": [ 0.813, 0.399, 0.424 ], "quaternion": [ 0.614, 0.159, 0.513, 0.579 ] } }, { "index": 2588, "index_chain": 2588, "chain_name": "A", "nt_resnum": 2835, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2835", "linked_nts": [ "///A/2834", "///A/2836" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor,ribose-zipper", "alpha": -68.573, "beta": 160.206, "gamma": 53.533, "delta": 83.791, "epsilon": -118.657, "zeta": -67.588, "epsilon_zeta": -51.069, "bb_type": "--", "chi": -170.320, "glyco_bond": "anti", "C5prime_xyz": [ -1.446, 8.550, 1.122 ], "P_xyz": [ 1.145, 8.801, 1.364 ], "form": ".", "ssZp": 4.515, "Dp": 4.689, "splay_angle": 41.467, "splay_distance": 6.609, "splay_ratio": 0.355, "d22": null, "d64": null, "eta": 158.725, "theta": -110.518, "eta_prime": 176.136, "theta_prime": -104.063, "eta_base": -118.897, "theta_base": -68.799, "v0": 1.603, "v1": -22.880, "v2": 34.194, "v3": -34.219, "v4": 20.577, "amplitude": 35.584, "phase_angle": 16.069, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.508, "filter_rmsd": 0.040, "frame": { "rmsd": 0.012, "origin": [ 147.221, 121.848, 221.229 ], "x_axis": [ -0.584, 0.752, 0.307 ], "y_axis": [ -0.191, -0.495, 0.848 ], "z_axis": [ 0.789, 0.436, 0.433 ], "quaternion": [ 0.297, 0.346, 0.405, 0.792 ] } }, { "index": 2589, "index_chain": 2589, "chain_name": "A", "nt_resnum": 2836, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2836", "linked_nts": [ "///A/2835", "///A/2837" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -51.122, "beta": 153.020, "gamma": 65.670, "delta": 78.210, "epsilon": -155.992, "zeta": -68.850, "epsilon_zeta": -87.142, "bb_type": "BI", "chi": -165.195, "glyco_bond": "anti", "C5prime_xyz": [ -1.903, 8.818, 0.772 ], "P_xyz": [ 0.587, 9.528, 0.380 ], "form": "A", "ssZp": 4.462, "Dp": 4.533, "splay_angle": 22.515, "splay_distance": 3.715, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 165.665, "theta": -146.803, "eta_prime": -158.744, "theta_prime": -151.840, "eta_base": -95.428, "theta_base": -129.664, "v0": -2.194, "v1": -21.803, "v2": 36.172, "v3": -38.375, "v4": 25.521, "amplitude": 38.929, "phase_angle": 21.693, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.360, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 147.635, 126.441, 225.964 ], "x_axis": [ -0.474, -0.019, 0.880 ], "y_axis": [ 0.372, -0.910, 0.180 ], "z_axis": [ 0.798, 0.413, 0.439 ], "quaternion": [ -0.116, 0.499, 0.177, 0.840 ] } }, { "index": 2590, "index_chain": 2590, "chain_name": "A", "nt_resnum": 2837, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2837", "linked_nts": [ "///A/2836", "///A/2838" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -68.392, "beta": 168.240, "gamma": 65.372, "delta": 76.802, "epsilon": -152.175, "zeta": -73.008, "epsilon_zeta": -79.167, "bb_type": "BI", "chi": -168.590, "glyco_bond": "anti", "C5prime_xyz": [ -1.850, 8.750, 0.954 ], "P_xyz": [ 0.613, 9.619, 0.990 ], "form": "A", "ssZp": 4.557, "Dp": 4.589, "splay_angle": 26.238, "splay_distance": 4.144, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": 170.314, "theta": -152.112, "eta_prime": -175.788, "theta_prime": -152.101, "eta_base": -135.340, "theta_base": -123.752, "v0": -2.768, "v1": -21.581, "v2": 36.333, "v3": -38.920, "v4": 26.277, "amplitude": 39.335, "phase_angle": 22.528, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.711, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 148.997, 129.390, 227.767 ], "x_axis": [ -0.208, -0.458, 0.864 ], "y_axis": [ 0.588, -0.764, -0.264 ], "z_axis": [ 0.781, 0.453, 0.429 ], "quaternion": [ -0.338, 0.531, 0.061, 0.775 ] } }, { "index": 2591, "index_chain": 2591, "chain_name": "A", "nt_resnum": 2838, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2838", "linked_nts": [ "///A/2837", "///A/2839" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.464, "beta": 162.927, "gamma": 67.494, "delta": 79.133, "epsilon": -154.147, "zeta": -72.642, "epsilon_zeta": -81.505, "bb_type": "BI", "chi": -175.992, "glyco_bond": "anti", "C5prime_xyz": [ -1.645, 8.564, 1.422 ], "P_xyz": [ 0.892, 9.182, 1.502 ], "form": "A", "ssZp": 4.603, "Dp": 4.594, "splay_angle": 29.745, "splay_distance": 4.547, "splay_ratio": 0.259, "d22": 4.609, "d64": 5.138, "eta": 171.839, "theta": -150.243, "eta_prime": -172.336, "theta_prime": -150.663, "eta_base": -126.807, "theta_base": -125.496, "v0": 0.136, "v1": -23.451, "v2": 36.505, "v3": -37.407, "v4": 23.506, "amplitude": 38.467, "phase_angle": 18.378, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.629, "filter_rmsd": 0.100, "frame": { "rmsd": 0.007, "origin": [ 150.710, 131.848, 230.630 ], "x_axis": [ 0.171, -0.784, 0.596 ], "y_axis": [ 0.550, -0.426, -0.718 ], "z_axis": [ 0.817, 0.451, 0.359 ], "quaternion": [ 0.525, -0.556, 0.105, -0.635 ] } }, { "index": 2592, "index_chain": 2592, "chain_name": "A", "nt_resnum": 2839, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2839", "linked_nts": [ "///A/2838", "///A/2840" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -66.922, "beta": 175.067, "gamma": 61.911, "delta": 81.487, "epsilon": -123.376, "zeta": -63.127, "epsilon_zeta": -60.249, "bb_type": "--", "chi": 179.527, "glyco_bond": "anti", "C5prime_xyz": [ -1.475, 8.464, 1.675 ], "P_xyz": [ 1.045, 8.727, 2.337 ], "form": ".", "ssZp": 4.692, "Dp": 4.714, "splay_angle": 38.171, "splay_distance": 5.818, "splay_ratio": 0.327, "d22": 3.543, "d64": 3.700, "eta": -178.793, "theta": -115.213, "eta_prime": -169.235, "theta_prime": -111.477, "eta_base": -132.598, "theta_base": -62.840, "v0": 1.885, "v1": -24.003, "v2": 35.721, "v3": -35.580, "v4": 21.259, "amplitude": 37.109, "phase_angle": 15.724, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.854, "filter_rmsd": 0.062, "frame": { "rmsd": 0.008, "origin": [ 152.992, 134.186, 233.793 ], "x_axis": [ 0.415, -0.905, 0.095 ], "y_axis": [ 0.198, -0.012, -0.980 ], "z_axis": [ 0.888, 0.425, 0.174 ], "quaternion": [ 0.628, -0.560, 0.316, -0.439 ] } }, { "index": 2593, "index_chain": 2593, "chain_name": "A", "nt_resnum": 2840, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2840", "linked_nts": [ "///A/2839", "///A/2841" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -67.648, "beta": 173.536, "gamma": 52.814, "delta": 82.943, "epsilon": -152.950, "zeta": -67.971, "epsilon_zeta": -84.979, "bb_type": "BI", "chi": -175.830, "glyco_bond": "anti", "C5prime_xyz": [ -1.237, 8.508, 1.463 ], "P_xyz": [ 1.271, 8.622, 2.201 ], "form": "A", "ssZp": 4.569, "Dp": 4.573, "splay_angle": 24.651, "splay_distance": 3.840, "splay_ratio": 0.216, "d22": 4.396, "d64": 4.727, "eta": 156.568, "theta": -142.388, "eta_prime": -175.898, "theta_prime": -141.140, "eta_base": -101.722, "theta_base": -115.692, "v0": 1.736, "v1": -23.102, "v2": 34.467, "v3": -34.377, "v4": 20.600, "amplitude": 35.831, "phase_angle": 15.861, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.634, "filter_rmsd": 0.061, "frame": { "rmsd": 0.009, "origin": [ 158.507, 132.368, 233.449 ], "x_axis": [ 0.062, -0.507, -0.860 ], "y_axis": [ -0.412, 0.771, -0.485 ], "z_axis": [ 0.909, 0.385, -0.161 ], "quaternion": [ 0.647, -0.336, 0.684, -0.037 ] } }, { "index": 2594, "index_chain": 2594, "chain_name": "A", "nt_resnum": 2841, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2841", "linked_nts": [ "///A/2840", "///A/2842" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate", "alpha": -69.368, "beta": 174.111, "gamma": 58.835, "delta": 81.457, "epsilon": -153.531, "zeta": -70.101, "epsilon_zeta": -83.430, "bb_type": "BI", "chi": -172.783, "glyco_bond": "anti", "C5prime_xyz": [ -1.432, 8.606, 1.266 ], "P_xyz": [ 1.111, 8.950, 1.730 ], "form": ".", "ssZp": 4.578, "Dp": 4.586, "splay_angle": 25.914, "splay_distance": 4.167, "splay_ratio": 0.230, "d22": 4.948, "d64": 4.816, "eta": 168.592, "theta": -146.324, "eta_prime": -174.999, "theta_prime": -145.446, "eta_base": -131.503, "theta_base": -134.116, "v0": 1.289, "v1": -23.742, "v2": 35.874, "v3": -36.147, "v4": 21.953, "amplitude": 37.449, "phase_angle": 16.674, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.929, "filter_rmsd": 0.060, "frame": { "rmsd": 0.007, "origin": [ 162.334, 132.051, 233.382 ], "x_axis": [ -0.124, 0.015, -0.992 ], "y_axis": [ -0.438, 0.896, 0.069 ], "z_axis": [ 0.890, 0.443, -0.105 ], "quaternion": [ 0.646, -0.145, 0.729, 0.176 ] } }, { "index": 2595, "index_chain": 2595, "chain_name": "A", "nt_resnum": 2842, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2842", "linked_nts": [ "///A/2841", "///A/2843" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -78.736, "beta": -159.015, "gamma": 45.709, "delta": 82.157, "epsilon": -162.751, "zeta": -31.559, "epsilon_zeta": -131.192, "bb_type": "BI", "chi": -161.296, "glyco_bond": "anti", "C5prime_xyz": [ -1.334, 8.749, 0.599 ], "P_xyz": [ 0.902, 9.315, 1.819 ], "form": ".", "ssZp": 4.284, "Dp": 4.440, "splay_angle": 24.423, "splay_distance": 4.475, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 166.594, "theta": -120.892, "eta_prime": 172.681, "theta_prime": -127.989, "eta_base": -166.039, "theta_base": -108.601, "v0": 0.745, "v1": -22.808, "v2": 34.922, "v3": -35.427, "v4": 21.912, "amplitude": 36.607, "phase_angle": 17.450, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.581, "filter_rmsd": 0.103, "frame": { "rmsd": 0.008, "origin": [ 166.422, 131.317, 233.062 ], "x_axis": [ -0.663, 0.229, -0.712 ], "y_axis": [ -0.325, 0.769, 0.550 ], "z_axis": [ 0.674, 0.596, -0.436 ], "quaternion": [ 0.409, -0.028, 0.847, 0.338 ] } }, { "index": 2596, "index_chain": 2596, "chain_name": "A", "nt_resnum": 2843, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2843", "linked_nts": [ "///A/2842", "///A/2844" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -158.634, "beta": 144.241, "gamma": 154.715, "delta": 82.891, "epsilon": -149.172, "zeta": -76.079, "epsilon_zeta": -73.092, "bb_type": "BI", "chi": 179.832, "glyco_bond": "anti", "C5prime_xyz": [ -1.643, 8.521, 1.645 ], "P_xyz": [ -0.488, 10.639, 0.613 ], "form": "A", "ssZp": 4.423, "Dp": 4.492, "splay_angle": 23.437, "splay_distance": 3.691, "splay_ratio": 0.205, "d22": null, "d64": null, "eta": 174.186, "theta": 175.426, "eta_prime": -170.724, "theta_prime": -167.747, "eta_base": -133.401, "theta_base": -137.994, "v0": -1.404, "v1": -20.123, "v2": 32.664, "v3": -34.405, "v4": 22.647, "amplitude": 34.958, "phase_angle": 20.872, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.044, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 168.449, 132.011, 229.133 ], "x_axis": [ -0.770, 0.513, -0.380 ], "y_axis": [ 0.007, 0.601, 0.799 ], "z_axis": [ 0.638, 0.612, -0.466 ], "quaternion": [ 0.302, 0.154, 0.842, 0.419 ] } }, { "index": 2597, "index_chain": 2597, "chain_name": "A", "nt_resnum": 2844, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2844", "linked_nts": [ "///A/2843", "///A/2845" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -54.053, "beta": 173.251, "gamma": 65.699, "delta": 147.315, "epsilon": -126.398, "zeta": -162.142, "epsilon_zeta": 35.744, "bb_type": "--", "chi": -138.594, "glyco_bond": "anti", "C5prime_xyz": [ -1.810, 8.730, -0.208 ], "P_xyz": [ 0.585, 9.213, 0.721 ], "form": ".", "ssZp": 1.427, "Dp": 1.488, "splay_angle": 75.325, "splay_distance": 10.381, "splay_ratio": 0.628, "d22": null, "d64": null, "eta": -166.594, "theta": -133.392, "eta_prime": -134.496, "theta_prime": 178.099, "eta_base": -107.609, "theta_base": 106.374, "v0": -23.054, "v1": 37.166, "v2": -36.356, "v3": 23.922, "v4": -0.767, "amplitude": 38.145, "phase_angle": 162.383, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1b", "suiteness": 0.871, "filter_rmsd": 0.044, "frame": { "rmsd": 0.012, "origin": [ 170.278, 133.081, 226.111 ], "x_axis": [ -0.640, 0.760, 0.114 ], "y_axis": [ 0.456, 0.256, 0.852 ], "z_axis": [ 0.618, 0.598, -0.511 ], "quaternion": [ 0.162, 0.392, 0.776, 0.467 ] } }, { "index": 2598, "index_chain": 2598, "chain_name": "A", "nt_resnum": 2845, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2845", "linked_nts": [ "///A/2844", "///A/2846" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-stack,hairpin-loop,cap-acceptor", "alpha": 144.666, "beta": -143.529, "gamma": 57.628, "delta": 146.322, "epsilon": -121.876, "zeta": -86.305, "epsilon_zeta": -35.571, "bb_type": "--", "chi": 69.080, "glyco_bond": "syn", "C5prime_xyz": [ -5.360, 4.505, 1.635 ], "P_xyz": [ -6.297, 2.221, 0.777 ], "form": ".", "ssZp": -1.447, "Dp": 1.429, "splay_angle": 79.588, "splay_distance": 12.056, "splay_ratio": 0.642, "d22": null, "d64": null, "eta": 68.017, "theta": -82.895, "eta_prime": 86.764, "theta_prime": -92.849, "eta_base": 60.112, "theta_base": -65.652, "v0": -26.507, "v1": 39.658, "v2": -36.879, "v3": 22.571, "v4": 2.249, "amplitude": 39.773, "phase_angle": 158.006, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.008, "origin": [ 174.428, 126.083, 232.559 ], "x_axis": [ -0.396, -0.918, -0.028 ], "y_axis": [ 0.425, -0.156, -0.892 ], "z_axis": [ 0.814, -0.365, 0.452 ], "quaternion": [ -0.474, 0.278, -0.444, 0.708 ] } }, { "index": 2599, "index_chain": 2599, "chain_name": "A", "nt_resnum": 2846, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2846", "linked_nts": [ "///A/2845", "///A/2847" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate", "alpha": -79.196, "beta": -170.817, "gamma": 56.691, "delta": 84.441, "epsilon": -144.962, "zeta": -68.790, "epsilon_zeta": -76.172, "bb_type": "BI", "chi": -167.344, "glyco_bond": "anti", "C5prime_xyz": [ -1.080, 8.474, 0.977 ], "P_xyz": [ 1.474, 8.532, 1.557 ], "form": "A", "ssZp": 4.590, "Dp": 4.684, "splay_angle": 26.059, "splay_distance": 4.018, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 168.626, "theta": -135.561, "eta_prime": -159.389, "theta_prime": -131.963, "eta_base": -144.900, "theta_base": -97.206, "v0": 6.072, "v1": -26.539, "v2": 35.761, "v3": -33.234, "v4": 17.155, "amplitude": 36.224, "phase_angle": 9.176, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "2a", "suiteness": 0.619, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 173.399, 136.949, 227.439 ], "x_axis": [ 0.674, 0.060, 0.736 ], "y_axis": [ 0.422, -0.849, -0.317 ], "z_axis": [ 0.606, 0.525, -0.598 ], "quaternion": [ -0.238, 0.883, 0.137, 0.380 ] } }, { "index": 2600, "index_chain": 2600, "chain_name": "A", "nt_resnum": 2847, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2847", "linked_nts": [ "///A/2846", "///A/2848" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -63.922, "beta": 164.435, "gamma": 62.549, "delta": 83.191, "epsilon": -168.722, "zeta": -85.186, "epsilon_zeta": -83.535, "bb_type": "BI", "chi": -170.331, "glyco_bond": "anti", "C5prime_xyz": [ -1.394, 8.614, 1.132 ], "P_xyz": [ 1.205, 8.907, 1.203 ], "form": ".", "ssZp": 4.429, "Dp": 4.444, "splay_angle": 124.971, "splay_distance": 15.479, "splay_ratio": 0.887, "d22": null, "d64": null, "eta": 166.346, "theta": -140.622, "eta_prime": -168.937, "theta_prime": 177.940, "eta_base": -111.627, "theta_base": 138.689, "v0": 2.047, "v1": -23.609, "v2": 34.946, "v3": -34.725, "v4": 20.597, "amplitude": 36.251, "phase_angle": 15.420, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.822, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 176.420, 139.574, 227.082 ], "x_axis": [ 0.777, -0.508, 0.372 ], "y_axis": [ -0.109, -0.691, -0.715 ], "z_axis": [ 0.620, 0.515, -0.592 ], "quaternion": [ -0.351, 0.875, -0.176, 0.284 ] } }, { "index": 2601, "index_chain": 2601, "chain_name": "A", "nt_resnum": 2848, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2848", "linked_nts": [ "///A/2847", "///A/2849" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,phosphate,splayed-apart", "alpha": 128.838, "beta": 151.617, "gamma": 59.183, "delta": 84.081, "epsilon": -131.017, "zeta": -72.452, "epsilon_zeta": -58.565, "bb_type": "BI", "chi": -178.120, "glyco_bond": "anti", "C5prime_xyz": [ -1.564, 8.435, 1.561 ], "P_xyz": [ 1.029, 8.640, 1.790 ], "form": ".", "ssZp": 4.575, "Dp": 4.615, "splay_angle": 26.189, "splay_distance": 4.060, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": -8.875, "theta": -125.935, "eta_prime": 4.676, "theta_prime": -126.279, "eta_base": -4.110, "theta_base": -82.796, "v0": 0.718, "v1": -21.718, "v2": 33.175, "v3": -33.723, "v4": 20.843, "amplitude": 34.778, "phase_angle": 17.468, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.062, "filter_rmsd": 0.041, "frame": { "rmsd": 0.010, "origin": [ 169.263, 143.500, 213.930 ], "x_axis": [ 0.117, -0.769, -0.629 ], "y_axis": [ 0.833, -0.269, 0.484 ], "z_axis": [ -0.541, -0.580, 0.609 ], "quaternion": [ 0.604, 0.441, 0.036, -0.663 ] } }, { "index": 2602, "index_chain": 2602, "chain_name": "A", "nt_resnum": 2849, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2849", "linked_nts": [ "///A/2848", "///A/2850" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate", "alpha": -67.095, "beta": 167.754, "gamma": 54.396, "delta": 83.551, "epsilon": -156.762, "zeta": -59.814, "epsilon_zeta": -96.948, "bb_type": "BI", "chi": -162.059, "glyco_bond": "anti", "C5prime_xyz": [ -1.373, 8.655, 0.661 ], "P_xyz": [ 1.221, 8.952, 0.808 ], "form": ".", "ssZp": 4.407, "Dp": 4.535, "splay_angle": 50.845, "splay_distance": 6.908, "splay_ratio": 0.450, "d22": null, "d64": null, "eta": 157.570, "theta": -104.683, "eta_prime": -178.927, "theta_prime": -115.986, "eta_base": -111.649, "theta_base": -46.159, "v0": 2.925, "v1": -24.255, "v2": 35.180, "v3": -34.438, "v4": 19.889, "amplitude": 36.269, "phase_angle": 14.075, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.808, "filter_rmsd": 0.103, "frame": { "rmsd": 0.007, "origin": [ 167.642, 139.816, 214.461 ], "x_axis": [ 0.746, -0.664, -0.057 ], "y_axis": [ 0.409, 0.389, 0.826 ], "z_axis": [ -0.526, -0.639, 0.561 ], "quaternion": [ 0.821, 0.446, -0.143, -0.327 ] } }, { "index": 2603, "index_chain": 2603, "chain_name": "A", "nt_resnum": 2850, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2850", "linked_nts": [ "///A/2849", "///A/2851" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor,phosphate", "alpha": 148.109, "beta": -162.586, "gamma": 174.494, "delta": 79.118, "epsilon": -115.576, "zeta": -47.536, "epsilon_zeta": -68.040, "bb_type": "--", "chi": 4.213, "glyco_bond": "syn", "C5prime_xyz": [ -4.931, 3.482, -1.646 ], "P_xyz": [ -6.319, 1.547, -0.565 ], "form": ".", "ssZp": -4.835, "Dp": 4.852, "splay_angle": 29.918, "splay_distance": 4.597, "splay_ratio": 0.269, "d22": null, "d64": null, "eta": 155.109, "theta": -124.240, "eta_prime": 179.685, "theta_prime": -114.912, "eta_base": -75.954, "theta_base": -128.060, "v0": 7.300, "v1": -29.975, "v2": 40.145, "v3": -36.933, "v4": 18.686, "amplitude": 40.585, "phase_angle": 8.445, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.859, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 170.273, 137.685, 220.483 ], "x_axis": [ 0.488, -0.716, -0.500 ], "y_axis": [ -0.718, -0.003, -0.696 ], "z_axis": [ 0.497, 0.698, -0.516 ], "quaternion": [ -0.492, 0.708, -0.506, -0.001 ] } }, { "index": 2604, "index_chain": 2604, "chain_name": "A", "nt_resnum": 2851, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2851", "linked_nts": [ "///A/2850", "///A/2852" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-donor", "alpha": -75.882, "beta": 160.346, "gamma": 82.518, "delta": 79.658, "epsilon": -137.159, "zeta": -65.260, "epsilon_zeta": -71.899, "bb_type": "BI", "chi": 170.930, "glyco_bond": "anti", "C5prime_xyz": [ -1.763, 8.192, 2.099 ], "P_xyz": [ 0.748, 8.926, 2.158 ], "form": "A", "ssZp": 4.665, "Dp": 4.701, "splay_angle": 27.893, "splay_distance": 4.281, "splay_ratio": 0.247, "d22": null, "d64": null, "eta": 163.419, "theta": -131.900, "eta_prime": -157.388, "theta_prime": -132.774, "eta_base": -137.047, "theta_base": -91.707, "v0": 1.318, "v1": -24.286, "v2": 36.724, "v3": -36.922, "v4": 22.452, "amplitude": 38.328, "phase_angle": 16.635, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.010, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 171.045, 133.687, 222.617 ], "x_axis": [ 0.002, 0.640, 0.768 ], "y_axis": [ -0.821, 0.440, -0.365 ], "z_axis": [ -0.571, -0.630, 0.526 ], "quaternion": [ 0.701, 0.094, -0.477, 0.521 ] } }, { "index": 2605, "index_chain": 2605, "chain_name": "A", "nt_resnum": 2852, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2852", "linked_nts": [ "///A/2851", "///A/2853" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -69.938, "beta": -176.583, "gamma": 49.690, "delta": 81.236, "epsilon": -150.685, "zeta": -69.292, "epsilon_zeta": -81.393, "bb_type": "BI", "chi": -168.986, "glyco_bond": "anti", "C5prime_xyz": [ -1.277, 8.568, 1.064 ], "P_xyz": [ 1.216, 8.886, 1.790 ], "form": "A", "ssZp": 4.594, "Dp": 4.642, "splay_angle": 23.892, "splay_distance": 3.710, "splay_ratio": 0.209, "d22": 4.143, "d64": 4.352, "eta": 162.165, "theta": -144.913, "eta_prime": -179.419, "theta_prime": -141.908, "eta_base": -116.113, "theta_base": -109.870, "v0": 4.046, "v1": -26.073, "v2": 36.977, "v3": -35.621, "v4": 19.925, "amplitude": 37.889, "phase_angle": 12.594, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.878, "filter_rmsd": 0.098, "frame": { "rmsd": 0.009, "origin": [ 169.929, 132.620, 226.609 ], "x_axis": [ -0.625, 0.761, 0.175 ], "y_axis": [ -0.477, -0.195, -0.857 ], "z_axis": [ -0.618, -0.619, 0.485 ], "quaternion": [ 0.408, -0.146, -0.486, 0.759 ] } }, { "index": 2606, "index_chain": 2606, "chain_name": "A", "nt_resnum": 2853, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2853", "linked_nts": [ "///A/2852", "///A/2854" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.776, "beta": 170.640, "gamma": 60.136, "delta": 80.801, "epsilon": -155.380, "zeta": -71.792, "epsilon_zeta": -83.588, "bb_type": "BI", "chi": -170.890, "glyco_bond": "anti", "C5prime_xyz": [ -1.308, 8.629, 1.157 ], "P_xyz": [ 1.276, 8.944, 1.425 ], "form": "A", "ssZp": 4.563, "Dp": 4.591, "splay_angle": 21.565, "splay_distance": 3.526, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 168.026, "theta": -148.633, "eta_prime": -174.995, "theta_prime": -149.587, "eta_base": -125.987, "theta_base": -140.544, "v0": 2.292, "v1": -24.752, "v2": 36.531, "v3": -36.194, "v4": 21.386, "amplitude": 37.854, "phase_angle": 15.195, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.913, "filter_rmsd": 0.061, "frame": { "rmsd": 0.007, "origin": [ 167.863, 131.824, 229.586 ], "x_axis": [ -0.764, 0.517, -0.385 ], "y_axis": [ -0.013, -0.609, -0.793 ], "z_axis": [ -0.645, -0.602, 0.472 ], "quaternion": [ 0.157, -0.305, -0.414, 0.843 ] } }, { "index": 2607, "index_chain": 2607, "chain_name": "A", "nt_resnum": 2854, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2854", "linked_nts": [ "///A/2853", "///A/2855" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -63.109, "beta": 174.224, "gamma": 59.129, "delta": 79.177, "epsilon": -152.693, "zeta": -50.261, "epsilon_zeta": -102.433, "bb_type": "BI", "chi": -154.732, "glyco_bond": "anti", "C5prime_xyz": [ -1.598, 8.816, 0.168 ], "P_xyz": [ 0.919, 9.513, 0.018 ], "form": ".", "ssZp": 4.265, "Dp": 4.575, "splay_angle": 25.157, "splay_distance": 4.766, "splay_ratio": 0.238, "d22": null, "d64": null, "eta": 174.573, "theta": -102.224, "eta_prime": -173.372, "theta_prime": -120.937, "eta_base": -151.077, "theta_base": -99.864, "v0": -1.370, "v1": -22.097, "v2": 35.809, "v3": -37.571, "v4": 24.531, "amplitude": 38.250, "phase_angle": 20.577, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.917, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 166.471, 131.551, 232.814 ], "x_axis": [ -0.821, 0.137, -0.554 ], "y_axis": [ 0.173, -0.866, -0.469 ], "z_axis": [ -0.544, -0.481, 0.687 ], "quaternion": [ -0.010, -0.299, -0.259, 0.918 ] } }, { "index": 2608, "index_chain": 2608, "chain_name": "A", "nt_resnum": 2855, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2855", "linked_nts": [ "///A/2854", "///A/2856" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor", "alpha": 137.162, "beta": 166.374, "gamma": -171.564, "delta": 81.309, "epsilon": -174.499, "zeta": -79.983, "epsilon_zeta": -94.516, "bb_type": "BI", "chi": -171.400, "glyco_bond": "anti", "C5prime_xyz": [ -1.380, 8.602, 1.195 ], "P_xyz": [ -0.605, 10.975, 0.418 ], "form": "A", "ssZp": 4.425, "Dp": 4.424, "splay_angle": 23.322, "splay_distance": 3.906, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 147.338, "theta": 179.199, "eta_prime": 165.446, "theta_prime": -172.142, "eta_base": -148.912, "theta_base": -146.293, "v0": 1.883, "v1": -23.825, "v2": 35.576, "v3": -35.432, "v4": 21.166, "amplitude": 36.965, "phase_angle": 15.755, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.434, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 161.802, 131.950, 233.679 ], "x_axis": [ -0.114, -0.011, -0.993 ], "y_axis": [ 0.559, -0.828, -0.055 ], "z_axis": [ -0.822, -0.561, 0.101 ], "quaternion": [ -0.199, -0.635, -0.216, 0.715 ] } }, { "index": 2609, "index_chain": 2609, "chain_name": "A", "nt_resnum": 2856, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2856", "linked_nts": [ "///A/2855", "///A/2857" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": 168.406, "beta": -145.696, "gamma": 166.388, "delta": 82.630, "epsilon": -104.894, "zeta": 154.045, "epsilon_zeta": 101.061, "bb_type": "BII", "chi": -175.807, "glyco_bond": "anti", "C5prime_xyz": [ -1.382, 8.551, 1.458 ], "P_xyz": [ 0.617, 9.751, 0.286 ], "form": ".", "ssZp": 4.519, "Dp": 4.660, "splay_angle": 96.884, "splay_distance": 13.890, "splay_ratio": 0.748, "d22": null, "d64": null, "eta": -177.398, "theta": 89.187, "eta_prime": -165.911, "theta_prime": 106.119, "eta_base": -134.487, "theta_base": 114.871, "v0": 1.462, "v1": -23.091, "v2": 34.735, "v3": -34.864, "v4": 21.110, "amplitude": 36.204, "phase_angle": 16.379, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.523, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 157.922, 132.404, 233.636 ], "x_axis": [ -0.091, -0.524, -0.847 ], "y_axis": [ 0.454, -0.779, 0.433 ], "z_axis": [ -0.886, -0.345, 0.309 ], "quaternion": [ -0.331, -0.587, 0.030, 0.738 ] } }, { "index": 2610, "index_chain": 2610, "chain_name": "A", "nt_resnum": 2857, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2857", "linked_nts": [ "///A/2856", "///A/2858" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor,phosphate,splayed-apart", "alpha": -75.087, "beta": 159.500, "gamma": 46.138, "delta": 146.973, "epsilon": -144.374, "zeta": 109.925, "epsilon_zeta": 105.700, "bb_type": "--", "chi": -130.474, "glyco_bond": "anti", "C5prime_xyz": [ -1.918, 8.655, -0.706 ], "P_xyz": [ 0.472, 9.313, 0.149 ], "form": ".", "ssZp": 1.775, "Dp": 1.806, "splay_angle": 153.964, "splay_distance": 19.526, "splay_ratio": 0.974, "d22": 12.903, "d64": 16.455, "eta": -171.305, "theta": 107.790, "eta_prime": -159.940, "theta_prime": 71.512, "eta_base": 174.146, "theta_base": 114.231, "v0": -22.379, "v1": 36.487, "v2": -35.864, "v3": 23.865, "v4": -1.113, "amplitude": 37.516, "phase_angle": 162.933, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "3b", "suiteness": 0.453, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 160.328, 133.058, 247.300 ], "x_axis": [ -0.088, 0.690, -0.718 ], "y_axis": [ -0.277, -0.710, -0.648 ], "z_axis": [ -0.957, 0.142, 0.254 ], "quaternion": [ 0.338, -0.585, -0.176, 0.716 ] } }, { "index": 2611, "index_chain": 2611, "chain_name": "A", "nt_resnum": 2858, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2858", "linked_nts": [ "///A/2857", "///A/2859" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,junction-loop,splayed-apart", "alpha": -57.583, "beta": 142.011, "gamma": 173.238, "delta": 149.337, "epsilon": -124.498, "zeta": 83.649, "epsilon_zeta": 151.853, "bb_type": "--", "chi": -132.570, "glyco_bond": "anti", "C5prime_xyz": [ -1.837, 8.629, -0.511 ], "P_xyz": [ -0.770, 10.169, -2.339 ], "form": ".", "ssZp": 1.414, "Dp": 1.420, "splay_angle": 108.834, "splay_distance": 15.597, "splay_ratio": 0.813, "d22": null, "d64": null, "eta": -2.863, "theta": 34.799, "eta_prime": -15.771, "theta_prime": 55.348, "eta_base": -68.886, "theta_base": 30.950, "v0": -20.304, "v1": 35.456, "v2": -36.184, "v3": 25.426, "v4": -3.401, "amplitude": 37.227, "phase_angle": 166.404, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.004, "origin": [ 158.052, 113.722, 248.778 ], "x_axis": [ -0.920, -0.102, 0.377 ], "y_axis": [ -0.233, 0.918, -0.320 ], "z_axis": [ -0.314, -0.382, -0.869 ], "quaternion": [ -0.179, -0.087, 0.963, -0.182 ] } }, { "index": 2612, "index_chain": 2612, "chain_name": "A", "nt_resnum": 2859, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2859", "linked_nts": [ "///A/2858", "///A/2860" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-acceptor,phosphate,splayed-apart", "alpha": -168.569, "beta": -115.349, "gamma": 41.017, "delta": 142.326, "epsilon": -156.257, "zeta": -115.462, "epsilon_zeta": -40.795, "bb_type": "BI", "chi": -47.893, "glyco_bond": "--", "C5prime_xyz": [ -3.920, 6.060, -3.063 ], "P_xyz": [ -2.504, 7.843, -4.364 ], "form": ".", "ssZp": 0.653, "Dp": 2.130, "splay_angle": 48.554, "splay_distance": 8.263, "splay_ratio": 0.412, "d22": null, "d64": null, "eta": 130.949, "theta": -165.837, "eta_prime": 127.387, "theta_prime": -170.475, "eta_base": 123.243, "theta_base": -147.635, "v0": -24.452, "v1": 36.341, "v2": -33.719, "v3": 20.467, "v4": 2.299, "amplitude": 36.453, "phase_angle": 157.670, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 161.780, 128.820, 247.589 ], "x_axis": [ -0.127, -0.253, 0.959 ], "y_axis": [ 0.413, -0.893, -0.181 ], "z_axis": [ 0.902, 0.373, 0.217 ], "quaternion": [ -0.223, 0.622, 0.064, 0.748 ] } }, { "index": 2613, "index_chain": 2613, "chain_name": "A", "nt_resnum": 2860, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2860", "linked_nts": [ "///A/2859", "///A/2861" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,junction-loop,phosphate", "alpha": -119.646, "beta": 107.927, "gamma": 161.551, "delta": 147.454, "epsilon": -91.681, "zeta": 130.419, "epsilon_zeta": 137.900, "bb_type": "BII", "chi": -117.331, "glyco_bond": "anti", "C5prime_xyz": [ -1.846, 8.429, -1.311 ], "P_xyz": [ -1.457, 8.927, -3.853 ], "form": ".", "ssZp": 0.574, "Dp": 0.760, "splay_angle": 51.316, "splay_distance": 8.484, "splay_ratio": 0.435, "d22": null, "d64": null, "eta": -96.114, "theta": 72.099, "eta_prime": -128.401, "theta_prime": 97.016, "eta_base": -120.780, "theta_base": 97.382, "v0": -19.804, "v1": 34.591, "v2": -35.369, "v3": 24.844, "v4": -3.381, "amplitude": 36.377, "phase_angle": 166.482, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.008, "origin": [ 169.742, 127.551, 249.399 ], "x_axis": [ -0.078, -0.666, 0.742 ], "y_axis": [ 0.081, -0.746, -0.661 ], "z_axis": [ 0.994, 0.008, 0.112 ], "quaternion": [ -0.268, 0.624, -0.235, 0.696 ] } }, { "index": 2614, "index_chain": 2614, "chain_name": "A", "nt_resnum": 2861, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2861", "linked_nts": [ "///A/2860", "///A/2862" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 172.411, "beta": -141.229, "gamma": 48.383, "delta": 81.505, "epsilon": -147.322, "zeta": -70.858, "epsilon_zeta": -76.464, "bb_type": "BI", "chi": -162.807, "glyco_bond": "anti", "C5prime_xyz": [ -1.293, 8.701, 0.699 ], "P_xyz": [ 0.862, 9.037, 2.154 ], "form": "A", "ssZp": 4.441, "Dp": 4.607, "splay_angle": 24.266, "splay_distance": 3.899, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 127.526, "theta": -145.256, "eta_prime": 108.557, "theta_prime": -140.216, "eta_base": 114.292, "theta_base": -111.862, "v0": 1.526, "v1": -23.506, "v2": 35.332, "v3": -35.402, "v4": 21.369, "amplitude": 36.807, "phase_angle": 16.271, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4g", "suiteness": 0.010, "filter_rmsd": 0.101, "frame": { "rmsd": 0.008, "origin": [ 166.444, 132.282, 243.177 ], "x_axis": [ -0.169, -0.626, 0.761 ], "y_axis": [ 0.349, -0.760, -0.548 ], "z_axis": [ 0.922, 0.174, 0.347 ], "quaternion": [ -0.323, 0.558, -0.124, 0.754 ] } }, { "index": 2615, "index_chain": 2615, "chain_name": "A", "nt_resnum": 2862, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2862", "linked_nts": [ "///A/2861", "///A/2863" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -66.864, "beta": 167.272, "gamma": 58.369, "delta": 77.041, "epsilon": -150.526, "zeta": -71.280, "epsilon_zeta": -79.246, "bb_type": "BI", "chi": -170.162, "glyco_bond": "anti", "C5prime_xyz": [ -1.661, 8.664, 1.065 ], "P_xyz": [ 0.853, 9.347, 1.166 ], "form": "A", "ssZp": 4.637, "Dp": 4.656, "splay_angle": 23.902, "splay_distance": 3.788, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 163.595, "theta": -148.383, "eta_prime": 179.415, "theta_prime": -148.817, "eta_base": -138.620, "theta_base": -119.615, "v0": 0.014, "v1": -24.365, "v2": 38.104, "v3": -39.097, "v4": 24.619, "amplitude": 40.191, "phase_angle": 18.543, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.917, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 169.029, 133.381, 245.882 ], "x_axis": [ -0.065, -0.936, 0.345 ], "y_axis": [ 0.373, -0.344, -0.862 ], "z_axis": [ 0.926, 0.073, 0.371 ], "quaternion": [ -0.491, 0.476, -0.296, 0.667 ] } }, { "index": 2616, "index_chain": 2616, "chain_name": "A", "nt_resnum": 2863, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2863", "linked_nts": [ "///A/2862", "///A/2864" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -64.926, "beta": 168.517, "gamma": 58.906, "delta": 76.807, "epsilon": -139.594, "zeta": -68.028, "epsilon_zeta": -71.565, "bb_type": "BI", "chi": -175.671, "glyco_bond": "anti", "C5prime_xyz": [ -1.529, 8.595, 1.396 ], "P_xyz": [ 1.011, 9.143, 1.661 ], "form": "A", "ssZp": 4.744, "Dp": 4.742, "splay_angle": 26.983, "splay_distance": 4.305, "splay_ratio": 0.240, "d22": null, "d64": null, "eta": 168.905, "theta": -137.101, "eta_prime": -178.457, "theta_prime": -135.145, "eta_base": -132.487, "theta_base": -100.728, "v0": 1.529, "v1": -25.537, "v2": 38.565, "v3": -38.674, "v4": 23.442, "amplitude": 40.211, "phase_angle": 16.452, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.879, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 171.198, 133.004, 248.964 ], "x_axis": [ 0.104, -0.969, -0.225 ], "y_axis": [ 0.335, 0.247, -0.909 ], "z_axis": [ 0.937, 0.019, 0.350 ], "quaternion": [ 0.652, -0.356, 0.445, -0.500 ] } }, { "index": 2617, "index_chain": 2617, "chain_name": "A", "nt_resnum": 2864, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2864", "linked_nts": [ "///A/2863", "///A/2865" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -59.501, "beta": 164.421, "gamma": 60.688, "delta": 77.272, "epsilon": -145.767, "zeta": -67.428, "epsilon_zeta": -78.339, "bb_type": "BI", "chi": 179.140, "glyco_bond": "anti", "C5prime_xyz": [ -1.838, 8.536, 1.670 ], "P_xyz": [ 0.626, 9.218, 2.165 ], "form": "A", "ssZp": 4.649, "Dp": 4.628, "splay_angle": 27.097, "splay_distance": 4.076, "splay_ratio": 0.236, "d22": null, "d64": null, "eta": 169.572, "theta": -140.566, "eta_prime": -171.064, "theta_prime": -137.440, "eta_base": -115.092, "theta_base": -87.833, "v0": -1.861, "v1": -21.980, "v2": 36.080, "v3": -38.163, "v4": 25.248, "amplitude": 38.725, "phase_angle": 21.299, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.817, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 174.098, 130.419, 250.820 ], "x_axis": [ 0.207, -0.592, -0.779 ], "y_axis": [ 0.123, 0.806, -0.580 ], "z_axis": [ 0.971, 0.024, 0.239 ], "quaternion": [ 0.750, -0.201, 0.583, -0.238 ] } }, { "index": 2618, "index_chain": 2618, "chain_name": "A", "nt_resnum": 2865, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2865", "linked_nts": [ "///A/2864", "///A/2866" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -63.604, "beta": -179.851, "gamma": 47.687, "delta": 84.405, "epsilon": -171.959, "zeta": -77.150, "epsilon_zeta": -94.809, "bb_type": "BI", "chi": -167.325, "glyco_bond": "anti", "C5prime_xyz": [ -1.099, 8.521, 1.024 ], "P_xyz": [ 1.392, 8.570, 1.820 ], "form": "A", "ssZp": 4.369, "Dp": 4.411, "splay_angle": 20.781, "splay_distance": 3.244, "splay_ratio": 0.183, "d22": 4.245, "d64": 4.030, "eta": 165.031, "theta": -132.717, "eta_prime": -175.069, "theta_prime": -136.227, "eta_base": -106.019, "theta_base": -107.136, "v0": 4.659, "v1": -25.060, "v2": 34.885, "v3": -33.178, "v4": 18.005, "amplitude": 35.576, "phase_angle": 11.305, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.883, "filter_rmsd": 0.105, "frame": { "rmsd": 0.007, "origin": [ 177.759, 128.800, 250.056 ], "x_axis": [ 0.153, 0.284, -0.946 ], "y_axis": [ -0.137, 0.955, 0.265 ], "z_axis": [ 0.979, 0.089, 0.185 ], "quaternion": [ 0.757, 0.058, 0.636, 0.139 ] } }, { "index": 2619, "index_chain": 2619, "chain_name": "A", "nt_resnum": 2866, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2866", "linked_nts": [ "///A/2865", "///A/2867" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -171.555, "beta": -142.179, "gamma": 129.665, "delta": 79.221, "epsilon": -140.376, "zeta": -74.969, "epsilon_zeta": -65.406, "bb_type": "BI", "chi": -175.590, "glyco_bond": "anti", "C5prime_xyz": [ -1.445, 8.615, 1.431 ], "P_xyz": [ 1.074, 9.030, 0.912 ], "form": "A", "ssZp": 4.605, "Dp": 4.634, "splay_angle": 22.500, "splay_distance": 3.609, "splay_ratio": 0.198, "d22": 4.247, "d64": 4.348, "eta": 155.641, "theta": -140.228, "eta_prime": 174.554, "theta_prime": -144.724, "eta_base": -136.632, "theta_base": -121.679, "v0": -0.233, "v1": -22.705, "v2": 35.783, "v3": -36.904, "v4": 23.418, "amplitude": 37.838, "phase_angle": 18.968, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.006, "origin": [ 180.850, 128.054, 249.414 ], "x_axis": [ -0.041, 0.795, -0.606 ], "y_axis": [ -0.124, 0.598, 0.792 ], "z_axis": [ 0.991, 0.107, 0.074 ], "quaternion": [ 0.639, 0.268, 0.625, 0.360 ] } }, { "index": 2620, "index_chain": 2620, "chain_name": "A", "nt_resnum": 2867, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2867", "linked_nts": [ "///A/2866", "///A/2868" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -55.596, "beta": 171.557, "gamma": 43.937, "delta": 78.542, "epsilon": -156.908, "zeta": -77.696, "epsilon_zeta": -79.211, "bb_type": "BI", "chi": -165.159, "glyco_bond": "anti", "C5prime_xyz": [ -1.540, 8.692, 0.808 ], "P_xyz": [ 0.947, 9.291, 1.302 ], "form": ".", "ssZp": 4.527, "Dp": 4.600, "splay_angle": 20.929, "splay_distance": 3.771, "splay_ratio": 0.200, "d22": null, "d64": null, "eta": 163.195, "theta": -129.737, "eta_prime": 178.212, "theta_prime": -137.660, "eta_base": -137.797, "theta_base": -118.704, "v0": 1.018, "v1": -24.462, "v2": 37.322, "v3": -37.779, "v4": 23.136, "amplitude": 39.058, "phase_angle": 17.145, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.776, "filter_rmsd": 0.097, "frame": { "rmsd": 0.009, "origin": [ 184.085, 128.092, 247.815 ], "x_axis": [ -0.159, 0.985, -0.065 ], "y_axis": [ -0.052, 0.058, 0.997 ], "z_axis": [ 0.986, 0.162, 0.042 ], "quaternion": [ 0.485, 0.431, 0.542, 0.535 ] } }, { "index": 2621, "index_chain": 2621, "chain_name": "A", "nt_resnum": 2868, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2868", "linked_nts": [ "///A/2867", "///A/2869" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 162.233, "beta": -163.563, "gamma": 170.283, "delta": 80.923, "epsilon": -148.759, "zeta": -77.445, "epsilon_zeta": -71.314, "bb_type": "BI", "chi": -170.351, "glyco_bond": "anti", "C5prime_xyz": [ -1.314, 8.609, 1.145 ], "P_xyz": [ 0.273, 10.221, -0.174 ], "form": "A", "ssZp": 4.608, "Dp": 4.648, "splay_angle": 30.604, "splay_distance": 4.538, "splay_ratio": 0.264, "d22": null, "d64": null, "eta": 160.162, "theta": -171.941, "eta_prime": 176.160, "theta_prime": -167.788, "eta_base": -146.203, "theta_base": -133.024, "v0": 3.114, "v1": -25.285, "v2": 36.652, "v3": -35.853, "v4": 20.654, "amplitude": 37.773, "phase_angle": 13.992, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.786, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 186.548, 129.771, 245.504 ], "x_axis": [ -0.252, 0.874, 0.415 ], "y_axis": [ 0.231, -0.362, 0.903 ], "z_axis": [ 0.940, 0.323, -0.111 ], "quaternion": [ 0.262, 0.553, 0.500, 0.613 ] } }, { "index": 2622, "index_chain": 2622, "chain_name": "A", "nt_resnum": 2869, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2869", "linked_nts": [ "///A/2868", "///A/2870" ], "nt_type": "RNA", "dbn": ".", "summary": "~C3'-endo,non-pair-contact,internal-loop", "alpha": -58.720, "beta": 175.739, "gamma": 48.947, "delta": 84.925, "epsilon": -120.407, "zeta": -86.844, "epsilon_zeta": -33.563, "bb_type": "--", "chi": 175.181, "glyco_bond": "--", "C5prime_xyz": [ -1.405, 8.123, 1.964 ], "P_xyz": [ 0.990, 7.952, 3.009 ], "form": "A", "ssZp": 4.719, "Dp": 4.733, "splay_angle": 24.619, "splay_distance": 3.755, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 179.398, "theta": -131.318, "eta_prime": -172.003, "theta_prime": -125.744, "eta_base": -131.602, "theta_base": -86.111, "v0": 5.125, "v1": -25.247, "v2": 34.673, "v3": -32.697, "v4": 17.425, "amplitude": 35.261, "phase_angle": 10.486, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.901, "filter_rmsd": 0.039, "frame": { "rmsd": 0.011, "origin": [ 190.196, 132.268, 244.482 ], "x_axis": [ -0.369, 0.377, 0.849 ], "y_axis": [ 0.072, -0.900, 0.431 ], "z_axis": [ 0.927, 0.220, 0.305 ], "quaternion": [ 0.095, 0.553, 0.203, 0.802 ] } }, { "index": 2623, "index_chain": 2623, "chain_name": "A", "nt_resnum": 2870, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2870", "linked_nts": [ "///A/2869", "///A/2871" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -55.141, "beta": 148.860, "gamma": 60.466, "delta": 83.742, "epsilon": -151.300, "zeta": -63.987, "epsilon_zeta": -87.313, "bb_type": "BI", "chi": -174.553, "glyco_bond": "anti", "C5prime_xyz": [ -1.541, 8.570, 1.370 ], "P_xyz": [ 1.064, 8.761, 1.446 ], "form": "A", "ssZp": 4.463, "Dp": 4.519, "splay_angle": 25.939, "splay_distance": 4.179, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 163.020, "theta": -133.066, "eta_prime": -173.627, "theta_prime": -136.494, "eta_base": -113.208, "theta_base": -112.527, "v0": 0.382, "v1": -21.584, "v2": 33.229, "v3": -33.968, "v4": 21.248, "amplitude": 34.941, "phase_angle": 18.011, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.396, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 192.548, 134.387, 246.502 ], "x_axis": [ -0.216, -0.344, 0.914 ], "y_axis": [ 0.307, -0.913, -0.271 ], "z_axis": [ 0.927, 0.222, 0.302 ], "quaternion": [ -0.209, 0.590, -0.016, 0.780 ] } }, { "index": 2624, "index_chain": 2624, "chain_name": "A", "nt_resnum": 2871, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2871", "linked_nts": [ "///A/2870", "///A/2872" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -68.163, "beta": -172.301, "gamma": 49.116, "delta": 82.222, "epsilon": -147.460, "zeta": -74.630, "epsilon_zeta": -72.830, "bb_type": "BI", "chi": -154.715, "glyco_bond": "anti", "C5prime_xyz": [ -1.387, 8.848, 0.230 ], "P_xyz": [ 1.075, 9.444, 0.863 ], "form": ".", "ssZp": 4.176, "Dp": 4.528, "splay_angle": 25.912, "splay_distance": 4.149, "splay_ratio": 0.224, "d22": null, "d64": null, "eta": 172.088, "theta": -146.203, "eta_prime": -173.856, "theta_prime": -141.046, "eta_base": -133.070, "theta_base": -105.697, "v0": -0.694, "v1": -21.368, "v2": 34.070, "v3": -35.380, "v4": 22.751, "amplitude": 36.178, "phase_angle": 19.658, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.871, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 195.233, 136.377, 249.011 ], "x_axis": [ 0.015, -0.833, 0.554 ], "y_axis": [ 0.366, -0.511, -0.778 ], "z_axis": [ 0.930, 0.214, 0.297 ], "quaternion": [ -0.448, 0.554, -0.210, 0.670 ] } }, { "index": 2625, "index_chain": 2625, "chain_name": "A", "nt_resnum": 2872, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2872", "linked_nts": [ "///A/2871", "///A/2873" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -59.963, "beta": 161.970, "gamma": 63.235, "delta": 81.581, "epsilon": 172.356, "zeta": 43.125, "epsilon_zeta": 129.231, "bb_type": "--", "chi": -156.289, "glyco_bond": "anti", "C5prime_xyz": [ -1.394, 8.781, 0.314 ], "P_xyz": [ 1.172, 9.140, 0.085 ], "form": ".", "ssZp": 4.044, "Dp": 4.174, "splay_angle": 30.979, "splay_distance": 5.341, "splay_ratio": 0.274, "d22": null, "d64": null, "eta": 171.813, "theta": -86.653, "eta_prime": -164.882, "theta_prime": -102.627, "eta_base": -116.091, "theta_base": -66.174, "v0": -0.377, "v1": -21.284, "v2": 33.519, "v3": -34.736, "v4": 22.272, "amplitude": 35.512, "phase_angle": 19.287, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.791, "filter_rmsd": 0.105, "frame": { "rmsd": 0.009, "origin": [ 198.717, 136.052, 251.240 ], "x_axis": [ 0.176, -0.984, -0.029 ], "y_axis": [ 0.320, 0.085, -0.944 ], "z_axis": [ 0.931, 0.157, 0.330 ], "quaternion": [ 0.631, -0.436, 0.381, -0.517 ] } }, { "index": 2626, "index_chain": 2626, "chain_name": "A", "nt_resnum": 2873, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2873", "linked_nts": [ "///A/2872", "///A/2874" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate", "alpha": -150.813, "beta": 91.102, "gamma": 151.164, "delta": 86.851, "epsilon": -120.474, "zeta": -127.076, "epsilon_zeta": 6.603, "bb_type": "--", "chi": 174.057, "glyco_bond": "anti", "C5prime_xyz": [ -1.819, 8.381, 1.893 ], "P_xyz": [ -1.319, 10.283, 0.189 ], "form": ".", "ssZp": 4.389, "Dp": 4.436, "splay_angle": 46.244, "splay_distance": 7.135, "splay_ratio": 0.393, "d22": null, "d64": null, "eta": 179.016, "theta": 132.277, "eta_prime": -158.022, "theta_prime": 161.312, "eta_base": -92.404, "theta_base": 179.750, "v0": -3.984, "v1": -16.297, "v2": 29.060, "v3": -32.195, "v4": 22.932, "amplitude": 32.218, "phase_angle": 25.580, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 202.439, 132.225, 251.066 ], "x_axis": [ 0.334, -0.625, -0.706 ], "y_axis": [ 0.188, 0.778, -0.600 ], "z_axis": [ 0.924, 0.067, 0.377 ], "quaternion": [ 0.789, -0.211, 0.516, -0.258 ] } }, { "index": 2627, "index_chain": 2627, "chain_name": "A", "nt_resnum": 2874, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2874", "linked_nts": [ "///A/2873", "///A/2875" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart", "alpha": -53.621, "beta": 136.668, "gamma": 93.106, "delta": 147.998, "epsilon": -148.275, "zeta": 135.955, "epsilon_zeta": 75.770, "bb_type": "--", "chi": -151.058, "glyco_bond": "anti", "C5prime_xyz": [ -2.054, 8.725, 0.469 ], "P_xyz": [ 0.533, 9.035, 0.254 ], "form": ".", "ssZp": 1.475, "Dp": 1.883, "splay_angle": 95.809, "splay_distance": 13.676, "splay_ratio": 0.742, "d22": null, "d64": null, "eta": -162.794, "theta": 132.580, "eta_prime": -126.578, "theta_prime": 102.562, "eta_base": -129.455, "theta_base": 137.810, "v0": -22.912, "v1": 37.228, "v2": -36.490, "v3": 24.203, "v4": -1.011, "amplitude": 38.214, "phase_angle": 162.724, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 205.427, 133.353, 257.446 ], "x_axis": [ 0.529, -0.513, -0.676 ], "y_axis": [ 0.036, 0.809, -0.586 ], "z_axis": [ 0.848, 0.286, 0.446 ], "quaternion": [ 0.834, -0.261, 0.457, -0.165 ] } }, { "index": 2628, "index_chain": 2628, "chain_name": "A", "nt_resnum": 2875, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2875", "linked_nts": [ "///A/2874", "///A/2876" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate,splayed-apart", "alpha": -39.721, "beta": 161.278, "gamma": 43.460, "delta": 79.159, "epsilon": -127.206, "zeta": -84.501, "epsilon_zeta": -42.705, "bb_type": "--", "chi": 170.795, "glyco_bond": "anti", "C5prime_xyz": [ -1.940, 8.275, 2.086 ], "P_xyz": [ 0.353, 8.541, 3.303 ], "form": "A", "ssZp": 4.611, "Dp": 4.645, "splay_angle": 24.139, "splay_distance": 3.705, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": -144.131, "theta": -140.306, "eta_prime": -159.568, "theta_prime": -134.474, "eta_base": -176.547, "theta_base": -92.395, "v0": -1.913, "v1": -21.300, "v2": 35.120, "v3": -37.190, "v4": 24.674, "amplitude": 37.735, "phase_angle": 21.454, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.176, "filter_rmsd": 0.042, "frame": { "rmsd": 0.009, "origin": [ 195.591, 141.101, 262.948 ], "x_axis": [ 0.375, -0.857, 0.354 ], "y_axis": [ 0.666, -0.017, -0.746 ], "z_axis": [ 0.645, 0.515, 0.565 ], "quaternion": [ 0.693, -0.455, 0.105, -0.549 ] } }, { "index": 2629, "index_chain": 2629, "chain_name": "A", "nt_resnum": 2876, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2876", "linked_nts": [ "///A/2875", "///A/2877" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop", "alpha": -62.949, "beta": 156.970, "gamma": 63.762, "delta": 86.274, "epsilon": -142.071, "zeta": -55.623, "epsilon_zeta": -86.448, "bb_type": "BI", "chi": -175.967, "glyco_bond": "anti", "C5prime_xyz": [ -1.680, 8.535, 1.436 ], "P_xyz": [ 0.894, 8.790, 1.854 ], "form": ".", "ssZp": 4.308, "Dp": 4.420, "splay_angle": 24.768, "splay_distance": 4.015, "splay_ratio": 0.216, "d22": null, "d64": null, "eta": 167.902, "theta": -117.414, "eta_prime": -173.413, "theta_prime": -119.797, "eta_base": -116.688, "theta_base": -66.330, "v0": -1.828, "v1": -18.399, "v2": 30.310, "v3": -32.265, "v4": 21.528, "amplitude": 32.634, "phase_angle": 21.753, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.554, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 197.442, 141.612, 266.116 ], "x_axis": [ 0.702, -0.650, -0.289 ], "y_axis": [ 0.184, 0.558, -0.809 ], "z_axis": [ 0.687, 0.515, 0.512 ], "quaternion": [ 0.833, -0.398, 0.293, -0.251 ] } }, { "index": 2630, "index_chain": 2630, "chain_name": "A", "nt_resnum": 2877, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2877", "linked_nts": [ "///A/2876", "///A/2878" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -73.361, "beta": 169.905, "gamma": 54.728, "delta": 83.282, "epsilon": -151.241, "zeta": -71.172, "epsilon_zeta": -80.069, "bb_type": "BI", "chi": -158.430, "glyco_bond": "anti", "C5prime_xyz": [ -1.628, 8.874, 0.426 ], "P_xyz": [ 0.885, 9.476, 0.836 ], "form": "A", "ssZp": 4.132, "Dp": 4.372, "splay_angle": 18.906, "splay_distance": 3.128, "splay_ratio": 0.165, "d22": null, "d64": null, "eta": 156.058, "theta": -142.179, "eta_prime": -176.222, "theta_prime": -142.620, "eta_base": -97.173, "theta_base": -109.266, "v0": -3.656, "v1": -17.878, "v2": 31.313, "v3": -34.287, "v4": 23.971, "amplitude": 34.427, "phase_angle": 24.558, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.764, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 201.445, 141.478, 266.406 ], "x_axis": [ 0.520, 0.057, -0.852 ], "y_axis": [ -0.416, 0.889, -0.194 ], "z_axis": [ 0.746, 0.455, 0.485 ], "quaternion": [ 0.851, -0.191, 0.470, 0.139 ] } }, { "index": 2631, "index_chain": 2631, "chain_name": "A", "nt_resnum": 2878, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2878", "linked_nts": [ "///A/2877", "///A/2879" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -60.345, "beta": 166.231, "gamma": 50.784, "delta": 81.150, "epsilon": -144.631, "zeta": -81.117, "epsilon_zeta": -63.515, "bb_type": "BI", "chi": -152.709, "glyco_bond": "anti", "C5prime_xyz": [ -1.710, 8.880, 0.050 ], "P_xyz": [ 0.805, 9.596, 0.160 ], "form": "A", "ssZp": 4.036, "Dp": 4.456, "splay_angle": 26.709, "splay_distance": 4.376, "splay_ratio": 0.231, "d22": null, "d64": null, "eta": 166.593, "theta": -147.888, "eta_prime": -177.621, "theta_prime": -146.733, "eta_base": -130.216, "theta_base": -117.471, "v0": -4.833, "v1": -17.369, "v2": 31.666, "v3": -35.332, "v4": 25.367, "amplitude": 35.322, "phase_angle": 26.298, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.948, "filter_rmsd": 0.101, "frame": { "rmsd": 0.007, "origin": [ 204.438, 142.121, 267.046 ], "x_axis": [ 0.149, 0.524, -0.838 ], "y_axis": [ -0.539, 0.754, 0.375 ], "z_axis": [ 0.829, 0.396, 0.395 ], "quaternion": [ 0.758, -0.007, 0.550, 0.351 ] } }, { "index": 2632, "index_chain": 2632, "chain_name": "A", "nt_resnum": 2879, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2879", "linked_nts": [ "///A/2878", "///A/2880" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -54.204, "beta": 160.288, "gamma": 50.529, "delta": 80.646, "epsilon": -155.308, "zeta": -71.851, "epsilon_zeta": -83.457, "bb_type": "BI", "chi": -167.196, "glyco_bond": "anti", "C5prime_xyz": [ -1.752, 8.775, 0.915 ], "P_xyz": [ 0.759, 9.373, 1.318 ], "form": "A", "ssZp": 4.407, "Dp": 4.471, "splay_angle": 21.621, "splay_distance": 3.448, "splay_ratio": 0.189, "d22": null, "d64": null, "eta": 165.601, "theta": -148.129, "eta_prime": -179.038, "theta_prime": -148.775, "eta_base": -135.729, "theta_base": -119.912, "v0": -2.699, "v1": -19.808, "v2": 33.444, "v3": -35.964, "v4": 24.384, "amplitude": 36.275, "phase_angle": 22.787, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.807, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 208.352, 144.025, 267.499 ], "x_axis": [ -0.407, 0.672, -0.619 ], "y_axis": [ -0.628, 0.286, 0.723 ], "z_axis": [ 0.663, 0.683, 0.306 ], "quaternion": [ 0.544, 0.018, 0.589, 0.597 ] } }, { "index": 2633, "index_chain": 2633, "chain_name": "A", "nt_resnum": 2880, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2880", "linked_nts": [ "///A/2879", "///A/2881" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -65.280, "beta": 173.891, "gamma": 52.644, "delta": 81.588, "epsilon": -147.695, "zeta": -71.966, "epsilon_zeta": -75.730, "bb_type": "BI", "chi": -162.442, "glyco_bond": "anti", "C5prime_xyz": [ -1.492, 8.716, 0.662 ], "P_xyz": [ 1.049, 9.229, 1.025 ], "form": "A", "ssZp": 4.425, "Dp": 4.588, "splay_angle": 24.452, "splay_distance": 3.954, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 168.193, "theta": -143.806, "eta_prime": -179.231, "theta_prime": -142.401, "eta_base": -135.951, "theta_base": -121.662, "v0": 0.297, "v1": -22.314, "v2": 34.578, "v3": -35.395, "v4": 22.114, "amplitude": 36.389, "phase_angle": 18.156, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.961, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 211.013, 146.165, 267.022 ], "x_axis": [ -0.699, 0.708, -0.103 ], "y_axis": [ -0.265, -0.122, 0.957 ], "z_axis": [ 0.664, 0.696, 0.272 ], "quaternion": [ 0.336, 0.194, 0.571, 0.723 ] } }, { "index": 2634, "index_chain": 2634, "chain_name": "A", "nt_resnum": 2881, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2881", "linked_nts": [ "///A/2880", "///A/2882" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop", "alpha": -68.804, "beta": -171.144, "gamma": 41.225, "delta": 81.393, "epsilon": -149.840, "zeta": -71.331, "epsilon_zeta": -78.509, "bb_type": "BI", "chi": -155.340, "glyco_bond": "anti", "C5prime_xyz": [ -1.460, 8.754, 0.253 ], "P_xyz": [ 0.967, 9.436, 0.954 ], "form": "A", "ssZp": 4.291, "Dp": 4.621, "splay_angle": 21.125, "splay_distance": 3.372, "splay_ratio": 0.184, "d22": null, "d64": null, "eta": 162.960, "theta": -147.385, "eta_prime": 172.005, "theta_prime": -143.440, "eta_base": -156.205, "theta_base": -107.791, "v0": 2.605, "v1": -24.622, "v2": 36.048, "v3": -35.561, "v4": 20.782, "amplitude": 37.269, "phase_angle": 14.705, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.688, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 213.192, 149.412, 266.435 ], "x_axis": [ -0.927, 0.229, 0.296 ], "y_axis": [ 0.169, -0.449, 0.877 ], "z_axis": [ 0.334, 0.863, 0.378 ], "quaternion": [ 0.018, 0.190, 0.524, 0.830 ] } }, { "index": 2635, "index_chain": 2635, "chain_name": "A", "nt_resnum": 2882, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2882", "linked_nts": [ "///A/2881", "///A/2883" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,cap-acceptor,splayed-apart", "alpha": -63.165, "beta": 167.169, "gamma": 53.584, "delta": 80.052, "epsilon": -131.744, "zeta": -54.073, "epsilon_zeta": -77.671, "bb_type": "BI", "chi": -159.883, "glyco_bond": "anti", "C5prime_xyz": [ -1.514, 8.742, 0.516 ], "P_xyz": [ 1.055, 9.233, 0.482 ], "form": ".", "ssZp": 4.370, "Dp": 4.726, "splay_angle": 85.086, "splay_distance": 12.069, "splay_ratio": 0.676, "d22": null, "d64": null, "eta": 167.623, "theta": -102.360, "eta_prime": -178.778, "theta_prime": -149.842, "eta_base": -132.017, "theta_base": 154.371, "v0": 1.919, "v1": -24.521, "v2": 36.535, "v3": -36.456, "v4": 21.792, "amplitude": 37.968, "phase_angle": 15.795, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.975, "filter_rmsd": 0.014, "frame": { "rmsd": 0.014, "origin": [ 212.656, 152.612, 267.353 ], "x_axis": [ -0.706, -0.208, 0.677 ], "y_axis": [ 0.693, -0.399, 0.601 ], "z_axis": [ 0.145, 0.893, 0.426 ], "quaternion": [ -0.283, 0.258, 0.470, 0.795 ] } }, { "index": 2636, "index_chain": 2636, "chain_name": "A", "nt_resnum": 2883, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2883", "linked_nts": [ "///A/2882", "///A/2884" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart", "alpha": 173.645, "beta": 138.799, "gamma": 42.423, "delta": 85.895, "epsilon": -148.726, "zeta": -69.527, "epsilon_zeta": -79.198, "bb_type": "BI", "chi": -162.563, "glyco_bond": "anti", "C5prime_xyz": [ -1.399, 8.771, 0.691 ], "P_xyz": [ 1.204, 8.647, 1.003 ], "form": ".", "ssZp": 4.249, "Dp": 4.421, "splay_angle": 24.876, "splay_distance": 3.910, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 4.072, "theta": -129.117, "eta_prime": 38.664, "theta_prime": -130.224, "eta_base": 22.623, "theta_base": -81.886, "v0": -1.194, "v1": -18.915, "v2": 30.520, "v3": -32.136, "v4": 21.033, "amplitude": 32.621, "phase_angle": 20.676, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1g", "suiteness": 0.637, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 222.640, 159.053, 265.229 ], "x_axis": [ 0.766, -0.642, -0.031 ], "y_axis": [ -0.315, -0.416, 0.853 ], "z_axis": [ -0.561, -0.643, -0.521 ], "quaternion": [ 0.455, 0.822, -0.291, -0.180 ] } }, { "index": 2637, "index_chain": 2637, "chain_name": "A", "nt_resnum": 2884, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2884", "linked_nts": [ "///A/2883", "///A/2885" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,ribose-zipper,cap-donor,phosphate", "alpha": -63.910, "beta": 173.227, "gamma": 49.675, "delta": 87.476, "epsilon": -145.504, "zeta": -92.208, "epsilon_zeta": -53.296, "bb_type": "BI", "chi": -145.347, "glyco_bond": "anti", "C5prime_xyz": [ -0.962, 8.641, -0.249 ], "P_xyz": [ 1.667, 8.599, -0.156 ], "form": ".", "ssZp": 3.878, "Dp": 4.586, "splay_angle": 22.810, "splay_distance": 3.674, "splay_ratio": 0.201, "d22": null, "d64": null, "eta": 167.489, "theta": -153.580, "eta_prime": -172.842, "theta_prime": -153.333, "eta_base": -106.818, "theta_base": -141.419, "v0": 5.625, "v1": -24.359, "v2": 32.859, "v3": -30.551, "v4": 15.775, "amplitude": 33.286, "phase_angle": 9.179, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.843, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 222.084, 155.365, 264.057 ], "x_axis": [ 0.236, -0.727, 0.644 ], "y_axis": [ -0.859, 0.153, 0.488 ], "z_axis": [ -0.454, -0.669, -0.589 ], "quaternion": [ 0.447, 0.647, -0.614, 0.074 ] } }, { "index": 2638, "index_chain": 2638, "chain_name": "A", "nt_resnum": 2885, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2885", "linked_nts": [ "///A/2884", "///A/2886" ], "nt_type": "RNA", "dbn": ".", "summary": "u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,ribose-zipper,cap-donor,phosphate", "alpha": -57.677, "beta": 154.537, "gamma": 57.574, "delta": 83.895, "epsilon": -122.613, "zeta": -77.793, "epsilon_zeta": -44.820, "bb_type": "--", "chi": -146.414, "glyco_bond": "anti", "C5prime_xyz": [ -1.160, 8.678, -0.266 ], "P_xyz": [ 1.372, 8.638, -0.906 ], "form": ".", "ssZp": 3.688, "Dp": 4.699, "splay_angle": 60.916, "splay_distance": 9.577, "splay_ratio": 0.507, "d22": null, "d64": null, "eta": 175.417, "theta": -77.629, "eta_prime": -176.692, "theta_prime": -75.774, "eta_base": -157.352, "theta_base": -47.352, "v0": 3.073, "v1": -24.010, "v2": 34.633, "v3": -33.845, "v4": 19.431, "amplitude": 35.663, "phase_angle": 13.807, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.573, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 220.555, 153.343, 261.397 ], "x_axis": [ -0.062, -0.600, 0.798 ], "y_axis": [ -0.943, 0.297, 0.150 ], "z_axis": [ -0.327, -0.743, -0.584 ], "quaternion": [ -0.403, -0.553, 0.697, -0.213 ] } }, { "index": 2639, "index_chain": 2639, "chain_name": "A", "nt_resnum": 2886, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2886", "linked_nts": [ "///A/2885", "///A/2887" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,cap-acceptor", "alpha": 149.493, "beta": -117.596, "gamma": 174.306, "delta": 83.068, "epsilon": -144.885, "zeta": -75.986, "epsilon_zeta": -68.899, "bb_type": "BI", "chi": -167.139, "glyco_bond": "anti", "C5prime_xyz": [ -1.149, 8.622, 0.961 ], "P_xyz": [ 0.432, 9.251, -1.026 ], "form": "A", "ssZp": 4.546, "Dp": 4.648, "splay_angle": 26.751, "splay_distance": 4.119, "splay_ratio": 0.231, "d22": null, "d64": null, "eta": 161.306, "theta": -154.440, "eta_prime": -149.698, "theta_prime": -160.543, "eta_base": -88.802, "theta_base": -138.182, "v0": 3.751, "v1": -24.941, "v2": 35.483, "v3": -34.316, "v4": 19.292, "amplitude": 36.395, "phase_angle": 12.853, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.044, "filter_rmsd": 0.063, "frame": { "rmsd": 0.005, "origin": [ 213.463, 150.023, 266.911 ], "x_axis": [ -0.864, 0.348, 0.363 ], "y_axis": [ -0.236, 0.356, -0.904 ], "z_axis": [ -0.444, -0.867, -0.226 ], "quaternion": [ -0.258, 0.036, 0.782, -0.566 ] } }, { "index": 2640, "index_chain": 2640, "chain_name": "A", "nt_resnum": 2887, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2887", "linked_nts": [ "///A/2886", "///A/2888" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -71.721, "beta": -177.428, "gamma": 55.010, "delta": 84.862, "epsilon": -156.893, "zeta": -68.682, "epsilon_zeta": -88.210, "bb_type": "BI", "chi": -159.923, "glyco_bond": "anti", "C5prime_xyz": [ -1.159, 8.596, 0.556 ], "P_xyz": [ 1.428, 8.801, 0.915 ], "form": "A", "ssZp": 4.405, "Dp": 4.564, "splay_angle": 21.074, "splay_distance": 3.326, "splay_ratio": 0.184, "d22": null, "d64": null, "eta": 168.075, "theta": -144.347, "eta_prime": -179.292, "theta_prime": -144.293, "eta_base": -142.218, "theta_base": -120.185, "v0": 4.715, "v1": -25.152, "v2": 34.879, "v3": -33.139, "v4": 17.956, "amplitude": 35.555, "phase_angle": 11.187, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.906, "filter_rmsd": 0.038, "frame": { "rmsd": 0.009, "origin": [ 211.335, 146.524, 267.350 ], "x_axis": [ -0.721, 0.671, -0.171 ], "y_axis": [ 0.301, 0.081, -0.950 ], "z_axis": [ -0.624, -0.737, -0.260 ], "quaternion": [ -0.158, 0.338, 0.718, -0.587 ] } }, { "index": 2641, "index_chain": 2641, "chain_name": "A", "nt_resnum": 2888, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2888", "linked_nts": [ "///A/2887", "///A/2889" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -72.879, "beta": 171.689, "gamma": 64.226, "delta": 82.355, "epsilon": -138.916, "zeta": -80.099, "epsilon_zeta": -58.817, "bb_type": "BI", "chi": -158.812, "glyco_bond": "anti", "C5prime_xyz": [ -1.296, 8.783, 0.446 ], "P_xyz": [ 1.300, 9.133, 0.315 ], "form": "A", "ssZp": 4.327, "Dp": 4.641, "splay_angle": 22.087, "splay_distance": 3.543, "splay_ratio": 0.192, "d22": null, "d64": null, "eta": 171.489, "theta": -143.122, "eta_prime": -174.525, "theta_prime": -141.617, "eta_base": -136.225, "theta_base": -126.578, "v0": 0.996, "v1": -22.781, "v2": 34.648, "v3": -35.011, "v4": 21.467, "amplitude": 36.241, "phase_angle": 17.049, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.747, "filter_rmsd": 0.060, "frame": { "rmsd": 0.006, "origin": [ 208.589, 144.679, 267.698 ], "x_axis": [ -0.459, 0.612, -0.644 ], "y_axis": [ 0.554, -0.370, -0.746 ], "z_axis": [ -0.695, -0.699, -0.169 ], "quaternion": [ 0.022, -0.520, -0.561, 0.644 ] } }, { "index": 2642, "index_chain": 2642, "chain_name": "A", "nt_resnum": 2889, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2889", "linked_nts": [ "///A/2888", "///A/2890" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -78.401, "beta": 177.394, "gamma": 62.332, "delta": 85.179, "epsilon": -159.708, "zeta": -69.296, "epsilon_zeta": -90.413, "bb_type": "BI", "chi": -143.231, "glyco_bond": "anti", "C5prime_xyz": [ -1.520, 8.739, -0.435 ], "P_xyz": [ 1.052, 9.225, -0.646 ], "form": ".", "ssZp": 3.811, "Dp": 4.380, "splay_angle": 16.624, "splay_distance": 2.708, "splay_ratio": 0.145, "d22": null, "d64": null, "eta": 164.491, "theta": -145.793, "eta_prime": 177.869, "theta_prime": -147.764, "eta_base": -155.984, "theta_base": -114.091, "v0": -0.187, "v1": -20.255, "v2": 31.754, "v3": -32.712, "v4": 20.798, "amplitude": 33.561, "phase_angle": 18.891, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.716, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 205.436, 143.071, 267.524 ], "x_axis": [ 0.119, 0.560, -0.820 ], "y_axis": [ 0.537, -0.731, -0.422 ], "z_axis": [ -0.835, -0.390, -0.388 ], "quaternion": [ -0.011, 0.748, 0.367, -0.553 ] } }, { "index": 2643, "index_chain": 2643, "chain_name": "A", "nt_resnum": 2890, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2890", "linked_nts": [ "///A/2889", "///A/2891" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate", "alpha": -71.376, "beta": 168.214, "gamma": 60.977, "delta": 84.784, "epsilon": -142.900, "zeta": 60.120, "epsilon_zeta": 156.980, "bb_type": "--", "chi": -136.515, "glyco_bond": "anti", "C5prime_xyz": [ -1.547, 8.693, -0.864 ], "P_xyz": [ 0.984, 9.021, -1.493 ], "form": ".", "ssZp": 3.371, "Dp": 4.499, "splay_angle": 29.972, "splay_distance": 4.888, "splay_ratio": 0.264, "d22": null, "d64": null, "eta": 169.186, "theta": -10.384, "eta_prime": -175.662, "theta_prime": -54.570, "eta_base": -129.952, "theta_base": -85.877, "v0": -0.433, "v1": -20.118, "v2": 31.811, "v3": -32.927, "v4": 21.104, "amplitude": 33.711, "phase_angle": 19.331, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.804, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 203.380, 142.680, 265.806 ], "x_axis": [ 0.403, 0.092, -0.911 ], "y_axis": [ 0.124, -0.991, -0.046 ], "z_axis": [ -0.907, -0.094, -0.411 ], "quaternion": [ 0.014, 0.837, 0.064, -0.543 ] } }, { "index": 2644, "index_chain": 2644, "chain_name": "A", "nt_resnum": 2891, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2891", "linked_nts": [ "///A/2890", "///A/2892" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop,splayed-apart", "alpha": 166.951, "beta": 132.871, "gamma": 59.710, "delta": 148.056, "epsilon": -93.461, "zeta": 135.886, "epsilon_zeta": 130.653, "bb_type": "BII", "chi": -136.327, "glyco_bond": "anti", "C5prime_xyz": [ -1.985, 8.749, -0.321 ], "P_xyz": [ 0.589, 8.719, 0.144 ], "form": ".", "ssZp": 0.671, "Dp": 0.714, "splay_angle": 89.850, "splay_distance": 14.673, "splay_ratio": 0.707, "d22": null, "d64": null, "eta": 55.759, "theta": -176.733, "eta_prime": 129.501, "theta_prime": 146.603, "eta_base": 138.416, "theta_base": 168.070, "v0": -23.136, "v1": 37.563, "v2": -36.790, "v3": 24.401, "v4": -1.006, "amplitude": 38.536, "phase_angle": 162.689, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "5z", "suiteness": 0.737, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 202.178, 140.559, 261.570 ], "x_axis": [ -0.375, 0.511, 0.773 ], "y_axis": [ -0.190, -0.859, 0.476 ], "z_axis": [ 0.907, 0.032, 0.419 ], "quaternion": [ 0.215, 0.516, 0.156, 0.814 ] } }, { "index": 2645, "index_chain": 2645, "chain_name": "A", "nt_resnum": 2892, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2892", "linked_nts": [ "///A/2891", "///A/2893" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart", "alpha": 95.949, "beta": -131.653, "gamma": -63.332, "delta": 145.307, "epsilon": -147.537, "zeta": 141.676, "epsilon_zeta": 70.787, "bb_type": "--", "chi": -80.226, "glyco_bond": "anti", "C5prime_xyz": [ -2.773, 7.413, -2.776 ], "P_xyz": [ -3.689, 9.049, -4.607 ], "form": ".", "ssZp": 1.445, "Dp": 1.910, "splay_angle": 65.174, "splay_distance": 10.176, "splay_ratio": 0.543, "d22": null, "d64": null, "eta": -38.058, "theta": 62.824, "eta_prime": -58.022, "theta_prime": 77.671, "eta_base": -74.337, "theta_base": 113.821, "v0": -21.865, "v1": 35.213, "v2": -34.343, "v3": 22.585, "v4": -0.641, "amplitude": 36.061, "phase_angle": 162.241, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 206.490, 132.073, 250.403 ], "x_axis": [ 0.328, -0.866, -0.378 ], "y_axis": [ -0.566, -0.500, 0.655 ], "z_axis": [ -0.757, -0.001, -0.654 ], "quaternion": [ 0.208, 0.788, -0.454, -0.360 ] } }, { "index": 2646, "index_chain": 2646, "chain_name": "A", "nt_resnum": 2893, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2893", "linked_nts": [ "///A/2892", "///A/2894" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate", "alpha": -88.465, "beta": 151.388, "gamma": 49.891, "delta": 83.664, "epsilon": -118.350, "zeta": -89.448, "epsilon_zeta": -28.902, "bb_type": "--", "chi": 175.800, "glyco_bond": "anti", "C5prime_xyz": [ -1.463, 8.229, 1.907 ], "P_xyz": [ 1.098, 8.125, 2.451 ], "form": "A", "ssZp": 4.680, "Dp": 4.709, "splay_angle": 23.389, "splay_distance": 3.613, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 172.501, "theta": -127.928, "eta_prime": 164.129, "theta_prime": -124.491, "eta_base": 178.878, "theta_base": -82.711, "v0": 3.331, "v1": -24.339, "v2": 34.899, "v3": -33.973, "v4": 19.343, "amplitude": 35.880, "phase_angle": 13.429, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "0a", "suiteness": 0.792, "filter_rmsd": 0.043, "frame": { "rmsd": 0.011, "origin": [ 200.317, 139.538, 253.519 ], "x_axis": [ 0.323, -0.562, -0.762 ], "y_axis": [ 0.057, -0.792, 0.608 ], "z_axis": [ -0.945, -0.239, -0.224 ], "quaternion": [ 0.277, 0.765, -0.165, -0.558 ] } }, { "index": 2647, "index_chain": 2647, "chain_name": "A", "nt_resnum": 2894, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2894", "linked_nts": [ "///A/2893", "///A/2895" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -47.467, "beta": 145.575, "gamma": 53.819, "delta": 83.284, "epsilon": -150.098, "zeta": -69.659, "epsilon_zeta": -80.439, "bb_type": "BI", "chi": -168.390, "glyco_bond": "anti", "C5prime_xyz": [ -1.685, 8.718, 1.016 ], "P_xyz": [ 0.918, 8.928, 1.130 ], "form": "A", "ssZp": 4.380, "Dp": 4.473, "splay_angle": 19.125, "splay_distance": 3.094, "splay_ratio": 0.168, "d22": null, "d64": null, "eta": 161.181, "theta": -135.153, "eta_prime": -174.469, "theta_prime": -138.866, "eta_base": -109.579, "theta_base": -103.501, "v0": -1.178, "v1": -20.433, "v2": 33.034, "v3": -34.603, "v4": 22.576, "amplitude": 35.257, "phase_angle": 20.457, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.818, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 198.088, 138.155, 251.034 ], "x_axis": [ 0.279, -0.954, -0.107 ], "y_axis": [ -0.248, -0.179, 0.952 ], "z_axis": [ -0.928, -0.239, -0.286 ], "quaternion": [ 0.451, 0.660, -0.455, -0.392 ] } }, { "index": 2648, "index_chain": 2648, "chain_name": "A", "nt_resnum": 2895, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2895", "linked_nts": [ "///A/2894", "///A/2896" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -61.189, "beta": 173.828, "gamma": 49.476, "delta": 83.177, "epsilon": -166.648, "zeta": -84.075, "epsilon_zeta": -82.574, "bb_type": "BI", "chi": -150.755, "glyco_bond": "anti", "C5prime_xyz": [ -1.362, 8.850, -0.016 ], "P_xyz": [ 1.187, 9.365, 0.262 ], "form": ".", "ssZp": 4.014, "Dp": 4.323, "splay_angle": 25.154, "splay_distance": 4.131, "splay_ratio": 0.218, "d22": 4.317, "d64": 4.507, "eta": 166.583, "theta": -130.402, "eta_prime": -175.612, "theta_prime": -135.549, "eta_base": -120.711, "theta_base": -104.545, "v0": -1.714, "v1": -19.519, "v2": 32.108, "v3": -34.017, "v4": 22.556, "amplitude": 34.490, "phase_angle": 21.421, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.952, "filter_rmsd": 0.061, "frame": { "rmsd": 0.008, "origin": [ 196.249, 136.413, 249.258 ], "x_axis": [ 0.034, -0.845, 0.534 ], "y_axis": [ -0.511, 0.445, 0.736 ], "z_axis": [ -0.859, -0.298, -0.416 ], "quaternion": [ 0.515, 0.501, -0.676, -0.162 ] } }, { "index": 2649, "index_chain": 2649, "chain_name": "A", "nt_resnum": 2896, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2896", "linked_nts": [ "///A/2895", "///A/2897" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": 159.553, "beta": -140.818, "gamma": 161.792, "delta": 79.523, "epsilon": -101.924, "zeta": -162.745, "epsilon_zeta": 60.822, "bb_type": "BII", "chi": -168.315, "glyco_bond": "anti", "C5prime_xyz": [ -1.405, 8.628, 1.022 ], "P_xyz": [ 0.480, 9.589, -0.497 ], "form": ".", "ssZp": 4.353, "Dp": 4.726, "splay_angle": 87.980, "splay_distance": 12.945, "splay_ratio": 0.695, "d22": null, "d64": null, "eta": 168.147, "theta": 125.846, "eta_prime": -175.185, "theta_prime": 138.812, "eta_base": -128.565, "theta_base": 117.665, "v0": 2.296, "v1": -25.333, "v2": 37.590, "v3": -37.318, "v4": 22.036, "amplitude": 38.977, "phase_angle": 15.335, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.379, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 193.363, 133.615, 248.309 ], "x_axis": [ -0.265, -0.456, 0.850 ], "y_axis": [ -0.512, 0.813, 0.276 ], "z_axis": [ -0.817, -0.362, -0.449 ], "quaternion": [ 0.524, 0.304, -0.795, 0.027 ] } }, { "index": 2650, "index_chain": 2650, "chain_name": "A", "nt_resnum": 2897, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2897", "linked_nts": [ "///A/2896", "///A/2898" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor,splayed-apart", "alpha": -90.261, "beta": 173.989, "gamma": 14.032, "delta": 80.482, "epsilon": -147.872, "zeta": -38.172, "epsilon_zeta": -109.700, "bb_type": "BI", "chi": -94.529, "glyco_bond": "anti", "C5prime_xyz": [ -2.451, 7.561, -2.832 ], "P_xyz": [ -0.417, 8.409, -4.222 ], "form": ".", "ssZp": 0.562, "Dp": 4.598, "splay_angle": 32.718, "splay_distance": 5.547, "splay_ratio": 0.282, "d22": null, "d64": null, "eta": 153.583, "theta": -145.051, "eta_prime": 131.121, "theta_prime": -163.606, "eta_base": 107.966, "theta_base": 158.551, "v0": -0.841, "v1": -21.967, "v2": 35.051, "v3": -36.539, "v4": 23.569, "amplitude": 37.269, "phase_angle": 19.868, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 191.528, 142.039, 238.653 ], "x_axis": [ 0.649, -0.752, 0.117 ], "y_axis": [ -0.703, -0.534, 0.469 ], "z_axis": [ -0.290, -0.386, -0.876 ], "quaternion": [ 0.244, 0.874, -0.416, -0.049 ] } }, { "index": 2651, "index_chain": 2651, "chain_name": "A", "nt_resnum": 2898, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2898", "linked_nts": [ "///A/2897", "///A/2899" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart", "alpha": -135.400, "beta": 88.950, "gamma": 157.401, "delta": 81.821, "epsilon": -163.114, "zeta": 70.394, "epsilon_zeta": 126.492, "bb_type": "--", "chi": -110.425, "glyco_bond": "anti", "C5prime_xyz": [ -2.318, 8.123, -2.191 ], "P_xyz": [ -3.871, 7.735, -4.256 ], "form": ".", "ssZp": 2.143, "Dp": 4.376, "splay_angle": 103.538, "splay_distance": 15.595, "splay_ratio": 0.786, "d22": null, "d64": null, "eta": 176.123, "theta": -71.288, "eta_prime": 163.263, "theta_prime": -64.219, "eta_base": 132.909, "theta_base": -45.976, "v0": -2.999, "v1": -19.001, "v2": 32.353, "v3": -35.035, "v4": 24.055, "amplitude": 35.252, "phase_angle": 23.400, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.066, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 187.539, 141.379, 234.856 ], "x_axis": [ 0.915, -0.338, -0.220 ], "y_axis": [ -0.224, -0.880, 0.419 ], "z_axis": [ -0.335, -0.334, -0.881 ], "quaternion": [ 0.196, 0.959, -0.146, -0.145 ] } }, { "index": 2652, "index_chain": 2652, "chain_name": "A", "nt_resnum": 2899, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2899", "linked_nts": [ "///A/2898", "///A/2900" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end,coaxial-stack,internal-loop,splayed-apart", "alpha": -151.257, "beta": -151.260, "gamma": 50.188, "delta": 79.503, "epsilon": -159.582, "zeta": -73.579, "epsilon_zeta": -86.003, "bb_type": "BI", "chi": -163.843, "glyco_bond": "anti", "C5prime_xyz": [ -1.698, 8.849, 0.692 ], "P_xyz": [ 0.447, 9.651, 1.949 ], "form": ".", "ssZp": 4.409, "Dp": 4.475, "splay_angle": 30.475, "splay_distance": 4.811, "splay_ratio": 0.264, "d22": null, "d64": null, "eta": 128.911, "theta": -159.885, "eta_prime": 169.139, "theta_prime": -153.554, "eta_base": -157.102, "theta_base": -126.892, "v0": -3.035, "v1": -20.185, "v2": 34.356, "v3": -37.052, "v4": 25.292, "amplitude": 37.363, "phase_angle": 23.144, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.058, "frame": { "rmsd": 0.007, "origin": [ 187.293, 130.172, 245.698 ], "x_axis": [ -0.297, 0.865, 0.405 ], "y_axis": [ -0.274, 0.329, -0.904 ], "z_axis": [ -0.915, -0.379, 0.139 ], "quaternion": [ 0.541, -0.242, -0.610, 0.526 ] } }, { "index": 2653, "index_chain": 2653, "chain_name": "A", "nt_resnum": 2900, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2900", "linked_nts": [ "///A/2899", "///A/2901" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -70.275, "beta": -179.802, "gamma": 61.942, "delta": 83.510, "epsilon": -151.851, "zeta": -67.357, "epsilon_zeta": -84.494, "bb_type": "BI", "chi": -175.881, "glyco_bond": "anti", "C5prime_xyz": [ -1.656, 8.594, 1.398 ], "P_xyz": [ 0.766, 9.026, 2.303 ], "form": "A", "ssZp": 4.365, "Dp": 4.424, "splay_angle": 22.385, "splay_distance": 3.689, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": 177.447, "theta": -141.082, "eta_prime": -173.209, "theta_prime": -141.681, "eta_base": -141.608, "theta_base": -118.980, "v0": -3.281, "v1": -18.122, "v2": 31.306, "v3": -34.099, "v4": 23.589, "amplitude": 34.262, "phase_angle": 23.975, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.806, "filter_rmsd": 0.042, "frame": { "rmsd": 0.011, "origin": [ 183.654, 127.966, 247.942 ], "x_axis": [ -0.134, 0.988, -0.078 ], "y_axis": [ 0.121, -0.062, -0.991 ], "z_axis": [ -0.984, -0.142, -0.111 ], "quaternion": [ -0.416, 0.510, 0.544, -0.521 ] } }, { "index": 2654, "index_chain": 2654, "chain_name": "A", "nt_resnum": 2901, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2901", "linked_nts": [ "///A/2900", "///A/2902" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -73.763, "beta": -177.983, "gamma": 50.241, "delta": 80.138, "epsilon": 177.092, "zeta": -83.938, "epsilon_zeta": -98.970, "bb_type": "BI", "chi": -163.134, "glyco_bond": "anti", "C5prime_xyz": [ -1.600, 8.824, 0.668 ], "P_xyz": [ 0.831, 9.559, 1.297 ], "form": "A", "ssZp": 4.263, "Dp": 4.276, "splay_angle": 22.245, "splay_distance": 3.477, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 160.250, "theta": -147.351, "eta_prime": 177.214, "theta_prime": -149.881, "eta_base": -142.131, "theta_base": -117.677, "v0": -2.059, "v1": -20.680, "v2": 34.217, "v3": -36.355, "v4": 24.220, "amplitude": 36.833, "phase_angle": 21.722, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.899, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 180.360, 127.949, 249.603 ], "x_axis": [ -0.013, 0.799, -0.601 ], "y_axis": [ 0.170, -0.591, -0.789 ], "z_axis": [ -0.985, -0.112, -0.128 ], "quaternion": [ -0.259, 0.653, 0.371, -0.607 ] } }, { "index": 2655, "index_chain": 2655, "chain_name": "A", "nt_resnum": 2902, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2902", "linked_nts": [ "///A/2901", "///A/2903" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 174.507, "beta": -136.719, "gamma": 146.830, "delta": 82.482, "epsilon": -123.416, "zeta": -76.125, "epsilon_zeta": -47.291, "bb_type": "--", "chi": 175.187, "glyco_bond": "anti", "C5prime_xyz": [ -1.724, 8.321, 1.894 ], "P_xyz": [ 0.728, 9.037, 1.327 ], "form": ".", "ssZp": 4.557, "Dp": 4.615, "splay_angle": 23.433, "splay_distance": 3.635, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 167.058, "theta": -130.919, "eta_prime": -178.047, "theta_prime": -134.398, "eta_base": -130.727, "theta_base": -84.289, "v0": -0.259, "v1": -21.220, "v2": 33.360, "v3": -34.477, "v4": 21.895, "amplitude": 35.288, "phase_angle": 19.029, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.042, "frame": { "rmsd": 0.010, "origin": [ 177.033, 128.932, 249.831 ], "x_axis": [ 0.106, 0.337, -0.935 ], "y_axis": [ 0.169, -0.933, -0.317 ], "z_axis": [ -0.980, -0.124, -0.155 ], "quaternion": [ -0.065, 0.741, 0.171, -0.647 ] } }, { "index": 2656, "index_chain": 2656, "chain_name": "A", "nt_resnum": 2903, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2903", "linked_nts": [ "///A/2902", "///A/2904" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -63.614, "beta": 160.621, "gamma": 53.034, "delta": 82.833, "epsilon": -122.860, "zeta": -91.943, "epsilon_zeta": -30.916, "bb_type": "--", "chi": -164.071, "glyco_bond": "anti", "C5prime_xyz": [ -1.366, 8.671, 0.768 ], "P_xyz": [ 1.238, 8.940, 0.887 ], "form": ".", "ssZp": 4.379, "Dp": 4.680, "splay_angle": 69.289, "splay_distance": 9.220, "splay_ratio": 0.585, "d22": null, "d64": null, "eta": 160.561, "theta": -145.302, "eta_prime": -179.207, "theta_prime": -135.080, "eta_base": -108.106, "theta_base": -90.808, "v0": 1.366, "v1": -22.776, "v2": 34.303, "v3": -34.484, "v4": 20.925, "amplitude": 35.776, "phase_angle": 16.498, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.622, "filter_rmsd": 0.103, "frame": { "rmsd": 0.007, "origin": [ 174.457, 129.346, 247.300 ], "x_axis": [ 0.211, -0.537, -0.817 ], "y_axis": [ -0.072, -0.842, 0.535 ], "z_axis": [ -0.975, -0.054, -0.216 ], "quaternion": [ 0.195, 0.753, -0.202, -0.595 ] } }, { "index": 2657, "index_chain": 2657, "chain_name": "A", "nt_resnum": 2904, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2904", "linked_nts": [ "///A/2903", "///A/2905" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,BII,non-pair-contact,bulge,phosphate", "alpha": -105.060, "beta": 156.690, "gamma": 147.796, "delta": 150.709, "epsilon": -87.431, "zeta": 139.827, "epsilon_zeta": 132.742, "bb_type": "BII", "chi": 57.796, "glyco_bond": "syn", "C5prime_xyz": [ -5.350, 3.890, 1.081 ], "P_xyz": [ -5.509, 2.016, 2.907 ], "form": ".", "ssZp": -0.437, "Dp": 0.486, "splay_angle": 64.585, "splay_distance": 10.136, "splay_ratio": 0.537, "d22": null, "d64": null, "eta": -86.230, "theta": 99.459, "eta_prime": -101.398, "theta_prime": 105.662, "eta_base": -89.726, "theta_base": 97.435, "v0": -22.291, "v1": 37.825, "v2": -37.963, "v3": 26.105, "v4": -2.622, "amplitude": 39.309, "phase_angle": 164.963, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.041, "frame": { "rmsd": 0.013, "origin": [ 166.984, 124.002, 246.523 ], "x_axis": [ 0.126, 0.312, -0.942 ], "y_axis": [ -0.062, 0.950, 0.307 ], "z_axis": [ 0.990, 0.019, 0.139 ], "quaternion": [ 0.744, 0.097, 0.649, 0.126 ] } }, { "index": 2658, "index_chain": 2658, "chain_name": "A", "nt_resnum": 2905, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2905", "linked_nts": [ "///A/2904", "///A/2906" ], "nt_type": "RNA", "dbn": ")", "summary": "turn,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": 165.586, "beta": -165.971, "gamma": 54.268, "delta": 84.855, "epsilon": -143.109, "zeta": -73.975, "epsilon_zeta": -69.133, "bb_type": "BI", "chi": 173.882, "glyco_bond": "anti", "C5prime_xyz": [ -1.426, 8.304, 2.015 ], "P_xyz": [ 0.642, 8.069, 3.621 ], "form": "A", "ssZp": 4.371, "Dp": 4.516, "splay_angle": 23.914, "splay_distance": 3.753, "splay_ratio": 0.209, "d22": 5.021, "d64": 4.721, "eta": 114.711, "theta": -140.085, "eta_prime": 101.089, "theta_prime": -134.883, "eta_base": 131.512, "theta_base": -115.474, "v0": 1.345, "v1": -21.581, "v2": 32.442, "v3": -32.584, "v4": 19.721, "amplitude": 33.818, "phase_angle": 16.396, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "4g", "suiteness": 0.036, "filter_rmsd": 0.068, "frame": { "rmsd": 0.010, "origin": [ 171.237, 132.919, 248.787 ], "x_axis": [ 0.224, -0.957, -0.185 ], "y_axis": [ -0.345, -0.255, 0.903 ], "z_axis": [ -0.912, -0.139, -0.387 ], "quaternion": [ 0.382, 0.683, -0.476, -0.401 ] } }, { "index": 2659, "index_chain": 2659, "chain_name": "A", "nt_resnum": 2906, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2906", "linked_nts": [ "///A/2905", "///A/2907" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -72.831, "beta": -171.292, "gamma": 49.090, "delta": 85.552, "epsilon": -153.870, "zeta": -68.114, "epsilon_zeta": -85.756, "bb_type": "BI", "chi": -159.818, "glyco_bond": "anti", "C5prime_xyz": [ -1.262, 8.689, 0.557 ], "P_xyz": [ 1.164, 9.039, 1.467 ], "form": "A", "ssZp": 4.245, "Dp": 4.458, "splay_angle": 20.132, "splay_distance": 3.330, "splay_ratio": 0.177, "d22": null, "d64": null, "eta": 167.312, "theta": -142.270, "eta_prime": 179.179, "theta_prime": -141.632, "eta_base": -151.879, "theta_base": -122.947, "v0": 1.543, "v1": -21.797, "v2": 32.594, "v3": -32.614, "v4": 19.650, "amplitude": 33.922, "phase_angle": 16.084, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.820, "filter_rmsd": 0.102, "frame": { "rmsd": 0.008, "origin": [ 169.060, 133.506, 245.786 ], "x_axis": [ 0.060, -0.931, 0.361 ], "y_axis": [ -0.403, 0.308, 0.862 ], "z_axis": [ -0.913, -0.197, -0.356 ], "quaternion": [ 0.503, 0.526, -0.633, -0.262 ] } }, { "index": 2660, "index_chain": 2660, "chain_name": "A", "nt_resnum": 2907, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2907", "linked_nts": [ "///A/2906", "///A/2908" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -65.128, "beta": 175.857, "gamma": 47.221, "delta": 78.850, "epsilon": -160.314, "zeta": -69.778, "epsilon_zeta": -90.537, "bb_type": "BI", "chi": -152.944, "glyco_bond": "anti", "C5prime_xyz": [ -1.607, 8.841, 0.067 ], "P_xyz": [ 0.872, 9.628, 0.315 ], "form": ".", "ssZp": 4.169, "Dp": 4.482, "splay_angle": 25.595, "splay_distance": 4.669, "splay_ratio": 0.236, "d22": null, "d64": null, "eta": 162.905, "theta": -130.120, "eta_prime": 177.226, "theta_prime": -141.020, "eta_base": -149.958, "theta_base": -135.961, "v0": -2.013, "v1": -21.366, "v2": 35.344, "v3": -37.479, "v4": 24.905, "amplitude": 38.009, "phase_angle": 21.583, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.885, "filter_rmsd": 0.045, "frame": { "rmsd": 0.009, "origin": [ 167.000, 132.245, 243.494 ], "x_axis": [ -0.058, -0.659, 0.750 ], "y_axis": [ -0.484, 0.676, 0.556 ], "z_axis": [ -0.873, -0.330, -0.358 ], "quaternion": [ 0.561, 0.395, -0.723, -0.078 ] } }, { "index": 2661, "index_chain": 2661, "chain_name": "A", "nt_resnum": 2908, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2908", "linked_nts": [ "///A/2907", "///A/2909" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,A-minor,phosphate,splayed-apart", "alpha": 157.584, "beta": -179.578, "gamma": -175.913, "delta": 81.143, "epsilon": -129.690, "zeta": 70.418, "epsilon_zeta": 159.892, "bb_type": "--", "chi": -158.495, "glyco_bond": "anti", "C5prime_xyz": [ -1.377, 8.727, 0.414 ], "P_xyz": [ -0.573, 10.644, -1.179 ], "form": ".", "ssZp": 4.270, "Dp": 4.697, "splay_angle": 148.203, "splay_distance": 17.760, "splay_ratio": 0.962, "d22": null, "d64": null, "eta": 167.906, "theta": -33.469, "eta_prime": 175.860, "theta_prime": -24.558, "eta_base": -166.774, "theta_base": -24.346, "v0": 1.376, "v1": -24.076, "v2": 36.357, "v3": -36.595, "v4": 22.214, "amplitude": 37.938, "phase_angle": 16.600, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.872, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 164.874, 128.849, 241.096 ], "x_axis": [ -0.118, -0.421, 0.899 ], "y_axis": [ -0.566, 0.773, 0.288 ], "z_axis": [ -0.816, -0.475, -0.330 ], "quaternion": [ 0.576, 0.331, -0.745, 0.063 ] } }, { "index": 2662, "index_chain": 2662, "chain_name": "A", "nt_resnum": 2909, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2909", "linked_nts": [ "///A/2908", "///A/2910" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": -95.450, "beta": -153.111, "gamma": 52.919, "delta": 84.264, "epsilon": -162.863, "zeta": -40.951, "epsilon_zeta": -121.912, "bb_type": "BI", "chi": -161.704, "glyco_bond": "anti", "C5prime_xyz": [ -1.327, 8.698, 0.595 ], "P_xyz": [ 1.118, 9.121, 1.466 ], "form": ".", "ssZp": 4.454, "Dp": 4.531, "splay_angle": 35.949, "splay_distance": 5.455, "splay_ratio": 0.309, "d22": 3.312, "d64": 3.915, "eta": -174.256, "theta": -124.473, "eta_prime": -135.962, "theta_prime": -117.903, "eta_base": -93.569, "theta_base": -65.820, "v0": 3.257, "v1": -26.635, "v2": 38.498, "v3": -37.608, "v4": 21.748, "amplitude": 39.670, "phase_angle": 13.965, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.105, "frame": { "rmsd": 0.003, "origin": [ 151.293, 140.147, 242.913 ], "x_axis": [ 0.199, 0.455, -0.868 ], "y_axis": [ 0.739, -0.652, -0.172 ], "z_axis": [ -0.644, -0.607, -0.465 ], "quaternion": [ 0.143, 0.761, 0.392, -0.497 ] } }, { "index": 2663, "index_chain": 2663, "chain_name": "A", "nt_resnum": 2910, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2910", "linked_nts": [ "///A/2909", "///A/2911" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -98.464, "beta": 176.137, "gamma": 79.738, "delta": 88.420, "epsilon": -143.823, "zeta": -54.055, "epsilon_zeta": -89.768, "bb_type": "BI", "chi": -172.921, "glyco_bond": "anti", "C5prime_xyz": [ -1.290, 8.524, 1.299 ], "P_xyz": [ 1.332, 8.779, 1.222 ], "form": ".", "ssZp": 4.561, "Dp": 4.576, "splay_angle": 42.280, "splay_distance": 7.192, "splay_ratio": 0.371, "d22": null, "d64": null, "eta": 166.622, "theta": -87.522, "eta_prime": -161.220, "theta_prime": -97.257, "eta_base": -84.405, "theta_base": -75.057, "v0": 4.571, "v1": -25.318, "v2": 35.131, "v3": -33.567, "v4": 18.366, "amplitude": 35.854, "phase_angle": 11.524, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.010, "filter_rmsd": 0.063, "frame": { "rmsd": 0.001, "origin": [ 151.055, 139.082, 237.569 ], "x_axis": [ 0.748, -0.344, -0.567 ], "y_axis": [ 0.187, -0.710, 0.679 ], "z_axis": [ -0.636, -0.614, -0.467 ], "quaternion": [ 0.378, 0.855, -0.046, -0.352 ] } }, { "index": 2664, "index_chain": 2664, "chain_name": "A", "nt_resnum": 2911, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2911", "linked_nts": [ "///A/2910", "///A/2912" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": 150.666, "beta": -163.891, "gamma": -170.484, "delta": 86.194, "epsilon": -143.148, "zeta": -79.651, "epsilon_zeta": -63.498, "bb_type": "BI", "chi": -174.578, "glyco_bond": "anti", "C5prime_xyz": [ -1.424, 8.521, 1.366 ], "P_xyz": [ -0.232, 10.585, 0.243 ], "form": "A", "ssZp": 4.620, "Dp": 4.626, "splay_angle": 21.256, "splay_distance": 3.298, "splay_ratio": 0.186, "d22": null, "d64": null, "eta": 172.909, "theta": -178.136, "eta_prime": -156.991, "theta_prime": -169.535, "eta_base": -99.474, "theta_base": -129.606, "v0": 3.716, "v1": -25.564, "v2": 36.338, "v3": -35.245, "v4": 19.962, "amplitude": 37.302, "phase_angle": 13.052, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.541, "filter_rmsd": 0.002, "frame": { "rmsd": 0.002, "origin": [ 151.745, 133.862, 232.670 ], "x_axis": [ 0.488, -0.863, 0.132 ], "y_axis": [ -0.441, -0.114, 0.890 ], "z_axis": [ -0.753, -0.493, -0.436 ], "quaternion": [ 0.484, 0.714, -0.457, -0.218 ] } }, { "index": 2665, "index_chain": 2665, "chain_name": "A", "nt_resnum": 2912, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2912", "linked_nts": [ "///A/2911", "///A/2913" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -61.367, "beta": 154.995, "gamma": 64.267, "delta": 83.763, "epsilon": -137.961, "zeta": -84.013, "epsilon_zeta": -53.948, "bb_type": "BI", "chi": -173.380, "glyco_bond": "anti", "C5prime_xyz": [ -1.609, 8.581, 1.288 ], "P_xyz": [ 0.986, 8.915, 1.377 ], "form": "A", "ssZp": 4.500, "Dp": 4.559, "splay_angle": 24.643, "splay_distance": 3.911, "splay_ratio": 0.214, "d22": null, "d64": null, "eta": 170.900, "theta": -144.115, "eta_prime": -170.911, "theta_prime": -145.857, "eta_base": -119.936, "theta_base": -126.312, "v0": -0.656, "v1": -20.491, "v2": 32.568, "v3": -33.894, "v4": 21.825, "amplitude": 34.593, "phase_angle": 19.697, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.671, "filter_rmsd": 0.041, "frame": { "rmsd": 0.007, "origin": [ 150.583, 131.703, 230.463 ], "x_axis": [ 0.092, -0.793, 0.602 ], "y_axis": [ -0.668, 0.399, 0.629 ], "z_axis": [ -0.739, -0.460, -0.493 ], "quaternion": [ -0.500, -0.544, 0.671, 0.063 ] } }, { "index": 2666, "index_chain": 2666, "chain_name": "A", "nt_resnum": 2913, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2913", "linked_nts": [ "///A/2912", "///A/2914" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -67.848, "beta": 163.881, "gamma": 61.373, "delta": 81.504, "epsilon": -156.520, "zeta": -73.257, "epsilon_zeta": -83.263, "bb_type": "BI", "chi": -164.423, "glyco_bond": "anti", "C5prime_xyz": [ -1.515, 8.725, 0.765 ], "P_xyz": [ 1.058, 9.213, 0.734 ], "form": "A", "ssZp": 4.445, "Dp": 4.527, "splay_angle": 24.981, "splay_distance": 3.965, "splay_ratio": 0.218, "d22": 4.516, "d64": 4.819, "eta": 165.354, "theta": -149.413, "eta_prime": 179.946, "theta_prime": -150.591, "eta_base": -143.888, "theta_base": -128.020, "v0": -0.287, "v1": -21.766, "v2": 34.204, "v3": -35.333, "v4": 22.474, "amplitude": 36.183, "phase_angle": 19.040, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.771, "filter_rmsd": 0.099, "frame": { "rmsd": 0.007, "origin": [ 149.074, 129.344, 227.734 ], "x_axis": [ -0.258, -0.465, 0.847 ], "y_axis": [ -0.637, 0.741, 0.213 ], "z_axis": [ -0.726, -0.485, -0.487 ], "quaternion": [ -0.499, -0.350, 0.788, -0.086 ] } }, { "index": 2667, "index_chain": 2667, "chain_name": "A", "nt_resnum": 2914, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2914", "linked_nts": [ "///A/2913", "///A/2915" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -66.550, "beta": 169.362, "gamma": 63.542, "delta": 83.119, "epsilon": -150.927, "zeta": -55.403, "epsilon_zeta": -95.524, "bb_type": "BI", "chi": -165.725, "glyco_bond": "anti", "C5prime_xyz": [ -1.548, 8.772, 0.848 ], "P_xyz": [ 1.030, 9.233, 1.010 ], "form": ".", "ssZp": 4.425, "Dp": 4.511, "splay_angle": 29.036, "splay_distance": 4.531, "splay_ratio": 0.251, "d22": null, "d64": null, "eta": 174.103, "theta": -127.806, "eta_prime": -171.506, "theta_prime": -128.762, "eta_base": -134.287, "theta_base": -79.052, "v0": -0.852, "v1": -21.040, "v2": 33.565, "v3": -34.969, "v4": 22.591, "amplitude": 35.694, "phase_angle": 19.889, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.793, "filter_rmsd": 0.062, "frame": { "rmsd": 0.007, "origin": [ 147.378, 126.202, 226.008 ], "x_axis": [ -0.549, -0.031, 0.836 ], "y_axis": [ -0.407, 0.883, -0.235 ], "z_axis": [ -0.730, -0.469, -0.497 ], "quaternion": [ -0.458, -0.128, 0.856, -0.206 ] } }, { "index": 2668, "index_chain": 2668, "chain_name": "A", "nt_resnum": 2915, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2915", "linked_nts": [ "///A/2914", "///A/2916" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop", "alpha": -91.204, "beta": 170.802, "gamma": 72.857, "delta": 83.202, "epsilon": -102.576, "zeta": -124.236, "epsilon_zeta": 21.660, "bb_type": "--", "chi": -168.107, "glyco_bond": "anti", "C5prime_xyz": [ -1.354, 8.598, 1.002 ], "P_xyz": [ 1.230, 8.952, 0.779 ], "form": ".", "ssZp": 4.398, "Dp": 4.745, "splay_angle": 56.255, "splay_distance": 9.112, "splay_ratio": 0.473, "d22": null, "d64": null, "eta": 169.876, "theta": -169.166, "eta_prime": -169.774, "theta_prime": -154.188, "eta_base": -101.363, "theta_base": -162.139, "v0": 3.950, "v1": -25.350, "v2": 35.885, "v3": -34.571, "v4": 19.349, "amplitude": 36.765, "phase_angle": 12.568, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.212, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 143.017, 125.113, 226.577 ], "x_axis": [ -0.638, 0.700, 0.320 ], "y_axis": [ 0.176, 0.538, -0.825 ], "z_axis": [ -0.749, -0.470, -0.466 ], "quaternion": [ -0.329, 0.269, 0.813, -0.398 ] } }, { "index": 2669, "index_chain": 2669, "chain_name": "A", "nt_resnum": 2916, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2916", "linked_nts": [ "///A/2915", "///A/2917" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop", "alpha": -93.795, "beta": 179.070, "gamma": 66.713, "delta": 77.749, "epsilon": 174.224, "zeta": -80.753, "epsilon_zeta": -105.024, "bb_type": "BI", "chi": -135.038, "glyco_bond": "anti", "C5prime_xyz": [ -2.306, 8.739, -1.022 ], "P_xyz": [ -0.106, 9.834, -1.900 ], "form": ".", "ssZp": 3.587, "Dp": 4.130, "splay_angle": 23.195, "splay_distance": 3.705, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 173.379, "theta": -151.103, "eta_prime": 165.947, "theta_prime": -146.749, "eta_base": 154.330, "theta_base": -92.852, "v0": -8.124, "v1": -15.815, "v2": 32.159, "v3": -37.808, "v4": 29.001, "amplitude": 37.459, "phase_angle": 30.850, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7a", "suiteness": 0.010, "filter_rmsd": 0.040, "frame": { "rmsd": 0.011, "origin": [ 139.814, 117.457, 222.815 ], "x_axis": [ -0.314, 0.615, 0.723 ], "y_axis": [ 0.119, 0.781, -0.613 ], "z_axis": [ -0.942, -0.107, -0.319 ], "quaternion": [ 0.536, -0.236, -0.777, 0.231 ] } }, { "index": 2670, "index_chain": 2670, "chain_name": "A", "nt_resnum": 2917, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2917", "linked_nts": [ "///A/2916", "///A/2918" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop", "alpha": 177.640, "beta": -141.791, "gamma": 155.884, "delta": 145.646, "epsilon": -110.020, "zeta": 50.310, "epsilon_zeta": 199.670, "bb_type": "--", "chi": -133.206, "glyco_bond": "anti", "C5prime_xyz": [ -1.532, 8.645, -0.461 ], "P_xyz": [ 0.897, 8.553, -1.428 ], "form": ".", "ssZp": 1.358, "Dp": 1.404, "splay_angle": 74.504, "splay_distance": 11.327, "splay_ratio": 0.611, "d22": null, "d64": null, "eta": -161.690, "theta": 65.824, "eta_prime": -137.872, "theta_prime": 48.000, "eta_base": -85.214, "theta_base": 83.480, "v0": -17.742, "v1": 31.821, "v2": -32.986, "v3": 23.564, "v4": -3.852, "amplitude": 33.762, "phase_angle": 167.694, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.178, "filter_rmsd": 0.017, "frame": { "rmsd": 0.017, "origin": [ 136.964, 119.824, 222.859 ], "x_axis": [ 0.213, 0.970, 0.116 ], "y_axis": [ -0.018, 0.123, -0.992 ], "z_axis": [ -0.977, 0.210, 0.043 ], "quaternion": [ 0.587, -0.512, -0.465, 0.421 ] } }, { "index": 2671, "index_chain": 2671, "chain_name": "A", "nt_resnum": 2918, "nt_name": "G", "nt_code": "G", "nt_id": "///A/2918", "linked_nts": [ "///A/2917", "///A/2919" ], "nt_type": "RNA", "dbn": ")", "summary": "~C3'-endo,isolated-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart", "alpha": 120.783, "beta": -144.325, "gamma": -166.397, "delta": 79.546, "epsilon": -162.439, "zeta": 177.223, "epsilon_zeta": 20.338, "bb_type": "--", "chi": -64.388, "glyco_bond": "--", "C5prime_xyz": [ -3.378, 6.232, -3.381 ], "P_xyz": [ -4.801, 4.655, -4.924 ], "form": ".", "ssZp": -1.503, "Dp": 4.535, "splay_angle": 126.624, "splay_distance": 16.837, "splay_ratio": 0.894, "d22": null, "d64": null, "eta": -166.133, "theta": 88.495, "eta_prime": -159.609, "theta_prime": 115.691, "eta_base": -148.013, "theta_base": 165.140, "v0": -0.026, "v1": -23.308, "v2": 36.380, "v3": -37.393, "v4": 23.625, "amplitude": 38.390, "phase_angle": 18.626, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 141.805, 112.555, 215.645 ], "x_axis": [ 0.353, -0.881, -0.315 ], "y_axis": [ -0.328, 0.199, -0.924 ], "z_axis": [ 0.876, 0.429, -0.219 ], "quaternion": [ 0.577, -0.586, 0.516, -0.240 ] } }, { "index": 2672, "index_chain": 2672, "chain_name": "A", "nt_resnum": 2919, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2919", "linked_nts": [ "///A/2918", "///A/2920" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,splayed-apart", "alpha": 34.637, "beta": 152.317, "gamma": 10.538, "delta": 82.746, "epsilon": -148.541, "zeta": -70.169, "epsilon_zeta": -78.372, "bb_type": "BI", "chi": -179.970, "glyco_bond": "anti", "C5prime_xyz": [ -1.338, 8.372, 1.681 ], "P_xyz": [ 0.811, 8.333, 3.190 ], "form": "A", "ssZp": 4.621, "Dp": 4.617, "splay_angle": 24.085, "splay_distance": 3.688, "splay_ratio": 0.211, "d22": null, "d64": null, "eta": -129.977, "theta": -143.273, "eta_prime": -159.264, "theta_prime": -137.077, "eta_base": 160.592, "theta_base": -103.171, "v0": 2.647, "v1": -23.653, "v2": 34.471, "v3": -33.861, "v4": 19.738, "amplitude": 35.594, "phase_angle": 14.430, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.043, "frame": { "rmsd": 0.014, "origin": [ 140.441, 115.691, 199.159 ], "x_axis": [ 0.843, -0.331, 0.424 ], "y_axis": [ -0.346, 0.271, 0.898 ], "z_axis": [ -0.412, -0.904, 0.113 ], "quaternion": [ 0.746, 0.604, -0.280, 0.005 ] } }, { "index": 2673, "index_chain": 2673, "chain_name": "A", "nt_resnum": 2920, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2920", "linked_nts": [ "///A/2919", "///A/2921" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -69.269, "beta": -177.946, "gamma": 51.082, "delta": 83.079, "epsilon": 178.782, "zeta": -84.625, "epsilon_zeta": -96.592, "bb_type": "BI", "chi": -166.631, "glyco_bond": "anti", "C5prime_xyz": [ -1.174, 8.614, 0.958 ], "P_xyz": [ 1.356, 8.767, 1.615 ], "form": "A", "ssZp": 4.332, "Dp": 4.354, "splay_angle": 23.197, "splay_distance": 3.595, "splay_ratio": 0.203, "d22": 4.653, "d64": 4.632, "eta": 163.992, "theta": -146.293, "eta_prime": -177.655, "theta_prime": -148.602, "eta_base": -128.384, "theta_base": -134.509, "v0": 4.295, "v1": -25.461, "v2": 35.860, "v3": -34.324, "v4": 18.937, "amplitude": 36.665, "phase_angle": 12.023, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.950, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 140.363, 112.078, 198.424 ], "x_axis": [ 0.442, -0.060, 0.895 ], "y_axis": [ -0.794, 0.437, 0.422 ], "z_axis": [ -0.416, -0.897, 0.145 ], "quaternion": [ 0.711, 0.464, -0.461, 0.258 ] } }, { "index": 2674, "index_chain": 2674, "chain_name": "A", "nt_resnum": 2921, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2921", "linked_nts": [ "///A/2920", "///A/2922" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": -171.546, "beta": -138.807, "gamma": 138.453, "delta": 80.929, "epsilon": -121.592, "zeta": -93.549, "epsilon_zeta": -28.043, "bb_type": "--", "chi": -178.546, "glyco_bond": "anti", "C5prime_xyz": [ -1.543, 8.523, 1.592 ], "P_xyz": [ 0.984, 8.991, 1.141 ], "form": "A", "ssZp": 4.491, "Dp": 4.589, "splay_angle": 20.079, "splay_distance": 3.206, "splay_ratio": 0.175, "d22": 4.257, "d64": 3.970, "eta": 171.751, "theta": -142.377, "eta_prime": -178.509, "theta_prime": -143.395, "eta_base": -152.708, "theta_base": -117.394, "v0": -0.665, "v1": -21.343, "v2": 34.044, "v3": -35.405, "v4": 22.722, "amplitude": 36.153, "phase_angle": 19.668, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.008, "origin": [ 140.530, 108.592, 197.562 ], "x_axis": [ 0.054, 0.193, 0.980 ], "y_axis": [ -0.922, 0.385, -0.025 ], "z_axis": [ -0.382, -0.902, 0.199 ], "quaternion": [ 0.640, 0.343, -0.532, 0.436 ] } }, { "index": 2675, "index_chain": 2675, "chain_name": "A", "nt_resnum": 2922, "nt_name": "U", "nt_code": "U", "nt_id": "///A/2922", "linked_nts": [ "///A/2921", "///A/2923" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -46.522, "beta": 149.467, "gamma": 48.813, "delta": 82.667, "epsilon": -153.667, "zeta": -75.458, "epsilon_zeta": -78.209, "bb_type": "BI", "chi": -161.250, "glyco_bond": "anti", "C5prime_xyz": [ -1.743, 8.801, 0.556 ], "P_xyz": [ 0.826, 9.227, 0.752 ], "form": "A", "ssZp": 4.220, "Dp": 4.392, "splay_angle": 20.833, "splay_distance": 3.392, "splay_ratio": 0.182, "d22": null, "d64": null, "eta": 162.503, "theta": -145.556, "eta_prime": -179.026, "theta_prime": -148.738, "eta_base": -135.214, "theta_base": -126.364, "v0": -3.834, "v1": -17.913, "v2": 31.508, "v3": -34.653, "v4": 24.290, "amplitude": 34.717, "phase_angle": 24.827, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.306, "filter_rmsd": 0.099, "frame": { "rmsd": 0.010, "origin": [ 140.501, 105.635, 198.803 ], "x_axis": [ -0.444, 0.452, 0.773 ], "y_axis": [ -0.828, 0.123, -0.548 ], "z_axis": [ -0.343, -0.883, 0.320 ], "quaternion": [ 0.500, 0.168, -0.559, 0.640 ] } }, { "index": 2676, "index_chain": 2676, "chain_name": "A", "nt_resnum": 2923, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2923", "linked_nts": [ "///A/2922", "///A/2924" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -63.221, "beta": 168.715, "gamma": 53.047, "delta": 81.218, "epsilon": -153.222, "zeta": -75.518, "epsilon_zeta": -77.704, "bb_type": "BI", "chi": -156.702, "glyco_bond": "anti", "C5prime_xyz": [ -1.699, 8.795, 0.299 ], "P_xyz": [ 0.827, 9.466, 0.414 ], "form": ".", "ssZp": 4.254, "Dp": 4.503, "splay_angle": 23.985, "splay_distance": 3.751, "splay_ratio": 0.208, "d22": null, "d64": null, "eta": 166.295, "theta": -149.507, "eta_prime": 179.580, "theta_prime": -147.948, "eta_base": -142.463, "theta_base": -108.865, "v0": -2.025, "v1": -20.403, "v2": 33.785, "v3": -35.911, "v4": 23.905, "amplitude": 36.369, "phase_angle": 21.728, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.962, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 140.395, 102.870, 200.766 ], "x_axis": [ -0.795, 0.467, 0.387 ], "y_axis": [ -0.517, -0.187, -0.836 ], "z_axis": [ -0.318, -0.864, 0.390 ], "quaternion": [ 0.319, 0.022, -0.552, 0.770 ] } }, { "index": 2677, "index_chain": 2677, "chain_name": "A", "nt_resnum": 2924, "nt_name": "A", "nt_code": "A", "nt_id": "///A/2924", "linked_nts": [ "///A/2923", "///A/2925" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,cap-acceptor", "alpha": -60.924, "beta": 166.832, "gamma": 55.582, "delta": 81.395, "epsilon": -119.337, "zeta": -84.014, "epsilon_zeta": -35.323, "bb_type": "--", "chi": -151.346, "glyco_bond": "anti", "C5prime_xyz": [ -1.222, 8.661, 0.018 ], "P_xyz": [ 1.367, 8.842, -0.344 ], "form": ".", "ssZp": 3.932, "Dp": 4.785, "splay_angle": 22.004, "splay_distance": 4.366, "splay_ratio": 0.212, "d22": null, "d64": null, "eta": 175.997, "theta": -108.322, "eta_prime": -172.279, "theta_prime": -119.120, "eta_base": -123.623, "theta_base": -116.436, "v0": 5.187, "v1": -27.077, "v2": 37.550, "v3": -35.546, "v4": 19.128, "amplitude": 38.249, "phase_angle": 10.974, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.949, "filter_rmsd": 0.041, "frame": { "rmsd": 0.008, "origin": [ 138.285, 100.610, 202.888 ], "x_axis": [ -0.961, 0.186, -0.207 ], "y_axis": [ 0.075, -0.543, -0.836 ], "z_axis": [ -0.268, -0.819, 0.508 ], "quaternion": [ 0.032, -0.137, -0.477, 0.868 ] } }, { "index": 2678, "index_chain": 2678, "chain_name": "A", "nt_resnum": 2925, "nt_name": "C", "nt_code": "C", "nt_id": "///A/2925", "linked_nts": [ "///A/2924", null ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,ss-non-loop,cap-donor", "alpha": 82.718, "beta": -123.733, "gamma": -110.764, "delta": 79.952, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -159.774, "glyco_bond": "anti", "C5prime_xyz": [ -1.277, 8.782, 0.508 ], "P_xyz": [ -1.569, 11.127, -0.635 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": 1.951, "v1": -24.506, "v2": 36.489, "v3": -36.363, "v4": 21.728, "amplitude": 37.909, "phase_angle": 15.732, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.004, "origin": [ 135.204, 99.735, 205.856 ], "x_axis": [ -0.923, 0.044, -0.383 ], "y_axis": [ 0.254, -0.679, -0.689 ], "z_axis": [ -0.290, -0.733, 0.615 ], "quaternion": [ -0.059, -0.188, -0.396, 0.897 ] } }, { "index": 2679, "index_chain": 1, "chain_name": "B", "nt_resnum": 3, "nt_name": "U", "nt_code": "U", "nt_id": "///B/3", "linked_nts": [ null, "///B/4" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,phosphate", "alpha": null, "beta": 175.374, "gamma": 53.089, "delta": 146.755, "epsilon": -160.822, "zeta": -124.194, "epsilon_zeta": -36.628, "bb_type": "BI", "chi": -135.473, "glyco_bond": "anti", "C5prime_xyz": [ -1.585, 8.704, -0.385 ], "P_xyz": [ 0.743, 9.213, 0.715 ], "form": ".", "ssZp": 1.935, "Dp": 2.000, "splay_angle": 25.555, "splay_distance": 4.339, "splay_ratio": 0.223, "d22": null, "d64": null, "eta": null, "theta": -113.313, "eta_prime": null, "theta_prime": -152.161, "eta_base": null, "theta_base": -123.683, "v0": -20.555, "v1": 35.144, "v2": -35.492, "v3": 24.481, "v4": -2.633, "amplitude": 36.688, "phase_angle": 165.335, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.101, "frame": { "rmsd": 0.006, "origin": [ 172.068, 161.754, 67.315 ], "x_axis": [ -0.805, -0.594, -0.002 ], "y_axis": [ 0.593, -0.803, -0.064 ], "z_axis": [ 0.037, -0.052, 0.998 ], "quaternion": [ -0.312, 0.009, -0.031, 0.949 ] } }, { "index": 2680, "index_chain": 2, "chain_name": "B", "nt_resnum": 4, "nt_name": "G", "nt_code": "G", "nt_id": "///B/4", "linked_nts": [ "///B/3", "///B/5" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate", "alpha": 137.588, "beta": -170.823, "gamma": 163.605, "delta": 83.015, "epsilon": -158.004, "zeta": -68.378, "epsilon_zeta": -89.626, "bb_type": "BI", "chi": -179.094, "glyco_bond": "anti", "C5prime_xyz": [ -1.169, 8.340, 1.644 ], "P_xyz": [ 0.664, 9.967, 0.696 ], "form": "A", "ssZp": 4.583, "Dp": 4.604, "splay_angle": 26.023, "splay_distance": 3.974, "splay_ratio": 0.230, "d22": null, "d64": null, "eta": 131.791, "theta": -169.318, "eta_prime": 145.738, "theta_prime": -166.519, "eta_base": -160.060, "theta_base": -146.468, "v0": 6.286, "v1": -27.241, "v2": 36.696, "v3": -34.073, "v4": 17.553, "amplitude": 37.164, "phase_angle": 9.105, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 172.349, 163.585, 71.239 ], "x_axis": [ -0.374, -0.927, 0.018 ], "y_axis": [ 0.879, -0.360, -0.313 ], "z_axis": [ 0.296, -0.101, 0.950 ], "quaternion": [ 0.551, -0.096, 0.126, -0.819 ] } }, { "index": 2681, "index_chain": 3, "chain_name": "B", "nt_resnum": 5, "nt_name": "G", "nt_code": "G", "nt_id": "///B/5", "linked_nts": [ "///B/4", "///B/6" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": -72.170, "beta": -167.957, "gamma": 53.922, "delta": 82.967, "epsilon": -142.129, "zeta": -73.018, "epsilon_zeta": -69.111, "bb_type": "BI", "chi": -166.693, "glyco_bond": "anti", "C5prime_xyz": [ -1.202, 8.628, 0.962 ], "P_xyz": [ 1.269, 8.777, 1.823 ], "form": "A", "ssZp": 4.522, "Dp": 4.656, "splay_angle": 23.491, "splay_distance": 3.651, "splay_ratio": 0.204, "d22": null, "d64": null, "eta": 176.677, "theta": -138.007, "eta_prime": -175.067, "theta_prime": -132.866, "eta_base": -148.874, "theta_base": -92.110, "v0": 4.277, "v1": -25.565, "v2": 36.005, "v3": -34.471, "v4": 19.050, "amplitude": 36.818, "phase_angle": 12.062, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.800, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 171.236, 164.382, 74.970 ], "x_axis": [ 0.108, -0.976, -0.187 ], "y_axis": [ 0.936, 0.163, -0.312 ], "z_axis": [ 0.335, -0.141, 0.932 ], "quaternion": [ 0.742, -0.058, 0.176, -0.644 ] } }, { "index": 2682, "index_chain": 4, "chain_name": "B", "nt_resnum": 6, "nt_name": "U", "nt_code": "U", "nt_id": "///B/6", "linked_nts": [ "///B/5", "///B/7" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem", "alpha": -57.785, "beta": 158.619, "gamma": 60.723, "delta": 85.479, "epsilon": -108.487, "zeta": -100.751, "epsilon_zeta": -7.736, "bb_type": "--", "chi": -167.282, "glyco_bond": "anti", "C5prime_xyz": [ -1.503, 8.644, 0.968 ], "P_xyz": [ 1.100, 8.927, 1.050 ], "form": ".", "ssZp": 4.273, "Dp": 4.579, "splay_angle": 27.179, "splay_distance": 5.035, "splay_ratio": 0.246, "d22": null, "d64": null, "eta": -179.454, "theta": -116.346, "eta_prime": -162.394, "theta_prime": -132.008, "eta_base": -109.402, "theta_base": -133.184, "v0": 0.652, "v1": -20.934, "v2": 32.029, "v3": -32.562, "v4": 20.190, "amplitude": 33.591, "phase_angle": 17.545, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.793, "filter_rmsd": 0.105, "frame": { "rmsd": 0.004, "origin": [ 171.983, 162.060, 77.686 ], "x_axis": [ 0.678, -0.639, -0.364 ], "y_axis": [ 0.662, 0.746, -0.078 ], "z_axis": [ 0.321, -0.188, 0.928 ], "quaternion": [ 0.915, 0.030, 0.187, -0.355 ] } }, { "index": 2683, "index_chain": 5, "chain_name": "B", "nt_resnum": 7, "nt_name": "G", "nt_code": "G", "nt_id": "///B/7", "linked_nts": [ "///B/6", "///B/8" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 70.213, "beta": -135.881, "gamma": -119.798, "delta": 83.557, "epsilon": -168.811, "zeta": -90.387, "epsilon_zeta": -78.424, "bb_type": "BI", "chi": -165.180, "glyco_bond": "anti", "C5prime_xyz": [ -1.079, 8.580, 0.878 ], "P_xyz": [ -0.698, 10.979, -0.090 ], "form": "A", "ssZp": 4.461, "Dp": 4.504, "splay_angle": 22.283, "splay_distance": 3.462, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": 167.415, "theta": 169.307, "eta_prime": 173.119, "theta_prime": -177.785, "eta_base": -168.585, "theta_base": -145.420, "v0": 6.366, "v1": -26.699, "v2": 35.814, "v3": -33.146, "v4": 16.932, "amplitude": 36.238, "phase_angle": 8.774, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 171.457, 159.282, 81.852 ], "x_axis": [ 0.752, -0.417, -0.511 ], "y_axis": [ 0.490, 0.872, 0.010 ], "z_axis": [ 0.441, -0.258, 0.860 ], "quaternion": [ 0.933, 0.072, 0.255, -0.243 ] } }, { "index": 2684, "index_chain": 6, "chain_name": "B", "nt_resnum": 8, "nt_name": "G", "nt_code": "G", "nt_id": "///B/8", "linked_nts": [ "///B/7", "///B/9" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": 176.127, "beta": -135.223, "gamma": 143.992, "delta": 83.004, "epsilon": -90.240, "zeta": -133.058, "epsilon_zeta": 42.818, "bb_type": "--", "chi": 176.345, "glyco_bond": "anti", "C5prime_xyz": [ -1.713, 8.380, 1.849 ], "P_xyz": [ 0.753, 8.999, 1.235 ], "form": "A", "ssZp": 4.454, "Dp": 4.551, "splay_angle": 20.079, "splay_distance": 3.308, "splay_ratio": 0.175, "d22": null, "d64": null, "eta": 173.986, "theta": -128.780, "eta_prime": -175.284, "theta_prime": -138.792, "eta_base": -141.397, "theta_base": -112.547, "v0": 0.483, "v1": -21.983, "v2": 33.881, "v3": -34.566, "v4": 21.494, "amplitude": 35.596, "phase_angle": 17.857, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 172.429, 156.942, 84.212 ], "x_axis": [ 0.813, 0.134, -0.566 ], "y_axis": [ 0.051, 0.953, 0.299 ], "z_axis": [ 0.579, -0.272, 0.768 ], "quaternion": [ 0.940, 0.152, 0.305, 0.022 ] } }, { "index": 2685, "index_chain": 7, "chain_name": "B", "nt_resnum": 9, "nt_name": "C", "nt_code": "C", "nt_id": "///B/9", "linked_nts": [ "///B/8", "///B/10" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart", "alpha": 85.882, "beta": -96.620, "gamma": -166.961, "delta": 83.711, "epsilon": -110.297, "zeta": 20.507, "epsilon_zeta": 229.196, "bb_type": "--", "chi": 170.656, "glyco_bond": "anti", "C5prime_xyz": [ -1.431, 8.194, 2.166 ], "P_xyz": [ 0.085, 9.598, 0.557 ], "form": ".", "ssZp": 4.616, "Dp": 4.664, "splay_angle": 130.457, "splay_distance": 15.034, "splay_ratio": 0.909, "d22": null, "d64": null, "eta": 163.803, "theta": -56.867, "eta_prime": 179.598, "theta_prime": -93.120, "eta_base": -132.634, "theta_base": -166.920, "v0": 2.633, "v1": -23.579, "v2": 34.415, "v3": -33.825, "v4": 19.693, "amplitude": 35.540, "phase_angle": 14.457, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.008, "origin": [ 174.851, 155.213, 85.658 ], "x_axis": [ 0.723, 0.600, -0.344 ], "y_axis": [ -0.310, 0.725, 0.615 ], "z_axis": [ 0.618, -0.338, 0.710 ], "quaternion": [ 0.889, 0.268, 0.271, 0.256 ] } }, { "index": 2686, "index_chain": 8, "chain_name": "B", "nt_resnum": 10, "nt_name": "G", "nt_code": "G", "nt_id": "///B/10", "linked_nts": [ "///B/9", "///B/11" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,junction-loop,splayed-apart", "alpha": -106.483, "beta": -98.362, "gamma": 151.009, "delta": 79.116, "epsilon": -161.969, "zeta": -83.755, "epsilon_zeta": -78.214, "bb_type": "BI", "chi": -103.119, "glyco_bond": "anti", "C5prime_xyz": [ -2.319, 7.969, -2.505 ], "P_xyz": [ -1.485, 6.182, -4.216 ], "form": ".", "ssZp": 1.555, "Dp": 4.469, "splay_angle": 86.977, "splay_distance": 12.916, "splay_ratio": 0.690, "d22": null, "d64": null, "eta": -89.614, "theta": -124.961, "eta_prime": -16.056, "theta_prime": -150.386, "eta_base": 39.794, "theta_base": 162.551, "v0": -2.331, "v1": -20.598, "v2": 34.366, "v3": -36.731, "v4": 24.575, "amplitude": 37.102, "phase_angle": 22.142, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 173.819, 151.181, 100.104 ], "x_axis": [ -0.397, -0.836, -0.378 ], "y_axis": [ 0.330, 0.254, -0.909 ], "z_axis": [ 0.856, -0.486, 0.175 ], "quaternion": [ 0.508, -0.208, 0.608, -0.574 ] } }, { "index": 2687, "index_chain": 9, "chain_name": "B", "nt_resnum": 11, "nt_name": "A", "nt_code": "A", "nt_id": "///B/11", "linked_nts": [ "///B/10", "///B/12" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C3'-endo,BI,non-stack,non-pair-contact,junction-loop,cap-donor,phosphate,splayed-apart", "alpha": -137.276, "beta": -66.202, "gamma": -59.847, "delta": 81.894, "epsilon": -165.893, "zeta": -71.553, "epsilon_zeta": -94.340, "bb_type": "BI", "chi": 37.418, "glyco_bond": "syn", "C5prime_xyz": [ -5.372, 3.311, 0.501 ], "P_xyz": [ -7.771, 4.048, -0.243 ], "form": ".", "ssZp": -3.890, "Dp": 4.445, "splay_angle": 155.479, "splay_distance": 17.806, "splay_ratio": 0.978, "d22": null, "d64": null, "eta": 67.570, "theta": 122.440, "eta_prime": 48.097, "theta_prime": 119.837, "eta_base": 60.245, "theta_base": -169.937, "v0": 0.249, "v1": -21.917, "v2": 33.941, "v3": -34.779, "v4": 21.789, "amplitude": 35.734, "phase_angle": 18.229, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.005, "origin": [ 186.007, 150.606, 95.868 ], "x_axis": [ 0.778, -0.627, 0.022 ], "y_axis": [ -0.222, -0.308, -0.925 ], "z_axis": [ 0.587, 0.715, -0.380 ], "quaternion": [ 0.522, -0.785, 0.271, -0.194 ] } }, { "index": 2688, "index_chain": 10, "chain_name": "B", "nt_resnum": 12, "nt_name": "U", "nt_code": "U", "nt_id": "///B/12", "linked_nts": [ "///B/11", "///B/13" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart", "alpha": -156.876, "beta": 129.172, "gamma": -49.011, "delta": 151.122, "epsilon": -74.489, "zeta": -119.901, "epsilon_zeta": 45.411, "bb_type": "--", "chi": -144.056, "glyco_bond": "anti", "C5prime_xyz": [ -1.623, 8.621, 0.176 ], "P_xyz": [ -1.310, 10.004, 2.384 ], "form": ".", "ssZp": 0.276, "Dp": 0.348, "splay_angle": 64.927, "splay_distance": 9.919, "splay_ratio": 0.543, "d22": null, "d64": null, "eta": -13.388, "theta": -38.451, "eta_prime": -10.358, "theta_prime": -60.110, "eta_base": -97.793, "theta_base": -54.939, "v0": -18.591, "v1": 34.843, "v2": -36.826, "v3": 27.040, "v4": -5.523, "amplitude": 37.445, "phase_angle": 169.566, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.102, "frame": { "rmsd": 0.004, "origin": [ 169.983, 144.379, 91.232 ], "x_axis": [ -0.296, -0.075, 0.952 ], "y_axis": [ 0.910, 0.282, 0.305 ], "z_axis": [ -0.291, 0.957, -0.016 ], "quaternion": [ -0.492, 0.331, 0.631, 0.500 ] } }, { "index": 2689, "index_chain": 11, "chain_name": "B", "nt_resnum": 13, "nt_name": "A", "nt_code": "A", "nt_id": "///B/13", "linked_nts": [ "///B/12", "///B/14" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-pair-contact,junction-loop,cap-donor,cap-acceptor,phosphate,splayed-apart", "alpha": 49.040, "beta": 128.540, "gamma": -67.564, "delta": 149.444, "epsilon": -38.812, "zeta": -156.095, "epsilon_zeta": 117.283, "bb_type": "--", "chi": 47.187, "glyco_bond": "syn", "C5prime_xyz": [ -5.483, 3.772, 0.513 ], "P_xyz": [ -7.581, 3.113, -0.920 ], "form": ".", "ssZp": 0.450, "Dp": 0.589, "splay_angle": 110.434, "splay_distance": 14.700, "splay_ratio": 0.823, "d22": null, "d64": null, "eta": 144.508, "theta": -92.404, "eta_prime": -167.874, "theta_prime": -84.088, "eta_base": -154.348, "theta_base": -31.742, "v0": -23.738, "v1": 38.163, "v2": -37.202, "v3": 24.494, "v4": -0.693, "amplitude": 39.068, "phase_angle": 162.222, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.006, "origin": [ 173.981, 153.427, 90.499 ], "x_axis": [ -0.272, 0.938, 0.215 ], "y_axis": [ 0.789, 0.345, -0.508 ], "z_axis": [ -0.551, 0.031, -0.834 ], "quaternion": [ -0.245, 0.552, 0.783, -0.152 ] } }, { "index": 2690, "index_chain": 12, "chain_name": "B", "nt_resnum": 14, "nt_name": "G", "nt_code": "G", "nt_id": "///B/14", "linked_nts": [ "///B/13", "///B/15" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart", "alpha": -38.560, "beta": 110.809, "gamma": 61.370, "delta": 80.499, "epsilon": -129.190, "zeta": -94.552, "epsilon_zeta": -34.638, "bb_type": "--", "chi": 176.818, "glyco_bond": "anti", "C5prime_xyz": [ -1.475, 8.320, 1.849 ], "P_xyz": [ 1.011, 8.079, 1.081 ], "form": "A", "ssZp": 4.775, "Dp": 4.765, "splay_angle": 24.897, "splay_distance": 3.742, "splay_ratio": 0.217, "d22": null, "d64": null, "eta": 170.077, "theta": -133.064, "eta_prime": -139.762, "theta_prime": -139.679, "eta_base": -143.984, "theta_base": -116.889, "v0": 4.456, "v1": -26.390, "v2": 37.134, "v3": -35.556, "v4": 19.610, "amplitude": 37.965, "phase_angle": 12.013, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 185.858, 145.021, 88.411 ], "x_axis": [ -0.730, -0.577, -0.366 ], "y_axis": [ -0.511, 0.817, -0.268 ], "z_axis": [ 0.454, -0.008, -0.891 ], "quaternion": [ 0.221, -0.293, 0.927, -0.075 ] } }, { "index": 2691, "index_chain": 13, "chain_name": "B", "nt_resnum": 15, "nt_name": "C", "nt_code": "C", "nt_id": "///B/15", "linked_nts": [ "///B/14", "///B/16" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge", "alpha": -39.003, "beta": 154.152, "gamma": 43.721, "delta": 81.279, "epsilon": -133.141, "zeta": -86.519, "epsilon_zeta": -46.621, "bb_type": "BI", "chi": -171.077, "glyco_bond": "anti", "C5prime_xyz": [ -1.313, 8.581, 1.194 ], "P_xyz": [ 1.276, 8.606, 1.553 ], "form": "A", "ssZp": 4.635, "Dp": 4.725, "splay_angle": 26.976, "splay_distance": 4.138, "splay_ratio": 0.233, "d22": null, "d64": null, "eta": 173.109, "theta": -137.537, "eta_prime": -174.136, "theta_prime": -133.352, "eta_base": -128.416, "theta_base": -97.840, "v0": 3.511, "v1": -25.513, "v2": 36.620, "v3": -35.602, "v4": 20.225, "amplitude": 37.642, "phase_angle": 13.377, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.254, "filter_rmsd": 0.063, "frame": { "rmsd": 0.004, "origin": [ 187.295, 143.203, 85.472 ], "x_axis": [ -0.892, 0.066, -0.447 ], "y_axis": [ 0.059, 0.998, 0.028 ], "z_axis": [ 0.448, -0.002, -0.894 ], "quaternion": [ 0.230, 0.032, 0.973, 0.007 ] } }, { "index": 2692, "index_chain": 14, "chain_name": "B", "nt_resnum": 16, "nt_name": "G", "nt_code": "G", "nt_id": "///B/16", "linked_nts": [ "///B/15", "///B/17" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -42.659, "beta": 149.876, "gamma": 54.713, "delta": 83.894, "epsilon": -178.237, "zeta": 26.232, "epsilon_zeta": 155.531, "bb_type": "--", "chi": -171.256, "glyco_bond": "anti", "C5prime_xyz": [ -1.546, 8.626, 1.216 ], "P_xyz": [ 1.055, 8.762, 1.440 ], "form": ".", "ssZp": 4.175, "Dp": 4.256, "splay_angle": 23.443, "splay_distance": 4.140, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 168.274, "theta": -81.406, "eta_prime": -165.957, "theta_prime": -120.396, "eta_base": -108.326, "theta_base": -108.723, "v0": 0.842, "v1": -21.495, "v2": 32.768, "v3": -33.254, "v4": 20.494, "amplitude": 34.320, "phase_angle": 17.300, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.419, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 187.207, 142.727, 81.362 ], "x_axis": [ -0.676, 0.693, -0.250 ], "y_axis": [ 0.606, 0.716, 0.347 ], "z_axis": [ 0.420, 0.083, -0.904 ], "quaternion": [ 0.185, 0.358, 0.908, 0.118 ] } }, { "index": 2693, "index_chain": 15, "chain_name": "B", "nt_resnum": 17, "nt_name": "A", "nt_code": "A", "nt_id": "///B/17", "linked_nts": [ "///B/16", "///B/18" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": 177.922, "beta": 83.307, "gamma": 155.437, "delta": 82.665, "epsilon": -112.759, "zeta": -112.530, "epsilon_zeta": -0.229, "bb_type": "--", "chi": 176.099, "glyco_bond": "anti", "C5prime_xyz": [ -1.149, 8.075, 1.908 ], "P_xyz": [ -1.066, 10.187, 0.367 ], "form": "A", "ssZp": 4.815, "Dp": 4.833, "splay_angle": 22.302, "splay_distance": 3.289, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 137.700, "theta": 159.747, "eta_prime": 156.484, "theta_prime": 177.453, "eta_base": -164.409, "theta_base": -145.616, "v0": 9.097, "v1": -29.668, "v2": 37.954, "v3": -33.798, "v4": 15.606, "amplitude": 38.112, "phase_angle": 5.204, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.009, "origin": [ 186.287, 142.450, 77.335 ], "x_axis": [ -0.368, 0.921, 0.126 ], "y_axis": [ 0.872, 0.295, 0.391 ], "z_axis": [ 0.323, 0.254, -0.912 ], "quaternion": [ 0.061, 0.559, 0.802, 0.201 ] } }, { "index": 2694, "index_chain": 16, "chain_name": "B", "nt_resnum": 18, "nt_name": "A", "nt_code": "A", "nt_id": "///B/18", "linked_nts": [ "///B/17", "///B/19" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -31.092, "beta": 135.235, "gamma": 39.066, "delta": 78.873, "epsilon": -126.099, "zeta": -123.930, "epsilon_zeta": -2.169, "bb_type": "--", "chi": -174.029, "glyco_bond": "anti", "C5prime_xyz": [ -1.553, 8.462, 1.325 ], "P_xyz": [ 1.056, 8.368, 1.414 ], "form": "A", "ssZp": 4.699, "Dp": 4.784, "splay_angle": 21.855, "splay_distance": 3.434, "splay_ratio": 0.193, "d22": null, "d64": null, "eta": 166.237, "theta": -126.866, "eta_prime": 178.553, "theta_prime": -135.986, "eta_base": -140.365, "theta_base": -118.935, "v0": 4.108, "v1": -27.076, "v2": 38.603, "v3": -37.326, "v4": 20.868, "amplitude": 39.588, "phase_angle": 12.808, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.123, "filter_rmsd": 0.037, "frame": { "rmsd": 0.009, "origin": [ 185.911, 143.441, 74.222 ], "x_axis": [ 0.158, 0.899, 0.409 ], "y_axis": [ 0.947, -0.254, 0.194 ], "z_axis": [ 0.278, 0.357, -0.892 ], "quaternion": [ -0.054, 0.759, 0.608, 0.226 ] } }, { "index": 2695, "index_chain": 17, "chain_name": "B", "nt_resnum": 19, "nt_name": "G", "nt_code": "G", "nt_id": "///B/19", "linked_nts": [ "///B/18", "///B/20" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 144.370, "beta": -129.689, "gamma": 161.952, "delta": 75.804, "epsilon": 105.607, "zeta": 66.143, "epsilon_zeta": 39.464, "bb_type": "--", "chi": 171.784, "glyco_bond": "anti", "C5prime_xyz": [ -1.515, 8.119, 2.111 ], "P_xyz": [ 0.625, 9.148, 1.016 ], "form": ".", "ssZp": 3.426, "Dp": 3.677, "splay_angle": 25.884, "splay_distance": 4.330, "splay_ratio": 0.234, "d22": null, "d64": null, "eta": 168.526, "theta": -127.199, "eta_prime": -176.091, "theta_prime": -139.698, "eta_base": -138.554, "theta_base": -126.370, "v0": 6.800, "v1": -28.709, "v2": 38.701, "v3": -35.855, "v4": 18.389, "amplitude": 39.177, "phase_angle": 8.939, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 185.313, 145.778, 71.777 ], "x_axis": [ 0.485, 0.382, 0.787 ], "y_axis": [ 0.760, -0.629, -0.163 ], "z_axis": [ 0.433, 0.677, -0.595 ], "quaternion": [ -0.255, 0.823, 0.347, 0.371 ] } }, { "index": 2696, "index_chain": 18, "chain_name": "B", "nt_resnum": 20, "nt_name": "A", "nt_code": "A", "nt_id": "///B/20", "linked_nts": [ "///B/19", "///B/21" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate", "alpha": -168.724, "beta": -160.978, "gamma": 55.090, "delta": 81.228, "epsilon": 169.895, "zeta": -85.120, "epsilon_zeta": -104.985, "bb_type": "BI", "chi": -152.403, "glyco_bond": "anti", "C5prime_xyz": [ -1.956, 8.816, 0.028 ], "P_xyz": [ 0.337, 9.869, 0.714 ], "form": "A", "ssZp": 3.949, "Dp": 4.070, "splay_angle": 19.218, "splay_distance": 3.045, "splay_ratio": 0.167, "d22": null, "d64": null, "eta": 134.749, "theta": -157.659, "eta_prime": 166.196, "theta_prime": -158.391, "eta_base": -157.184, "theta_base": -133.351, "v0": -4.445, "v1": -17.705, "v2": 31.706, "v3": -35.239, "v4": 25.046, "amplitude": 35.196, "phase_angle": 25.730, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.010, "origin": [ 184.955, 149.737, 70.060 ], "x_axis": [ 0.767, -0.126, 0.629 ], "y_axis": [ 0.309, -0.786, -0.535 ], "z_axis": [ 0.561, 0.605, -0.564 ], "quaternion": [ -0.323, 0.883, 0.052, 0.337 ] } }, { "index": 2697, "index_chain": 19, "chain_name": "B", "nt_resnum": 21, "nt_name": "G", "nt_code": "G", "nt_id": "///B/21", "linked_nts": [ "///B/20", "///B/22" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -172.736, "beta": -138.943, "gamma": 134.848, "delta": 85.777, "epsilon": -88.844, "zeta": -171.069, "epsilon_zeta": 82.225, "bb_type": "BII", "chi": -161.278, "glyco_bond": "anti", "C5prime_xyz": [ -1.673, 8.794, 0.593 ], "P_xyz": [ 0.734, 9.165, -0.370 ], "form": ".", "ssZp": 3.755, "Dp": 4.378, "splay_angle": 18.804, "splay_distance": 3.540, "splay_ratio": 0.199, "d22": null, "d64": null, "eta": -178.651, "theta": 179.472, "eta_prime": -174.065, "theta_prime": -170.387, "eta_base": -145.385, "theta_base": -159.002, "v0": -2.127, "v1": -18.507, "v2": 30.770, "v3": -32.891, "v4": 22.113, "amplitude": 33.231, "phase_angle": 22.188, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 186.084, 152.391, 69.083 ], "x_axis": [ 0.840, -0.477, 0.260 ], "y_axis": [ -0.024, -0.510, -0.860 ], "z_axis": [ 0.543, 0.716, -0.439 ], "quaternion": [ -0.472, 0.835, -0.150, 0.240 ] } }, { "index": 2698, "index_chain": 20, "chain_name": "B", "nt_resnum": 22, "nt_name": "G", "nt_code": "G", "nt_id": "///B/22", "linked_nts": [ "///B/21", "///B/23" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -28.604, "beta": 104.889, "gamma": 35.631, "delta": 84.907, "epsilon": -102.438, "zeta": 170.443, "epsilon_zeta": 87.120, "bb_type": "BII", "chi": -117.162, "glyco_bond": "anti", "C5prime_xyz": [ -1.819, 8.350, -1.875 ], "P_xyz": [ 0.618, 7.504, -2.311 ], "form": ".", "ssZp": 1.459, "Dp": 4.548, "splay_angle": 77.282, "splay_distance": 12.431, "splay_ratio": 0.625, "d22": null, "d64": null, "eta": -175.688, "theta": 163.409, "eta_prime": -172.396, "theta_prime": 130.928, "eta_base": -165.701, "theta_base": 112.722, "v0": -0.213, "v1": -20.135, "v2": 31.588, "v3": -32.621, "v4": 20.762, "amplitude": 33.407, "phase_angle": 18.992, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 186.294, 154.876, 66.571 ], "x_axis": [ 0.885, -0.460, -0.073 ], "y_axis": [ -0.096, -0.026, -0.995 ], "z_axis": [ 0.456, 0.888, -0.067 ], "quaternion": [ 0.669, -0.703, 0.198, -0.136 ] } }, { "index": 2699, "index_chain": 21, "chain_name": "B", "nt_resnum": 23, "nt_name": "U", "nt_code": "U", "nt_id": "///B/23", "linked_nts": [ "///B/22", "///B/24" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": 46.775, "beta": -146.081, "gamma": 164.913, "delta": 81.707, "epsilon": -118.300, "zeta": -65.298, "epsilon_zeta": -53.001, "bb_type": "--", "chi": 167.685, "glyco_bond": "anti", "C5prime_xyz": [ -1.527, 8.003, 2.332 ], "P_xyz": [ 0.687, 9.296, 1.811 ], "form": ".", "ssZp": 4.692, "Dp": 4.748, "splay_angle": 31.684, "splay_distance": 4.784, "splay_ratio": 0.275, "d22": 3.666, "d64": 3.528, "eta": 102.180, "theta": -128.288, "eta_prime": 99.410, "theta_prime": -127.421, "eta_base": 116.054, "theta_base": -71.829, "v0": 4.863, "v1": -26.311, "v2": 36.661, "v3": -34.836, "v4": 18.863, "amplitude": 37.384, "phase_angle": 11.290, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.110, "frame": { "rmsd": 0.009, "origin": [ 176.288, 159.457, 60.790 ], "x_axis": [ 0.253, -0.640, 0.725 ], "y_axis": [ 0.723, -0.373, -0.581 ], "z_axis": [ 0.643, 0.672, 0.368 ], "quaternion": [ 0.559, -0.561, -0.037, -0.610 ] } }, { "index": 2700, "index_chain": 22, "chain_name": "B", "nt_resnum": 24, "nt_name": "C", "nt_code": "C", "nt_id": "///B/24", "linked_nts": [ "///B/23", "///B/25" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,internal-loop", "alpha": -66.927, "beta": 170.888, "gamma": 50.375, "delta": 81.567, "epsilon": -142.388, "zeta": -59.151, "epsilon_zeta": -83.237, "bb_type": "BI", "chi": -171.247, "glyco_bond": "anti", "C5prime_xyz": [ -1.206, 8.575, 1.206 ], "P_xyz": [ 1.362, 8.703, 1.742 ], "form": ".", "ssZp": 4.622, "Dp": 4.684, "splay_angle": 27.466, "splay_distance": 4.235, "splay_ratio": 0.238, "d22": null, "d64": null, "eta": 151.993, "theta": -126.042, "eta_prime": 179.055, "theta_prime": -122.678, "eta_base": -99.003, "theta_base": -74.255, "v0": 4.391, "v1": -26.212, "v2": 36.914, "v3": -35.321, "v4": 19.497, "amplitude": 37.743, "phase_angle": 12.032, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.510, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 179.793, 159.282, 64.041 ], "x_axis": [ 0.710, -0.664, -0.234 ], "y_axis": [ 0.066, 0.393, -0.917 ], "z_axis": [ 0.701, 0.636, 0.323 ], "quaternion": [ 0.779, -0.498, 0.300, -0.234 ] } }, { "index": 2701, "index_chain": 23, "chain_name": "B", "nt_resnum": 25, "nt_name": "A", "nt_code": "A", "nt_id": "///B/25", "linked_nts": [ "///B/24", "///B/26" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,phosphate", "alpha": -67.242, "beta": 166.452, "gamma": 59.900, "delta": 82.002, "epsilon": -125.641, "zeta": -79.656, "epsilon_zeta": -45.985, "bb_type": "--", "chi": -171.710, "glyco_bond": "anti", "C5prime_xyz": [ -1.513, 8.555, 1.222 ], "P_xyz": [ 1.077, 8.897, 1.504 ], "form": ".", "ssZp": 4.573, "Dp": 4.695, "splay_angle": 27.439, "splay_distance": 4.197, "splay_ratio": 0.237, "d22": null, "d64": null, "eta": 167.829, "theta": -129.231, "eta_prime": -168.363, "theta_prime": -125.985, "eta_base": -97.241, "theta_base": -67.015, "v0": 2.431, "v1": -23.978, "v2": 35.246, "v3": -34.797, "v4": 20.412, "amplitude": 36.467, "phase_angle": 14.869, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.837, "filter_rmsd": 0.038, "frame": { "rmsd": 0.003, "origin": [ 184.026, 159.186, 64.146 ], "x_axis": [ 0.478, -0.143, -0.866 ], "y_axis": [ -0.487, 0.778, -0.398 ], "z_axis": [ 0.731, 0.612, 0.302 ], "quaternion": [ 0.800, -0.316, 0.499, 0.108 ] } }, { "index": 2702, "index_chain": 24, "chain_name": "B", "nt_resnum": 26, "nt_name": "C", "nt_code": "C", "nt_id": "///B/26", "linked_nts": [ "///B/25", "///B/27" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,phosphate", "alpha": -50.206, "beta": 149.052, "gamma": 50.943, "delta": 80.880, "epsilon": -94.684, "zeta": -134.882, "epsilon_zeta": 40.197, "bb_type": "--", "chi": -163.048, "glyco_bond": "anti", "C5prime_xyz": [ -1.094, 8.672, 0.707 ], "P_xyz": [ 1.517, 8.637, 0.434 ], "form": ".", "ssZp": 4.139, "Dp": 4.765, "splay_angle": 16.254, "splay_distance": 2.670, "splay_ratio": 0.141, "d22": null, "d64": null, "eta": 171.662, "theta": -128.466, "eta_prime": -168.611, "theta_prime": -140.443, "eta_base": -93.239, "theta_base": -144.740, "v0": 4.966, "v1": -26.883, "v2": 37.413, "v3": -35.537, "v4": 19.298, "amplitude": 38.151, "phase_angle": 11.289, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.499, "filter_rmsd": 0.065, "frame": { "rmsd": 0.005, "origin": [ 186.940, 161.223, 61.917 ], "x_axis": [ -0.124, 0.584, -0.802 ], "y_axis": [ -0.540, 0.639, 0.549 ], "z_axis": [ 0.833, 0.501, 0.236 ], "quaternion": [ 0.661, 0.018, 0.618, 0.425 ] } }, { "index": 2703, "index_chain": 25, "chain_name": "B", "nt_resnum": 27, "nt_name": "A", "nt_code": "A", "nt_id": "///B/27", "linked_nts": [ "///B/26", "///B/28" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,phosphate", "alpha": 85.642, "beta": -102.412, "gamma": -173.978, "delta": 82.211, "epsilon": -112.741, "zeta": -141.344, "epsilon_zeta": 28.603, "bb_type": "--", "chi": -178.963, "glyco_bond": "anti", "C5prime_xyz": [ -1.333, 8.308, 1.626 ], "P_xyz": [ -0.074, 9.474, -0.359 ], "form": "A", "ssZp": 4.727, "Dp": 4.794, "splay_angle": 22.601, "splay_distance": 3.510, "splay_ratio": 0.197, "d22": null, "d64": null, "eta": 149.455, "theta": -163.408, "eta_prime": 163.791, "theta_prime": -169.329, "eta_base": 179.043, "theta_base": -150.391, "v0": 6.124, "v1": -27.660, "v2": 37.530, "v3": -34.999, "v4": 18.230, "amplitude": 38.058, "phase_angle": 9.556, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 189.565, 161.561, 62.266 ], "x_axis": [ -0.500, 0.522, -0.691 ], "y_axis": [ -0.323, 0.627, 0.708 ], "z_axis": [ 0.803, 0.578, -0.145 ], "quaternion": [ 0.496, 0.066, 0.754, 0.427 ] } }, { "index": 2704, "index_chain": 26, "chain_name": "B", "nt_resnum": 28, "nt_name": "C", "nt_code": "C", "nt_id": "///B/28", "linked_nts": [ "///B/27", "///B/29" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,phosphate", "alpha": 103.322, "beta": -93.215, "gamma": -177.953, "delta": 84.992, "epsilon": -107.730, "zeta": -55.493, "epsilon_zeta": -52.237, "bb_type": "--", "chi": 162.502, "glyco_bond": "anti", "C5prime_xyz": [ -1.533, 7.866, 2.546 ], "P_xyz": [ 0.349, 9.024, 1.139 ], "form": ".", "ssZp": 4.571, "Dp": 4.694, "splay_angle": 60.623, "splay_distance": 9.243, "splay_ratio": 0.506, "d22": 4.880, "d64": 5.694, "eta": 173.198, "theta": -79.125, "eta_prime": -173.834, "theta_prime": -84.261, "eta_base": -138.599, "theta_base": -57.602, "v0": 5.235, "v1": -25.694, "v2": 35.212, "v3": -33.129, "v4": 17.590, "amplitude": 35.795, "phase_angle": 10.349, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.071, "frame": { "rmsd": 0.011, "origin": [ 192.454, 162.395, 60.456 ], "x_axis": [ -0.609, 0.716, -0.342 ], "y_axis": [ -0.047, 0.398, 0.916 ], "z_axis": [ 0.792, 0.574, -0.209 ], "quaternion": [ 0.381, 0.225, 0.744, 0.501 ] } }, { "index": 2705, "index_chain": 27, "chain_name": "B", "nt_resnum": 29, "nt_name": "C", "nt_code": "C", "nt_id": "///B/29", "linked_nts": [ "///B/28", "///B/30" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor", "alpha": -177.208, "beta": -152.003, "gamma": 158.158, "delta": 141.889, "epsilon": -153.471, "zeta": -78.620, "epsilon_zeta": -74.850, "bb_type": "BI", "chi": -159.505, "glyco_bond": "anti", "C5prime_xyz": [ -2.091, 8.693, 0.822 ], "P_xyz": [ 0.367, 9.537, 0.553 ], "form": ".", "ssZp": 1.747, "Dp": 2.141, "splay_angle": 22.642, "splay_distance": 4.076, "splay_ratio": 0.207, "d22": 4.993, "d64": 4.780, "eta": 153.547, "theta": -82.873, "eta_prime": -142.663, "theta_prime": -134.292, "eta_base": -81.700, "theta_base": -104.578, "v0": -23.713, "v1": 35.068, "v2": -32.384, "v3": 19.561, "v4": 2.402, "amplitude": 35.094, "phase_angle": 157.334, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.010, "filter_rmsd": 0.056, "frame": { "rmsd": 0.010, "origin": [ 193.575, 171.409, 62.165 ], "x_axis": [ -0.472, 0.159, 0.867 ], "y_axis": [ 0.480, -0.779, 0.404 ], "z_axis": [ 0.740, 0.606, 0.291 ], "quaternion": [ -0.100, 0.504, 0.317, 0.797 ] } }, { "index": 2706, "index_chain": 28, "chain_name": "B", "nt_resnum": 30, "nt_name": "C", "nt_code": "C", "nt_id": "///B/30", "linked_nts": [ "///B/29", "///B/31" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": 132.689, "beta": 170.071, "gamma": 158.144, "delta": 79.506, "epsilon": -165.787, "zeta": -76.419, "epsilon_zeta": -89.368, "bb_type": "BI", "chi": -153.162, "glyco_bond": "anti", "C5prime_xyz": [ -1.483, 8.848, 0.071 ], "P_xyz": [ -0.468, 10.339, -1.836 ], "form": ".", "ssZp": 4.229, "Dp": 4.490, "splay_angle": 18.722, "splay_distance": 3.418, "splay_ratio": 0.177, "d22": null, "d64": null, "eta": 104.618, "theta": -157.393, "eta_prime": 139.208, "theta_prime": -164.495, "eta_base": -163.497, "theta_base": -142.876, "v0": 0.056, "v1": -22.744, "v2": 35.531, "v3": -36.434, "v4": 22.945, "amplitude": 37.467, "phase_angle": 18.495, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.006, "origin": [ 195.573, 174.831, 63.119 ], "x_axis": [ -0.051, -0.353, 0.934 ], "y_axis": [ 0.652, -0.720, -0.236 ], "z_axis": [ 0.756, 0.597, 0.267 ], "quaternion": [ -0.352, 0.592, 0.126, 0.714 ] } }, { "index": 2707, "index_chain": 29, "chain_name": "B", "nt_resnum": 31, "nt_name": "G", "nt_code": "G", "nt_id": "///B/31", "linked_nts": [ "///B/30", "///B/32" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor", "alpha": 140.153, "beta": -152.278, "gamma": -176.430, "delta": 79.276, "epsilon": -124.604, "zeta": -69.012, "epsilon_zeta": -55.592, "bb_type": "--", "chi": -178.326, "glyco_bond": "anti", "C5prime_xyz": [ -1.497, 8.444, 1.571 ], "P_xyz": [ -0.131, 10.345, 0.391 ], "form": ".", "ssZp": 4.783, "Dp": 4.798, "splay_angle": 20.605, "splay_distance": 4.761, "splay_ratio": 0.236, "d22": null, "d64": null, "eta": 162.201, "theta": -124.852, "eta_prime": 176.665, "theta_prime": -132.108, "eta_base": -143.448, "theta_base": -112.895, "v0": 4.007, "v1": -26.766, "v2": 38.210, "v3": -36.909, "v4": 20.722, "amplitude": 39.194, "phase_angle": 12.865, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.767, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 196.168, 177.234, 65.477 ], "x_axis": [ 0.160, -0.658, 0.736 ], "y_axis": [ 0.710, -0.441, -0.549 ], "z_axis": [ 0.685, 0.611, 0.397 ], "quaternion": [ 0.528, -0.549, -0.024, -0.648 ] } }, { "index": 2708, "index_chain": 30, "chain_name": "B", "nt_resnum": 32, "nt_name": "U", "nt_code": "U", "nt_id": "///B/32", "linked_nts": [ "///B/31", "///B/33" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-pair-contact,internal-loop,cap-donor", "alpha": 91.753, "beta": -145.034, "gamma": -92.257, "delta": 83.893, "epsilon": -85.583, "zeta": 116.202, "epsilon_zeta": 158.215, "bb_type": "--", "chi": -150.102, "glyco_bond": "anti", "C5prime_xyz": [ -2.029, 8.901, -0.161 ], "P_xyz": [ -2.625, 11.327, -0.980 ], "form": ".", "ssZp": 3.077, "Dp": 4.084, "splay_angle": 80.325, "splay_distance": 12.211, "splay_ratio": 0.649, "d22": 8.206, "d64": 9.217, "eta": -158.530, "theta": 53.168, "eta_prime": -145.722, "theta_prime": 76.924, "eta_base": -112.241, "theta_base": 96.882, "v0": -8.154, "v1": -13.896, "v2": 29.086, "v3": -34.608, "v4": 26.999, "amplitude": 34.286, "phase_angle": 31.967, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.103, "frame": { "rmsd": 0.005, "origin": [ 195.792, 177.303, 70.222 ], "x_axis": [ 0.533, -0.509, 0.676 ], "y_axis": [ 0.823, 0.128, -0.553 ], "z_axis": [ 0.195, 0.851, 0.487 ], "quaternion": [ 0.733, -0.479, -0.164, -0.454 ] } }, { "index": 2709, "index_chain": 31, "chain_name": "B", "nt_resnum": 33, "nt_name": "U", "nt_code": "U", "nt_id": "///B/33", "linked_nts": [ "///B/32", "///B/34" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor", "alpha": 164.576, "beta": -133.978, "gamma": 77.575, "delta": 84.533, "epsilon": -110.853, "zeta": -62.961, "epsilon_zeta": -47.892, "bb_type": "--", "chi": -170.908, "glyco_bond": "anti", "C5prime_xyz": [ -1.332, 8.553, 1.192 ], "P_xyz": [ 1.107, 8.208, 2.133 ], "form": ".", "ssZp": 4.491, "Dp": 4.691, "splay_angle": 31.992, "splay_distance": 6.045, "splay_ratio": 0.294, "d22": 4.871, "d64": 5.982, "eta": 160.223, "theta": -71.304, "eta_prime": 149.323, "theta_prime": -76.113, "eta_base": 143.501, "theta_base": -46.835, "v0": 2.879, "v1": -23.297, "v2": 33.720, "v3": -32.983, "v4": 18.977, "amplitude": 34.745, "phase_angle": 13.952, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 194.634, 184.199, 60.212 ], "x_axis": [ -0.335, -0.668, 0.665 ], "y_axis": [ 0.942, -0.252, 0.221 ], "z_axis": [ 0.020, 0.701, 0.713 ], "quaternion": [ 0.531, -0.226, -0.304, -0.758 ] } }, { "index": 2710, "index_chain": 32, "chain_name": "B", "nt_resnum": 34, "nt_name": "C", "nt_code": "C", "nt_id": "///B/34", "linked_nts": [ "///B/33", "///B/35" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,cap-donor,cap-acceptor", "alpha": 90.225, "beta": -134.706, "gamma": -110.455, "delta": 78.283, "epsilon": -111.831, "zeta": -25.198, "epsilon_zeta": -86.633, "bb_type": "--", "chi": -147.516, "glyco_bond": "anti", "C5prime_xyz": [ -1.557, 8.889, -0.249 ], "P_xyz": [ -2.041, 11.075, -1.634 ], "form": ".", "ssZp": 3.589, "Dp": 4.695, "splay_angle": 33.663, "splay_distance": 5.886, "splay_ratio": 0.292, "d22": 3.772, "d64": 4.322, "eta": 179.716, "theta": -119.245, "eta_prime": -157.047, "theta_prime": -142.145, "eta_base": -98.905, "theta_base": -138.405, "v0": -0.993, "v1": -22.210, "v2": 35.652, "v3": -37.219, "v4": 24.097, "amplitude": 37.958, "phase_angle": 20.075, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.005, "origin": [ 193.314, 181.724, 65.568 ], "x_axis": [ 0.286, -0.437, 0.853 ], "y_axis": [ 0.835, 0.550, 0.002 ], "z_axis": [ -0.470, 0.712, 0.522 ], "quaternion": [ 0.768, -0.231, -0.431, -0.414 ] } }, { "index": 2711, "index_chain": 33, "chain_name": "B", "nt_resnum": 35, "nt_name": "C", "nt_code": "C", "nt_id": "///B/35", "linked_nts": [ "///B/34", "///B/36" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop", "alpha": 175.759, "beta": 110.065, "gamma": 148.937, "delta": 80.542, "epsilon": 179.335, "zeta": 15.454, "epsilon_zeta": 163.881, "bb_type": "--", "chi": -154.631, "glyco_bond": "anti", "C5prime_xyz": [ -1.398, 8.819, 0.188 ], "P_xyz": [ -1.403, 10.146, -2.079 ], "form": ".", "ssZp": 4.222, "Dp": 4.350, "splay_angle": 60.221, "splay_distance": 8.988, "splay_ratio": 0.502, "d22": 3.363, "d64": 4.716, "eta": 114.301, "theta": -134.521, "eta_prime": 141.464, "theta_prime": -117.415, "eta_base": 160.318, "theta_base": -63.137, "v0": 1.017, "v1": -23.179, "v2": 35.234, "v3": -35.640, "v4": 21.859, "amplitude": 36.858, "phase_angle": 17.073, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 192.147, 183.561, 71.036 ], "x_axis": [ 0.471, -0.854, -0.218 ], "y_axis": [ 0.771, 0.520, -0.369 ], "z_axis": [ 0.429, 0.006, 0.903 ], "quaternion": [ 0.851, -0.110, 0.190, -0.478 ] } }, { "index": 2712, "index_chain": 34, "chain_name": "B", "nt_resnum": 36, "nt_name": "C", "nt_code": "C", "nt_id": "///B/36", "linked_nts": [ "///B/35", "///B/37" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,internal-loop,phosphate", "alpha": -129.072, "beta": -171.236, "gamma": 59.288, "delta": 82.544, "epsilon": -135.913, "zeta": -73.388, "epsilon_zeta": -62.525, "bb_type": "BI", "chi": -160.286, "glyco_bond": "anti", "C5prime_xyz": [ -0.993, 8.676, 0.569 ], "P_xyz": [ 1.600, 8.790, 0.924 ], "form": ".", "ssZp": 4.412, "Dp": 4.721, "splay_angle": 58.699, "splay_distance": 9.197, "splay_ratio": 0.491, "d22": null, "d64": null, "eta": 143.087, "theta": -105.732, "eta_prime": -172.435, "theta_prime": -115.921, "eta_base": -93.145, "theta_base": -128.086, "v0": 4.609, "v1": -26.147, "v2": 36.590, "v3": -34.881, "v4": 19.110, "amplitude": 37.361, "phase_angle": 11.658, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.068, "frame": { "rmsd": 0.007, "origin": [ 200.818, 182.567, 68.889 ], "x_axis": [ 0.414, 0.689, -0.595 ], "y_axis": [ -0.481, 0.721, 0.499 ], "z_axis": [ 0.773, 0.080, 0.629 ], "quaternion": [ 0.831, 0.126, 0.412, 0.352 ] } }, { "index": 2713, "index_chain": 35, "chain_name": "B", "nt_resnum": 37, "nt_name": "A", "nt_code": "A", "nt_id": "///B/37", "linked_nts": [ "///B/36", "///B/38" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": 97.088, "beta": -129.521, "gamma": -76.259, "delta": 78.696, "epsilon": -109.981, "zeta": -78.297, "epsilon_zeta": -31.684, "bb_type": "--", "chi": 88.243, "glyco_bond": "syn", "C5prime_xyz": [ -4.421, 5.006, 2.946 ], "P_xyz": [ -6.329, 5.751, 4.580 ], "form": ".", "ssZp": 0.558, "Dp": 4.654, "splay_angle": 97.548, "splay_distance": 11.946, "splay_ratio": 0.753, "d22": null, "d64": null, "eta": -132.411, "theta": -160.070, "eta_prime": -123.095, "theta_prime": 177.753, "eta_base": -100.288, "theta_base": 133.113, "v0": -0.146, "v1": -22.701, "v2": 35.578, "v3": -36.745, "v4": 23.285, "amplitude": 37.604, "phase_angle": 18.893, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33m", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.044, "frame": { "rmsd": 0.013, "origin": [ 208.181, 182.808, 74.395 ], "x_axis": [ 0.584, 0.152, -0.797 ], "y_axis": [ -0.810, 0.061, -0.583 ], "z_axis": [ -0.040, 0.986, 0.159 ], "quaternion": [ 0.672, -0.584, 0.282, 0.358 ] } }, { "index": 2714, "index_chain": 36, "chain_name": "B", "nt_resnum": 38, "nt_name": "U", "nt_code": "U", "nt_id": "///B/38", "linked_nts": [ "///B/37", "///B/39" ], "nt_type": "RNA", "dbn": ".", "summary": "~C2'-endo,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,splayed-apart", "alpha": -168.759, "beta": 165.655, "gamma": 67.647, "delta": 151.437, "epsilon": -67.926, "zeta": -150.798, "epsilon_zeta": 82.872, "bb_type": "--", "chi": -75.084, "glyco_bond": "--", "C5prime_xyz": [ -3.149, 7.126, -2.805 ], "P_xyz": [ -0.841, 7.363, -4.043 ], "form": ".", "ssZp": 0.268, "Dp": 0.210, "splay_angle": 101.879, "splay_distance": 12.294, "splay_ratio": 0.795, "d22": null, "d64": null, "eta": 81.494, "theta": -129.081, "eta_prime": 124.271, "theta_prime": -132.981, "eta_base": 58.087, "theta_base": -58.415, "v0": -22.699, "v1": 38.225, "v2": -38.228, "v3": 26.121, "v4": -2.322, "amplitude": 39.658, "phase_angle": 164.566, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1z", "suiteness": 0.090, "filter_rmsd": 0.105, "frame": { "rmsd": 0.007, "origin": [ 199.581, 174.652, 75.880 ], "x_axis": [ -0.438, 0.250, -0.863 ], "y_axis": [ 0.606, 0.791, -0.079 ], "z_axis": [ 0.664, -0.558, -0.498 ], "quaternion": [ 0.462, 0.259, 0.826, -0.193 ] } }, { "index": 2715, "index_chain": 37, "chain_name": "B", "nt_resnum": 39, "nt_name": "A", "nt_code": "A", "nt_id": "///B/39", "linked_nts": [ "///B/38", "///B/40" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,syn,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart", "alpha": -72.034, "beta": 164.573, "gamma": 59.383, "delta": 145.719, "epsilon": -7.273, "zeta": 67.020, "epsilon_zeta": 285.707, "bb_type": "--", "chi": 65.409, "glyco_bond": "syn", "C5prime_xyz": [ -5.292, 4.155, 1.542 ], "P_xyz": [ -5.263, 1.523, 1.439 ], "form": ".", "ssZp": 0.514, "Dp": 1.003, "splay_angle": 96.945, "splay_distance": 15.708, "splay_ratio": 0.751, "d22": null, "d64": null, "eta": -127.759, "theta": 149.824, "eta_prime": -101.110, "theta_prime": 96.850, "eta_base": -103.776, "theta_base": 104.131, "v0": -22.595, "v1": 36.864, "v2": -36.247, "v3": 24.199, "v4": -1.247, "amplitude": 37.894, "phase_angle": 163.044, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.039, "frame": { "rmsd": 0.006, "origin": [ 208.889, 182.660, 76.482 ], "x_axis": [ 0.314, 0.320, -0.894 ], "y_axis": [ 0.597, -0.799, -0.076 ], "z_axis": [ -0.738, -0.510, -0.442 ], "quaternion": [ 0.135, 0.799, 0.287, -0.511 ] } }, { "index": 2716, "index_chain": 38, "chain_name": "B", "nt_resnum": 40, "nt_name": "C", "nt_code": "C", "nt_id": "///B/40", "linked_nts": [ "///B/39", "///B/41" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,hairpin-loop,splayed-apart", "alpha": -178.259, "beta": 139.184, "gamma": -81.018, "delta": 150.916, "epsilon": -135.727, "zeta": -151.759, "epsilon_zeta": 16.032, "bb_type": "--", "chi": -126.973, "glyco_bond": "anti", "C5prime_xyz": [ -1.957, 8.694, -0.783 ], "P_xyz": [ -1.995, 11.232, -0.081 ], "form": ".", "ssZp": 1.477, "Dp": 1.574, "splay_angle": 58.972, "splay_distance": 9.543, "splay_ratio": 0.492, "d22": 6.037, "d64": 6.638, "eta": -19.438, "theta": 132.047, "eta_prime": -46.123, "theta_prime": 96.044, "eta_base": -32.255, "theta_base": 73.462, "v0": -22.523, "v1": 38.605, "v2": -38.903, "v3": 26.887, "v4": -2.980, "amplitude": 40.207, "phase_angle": 165.367, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.062, "frame": { "rmsd": 0.003, "origin": [ 208.519, 167.928, 71.043 ], "x_axis": [ 0.505, -0.842, 0.188 ], "y_axis": [ 0.388, 0.416, 0.822 ], "z_axis": [ -0.771, -0.342, 0.537 ], "quaternion": [ 0.784, 0.371, -0.306, -0.392 ] } }, { "index": 2717, "index_chain": 39, "chain_name": "B", "nt_resnum": 41, "nt_name": "C", "nt_code": "C", "nt_id": "///B/41", "linked_nts": [ "///B/40", "///B/42" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart", "alpha": -37.959, "beta": -57.726, "gamma": -159.450, "delta": 82.728, "epsilon": -132.477, "zeta": 21.799, "epsilon_zeta": 205.724, "bb_type": "--", "chi": -158.665, "glyco_bond": "anti", "C5prime_xyz": [ -1.064, 8.685, 0.461 ], "P_xyz": [ -1.549, 9.319, -2.052 ], "form": ".", "ssZp": 4.344, "Dp": 4.737, "splay_angle": 151.325, "splay_distance": 14.653, "splay_ratio": 0.970, "d22": null, "d64": null, "eta": 143.946, "theta": -51.284, "eta_prime": 115.699, "theta_prime": -89.281, "eta_base": 99.339, "theta_base": 147.718, "v0": 5.095, "v1": -26.166, "v2": 36.068, "v3": -34.148, "v4": 18.369, "amplitude": 36.723, "phase_angle": 10.840, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.064, "frame": { "rmsd": 0.003, "origin": [ 214.214, 175.534, 70.159 ], "x_axis": [ -0.125, -0.928, -0.350 ], "y_axis": [ -0.878, -0.061, 0.475 ], "z_axis": [ -0.463, 0.366, -0.807 ], "quaternion": [ -0.041, -0.660, 0.684, 0.308 ] } }, { "index": 2718, "index_chain": 40, "chain_name": "B", "nt_resnum": 42, "nt_name": "G", "nt_code": "G", "nt_id": "///B/42", "linked_nts": [ "///B/41", "///B/43" ], "nt_type": "RNA", "dbn": ")", "summary": "turn,~C2'-endo,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,internal-loop,splayed-apart", "alpha": 86.032, "beta": 100.305, "gamma": 61.330, "delta": 147.249, "epsilon": -110.882, "zeta": 90.462, "epsilon_zeta": 158.656, "bb_type": "--", "chi": -38.867, "glyco_bond": "--", "C5prime_xyz": [ -4.075, 5.620, -3.011 ], "P_xyz": [ -1.986, 4.195, -3.735 ], "form": ".", "ssZp": -0.047, "Dp": 1.174, "splay_angle": 91.321, "splay_distance": 14.097, "splay_ratio": 0.716, "d22": null, "d64": null, "eta": -89.709, "theta": 144.970, "eta_prime": 14.807, "theta_prime": 65.815, "eta_base": 112.009, "theta_base": 62.615, "v0": -22.035, "v1": 36.159, "v2": -35.642, "v3": 23.882, "v4": -1.369, "amplitude": 37.215, "phase_angle": 163.284, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.011, "frame": { "rmsd": 0.011, "origin": [ 201.600, 182.989, 70.060 ], "x_axis": [ 0.398, 0.737, -0.547 ], "y_axis": [ 0.482, -0.675, -0.558 ], "z_axis": [ -0.780, -0.042, -0.624 ], "quaternion": [ -0.157, 0.821, 0.371, -0.404 ] } }, { "index": 2719, "index_chain": 41, "chain_name": "B", "nt_resnum": 43, "nt_name": "A", "nt_code": "A", "nt_id": "///B/43", "linked_nts": [ "///B/42", "///B/44" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,non-pair-contact,internal-loop,splayed-apart", "alpha": 85.351, "beta": 122.736, "gamma": 133.408, "delta": 82.750, "epsilon": -166.901, "zeta": 12.592, "epsilon_zeta": 180.507, "bb_type": "--", "chi": 107.107, "glyco_bond": "--", "C5prime_xyz": [ -3.982, 5.731, 3.245 ], "P_xyz": [ -2.759, 7.482, 4.784 ], "form": ".", "ssZp": 0.525, "Dp": 4.307, "splay_angle": 25.580, "splay_distance": 4.025, "splay_ratio": 0.246, "d22": null, "d64": null, "eta": 55.579, "theta": -72.190, "eta_prime": 59.199, "theta_prime": -73.345, "eta_base": 97.664, "theta_base": -13.806, "v0": -5.296, "v1": -18.984, "v2": 34.420, "v3": -38.441, "v4": 27.579, "amplitude": 38.391, "phase_angle": 26.289, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.002, "origin": [ 203.385, 170.829, 76.965 ], "x_axis": [ 0.930, 0.039, 0.366 ], "y_axis": [ 0.361, -0.295, -0.885 ], "z_axis": [ 0.074, 0.955, -0.289 ], "quaternion": [ 0.580, -0.793, -0.126, -0.139 ] } }, { "index": 2720, "index_chain": 42, "chain_name": "B", "nt_resnum": 44, "nt_name": "A", "nt_code": "A", "nt_id": "///B/44", "linked_nts": [ "///B/43", "///B/45" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,internal-loop,phosphate", "alpha": 174.159, "beta": -121.816, "gamma": 61.728, "delta": 149.827, "epsilon": -3.635, "zeta": 178.637, "epsilon_zeta": 177.728, "bb_type": "--", "chi": -73.990, "glyco_bond": "anti", "C5prime_xyz": [ -3.002, 7.095, -2.877 ], "P_xyz": [ -0.818, 8.572, -2.888 ], "form": ".", "ssZp": 0.141, "Dp": 1.019, "splay_angle": 71.678, "splay_distance": 10.247, "splay_ratio": 0.586, "d22": null, "d64": null, "eta": 111.034, "theta": -21.120, "eta_prime": -160.060, "theta_prime": -90.981, "eta_base": -73.935, "theta_base": -92.120, "v0": -21.573, "v1": 37.709, "v2": -38.589, "v3": 27.188, "v4": -3.710, "amplitude": 39.676, "phase_angle": 166.559, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.001, "origin": [ 206.137, 173.275, 75.337 ], "x_axis": [ 0.583, -0.274, -0.765 ], "y_axis": [ -0.805, -0.067, -0.589 ], "z_axis": [ 0.111, 0.959, -0.260 ], "quaternion": [ 0.560, -0.691, 0.391, 0.237 ] } }, { "index": 2721, "index_chain": 43, "chain_name": "B", "nt_resnum": 45, "nt_name": "C", "nt_code": "C", "nt_id": "///B/45", "linked_nts": [ "///B/44", "///B/46" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,cap-donor,phosphate,splayed-apart", "alpha": -24.959, "beta": 107.254, "gamma": -65.699, "delta": 143.322, "epsilon": -143.678, "zeta": -135.696, "epsilon_zeta": -7.981, "bb_type": "--", "chi": 49.446, "glyco_bond": "syn", "C5prime_xyz": [ -5.615, 4.196, 0.805 ], "P_xyz": [ -7.726, 4.164, -0.773 ], "form": ".", "ssZp": -1.682, "Dp": 1.825, "splay_angle": 85.151, "splay_distance": 11.011, "splay_ratio": 0.709, "d22": null, "d64": null, "eta": 69.104, "theta": -172.374, "eta_prime": 126.067, "theta_prime": 138.614, "eta_base": 158.114, "theta_base": 59.142, "v0": -29.266, "v1": 41.558, "v2": -37.452, "v3": 21.479, "v4": 4.766, "amplitude": 41.374, "phase_angle": 154.852, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 200.801, 180.264, 70.075 ], "x_axis": [ -0.118, 0.621, -0.775 ], "y_axis": [ -0.993, -0.066, 0.098 ], "z_axis": [ 0.009, 0.781, 0.624 ], "quaternion": [ 0.600, -0.285, 0.327, 0.672 ] } }, { "index": 2722, "index_chain": 44, "chain_name": "B", "nt_resnum": 46, "nt_name": "A", "nt_code": "A", "nt_id": "///B/46", "linked_nts": [ "///B/45", "///B/47" ], "nt_type": "RNA", "dbn": ".", "summary": "syn,~C2'-endo,non-stack,non-pair-contact,internal-loop,cap-acceptor,splayed-apart", "alpha": 34.085, "beta": -114.603, "gamma": 164.586, "delta": 146.553, "epsilon": -176.349, "zeta": 24.421, "epsilon_zeta": 159.230, "bb_type": "--", "chi": -21.562, "glyco_bond": "syn", "C5prime_xyz": [ -4.627, 4.908, -2.616 ], "P_xyz": [ -3.879, 2.445, -3.121 ], "form": ".", "ssZp": 0.118, "Dp": 2.137, "splay_angle": 115.621, "splay_distance": 17.170, "splay_ratio": 0.846, "d22": null, "d64": null, "eta": 29.454, "theta": 35.531, "eta_prime": 89.156, "theta_prime": -147.428, "eta_base": 67.328, "theta_base": -150.667, "v0": -22.417, "v1": 36.545, "v2": -35.893, "v3": 23.792, "v4": -1.105, "amplitude": 37.561, "phase_angle": 162.861, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.005, "origin": [ 194.248, 177.858, 78.591 ], "x_axis": [ 0.778, 0.537, 0.326 ], "y_axis": [ -0.037, 0.558, -0.829 ], "z_axis": [ -0.627, 0.633, 0.454 ], "quaternion": [ 0.835, -0.437, -0.285, 0.172 ] } }, { "index": 2723, "index_chain": 45, "chain_name": "B", "nt_resnum": 47, "nt_name": "C", "nt_code": "C", "nt_id": "///B/47", "linked_nts": [ "///B/46", "///B/48" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart", "alpha": -177.284, "beta": -8.270, "gamma": -134.671, "delta": 77.855, "epsilon": -152.877, "zeta": 43.931, "epsilon_zeta": 163.192, "bb_type": "--", "chi": -138.233, "glyco_bond": "anti", "C5prime_xyz": [ -1.990, 8.892, -0.841 ], "P_xyz": [ -4.399, 9.140, -1.881 ], "form": ".", "ssZp": 3.564, "Dp": 4.430, "splay_angle": 122.606, "splay_distance": 16.705, "splay_ratio": 0.877, "d22": null, "d64": null, "eta": 91.264, "theta": -123.281, "eta_prime": 161.035, "theta_prime": -86.180, "eta_base": 163.742, "theta_base": -76.487, "v0": -7.254, "v1": -16.445, "v2": 32.371, "v3": -37.597, "v4": 28.334, "amplitude": 37.252, "phase_angle": 29.662, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.059, "frame": { "rmsd": 0.007, "origin": [ 193.214, 190.629, 67.161 ], "x_axis": [ 0.892, 0.113, -0.438 ], "y_axis": [ 0.071, -0.991, -0.109 ], "z_axis": [ -0.446, 0.066, -0.892 ], "quaternion": [ -0.045, 0.972, 0.047, -0.228 ] } }, { "index": 2724, "index_chain": 46, "chain_name": "B", "nt_resnum": 48, "nt_name": "G", "nt_code": "G", "nt_id": "///B/48", "linked_nts": [ "///B/47", "///B/49" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart", "alpha": -139.065, "beta": -102.120, "gamma": 64.965, "delta": 142.978, "epsilon": 16.328, "zeta": 144.862, "epsilon_zeta": -128.534, "bb_type": "--", "chi": -99.545, "glyco_bond": "anti", "C5prime_xyz": [ -2.807, 7.942, -2.119 ], "P_xyz": [ -0.855, 9.254, -0.951 ], "form": ".", "ssZp": 0.276, "Dp": 1.162, "splay_angle": 17.238, "splay_distance": 3.266, "splay_ratio": 0.176, "d22": null, "d64": null, "eta": 172.073, "theta": -77.862, "eta_prime": -112.073, "theta_prime": -155.800, "eta_base": -99.227, "theta_base": -111.677, "v0": -23.663, "v1": 35.960, "v2": -33.801, "v3": 21.079, "v4": 1.400, "amplitude": 36.207, "phase_angle": 158.994, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.018, "frame": { "rmsd": 0.018, "origin": [ 195.660, 174.671, 62.870 ], "x_axis": [ -0.093, -0.350, 0.932 ], "y_axis": [ -0.694, 0.694, 0.191 ], "z_axis": [ -0.714, -0.629, -0.307 ], "quaternion": [ 0.569, 0.361, -0.723, 0.151 ] } }, { "index": 2725, "index_chain": 47, "chain_name": "B", "nt_resnum": 49, "nt_name": "G", "nt_code": "G", "nt_id": "///B/49", "linked_nts": [ "///B/48", "///B/50" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor", "alpha": -40.365, "beta": -132.284, "gamma": -156.693, "delta": 82.266, "epsilon": 161.030, "zeta": -84.870, "epsilon_zeta": -114.100, "bb_type": "BI", "chi": -142.619, "glyco_bond": "anti", "C5prime_xyz": [ -1.138, 8.764, -0.499 ], "P_xyz": [ -0.595, 9.719, -2.879 ], "form": ".", "ssZp": 3.767, "Dp": 4.100, "splay_angle": 19.186, "splay_distance": 3.063, "splay_ratio": 0.167, "d22": null, "d64": null, "eta": 110.463, "theta": 160.065, "eta_prime": 125.591, "theta_prime": 173.883, "eta_base": -169.692, "theta_base": -172.475, "v0": 2.793, "v1": -23.870, "v2": 34.766, "v3": -34.028, "v4": 19.748, "amplitude": 35.865, "phase_angle": 14.219, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 194.460, 171.697, 62.256 ], "x_axis": [ -0.452, 0.178, 0.874 ], "y_axis": [ -0.511, 0.751, -0.417 ], "z_axis": [ -0.731, -0.635, -0.248 ], "quaternion": [ 0.513, 0.106, -0.783, 0.336 ] } }, { "index": 2726, "index_chain": 48, "chain_name": "B", "nt_resnum": 50, "nt_name": "A", "nt_code": "A", "nt_id": "///B/50", "linked_nts": [ "///B/49", "///B/51" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-canonical,non-pair-contact,internal-loop", "alpha": 167.873, "beta": -133.016, "gamma": 167.661, "delta": 149.616, "epsilon": -81.925, "zeta": -137.177, "epsilon_zeta": 55.252, "bb_type": "--", "chi": -145.959, "glyco_bond": "anti", "C5prime_xyz": [ -2.037, 8.654, 0.242 ], "P_xyz": [ 0.416, 9.085, -0.576 ], "form": ".", "ssZp": 0.371, "Dp": 0.414, "splay_angle": 34.195, "splay_distance": 5.736, "splay_ratio": 0.294, "d22": null, "d64": null, "eta": -116.988, "theta": -160.171, "eta_prime": -122.305, "theta_prime": 170.077, "eta_base": -116.835, "theta_base": 154.283, "v0": -21.403, "v1": 36.547, "v2": -36.862, "v3": 25.486, "v4": -2.776, "amplitude": 38.104, "phase_angle": 165.335, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "1t", "suiteness": 0.151, "filter_rmsd": 0.036, "frame": { "rmsd": 0.010, "origin": [ 193.111, 169.103, 61.341 ], "x_axis": [ -0.559, 0.440, 0.702 ], "y_axis": [ -0.457, 0.543, -0.704 ], "z_axis": [ -0.691, -0.715, -0.102 ], "quaternion": [ -0.469, -0.006, 0.742, -0.478 ] } }, { "index": 2727, "index_chain": 49, "chain_name": "B", "nt_resnum": 51, "nt_name": "A", "nt_code": "A", "nt_id": "///B/51", "linked_nts": [ "///B/50", "///B/52" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor", "alpha": 23.525, "beta": -139.587, "gamma": 166.405, "delta": 79.628, "epsilon": -143.404, "zeta": -66.449, "epsilon_zeta": -76.955, "bb_type": "BI", "chi": 175.967, "glyco_bond": "anti", "C5prime_xyz": [ -1.532, 8.226, 1.865 ], "P_xyz": [ 0.333, 9.612, 0.665 ], "form": ".", "ssZp": 4.758, "Dp": 4.738, "splay_angle": 35.506, "splay_distance": 5.359, "splay_ratio": 0.312, "d22": null, "d64": null, "eta": 53.176, "theta": -147.402, "eta_prime": 83.569, "theta_prime": -147.358, "eta_base": 95.955, "theta_base": -118.819, "v0": 5.111, "v1": -27.770, "v2": 38.715, "v3": -36.788, "v4": 19.954, "amplitude": 39.483, "phase_angle": 11.323, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.040, "frame": { "rmsd": 0.007, "origin": [ 197.946, 166.988, 59.092 ], "x_axis": [ -0.399, 0.741, 0.540 ], "y_axis": [ -0.458, 0.349, -0.817 ], "z_axis": [ -0.794, -0.574, 0.200 ], "quaternion": [ 0.536, -0.114, -0.622, 0.559 ] } }, { "index": 2728, "index_chain": 50, "chain_name": "B", "nt_resnum": 52, "nt_name": "G", "nt_code": "G", "nt_id": "///B/52", "linked_nts": [ "///B/51", "///B/53" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,A-minor", "alpha": -65.357, "beta": -171.091, "gamma": 63.831, "delta": 86.918, "epsilon": -92.968, "zeta": -148.469, "epsilon_zeta": 55.501, "bb_type": "--", "chi": -164.446, "glyco_bond": "anti", "C5prime_xyz": [ -1.461, 8.700, 0.825 ], "P_xyz": [ 1.070, 9.002, 1.455 ], "form": ".", "ssZp": 3.996, "Dp": 4.499, "splay_angle": 28.355, "splay_distance": 4.647, "splay_ratio": 0.248, "d22": null, "d64": null, "eta": -157.520, "theta": -128.070, "eta_prime": -146.876, "theta_prime": -126.745, "eta_base": -112.743, "theta_base": -95.005, "v0": 0.959, "v1": -20.865, "v2": 31.639, "v3": -31.999, "v4": 19.612, "amplitude": 33.086, "phase_angle": 17.009, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.717, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 194.294, 165.403, 62.679 ], "x_axis": [ -0.614, 0.771, -0.170 ], "y_axis": [ 0.051, -0.176, -0.983 ], "z_axis": [ -0.787, -0.613, 0.069 ], "quaternion": [ 0.264, -0.351, -0.585, 0.682 ] } }, { "index": 2729, "index_chain": 51, "chain_name": "B", "nt_resnum": 53, "nt_name": "U", "nt_code": "U", "nt_id": "///B/53", "linked_nts": [ "///B/52", "///B/54" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BII,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor", "alpha": 95.384, "beta": -89.076, "gamma": 175.863, "delta": 84.358, "epsilon": -95.684, "zeta": -157.743, "epsilon_zeta": 62.059, "bb_type": "BII", "chi": -175.225, "glyco_bond": "anti", "C5prime_xyz": [ -1.301, 8.421, 1.456 ], "P_xyz": [ 0.120, 8.954, -0.687 ], "form": ".", "ssZp": 4.492, "Dp": 4.693, "splay_angle": 40.269, "splay_distance": 6.129, "splay_ratio": 0.347, "d22": 6.273, "d64": 6.459, "eta": 167.872, "theta": 158.025, "eta_prime": -173.613, "theta_prime": 170.997, "eta_base": -130.311, "theta_base": 172.987, "v0": 4.829, "v1": -25.260, "v2": 34.947, "v3": -33.124, "v4": 17.863, "amplitude": 35.600, "phase_angle": 10.996, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.006, "origin": [ 190.030, 163.614, 62.218 ], "x_axis": [ -0.490, 0.575, -0.655 ], "y_axis": [ 0.338, -0.567, -0.751 ], "z_axis": [ -0.803, -0.590, 0.084 ], "quaternion": [ 0.081, -0.498, -0.458, 0.732 ] } }, { "index": 2730, "index_chain": 52, "chain_name": "B", "nt_resnum": 54, "nt_name": "U", "nt_code": "U", "nt_id": "///B/54", "linked_nts": [ "///B/53", "///B/55" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor", "alpha": -50.755, "beta": 115.183, "gamma": 81.334, "delta": 145.883, "epsilon": -65.207, "zeta": 90.526, "epsilon_zeta": 204.267, "bb_type": "--", "chi": -139.898, "glyco_bond": "anti", "C5prime_xyz": [ -1.969, 8.740, -0.172 ], "P_xyz": [ 0.577, 8.402, -0.641 ], "form": ".", "ssZp": 0.121, "Dp": 0.124, "splay_angle": 37.721, "splay_distance": 6.209, "splay_ratio": 0.325, "d22": null, "d64": null, "eta": -107.988, "theta": 112.651, "eta_prime": -115.805, "theta_prime": 102.740, "eta_base": -135.715, "theta_base": 92.145, "v0": -22.842, "v1": 36.522, "v2": -35.471, "v3": 23.199, "v4": -0.399, "amplitude": 37.327, "phase_angle": 161.860, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 187.741, 159.213, 65.819 ], "x_axis": [ -0.472, 0.595, -0.650 ], "y_axis": [ 0.293, -0.590, -0.753 ], "z_axis": [ -0.831, -0.546, 0.104 ], "quaternion": [ 0.103, -0.503, -0.441, 0.736 ] } }, { "index": 2731, "index_chain": 53, "chain_name": "B", "nt_resnum": 55, "nt_name": "A", "nt_code": "A", "nt_id": "///B/55", "linked_nts": [ "///B/54", "///B/56" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor", "alpha": 160.765, "beta": -123.143, "gamma": 34.499, "delta": 78.440, "epsilon": -148.990, "zeta": -79.423, "epsilon_zeta": -69.567, "bb_type": "BI", "chi": -176.112, "glyco_bond": "anti", "C5prime_xyz": [ -1.513, 8.443, 1.439 ], "P_xyz": [ 0.047, 8.482, 3.541 ], "form": "A", "ssZp": 4.719, "Dp": 4.702, "splay_angle": 26.495, "splay_distance": 3.902, "splay_ratio": 0.231, "d22": null, "d64": null, "eta": 114.518, "theta": -160.987, "eta_prime": 95.359, "theta_prime": -149.712, "eta_base": 95.101, "theta_base": -110.176, "v0": 4.163, "v1": -27.173, "v2": 38.662, "v3": -37.287, "v4": 20.862, "amplitude": 39.631, "phase_angle": 12.699, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "23p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.006, "origin": [ 193.911, 159.879, 65.612 ], "x_axis": [ -0.661, 0.218, -0.718 ], "y_axis": [ 0.177, -0.885, -0.431 ], "z_axis": [ -0.729, -0.411, 0.547 ], "quaternion": [ 0.012, -0.412, -0.239, 0.879 ] } }, { "index": 2732, "index_chain": 54, "chain_name": "B", "nt_resnum": 56, "nt_name": "A", "nt_code": "A", "nt_id": "///B/56", "linked_nts": [ "///B/55", "///B/57" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor", "alpha": -53.380, "beta": 162.311, "gamma": 57.601, "delta": 81.297, "epsilon": -126.493, "zeta": -73.403, "epsilon_zeta": -53.090, "bb_type": "--", "chi": -177.906, "glyco_bond": "anti", "C5prime_xyz": [ -1.254, 8.325, 1.561 ], "P_xyz": [ 1.360, 8.415, 1.714 ], "form": ".", "ssZp": 4.768, "Dp": 4.796, "splay_angle": 28.457, "splay_distance": 4.427, "splay_ratio": 0.250, "d22": null, "d64": null, "eta": 178.911, "theta": -125.374, "eta_prime": -169.193, "theta_prime": -122.039, "eta_base": -126.234, "theta_base": -84.884, "v0": 6.661, "v1": -28.232, "v2": 37.984, "v3": -35.165, "v4": 17.984, "amplitude": 38.444, "phase_angle": 8.876, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.811, "filter_rmsd": 0.039, "frame": { "rmsd": 0.005, "origin": [ 190.559, 160.150, 67.591 ], "x_axis": [ -0.506, -0.375, -0.777 ], "y_axis": [ 0.570, -0.821, 0.026 ], "z_axis": [ -0.648, -0.429, 0.629 ], "quaternion": [ -0.275, -0.414, -0.117, 0.860 ] } }, { "index": 2733, "index_chain": 55, "chain_name": "B", "nt_resnum": 57, "nt_name": "G", "nt_code": "G", "nt_id": "///B/57", "linked_nts": [ "///B/56", "///B/58" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop", "alpha": -55.220, "beta": 154.008, "gamma": 63.998, "delta": 81.230, "epsilon": -133.913, "zeta": -61.883, "epsilon_zeta": -72.029, "bb_type": "BI", "chi": -177.660, "glyco_bond": "anti", "C5prime_xyz": [ -1.815, 8.569, 1.493 ], "P_xyz": [ 0.741, 9.096, 1.600 ], "form": ".", "ssZp": 4.619, "Dp": 4.634, "splay_angle": 38.644, "splay_distance": 5.786, "splay_ratio": 0.331, "d22": null, "d64": null, "eta": 169.839, "theta": -119.316, "eta_prime": -165.748, "theta_prime": -116.549, "eta_base": -103.707, "theta_base": -57.930, "v0": -1.459, "v1": -21.079, "v2": 34.244, "v3": -36.059, "v4": 23.663, "amplitude": 36.639, "phase_angle": 20.832, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.551, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 186.616, 158.161, 67.283 ], "x_axis": [ 0.066, -0.832, -0.551 ], "y_axis": [ 0.762, -0.315, 0.566 ], "z_axis": [ -0.644, -0.457, 0.613 ], "quaternion": [ 0.584, 0.438, -0.040, -0.682 ] } }, { "index": 2734, "index_chain": 56, "chain_name": "B", "nt_resnum": 58, "nt_name": "C", "nt_code": "C", "nt_id": "///B/58", "linked_nts": [ "///B/57", "///B/59" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -58.966, "beta": 166.203, "gamma": 48.928, "delta": 84.982, "epsilon": -165.245, "zeta": -90.331, "epsilon_zeta": -74.914, "bb_type": "BI", "chi": -164.526, "glyco_bond": "anti", "C5prime_xyz": [ -0.999, 8.592, 0.860 ], "P_xyz": [ 1.600, 8.479, 1.239 ], "form": "A", "ssZp": 4.409, "Dp": 4.475, "splay_angle": 24.835, "splay_distance": 3.887, "splay_ratio": 0.216, "d22": 4.519, "d64": 4.656, "eta": 157.113, "theta": -130.049, "eta_prime": -170.650, "theta_prime": -135.618, "eta_base": -82.707, "theta_base": -114.095, "v0": 4.742, "v1": -24.572, "v2": 34.044, "v3": -32.264, "v4": 17.368, "amplitude": 34.678, "phase_angle": 10.974, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.802, "filter_rmsd": 0.069, "frame": { "rmsd": 0.008, "origin": [ 186.556, 152.527, 68.600 ], "x_axis": [ 0.774, -0.521, 0.360 ], "y_axis": [ 0.153, 0.706, 0.692 ], "z_axis": [ -0.614, -0.481, 0.626 ], "quaternion": [ 0.881, 0.333, -0.277, -0.191 ] } }, { "index": 2735, "index_chain": 57, "chain_name": "B", "nt_resnum": 59, "nt_name": "U", "nt_code": "U", "nt_id": "///B/59", "linked_nts": [ "///B/58", "///B/60" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 170.207, "beta": -136.328, "gamma": 151.021, "delta": 79.817, "epsilon": -148.501, "zeta": -45.394, "epsilon_zeta": -103.106, "bb_type": "BI", "chi": -177.883, "glyco_bond": "anti", "C5prime_xyz": [ -1.386, 8.423, 1.565 ], "P_xyz": [ 0.872, 9.135, 0.469 ], "form": ".", "ssZp": 4.641, "Dp": 4.657, "splay_angle": 17.955, "splay_distance": 3.707, "splay_ratio": 0.195, "d22": 4.450, "d64": 5.074, "eta": 155.885, "theta": -111.179, "eta_prime": 178.590, "theta_prime": -134.057, "eta_base": -135.751, "theta_base": -118.298, "v0": 4.227, "v1": -26.452, "v2": 37.502, "v3": -36.068, "v4": 20.063, "amplitude": 38.403, "phase_angle": 12.436, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.032, "filter_rmsd": 0.104, "frame": { "rmsd": 0.004, "origin": [ 184.722, 149.478, 70.165 ], "x_axis": [ 0.728, -0.083, 0.680 ], "y_axis": [ -0.299, 0.855, 0.425 ], "z_axis": [ -0.617, -0.512, 0.598 ], "quaternion": [ 0.892, 0.263, -0.364, 0.060 ] } }, { "index": 2736, "index_chain": 58, "chain_name": "B", "nt_resnum": 60, "nt_name": "C", "nt_code": "C", "nt_id": "///B/60", "linked_nts": [ "///B/59", "///B/61" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -178.133, "beta": 157.047, "gamma": 160.301, "delta": 80.625, "epsilon": -142.350, "zeta": -70.850, "epsilon_zeta": -71.500, "bb_type": "BI", "chi": -170.218, "glyco_bond": "anti", "C5prime_xyz": [ -1.270, 8.627, 1.125 ], "P_xyz": [ -0.168, 10.618, -0.175 ], "form": "A", "ssZp": 4.620, "Dp": 4.678, "splay_angle": 23.841, "splay_distance": 3.747, "splay_ratio": 0.209, "d22": 4.447, "d64": 3.903, "eta": 154.916, "theta": -172.608, "eta_prime": 172.949, "theta_prime": -164.180, "eta_base": -143.407, "theta_base": -135.277, "v0": 2.644, "v1": -24.807, "v2": 36.369, "v3": -35.844, "v4": 20.919, "amplitude": 37.595, "phase_angle": 14.675, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1f", "suiteness": 0.427, "filter_rmsd": 0.062, "frame": { "rmsd": 0.003, "origin": [ 185.869, 146.187, 71.430 ], "x_axis": [ 0.482, 0.384, 0.788 ], "y_axis": [ -0.781, 0.595, 0.188 ], "z_axis": [ -0.397, -0.706, 0.587 ], "quaternion": [ 0.816, 0.274, -0.363, 0.357 ] } }, { "index": 2737, "index_chain": 59, "chain_name": "B", "nt_resnum": 61, "nt_name": "U", "nt_code": "U", "nt_id": "///B/61", "linked_nts": [ "///B/60", "///B/62" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -80.671, "beta": -160.022, "gamma": 42.215, "delta": 82.080, "epsilon": -172.545, "zeta": -90.996, "epsilon_zeta": -81.549, "bb_type": "BI", "chi": -155.553, "glyco_bond": "anti", "C5prime_xyz": [ -1.201, 8.650, 0.280 ], "P_xyz": [ 1.230, 9.094, 1.138 ], "form": "A", "ssZp": 4.321, "Dp": 4.481, "splay_angle": 20.813, "splay_distance": 3.231, "splay_ratio": 0.182, "d22": 4.264, "d64": 3.984, "eta": 156.080, "theta": -149.009, "eta_prime": 167.170, "theta_prime": -148.165, "eta_base": -155.658, "theta_base": -128.346, "v0": 4.973, "v1": -26.538, "v2": 36.920, "v3": -35.058, "v4": 18.950, "amplitude": 37.636, "phase_angle": 11.199, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.518, "filter_rmsd": 0.106, "frame": { "rmsd": 0.004, "origin": [ 186.209, 143.460, 73.977 ], "x_axis": [ 0.070, 0.927, 0.368 ], "y_axis": [ -0.949, 0.175, -0.261 ], "z_axis": [ -0.306, -0.331, 0.893 ], "quaternion": [ 0.731, 0.024, -0.230, 0.642 ] } }, { "index": 2738, "index_chain": 60, "chain_name": "B", "nt_resnum": 62, "nt_name": "U", "nt_code": "U", "nt_id": "///B/62", "linked_nts": [ "///B/61", "///B/63" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -178.248, "beta": -139.935, "gamma": 142.465, "delta": 83.856, "epsilon": -147.721, "zeta": -71.406, "epsilon_zeta": -76.316, "bb_type": "BI", "chi": -173.501, "glyco_bond": "anti", "C5prime_xyz": [ -1.397, 8.541, 1.337 ], "P_xyz": [ 1.037, 8.992, 0.488 ], "form": "A", "ssZp": 4.468, "Dp": 4.528, "splay_angle": 22.582, "splay_distance": 3.661, "splay_ratio": 0.199, "d22": 4.628, "d64": 4.723, "eta": 160.212, "theta": -142.073, "eta_prime": 175.656, "theta_prime": -149.845, "eta_base": -152.250, "theta_base": -134.052, "v0": 1.065, "v1": -21.545, "v2": 32.666, "v3": -33.013, "v4": 20.180, "amplitude": 34.145, "phase_angle": 16.920, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.108, "frame": { "rmsd": 0.007, "origin": [ 186.641, 142.485, 77.027 ], "x_axis": [ -0.312, 0.949, -0.034 ], "y_axis": [ -0.910, -0.309, -0.277 ], "z_axis": [ -0.274, -0.055, 0.960 ], "quaternion": [ 0.579, -0.096, -0.103, 0.803 ] } }, { "index": 2739, "index_chain": 61, "chain_name": "B", "nt_resnum": 63, "nt_name": "C", "nt_code": "C", "nt_id": "///B/63", "linked_nts": [ "///B/62", "///B/64" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge", "alpha": -62.193, "beta": -179.128, "gamma": 41.297, "delta": 79.459, "epsilon": -121.951, "zeta": -117.371, "epsilon_zeta": -4.580, "bb_type": "--", "chi": -159.375, "glyco_bond": "anti", "C5prime_xyz": [ -1.474, 8.784, 0.480 ], "P_xyz": [ 0.983, 9.418, 1.097 ], "form": ".", "ssZp": 4.272, "Dp": 4.746, "splay_angle": 74.703, "splay_distance": 10.310, "splay_ratio": 0.612, "d22": null, "d64": null, "eta": 169.386, "theta": -131.915, "eta_prime": 178.905, "theta_prime": -118.095, "eta_base": -150.232, "theta_base": -76.795, "v0": 1.180, "v1": -24.054, "v2": 36.494, "v3": -36.863, "v4": 22.478, "amplitude": 38.140, "phase_angle": 16.892, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.720, "filter_rmsd": 0.060, "frame": { "rmsd": 0.004, "origin": [ 187.500, 143.084, 80.534 ], "x_axis": [ -0.726, 0.654, -0.214 ], "y_axis": [ -0.627, -0.756, -0.187 ], "z_axis": [ -0.284, -0.002, 0.959 ], "quaternion": [ 0.345, -0.134, -0.051, 0.927 ] } }, { "index": 2740, "index_chain": 62, "chain_name": "B", "nt_resnum": 64, "nt_name": "A", "nt_code": "A", "nt_id": "///B/64", "linked_nts": [ "///B/63", "///B/65" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,~C3'-endo,non-pair-contact,bulge,phosphate", "alpha": 46.231, "beta": 135.981, "gamma": 38.107, "delta": 88.161, "epsilon": -61.357, "zeta": 78.391, "epsilon_zeta": 220.252, "bb_type": "--", "chi": -89.720, "glyco_bond": "--", "C5prime_xyz": [ -2.401, 7.145, -3.004 ], "P_xyz": [ -0.164, 6.381, -4.140 ], "form": ".", "ssZp": -1.277, "Dp": 4.277, "splay_angle": 56.163, "splay_distance": 9.339, "splay_ratio": 0.474, "d22": null, "d64": null, "eta": -105.470, "theta": 115.703, "eta_prime": -99.709, "theta_prime": 97.465, "eta_base": -91.870, "theta_base": 101.030, "v0": 3.191, "v1": -22.088, "v2": 31.363, "v3": -30.429, "v4": 17.284, "amplitude": 32.198, "phase_angle": 13.084, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "7d", "suiteness": 0.232, "filter_rmsd": 0.033, "frame": { "rmsd": 0.013, "origin": [ 178.612, 141.432, 85.491 ], "x_axis": [ -0.815, -0.576, -0.070 ], "y_axis": [ 0.527, -0.785, 0.325 ], "z_axis": [ -0.242, 0.228, 0.943 ], "quaternion": [ -0.293, -0.083, 0.147, 0.941 ] } }, { "index": 2741, "index_chain": 63, "chain_name": "B", "nt_resnum": 65, "nt_name": "G", "nt_code": "G", "nt_id": "///B/65", "linked_nts": [ "///B/64", "///B/66" ], "nt_type": "RNA", "dbn": ")", "summary": "turn,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge", "alpha": 143.767, "beta": -137.997, "gamma": 42.867, "delta": 80.480, "epsilon": -145.195, "zeta": -79.016, "epsilon_zeta": -66.179, "bb_type": "BI", "chi": -178.895, "glyco_bond": "anti", "C5prime_xyz": [ -1.719, 8.474, 1.613 ], "P_xyz": [ 0.031, 8.558, 3.571 ], "form": "A", "ssZp": 4.645, "Dp": 4.639, "splay_angle": 23.821, "splay_distance": 3.678, "splay_ratio": 0.210, "d22": null, "d64": null, "eta": 94.801, "theta": -153.403, "eta_prime": 93.204, "theta_prime": -144.993, "eta_base": 129.672, "theta_base": -110.275, "v0": 1.288, "v1": -23.559, "v2": 35.688, "v3": -35.930, "v4": 21.814, "amplitude": 37.254, "phase_angle": 16.673, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 187.716, 143.459, 85.009 ], "x_axis": [ -0.909, 0.015, -0.416 ], "y_axis": [ 0.010, -0.998, -0.059 ], "z_axis": [ -0.416, -0.058, 0.908 ], "quaternion": [ 0.001, -0.213, -0.030, 0.977 ] } }, { "index": 2742, "index_chain": 64, "chain_name": "B", "nt_resnum": 66, "nt_name": "C", "nt_code": "C", "nt_id": "///B/66", "linked_nts": [ "///B/65", "///B/67" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate", "alpha": -61.476, "beta": 175.526, "gamma": 48.562, "delta": 79.981, "epsilon": -140.374, "zeta": -71.149, "epsilon_zeta": -69.225, "bb_type": "BI", "chi": -168.942, "glyco_bond": "anti", "C5prime_xyz": [ -1.225, 8.608, 1.045 ], "P_xyz": [ 1.335, 8.877, 1.511 ], "form": "A", "ssZp": 4.654, "Dp": 4.740, "splay_angle": 28.481, "splay_distance": 4.275, "splay_ratio": 0.246, "d22": null, "d64": null, "eta": 168.552, "theta": -139.474, "eta_prime": 177.925, "theta_prime": -135.499, "eta_base": -141.109, "theta_base": -95.393, "v0": 4.769, "v1": -27.413, "v2": 38.395, "v3": -36.663, "v4": 20.075, "amplitude": 39.215, "phase_angle": 11.739, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.918, "filter_rmsd": 0.063, "frame": { "rmsd": 0.003, "origin": [ 185.859, 145.157, 87.692 ], "x_axis": [ -0.718, -0.585, -0.376 ], "y_axis": [ 0.551, -0.809, 0.206 ], "z_axis": [ -0.425, -0.060, 0.903 ], "quaternion": [ -0.307, -0.216, 0.039, 0.926 ] } }, { "index": 2743, "index_chain": 65, "chain_name": "B", "nt_resnum": 67, "nt_name": "G", "nt_code": "G", "nt_id": "///B/67", "linked_nts": [ "///B/66", "///B/68" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-pair-contact,junction-loop", "alpha": -70.816, "beta": 159.333, "gamma": 69.881, "delta": 82.089, "epsilon": -131.018, "zeta": -66.398, "epsilon_zeta": -64.620, "bb_type": "BI", "chi": 179.014, "glyco_bond": "anti", "C5prime_xyz": [ -1.287, 8.277, 1.720 ], "P_xyz": [ 1.306, 8.535, 1.510 ], "form": ".", "ssZp": 4.809, "Dp": 4.793, "splay_angle": 34.576, "splay_distance": 5.237, "splay_ratio": 0.300, "d22": null, "d64": null, "eta": 168.218, "theta": -122.718, "eta_prime": -172.381, "theta_prime": -121.952, "eta_base": -112.110, "theta_base": -86.229, "v0": 6.642, "v1": -28.148, "v2": 37.815, "v3": -34.975, "v4": 17.913, "amplitude": 38.270, "phase_angle": 8.839, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.523, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 182.455, 143.970, 89.989 ], "x_axis": [ -0.131, -0.978, -0.165 ], "y_axis": [ 0.913, -0.184, 0.365 ], "z_axis": [ -0.387, -0.103, 0.916 ], "quaternion": [ 0.633, 0.185, -0.088, -0.747 ] } }, { "index": 2744, "index_chain": 66, "chain_name": "B", "nt_resnum": 68, "nt_name": "C", "nt_code": "C", "nt_id": "///B/68", "linked_nts": [ "///B/67", "///B/69" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -55.641, "beta": 171.154, "gamma": 53.528, "delta": 78.648, "epsilon": -138.128, "zeta": -82.164, "epsilon_zeta": -55.964, "bb_type": "BI", "chi": -171.773, "glyco_bond": "anti", "C5prime_xyz": [ -1.233, 8.596, 1.220 ], "P_xyz": [ 1.340, 8.872, 1.588 ], "form": "A", "ssZp": 4.683, "Dp": 4.735, "splay_angle": 28.268, "splay_distance": 4.399, "splay_ratio": 0.247, "d22": 4.467, "d64": 5.061, "eta": 170.470, "theta": -146.209, "eta_prime": -167.170, "theta_prime": -141.782, "eta_base": -105.140, "theta_base": -117.375, "v0": 3.607, "v1": -26.562, "v2": 38.277, "v3": -37.204, "v4": 21.149, "amplitude": 39.357, "phase_angle": 13.455, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.782, "filter_rmsd": 0.062, "frame": { "rmsd": 0.003, "origin": [ 180.144, 140.339, 92.974 ], "x_axis": [ 0.646, -0.734, 0.210 ], "y_axis": [ 0.684, 0.678, 0.267 ], "z_axis": [ -0.338, -0.029, 0.941 ], "quaternion": [ 0.903, 0.082, -0.152, -0.393 ] } }, { "index": 2745, "index_chain": 67, "chain_name": "B", "nt_resnum": 69, "nt_name": "C", "nt_code": "C", "nt_id": "///B/69", "linked_nts": [ "///B/68", "///B/70" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -52.021, "beta": 156.328, "gamma": 66.318, "delta": 80.914, "epsilon": -143.601, "zeta": -57.682, "epsilon_zeta": -85.919, "bb_type": "BI", "chi": -173.499, "glyco_bond": "anti", "C5prime_xyz": [ -1.491, 8.666, 1.270 ], "P_xyz": [ 1.085, 9.091, 1.243 ], "form": ".", "ssZp": 4.559, "Dp": 4.601, "splay_angle": 29.470, "splay_distance": 4.564, "splay_ratio": 0.255, "d22": null, "d64": null, "eta": 179.012, "theta": -125.376, "eta_prime": -164.528, "theta_prime": -125.473, "eta_base": -126.228, "theta_base": -72.123, "v0": -0.224, "v1": -22.220, "v2": 34.896, "v3": -35.999, "v4": 22.847, "amplitude": 36.893, "phase_angle": 18.938, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.567, "filter_rmsd": 0.063, "frame": { "rmsd": 0.004, "origin": [ 178.346, 138.271, 96.416 ], "x_axis": [ 0.905, -0.277, 0.322 ], "y_axis": [ 0.269, 0.960, 0.072 ], "z_axis": [ -0.330, 0.022, 0.944 ], "quaternion": [ 0.976, 0.013, -0.167, -0.140 ] } }, { "index": 2746, "index_chain": 68, "chain_name": "B", "nt_resnum": 70, "nt_name": "G", "nt_code": "G", "nt_id": "///B/70", "linked_nts": [ "///B/69", "///B/71" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -68.148, "beta": 167.795, "gamma": 54.887, "delta": 81.781, "epsilon": -145.505, "zeta": -70.446, "epsilon_zeta": -75.058, "bb_type": "BI", "chi": -168.693, "glyco_bond": "anti", "C5prime_xyz": [ -1.349, 8.647, 1.051 ], "P_xyz": [ 1.247, 8.913, 1.344 ], "form": ".", "ssZp": 4.583, "Dp": 4.649, "splay_angle": 62.624, "splay_distance": 10.274, "splay_ratio": 0.527, "d22": null, "d64": null, "eta": 159.887, "theta": -168.696, "eta_prime": -173.508, "theta_prime": 173.850, "eta_base": -92.987, "theta_base": 159.910, "v0": 2.687, "v1": -24.183, "v2": 35.338, "v3": -34.743, "v4": 20.247, "amplitude": 36.500, "phase_angle": 14.497, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.851, "filter_rmsd": 0.003, "frame": { "rmsd": 0.003, "origin": [ 180.489, 138.178, 100.445 ], "x_axis": [ 0.720, 0.654, 0.234 ], "y_axis": [ -0.616, 0.757, -0.218 ], "z_axis": [ -0.320, 0.013, 0.947 ], "quaternion": [ 0.925, -0.062, -0.150, 0.343 ] } }, { "index": 2747, "index_chain": 69, "chain_name": "B", "nt_resnum": 71, "nt_name": "A", "nt_code": "A", "nt_id": "///B/71", "linked_nts": [ "///B/70", "///B/72" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -111.449, "beta": 82.493, "gamma": 175.469, "delta": 81.520, "epsilon": -111.030, "zeta": -74.983, "epsilon_zeta": -36.047, "bb_type": "--", "chi": 162.564, "glyco_bond": "anti", "C5prime_xyz": [ -1.755, 7.859, 2.527 ], "P_xyz": [ -2.106, 10.360, 1.817 ], "form": ".", "ssZp": 4.679, "Dp": 4.742, "splay_angle": 31.398, "splay_distance": 4.822, "splay_ratio": 0.274, "d22": null, "d64": null, "eta": -157.349, "theta": 179.903, "eta_prime": 179.256, "theta_prime": -159.646, "eta_base": 158.148, "theta_base": -99.662, "v0": 3.443, "v1": -25.066, "v2": 35.967, "v3": -34.961, "v4": 19.862, "amplitude": 36.969, "phase_angle": 13.372, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.779, "filter_rmsd": 0.039, "frame": { "rmsd": 0.008, "origin": [ 173.576, 130.705, 101.834 ], "x_axis": [ 0.953, -0.128, 0.276 ], "y_axis": [ 0.145, 0.989, -0.041 ], "z_axis": [ -0.268, 0.079, 0.960 ], "quaternion": [ 0.988, -0.031, -0.138, -0.069 ] } }, { "index": 2748, "index_chain": 70, "chain_name": "B", "nt_resnum": 72, "nt_name": "U", "nt_code": "U", "nt_id": "///B/72", "linked_nts": [ "///B/71", "///B/73" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -50.165, "beta": 167.074, "gamma": 38.236, "delta": 79.893, "epsilon": -144.863, "zeta": -69.403, "epsilon_zeta": -75.460, "bb_type": "BI", "chi": -169.590, "glyco_bond": "anti", "C5prime_xyz": [ -1.455, 8.612, 1.092 ], "P_xyz": [ 1.036, 8.949, 1.832 ], "form": "A", "ssZp": 4.611, "Dp": 4.673, "splay_angle": 25.653, "splay_distance": 4.042, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 153.538, "theta": -139.080, "eta_prime": 178.264, "theta_prime": -135.470, "eta_base": -108.849, "theta_base": -100.057, "v0": 2.480, "v1": -25.107, "v2": 36.999, "v3": -36.550, "v4": 21.456, "amplitude": 38.296, "phase_angle": 14.956, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.208, "filter_rmsd": 0.103, "frame": { "rmsd": 0.003, "origin": [ 175.542, 130.623, 106.237 ], "x_axis": [ 0.636, 0.771, 0.028 ], "y_axis": [ -0.720, 0.606, -0.338 ], "z_axis": [ -0.277, 0.195, 0.941 ], "quaternion": [ 0.892, -0.149, -0.085, 0.418 ] } }, { "index": 2749, "index_chain": 71, "chain_name": "B", "nt_resnum": 73, "nt_name": "G", "nt_code": "G", "nt_id": "///B/73", "linked_nts": [ "///B/72", "///B/74" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -59.304, "beta": 164.816, "gamma": 57.767, "delta": 79.641, "epsilon": -142.493, "zeta": -77.962, "epsilon_zeta": -64.531, "bb_type": "BI", "chi": -173.956, "glyco_bond": "anti", "C5prime_xyz": [ -1.682, 8.612, 1.308 ], "P_xyz": [ 0.865, 9.141, 1.609 ], "form": "A", "ssZp": 4.644, "Dp": 4.660, "splay_angle": 24.763, "splay_distance": 3.786, "splay_ratio": 0.215, "d22": null, "d64": null, "eta": 169.673, "theta": -143.013, "eta_prime": -171.964, "theta_prime": -140.925, "eta_base": -118.299, "theta_base": -98.113, "v0": 0.452, "v1": -23.245, "v2": 35.944, "v3": -36.669, "v4": 22.842, "amplitude": 37.781, "phase_angle": 17.939, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.921, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 176.660, 132.089, 109.835 ], "x_axis": [ 0.063, 0.971, -0.229 ], "y_axis": [ -0.949, -0.013, -0.314 ], "z_axis": [ -0.308, 0.237, 0.921 ], "quaternion": [ 0.702, -0.196, -0.028, 0.684 ] } }, { "index": 2750, "index_chain": 72, "chain_name": "B", "nt_resnum": 74, "nt_name": "G", "nt_code": "G", "nt_id": "///B/74", "linked_nts": [ "///B/73", "///B/75" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -51.049, "beta": 159.931, "gamma": 50.991, "delta": 81.536, "epsilon": -171.762, "zeta": -82.686, "epsilon_zeta": -89.076, "bb_type": "BI", "chi": -169.754, "glyco_bond": "anti", "C5prime_xyz": [ -1.318, 8.589, 1.093 ], "P_xyz": [ 1.289, 8.780, 1.260 ], "form": "A", "ssZp": 4.483, "Dp": 4.474, "splay_angle": 26.133, "splay_distance": 3.967, "splay_ratio": 0.228, "d22": null, "d64": null, "eta": 164.920, "theta": -131.369, "eta_prime": -173.459, "theta_prime": -136.377, "eta_base": -108.413, "theta_base": -102.056, "v0": 3.457, "v1": -25.073, "v2": 36.022, "v3": -35.056, "v4": 19.940, "amplitude": 37.034, "phase_angle": 13.427, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.766, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 176.437, 134.694, 112.572 ], "x_axis": [ -0.632, 0.704, -0.324 ], "y_axis": [ -0.729, -0.682, -0.057 ], "z_axis": [ -0.261, 0.201, 0.944 ], "quaternion": [ 0.397, -0.162, 0.040, 0.903 ] } }, { "index": 2751, "index_chain": 73, "chain_name": "B", "nt_resnum": 75, "nt_name": "U", "nt_code": "U", "nt_id": "///B/75", "linked_nts": [ "///B/74", "///B/76" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 175.207, "beta": -135.810, "gamma": 146.593, "delta": 81.294, "epsilon": -134.163, "zeta": -89.684, "epsilon_zeta": -44.479, "bb_type": "BI", "chi": 174.837, "glyco_bond": "anti", "C5prime_xyz": [ -1.419, 8.239, 1.968 ], "P_xyz": [ 1.018, 8.814, 1.243 ], "form": "A", "ssZp": 4.687, "Dp": 4.707, "splay_angle": 27.748, "splay_distance": 4.232, "splay_ratio": 0.242, "d22": null, "d64": null, "eta": 162.551, "theta": -150.423, "eta_prime": -176.301, "theta_prime": -154.686, "eta_base": -117.761, "theta_base": -141.445, "v0": 3.247, "v1": -24.860, "v2": 35.887, "v3": -35.013, "v4": 20.028, "amplitude": 36.939, "phase_angle": 13.704, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.010, "filter_rmsd": 0.109, "frame": { "rmsd": 0.006, "origin": [ 175.200, 137.246, 115.347 ], "x_axis": [ -0.963, 0.078, -0.259 ], "y_axis": [ -0.119, -0.982, 0.147 ], "z_axis": [ -0.243, 0.173, 0.955 ], "quaternion": [ 0.050, -0.127, 0.081, 0.987 ] } }, { "index": 2752, "index_chain": 74, "chain_name": "B", "nt_resnum": 76, "nt_name": "A", "nt_code": "A", "nt_id": "///B/76", "linked_nts": [ "///B/75", "///B/77" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper", "alpha": -52.210, "beta": 162.073, "gamma": 50.463, "delta": 79.153, "epsilon": -130.210, "zeta": -67.157, "epsilon_zeta": -63.053, "bb_type": "BI", "chi": -177.794, "glyco_bond": "anti", "C5prime_xyz": [ -1.503, 8.435, 1.530 ], "P_xyz": [ 1.056, 8.754, 1.951 ], "form": ".", "ssZp": 4.757, "Dp": 4.765, "splay_angle": 33.718, "splay_distance": 5.077, "splay_ratio": 0.291, "d22": null, "d64": null, "eta": 172.758, "theta": -125.637, "eta_prime": -177.755, "theta_prime": -121.475, "eta_base": -149.261, "theta_base": -74.270, "v0": 3.002, "v1": -25.808, "v2": 37.614, "v3": -36.910, "v4": 21.364, "amplitude": 38.813, "phase_angle": 14.280, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.629, "filter_rmsd": 0.038, "frame": { "rmsd": 0.005, "origin": [ 175.187, 140.124, 118.449 ], "x_axis": [ -0.920, -0.370, -0.132 ], "y_axis": [ 0.347, -0.923, 0.165 ], "z_axis": [ -0.183, 0.106, 0.977 ], "quaternion": [ -0.184, -0.081, 0.069, 0.977 ] } }, { "index": 2753, "index_chain": 75, "chain_name": "B", "nt_resnum": 77, "nt_name": "G", "nt_code": "G", "nt_id": "///B/77", "linked_nts": [ "///B/76", "///B/78" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper", "alpha": -63.268, "beta": 162.657, "gamma": 59.535, "delta": 80.141, "epsilon": -143.817, "zeta": -68.234, "epsilon_zeta": -75.583, "bb_type": "BI", "chi": -179.048, "glyco_bond": "anti", "C5prime_xyz": [ -1.423, 8.420, 1.611 ], "P_xyz": [ 1.172, 8.686, 1.794 ], "form": "A", "ssZp": 4.733, "Dp": 4.718, "splay_angle": 27.790, "splay_distance": 4.173, "splay_ratio": 0.243, "d22": null, "d64": null, "eta": 161.431, "theta": -135.762, "eta_prime": -172.989, "theta_prime": -134.346, "eta_base": -98.725, "theta_base": -97.339, "v0": 4.599, "v1": -27.216, "v2": 38.261, "v3": -36.644, "v4": 20.202, "amplitude": 39.116, "phase_angle": 12.000, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.757, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 171.395, 138.730, 121.525 ], "x_axis": [ -0.206, -0.979, 0.009 ], "y_axis": [ 0.969, -0.203, 0.143 ], "z_axis": [ -0.138, 0.038, 0.990 ], "quaternion": [ 0.629, 0.042, -0.058, -0.774 ] } }, { "index": 2754, "index_chain": 76, "chain_name": "B", "nt_resnum": 78, "nt_name": "U", "nt_code": "U", "nt_id": "///B/78", "linked_nts": [ "///B/77", "///B/79" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop", "alpha": -69.150, "beta": 174.135, "gamma": 63.214, "delta": 84.207, "epsilon": -170.291, "zeta": -84.670, "epsilon_zeta": -85.621, "bb_type": "BI", "chi": -172.809, "glyco_bond": "anti", "C5prime_xyz": [ -1.304, 8.482, 1.308 ], "P_xyz": [ 1.289, 8.649, 1.679 ], "form": ".", "ssZp": 4.403, "Dp": 4.432, "splay_angle": 35.140, "splay_distance": 5.437, "splay_ratio": 0.305, "d22": 6.150, "d64": 6.724, "eta": 168.517, "theta": -169.543, "eta_prime": -169.543, "theta_prime": -171.904, "eta_base": -109.249, "theta_base": -178.926, "v0": 4.155, "v1": -24.698, "v2": 34.679, "v3": -33.248, "v4": 18.368, "amplitude": 35.459, "phase_angle": 12.039, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.810, "filter_rmsd": 0.106, "frame": { "rmsd": 0.005, "origin": [ 169.501, 137.015, 124.823 ], "x_axis": [ 0.551, -0.829, 0.096 ], "y_axis": [ 0.829, 0.557, 0.049 ], "z_axis": [ -0.094, 0.052, 0.994 ], "quaternion": [ 0.881, -0.001, -0.054, -0.471 ] } }, { "index": 2755, "index_chain": 77, "chain_name": "B", "nt_resnum": 79, "nt_name": "C", "nt_code": "C", "nt_id": "///B/79", "linked_nts": [ "///B/78", "///B/80" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -71.644, "beta": -176.112, "gamma": 61.052, "delta": 80.636, "epsilon": -135.850, "zeta": -67.205, "epsilon_zeta": -68.644, "bb_type": "BI", "chi": -160.228, "glyco_bond": "anti", "C5prime_xyz": [ -1.333, 8.769, 0.528 ], "P_xyz": [ 1.234, 9.211, 0.740 ], "form": ".", "ssZp": 4.377, "Dp": 4.689, "splay_angle": 30.369, "splay_distance": 4.794, "splay_ratio": 0.262, "d22": null, "d64": null, "eta": -178.392, "theta": -129.851, "eta_prime": 179.280, "theta_prime": -126.209, "eta_base": 173.677, "theta_base": -83.099, "v0": 1.732, "v1": -24.253, "v2": 36.272, "v3": -36.280, "v4": 21.785, "amplitude": 37.740, "phase_angle": 16.033, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.598, "filter_rmsd": 0.060, "frame": { "rmsd": 0.006, "origin": [ 164.654, 138.959, 126.336 ], "x_axis": [ 0.592, -0.772, 0.232 ], "y_axis": [ 0.749, 0.633, 0.196 ], "z_axis": [ -0.298, 0.058, 0.953 ], "quaternion": [ 0.891, 0.039, -0.149, -0.427 ] } }, { "index": 2756, "index_chain": 78, "chain_name": "B", "nt_resnum": 80, "nt_name": "G", "nt_code": "G", "nt_id": "///B/80", "linked_nts": [ "///B/79", "///B/81" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -59.468, "beta": 174.669, "gamma": 45.545, "delta": 81.840, "epsilon": -162.493, "zeta": -78.591, "epsilon_zeta": -83.901, "bb_type": "BI", "chi": -163.753, "glyco_bond": "anti", "C5prime_xyz": [ -1.283, 8.687, 0.762 ], "P_xyz": [ 1.253, 9.039, 1.314 ], "form": "A", "ssZp": 4.451, "Dp": 4.526, "splay_angle": 21.184, "splay_distance": 3.628, "splay_ratio": 0.194, "d22": null, "d64": null, "eta": 160.873, "theta": -129.141, "eta_prime": -177.324, "theta_prime": -137.858, "eta_base": -114.985, "theta_base": -116.110, "v0": 2.751, "v1": -24.308, "v2": 35.458, "v3": -34.861, "v4": 20.245, "amplitude": 36.610, "phase_angle": 14.413, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.821, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 166.043, 136.892, 130.432 ], "x_axis": [ 0.994, -0.008, -0.107 ], "y_axis": [ 0.005, 1.000, -0.024 ], "z_axis": [ 0.107, 0.023, 0.994 ], "quaternion": [ 0.998, -0.012, 0.054, -0.003 ] } }, { "index": 2757, "index_chain": 79, "chain_name": "B", "nt_resnum": 81, "nt_name": "G", "nt_code": "G", "nt_id": "///B/81", "linked_nts": [ "///B/80", "///B/82" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 154.512, "beta": -157.091, "gamma": 171.833, "delta": 81.549, "epsilon": -125.089, "zeta": -90.152, "epsilon_zeta": -34.937, "bb_type": "--", "chi": 178.855, "glyco_bond": "anti", "C5prime_xyz": [ -1.211, 8.303, 1.763 ], "P_xyz": [ 0.628, 9.883, 0.800 ], "form": "A", "ssZp": 4.762, "Dp": 4.774, "splay_angle": 25.738, "splay_distance": 4.052, "splay_ratio": 0.227, "d22": null, "d64": null, "eta": 161.391, "theta": -161.252, "eta_prime": 176.461, "theta_prime": -156.645, "eta_base": -140.674, "theta_base": -130.942, "v0": 6.071, "v1": -27.626, "v2": 37.611, "v3": -35.149, "v4": 18.350, "amplitude": 38.157, "phase_angle": 9.707, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.845, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 167.469, 134.970, 133.159 ], "x_axis": [ 0.856, 0.494, -0.152 ], "y_axis": [ -0.480, 0.869, 0.120 ], "z_axis": [ 0.191, -0.030, 0.981 ], "quaternion": [ 0.963, 0.039, 0.089, 0.253 ] } }, { "index": 2758, "index_chain": 80, "chain_name": "B", "nt_resnum": 82, "nt_name": "G", "nt_code": "G", "nt_id": "///B/82", "linked_nts": [ "///B/81", "///B/83" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -39.459, "beta": 160.555, "gamma": 40.770, "delta": 78.794, "epsilon": -160.165, "zeta": -99.695, "epsilon_zeta": -60.471, "bb_type": "BI", "chi": -167.352, "glyco_bond": "anti", "C5prime_xyz": [ -1.546, 8.716, 0.943 ], "P_xyz": [ 0.977, 9.163, 1.420 ], "form": "A", "ssZp": 4.528, "Dp": 4.559, "splay_angle": 23.199, "splay_distance": 3.751, "splay_ratio": 0.207, "d22": null, "d64": null, "eta": 167.362, "theta": -138.854, "eta_prime": -176.982, "theta_prime": -143.569, "eta_base": -138.421, "theta_base": -118.767, "v0": 0.576, "v1": -23.600, "v2": 36.438, "v3": -37.118, "v4": 23.031, "amplitude": 38.267, "phase_angle": 17.785, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.262, "filter_rmsd": 0.009, "frame": { "rmsd": 0.009, "origin": [ 169.823, 133.612, 136.164 ], "x_axis": [ 0.441, 0.883, -0.160 ], "y_axis": [ -0.866, 0.465, 0.184 ], "z_axis": [ 0.237, 0.058, 0.970 ], "quaternion": [ 0.848, 0.037, 0.117, 0.516 ] } }, { "index": 2759, "index_chain": 81, "chain_name": "B", "nt_resnum": 83, "nt_name": "G", "nt_code": "G", "nt_id": "///B/83", "linked_nts": [ "///B/82", "///B/84" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": 148.204, "beta": -130.186, "gamma": 173.165, "delta": 82.474, "epsilon": -84.725, "zeta": -131.836, "epsilon_zeta": 47.111, "bb_type": "--", "chi": 169.412, "glyco_bond": "anti", "C5prime_xyz": [ -1.552, 8.119, 2.217 ], "P_xyz": [ 0.503, 9.420, 1.260 ], "form": "A", "ssZp": 4.625, "Dp": 4.653, "splay_angle": 20.901, "splay_distance": 3.427, "splay_ratio": 0.184, "d22": null, "d64": null, "eta": -179.656, "theta": -138.831, "eta_prime": -170.606, "theta_prime": -147.294, "eta_base": -131.214, "theta_base": -124.523, "v0": 3.588, "v1": -25.047, "v2": 35.809, "v3": -34.715, "v4": 19.648, "amplitude": 36.772, "phase_angle": 13.141, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1c", "suiteness": 0.232, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 172.579, 133.838, 138.698 ], "x_axis": [ -0.050, 0.998, -0.048 ], "y_axis": [ -0.967, -0.036, 0.254 ], "z_axis": [ 0.252, 0.059, 0.966 ], "quaternion": [ 0.685, 0.071, 0.109, 0.716 ] } }, { "index": 2760, "index_chain": 82, "chain_name": "B", "nt_resnum": 84, "nt_name": "G", "nt_code": "G", "nt_id": "///B/84", "linked_nts": [ "///B/83", "///B/85" ], "nt_type": "RNA", "dbn": "(", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,splayed-apart", "alpha": 84.449, "beta": -98.279, "gamma": -168.372, "delta": 81.875, "epsilon": -106.067, "zeta": -85.651, "epsilon_zeta": -20.416, "bb_type": "--", "chi": 160.339, "glyco_bond": "anti", "C5prime_xyz": [ -1.707, 7.757, 2.614 ], "P_xyz": [ -0.299, 9.514, 1.288 ], "form": ".", "ssZp": 4.762, "Dp": 4.811, "splay_angle": 92.673, "splay_distance": 12.450, "splay_ratio": 0.724, "d22": null, "d64": null, "eta": 155.977, "theta": -139.250, "eta_prime": 173.886, "theta_prime": 174.832, "eta_base": -141.972, "theta_base": 124.449, "v0": 6.026, "v1": -27.698, "v2": 37.720, "v3": -35.206, "v4": 18.427, "amplitude": 38.270, "phase_angle": 9.731, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 174.836, 134.740, 141.114 ], "x_axis": [ -0.483, 0.875, 0.024 ], "y_axis": [ -0.836, -0.469, 0.287 ], "z_axis": [ 0.262, 0.118, 0.958 ], "quaternion": [ 0.502, 0.084, 0.119, 0.853 ] } }, { "index": 2761, "index_chain": 83, "chain_name": "B", "nt_resnum": 85, "nt_name": "U", "nt_code": "U", "nt_id": "///B/85", "linked_nts": [ "///B/84", "///B/86" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-stack,ss-non-loop,splayed-apart", "alpha": -174.501, "beta": 140.908, "gamma": 66.102, "delta": 147.598, "epsilon": -89.130, "zeta": -65.759, "epsilon_zeta": -23.371, "bb_type": "--", "chi": -130.767, "glyco_bond": "anti", "C5prime_xyz": [ -2.107, 8.676, -0.653 ], "P_xyz": [ 0.497, 8.902, -0.501 ], "form": ".", "ssZp": 0.620, "Dp": 0.625, "splay_angle": 82.927, "splay_distance": 12.000, "splay_ratio": 0.667, "d22": 9.020, "d64": 8.766, "eta": 55.159, "theta": -38.488, "eta_prime": 104.392, "theta_prime": -59.836, "eta_base": 64.163, "theta_base": -32.915, "v0": -23.450, "v1": 37.647, "v2": -36.600, "v3": 24.053, "v4": -0.548, "amplitude": 38.473, "phase_angle": 162.048, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1z", "suiteness": 0.050, "filter_rmsd": 0.102, "frame": { "rmsd": 0.003, "origin": [ 179.070, 123.337, 143.770 ], "x_axis": [ -0.803, -0.527, -0.279 ], "y_axis": [ -0.596, 0.724, 0.346 ], "z_axis": [ 0.020, 0.445, -0.896 ], "quaternion": [ 0.081, -0.304, 0.925, 0.214 ] } }, { "index": 2762, "index_chain": 84, "chain_name": "B", "nt_resnum": 86, "nt_name": "U", "nt_code": "U", "nt_id": "///B/86", "linked_nts": [ "///B/85", null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "break,~C2'-endo,non-stack,non-pair-contact,ss-non-loop", "alpha": -79.484, "beta": -178.775, "gamma": 73.767, "delta": 147.590, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -66.224, "glyco_bond": "--", "C5prime_xyz": [ -3.154, 6.645, -3.079 ], "P_xyz": [ -0.889, 6.709, -4.414 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": -19.682, "v1": 34.038, "v2": -34.684, "v3": 24.210, "v4": -3.052, "amplitude": 35.733, "phase_angle": 166.079, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "22p", "cluster": "2[", "suiteness": 0.292, "filter_rmsd": 0.099, "frame": { "rmsd": 0.008, "origin": [ 172.199, 133.165, 144.206 ], "x_axis": [ -0.527, -0.109, 0.843 ], "y_axis": [ 0.724, 0.461, 0.512 ], "z_axis": [ -0.445, 0.880, -0.165 ], "quaternion": [ -0.439, 0.210, 0.734, 0.475 ] } }, { "index": 2763, "index_chain": 85, "chain_name": "B", "nt_resnum": 88, "nt_name": "C", "nt_code": "C", "nt_id": "///B/88", "linked_nts": [ null, "///B/89" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack", "alpha": null, "beta": 154.258, "gamma": 179.000, "delta": 81.583, "epsilon": -160.276, "zeta": -70.594, "epsilon_zeta": -89.682, "bb_type": "BI", "chi": -162.657, "glyco_bond": "anti", "C5prime_xyz": [ -1.402, 8.766, 0.674 ], "P_xyz": [ -0.884, 10.991, -0.607 ], "form": "A", "ssZp": 4.439, "Dp": 4.524, "splay_angle": 21.886, "splay_distance": 3.530, "splay_ratio": 0.193, "d22": 4.360, "d64": 4.673, "eta": null, "theta": 164.228, "eta_prime": null, "theta_prime": 175.646, "eta_base": null, "theta_base": -158.860, "v0": 0.832, "v1": -22.989, "v2": 35.100, "v3": -35.577, "v4": 21.933, "amplitude": 36.767, "phase_angle": 17.321, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.065, "frame": { "rmsd": 0.004, "origin": [ 174.713, 134.770, 141.831 ], "x_axis": [ -0.460, 0.876, 0.144 ], "y_axis": [ 0.863, 0.479, -0.158 ], "z_axis": [ -0.208, 0.052, -0.977 ], "quaternion": [ -0.103, 0.509, 0.854, -0.031 ] } }, { "index": 2764, "index_chain": 86, "chain_name": "B", "nt_resnum": 89, "nt_name": "C", "nt_code": "C", "nt_id": "///B/89", "linked_nts": [ "///B/88", "///B/90" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -68.581, "beta": 169.423, "gamma": 62.042, "delta": 80.138, "epsilon": 173.732, "zeta": -82.842, "epsilon_zeta": -103.426, "bb_type": "BI", "chi": -167.018, "glyco_bond": "anti", "C5prime_xyz": [ -1.597, 8.776, 0.879 ], "P_xyz": [ 0.959, 9.365, 1.002 ], "form": "A", "ssZp": 4.250, "Dp": 4.259, "splay_angle": 24.010, "splay_distance": 3.707, "splay_ratio": 0.210, "d22": 4.772, "d64": 4.776, "eta": 166.680, "theta": -151.985, "eta_prime": -175.064, "theta_prime": -155.531, "eta_base": -139.351, "theta_base": -136.071, "v0": -1.140, "v1": -21.625, "v2": 34.895, "v3": -36.464, "v4": 23.690, "amplitude": 37.199, "phase_angle": 20.273, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.808, "filter_rmsd": 0.058, "frame": { "rmsd": 0.007, "origin": [ 172.485, 134.064, 139.187 ], "x_axis": [ -0.038, 0.998, 0.056 ], "y_axis": [ 0.967, 0.051, -0.249 ], "z_axis": [ -0.252, 0.045, -0.967 ], "quaternion": [ -0.107, 0.685, 0.717, -0.071 ] } }, { "index": 2765, "index_chain": 87, "chain_name": "B", "nt_resnum": 90, "nt_name": "C", "nt_code": "C", "nt_id": "///B/90", "linked_nts": [ "///B/89", "///B/91" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -162.114, "beta": -137.749, "gamma": 127.427, "delta": 79.596, "epsilon": -144.872, "zeta": -78.758, "epsilon_zeta": -66.114, "bb_type": "BI", "chi": -175.412, "glyco_bond": "anti", "C5prime_xyz": [ -1.555, 8.642, 1.397 ], "P_xyz": [ 1.001, 8.981, 0.975 ], "form": "A", "ssZp": 4.557, "Dp": 4.585, "splay_angle": 22.930, "splay_distance": 3.652, "splay_ratio": 0.202, "d22": 4.443, "d64": 4.544, "eta": 166.024, "theta": -143.433, "eta_prime": 177.000, "theta_prime": -148.403, "eta_base": -149.891, "theta_base": -127.465, "v0": -1.320, "v1": -21.331, "v2": 34.630, "v3": -36.363, "v4": 23.734, "amplitude": 36.999, "phase_angle": 20.611, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.063, "frame": { "rmsd": 0.004, "origin": [ 169.829, 133.846, 136.610 ], "x_axis": [ 0.455, 0.889, -0.061 ], "y_axis": [ 0.852, -0.454, -0.259 ], "z_axis": [ -0.258, 0.066, -0.964 ], "quaternion": [ -0.096, 0.847, 0.514, -0.094 ] } }, { "index": 2766, "index_chain": 88, "chain_name": "B", "nt_resnum": 91, "nt_name": "C", "nt_code": "C", "nt_id": "///B/91", "linked_nts": [ "///B/90", "///B/92" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack", "alpha": -51.535, "beta": 171.557, "gamma": 42.171, "delta": 80.677, "epsilon": -153.682, "zeta": -75.939, "epsilon_zeta": -77.744, "bb_type": "BI", "chi": -164.992, "glyco_bond": "anti", "C5prime_xyz": [ -1.406, 8.740, 0.807 ], "P_xyz": [ 1.092, 9.191, 1.447 ], "form": "A", "ssZp": 4.484, "Dp": 4.574, "splay_angle": 27.232, "splay_distance": 4.235, "splay_ratio": 0.236, "d22": 4.563, "d64": 4.580, "eta": 167.807, "theta": -153.349, "eta_prime": -179.759, "theta_prime": -149.988, "eta_base": -140.277, "theta_base": -126.573, "v0": 0.882, "v1": -23.277, "v2": 35.571, "v3": -36.094, "v4": 22.160, "amplitude": 37.256, "phase_angle": 17.298, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.677, "filter_rmsd": 0.059, "frame": { "rmsd": 0.005, "origin": [ 167.694, 135.261, 134.008 ], "x_axis": [ 0.857, 0.493, -0.151 ], "y_axis": [ 0.466, -0.865, -0.184 ], "z_axis": [ -0.222, 0.087, -0.971 ], "quaternion": [ -0.071, 0.961, 0.250, -0.097 ] } }, { "index": 2767, "index_chain": 89, "chain_name": "B", "nt_resnum": 92, "nt_name": "C", "nt_code": "C", "nt_id": "///B/92", "linked_nts": [ "///B/91", "///B/93" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -64.771, "beta": -176.497, "gamma": 48.142, "delta": 82.444, "epsilon": -159.177, "zeta": -79.827, "epsilon_zeta": -79.350, "bb_type": "BI", "chi": -167.425, "glyco_bond": "anti", "C5prime_xyz": [ -1.252, 8.618, 0.990 ], "P_xyz": [ 1.227, 8.877, 1.780 ], "form": ".", "ssZp": 4.518, "Dp": 4.562, "splay_angle": 27.961, "splay_distance": 4.364, "splay_ratio": 0.244, "d22": 5.032, "d64": 5.413, "eta": 169.916, "theta": -159.535, "eta_prime": 178.664, "theta_prime": -157.054, "eta_base": -148.270, "theta_base": -148.200, "v0": 3.685, "v1": -25.145, "v2": 35.839, "v3": -34.727, "v4": 19.578, "amplitude": 36.783, "phase_angle": 13.004, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.905, "filter_rmsd": 0.061, "frame": { "rmsd": 0.005, "origin": [ 166.280, 137.082, 130.455 ], "x_axis": [ 0.998, -0.036, 0.050 ], "y_axis": [ -0.036, -0.999, 0.012 ], "z_axis": [ 0.050, -0.014, -0.999 ], "quaternion": [ 0.007, 1.000, -0.018, 0.025 ] } }, { "index": 2768, "index_chain": 90, "chain_name": "B", "nt_resnum": 93, "nt_name": "U", "nt_code": "U", "nt_id": "///B/93", "linked_nts": [ "///B/92", "///B/94" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -60.613, "beta": 173.959, "gamma": 57.966, "delta": 83.065, "epsilon": -160.900, "zeta": -9.473, "epsilon_zeta": -151.427, "bb_type": "--", "chi": -165.971, "glyco_bond": "anti", "C5prime_xyz": [ -1.471, 8.679, 0.877 ], "P_xyz": [ 1.082, 9.094, 1.283 ], "form": ".", "ssZp": 4.392, "Dp": 4.458, "splay_angle": 27.172, "splay_distance": 4.990, "splay_ratio": 0.255, "d22": null, "d64": null, "eta": 177.351, "theta": -100.140, "eta_prime": -173.570, "theta_prime": -115.669, "eta_base": -156.952, "theta_base": -94.045, "v0": 0.458, "v1": -21.891, "v2": 33.755, "v3": -34.464, "v4": 21.434, "amplitude": 35.472, "phase_angle": 17.897, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.864, "filter_rmsd": 0.103, "frame": { "rmsd": 0.004, "origin": [ 165.063, 139.450, 126.996 ], "x_axis": [ 0.937, -0.343, 0.060 ], "y_axis": [ -0.344, -0.939, 0.009 ], "z_axis": [ 0.053, -0.029, -0.998 ], "quaternion": [ 0.010, 0.984, -0.175, 0.029 ] } }, { "index": 2769, "index_chain": 91, "chain_name": "B", "nt_resnum": 94, "nt_name": "G", "nt_code": "G", "nt_id": "///B/94", "linked_nts": [ "///B/93", "///B/95" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,cap-acceptor", "alpha": -163.210, "beta": 122.485, "gamma": 161.996, "delta": 83.256, "epsilon": -105.392, "zeta": -85.277, "epsilon_zeta": -20.115, "bb_type": "--", "chi": -179.971, "glyco_bond": "anti", "C5prime_xyz": [ -1.495, 8.383, 1.687 ], "P_xyz": [ -1.029, 10.724, 0.620 ], "form": ".", "ssZp": 4.646, "Dp": 4.720, "splay_angle": 24.367, "splay_distance": 4.631, "splay_ratio": 0.232, "d22": null, "d64": null, "eta": 170.443, "theta": -147.524, "eta_prime": -173.453, "theta_prime": -145.993, "eta_base": -127.806, "theta_base": -111.141, "v0": 3.387, "v1": -24.581, "v2": 35.195, "v3": -34.241, "v4": 19.486, "amplitude": 36.177, "phase_angle": 13.377, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.008, "frame": { "rmsd": 0.008, "origin": [ 168.714, 139.900, 123.624 ], "x_axis": [ 0.603, -0.796, 0.058 ], "y_axis": [ -0.795, -0.605, -0.046 ], "z_axis": [ 0.071, -0.019, -0.997 ], "quaternion": [ -0.008, 0.895, -0.444, 0.036 ] } }, { "index": 2770, "index_chain": 92, "chain_name": "B", "nt_resnum": 95, "nt_name": "U", "nt_code": "U", "nt_id": "///B/95", "linked_nts": [ "///B/94", "///B/96" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-donor", "alpha": 81.748, "beta": -128.422, "gamma": -118.025, "delta": 85.498, "epsilon": -149.732, "zeta": -76.576, "epsilon_zeta": -73.156, "bb_type": "BI", "chi": -175.587, "glyco_bond": "anti", "C5prime_xyz": [ -1.304, 8.426, 1.477 ], "P_xyz": [ -0.899, 10.900, 0.756 ], "form": ".", "ssZp": 4.456, "Dp": 4.523, "splay_angle": 35.604, "splay_distance": 5.392, "splay_ratio": 0.306, "d22": null, "d64": null, "eta": 176.524, "theta": -155.705, "eta_prime": -168.497, "theta_prime": -142.815, "eta_base": -116.340, "theta_base": -72.063, "v0": 2.774, "v1": -22.473, "v2": 32.489, "v3": -31.847, "v4": 18.380, "amplitude": 33.488, "phase_angle": 14.027, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.106, "frame": { "rmsd": 0.007, "origin": [ 172.167, 138.192, 121.054 ], "x_axis": [ 0.057, -0.996, 0.066 ], "y_axis": [ -0.984, -0.067, -0.162 ], "z_axis": [ 0.166, -0.056, -0.984 ], "quaternion": [ -0.037, 0.726, -0.682, 0.080 ] } }, { "index": 2771, "index_chain": 93, "chain_name": "B", "nt_resnum": 96, "nt_name": "G", "nt_code": "G", "nt_id": "///B/96", "linked_nts": [ "///B/95", "///B/97" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": 158.053, "beta": -124.383, "gamma": 141.429, "delta": 79.395, "epsilon": -117.461, "zeta": -88.863, "epsilon_zeta": -28.598, "bb_type": "--", "chi": 178.845, "glyco_bond": "anti", "C5prime_xyz": [ -1.591, 8.450, 1.715 ], "P_xyz": [ 0.832, 8.800, 0.835 ], "form": ".", "ssZp": 4.724, "Dp": 4.740, "splay_angle": 68.476, "splay_distance": 10.891, "splay_ratio": 0.567, "d22": null, "d64": null, "eta": 144.354, "theta": -172.948, "eta_prime": -178.901, "theta_prime": 163.981, "eta_base": -88.270, "theta_base": 146.758, "v0": 1.093, "v1": -23.751, "v2": 36.202, "v3": -36.599, "v4": 22.413, "amplitude": 37.866, "phase_angle": 17.049, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 170.624, 134.057, 117.955 ], "x_axis": [ -0.886, -0.448, -0.118 ], "y_axis": [ -0.422, 0.886, -0.191 ], "z_axis": [ 0.190, -0.120, -0.974 ], "quaternion": [ 0.080, -0.225, 0.968, -0.080 ] } }, { "index": 2772, "index_chain": 94, "chain_name": "B", "nt_resnum": 97, "nt_name": "A", "nt_code": "A", "nt_id": "///B/97", "linked_nts": [ "///B/96", "///B/98" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -86.066, "beta": 51.638, "gamma": -177.129, "delta": 81.242, "epsilon": -111.534, "zeta": -73.909, "epsilon_zeta": -37.626, "bb_type": "--", "chi": 158.650, "glyco_bond": "anti", "C5prime_xyz": [ -1.689, 7.653, 2.708 ], "P_xyz": [ -2.441, 9.984, 1.770 ], "form": ".", "ssZp": 4.735, "Dp": 4.813, "splay_angle": 33.312, "splay_distance": 4.875, "splay_ratio": 0.289, "d22": null, "d64": null, "eta": -149.537, "theta": 169.018, "eta_prime": -177.079, "theta_prime": -166.234, "eta_base": 159.032, "theta_base": -102.155, "v0": 5.582, "v1": -27.372, "v2": 37.610, "v3": -35.362, "v4": 18.827, "amplitude": 38.238, "phase_angle": 10.396, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "1e", "suiteness": 0.048, "filter_rmsd": 0.043, "frame": { "rmsd": 0.009, "origin": [ 180.781, 137.682, 116.433 ], "x_axis": [ -0.105, -0.992, 0.069 ], "y_axis": [ -0.974, 0.089, -0.206 ], "z_axis": [ 0.198, -0.089, -0.976 ], "quaternion": [ 0.044, -0.667, 0.737, -0.100 ] } }, { "index": 2773, "index_chain": 95, "chain_name": "B", "nt_resnum": 98, "nt_name": "G", "nt_code": "G", "nt_id": "///B/98", "linked_nts": [ "///B/97", "///B/99" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -61.555, "beta": 170.231, "gamma": 46.467, "delta": 83.592, "epsilon": -133.038, "zeta": -72.983, "epsilon_zeta": -60.054, "bb_type": "BI", "chi": -179.953, "glyco_bond": "anti", "C5prime_xyz": [ -1.309, 8.332, 1.708 ], "P_xyz": [ 1.172, 8.280, 2.547 ], "form": "A", "ssZp": 4.720, "Dp": 4.720, "splay_angle": 25.608, "splay_distance": 4.001, "splay_ratio": 0.225, "d22": null, "d64": null, "eta": 156.561, "theta": -128.656, "eta_prime": 179.942, "theta_prime": -125.195, "eta_base": -104.388, "theta_base": -87.948, "v0": 4.787, "v1": -25.227, "v2": 35.019, "v3": -33.246, "v4": 17.974, "amplitude": 35.691, "phase_angle": 11.131, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.327, "filter_rmsd": 0.006, "frame": { "rmsd": 0.006, "origin": [ 180.976, 134.324, 112.905 ], "x_axis": [ -0.936, -0.353, -0.013 ], "y_axis": [ -0.353, 0.936, 0.012 ], "z_axis": [ 0.008, 0.016, -1.000 ], "quaternion": [ 0.005, -0.179, 0.984, 0.007 ] } }, { "index": 2774, "index_chain": 96, "chain_name": "B", "nt_resnum": 99, "nt_name": "A", "nt_code": "A", "nt_id": "///B/99", "linked_nts": [ "///B/98", "///B/100" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -51.324, "beta": 163.573, "gamma": 47.794, "delta": 79.337, "epsilon": -138.281, "zeta": -74.712, "epsilon_zeta": -63.569, "bb_type": "BI", "chi": -174.891, "glyco_bond": "anti", "C5prime_xyz": [ -1.665, 8.558, 1.377 ], "P_xyz": [ 0.827, 8.976, 2.043 ], "form": ".", "ssZp": 4.612, "Dp": 4.655, "splay_angle": 25.326, "splay_distance": 3.834, "splay_ratio": 0.219, "d22": null, "d64": null, "eta": 165.844, "theta": -137.825, "eta_prime": -174.062, "theta_prime": -133.823, "eta_base": -115.259, "theta_base": -79.465, "v0": 0.634, "v1": -23.614, "v2": 36.360, "v3": -37.012, "v4": 22.896, "amplitude": 38.161, "phase_angle": 17.675, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.724, "filter_rmsd": 0.039, "frame": { "rmsd": 0.005, "origin": [ 179.408, 132.690, 109.605 ], "x_axis": [ -0.925, 0.373, 0.071 ], "y_axis": [ 0.378, 0.923, 0.075 ], "z_axis": [ -0.037, 0.096, -0.995 ], "quaternion": [ -0.028, 0.191, 0.980, 0.044 ] } }, { "index": 2775, "index_chain": 97, "chain_name": "B", "nt_resnum": 100, "nt_name": "G", "nt_code": "G", "nt_id": "///B/100", "linked_nts": [ "///B/99", "///B/101" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -56.448, "beta": 162.583, "gamma": 51.252, "delta": 85.058, "epsilon": -141.050, "zeta": -72.834, "epsilon_zeta": -68.216, "bb_type": "BI", "chi": -168.435, "glyco_bond": "anti", "C5prime_xyz": [ -1.226, 8.574, 1.075 ], "P_xyz": [ 1.376, 8.597, 1.431 ], "form": "A", "ssZp": 4.532, "Dp": 4.638, "splay_angle": 20.912, "splay_distance": 3.354, "splay_ratio": 0.183, "d22": null, "d64": null, "eta": 165.757, "theta": -131.748, "eta_prime": -174.482, "theta_prime": -131.339, "eta_base": -101.796, "theta_base": -98.783, "v0": 4.496, "v1": -24.418, "v2": 33.930, "v3": -32.295, "v4": 17.580, "amplitude": 34.607, "phase_angle": 11.350, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.844, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 177.079, 133.957, 106.836 ], "x_axis": [ -0.265, 0.953, 0.149 ], "y_axis": [ 0.961, 0.274, -0.043 ], "z_axis": [ -0.082, 0.132, -0.988 ], "quaternion": [ -0.073, 0.602, 0.795, 0.028 ] } }, { "index": 2776, "index_chain": 98, "chain_name": "B", "nt_resnum": 101, "nt_name": "U", "nt_code": "U", "nt_id": "///B/101", "linked_nts": [ "///B/100", "///B/102" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -53.127, "beta": 163.976, "gamma": 48.332, "delta": 81.428, "epsilon": -146.430, "zeta": -106.036, "epsilon_zeta": -40.394, "bb_type": "BI", "chi": -158.920, "glyco_bond": "anti", "C5prime_xyz": [ -1.607, 8.785, 0.453 ], "P_xyz": [ 0.947, 9.318, 0.674 ], "form": ".", "ssZp": 4.319, "Dp": 4.553, "splay_angle": 43.727, "splay_distance": 6.708, "splay_ratio": 0.373, "d22": null, "d64": null, "eta": 166.790, "theta": -162.581, "eta_prime": -173.916, "theta_prime": -158.362, "eta_base": -121.705, "theta_base": -136.569, "v0": -1.452, "v1": -20.504, "v2": 33.455, "v3": -35.249, "v4": 23.141, "amplitude": 35.813, "phase_angle": 20.909, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.812, "filter_rmsd": 0.101, "frame": { "rmsd": 0.004, "origin": [ 175.534, 135.561, 104.327 ], "x_axis": [ 0.377, 0.919, 0.118 ], "y_axis": [ 0.909, -0.342, -0.237 ], "z_axis": [ -0.178, 0.196, -0.964 ], "quaternion": [ -0.132, 0.819, 0.558, -0.018 ] } }, { "index": 2777, "index_chain": 99, "chain_name": "B", "nt_resnum": 102, "nt_name": "A", "nt_code": "A", "nt_id": "///B/102", "linked_nts": [ "///B/101", "///B/103" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop", "alpha": -22.593, "beta": 152.727, "gamma": 38.423, "delta": 79.234, "epsilon": -121.131, "zeta": -63.251, "epsilon_zeta": -57.880, "bb_type": "--", "chi": -179.834, "glyco_bond": "anti", "C5prime_xyz": [ -1.590, 8.396, 1.655 ], "P_xyz": [ 0.924, 8.501, 2.351 ], "form": ".", "ssZp": 4.746, "Dp": 4.763, "splay_angle": 36.001, "splay_distance": 5.546, "splay_ratio": 0.311, "d22": null, "d64": null, "eta": -169.765, "theta": -112.568, "eta_prime": -166.239, "theta_prime": -106.625, "eta_base": -144.101, "theta_base": -55.788, "v0": 2.357, "v1": -25.194, "v2": 37.273, "v3": -36.951, "v4": 21.771, "amplitude": 38.624, "phase_angle": 15.201, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.037, "frame": { "rmsd": 0.004, "origin": [ 173.321, 136.418, 98.053 ], "x_axis": [ 0.672, 0.711, 0.208 ], "y_axis": [ 0.670, -0.703, 0.238 ], "z_axis": [ 0.315, -0.020, -0.949 ], "quaternion": [ 0.071, 0.912, 0.379, 0.144 ] } }, { "index": 2778, "index_chain": 100, "chain_name": "B", "nt_resnum": 103, "nt_name": "G", "nt_code": "G", "nt_id": "///B/103", "linked_nts": [ "///B/102", "///B/104" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop", "alpha": -59.428, "beta": 155.903, "gamma": 61.145, "delta": 79.792, "epsilon": 179.211, "zeta": -89.812, "epsilon_zeta": -90.977, "bb_type": "BI", "chi": -176.314, "glyco_bond": "anti", "C5prime_xyz": [ -1.739, 8.560, 1.431 ], "P_xyz": [ 0.816, 9.074, 1.519 ], "form": "A", "ssZp": 4.324, "Dp": 4.362, "splay_angle": 24.897, "splay_distance": 3.791, "splay_ratio": 0.220, "d22": null, "d64": null, "eta": 153.905, "theta": -148.385, "eta_prime": -168.317, "theta_prime": -150.629, "eta_base": -82.750, "theta_base": -131.385, "v0": 0.286, "v1": -23.123, "v2": 35.839, "v3": -36.721, "v4": 22.964, "amplitude": 37.728, "phase_angle": 18.205, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.511, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 178.217, 138.470, 96.450 ], "x_axis": [ 0.892, -0.291, 0.345 ], "y_axis": [ -0.274, -0.957, -0.098 ], "z_axis": [ 0.359, -0.007, -0.933 ], "quaternion": [ -0.023, 0.972, -0.145, 0.181 ] } }, { "index": 2779, "index_chain": 101, "chain_name": "B", "nt_resnum": 104, "nt_name": "G", "nt_code": "G", "nt_id": "///B/104", "linked_nts": [ "///B/103", "///B/105" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop", "alpha": -165.738, "beta": -129.470, "gamma": 133.039, "delta": 81.733, "epsilon": -124.827, "zeta": -95.174, "epsilon_zeta": -29.653, "bb_type": "--", "chi": -174.453, "glyco_bond": "anti", "C5prime_xyz": [ -1.787, 8.643, 1.350 ], "P_xyz": [ 0.761, 8.932, 0.832 ], "form": ".", "ssZp": 4.462, "Dp": 4.577, "splay_angle": 25.999, "splay_distance": 3.990, "splay_ratio": 0.229, "d22": null, "d64": null, "eta": 174.864, "theta": -135.523, "eta_prime": -175.526, "theta_prime": -136.662, "eta_base": -144.825, "theta_base": -76.848, "v0": -1.399, "v1": -20.460, "v2": 33.301, "v3": -35.057, "v4": 22.995, "amplitude": 35.630, "phase_angle": 20.829, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.005, "frame": { "rmsd": 0.005, "origin": [ 179.909, 140.569, 93.784 ], "x_axis": [ 0.639, -0.748, 0.177 ], "y_axis": [ -0.688, -0.659, -0.303 ], "z_axis": [ 0.343, 0.072, -0.936 ], "quaternion": [ -0.104, 0.899, -0.399, 0.145 ] } }, { "index": 2780, "index_chain": 102, "chain_name": "B", "nt_resnum": 105, "nt_name": "A", "nt_code": "A", "nt_id": "///B/105", "linked_nts": [ "///B/104", "///B/106" ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C3'-endo,non-pair-contact,junction-loop,phosphate", "alpha": -36.063, "beta": 141.587, "gamma": 41.050, "delta": 82.805, "epsilon": -117.232, "zeta": -96.812, "epsilon_zeta": -20.419, "bb_type": "--", "chi": -152.864, "glyco_bond": "anti", "C5prime_xyz": [ -1.014, 8.601, 0.149 ], "P_xyz": [ 1.562, 8.214, -0.096 ], "form": ".", "ssZp": 3.970, "Dp": 4.785, "splay_angle": 60.512, "splay_distance": 9.715, "splay_ratio": 0.505, "d22": null, "d64": null, "eta": 168.576, "theta": -151.255, "eta_prime": -173.021, "theta_prime": -135.134, "eta_base": -95.652, "theta_base": -141.027, "v0": 6.546, "v1": -27.227, "v2": 36.585, "v3": -33.817, "v4": 17.213, "amplitude": 37.013, "phase_angle": 8.713, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1L", "suiteness": 0.260, "filter_rmsd": 0.040, "frame": { "rmsd": 0.006, "origin": [ 181.484, 138.292, 90.910 ], "x_axis": [ -0.161, -0.944, -0.289 ], "y_axis": [ -0.846, 0.283, -0.452 ], "z_axis": [ 0.508, 0.172, -0.844 ], "quaternion": [ 0.263, -0.592, 0.756, -0.093 ] } }, { "index": 2781, "index_chain": 103, "chain_name": "B", "nt_resnum": 106, "nt_name": "C", "nt_code": "C", "nt_id": "///B/106", "linked_nts": [ "///B/105", "///B/107" ], "nt_type": "RNA", "dbn": ".", "summary": "turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate,splayed-apart", "alpha": -45.055, "beta": -130.619, "gamma": 29.569, "delta": 143.054, "epsilon": -143.134, "zeta": 96.590, "epsilon_zeta": 120.277, "bb_type": "--", "chi": -93.165, "glyco_bond": "anti", "C5prime_xyz": [ -2.034, 7.769, -2.450 ], "P_xyz": [ -0.369, 9.729, -2.021 ], "form": ".", "ssZp": 1.325, "Dp": 1.953, "splay_angle": 116.826, "splay_distance": 18.504, "splay_ratio": 0.852, "d22": null, "d64": null, "eta": -143.603, "theta": 70.131, "eta_prime": -150.038, "theta_prime": 54.375, "eta_base": -168.699, "theta_base": 74.688, "v0": -17.404, "v1": 30.366, "v2": -31.084, "v3": 21.886, "v4": -3.015, "amplitude": 31.960, "phase_angle": 166.555, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32p", "cluster": "1[", "suiteness": 0.079, "filter_rmsd": 0.064, "frame": { "rmsd": 0.004, "origin": [ 186.451, 140.868, 82.968 ], "x_axis": [ -0.135, -0.949, 0.287 ], "y_axis": [ -0.991, 0.128, -0.042 ], "z_axis": [ 0.003, -0.290, -0.957 ], "quaternion": [ -0.095, -0.651, 0.745, -0.111 ] } }, { "index": 2782, "index_chain": 104, "chain_name": "B", "nt_resnum": 107, "nt_name": "G", "nt_code": "G", "nt_id": "///B/107", "linked_nts": [ "///B/106", "///B/108" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,cap-acceptor,splayed-apart", "alpha": 0.223, "beta": -138.359, "gamma": -54.820, "delta": 82.139, "epsilon": 175.756, "zeta": -81.630, "epsilon_zeta": -102.614, "bb_type": "BI", "chi": -155.746, "glyco_bond": "anti", "C5prime_xyz": [ -1.246, 8.756, 0.291 ], "P_xyz": [ -1.127, 11.273, 1.088 ], "form": "A", "ssZp": 4.197, "Dp": 4.310, "splay_angle": 20.508, "splay_distance": 3.248, "splay_ratio": 0.180, "d22": null, "d64": null, "eta": -160.692, "theta": 165.015, "eta_prime": -159.398, "theta_prime": 178.736, "eta_base": -156.190, "theta_base": -145.439, "v0": 3.290, "v1": -24.765, "v2": 35.679, "v3": -34.709, "v4": 19.837, "amplitude": 36.703, "phase_angle": 13.564, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.007, "frame": { "rmsd": 0.007, "origin": [ 175.117, 155.095, 86.364 ], "x_axis": [ 0.701, 0.619, -0.354 ], "y_axis": [ 0.395, -0.750, -0.531 ], "z_axis": [ -0.594, 0.232, -0.770 ], "quaternion": [ -0.213, 0.897, 0.282, -0.264 ] } }, { "index": 2783, "index_chain": 105, "chain_name": "B", "nt_resnum": 108, "nt_name": "C", "nt_code": "C", "nt_id": "///B/108", "linked_nts": [ "///B/107", "///B/109" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": 178.530, "beta": -140.227, "gamma": 144.198, "delta": 80.536, "epsilon": -126.644, "zeta": -89.336, "epsilon_zeta": -37.308, "bb_type": "--", "chi": -175.702, "glyco_bond": "anti", "C5prime_xyz": [ -1.384, 8.607, 1.437 ], "P_xyz": [ 1.045, 9.182, 0.665 ], "form": "A", "ssZp": 4.562, "Dp": 4.640, "splay_angle": 22.165, "splay_distance": 3.526, "splay_ratio": 0.193, "d22": 4.200, "d64": 4.139, "eta": 165.984, "theta": -144.374, "eta_prime": 178.865, "theta_prime": -146.115, "eta_base": -145.127, "theta_base": -118.323, "v0": -0.040, "v1": -21.815, "v2": 34.182, "v3": -35.186, "v4": 22.167, "amplitude": 36.084, "phase_angle": 18.684, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.067, "frame": { "rmsd": 0.007, "origin": [ 172.966, 156.999, 84.849 ], "x_axis": [ 0.838, 0.157, -0.523 ], "y_axis": [ -0.043, -0.936, -0.349 ], "z_axis": [ -0.544, 0.315, -0.778 ], "quaternion": [ -0.176, 0.942, 0.030, -0.283 ] } }, { "index": 2784, "index_chain": 106, "chain_name": "B", "nt_resnum": 109, "nt_name": "C", "nt_code": "C", "nt_id": "///B/109", "linked_nts": [ "///B/108", "///B/110" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem", "alpha": -45.517, "beta": 154.570, "gamma": 44.323, "delta": 80.267, "epsilon": -130.548, "zeta": -94.814, "epsilon_zeta": -35.735, "bb_type": "--", "chi": -164.103, "glyco_bond": "anti", "C5prime_xyz": [ -1.605, 8.775, 0.734 ], "P_xyz": [ 0.959, 9.184, 0.971 ], "form": ".", "ssZp": 4.423, "Dp": 4.668, "splay_angle": 27.609, "splay_distance": 5.228, "splay_ratio": 0.258, "d22": null, "d64": null, "eta": 166.640, "theta": -127.243, "eta_prime": -178.709, "theta_prime": -141.245, "eta_base": -134.957, "theta_base": -145.719, "v0": -0.772, "v1": -22.004, "v2": 35.097, "v3": -36.579, "v4": 23.522, "amplitude": 37.300, "phase_angle": 19.791, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33p", "cluster": "1a", "suiteness": 0.401, "filter_rmsd": 0.059, "frame": { "rmsd": 0.006, "origin": [ 172.058, 159.204, 82.250 ], "x_axis": [ 0.705, -0.434, -0.561 ], "y_axis": [ -0.540, -0.841, -0.029 ], "z_axis": [ -0.459, 0.323, -0.828 ], "quaternion": [ -0.096, 0.918, -0.265, -0.278 ] } }, { "index": 2785, "index_chain": 107, "chain_name": "B", "nt_resnum": 110, "nt_name": "G", "nt_code": "G", "nt_id": "///B/110", "linked_nts": [ "///B/109", "///B/111" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem", "alpha": 78.817, "beta": -142.573, "gamma": -110.477, "delta": 85.057, "epsilon": -172.786, "zeta": -73.892, "epsilon_zeta": -98.894, "bb_type": "BI", "chi": -171.749, "glyco_bond": "anti", "C5prime_xyz": [ -1.280, 8.517, 1.262 ], "P_xyz": [ -0.912, 11.085, 0.922 ], "form": "A", "ssZp": 4.342, "Dp": 4.390, "splay_angle": 22.382, "splay_distance": 3.397, "splay_ratio": 0.195, "d22": null, "d64": null, "eta": -176.702, "theta": 174.522, "eta_prime": -176.052, "theta_prime": -166.823, "eta_base": -164.106, "theta_base": -117.576, "v0": 4.555, "v1": -24.314, "v2": 33.734, "v3": -32.083, "v4": 17.407, "amplitude": 34.393, "phase_angle": 11.234, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.010, "frame": { "rmsd": 0.010, "origin": [ 171.785, 163.577, 79.398 ], "x_axis": [ 0.686, -0.595, -0.420 ], "y_axis": [ -0.618, -0.780, 0.096 ], "z_axis": [ -0.385, 0.194, -0.903 ], "quaternion": [ -0.027, 0.918, -0.330, -0.219 ] } }, { "index": 2786, "index_chain": 108, "chain_name": "B", "nt_resnum": 111, "nt_name": "C", "nt_code": "C", "nt_id": "///B/111", "linked_nts": [ "///B/110", "///B/112" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem", "alpha": -155.563, "beta": -132.196, "gamma": 113.457, "delta": 81.508, "epsilon": 165.553, "zeta": 36.874, "epsilon_zeta": 128.679, "bb_type": "--", "chi": -154.129, "glyco_bond": "anti", "C5prime_xyz": [ -1.451, 8.873, 0.185 ], "P_xyz": [ 1.123, 8.788, -0.275 ], "form": ".", "ssZp": 3.954, "Dp": 4.048, "splay_angle": 29.798, "splay_distance": 5.220, "splay_ratio": 0.266, "d22": 4.922, "d64": 5.835, "eta": 157.050, "theta": -86.762, "eta_prime": -175.578, "theta_prime": -122.002, "eta_base": -120.418, "theta_base": -111.188, "v0": -2.552, "v1": -18.866, "v2": 31.809, "v3": -34.250, "v4": 23.261, "amplitude": 34.511, "phase_angle": 22.823, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "trig", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.061, "frame": { "rmsd": 0.008, "origin": [ 171.976, 164.006, 76.034 ], "x_axis": [ 0.054, -0.962, -0.267 ], "y_axis": [ -0.974, -0.110, 0.199 ], "z_axis": [ -0.220, 0.249, -0.943 ], "quaternion": [ -0.017, 0.726, -0.667, -0.168 ] } }, { "index": 2787, "index_chain": 109, "chain_name": "B", "nt_resnum": 112, "nt_name": "C", "nt_code": "C", "nt_id": "///B/112", "linked_nts": [ "///B/111", "///B/113" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix,stem,phosphate", "alpha": -176.556, "beta": 86.395, "gamma": 162.621, "delta": 84.701, "epsilon": -99.617, "zeta": -32.347, "epsilon_zeta": -67.270, "bb_type": "--", "chi": -170.704, "glyco_bond": "anti", "C5prime_xyz": [ -1.028, 8.474, 1.186 ], "P_xyz": [ -1.278, 10.413, -0.535 ], "form": ".", "ssZp": 4.459, "Dp": 4.755, "splay_angle": 20.104, "splay_distance": 3.607, "splay_ratio": 0.184, "d22": null, "d64": null, "eta": 164.925, "theta": -157.125, "eta_prime": 178.151, "theta_prime": -157.865, "eta_base": -147.410, "theta_base": -128.809, "v0": 6.134, "v1": -26.304, "v2": 35.398, "v3": -32.850, "v4": 16.893, "amplitude": 35.842, "phase_angle": 9.025, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.066, "frame": { "rmsd": 0.007, "origin": [ 172.441, 163.385, 70.872 ], "x_axis": [ -0.410, -0.891, -0.197 ], "y_axis": [ -0.889, 0.342, 0.304 ], "z_axis": [ -0.203, 0.299, -0.932 ], "quaternion": [ -0.002, -0.543, 0.819, 0.184 ] } }, { "index": 2788, "index_chain": 110, "chain_name": "B", "nt_resnum": 113, "nt_name": "A", "nt_code": "A", "nt_id": "///B/113", "linked_nts": [ "///B/112", "///B/114" ], "nt_type": "RNA", "dbn": ")", "summary": "anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,cap-acceptor", "alpha": -106.253, "beta": 76.808, "gamma": 162.356, "delta": 79.664, "epsilon": -113.832, "zeta": -31.352, "epsilon_zeta": -82.480, "bb_type": "--", "chi": -176.828, "glyco_bond": "anti", "C5prime_xyz": [ -0.800, 8.273, 1.513 ], "P_xyz": [ -1.069, 10.322, -0.097 ], "form": ".", "ssZp": 4.744, "Dp": 4.847, "splay_angle": 30.802, "splay_distance": 5.674, "splay_ratio": 0.292, "d22": null, "d64": null, "eta": 166.969, "theta": -159.111, "eta_prime": 178.315, "theta_prime": -144.728, "eta_base": -137.431, "theta_base": -124.924, "v0": 8.832, "v1": -30.933, "v2": 40.274, "v3": -36.215, "v4": 17.256, "amplitude": 40.519, "phase_angle": 6.310, "puckering": "C3'-endo", "sugar_class": "~C3'-endo", "bin": "33t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.045, "frame": { "rmsd": 0.018, "origin": [ 172.146, 161.616, 67.743 ], "x_axis": [ -0.717, -0.697, -0.013 ], "y_axis": [ -0.690, 0.706, 0.164 ], "z_axis": [ -0.105, 0.126, -0.986 ], "quaternion": [ -0.025, -0.376, 0.923, 0.079 ] } }, { "index": 2789, "index_chain": 111, "chain_name": "B", "nt_resnum": 114, "nt_name": "A", "nt_code": "A", "nt_id": "///B/114", "linked_nts": [ "///B/113", null ], "nt_type": "RNA", "dbn": ".", "summary": "anti,~C2'-endo,non-pair-contact,ss-non-loop,cap-donor", "alpha": -97.640, "beta": 111.482, "gamma": -176.223, "delta": 147.665, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -176.886, "glyco_bond": "anti", "C5prime_xyz": [ -2.218, 8.243, 1.800 ], "P_xyz": [ -1.509, 10.742, 1.428 ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": -21.073, "v1": 35.849, "v2": -36.074, "v3": 24.836, "v4": -2.582, "amplitude": 37.326, "phase_angle": 165.118, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "32t", "cluster": "!!", "suiteness": 0.000, "filter_rmsd": 0.038, "frame": { "rmsd": 0.004, "origin": [ 170.449, 157.715, 63.988 ], "x_axis": [ -0.954, -0.298, 0.013 ], "y_axis": [ -0.293, 0.944, 0.152 ], "z_axis": [ -0.058, 0.141, -0.988 ], "quaternion": [ -0.018, -0.150, 0.986, 0.074 ] } }, { "index": 2790, "index_chain": 1, "chain_name": "W", "nt_resnum": 501, "nt_name": "GNP", "nt_code": "g", "is_modified": true, "nt_id": "///W/501", "linked_nts": [ null, null ], "nt_type": "RNA", "dbn": ".", "is_broken": true, "summary": "modified,break,anti,~C2'-endo,non-stack,ss-non-loop", "alpha": null, "beta": null, "gamma": -4.798, "delta": 147.132, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -107.847, "glyco_bond": "anti", "C5prime_xyz": [ -1.868, 8.250, -1.727 ], "P_xyz": [ null, null, null ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": -14.959, "v1": 31.710, "v2": -35.495, "v3": 27.962, "v4": -8.392, "amplitude": 35.653, "phase_angle": 174.606, "puckering": "C2'-endo", "sugar_class": "~C2'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 229.974, 215.675, 154.586 ], "x_axis": [ 0.152, -0.907, -0.394 ], "y_axis": [ -0.733, 0.164, -0.660 ], "z_axis": [ 0.663, 0.389, -0.640 ], "quaternion": [ 0.411, -0.638, 0.643, -0.106 ] } }, { "index": 2791, "index_chain": 2, "chain_name": "W", "nt_resnum": 502, "nt_name": "GNP", "nt_code": "g", "is_modified": true, "nt_id": "///W/502", "linked_nts": [ null, null ], "nt_type": "RNA", "dbn": ".", "summary": "modified,anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop", "alpha": null, "beta": null, "gamma": 31.914, "delta": 84.767, "epsilon": null, "zeta": null, "epsilon_zeta": null, "bb_type": "--", "chi": -127.196, "glyco_bond": "anti", "C5prime_xyz": [ -2.093, 8.702, -1.473 ], "P_xyz": [ null, null, null ], "form": "-", "ssZp": null, "Dp": null, "splay_angle": null, "splay_distance": null, "splay_ratio": null, "d22": null, "d64": null, "eta": null, "theta": null, "eta_prime": null, "theta_prime": null, "eta_base": null, "theta_base": null, "v0": -12.704, "v1": -10.571, "v2": 28.082, "v3": -36.294, "v4": 31.039, "amplitude": 36.028, "phase_angle": 38.791, "puckering": "C4'-exo", "sugar_class": "~C3'-endo", "bin": "inc", "cluster": "__", "suiteness": 0.000, "filter_rmsd": 0.012, "frame": { "rmsd": 0.012, "origin": [ 196.714, 219.660, 123.819 ], "x_axis": [ 0.588, -0.431, -0.685 ], "y_axis": [ 0.714, -0.122, 0.690 ], "z_axis": [ -0.381, -0.894, 0.236 ], "quaternion": [ 0.652, 0.607, 0.117, -0.439 ] } } ], "num_hbonds": 7774, "hbonds": [ { "index": 1, "atom1_serNum": 11, "atom2_serNum": 24, "donAcc_type": "acceptable", "distance": 2.669, "atom1_id": "///A/3/O2'", "atom2_id": "///A/4/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2, "atom1_serNum": 16, "atom2_serNum": 57494, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///A/3/N3", "atom2_id": "///A/2924/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3, "atom1_serNum": 16, "atom2_serNum": 57512, "donAcc_type": "standard", "distance": 2.790, "atom1_id": "///A/3/N3", "atom2_id": "///A/2925/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4, "atom1_serNum": 18, "atom2_serNum": 57493, "donAcc_type": "standard", "distance": 2.988, "atom1_id": "///A/3/O4", "atom2_id": "///A/2924/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5, "atom1_serNum": 36, "atom2_serNum": 57472, "donAcc_type": "standard", "distance": 2.840, "atom1_id": "///A/4/N3", "atom2_id": "///A/2923/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 6, "atom1_serNum": 38, "atom2_serNum": 57471, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///A/4/O4", "atom2_id": "///A/2923/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 7, "atom1_serNum": 51, "atom2_serNum": 69, "donAcc_type": "acceptable", "distance": 2.925, "atom1_id": "///A/5/O2'", "atom2_id": "///A/6/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 8, "atom1_serNum": 58, "atom2_serNum": 57451, "donAcc_type": "standard", "distance": 3.007, "atom1_id": "///A/5/N6", "atom2_id": "///A/2922/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 9, "atom1_serNum": 59, "atom2_serNum": 57449, "donAcc_type": "standard", "distance": 2.805, "atom1_id": "///A/5/N1", "atom2_id": "///A/2922/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 10, "atom1_serNum": 71, "atom2_serNum": 66215, "donAcc_type": "standard", "distance": 2.989, "atom1_id": "///A/6/O3'", "atom2_id": "///G/133/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 11, "atom1_serNum": 80, "atom2_serNum": 57431, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///A/6/N6", "atom2_id": "///A/2921/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 12, "atom1_serNum": 81, "atom2_serNum": 57429, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///A/6/N1", "atom2_id": "///A/2921/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 13, "atom1_serNum": 86, "atom2_serNum": 66215, "donAcc_type": "standard", "distance": 3.153, "atom1_id": "///A/7/OP1", "atom2_id": "///G/133/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 14, "atom1_serNum": 95, "atom2_serNum": 114, "donAcc_type": "acceptable", "distance": 3.117, "atom1_id": "///A/7/O2'", "atom2_id": "///A/8/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 15, "atom1_serNum": 102, "atom2_serNum": 57411, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///A/7/O6", "atom2_id": "///A/2920/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 16, "atom1_serNum": 103, "atom2_serNum": 57409, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///A/7/N1", "atom2_id": "///A/2920/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 17, "atom1_serNum": 105, "atom2_serNum": 57408, "donAcc_type": "standard", "distance": 2.763, "atom1_id": "///A/7/N2", "atom2_id": "///A/2920/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 18, "atom1_serNum": 109, "atom2_serNum": 66114, "donAcc_type": "standard", "distance": 3.088, "atom1_id": "///A/8/OP1", "atom2_id": "///G/121/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 19, "atom1_serNum": 123, "atom2_serNum": 57390, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///A/8/N3", "atom2_id": "///A/2919/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 20, "atom1_serNum": 125, "atom2_serNum": 57389, "donAcc_type": "standard", "distance": 2.850, "atom1_id": "///A/8/O4", "atom2_id": "///A/2919/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 21, "atom1_serNum": 138, "atom2_serNum": 154, "donAcc_type": "acceptable", "distance": 2.803, "atom1_id": "///A/9/O2'", "atom2_id": "///A/10/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 22, "atom1_serNum": 142, "atom2_serNum": 51778, "donAcc_type": "standard", "distance": 2.702, "atom1_id": "///A/9/O2", "atom2_id": "///A/2658/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 23, "atom1_serNum": 143, "atom2_serNum": 51775, "donAcc_type": "standard", "distance": 3.092, "atom1_id": "///A/9/N3", "atom2_id": "///A/2658/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 24, "atom1_serNum": 180, "atom2_serNum": 196, "donAcc_type": "acceptable", "distance": 2.715, "atom1_id": "///A/11/O2'", "atom2_id": "///A/12/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 25, "atom1_serNum": 188, "atom2_serNum": 51742, "donAcc_type": "standard", "distance": 3.285, "atom1_id": "///A/11/N1", "atom2_id": "///A/2657/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 26, "atom1_serNum": 203, "atom2_serNum": 216, "donAcc_type": "acceptable", "distance": 2.483, "atom1_id": "///A/12/O2'", "atom2_id": "///A/13/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 27, "atom1_serNum": 225, "atom2_serNum": 273, "donAcc_type": "acceptable", "distance": 2.912, "atom1_id": "///A/13/O2'", "atom2_id": "///A/15/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 28, "atom1_serNum": 225, "atom2_serNum": 276, "donAcc_type": "acceptable", "distance": 3.020, "atom1_id": "///A/13/O2'", "atom2_id": "///A/15/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 29, "atom1_serNum": 232, "atom2_serNum": 12236, "donAcc_type": "standard", "distance": 3.542, "atom1_id": "///A/13/N6", "atom2_id": "///A/572/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 30, "atom1_serNum": 235, "atom2_serNum": 254, "donAcc_type": "standard", "distance": 3.547, "atom1_id": "///A/13/N3", "atom2_id": "///A/14/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 31, "atom1_serNum": 255, "atom2_serNum": 40815, "donAcc_type": "acceptable", "distance": 3.299, "atom1_id": "///A/14/N1", "atom2_id": "///A/2073/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 32, "atom1_serNum": 276, "atom2_serNum": 12229, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///A/15/O6", "atom2_id": "///A/571/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 33, "atom1_serNum": 277, "atom2_serNum": 12228, "donAcc_type": "standard", "distance": 3.139, "atom1_id": "///A/15/N1", "atom2_id": "///A/571/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 34, "atom1_serNum": 279, "atom2_serNum": 12228, "donAcc_type": "standard", "distance": 3.273, "atom1_id": "///A/15/N2", "atom2_id": "///A/571/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 35, "atom1_serNum": 299, "atom2_serNum": 12211, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///A/16/O6", "atom2_id": "///A/570/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 36, "atom1_serNum": 300, "atom2_serNum": 12209, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/16/N1", "atom2_id": "///A/570/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 37, "atom1_serNum": 302, "atom2_serNum": 12208, "donAcc_type": "standard", "distance": 2.820, "atom1_id": "///A/16/N2", "atom2_id": "///A/570/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 38, "atom1_serNum": 322, "atom2_serNum": 12191, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/17/O6", "atom2_id": "///A/569/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 39, "atom1_serNum": 323, "atom2_serNum": 12189, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///A/17/N1", "atom2_id": "///A/569/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 40, "atom1_serNum": 325, "atom2_serNum": 12188, "donAcc_type": "standard", "distance": 2.799, "atom1_id": "///A/17/N2", "atom2_id": "///A/569/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 41, "atom1_serNum": 325, "atom2_serNum": 12802, "donAcc_type": "standard", "distance": 3.675, "atom1_id": "///A/17/N2", "atom2_id": "///A/598/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 42, "atom1_serNum": 329, "atom2_serNum": 70044, "donAcc_type": "standard", "distance": 3.144, "atom1_id": "///A/18/OP1", "atom2_id": "///L/26/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 43, "atom1_serNum": 338, "atom2_serNum": 12795, "donAcc_type": "acceptable", "distance": 3.325, "atom1_id": "///A/18/O2'", "atom2_id": "///A/598/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 44, "atom1_serNum": 342, "atom2_serNum": 12171, "donAcc_type": "standard", "distance": 2.808, "atom1_id": "///A/18/O2", "atom2_id": "///A/568/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 45, "atom1_serNum": 343, "atom2_serNum": 12169, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///A/18/N3", "atom2_id": "///A/568/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 46, "atom1_serNum": 345, "atom2_serNum": 12168, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///A/18/N4", "atom2_id": "///A/568/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 47, "atom1_serNum": 349, "atom2_serNum": 70017, "donAcc_type": "standard", "distance": 3.132, "atom1_id": "///A/19/OP1", "atom2_id": "///L/23/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 48, "atom1_serNum": 365, "atom2_serNum": 12146, "donAcc_type": "standard", "distance": 3.062, "atom1_id": "///A/19/O6", "atom2_id": "///A/567/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 49, "atom1_serNum": 366, "atom2_serNum": 12145, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///A/19/N1", "atom2_id": "///A/567/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 50, "atom1_serNum": 385, "atom2_serNum": 12128, "donAcc_type": "standard", "distance": 2.811, "atom1_id": "///A/20/O2", "atom2_id": "///A/566/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 51, "atom1_serNum": 386, "atom2_serNum": 12126, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/20/N3", "atom2_id": "///A/566/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 52, "atom1_serNum": 388, "atom2_serNum": 12125, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///A/20/N4", "atom2_id": "///A/566/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 53, "atom1_serNum": 408, "atom2_serNum": 12105, "donAcc_type": "standard", "distance": 2.954, "atom1_id": "///A/21/N6", "atom2_id": "///A/565/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 54, "atom1_serNum": 409, "atom2_serNum": 12103, "donAcc_type": "standard", "distance": 2.813, "atom1_id": "///A/21/N1", "atom2_id": "///A/565/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 55, "atom1_serNum": 427, "atom2_serNum": 12085, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///A/22/O2", "atom2_id": "///A/564/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 56, "atom1_serNum": 428, "atom2_serNum": 12083, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///A/22/N3", "atom2_id": "///A/564/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 57, "atom1_serNum": 430, "atom2_serNum": 12082, "donAcc_type": "standard", "distance": 2.985, "atom1_id": "///A/22/N4", "atom2_id": "///A/564/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 58, "atom1_serNum": 434, "atom2_serNum": 11784, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///A/23/OP1", "atom2_id": "///A/550/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 59, "atom1_serNum": 450, "atom2_serNum": 12062, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///A/23/O6", "atom2_id": "///A/563/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 60, "atom1_serNum": 451, "atom2_serNum": 12060, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///A/23/N1", "atom2_id": "///A/563/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 61, "atom1_serNum": 453, "atom2_serNum": 12059, "donAcc_type": "standard", "distance": 2.788, "atom1_id": "///A/23/N2", "atom2_id": "///A/563/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 62, "atom1_serNum": 466, "atom2_serNum": 482, "donAcc_type": "acceptable", "distance": 2.958, "atom1_id": "///A/24/O2'", "atom2_id": "///A/25/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 63, "atom1_serNum": 473, "atom2_serNum": 12042, "donAcc_type": "standard", "distance": 2.973, "atom1_id": "///A/24/O6", "atom2_id": "///A/562/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 64, "atom1_serNum": 474, "atom2_serNum": 12040, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///A/24/N1", "atom2_id": "///A/562/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 65, "atom1_serNum": 476, "atom2_serNum": 12039, "donAcc_type": "standard", "distance": 2.718, "atom1_id": "///A/24/N2", "atom2_id": "///A/562/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 66, "atom1_serNum": 493, "atom2_serNum": 12020, "donAcc_type": "standard", "distance": 3.306, "atom1_id": "///A/25/O2", "atom2_id": "///A/561/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 67, "atom1_serNum": 509, "atom2_serNum": 525, "donAcc_type": "acceptable", "distance": 2.800, "atom1_id": "///A/26/O2'", "atom2_id": "///A/27/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 68, "atom1_serNum": 517, "atom2_serNum": 11961, "donAcc_type": "standard", "distance": 3.451, "atom1_id": "///A/26/N1", "atom2_id": "///A/559/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 69, "atom1_serNum": 519, "atom2_serNum": 11995, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///A/26/N2", "atom2_id": "///A/560/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 70, "atom1_serNum": 520, "atom2_serNum": 11998, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///A/26/N3", "atom2_id": "///A/560/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 71, "atom1_serNum": 532, "atom2_serNum": 11956, "donAcc_type": "acceptable", "distance": 2.454, "atom1_id": "///A/27/O2'", "atom2_id": "///A/558/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 72, "atom1_serNum": 542, "atom2_serNum": 11961, "donAcc_type": "standard", "distance": 3.363, "atom1_id": "///A/27/N2", "atom2_id": "///A/559/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 73, "atom1_serNum": 542, "atom2_serNum": 11973, "donAcc_type": "standard", "distance": 3.392, "atom1_id": "///A/27/N2", "atom2_id": "///A/559/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 74, "atom1_serNum": 555, "atom2_serNum": 13400, "donAcc_type": "acceptable", "distance": 3.352, "atom1_id": "///A/28/O2'", "atom2_id": "///A/626/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 75, "atom1_serNum": 559, "atom2_serNum": 11956, "donAcc_type": "standard", "distance": 3.955, "atom1_id": "///A/28/N7", "atom2_id": "///A/558/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 76, "atom1_serNum": 568, "atom2_serNum": 69889, "donAcc_type": "standard", "distance": 3.593, "atom1_id": "///A/29/OP1", "atom2_id": "///L/5/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 77, "atom1_serNum": 573, "atom2_serNum": 69929, "donAcc_type": "standard", "distance": 3.528, "atom1_id": "///A/29/O4'", "atom2_id": "///L/11/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 78, "atom1_serNum": 581, "atom2_serNum": 25289, "donAcc_type": "acceptable", "distance": 3.458, "atom1_id": "///A/29/O2", "atom2_id": "///A/1255/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 79, "atom1_serNum": 582, "atom2_serNum": 11930, "donAcc_type": "standard", "distance": 3.168, "atom1_id": "///A/29/N3", "atom2_id": "///A/557/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 80, "atom1_serNum": 584, "atom2_serNum": 11931, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///A/29/O4", "atom2_id": "///A/557/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 81, "atom1_serNum": 597, "atom2_serNum": 25267, "donAcc_type": "acceptable", "distance": 3.187, "atom1_id": "///A/30/O2'", "atom2_id": "///A/1254/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 82, "atom1_serNum": 597, "atom2_serNum": 25277, "donAcc_type": "acceptable", "distance": 3.263, "atom1_id": "///A/30/O2'", "atom2_id": "///A/1254/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 83, "atom1_serNum": 604, "atom2_serNum": 11913, "donAcc_type": "standard", "distance": 2.970, "atom1_id": "///A/30/O6", "atom2_id": "///A/556/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 84, "atom1_serNum": 605, "atom2_serNum": 11911, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///A/30/N1", "atom2_id": "///A/556/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 85, "atom1_serNum": 607, "atom2_serNum": 11910, "donAcc_type": "standard", "distance": 2.769, "atom1_id": "///A/30/N2", "atom2_id": "///A/556/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 86, "atom1_serNum": 620, "atom2_serNum": 25782, "donAcc_type": "acceptable", "distance": 2.795, "atom1_id": "///A/31/O2'", "atom2_id": "///A/1278/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 87, "atom1_serNum": 624, "atom2_serNum": 11151, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///A/31/O2", "atom2_id": "///A/521/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 88, "atom1_serNum": 625, "atom2_serNum": 11149, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///A/31/N3", "atom2_id": "///A/521/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 89, "atom1_serNum": 627, "atom2_serNum": 11148, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///A/31/N4", "atom2_id": "///A/521/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 90, "atom1_serNum": 644, "atom2_serNum": 11128, "donAcc_type": "standard", "distance": 2.847, "atom1_id": "///A/32/O2", "atom2_id": "///A/520/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 91, "atom1_serNum": 645, "atom2_serNum": 11126, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///A/32/N3", "atom2_id": "///A/520/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 92, "atom1_serNum": 647, "atom2_serNum": 10546, "donAcc_type": "standard", "distance": 3.539, "atom1_id": "///A/32/N4", "atom2_id": "///A/494/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 93, "atom1_serNum": 647, "atom2_serNum": 11125, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///A/32/N4", "atom2_id": "///A/520/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 94, "atom1_serNum": 660, "atom2_serNum": 10541, "donAcc_type": "acceptable", "distance": 2.994, "atom1_id": "///A/33/O2'", "atom2_id": "///A/493/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 95, "atom1_serNum": 664, "atom2_serNum": 10561, "donAcc_type": "standard", "distance": 2.795, "atom1_id": "///A/33/O2", "atom2_id": "///A/494/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 96, "atom1_serNum": 665, "atom2_serNum": 10558, "donAcc_type": "standard", "distance": 3.082, "atom1_id": "///A/33/N3", "atom2_id": "///A/494/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 97, "atom1_serNum": 667, "atom2_serNum": 10531, "donAcc_type": "acceptable", "distance": 2.919, "atom1_id": "///A/33/O4", "atom2_id": "///A/493/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 98, "atom1_serNum": 680, "atom2_serNum": 684, "donAcc_type": "acceptable", "distance": 3.046, "atom1_id": "///A/34/O2'", "atom2_id": "///A/34/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 99, "atom1_serNum": 680, "atom2_serNum": 693, "donAcc_type": "acceptable", "distance": 3.096, "atom1_id": "///A/34/O2'", "atom2_id": "///A/35/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 100, "atom1_serNum": 680, "atom2_serNum": 696, "donAcc_type": "acceptable", "distance": 3.098, "atom1_id": "///A/34/O2'", "atom2_id": "///A/35/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 101, "atom1_serNum": 680, "atom2_serNum": 10716, "donAcc_type": "acceptable", "distance": 3.621, "atom1_id": "///A/34/O2'", "atom2_id": "///A/501/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 102, "atom1_serNum": 700, "atom2_serNum": 10628, "donAcc_type": "acceptable", "distance": 3.174, "atom1_id": "///A/35/O2'", "atom2_id": "///A/497/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 103, "atom1_serNum": 700, "atom2_serNum": 10702, "donAcc_type": "acceptable", "distance": 2.308, "atom1_id": "///A/35/O2'", "atom2_id": "///A/501/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 104, "atom1_serNum": 707, "atom2_serNum": 10518, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///A/35/O6", "atom2_id": "///A/492/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 105, "atom1_serNum": 708, "atom2_serNum": 10516, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///A/35/N1", "atom2_id": "///A/492/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 106, "atom1_serNum": 710, "atom2_serNum": 10515, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///A/35/N2", "atom2_id": "///A/492/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 107, "atom1_serNum": 710, "atom2_serNum": 10604, "donAcc_type": "standard", "distance": 3.670, "atom1_id": "///A/35/N2", "atom2_id": "///A/496/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 108, "atom1_serNum": 710, "atom2_serNum": 10629, "donAcc_type": "standard", "distance": 3.637, "atom1_id": "///A/35/N2", "atom2_id": "///A/497/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 109, "atom1_serNum": 723, "atom2_serNum": 10618, "donAcc_type": "acceptable", "distance": 2.944, "atom1_id": "///A/36/O2'", "atom2_id": "///A/497/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 110, "atom1_serNum": 730, "atom2_serNum": 10498, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///A/36/O6", "atom2_id": "///A/491/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 111, "atom1_serNum": 731, "atom2_serNum": 10496, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///A/36/N1", "atom2_id": "///A/491/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 112, "atom1_serNum": 733, "atom2_serNum": 10495, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///A/36/N2", "atom2_id": "///A/491/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 113, "atom1_serNum": 734, "atom2_serNum": 10618, "donAcc_type": "acceptable", "distance": 3.058, "atom1_id": "///A/36/N3", "atom2_id": "///A/497/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 114, "atom1_serNum": 750, "atom2_serNum": 10456, "donAcc_type": "standard", "distance": 2.807, "atom1_id": "///A/37/O2", "atom2_id": "///A/489/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 115, "atom1_serNum": 751, "atom2_serNum": 10454, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///A/37/N3", "atom2_id": "///A/489/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 116, "atom1_serNum": 753, "atom2_serNum": 10453, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///A/37/N4", "atom2_id": "///A/489/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 117, "atom1_serNum": 766, "atom2_serNum": 63571, "donAcc_type": "acceptable", "distance": 2.679, "atom1_id": "///A/38/O2'", "atom2_id": "///E/48/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 118, "atom1_serNum": 773, "atom2_serNum": 10433, "donAcc_type": "standard", "distance": 2.974, "atom1_id": "///A/38/N6", "atom2_id": "///A/488/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 119, "atom1_serNum": 774, "atom2_serNum": 10431, "donAcc_type": "standard", "distance": 2.861, "atom1_id": "///A/38/N1", "atom2_id": "///A/488/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 120, "atom1_serNum": 776, "atom2_serNum": 63571, "donAcc_type": "acceptable", "distance": 2.817, "atom1_id": "///A/38/N3", "atom2_id": "///E/48/OG1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 121, "atom1_serNum": 788, "atom2_serNum": 14119, "donAcc_type": "acceptable", "distance": 3.180, "atom1_id": "///A/39/O2'", "atom2_id": "///A/659/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 122, "atom1_serNum": 792, "atom2_serNum": 10413, "donAcc_type": "standard", "distance": 2.813, "atom1_id": "///A/39/O2", "atom2_id": "///A/487/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 123, "atom1_serNum": 792, "atom2_serNum": 14118, "donAcc_type": "standard", "distance": 3.947, "atom1_id": "///A/39/O2", "atom2_id": "///A/659/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 124, "atom1_serNum": 793, "atom2_serNum": 10411, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///A/39/N3", "atom2_id": "///A/487/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 125, "atom1_serNum": 795, "atom2_serNum": 10410, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///A/39/N4", "atom2_id": "///A/487/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 126, "atom1_serNum": 813, "atom2_serNum": 10389, "donAcc_type": "standard", "distance": 2.845, "atom1_id": "///A/40/N3", "atom2_id": "///A/486/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 127, "atom1_serNum": 815, "atom2_serNum": 10388, "donAcc_type": "standard", "distance": 2.969, "atom1_id": "///A/40/O4", "atom2_id": "///A/486/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 128, "atom1_serNum": 835, "atom2_serNum": 10368, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///A/41/N6", "atom2_id": "///A/485/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 129, "atom1_serNum": 836, "atom2_serNum": 10366, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///A/41/N1", "atom2_id": "///A/485/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 130, "atom1_serNum": 857, "atom2_serNum": 10348, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///A/42/O6", "atom2_id": "///A/484/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 131, "atom1_serNum": 858, "atom2_serNum": 10346, "donAcc_type": "standard", "distance": 2.847, "atom1_id": "///A/42/N1", "atom2_id": "///A/484/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 132, "atom1_serNum": 860, "atom2_serNum": 10345, "donAcc_type": "standard", "distance": 2.696, "atom1_id": "///A/42/N2", "atom2_id": "///A/484/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 133, "atom1_serNum": 880, "atom2_serNum": 10328, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///A/43/O6", "atom2_id": "///A/483/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 134, "atom1_serNum": 881, "atom2_serNum": 10326, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///A/43/N1", "atom2_id": "///A/483/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 135, "atom1_serNum": 883, "atom2_serNum": 10325, "donAcc_type": "standard", "distance": 2.788, "atom1_id": "///A/43/N2", "atom2_id": "///A/483/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 136, "atom1_serNum": 903, "atom2_serNum": 10288, "donAcc_type": "standard", "distance": 3.008, "atom1_id": "///A/44/N6", "atom2_id": "///A/481/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 137, "atom1_serNum": 904, "atom2_serNum": 10286, "donAcc_type": "standard", "distance": 2.825, "atom1_id": "///A/44/N1", "atom2_id": "///A/481/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 138, "atom1_serNum": 918, "atom2_serNum": 3888, "donAcc_type": "acceptable", "distance": 3.179, "atom1_id": "///A/45/O2'", "atom2_id": "///A/183/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 139, "atom1_serNum": 925, "atom2_serNum": 10268, "donAcc_type": "standard", "distance": 2.994, "atom1_id": "///A/45/O6", "atom2_id": "///A/480/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 140, "atom1_serNum": 926, "atom2_serNum": 10266, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///A/45/N1", "atom2_id": "///A/480/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 141, "atom1_serNum": 928, "atom2_serNum": 3889, "donAcc_type": "standard", "distance": 2.858, "atom1_id": "///A/45/N2", "atom2_id": "///A/183/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 142, "atom1_serNum": 928, "atom2_serNum": 10265, "donAcc_type": "standard", "distance": 2.780, "atom1_id": "///A/45/N2", "atom2_id": "///A/480/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 143, "atom1_serNum": 929, "atom2_serNum": 3888, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///A/45/N3", "atom2_id": "///A/183/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 144, "atom1_serNum": 933, "atom2_serNum": 4627, "donAcc_type": "questionable", "distance": 2.701, "atom1_id": "///A/46/OP2", "atom2_id": "///A/218/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 145, "atom1_serNum": 941, "atom2_serNum": 957, "donAcc_type": "acceptable", "distance": 3.161, "atom1_id": "///A/46/O2'", "atom2_id": "///A/47/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 146, "atom1_serNum": 945, "atom2_serNum": 3848, "donAcc_type": "standard", "distance": 2.785, "atom1_id": "///A/46/O2", "atom2_id": "///A/181/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 147, "atom1_serNum": 946, "atom2_serNum": 3846, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///A/46/N3", "atom2_id": "///A/181/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 148, "atom1_serNum": 948, "atom2_serNum": 3845, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///A/46/N4", "atom2_id": "///A/181/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 149, "atom1_serNum": 961, "atom2_serNum": 1069, "donAcc_type": "acceptable", "distance": 3.306, "atom1_id": "///A/47/O2'", "atom2_id": "///A/52/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 150, "atom1_serNum": 965, "atom2_serNum": 3825, "donAcc_type": "standard", "distance": 2.682, "atom1_id": "///A/47/O2", "atom2_id": "///A/180/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 151, "atom1_serNum": 966, "atom2_serNum": 3823, "donAcc_type": "standard", "distance": 2.845, "atom1_id": "///A/47/N3", "atom2_id": "///A/180/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 152, "atom1_serNum": 968, "atom2_serNum": 3822, "donAcc_type": "standard", "distance": 2.940, "atom1_id": "///A/47/N4", "atom2_id": "///A/180/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 153, "atom1_serNum": 981, "atom2_serNum": 2474, "donAcc_type": "acceptable", "distance": 3.133, "atom1_id": "///A/48/O2'", "atom2_id": "///A/117/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 154, "atom1_serNum": 989, "atom2_serNum": 3785, "donAcc_type": "standard", "distance": 3.067, "atom1_id": "///A/48/N1", "atom2_id": "///A/179/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 155, "atom1_serNum": 991, "atom2_serNum": 3785, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///A/48/N2", "atom2_id": "///A/179/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 156, "atom1_serNum": 1008, "atom2_serNum": 2515, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///A/49/N7", "atom2_id": "///A/119/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 157, "atom1_serNum": 1011, "atom2_serNum": 2517, "donAcc_type": "standard", "distance": 3.246, "atom1_id": "///A/49/N6", "atom2_id": "///A/119/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 158, "atom1_serNum": 1026, "atom2_serNum": 1037, "donAcc_type": "acceptable", "distance": 2.910, "atom1_id": "///A/50/O2'", "atom2_id": "///A/51/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 159, "atom1_serNum": 1046, "atom2_serNum": 1061, "donAcc_type": "acceptable", "distance": 2.507, "atom1_id": "///A/51/O2'", "atom2_id": "///A/52/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 160, "atom1_serNum": 1046, "atom2_serNum": 2495, "donAcc_type": "acceptable", "distance": 2.895, "atom1_id": "///A/51/O2'", "atom2_id": "///A/118/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 161, "atom1_serNum": 1046, "atom2_serNum": 2496, "donAcc_type": "acceptable", "distance": 2.519, "atom1_id": "///A/51/O2'", "atom2_id": "///A/118/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 162, "atom1_serNum": 1054, "atom2_serNum": 2514, "donAcc_type": "standard", "distance": 3.111, "atom1_id": "///A/51/N1", "atom2_id": "///A/119/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 163, "atom1_serNum": 1056, "atom2_serNum": 2470, "donAcc_type": "standard", "distance": 2.717, "atom1_id": "///A/51/N2", "atom2_id": "///A/117/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 164, "atom1_serNum": 1057, "atom2_serNum": 2473, "donAcc_type": "standard", "distance": 2.841, "atom1_id": "///A/51/N3", "atom2_id": "///A/117/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 165, "atom1_serNum": 1061, "atom2_serNum": 2451, "donAcc_type": "standard", "distance": 3.018, "atom1_id": "///A/52/OP2", "atom2_id": "///A/116/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 166, "atom1_serNum": 1061, "atom2_serNum": 2495, "donAcc_type": "standard", "distance": 2.855, "atom1_id": "///A/52/OP2", "atom2_id": "///A/118/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 167, "atom1_serNum": 1069, "atom2_serNum": 1084, "donAcc_type": "acceptable", "distance": 2.914, "atom1_id": "///A/52/O2'", "atom2_id": "///A/53/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 168, "atom1_serNum": 1073, "atom2_serNum": 2495, "donAcc_type": "standard", "distance": 3.138, "atom1_id": "///A/52/N7", "atom2_id": "///A/118/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 169, "atom1_serNum": 1076, "atom2_serNum": 2492, "donAcc_type": "standard", "distance": 3.842, "atom1_id": "///A/52/N6", "atom2_id": "///A/118/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 170, "atom1_serNum": 1079, "atom2_serNum": 3825, "donAcc_type": "standard", "distance": 3.727, "atom1_id": "///A/52/N3", "atom2_id": "///A/180/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 171, "atom1_serNum": 1095, "atom2_serNum": 2453, "donAcc_type": "standard", "distance": 2.994, "atom1_id": "///A/53/N7", "atom2_id": "///A/116/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 172, "atom1_serNum": 1098, "atom2_serNum": 2443, "donAcc_type": "acceptable", "distance": 3.218, "atom1_id": "///A/53/N6", "atom2_id": "///A/116/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 173, "atom1_serNum": 1098, "atom2_serNum": 2454, "donAcc_type": "standard", "distance": 2.844, "atom1_id": "///A/53/N6", "atom2_id": "///A/116/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 174, "atom1_serNum": 1113, "atom2_serNum": 75810, "donAcc_type": "acceptable", "distance": 3.278, "atom1_id": "///A/54/O2'", "atom2_id": "///U/35/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 175, "atom1_serNum": 1120, "atom2_serNum": 2430, "donAcc_type": "standard", "distance": 2.988, "atom1_id": "///A/54/O6", "atom2_id": "///A/115/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 176, "atom1_serNum": 1121, "atom2_serNum": 2428, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///A/54/N1", "atom2_id": "///A/115/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 177, "atom1_serNum": 1123, "atom2_serNum": 2427, "donAcc_type": "standard", "distance": 2.746, "atom1_id": "///A/54/N2", "atom2_id": "///A/115/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 178, "atom1_serNum": 1123, "atom2_serNum": 2652, "donAcc_type": "standard", "distance": 3.984, "atom1_id": "///A/54/N2", "atom2_id": "///A/125/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 179, "atom1_serNum": 1136, "atom2_serNum": 2674, "donAcc_type": "acceptable", "distance": 2.752, "atom1_id": "///A/55/O2'", "atom2_id": "///A/126/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 180, "atom1_serNum": 1143, "atom2_serNum": 2410, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///A/55/O6", "atom2_id": "///A/114/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 181, "atom1_serNum": 1144, "atom2_serNum": 2408, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///A/55/N1", "atom2_id": "///A/114/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 182, "atom1_serNum": 1146, "atom2_serNum": 2407, "donAcc_type": "standard", "distance": 2.722, "atom1_id": "///A/55/N2", "atom2_id": "///A/114/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 183, "atom1_serNum": 1146, "atom2_serNum": 2676, "donAcc_type": "standard", "distance": 3.289, "atom1_id": "///A/55/N2", "atom2_id": "///A/126/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 184, "atom1_serNum": 1166, "atom2_serNum": 2390, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///A/56/N6", "atom2_id": "///A/113/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 185, "atom1_serNum": 1167, "atom2_serNum": 2388, "donAcc_type": "standard", "distance": 2.850, "atom1_id": "///A/56/N1", "atom2_id": "///A/113/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 186, "atom1_serNum": 1179, "atom2_serNum": 72948, "donAcc_type": "standard", "distance": 2.377, "atom1_id": "///A/57/O3'", "atom2_id": "///O/75/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 187, "atom1_serNum": 1185, "atom2_serNum": 1471, "donAcc_type": "standard", "distance": 2.824, "atom1_id": "///A/57/O2", "atom2_id": "///A/70/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 188, "atom1_serNum": 1186, "atom2_serNum": 1469, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/57/N3", "atom2_id": "///A/70/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 189, "atom1_serNum": 1188, "atom2_serNum": 1468, "donAcc_type": "standard", "distance": 2.870, "atom1_id": "///A/57/N4", "atom2_id": "///A/70/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 190, "atom1_serNum": 1192, "atom2_serNum": 72937, "donAcc_type": "acceptable", "distance": 3.230, "atom1_id": "///A/58/OP1", "atom2_id": "///O/74/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 191, "atom1_serNum": 1192, "atom2_serNum": 72938, "donAcc_type": "standard", "distance": 3.280, "atom1_id": "///A/58/OP1", "atom2_id": "///O/75/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 192, "atom1_serNum": 1201, "atom2_serNum": 1215, "donAcc_type": "acceptable", "distance": 2.288, "atom1_id": "///A/58/O2'", "atom2_id": "///A/59/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 193, "atom1_serNum": 1201, "atom2_serNum": 1217, "donAcc_type": "acceptable", "distance": 2.768, "atom1_id": "///A/58/O2'", "atom2_id": "///A/59/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 194, "atom1_serNum": 1201, "atom2_serNum": 1534, "donAcc_type": "acceptable", "distance": 2.894, "atom1_id": "///A/58/O2'", "atom2_id": "///A/73/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 195, "atom1_serNum": 1208, "atom2_serNum": 1448, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///A/58/O6", "atom2_id": "///A/69/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 196, "atom1_serNum": 1209, "atom2_serNum": 1446, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///A/58/N1", "atom2_id": "///A/69/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 197, "atom1_serNum": 1211, "atom2_serNum": 1445, "donAcc_type": "standard", "distance": 2.767, "atom1_id": "///A/58/N2", "atom2_id": "///A/69/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 198, "atom1_serNum": 1211, "atom2_serNum": 1536, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///A/58/N2", "atom2_id": "///A/73/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 199, "atom1_serNum": 1224, "atom2_serNum": 1540, "donAcc_type": "acceptable", "distance": 2.136, "atom1_id": "///A/59/O2'", "atom2_id": "///A/74/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 200, "atom1_serNum": 1231, "atom2_serNum": 1428, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///A/59/O6", "atom2_id": "///A/68/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 201, "atom1_serNum": 1232, "atom2_serNum": 1426, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///A/59/N1", "atom2_id": "///A/68/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 202, "atom1_serNum": 1234, "atom2_serNum": 1425, "donAcc_type": "standard", "distance": 2.754, "atom1_id": "///A/59/N2", "atom2_id": "///A/68/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 203, "atom1_serNum": 1247, "atom2_serNum": 1284, "donAcc_type": "acceptable", "distance": 2.606, "atom1_id": "///A/60/O2'", "atom2_id": "///A/62/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 204, "atom1_serNum": 1254, "atom2_serNum": 1386, "donAcc_type": "standard", "distance": 3.345, "atom1_id": "///A/60/O6", "atom2_id": "///A/66/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 205, "atom1_serNum": 1255, "atom2_serNum": 1855, "donAcc_type": "standard", "distance": 2.779, "atom1_id": "///A/60/N1", "atom2_id": "///A/88/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 206, "atom1_serNum": 1257, "atom2_serNum": 1852, "donAcc_type": "standard", "distance": 2.814, "atom1_id": "///A/60/N2", "atom2_id": "///A/88/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 207, "atom1_serNum": 1277, "atom2_serNum": 1963, "donAcc_type": "standard", "distance": 3.127, "atom1_id": "///A/61/N6", "atom2_id": "///A/93/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 208, "atom1_serNum": 1278, "atom2_serNum": 1962, "donAcc_type": "questionable", "distance": 2.876, "atom1_id": "///A/61/N1", "atom2_id": "///A/93/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 209, "atom1_serNum": 1296, "atom2_serNum": 1945, "donAcc_type": "standard", "distance": 2.697, "atom1_id": "///A/62/O2", "atom2_id": "///A/92/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 210, "atom1_serNum": 1297, "atom2_serNum": 1943, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///A/62/N3", "atom2_id": "///A/92/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 211, "atom1_serNum": 1299, "atom2_serNum": 1942, "donAcc_type": "standard", "distance": 3.014, "atom1_id": "///A/62/N4", "atom2_id": "///A/92/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 212, "atom1_serNum": 1312, "atom2_serNum": 1331, "donAcc_type": "acceptable", "distance": 3.262, "atom1_id": "///A/63/O2'", "atom2_id": "///A/64/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 213, "atom1_serNum": 1342, "atom2_serNum": 1899, "donAcc_type": "standard", "distance": 2.619, "atom1_id": "///A/64/N6", "atom2_id": "///A/90/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 214, "atom1_serNum": 1357, "atom2_serNum": 10752, "donAcc_type": "acceptable", "distance": 3.153, "atom1_id": "///A/65/O2'", "atom2_id": "///A/503/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 215, "atom1_serNum": 1357, "atom2_serNum": 10753, "donAcc_type": "acceptable", "distance": 3.040, "atom1_id": "///A/65/O2'", "atom2_id": "///A/503/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 216, "atom1_serNum": 1364, "atom2_serNum": 1878, "donAcc_type": "standard", "distance": 2.940, "atom1_id": "///A/65/N6", "atom2_id": "///A/89/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 217, "atom1_serNum": 1365, "atom2_serNum": 1876, "donAcc_type": "standard", "distance": 2.840, "atom1_id": "///A/65/N1", "atom2_id": "///A/89/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 218, "atom1_serNum": 1367, "atom2_serNum": 10755, "donAcc_type": "standard", "distance": 2.780, "atom1_id": "///A/65/N3", "atom2_id": "///A/503/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 219, "atom1_serNum": 1383, "atom2_serNum": 1858, "donAcc_type": "standard", "distance": 2.779, "atom1_id": "///A/66/O2", "atom2_id": "///A/88/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 220, "atom1_serNum": 1384, "atom2_serNum": 1856, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/66/N3", "atom2_id": "///A/88/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 221, "atom1_serNum": 1386, "atom2_serNum": 1855, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///A/66/N4", "atom2_id": "///A/88/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 222, "atom1_serNum": 1406, "atom2_serNum": 1555, "donAcc_type": "standard", "distance": 2.997, "atom1_id": "///A/67/N6", "atom2_id": "///A/74/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 223, "atom1_serNum": 1407, "atom2_serNum": 1553, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/67/N1", "atom2_id": "///A/74/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 224, "atom1_serNum": 1445, "atom2_serNum": 1526, "donAcc_type": "acceptable", "distance": 2.877, "atom1_id": "///A/69/O2", "atom2_id": "///A/73/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 225, "atom1_serNum": 1452, "atom2_serNum": 2348, "donAcc_type": "standard", "distance": 3.111, "atom1_id": "///A/70/OP1", "atom2_id": "///A/111/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 226, "atom1_serNum": 1461, "atom2_serNum": 2363, "donAcc_type": "acceptable", "distance": 3.068, "atom1_id": "///A/70/O2'", "atom2_id": "///A/112/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 227, "atom1_serNum": 1471, "atom2_serNum": 1492, "donAcc_type": "standard", "distance": 3.610, "atom1_id": "///A/70/N2", "atom2_id": "///A/71/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 228, "atom1_serNum": 1475, "atom2_serNum": 2343, "donAcc_type": "acceptable", "distance": 2.477, "atom1_id": "///A/71/OP1", "atom2_id": "///A/111/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 229, "atom1_serNum": 1488, "atom2_serNum": 72624, "donAcc_type": "standard", "distance": 3.809, "atom1_id": "///A/71/N7", "atom2_id": "///O/33/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 230, "atom1_serNum": 1513, "atom2_serNum": 2321, "donAcc_type": "acceptable", "distance": 3.479, "atom1_id": "///A/72/O4", "atom2_id": "///A/110/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 231, "atom1_serNum": 1518, "atom2_serNum": 74532, "donAcc_type": "standard", "distance": 3.161, "atom1_id": "///A/73/OP2", "atom2_id": "///R/47/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 232, "atom1_serNum": 1539, "atom2_serNum": 74532, "donAcc_type": "standard", "distance": 3.050, "atom1_id": "///A/74/OP1", "atom2_id": "///R/47/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 233, "atom1_serNum": 1566, "atom2_serNum": 74541, "donAcc_type": "standard", "distance": 2.558, "atom1_id": "///A/75/O3'", "atom2_id": "///R/48/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 234, "atom1_serNum": 1578, "atom2_serNum": 2329, "donAcc_type": "standard", "distance": 3.835, "atom1_id": "///A/75/N2", "atom2_id": "///A/110/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 235, "atom1_serNum": 1582, "atom2_serNum": 74541, "donAcc_type": "standard", "distance": 3.000, "atom1_id": "///A/76/OP1", "atom2_id": "///R/48/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 236, "atom1_serNum": 1589, "atom2_serNum": 74567, "donAcc_type": "standard", "distance": 3.250, "atom1_id": "///A/76/O3'", "atom2_id": "///R/52/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 237, "atom1_serNum": 1591, "atom2_serNum": 74589, "donAcc_type": "acceptable", "distance": 3.202, "atom1_id": "///A/76/O2'", "atom2_id": "///R/55/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 238, "atom1_serNum": 1595, "atom2_serNum": 2308, "donAcc_type": "standard", "distance": 2.726, "atom1_id": "///A/76/O2", "atom2_id": "///A/109/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 239, "atom1_serNum": 1596, "atom2_serNum": 2306, "donAcc_type": "standard", "distance": 2.858, "atom1_id": "///A/76/N3", "atom2_id": "///A/109/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 240, "atom1_serNum": 1598, "atom2_serNum": 2305, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///A/76/N4", "atom2_id": "///A/109/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 241, "atom1_serNum": 1616, "atom2_serNum": 2284, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///A/77/N3", "atom2_id": "///A/108/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 242, "atom1_serNum": 1618, "atom2_serNum": 2283, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///A/77/O4", "atom2_id": "///A/108/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 243, "atom1_serNum": 1635, "atom2_serNum": 2261, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///A/78/O2", "atom2_id": "///A/107/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 244, "atom1_serNum": 1635, "atom2_serNum": 2263, "donAcc_type": "standard", "distance": 3.137, "atom1_id": "///A/78/O2", "atom2_id": "///A/107/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 245, "atom1_serNum": 1636, "atom2_serNum": 2260, "donAcc_type": "standard", "distance": 2.861, "atom1_id": "///A/78/N3", "atom2_id": "///A/107/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 246, "atom1_serNum": 1651, "atom2_serNum": 8346, "donAcc_type": "acceptable", "distance": 2.968, "atom1_id": "///A/79/O2'", "atom2_id": "///A/390/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 247, "atom1_serNum": 1651, "atom2_serNum": 8356, "donAcc_type": "acceptable", "distance": 3.132, "atom1_id": "///A/79/O2'", "atom2_id": "///A/390/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 248, "atom1_serNum": 1655, "atom2_serNum": 2240, "donAcc_type": "standard", "distance": 2.684, "atom1_id": "///A/79/O2", "atom2_id": "///A/106/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 249, "atom1_serNum": 1656, "atom2_serNum": 2238, "donAcc_type": "standard", "distance": 2.857, "atom1_id": "///A/79/N3", "atom2_id": "///A/106/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 250, "atom1_serNum": 1658, "atom2_serNum": 2237, "donAcc_type": "standard", "distance": 2.963, "atom1_id": "///A/79/N4", "atom2_id": "///A/106/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 251, "atom1_serNum": 1671, "atom2_serNum": 7208, "donAcc_type": "acceptable", "distance": 3.055, "atom1_id": "///A/80/O2'", "atom2_id": "///A/337/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 252, "atom1_serNum": 1678, "atom2_serNum": 2217, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///A/80/O6", "atom2_id": "///A/105/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 253, "atom1_serNum": 1679, "atom2_serNum": 2215, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///A/80/N1", "atom2_id": "///A/105/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 254, "atom1_serNum": 1681, "atom2_serNum": 2214, "donAcc_type": "standard", "distance": 2.699, "atom1_id": "///A/80/N2", "atom2_id": "///A/105/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 255, "atom1_serNum": 1694, "atom2_serNum": 7223, "donAcc_type": "acceptable", "distance": 3.105, "atom1_id": "///A/81/O2'", "atom2_id": "///A/338/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 256, "atom1_serNum": 1701, "atom2_serNum": 2197, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///A/81/O6", "atom2_id": "///A/104/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 257, "atom1_serNum": 1702, "atom2_serNum": 2195, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///A/81/N1", "atom2_id": "///A/104/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 258, "atom1_serNum": 1704, "atom2_serNum": 2194, "donAcc_type": "standard", "distance": 2.745, "atom1_id": "///A/81/N2", "atom2_id": "///A/104/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 259, "atom1_serNum": 1725, "atom2_serNum": 2140, "donAcc_type": "standard", "distance": 3.253, "atom1_id": "///A/82/N1", "atom2_id": "///A/102/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 260, "atom1_serNum": 1727, "atom2_serNum": 2177, "donAcc_type": "standard", "distance": 2.286, "atom1_id": "///A/82/N2", "atom2_id": "///A/103/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 261, "atom1_serNum": 1731, "atom2_serNum": 73686, "donAcc_type": "standard", "distance": 2.845, "atom1_id": "///A/83/OP1", "atom2_id": "///P/90/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 262, "atom1_serNum": 1740, "atom2_serNum": 2135, "donAcc_type": "acceptable", "distance": 3.204, "atom1_id": "///A/83/O2'", "atom2_id": "///A/101/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 263, "atom1_serNum": 1748, "atom2_serNum": 2140, "donAcc_type": "standard", "distance": 3.154, "atom1_id": "///A/83/N1", "atom2_id": "///A/102/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 264, "atom1_serNum": 1750, "atom2_serNum": 2140, "donAcc_type": "standard", "distance": 2.235, "atom1_id": "///A/83/N2", "atom2_id": "///A/102/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 265, "atom1_serNum": 1750, "atom2_serNum": 2152, "donAcc_type": "standard", "distance": 3.097, "atom1_id": "///A/83/N2", "atom2_id": "///A/102/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 266, "atom1_serNum": 1755, "atom2_serNum": 73108, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/84/OP2", "atom2_id": "///P/4/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 267, "atom1_serNum": 1763, "atom2_serNum": 2092, "donAcc_type": "acceptable", "distance": 3.464, "atom1_id": "///A/84/O2'", "atom2_id": "///A/99/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 268, "atom1_serNum": 1767, "atom2_serNum": 2135, "donAcc_type": "standard", "distance": 2.730, "atom1_id": "///A/84/N7", "atom2_id": "///A/101/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 269, "atom1_serNum": 1770, "atom2_serNum": 2125, "donAcc_type": "acceptable", "distance": 2.717, "atom1_id": "///A/84/N6", "atom2_id": "///A/101/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 270, "atom1_serNum": 1770, "atom2_serNum": 2136, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///A/84/N6", "atom2_id": "///A/101/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 271, "atom1_serNum": 1771, "atom2_serNum": 2065, "donAcc_type": "acceptable", "distance": 2.661, "atom1_id": "///A/84/N1", "atom2_id": "///A/98/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 272, "atom1_serNum": 1776, "atom2_serNum": 73109, "donAcc_type": "standard", "distance": 3.639, "atom1_id": "///A/85/OP1", "atom2_id": "///P/5/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 273, "atom1_serNum": 1785, "atom2_serNum": 2156, "donAcc_type": "acceptable", "distance": 2.999, "atom1_id": "///A/85/O2'", "atom2_id": "///A/102/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 274, "atom1_serNum": 1792, "atom2_serNum": 2052, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///A/85/O6", "atom2_id": "///A/97/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 275, "atom1_serNum": 1793, "atom2_serNum": 2050, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///A/85/N1", "atom2_id": "///A/97/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 276, "atom1_serNum": 1795, "atom2_serNum": 2049, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///A/85/N2", "atom2_id": "///A/97/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 277, "atom1_serNum": 1795, "atom2_serNum": 2158, "donAcc_type": "standard", "distance": 3.852, "atom1_id": "///A/85/N2", "atom2_id": "///A/102/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 278, "atom1_serNum": 1806, "atom2_serNum": 2170, "donAcc_type": "acceptable", "distance": 3.149, "atom1_id": "///A/86/O3'", "atom2_id": "///A/103/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 279, "atom1_serNum": 1812, "atom2_serNum": 2032, "donAcc_type": "standard", "distance": 2.802, "atom1_id": "///A/86/O2", "atom2_id": "///A/96/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 280, "atom1_serNum": 1813, "atom2_serNum": 2030, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///A/86/N3", "atom2_id": "///A/96/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 281, "atom1_serNum": 1815, "atom2_serNum": 2029, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///A/86/N4", "atom2_id": "///A/96/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 282, "atom1_serNum": 1833, "atom2_serNum": 2008, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///A/87/N3", "atom2_id": "///A/95/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 283, "atom1_serNum": 1835, "atom2_serNum": 2007, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///A/87/O4", "atom2_id": "///A/95/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 284, "atom1_serNum": 1862, "atom2_serNum": 1904, "donAcc_type": "questionable", "distance": 2.921, "atom1_id": "///A/89/OP1", "atom2_id": "///A/91/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 285, "atom1_serNum": 1863, "atom2_serNum": 1891, "donAcc_type": "acceptable", "distance": 2.628, "atom1_id": "///A/89/OP2", "atom2_id": "///A/90/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 286, "atom1_serNum": 1935, "atom2_serNum": 1954, "donAcc_type": "acceptable", "distance": 2.863, "atom1_id": "///A/92/O2'", "atom2_id": "///A/93/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 287, "atom1_serNum": 1958, "atom2_serNum": 1971, "donAcc_type": "acceptable", "distance": 2.699, "atom1_id": "///A/93/O2'", "atom2_id": "///A/94/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 288, "atom1_serNum": 1958, "atom2_serNum": 1974, "donAcc_type": "acceptable", "distance": 2.860, "atom1_id": "///A/93/O2'", "atom2_id": "///A/94/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 289, "atom1_serNum": 2000, "atom2_serNum": 74471, "donAcc_type": "acceptable", "distance": 3.701, "atom1_id": "///A/95/O2'", "atom2_id": "///R/41/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 290, "atom1_serNum": 2065, "atom2_serNum": 2125, "donAcc_type": "acceptable", "distance": 3.610, "atom1_id": "///A/98/O2'", "atom2_id": "///A/101/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 291, "atom1_serNum": 2092, "atom2_serNum": 73108, "donAcc_type": "standard", "distance": 3.558, "atom1_id": "///A/99/O4", "atom2_id": "///P/4/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 292, "atom1_serNum": 2125, "atom2_serNum": 2144, "donAcc_type": "acceptable", "distance": 3.386, "atom1_id": "///A/101/O2'", "atom2_id": "///A/102/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 293, "atom1_serNum": 2132, "atom2_serNum": 73677, "donAcc_type": "standard", "distance": 3.486, "atom1_id": "///A/101/O6", "atom2_id": "///P/89/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 294, "atom1_serNum": 2210, "atom2_serNum": 7199, "donAcc_type": "acceptable", "distance": 3.415, "atom1_id": "///A/105/O2'", "atom2_id": "///A/337/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 295, "atom1_serNum": 2226, "atom2_serNum": 7197, "donAcc_type": "questionable", "distance": 3.094, "atom1_id": "///A/106/O4'", "atom2_id": "///A/337/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 296, "atom1_serNum": 2228, "atom2_serNum": 7181, "donAcc_type": "acceptable", "distance": 3.265, "atom1_id": "///A/106/O3'", "atom2_id": "///A/336/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 297, "atom1_serNum": 2240, "atom2_serNum": 8354, "donAcc_type": "standard", "distance": 3.480, "atom1_id": "///A/106/N2", "atom2_id": "///A/390/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 298, "atom1_serNum": 2244, "atom2_serNum": 7181, "donAcc_type": "acceptable", "distance": 3.232, "atom1_id": "///A/107/OP1", "atom2_id": "///A/336/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 299, "atom1_serNum": 2253, "atom2_serNum": 8378, "donAcc_type": "acceptable", "distance": 3.448, "atom1_id": "///A/107/O2'", "atom2_id": "///A/391/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 300, "atom1_serNum": 2319, "atom2_serNum": 74610, "donAcc_type": "standard", "distance": 3.316, "atom1_id": "///A/110/O3'", "atom2_id": "///R/58/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 301, "atom1_serNum": 2334, "atom2_serNum": 74610, "donAcc_type": "standard", "distance": 3.198, "atom1_id": "///A/111/OP1", "atom2_id": "///R/58/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 302, "atom1_serNum": 2334, "atom2_serNum": 74613, "donAcc_type": "standard", "distance": 2.364, "atom1_id": "///A/111/OP1", "atom2_id": "///R/58/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 303, "atom1_serNum": 2403, "atom2_serNum": 2666, "donAcc_type": "acceptable", "distance": 3.027, "atom1_id": "///A/114/O2'", "atom2_id": "///A/126/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 304, "atom1_serNum": 2414, "atom2_serNum": 2695, "donAcc_type": "standard", "distance": 3.606, "atom1_id": "///A/115/OP1", "atom2_id": "///A/127/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 305, "atom1_serNum": 2423, "atom2_serNum": 2654, "donAcc_type": "acceptable", "distance": 2.924, "atom1_id": "///A/115/O2'", "atom2_id": "///A/125/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 306, "atom1_serNum": 2434, "atom2_serNum": 2607, "donAcc_type": "standard", "distance": 3.446, "atom1_id": "///A/116/OP1", "atom2_id": "///A/123/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 307, "atom1_serNum": 2435, "atom2_serNum": 2488, "donAcc_type": "acceptable", "distance": 2.365, "atom1_id": "///A/116/OP2", "atom2_id": "///A/118/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 308, "atom1_serNum": 2510, "atom2_serNum": 2514, "donAcc_type": "acceptable", "distance": 2.632, "atom1_id": "///A/119/O2'", "atom2_id": "///A/119/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 309, "atom1_serNum": 2537, "atom2_serNum": 2735, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///A/120/O6", "atom2_id": "///A/129/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 310, "atom1_serNum": 2538, "atom2_serNum": 2733, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///A/120/N1", "atom2_id": "///A/129/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 311, "atom1_serNum": 2540, "atom2_serNum": 2732, "donAcc_type": "standard", "distance": 2.817, "atom1_id": "///A/120/N2", "atom2_id": "///A/129/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 312, "atom1_serNum": 2544, "atom2_serNum": 3176, "donAcc_type": "acceptable", "distance": 3.548, "atom1_id": "///A/121/OP1", "atom2_id": "///A/150/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 313, "atom1_serNum": 2560, "atom2_serNum": 2715, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///A/121/O6", "atom2_id": "///A/128/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 314, "atom1_serNum": 2561, "atom2_serNum": 2713, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///A/121/N1", "atom2_id": "///A/128/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 315, "atom1_serNum": 2563, "atom2_serNum": 2712, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///A/121/N2", "atom2_id": "///A/128/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 316, "atom1_serNum": 2583, "atom2_serNum": 2695, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///A/122/O6", "atom2_id": "///A/127/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 317, "atom1_serNum": 2584, "atom2_serNum": 2693, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///A/122/N1", "atom2_id": "///A/127/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 318, "atom1_serNum": 2586, "atom2_serNum": 2692, "donAcc_type": "standard", "distance": 2.746, "atom1_id": "///A/122/N2", "atom2_id": "///A/127/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 319, "atom1_serNum": 2590, "atom2_serNum": 28743, "donAcc_type": "acceptable", "distance": 2.693, "atom1_id": "///A/123/OP1", "atom2_id": "///A/1415/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 320, "atom1_serNum": 2609, "atom2_serNum": 2644, "donAcc_type": "acceptable", "distance": 3.922, "atom1_id": "///A/123/N2", "atom2_id": "///A/125/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 321, "atom1_serNum": 2613, "atom2_serNum": 75644, "donAcc_type": "standard", "distance": 2.457, "atom1_id": "///A/124/OP1", "atom2_id": "///U/14/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 322, "atom1_serNum": 2614, "atom2_serNum": 75684, "donAcc_type": "standard", "distance": 3.223, "atom1_id": "///A/124/OP2", "atom2_id": "///U/19/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 323, "atom1_serNum": 2615, "atom2_serNum": 75644, "donAcc_type": "standard", "distance": 3.367, "atom1_id": "///A/124/O5'", "atom2_id": "///U/14/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 324, "atom1_serNum": 2632, "atom2_serNum": 75635, "donAcc_type": "acceptable", "distance": 3.051, "atom1_id": "///A/124/N3", "atom2_id": "///U/13/OG", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 325, "atom1_serNum": 2636, "atom2_serNum": 75677, "donAcc_type": "standard", "distance": 2.964, "atom1_id": "///A/125/OP2", "atom2_id": "///U/19/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 326, "atom1_serNum": 2644, "atom2_serNum": 2662, "donAcc_type": "acceptable", "distance": 2.799, "atom1_id": "///A/125/O2'", "atom2_id": "///A/126/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 327, "atom1_serNum": 2719, "atom2_serNum": 28144, "donAcc_type": "standard", "distance": 3.818, "atom1_id": "///A/129/OP1", "atom2_id": "///A/1387/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 328, "atom1_serNum": 2726, "atom2_serNum": 28157, "donAcc_type": "acceptable", "distance": 3.412, "atom1_id": "///A/129/O3'", "atom2_id": "///A/1388/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 329, "atom1_serNum": 2739, "atom2_serNum": 28157, "donAcc_type": "acceptable", "distance": 3.587, "atom1_id": "///A/130/OP1", "atom2_id": "///A/1388/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 330, "atom1_serNum": 2755, "atom2_serNum": 3163, "donAcc_type": "standard", "distance": 2.996, "atom1_id": "///A/130/N6", "atom2_id": "///A/149/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 331, "atom1_serNum": 2756, "atom2_serNum": 3161, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///A/130/N1", "atom2_id": "///A/149/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 332, "atom1_serNum": 2774, "atom2_serNum": 3143, "donAcc_type": "standard", "distance": 2.726, "atom1_id": "///A/131/O2", "atom2_id": "///A/148/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 333, "atom1_serNum": 2775, "atom2_serNum": 3141, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/131/N3", "atom2_id": "///A/148/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 334, "atom1_serNum": 2777, "atom2_serNum": 3140, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///A/131/N4", "atom2_id": "///A/148/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 335, "atom1_serNum": 2794, "atom2_serNum": 3120, "donAcc_type": "standard", "distance": 2.766, "atom1_id": "///A/132/O2", "atom2_id": "///A/147/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 336, "atom1_serNum": 2795, "atom2_serNum": 3118, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/132/N3", "atom2_id": "///A/147/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 337, "atom1_serNum": 2797, "atom2_serNum": 3117, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///A/132/N4", "atom2_id": "///A/147/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 338, "atom1_serNum": 2817, "atom2_serNum": 3097, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///A/133/N6", "atom2_id": "///A/146/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 339, "atom1_serNum": 2818, "atom2_serNum": 3095, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///A/133/N1", "atom2_id": "///A/146/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 340, "atom1_serNum": 2836, "atom2_serNum": 3077, "donAcc_type": "standard", "distance": 2.732, "atom1_id": "///A/134/O2", "atom2_id": "///A/145/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 341, "atom1_serNum": 2837, "atom2_serNum": 3075, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///A/134/N3", "atom2_id": "///A/145/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 342, "atom1_serNum": 2839, "atom2_serNum": 3074, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///A/134/N4", "atom2_id": "///A/145/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 343, "atom1_serNum": 2857, "atom2_serNum": 3053, "donAcc_type": "standard", "distance": 2.772, "atom1_id": "///A/135/N3", "atom2_id": "///A/144/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 344, "atom1_serNum": 2859, "atom2_serNum": 3052, "donAcc_type": "standard", "distance": 3.014, "atom1_id": "///A/135/O4", "atom2_id": "///A/144/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 345, "atom1_serNum": 2876, "atom2_serNum": 3032, "donAcc_type": "standard", "distance": 2.721, "atom1_id": "///A/136/O2", "atom2_id": "///A/143/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 346, "atom1_serNum": 2877, "atom2_serNum": 3030, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///A/136/N3", "atom2_id": "///A/143/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 347, "atom1_serNum": 2879, "atom2_serNum": 3029, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///A/136/N4", "atom2_id": "///A/143/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 348, "atom1_serNum": 2902, "atom2_serNum": 3006, "donAcc_type": "standard", "distance": 2.242, "atom1_id": "///A/137/N2", "atom2_id": "///A/142/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 349, "atom1_serNum": 2915, "atom2_serNum": 2961, "donAcc_type": "acceptable", "distance": 3.161, "atom1_id": "///A/138/O2'", "atom2_id": "///A/140/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 350, "atom1_serNum": 2919, "atom2_serNum": 2971, "donAcc_type": "questionable", "distance": 3.136, "atom1_id": "///A/138/O2", "atom2_id": "///A/141/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 351, "atom1_serNum": 2935, "atom2_serNum": 29455, "donAcc_type": "acceptable", "distance": 3.246, "atom1_id": "///A/139/O2'", "atom2_id": "///A/1449/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 352, "atom1_serNum": 2942, "atom2_serNum": 33565, "donAcc_type": "acceptable", "distance": 3.007, "atom1_id": "///A/139/N6", "atom2_id": "///A/1640/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 353, "atom1_serNum": 2943, "atom2_serNum": 33552, "donAcc_type": "standard", "distance": 3.760, "atom1_id": "///A/139/N1", "atom2_id": "///A/1639/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 354, "atom1_serNum": 2957, "atom2_serNum": 29422, "donAcc_type": "acceptable", "distance": 2.809, "atom1_id": "///A/140/O2'", "atom2_id": "///A/1447/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 355, "atom1_serNum": 2964, "atom2_serNum": 33565, "donAcc_type": "acceptable", "distance": 2.777, "atom1_id": "///A/140/N6", "atom2_id": "///A/1640/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 356, "atom1_serNum": 2967, "atom2_serNum": 29422, "donAcc_type": "acceptable", "distance": 3.197, "atom1_id": "///A/140/N3", "atom2_id": "///A/1447/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 357, "atom1_serNum": 2979, "atom2_serNum": 29402, "donAcc_type": "acceptable", "distance": 3.325, "atom1_id": "///A/141/O2'", "atom2_id": "///A/1446/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 358, "atom1_serNum": 2983, "atom2_serNum": 33588, "donAcc_type": "acceptable", "distance": 3.630, "atom1_id": "///A/141/O2", "atom2_id": "///A/1641/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 359, "atom1_serNum": 2999, "atom2_serNum": 33588, "donAcc_type": "acceptable", "distance": 3.665, "atom1_id": "///A/142/O2'", "atom2_id": "///A/1641/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 360, "atom1_serNum": 3022, "atom2_serNum": 72652, "donAcc_type": "acceptable", "distance": 3.080, "atom1_id": "///A/143/O2'", "atom2_id": "///O/37/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 361, "atom1_serNum": 3045, "atom2_serNum": 3060, "donAcc_type": "acceptable", "distance": 2.867, "atom1_id": "///A/144/O2'", "atom2_id": "///A/145/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 362, "atom1_serNum": 3222, "atom2_serNum": 3758, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///A/152/O2", "atom2_id": "///A/177/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 363, "atom1_serNum": 3223, "atom2_serNum": 3756, "donAcc_type": "standard", "distance": 2.970, "atom1_id": "///A/152/N3", "atom2_id": "///A/177/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 364, "atom1_serNum": 3223, "atom2_serNum": 3779, "donAcc_type": "questionable", "distance": 3.001, "atom1_id": "///A/152/N3", "atom2_id": "///A/178/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 365, "atom1_serNum": 3225, "atom2_serNum": 3755, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///A/152/N4", "atom2_id": "///A/177/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 366, "atom1_serNum": 3242, "atom2_serNum": 3713, "donAcc_type": "standard", "distance": 2.806, "atom1_id": "///A/153/O2", "atom2_id": "///A/175/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 367, "atom1_serNum": 3243, "atom2_serNum": 3711, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///A/153/N3", "atom2_id": "///A/175/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 368, "atom1_serNum": 3243, "atom2_serNum": 3756, "donAcc_type": "standard", "distance": 2.964, "atom1_id": "///A/153/N3", "atom2_id": "///A/177/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 369, "atom1_serNum": 3245, "atom2_serNum": 3710, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///A/153/N4", "atom2_id": "///A/175/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 370, "atom1_serNum": 3265, "atom2_serNum": 3690, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///A/154/N6", "atom2_id": "///A/174/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 371, "atom1_serNum": 3266, "atom2_serNum": 3688, "donAcc_type": "standard", "distance": 2.822, "atom1_id": "///A/154/N1", "atom2_id": "///A/174/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 372, "atom1_serNum": 3285, "atom2_serNum": 3669, "donAcc_type": "standard", "distance": 2.857, "atom1_id": "///A/155/N3", "atom2_id": "///A/173/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 373, "atom1_serNum": 3287, "atom2_serNum": 3668, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///A/155/O4", "atom2_id": "///A/173/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 374, "atom1_serNum": 3307, "atom2_serNum": 3648, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///A/156/N6", "atom2_id": "///A/172/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 375, "atom1_serNum": 3308, "atom2_serNum": 3646, "donAcc_type": "standard", "distance": 2.811, "atom1_id": "///A/156/N1", "atom2_id": "///A/172/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 376, "atom1_serNum": 3327, "atom2_serNum": 3627, "donAcc_type": "standard", "distance": 2.721, "atom1_id": "///A/157/N3", "atom2_id": "///A/171/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 377, "atom1_serNum": 3329, "atom2_serNum": 3626, "donAcc_type": "standard", "distance": 3.057, "atom1_id": "///A/157/O4", "atom2_id": "///A/171/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 378, "atom1_serNum": 3346, "atom2_serNum": 3606, "donAcc_type": "standard", "distance": 2.764, "atom1_id": "///A/158/O2", "atom2_id": "///A/170/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 379, "atom1_serNum": 3347, "atom2_serNum": 3604, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///A/158/N3", "atom2_id": "///A/170/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 380, "atom1_serNum": 3349, "atom2_serNum": 3603, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///A/158/N4", "atom2_id": "///A/170/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 381, "atom1_serNum": 3366, "atom2_serNum": 3583, "donAcc_type": "standard", "distance": 2.346, "atom1_id": "///A/159/O2", "atom2_id": "///A/169/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 382, "atom1_serNum": 3367, "atom2_serNum": 3581, "donAcc_type": "questionable", "distance": 2.440, "atom1_id": "///A/159/N3", "atom2_id": "///A/169/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 383, "atom1_serNum": 3369, "atom2_serNum": 3580, "donAcc_type": "questionable", "distance": 2.240, "atom1_id": "///A/159/O4", "atom2_id": "///A/169/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 384, "atom1_serNum": 3382, "atom2_serNum": 3558, "donAcc_type": "acceptable", "distance": 2.276, "atom1_id": "///A/160/O2'", "atom2_id": "///A/168/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 385, "atom1_serNum": 3390, "atom2_serNum": 3524, "donAcc_type": "standard", "distance": 3.251, "atom1_id": "///A/160/N1", "atom2_id": "///A/167/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 386, "atom1_serNum": 3392, "atom2_serNum": 3524, "donAcc_type": "standard", "distance": 3.035, "atom1_id": "///A/160/N2", "atom2_id": "///A/167/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 387, "atom1_serNum": 3392, "atom2_serNum": 3543, "donAcc_type": "standard", "distance": 3.057, "atom1_id": "///A/160/N2", "atom2_id": "///A/168/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 388, "atom1_serNum": 3392, "atom2_serNum": 3555, "donAcc_type": "standard", "distance": 2.839, "atom1_id": "///A/160/N2", "atom2_id": "///A/168/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 389, "atom1_serNum": 3393, "atom2_serNum": 3558, "donAcc_type": "standard", "distance": 3.204, "atom1_id": "///A/160/N3", "atom2_id": "///A/168/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 390, "atom1_serNum": 3396, "atom2_serNum": 3480, "donAcc_type": "questionable", "distance": 3.331, "atom1_id": "///A/161/OP1", "atom2_id": "///A/165/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 391, "atom1_serNum": 3397, "atom2_serNum": 3516, "donAcc_type": "standard", "distance": 3.496, "atom1_id": "///A/161/OP2", "atom2_id": "///A/166/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 392, "atom1_serNum": 3397, "atom2_serNum": 3538, "donAcc_type": "questionable", "distance": 2.829, "atom1_id": "///A/161/OP2", "atom2_id": "///A/167/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 393, "atom1_serNum": 3409, "atom2_serNum": 3536, "donAcc_type": "standard", "distance": 2.789, "atom1_id": "///A/161/N7", "atom2_id": "///A/167/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 394, "atom1_serNum": 3412, "atom2_serNum": 3535, "donAcc_type": "standard", "distance": 2.954, "atom1_id": "///A/161/N6", "atom2_id": "///A/167/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 395, "atom1_serNum": 3415, "atom2_serNum": 44320, "donAcc_type": "acceptable", "distance": 2.676, "atom1_id": "///A/161/N3", "atom2_id": "///A/2237/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 396, "atom1_serNum": 3418, "atom2_serNum": 3461, "donAcc_type": "questionable", "distance": 3.294, "atom1_id": "///A/162/OP1", "atom2_id": "///A/164/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 397, "atom1_serNum": 3419, "atom2_serNum": 3449, "donAcc_type": "acceptable", "distance": 2.401, "atom1_id": "///A/162/OP2", "atom2_id": "///A/163/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 398, "atom1_serNum": 3427, "atom2_serNum": 44304, "donAcc_type": "acceptable", "distance": 3.018, "atom1_id": "///A/162/O2'", "atom2_id": "///A/2236/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 399, "atom1_serNum": 3427, "atom2_serNum": 44316, "donAcc_type": "acceptable", "distance": 3.145, "atom1_id": "///A/162/O2'", "atom2_id": "///A/2237/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 400, "atom1_serNum": 3431, "atom2_serNum": 3516, "donAcc_type": "standard", "distance": 3.546, "atom1_id": "///A/162/N7", "atom2_id": "///A/166/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 401, "atom1_serNum": 3434, "atom2_serNum": 3517, "donAcc_type": "standard", "distance": 3.476, "atom1_id": "///A/162/N6", "atom2_id": "///A/166/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 402, "atom1_serNum": 3434, "atom2_serNum": 3535, "donAcc_type": "standard", "distance": 2.968, "atom1_id": "///A/162/N6", "atom2_id": "///A/167/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 403, "atom1_serNum": 3435, "atom2_serNum": 44508, "donAcc_type": "acceptable", "distance": 3.269, "atom1_id": "///A/162/N1", "atom2_id": "///A/2246/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 404, "atom1_serNum": 3437, "atom2_serNum": 44518, "donAcc_type": "standard", "distance": 3.593, "atom1_id": "///A/162/N3", "atom2_id": "///A/2246/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 405, "atom1_serNum": 3449, "atom2_serNum": 3516, "donAcc_type": "acceptable", "distance": 2.686, "atom1_id": "///A/163/O2'", "atom2_id": "///A/166/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 406, "atom1_serNum": 3456, "atom2_serNum": 44508, "donAcc_type": "acceptable", "distance": 3.700, "atom1_id": "///A/163/O4", "atom2_id": "///A/2246/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 407, "atom1_serNum": 3456, "atom2_serNum": 44527, "donAcc_type": "questionable", "distance": 3.291, "atom1_id": "///A/163/O4", "atom2_id": "///A/2247/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 408, "atom1_serNum": 3469, "atom2_serNum": 3485, "donAcc_type": "acceptable", "distance": 2.848, "atom1_id": "///A/164/O2'", "atom2_id": "///A/165/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 409, "atom1_serNum": 3481, "atom2_serNum": 3513, "donAcc_type": "questionable", "distance": 3.047, "atom1_id": "///A/165/OP2", "atom2_id": "///A/166/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 410, "atom1_serNum": 3489, "atom2_serNum": 3500, "donAcc_type": "acceptable", "distance": 2.834, "atom1_id": "///A/165/O2'", "atom2_id": "///A/166/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 411, "atom1_serNum": 3641, "atom2_serNum": 3657, "donAcc_type": "acceptable", "distance": 2.933, "atom1_id": "///A/172/O2'", "atom2_id": "///A/173/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 412, "atom1_serNum": 3690, "atom2_serNum": 3710, "donAcc_type": "questionable", "distance": 3.011, "atom1_id": "///A/174/O4", "atom2_id": "///A/175/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 413, "atom1_serNum": 3703, "atom2_serNum": 3717, "donAcc_type": "acceptable", "distance": 2.532, "atom1_id": "///A/175/O2'", "atom2_id": "///A/176/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 414, "atom1_serNum": 3703, "atom2_serNum": 3739, "donAcc_type": "acceptable", "distance": 2.985, "atom1_id": "///A/175/O2'", "atom2_id": "///A/177/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 415, "atom1_serNum": 3726, "atom2_serNum": 3741, "donAcc_type": "acceptable", "distance": 3.097, "atom1_id": "///A/176/O2'", "atom2_id": "///A/177/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 416, "atom1_serNum": 3748, "atom2_serNum": 3767, "donAcc_type": "acceptable", "distance": 3.337, "atom1_id": "///A/177/O2'", "atom2_id": "///A/178/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 417, "atom1_serNum": 3877, "atom2_serNum": 10297, "donAcc_type": "questionable", "distance": 2.555, "atom1_id": "///A/183/O4'", "atom2_id": "///A/482/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 418, "atom1_serNum": 3881, "atom2_serNum": 3930, "donAcc_type": "acceptable", "distance": 3.141, "atom1_id": "///A/183/O2'", "atom2_id": "///A/185/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 419, "atom1_serNum": 3926, "atom2_serNum": 10261, "donAcc_type": "acceptable", "distance": 2.758, "atom1_id": "///A/185/O2'", "atom2_id": "///A/480/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 420, "atom1_serNum": 3933, "atom2_serNum": 4642, "donAcc_type": "standard", "distance": 2.818, "atom1_id": "///A/185/N6", "atom2_id": "///A/218/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 421, "atom1_serNum": 3934, "atom2_serNum": 4643, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///A/185/N1", "atom2_id": "///A/218/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 422, "atom1_serNum": 3936, "atom2_serNum": 10261, "donAcc_type": "acceptable", "distance": 2.925, "atom1_id": "///A/185/N3", "atom2_id": "///A/480/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 423, "atom1_serNum": 3944, "atom2_serNum": 10261, "donAcc_type": "acceptable", "distance": 3.258, "atom1_id": "///A/186/O4'", "atom2_id": "///A/480/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 424, "atom1_serNum": 3948, "atom2_serNum": 10249, "donAcc_type": "acceptable", "distance": 2.509, "atom1_id": "///A/186/O2'", "atom2_id": "///A/479/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 425, "atom1_serNum": 3952, "atom2_serNum": 4622, "donAcc_type": "standard", "distance": 2.697, "atom1_id": "///A/186/O2", "atom2_id": "///A/217/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 426, "atom1_serNum": 3953, "atom2_serNum": 4620, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///A/186/N3", "atom2_id": "///A/217/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 427, "atom1_serNum": 3955, "atom2_serNum": 4597, "donAcc_type": "questionable", "distance": 3.030, "atom1_id": "///A/186/N4", "atom2_id": "///A/216/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 428, "atom1_serNum": 3955, "atom2_serNum": 4619, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///A/186/N4", "atom2_id": "///A/217/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 429, "atom1_serNum": 3968, "atom2_serNum": 4680, "donAcc_type": "acceptable", "distance": 2.886, "atom1_id": "///A/187/O2'", "atom2_id": "///A/220/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 430, "atom1_serNum": 3968, "atom2_serNum": 4690, "donAcc_type": "acceptable", "distance": 3.260, "atom1_id": "///A/187/O2'", "atom2_id": "///A/220/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 431, "atom1_serNum": 3972, "atom2_serNum": 4577, "donAcc_type": "standard", "distance": 2.758, "atom1_id": "///A/187/O2", "atom2_id": "///A/215/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 432, "atom1_serNum": 3973, "atom2_serNum": 4575, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///A/187/N3", "atom2_id": "///A/215/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 433, "atom1_serNum": 3975, "atom2_serNum": 4574, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/187/N4", "atom2_id": "///A/215/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 434, "atom1_serNum": 3992, "atom2_serNum": 4554, "donAcc_type": "standard", "distance": 2.774, "atom1_id": "///A/188/O2", "atom2_id": "///A/214/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 435, "atom1_serNum": 3993, "atom2_serNum": 4552, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///A/188/N3", "atom2_id": "///A/214/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 436, "atom1_serNum": 3995, "atom2_serNum": 4551, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///A/188/N4", "atom2_id": "///A/214/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 437, "atom1_serNum": 4015, "atom2_serNum": 4531, "donAcc_type": "standard", "distance": 2.959, "atom1_id": "///A/189/O6", "atom2_id": "///A/213/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 438, "atom1_serNum": 4016, "atom2_serNum": 4529, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/189/N1", "atom2_id": "///A/213/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 439, "atom1_serNum": 4018, "atom2_serNum": 4528, "donAcc_type": "standard", "distance": 2.771, "atom1_id": "///A/189/N2", "atom2_id": "///A/213/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 440, "atom1_serNum": 4038, "atom2_serNum": 4511, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///A/190/O6", "atom2_id": "///A/212/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 441, "atom1_serNum": 4039, "atom2_serNum": 4509, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/190/N1", "atom2_id": "///A/212/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 442, "atom1_serNum": 4041, "atom2_serNum": 4508, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///A/190/N2", "atom2_id": "///A/212/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 443, "atom1_serNum": 4061, "atom2_serNum": 4491, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///A/191/O6", "atom2_id": "///A/211/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 444, "atom1_serNum": 4062, "atom2_serNum": 4489, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///A/191/N1", "atom2_id": "///A/211/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 445, "atom1_serNum": 4064, "atom2_serNum": 4488, "donAcc_type": "standard", "distance": 2.766, "atom1_id": "///A/191/N2", "atom2_id": "///A/211/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 446, "atom1_serNum": 4077, "atom2_serNum": 4096, "donAcc_type": "acceptable", "distance": 3.274, "atom1_id": "///A/192/O2'", "atom2_id": "///A/193/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 447, "atom1_serNum": 4077, "atom2_serNum": 4469, "donAcc_type": "acceptable", "distance": 3.122, "atom1_id": "///A/192/O2'", "atom2_id": "///A/210/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 448, "atom1_serNum": 4084, "atom2_serNum": 4419, "donAcc_type": "acceptable", "distance": 2.309, "atom1_id": "///A/192/O6", "atom2_id": "///A/208/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 449, "atom1_serNum": 4085, "atom2_serNum": 4419, "donAcc_type": "acceptable", "distance": 3.114, "atom1_id": "///A/192/N1", "atom2_id": "///A/208/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 450, "atom1_serNum": 4085, "atom2_serNum": 4434, "donAcc_type": "standard", "distance": 3.906, "atom1_id": "///A/192/N1", "atom2_id": "///A/209/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 451, "atom1_serNum": 4087, "atom2_serNum": 4466, "donAcc_type": "standard", "distance": 2.946, "atom1_id": "///A/192/N2", "atom2_id": "///A/210/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 452, "atom1_serNum": 4088, "atom2_serNum": 4469, "donAcc_type": "standard", "distance": 3.004, "atom1_id": "///A/192/N3", "atom2_id": "///A/210/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 453, "atom1_serNum": 4092, "atom2_serNum": 4427, "donAcc_type": "standard", "distance": 3.108, "atom1_id": "///A/193/OP2", "atom2_id": "///A/208/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 454, "atom1_serNum": 4092, "atom2_serNum": 4429, "donAcc_type": "standard", "distance": 2.491, "atom1_id": "///A/193/OP2", "atom2_id": "///A/208/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 455, "atom1_serNum": 4100, "atom2_serNum": 15561, "donAcc_type": "acceptable", "distance": 2.728, "atom1_id": "///A/193/O2'", "atom2_id": "///A/726/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 456, "atom1_serNum": 4104, "atom2_serNum": 4447, "donAcc_type": "standard", "distance": 3.069, "atom1_id": "///A/193/N7", "atom2_id": "///A/209/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 457, "atom1_serNum": 4107, "atom2_serNum": 4446, "donAcc_type": "standard", "distance": 3.030, "atom1_id": "///A/193/N6", "atom2_id": "///A/209/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 458, "atom1_serNum": 4107, "atom2_serNum": 18148, "donAcc_type": "acceptable", "distance": 3.602, "atom1_id": "///A/193/N6", "atom2_id": "///A/846/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 459, "atom1_serNum": 4114, "atom2_serNum": 4404, "donAcc_type": "standard", "distance": 3.251, "atom1_id": "///A/194/OP2", "atom2_id": "///A/207/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 460, "atom1_serNum": 4122, "atom2_serNum": 15541, "donAcc_type": "acceptable", "distance": 2.750, "atom1_id": "///A/194/O2'", "atom2_id": "///A/725/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 461, "atom1_serNum": 4122, "atom2_serNum": 15545, "donAcc_type": "acceptable", "distance": 3.106, "atom1_id": "///A/194/O2'", "atom2_id": "///A/725/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 462, "atom1_serNum": 4126, "atom2_serNum": 4404, "donAcc_type": "standard", "distance": 3.406, "atom1_id": "///A/194/N7", "atom2_id": "///A/207/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 463, "atom1_serNum": 4129, "atom2_serNum": 4401, "donAcc_type": "standard", "distance": 3.672, "atom1_id": "///A/194/N6", "atom2_id": "///A/207/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 464, "atom1_serNum": 4144, "atom2_serNum": 18226, "donAcc_type": "acceptable", "distance": 3.221, "atom1_id": "///A/195/O2'", "atom2_id": "///A/849/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 465, "atom1_serNum": 4148, "atom2_serNum": 18216, "donAcc_type": "acceptable", "distance": 3.998, "atom1_id": "///A/195/O2", "atom2_id": "///A/849/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 466, "atom1_serNum": 4151, "atom2_serNum": 4375, "donAcc_type": "acceptable", "distance": 2.997, "atom1_id": "///A/195/N4", "atom2_id": "///A/206/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 467, "atom1_serNum": 4151, "atom2_serNum": 4385, "donAcc_type": "standard", "distance": 3.230, "atom1_id": "///A/195/N4", "atom2_id": "///A/206/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 468, "atom1_serNum": 4169, "atom2_serNum": 4359, "donAcc_type": "standard", "distance": 3.539, "atom1_id": "///A/196/N3", "atom2_id": "///A/205/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 469, "atom1_serNum": 4171, "atom2_serNum": 4360, "donAcc_type": "standard", "distance": 3.538, "atom1_id": "///A/196/O4", "atom2_id": "///A/205/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 470, "atom1_serNum": 4184, "atom2_serNum": 4203, "donAcc_type": "acceptable", "distance": 2.922, "atom1_id": "///A/197/O2'", "atom2_id": "///A/198/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 471, "atom1_serNum": 4191, "atom2_serNum": 4342, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///A/197/O6", "atom2_id": "///A/204/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 472, "atom1_serNum": 4192, "atom2_serNum": 4340, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///A/197/N1", "atom2_id": "///A/204/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 473, "atom1_serNum": 4194, "atom2_serNum": 4339, "donAcc_type": "standard", "distance": 2.740, "atom1_id": "///A/197/N2", "atom2_id": "///A/204/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 474, "atom1_serNum": 4199, "atom2_serNum": 4242, "donAcc_type": "questionable", "distance": 2.806, "atom1_id": "///A/198/OP2", "atom2_id": "///A/200/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 475, "atom1_serNum": 4200, "atom2_serNum": 4243, "donAcc_type": "questionable", "distance": 2.649, "atom1_id": "///A/198/O5'", "atom2_id": "///A/200/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 476, "atom1_serNum": 4207, "atom2_serNum": 5415, "donAcc_type": "acceptable", "distance": 3.479, "atom1_id": "///A/198/O2'", "atom2_id": "///A/254/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 477, "atom1_serNum": 4214, "atom2_serNum": 4297, "donAcc_type": "standard", "distance": 2.774, "atom1_id": "///A/198/N6", "atom2_id": "///A/202/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 478, "atom1_serNum": 4220, "atom2_serNum": 4258, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///A/199/OP1", "atom2_id": "///A/200/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 479, "atom1_serNum": 4251, "atom2_serNum": 4266, "donAcc_type": "acceptable", "distance": 2.226, "atom1_id": "///A/200/O2'", "atom2_id": "///A/201/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 480, "atom1_serNum": 4251, "atom2_serNum": 48626, "donAcc_type": "acceptable", "distance": 2.185, "atom1_id": "///A/200/O2'", "atom2_id": "///A/2459/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 481, "atom1_serNum": 4269, "atom2_serNum": 4289, "donAcc_type": "questionable", "distance": 2.861, "atom1_id": "///A/201/O4'", "atom2_id": "///A/202/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 482, "atom1_serNum": 4271, "atom2_serNum": 48637, "donAcc_type": "questionable", "distance": 2.696, "atom1_id": "///A/201/O3'", "atom2_id": "///A/2460/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 483, "atom1_serNum": 4277, "atom2_serNum": 48640, "donAcc_type": "questionable", "distance": 2.703, "atom1_id": "///A/201/O2", "atom2_id": "///A/2460/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 484, "atom1_serNum": 4280, "atom2_serNum": 45091, "donAcc_type": "standard", "distance": 3.249, "atom1_id": "///A/201/N4", "atom2_id": "///A/2273/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 485, "atom1_serNum": 4284, "atom2_serNum": 5345, "donAcc_type": "questionable", "distance": 3.244, "atom1_id": "///A/202/OP1", "atom2_id": "///A/251/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 486, "atom1_serNum": 4285, "atom2_serNum": 48637, "donAcc_type": "questionable", "distance": 2.672, "atom1_id": "///A/202/OP2", "atom2_id": "///A/2460/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 487, "atom1_serNum": 4300, "atom2_serNum": 45071, "donAcc_type": "standard", "distance": 2.617, "atom1_id": "///A/202/N6", "atom2_id": "///A/2272/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 488, "atom1_serNum": 4303, "atom2_serNum": 48644, "donAcc_type": "acceptable", "distance": 3.107, "atom1_id": "///A/202/N3", "atom2_id": "///A/2460/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 489, "atom1_serNum": 4307, "atom2_serNum": 48644, "donAcc_type": "acceptable", "distance": 3.360, "atom1_id": "///A/203/OP2", "atom2_id": "///A/2460/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 490, "atom1_serNum": 4367, "atom2_serNum": 4397, "donAcc_type": "acceptable", "distance": 3.277, "atom1_id": "///A/206/OP2", "atom2_id": "///A/207/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 491, "atom1_serNum": 4397, "atom2_serNum": 4411, "donAcc_type": "acceptable", "distance": 2.886, "atom1_id": "///A/207/O2'", "atom2_id": "///A/208/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 492, "atom1_serNum": 4419, "atom2_serNum": 4434, "donAcc_type": "acceptable", "distance": 3.074, "atom1_id": "///A/208/O2'", "atom2_id": "///A/209/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 493, "atom1_serNum": 4429, "atom2_serNum": 4449, "donAcc_type": "standard", "distance": 3.657, "atom1_id": "///A/208/N2", "atom2_id": "///A/209/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 494, "atom1_serNum": 4462, "atom2_serNum": 18144, "donAcc_type": "acceptable", "distance": 3.499, "atom1_id": "///A/210/O2'", "atom2_id": "///A/846/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 495, "atom1_serNum": 4484, "atom2_serNum": 15581, "donAcc_type": "acceptable", "distance": 3.128, "atom1_id": "///A/211/O2'", "atom2_id": "///A/727/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 496, "atom1_serNum": 4524, "atom2_serNum": 28522, "donAcc_type": "acceptable", "distance": 3.326, "atom1_id": "///A/213/O2'", "atom2_id": "///A/1405/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 497, "atom1_serNum": 4612, "atom2_serNum": 4628, "donAcc_type": "acceptable", "distance": 2.481, "atom1_id": "///A/217/O2'", "atom2_id": "///A/218/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 498, "atom1_serNum": 4612, "atom2_serNum": 4631, "donAcc_type": "acceptable", "distance": 2.759, "atom1_id": "///A/217/O2'", "atom2_id": "///A/218/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 499, "atom1_serNum": 4623, "atom2_serNum": 4658, "donAcc_type": "acceptable", "distance": 2.734, "atom1_id": "///A/217/N3", "atom2_id": "///A/219/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 500, "atom1_serNum": 4631, "atom2_serNum": 4658, "donAcc_type": "acceptable", "distance": 3.662, "atom1_id": "///A/218/O4'", "atom2_id": "///A/219/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 501, "atom1_serNum": 4645, "atom2_serNum": 10247, "donAcc_type": "standard", "distance": 3.763, "atom1_id": "///A/218/N2", "atom2_id": "///A/479/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 502, "atom1_serNum": 4645, "atom2_serNum": 10265, "donAcc_type": "standard", "distance": 3.219, "atom1_id": "///A/218/N2", "atom2_id": "///A/480/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 503, "atom1_serNum": 4662, "atom2_serNum": 10226, "donAcc_type": "questionable", "distance": 2.773, "atom1_id": "///A/219/N7", "atom2_id": "///A/478/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 504, "atom1_serNum": 4712, "atom2_serNum": 5071, "donAcc_type": "standard", "distance": 3.689, "atom1_id": "///A/221/N2", "atom2_id": "///A/238/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 505, "atom1_serNum": 4735, "atom2_serNum": 5053, "donAcc_type": "acceptable", "distance": 3.043, "atom1_id": "///A/222/N3", "atom2_id": "///A/237/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 506, "atom1_serNum": 4743, "atom2_serNum": 5053, "donAcc_type": "acceptable", "distance": 3.201, "atom1_id": "///A/223/O4'", "atom2_id": "///A/237/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 507, "atom1_serNum": 4747, "atom2_serNum": 5031, "donAcc_type": "acceptable", "distance": 3.121, "atom1_id": "///A/223/O2'", "atom2_id": "///A/236/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 508, "atom1_serNum": 4747, "atom2_serNum": 5041, "donAcc_type": "acceptable", "distance": 2.843, "atom1_id": "///A/223/O2'", "atom2_id": "///A/236/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 509, "atom1_serNum": 4747, "atom2_serNum": 5049, "donAcc_type": "acceptable", "distance": 3.610, "atom1_id": "///A/223/O2'", "atom2_id": "///A/237/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 510, "atom1_serNum": 4755, "atom2_serNum": 10145, "donAcc_type": "standard", "distance": 3.429, "atom1_id": "///A/223/N1", "atom2_id": "///A/475/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 511, "atom1_serNum": 4766, "atom2_serNum": 5031, "donAcc_type": "acceptable", "distance": 3.314, "atom1_id": "///A/224/O4'", "atom2_id": "///A/236/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 512, "atom1_serNum": 4770, "atom2_serNum": 5746, "donAcc_type": "acceptable", "distance": 2.877, "atom1_id": "///A/224/O2'", "atom2_id": "///A/269/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 513, "atom1_serNum": 4770, "atom2_serNum": 5749, "donAcc_type": "acceptable", "distance": 3.172, "atom1_id": "///A/224/O2'", "atom2_id": "///A/269/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 514, "atom1_serNum": 4777, "atom2_serNum": 5724, "donAcc_type": "standard", "distance": 3.441, "atom1_id": "///A/224/N6", "atom2_id": "///A/268/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 515, "atom1_serNum": 4792, "atom2_serNum": 4832, "donAcc_type": "acceptable", "distance": 3.510, "atom1_id": "///A/225/O2'", "atom2_id": "///A/227/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 516, "atom1_serNum": 4792, "atom2_serNum": 9983, "donAcc_type": "acceptable", "distance": 3.616, "atom1_id": "///A/225/O2'", "atom2_id": "///A/467/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 517, "atom1_serNum": 4796, "atom2_serNum": 5018, "donAcc_type": "standard", "distance": 3.391, "atom1_id": "///A/225/N7", "atom2_id": "///A/235/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 518, "atom1_serNum": 4799, "atom2_serNum": 5019, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///A/225/N6", "atom2_id": "///A/235/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 519, "atom1_serNum": 4812, "atom2_serNum": 9983, "donAcc_type": "acceptable", "distance": 3.575, "atom1_id": "///A/226/O3'", "atom2_id": "///A/467/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 520, "atom1_serNum": 4814, "atom2_serNum": 4827, "donAcc_type": "acceptable", "distance": 2.432, "atom1_id": "///A/226/O2'", "atom2_id": "///A/227/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 521, "atom1_serNum": 4814, "atom2_serNum": 9728, "donAcc_type": "acceptable", "distance": 3.469, "atom1_id": "///A/226/O2'", "atom2_id": "///A/455/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 522, "atom1_serNum": 4843, "atom2_serNum": 4995, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///A/227/O6", "atom2_id": "///A/234/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 523, "atom1_serNum": 4843, "atom2_serNum": 9963, "donAcc_type": "acceptable", "distance": 3.071, "atom1_id": "///A/227/O6", "atom2_id": "///A/466/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 524, "atom1_serNum": 4844, "atom2_serNum": 4993, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/227/N1", "atom2_id": "///A/234/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 525, "atom1_serNum": 4846, "atom2_serNum": 4992, "donAcc_type": "standard", "distance": 2.773, "atom1_id": "///A/227/N2", "atom2_id": "///A/234/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 526, "atom1_serNum": 4863, "atom2_serNum": 4975, "donAcc_type": "standard", "distance": 2.640, "atom1_id": "///A/228/O2", "atom2_id": "///A/233/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 527, "atom1_serNum": 4864, "atom2_serNum": 4973, "donAcc_type": "standard", "distance": 2.829, "atom1_id": "///A/228/N3", "atom2_id": "///A/233/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 528, "atom1_serNum": 4866, "atom2_serNum": 4972, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///A/228/N4", "atom2_id": "///A/233/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 529, "atom1_serNum": 4879, "atom2_serNum": 4930, "donAcc_type": "acceptable", "distance": 2.774, "atom1_id": "///A/229/O2'", "atom2_id": "///A/231/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 530, "atom1_serNum": 4886, "atom2_serNum": 9947, "donAcc_type": "standard", "distance": 3.374, "atom1_id": "///A/229/N6", "atom2_id": "///A/465/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 531, "atom1_serNum": 4889, "atom2_serNum": 4930, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///A/229/N3", "atom2_id": "///A/231/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 532, "atom1_serNum": 4901, "atom2_serNum": 48126, "donAcc_type": "acceptable", "distance": 3.508, "atom1_id": "///A/230/O2'", "atom2_id": "///A/2436/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 533, "atom1_serNum": 4908, "atom2_serNum": 9773, "donAcc_type": "acceptable", "distance": 3.093, "atom1_id": "///A/230/N6", "atom2_id": "///A/457/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 534, "atom1_serNum": 4908, "atom2_serNum": 9784, "donAcc_type": "standard", "distance": 2.967, "atom1_id": "///A/230/N6", "atom2_id": "///A/457/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 535, "atom1_serNum": 4909, "atom2_serNum": 9783, "donAcc_type": "standard", "distance": 2.806, "atom1_id": "///A/230/N1", "atom2_id": "///A/457/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 536, "atom1_serNum": 4923, "atom2_serNum": 4936, "donAcc_type": "acceptable", "distance": 2.271, "atom1_id": "///A/231/O2'", "atom2_id": "///A/232/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 537, "atom1_serNum": 4923, "atom2_serNum": 4956, "donAcc_type": "acceptable", "distance": 2.444, "atom1_id": "///A/231/O2'", "atom2_id": "///A/233/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 538, "atom1_serNum": 4965, "atom2_serNum": 4981, "donAcc_type": "acceptable", "distance": 2.668, "atom1_id": "///A/233/O2'", "atom2_id": "///A/234/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 539, "atom1_serNum": 4995, "atom2_serNum": 9961, "donAcc_type": "standard", "distance": 3.997, "atom1_id": "///A/234/N4", "atom2_id": "///A/466/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 540, "atom1_serNum": 5018, "atom2_serNum": 9974, "donAcc_type": "standard", "distance": 2.994, "atom1_id": "///A/235/N2", "atom2_id": "///A/467/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 541, "atom1_serNum": 5038, "atom2_serNum": 10183, "donAcc_type": "standard", "distance": 3.388, "atom1_id": "///A/236/N6", "atom2_id": "///A/476/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 542, "atom1_serNum": 5057, "atom2_serNum": 10204, "donAcc_type": "standard", "distance": 3.041, "atom1_id": "///A/237/O2", "atom2_id": "///A/477/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 543, "atom1_serNum": 5058, "atom2_serNum": 10205, "donAcc_type": "standard", "distance": 2.832, "atom1_id": "///A/237/N3", "atom2_id": "///A/477/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 544, "atom1_serNum": 5078, "atom2_serNum": 5666, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///A/238/N3", "atom2_id": "///A/265/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 545, "atom1_serNum": 5080, "atom2_serNum": 5665, "donAcc_type": "standard", "distance": 2.974, "atom1_id": "///A/238/O4", "atom2_id": "///A/265/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 546, "atom1_serNum": 5093, "atom2_serNum": 10219, "donAcc_type": "acceptable", "distance": 3.641, "atom1_id": "///A/239/O2'", "atom2_id": "///A/478/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 547, "atom1_serNum": 5097, "atom2_serNum": 5645, "donAcc_type": "standard", "distance": 2.751, "atom1_id": "///A/239/O2", "atom2_id": "///A/264/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 548, "atom1_serNum": 5098, "atom2_serNum": 5643, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/239/N3", "atom2_id": "///A/264/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 549, "atom1_serNum": 5100, "atom2_serNum": 5642, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/239/N4", "atom2_id": "///A/264/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 550, "atom1_serNum": 5113, "atom2_serNum": 13979, "donAcc_type": "acceptable", "distance": 2.926, "atom1_id": "///A/240/O2'", "atom2_id": "///A/653/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 551, "atom1_serNum": 5117, "atom2_serNum": 5622, "donAcc_type": "standard", "distance": 2.711, "atom1_id": "///A/240/O2", "atom2_id": "///A/263/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 552, "atom1_serNum": 5118, "atom2_serNum": 5620, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///A/240/N3", "atom2_id": "///A/263/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 553, "atom1_serNum": 5120, "atom2_serNum": 5619, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///A/240/N4", "atom2_id": "///A/263/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 554, "atom1_serNum": 5133, "atom2_serNum": 13957, "donAcc_type": "acceptable", "distance": 2.926, "atom1_id": "///A/241/O2'", "atom2_id": "///A/652/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 555, "atom1_serNum": 5133, "atom2_serNum": 13967, "donAcc_type": "acceptable", "distance": 3.359, "atom1_id": "///A/241/O2'", "atom2_id": "///A/652/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 556, "atom1_serNum": 5137, "atom2_serNum": 5599, "donAcc_type": "standard", "distance": 2.755, "atom1_id": "///A/241/O2", "atom2_id": "///A/262/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 557, "atom1_serNum": 5138, "atom2_serNum": 5597, "donAcc_type": "standard", "distance": 2.858, "atom1_id": "///A/241/N3", "atom2_id": "///A/262/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 558, "atom1_serNum": 5140, "atom2_serNum": 5596, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///A/241/N4", "atom2_id": "///A/262/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 559, "atom1_serNum": 5153, "atom2_serNum": 14309, "donAcc_type": "acceptable", "distance": 3.191, "atom1_id": "///A/242/O2'", "atom2_id": "///A/668/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 560, "atom1_serNum": 5165, "atom2_serNum": 5196, "donAcc_type": "acceptable", "distance": 2.678, "atom1_id": "///A/243/OP2", "atom2_id": "///A/244/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 561, "atom1_serNum": 5173, "atom2_serNum": 5554, "donAcc_type": "acceptable", "distance": 3.008, "atom1_id": "///A/243/O2'", "atom2_id": "///A/260/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 562, "atom1_serNum": 5183, "atom2_serNum": 5551, "donAcc_type": "standard", "distance": 2.990, "atom1_id": "///A/243/N2", "atom2_id": "///A/260/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 563, "atom1_serNum": 5184, "atom2_serNum": 5554, "donAcc_type": "standard", "distance": 3.020, "atom1_id": "///A/243/N3", "atom2_id": "///A/260/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 564, "atom1_serNum": 5184, "atom2_serNum": 5576, "donAcc_type": "standard", "distance": 3.143, "atom1_id": "///A/243/N3", "atom2_id": "///A/261/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 565, "atom1_serNum": 5192, "atom2_serNum": 5237, "donAcc_type": "questionable", "distance": 3.301, "atom1_id": "///A/244/O4'", "atom2_id": "///A/246/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 566, "atom1_serNum": 5200, "atom2_serNum": 5532, "donAcc_type": "standard", "distance": 3.837, "atom1_id": "///A/244/N7", "atom2_id": "///A/259/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 567, "atom1_serNum": 5203, "atom2_serNum": 5517, "donAcc_type": "standard", "distance": 3.166, "atom1_id": "///A/244/N6", "atom2_id": "///A/259/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 568, "atom1_serNum": 5218, "atom2_serNum": 5233, "donAcc_type": "acceptable", "distance": 2.664, "atom1_id": "///A/245/O2'", "atom2_id": "///A/246/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 569, "atom1_serNum": 5218, "atom2_serNum": 5487, "donAcc_type": "acceptable", "distance": 2.874, "atom1_id": "///A/245/O2'", "atom2_id": "///A/257/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 570, "atom1_serNum": 5228, "atom2_serNum": 5248, "donAcc_type": "standard", "distance": 3.051, "atom1_id": "///A/245/N2", "atom2_id": "///A/246/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 571, "atom1_serNum": 5228, "atom2_serNum": 5495, "donAcc_type": "standard", "distance": 3.042, "atom1_id": "///A/245/N2", "atom2_id": "///A/258/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 572, "atom1_serNum": 5245, "atom2_serNum": 5510, "donAcc_type": "standard", "distance": 3.013, "atom1_id": "///A/246/O2", "atom2_id": "///A/258/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 573, "atom1_serNum": 5246, "atom2_serNum": 5507, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///A/246/N3", "atom2_id": "///A/258/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 574, "atom1_serNum": 5265, "atom2_serNum": 5490, "donAcc_type": "standard", "distance": 2.684, "atom1_id": "///A/247/N7", "atom2_id": "///A/257/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 575, "atom1_serNum": 5268, "atom2_serNum": 5480, "donAcc_type": "acceptable", "distance": 3.330, "atom1_id": "///A/247/N6", "atom2_id": "///A/257/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 576, "atom1_serNum": 5268, "atom2_serNum": 5491, "donAcc_type": "standard", "distance": 3.066, "atom1_id": "///A/247/N6", "atom2_id": "///A/257/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 577, "atom1_serNum": 5290, "atom2_serNum": 5467, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///A/248/O6", "atom2_id": "///A/256/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 578, "atom1_serNum": 5291, "atom2_serNum": 5465, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///A/248/N1", "atom2_id": "///A/256/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 579, "atom1_serNum": 5293, "atom2_serNum": 5464, "donAcc_type": "standard", "distance": 2.703, "atom1_id": "///A/248/N2", "atom2_id": "///A/256/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 580, "atom1_serNum": 5310, "atom2_serNum": 5447, "donAcc_type": "standard", "distance": 2.716, "atom1_id": "///A/249/O2", "atom2_id": "///A/255/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 581, "atom1_serNum": 5311, "atom2_serNum": 5445, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/249/N3", "atom2_id": "///A/255/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 582, "atom1_serNum": 5313, "atom2_serNum": 5444, "donAcc_type": "standard", "distance": 2.966, "atom1_id": "///A/249/N4", "atom2_id": "///A/255/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 583, "atom1_serNum": 5326, "atom2_serNum": 5342, "donAcc_type": "acceptable", "distance": 2.987, "atom1_id": "///A/250/O2'", "atom2_id": "///A/251/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 584, "atom1_serNum": 5326, "atom2_serNum": 5368, "donAcc_type": "acceptable", "distance": 2.925, "atom1_id": "///A/250/O2'", "atom2_id": "///A/252/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 585, "atom1_serNum": 5336, "atom2_serNum": 5419, "donAcc_type": "standard", "distance": 2.245, "atom1_id": "///A/250/N2", "atom2_id": "///A/254/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 586, "atom1_serNum": 5337, "atom2_serNum": 5422, "donAcc_type": "standard", "distance": 2.723, "atom1_id": "///A/250/N3", "atom2_id": "///A/254/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 587, "atom1_serNum": 5359, "atom2_serNum": 5383, "donAcc_type": "standard", "distance": 3.382, "atom1_id": "///A/251/N2", "atom2_id": "///A/253/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 588, "atom1_serNum": 5372, "atom2_serNum": 5376, "donAcc_type": "acceptable", "distance": 3.005, "atom1_id": "///A/252/O2'", "atom2_id": "///A/252/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 589, "atom1_serNum": 5372, "atom2_serNum": 5384, "donAcc_type": "acceptable", "distance": 3.180, "atom1_id": "///A/252/O2'", "atom2_id": "///A/253/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 590, "atom1_serNum": 5480, "atom2_serNum": 5499, "donAcc_type": "acceptable", "distance": 2.808, "atom1_id": "///A/257/O2'", "atom2_id": "///A/258/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 591, "atom1_serNum": 5525, "atom2_serNum": 5540, "donAcc_type": "acceptable", "distance": 2.765, "atom1_id": "///A/259/O2'", "atom2_id": "///A/260/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 592, "atom1_serNum": 5589, "atom2_serNum": 14287, "donAcc_type": "acceptable", "distance": 2.679, "atom1_id": "///A/262/O2'", "atom2_id": "///A/667/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 593, "atom1_serNum": 5600, "atom2_serNum": 14287, "donAcc_type": "acceptable", "distance": 3.211, "atom1_id": "///A/262/N3", "atom2_id": "///A/667/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 594, "atom1_serNum": 5612, "atom2_serNum": 13965, "donAcc_type": "acceptable", "distance": 3.785, "atom1_id": "///A/263/O2'", "atom2_id": "///A/652/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 595, "atom1_serNum": 5622, "atom2_serNum": 13989, "donAcc_type": "standard", "distance": 3.918, "atom1_id": "///A/263/N2", "atom2_id": "///A/653/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 596, "atom1_serNum": 5635, "atom2_serNum": 14001, "donAcc_type": "acceptable", "distance": 3.613, "atom1_id": "///A/264/O2'", "atom2_id": "///A/654/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 597, "atom1_serNum": 5658, "atom2_serNum": 10197, "donAcc_type": "acceptable", "distance": 3.065, "atom1_id": "///A/265/O2'", "atom2_id": "///A/477/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 598, "atom1_serNum": 5668, "atom2_serNum": 10197, "donAcc_type": "acceptable", "distance": 2.856, "atom1_id": "///A/265/N3", "atom2_id": "///A/477/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 599, "atom1_serNum": 5676, "atom2_serNum": 10197, "donAcc_type": "acceptable", "distance": 3.637, "atom1_id": "///A/266/O4'", "atom2_id": "///A/477/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 600, "atom1_serNum": 5680, "atom2_serNum": 10175, "donAcc_type": "acceptable", "distance": 3.170, "atom1_id": "///A/266/O2'", "atom2_id": "///A/476/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 601, "atom1_serNum": 5680, "atom2_serNum": 10185, "donAcc_type": "acceptable", "distance": 2.416, "atom1_id": "///A/266/O2'", "atom2_id": "///A/476/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 602, "atom1_serNum": 5700, "atom2_serNum": 5711, "donAcc_type": "acceptable", "distance": 2.553, "atom1_id": "///A/267/O2'", "atom2_id": "///A/268/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 603, "atom1_serNum": 5700, "atom2_serNum": 10161, "donAcc_type": "acceptable", "distance": 3.175, "atom1_id": "///A/267/O2'", "atom2_id": "///A/475/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 604, "atom1_serNum": 5720, "atom2_serNum": 5733, "donAcc_type": "acceptable", "distance": 2.594, "atom1_id": "///A/268/O2'", "atom2_id": "///A/269/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 605, "atom1_serNum": 5727, "atom2_serNum": 10133, "donAcc_type": "acceptable", "distance": 2.381, "atom1_id": "///A/268/N6", "atom2_id": "///A/474/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 606, "atom1_serNum": 5742, "atom2_serNum": 6880, "donAcc_type": "acceptable", "distance": 3.474, "atom1_id": "///A/269/O2'", "atom2_id": "///A/322/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 607, "atom1_serNum": 5749, "atom2_serNum": 10120, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///A/269/O6", "atom2_id": "///A/473/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 608, "atom1_serNum": 5750, "atom2_serNum": 10118, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///A/269/N1", "atom2_id": "///A/473/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 609, "atom1_serNum": 5752, "atom2_serNum": 6872, "donAcc_type": "acceptable", "distance": 3.316, "atom1_id": "///A/269/N2", "atom2_id": "///A/322/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 610, "atom1_serNum": 5752, "atom2_serNum": 10117, "donAcc_type": "standard", "distance": 2.768, "atom1_id": "///A/269/N2", "atom2_id": "///A/473/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 611, "atom1_serNum": 5765, "atom2_serNum": 6894, "donAcc_type": "acceptable", "distance": 3.532, "atom1_id": "///A/270/O2'", "atom2_id": "///A/323/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 612, "atom1_serNum": 5769, "atom2_serNum": 10100, "donAcc_type": "standard", "distance": 2.792, "atom1_id": "///A/270/O2", "atom2_id": "///A/472/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 613, "atom1_serNum": 5770, "atom2_serNum": 10098, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/270/N3", "atom2_id": "///A/472/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 614, "atom1_serNum": 5770, "atom2_serNum": 10120, "donAcc_type": "standard", "distance": 3.490, "atom1_id": "///A/270/N3", "atom2_id": "///A/473/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 615, "atom1_serNum": 5772, "atom2_serNum": 10097, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///A/270/N4", "atom2_id": "///A/472/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 616, "atom1_serNum": 5789, "atom2_serNum": 10077, "donAcc_type": "standard", "distance": 2.743, "atom1_id": "///A/271/O2", "atom2_id": "///A/471/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 617, "atom1_serNum": 5790, "atom2_serNum": 10075, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///A/271/N3", "atom2_id": "///A/471/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 618, "atom1_serNum": 5792, "atom2_serNum": 10074, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/271/N4", "atom2_id": "///A/471/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 619, "atom1_serNum": 5809, "atom2_serNum": 8919, "donAcc_type": "standard", "distance": 2.738, "atom1_id": "///A/272/O2", "atom2_id": "///A/417/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 620, "atom1_serNum": 5810, "atom2_serNum": 8917, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///A/272/N3", "atom2_id": "///A/417/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 621, "atom1_serNum": 5812, "atom2_serNum": 6361, "donAcc_type": "acceptable", "distance": 3.123, "atom1_id": "///A/272/N4", "atom2_id": "///A/298/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 622, "atom1_serNum": 5812, "atom2_serNum": 8916, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///A/272/N4", "atom2_id": "///A/417/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 623, "atom1_serNum": 5817, "atom2_serNum": 6346, "donAcc_type": "standard", "distance": 2.762, "atom1_id": "///A/273/OP2", "atom2_id": "///A/297/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 624, "atom1_serNum": 5817, "atom2_serNum": 6348, "donAcc_type": "standard", "distance": 2.983, "atom1_id": "///A/273/OP2", "atom2_id": "///A/297/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 625, "atom1_serNum": 5817, "atom2_serNum": 6368, "donAcc_type": "questionable", "distance": 2.801, "atom1_id": "///A/273/OP2", "atom2_id": "///A/298/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 626, "atom1_serNum": 5829, "atom2_serNum": 6366, "donAcc_type": "standard", "distance": 2.714, "atom1_id": "///A/273/N7", "atom2_id": "///A/298/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 627, "atom1_serNum": 5832, "atom2_serNum": 6365, "donAcc_type": "standard", "distance": 3.104, "atom1_id": "///A/273/N6", "atom2_id": "///A/298/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 628, "atom1_serNum": 5832, "atom2_serNum": 8889, "donAcc_type": "acceptable", "distance": 3.814, "atom1_id": "///A/273/N6", "atom2_id": "///A/416/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 629, "atom1_serNum": 5839, "atom2_serNum": 6348, "donAcc_type": "standard", "distance": 3.863, "atom1_id": "///A/274/OP2", "atom2_id": "///A/297/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 630, "atom1_serNum": 5847, "atom2_serNum": 8869, "donAcc_type": "acceptable", "distance": 2.809, "atom1_id": "///A/274/O2'", "atom2_id": "///A/415/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 631, "atom1_serNum": 5851, "atom2_serNum": 6366, "donAcc_type": "standard", "distance": 3.212, "atom1_id": "///A/274/N7", "atom2_id": "///A/298/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 632, "atom1_serNum": 5857, "atom2_serNum": 8869, "donAcc_type": "acceptable", "distance": 3.264, "atom1_id": "///A/274/N3", "atom2_id": "///A/415/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 633, "atom1_serNum": 5869, "atom2_serNum": 5879, "donAcc_type": "acceptable", "distance": 2.938, "atom1_id": "///A/275/O2'", "atom2_id": "///A/275/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 634, "atom1_serNum": 5869, "atom2_serNum": 6512, "donAcc_type": "acceptable", "distance": 2.233, "atom1_id": "///A/275/O2'", "atom2_id": "///A/305/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 635, "atom1_serNum": 5876, "atom2_serNum": 6349, "donAcc_type": "standard", "distance": 2.740, "atom1_id": "///A/275/N6", "atom2_id": "///A/297/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 636, "atom1_serNum": 5877, "atom2_serNum": 6338, "donAcc_type": "acceptable", "distance": 3.025, "atom1_id": "///A/275/N1", "atom2_id": "///A/297/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 637, "atom1_serNum": 5882, "atom2_serNum": 8849, "donAcc_type": "acceptable", "distance": 2.302, "atom1_id": "///A/276/OP1", "atom2_id": "///A/414/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 638, "atom1_serNum": 5887, "atom2_serNum": 6512, "donAcc_type": "acceptable", "distance": 3.031, "atom1_id": "///A/276/O4'", "atom2_id": "///A/305/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 639, "atom1_serNum": 5891, "atom2_serNum": 6525, "donAcc_type": "acceptable", "distance": 2.963, "atom1_id": "///A/276/O2'", "atom2_id": "///A/306/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 640, "atom1_serNum": 5895, "atom2_serNum": 6302, "donAcc_type": "standard", "distance": 2.747, "atom1_id": "///A/276/O2", "atom2_id": "///A/295/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 641, "atom1_serNum": 5896, "atom2_serNum": 6300, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/276/N3", "atom2_id": "///A/295/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 642, "atom1_serNum": 5898, "atom2_serNum": 6299, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///A/276/N4", "atom2_id": "///A/295/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 643, "atom1_serNum": 5915, "atom2_serNum": 6279, "donAcc_type": "standard", "distance": 2.736, "atom1_id": "///A/277/O2", "atom2_id": "///A/294/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 644, "atom1_serNum": 5916, "atom2_serNum": 6277, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///A/277/N3", "atom2_id": "///A/294/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 645, "atom1_serNum": 5918, "atom2_serNum": 6276, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///A/277/N4", "atom2_id": "///A/294/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 646, "atom1_serNum": 5938, "atom2_serNum": 6256, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///A/278/N6", "atom2_id": "///A/293/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 647, "atom1_serNum": 5939, "atom2_serNum": 6254, "donAcc_type": "standard", "distance": 2.825, "atom1_id": "///A/278/N1", "atom2_id": "///A/293/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 648, "atom1_serNum": 5960, "atom2_serNum": 6236, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///A/279/N6", "atom2_id": "///A/292/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 649, "atom1_serNum": 5961, "atom2_serNum": 6234, "donAcc_type": "standard", "distance": 2.783, "atom1_id": "///A/279/N1", "atom2_id": "///A/292/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 650, "atom1_serNum": 6005, "atom2_serNum": 6196, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///A/281/N6", "atom2_id": "///A/290/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 651, "atom1_serNum": 6006, "atom2_serNum": 6194, "donAcc_type": "standard", "distance": 2.604, "atom1_id": "///A/281/N1", "atom2_id": "///A/290/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 652, "atom1_serNum": 6020, "atom2_serNum": 6035, "donAcc_type": "acceptable", "distance": 2.462, "atom1_id": "///A/282/O2'", "atom2_id": "///A/283/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 653, "atom1_serNum": 6020, "atom2_serNum": 6039, "donAcc_type": "acceptable", "distance": 3.149, "atom1_id": "///A/282/O2'", "atom2_id": "///A/283/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 654, "atom1_serNum": 6027, "atom2_serNum": 6176, "donAcc_type": "standard", "distance": 2.768, "atom1_id": "///A/282/O6", "atom2_id": "///A/289/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 655, "atom1_serNum": 6028, "atom2_serNum": 6174, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///A/282/N1", "atom2_id": "///A/289/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 656, "atom1_serNum": 6030, "atom2_serNum": 6173, "donAcc_type": "standard", "distance": 2.831, "atom1_id": "///A/282/N2", "atom2_id": "///A/289/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 657, "atom1_serNum": 6050, "atom2_serNum": 6156, "donAcc_type": "standard", "distance": 2.829, "atom1_id": "///A/283/O6", "atom2_id": "///A/288/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 658, "atom1_serNum": 6051, "atom2_serNum": 6154, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///A/283/N1", "atom2_id": "///A/288/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 659, "atom1_serNum": 6053, "atom2_serNum": 6153, "donAcc_type": "standard", "distance": 2.732, "atom1_id": "///A/283/N2", "atom2_id": "///A/288/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 660, "atom1_serNum": 6053, "atom2_serNum": 6174, "donAcc_type": "standard", "distance": 2.600, "atom1_id": "///A/283/N2", "atom2_id": "///A/289/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 661, "atom1_serNum": 6066, "atom2_serNum": 6077, "donAcc_type": "acceptable", "distance": 2.686, "atom1_id": "///A/284/O2'", "atom2_id": "///A/285/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 662, "atom1_serNum": 6070, "atom2_serNum": 6153, "donAcc_type": "questionable", "distance": 2.729, "atom1_id": "///A/284/O2", "atom2_id": "///A/288/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 663, "atom1_serNum": 6098, "atom2_serNum": 6133, "donAcc_type": "questionable", "distance": 2.905, "atom1_id": "///A/286/OP2", "atom2_id": "///A/287/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 664, "atom1_serNum": 6106, "atom2_serNum": 6117, "donAcc_type": "acceptable", "distance": 3.025, "atom1_id": "///A/286/O2'", "atom2_id": "///A/287/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 665, "atom1_serNum": 6118, "atom2_serNum": 6156, "donAcc_type": "standard", "distance": 2.285, "atom1_id": "///A/287/OP2", "atom2_id": "///A/288/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 666, "atom1_serNum": 6149, "atom2_serNum": 6160, "donAcc_type": "acceptable", "distance": 2.458, "atom1_id": "///A/288/O2'", "atom2_id": "///A/289/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 667, "atom1_serNum": 6149, "atom2_serNum": 6162, "donAcc_type": "acceptable", "distance": 2.727, "atom1_id": "///A/288/O2'", "atom2_id": "///A/289/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 668, "atom1_serNum": 6169, "atom2_serNum": 6181, "donAcc_type": "acceptable", "distance": 2.561, "atom1_id": "///A/289/O2'", "atom2_id": "///A/290/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 669, "atom1_serNum": 6169, "atom2_serNum": 6182, "donAcc_type": "acceptable", "distance": 2.981, "atom1_id": "///A/289/O2'", "atom2_id": "///A/290/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 670, "atom1_serNum": 6169, "atom2_serNum": 6185, "donAcc_type": "acceptable", "distance": 3.178, "atom1_id": "///A/289/O2'", "atom2_id": "///A/290/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 671, "atom1_serNum": 6189, "atom2_serNum": 6202, "donAcc_type": "acceptable", "distance": 2.273, "atom1_id": "///A/290/O2'", "atom2_id": "///A/291/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 672, "atom1_serNum": 6189, "atom2_serNum": 6221, "donAcc_type": "acceptable", "distance": 3.377, "atom1_id": "///A/290/O2'", "atom2_id": "///A/292/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 673, "atom1_serNum": 6209, "atom2_serNum": 6225, "donAcc_type": "acceptable", "distance": 3.168, "atom1_id": "///A/291/O2'", "atom2_id": "///A/292/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 674, "atom1_serNum": 6249, "atom2_serNum": 6262, "donAcc_type": "acceptable", "distance": 2.996, "atom1_id": "///A/293/O2'", "atom2_id": "///A/294/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 675, "atom1_serNum": 6315, "atom2_serNum": 6331, "donAcc_type": "acceptable", "distance": 2.235, "atom1_id": "///A/296/O2'", "atom2_id": "///A/297/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 676, "atom1_serNum": 6315, "atom2_serNum": 6334, "donAcc_type": "acceptable", "distance": 2.499, "atom1_id": "///A/296/O2'", "atom2_id": "///A/297/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 677, "atom1_serNum": 6338, "atom2_serNum": 6357, "donAcc_type": "acceptable", "distance": 3.071, "atom1_id": "///A/297/O2'", "atom2_id": "///A/298/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 678, "atom1_serNum": 6381, "atom2_serNum": 6394, "donAcc_type": "acceptable", "distance": 2.968, "atom1_id": "///A/299/O2'", "atom2_id": "///A/300/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 679, "atom1_serNum": 6386, "atom2_serNum": 8893, "donAcc_type": "standard", "distance": 3.493, "atom1_id": "///A/299/N3", "atom2_id": "///A/416/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 680, "atom1_serNum": 6388, "atom2_serNum": 8893, "donAcc_type": "questionable", "distance": 2.968, "atom1_id": "///A/299/O4", "atom2_id": "///A/416/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 681, "atom1_serNum": 6401, "atom2_serNum": 9995, "donAcc_type": "acceptable", "distance": 2.735, "atom1_id": "///A/300/O2'", "atom2_id": "///A/468/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 682, "atom1_serNum": 6405, "atom2_serNum": 10003, "donAcc_type": "acceptable", "distance": 2.842, "atom1_id": "///A/300/N7", "atom2_id": "///A/468/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 683, "atom1_serNum": 6408, "atom2_serNum": 9649, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/300/O6", "atom2_id": "///A/451/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 684, "atom1_serNum": 6409, "atom2_serNum": 9647, "donAcc_type": "standard", "distance": 2.865, "atom1_id": "///A/300/N1", "atom2_id": "///A/451/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 685, "atom1_serNum": 6411, "atom2_serNum": 9646, "donAcc_type": "standard", "distance": 2.740, "atom1_id": "///A/300/N2", "atom2_id": "///A/451/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 686, "atom1_serNum": 6431, "atom2_serNum": 6457, "donAcc_type": "questionable", "distance": 2.866, "atom1_id": "///A/301/O4", "atom2_id": "///A/303/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 687, "atom1_serNum": 6436, "atom2_serNum": 10010, "donAcc_type": "standard", "distance": 3.476, "atom1_id": "///A/302/OP2", "atom2_id": "///A/468/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 688, "atom1_serNum": 6444, "atom2_serNum": 6459, "donAcc_type": "acceptable", "distance": 2.814, "atom1_id": "///A/302/O2'", "atom2_id": "///A/303/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 689, "atom1_serNum": 6444, "atom2_serNum": 6462, "donAcc_type": "acceptable", "distance": 2.285, "atom1_id": "///A/302/O2'", "atom2_id": "///A/303/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 690, "atom1_serNum": 6448, "atom2_serNum": 9642, "donAcc_type": "acceptable", "distance": 2.861, "atom1_id": "///A/302/N7", "atom2_id": "///A/451/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 691, "atom1_serNum": 6451, "atom2_serNum": 8896, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///A/302/N6", "atom2_id": "///A/416/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 692, "atom1_serNum": 6452, "atom2_serNum": 8894, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///A/302/N1", "atom2_id": "///A/416/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 693, "atom1_serNum": 6466, "atom2_serNum": 6480, "donAcc_type": "acceptable", "distance": 2.465, "atom1_id": "///A/303/O2'", "atom2_id": "///A/304/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 694, "atom1_serNum": 6473, "atom2_serNum": 8876, "donAcc_type": "standard", "distance": 2.857, "atom1_id": "///A/303/O6", "atom2_id": "///A/415/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 695, "atom1_serNum": 6474, "atom2_serNum": 8874, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///A/303/N1", "atom2_id": "///A/415/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 696, "atom1_serNum": 6476, "atom2_serNum": 8873, "donAcc_type": "standard", "distance": 2.809, "atom1_id": "///A/303/N2", "atom2_id": "///A/415/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 697, "atom1_serNum": 6493, "atom2_serNum": 8794, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///A/304/N7", "atom2_id": "///A/411/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 698, "atom1_serNum": 6496, "atom2_serNum": 8856, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///A/304/O6", "atom2_id": "///A/414/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 699, "atom1_serNum": 6497, "atom2_serNum": 8854, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/304/N1", "atom2_id": "///A/414/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 700, "atom1_serNum": 6499, "atom2_serNum": 8853, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///A/304/N2", "atom2_id": "///A/414/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 701, "atom1_serNum": 6504, "atom2_serNum": 6541, "donAcc_type": "standard", "distance": 2.742, "atom1_id": "///A/305/OP2", "atom2_id": "///A/306/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 702, "atom1_serNum": 6519, "atom2_serNum": 8836, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///A/305/N6", "atom2_id": "///A/413/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 703, "atom1_serNum": 6520, "atom2_serNum": 8834, "donAcc_type": "standard", "distance": 2.826, "atom1_id": "///A/305/N1", "atom2_id": "///A/413/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 704, "atom1_serNum": 6538, "atom2_serNum": 8771, "donAcc_type": "standard", "distance": 2.805, "atom1_id": "///A/306/O2", "atom2_id": "///A/410/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 705, "atom1_serNum": 6538, "atom2_serNum": 8814, "donAcc_type": "standard", "distance": 2.796, "atom1_id": "///A/306/O2", "atom2_id": "///A/412/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 706, "atom1_serNum": 6539, "atom2_serNum": 8769, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///A/306/N3", "atom2_id": "///A/410/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 707, "atom1_serNum": 6541, "atom2_serNum": 8768, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///A/306/N4", "atom2_id": "///A/410/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 708, "atom1_serNum": 6561, "atom2_serNum": 8748, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///A/307/N6", "atom2_id": "///A/409/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 709, "atom1_serNum": 6562, "atom2_serNum": 8746, "donAcc_type": "standard", "distance": 2.757, "atom1_id": "///A/307/N1", "atom2_id": "///A/409/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 710, "atom1_serNum": 6580, "atom2_serNum": 8728, "donAcc_type": "standard", "distance": 2.752, "atom1_id": "///A/308/O2", "atom2_id": "///A/408/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 711, "atom1_serNum": 6581, "atom2_serNum": 8726, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///A/308/N3", "atom2_id": "///A/408/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 712, "atom1_serNum": 6581, "atom2_serNum": 8746, "donAcc_type": "standard", "distance": 3.176, "atom1_id": "///A/308/N3", "atom2_id": "///A/409/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 713, "atom1_serNum": 6583, "atom2_serNum": 8725, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///A/308/N4", "atom2_id": "///A/408/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 714, "atom1_serNum": 6601, "atom2_serNum": 8704, "donAcc_type": "standard", "distance": 2.734, "atom1_id": "///A/309/N3", "atom2_id": "///A/407/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 715, "atom1_serNum": 6603, "atom2_serNum": 8703, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///A/309/O4", "atom2_id": "///A/407/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 716, "atom1_serNum": 6620, "atom2_serNum": 8683, "donAcc_type": "standard", "distance": 2.672, "atom1_id": "///A/310/O2", "atom2_id": "///A/406/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 717, "atom1_serNum": 6621, "atom2_serNum": 8681, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///A/310/N3", "atom2_id": "///A/406/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 718, "atom1_serNum": 6623, "atom2_serNum": 8680, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///A/310/N4", "atom2_id": "///A/406/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 719, "atom1_serNum": 6636, "atom2_serNum": 6649, "donAcc_type": "acceptable", "distance": 2.836, "atom1_id": "///A/311/O2'", "atom2_id": "///A/312/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 720, "atom1_serNum": 6640, "atom2_serNum": 8658, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/311/O2", "atom2_id": "///A/405/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 721, "atom1_serNum": 6641, "atom2_serNum": 8660, "donAcc_type": "standard", "distance": 3.416, "atom1_id": "///A/311/N3", "atom2_id": "///A/405/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 722, "atom1_serNum": 6656, "atom2_serNum": 6672, "donAcc_type": "acceptable", "distance": 2.556, "atom1_id": "///A/312/O2'", "atom2_id": "///A/313/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 723, "atom1_serNum": 6656, "atom2_serNum": 6675, "donAcc_type": "acceptable", "distance": 2.580, "atom1_id": "///A/312/O2'", "atom2_id": "///A/313/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 724, "atom1_serNum": 6699, "atom2_serNum": 6717, "donAcc_type": "acceptable", "distance": 2.664, "atom1_id": "///A/314/O2'", "atom2_id": "///A/315/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 725, "atom1_serNum": 6699, "atom2_serNum": 6745, "donAcc_type": "acceptable", "distance": 2.246, "atom1_id": "///A/314/O2'", "atom2_id": "///A/316/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 726, "atom1_serNum": 6748, "atom2_serNum": 8640, "donAcc_type": "standard", "distance": 2.816, "atom1_id": "///A/316/O6", "atom2_id": "///A/404/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 727, "atom1_serNum": 6749, "atom2_serNum": 8638, "donAcc_type": "standard", "distance": 2.837, "atom1_id": "///A/316/N1", "atom2_id": "///A/404/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 728, "atom1_serNum": 6751, "atom2_serNum": 8637, "donAcc_type": "standard", "distance": 2.703, "atom1_id": "///A/316/N2", "atom2_id": "///A/404/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 729, "atom1_serNum": 6771, "atom2_serNum": 8620, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/317/O6", "atom2_id": "///A/403/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 730, "atom1_serNum": 6772, "atom2_serNum": 8618, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///A/317/N1", "atom2_id": "///A/403/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 731, "atom1_serNum": 6774, "atom2_serNum": 8617, "donAcc_type": "standard", "distance": 2.755, "atom1_id": "///A/317/N2", "atom2_id": "///A/403/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 732, "atom1_serNum": 6787, "atom2_serNum": 6805, "donAcc_type": "acceptable", "distance": 3.011, "atom1_id": "///A/318/O2'", "atom2_id": "///A/319/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 733, "atom1_serNum": 6794, "atom2_serNum": 8600, "donAcc_type": "standard", "distance": 2.988, "atom1_id": "///A/318/N6", "atom2_id": "///A/402/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 734, "atom1_serNum": 6795, "atom2_serNum": 8598, "donAcc_type": "standard", "distance": 2.778, "atom1_id": "///A/318/N1", "atom2_id": "///A/402/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 735, "atom1_serNum": 6807, "atom2_serNum": 6901, "donAcc_type": "standard", "distance": 3.400, "atom1_id": "///A/319/O3'", "atom2_id": "///A/323/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 736, "atom1_serNum": 6809, "atom2_serNum": 6828, "donAcc_type": "acceptable", "distance": 3.206, "atom1_id": "///A/319/O2'", "atom2_id": "///A/320/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 737, "atom1_serNum": 6809, "atom2_serNum": 6965, "donAcc_type": "acceptable", "distance": 2.548, "atom1_id": "///A/319/O2'", "atom2_id": "///A/326/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 738, "atom1_serNum": 6816, "atom2_serNum": 8580, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///A/319/O6", "atom2_id": "///A/401/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 739, "atom1_serNum": 6817, "atom2_serNum": 8578, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///A/319/N1", "atom2_id": "///A/401/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 740, "atom1_serNum": 6819, "atom2_serNum": 6966, "donAcc_type": "standard", "distance": 2.679, "atom1_id": "///A/319/N2", "atom2_id": "///A/326/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 741, "atom1_serNum": 6819, "atom2_serNum": 8577, "donAcc_type": "standard", "distance": 2.785, "atom1_id": "///A/319/N2", "atom2_id": "///A/401/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 742, "atom1_serNum": 6820, "atom2_serNum": 6965, "donAcc_type": "standard", "distance": 3.107, "atom1_id": "///A/319/N3", "atom2_id": "///A/326/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 743, "atom1_serNum": 6839, "atom2_serNum": 6984, "donAcc_type": "questionable", "distance": 3.033, "atom1_id": "///A/320/O4", "atom2_id": "///A/327/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 744, "atom1_serNum": 6852, "atom2_serNum": 6864, "donAcc_type": "acceptable", "distance": 2.577, "atom1_id": "///A/321/O2'", "atom2_id": "///A/322/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 745, "atom1_serNum": 6852, "atom2_serNum": 6901, "donAcc_type": "acceptable", "distance": 3.376, "atom1_id": "///A/321/O2'", "atom2_id": "///A/323/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 746, "atom1_serNum": 6856, "atom2_serNum": 10149, "donAcc_type": "questionable", "distance": 3.053, "atom1_id": "///A/321/O2", "atom2_id": "///A/475/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 747, "atom1_serNum": 6863, "atom2_serNum": 6927, "donAcc_type": "questionable", "distance": 2.902, "atom1_id": "///A/322/OP1", "atom2_id": "///A/325/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 748, "atom1_serNum": 6872, "atom2_serNum": 10113, "donAcc_type": "acceptable", "distance": 3.618, "atom1_id": "///A/322/O2'", "atom2_id": "///A/473/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 749, "atom1_serNum": 6872, "atom2_serNum": 10129, "donAcc_type": "acceptable", "distance": 3.209, "atom1_id": "///A/322/O2'", "atom2_id": "///A/474/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 750, "atom1_serNum": 6886, "atom2_serNum": 6927, "donAcc_type": "questionable", "distance": 2.690, "atom1_id": "///A/323/OP2", "atom2_id": "///A/325/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 751, "atom1_serNum": 6914, "atom2_serNum": 6929, "donAcc_type": "acceptable", "distance": 2.565, "atom1_id": "///A/324/O2'", "atom2_id": "///A/325/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 752, "atom1_serNum": 6921, "atom2_serNum": 8609, "donAcc_type": "standard", "distance": 3.077, "atom1_id": "///A/324/N6", "atom2_id": "///A/403/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 753, "atom1_serNum": 6936, "atom2_serNum": 6949, "donAcc_type": "acceptable", "distance": 2.544, "atom1_id": "///A/325/O2'", "atom2_id": "///A/326/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 754, "atom1_serNum": 6943, "atom2_serNum": 8597, "donAcc_type": "standard", "distance": 3.876, "atom1_id": "///A/325/N6", "atom2_id": "///A/402/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 755, "atom1_serNum": 6944, "atom2_serNum": 8593, "donAcc_type": "acceptable", "distance": 3.296, "atom1_id": "///A/325/N1", "atom2_id": "///A/402/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 756, "atom1_serNum": 6980, "atom2_serNum": 6996, "donAcc_type": "acceptable", "distance": 2.795, "atom1_id": "///A/327/O2'", "atom2_id": "///A/328/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 757, "atom1_serNum": 6987, "atom2_serNum": 8558, "donAcc_type": "standard", "distance": 2.987, "atom1_id": "///A/327/O6", "atom2_id": "///A/400/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 758, "atom1_serNum": 6988, "atom2_serNum": 8557, "donAcc_type": "standard", "distance": 2.380, "atom1_id": "///A/327/N1", "atom2_id": "///A/400/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 759, "atom1_serNum": 6990, "atom2_serNum": 8557, "donAcc_type": "standard", "distance": 2.236, "atom1_id": "///A/327/N2", "atom2_id": "///A/400/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 760, "atom1_serNum": 7010, "atom2_serNum": 8540, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///A/328/O6", "atom2_id": "///A/399/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 761, "atom1_serNum": 7011, "atom2_serNum": 8538, "donAcc_type": "standard", "distance": 2.870, "atom1_id": "///A/328/N1", "atom2_id": "///A/399/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 762, "atom1_serNum": 7013, "atom2_serNum": 8537, "donAcc_type": "standard", "distance": 2.740, "atom1_id": "///A/328/N2", "atom2_id": "///A/399/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 763, "atom1_serNum": 7033, "atom2_serNum": 8520, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///A/329/N6", "atom2_id": "///A/398/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 764, "atom1_serNum": 7034, "atom2_serNum": 8518, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///A/329/N1", "atom2_id": "///A/398/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 765, "atom1_serNum": 7048, "atom2_serNum": 7061, "donAcc_type": "acceptable", "distance": 2.888, "atom1_id": "///A/330/O2'", "atom2_id": "///A/331/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 766, "atom1_serNum": 7055, "atom2_serNum": 8500, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///A/330/N6", "atom2_id": "///A/397/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 767, "atom1_serNum": 7056, "atom2_serNum": 8498, "donAcc_type": "standard", "distance": 2.850, "atom1_id": "///A/330/N1", "atom2_id": "///A/397/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 768, "atom1_serNum": 7074, "atom2_serNum": 8480, "donAcc_type": "standard", "distance": 2.684, "atom1_id": "///A/331/O2", "atom2_id": "///A/396/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 769, "atom1_serNum": 7075, "atom2_serNum": 8478, "donAcc_type": "standard", "distance": 2.839, "atom1_id": "///A/331/N3", "atom2_id": "///A/396/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 770, "atom1_serNum": 7077, "atom2_serNum": 7097, "donAcc_type": "standard", "distance": 3.107, "atom1_id": "///A/331/N4", "atom2_id": "///A/332/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 771, "atom1_serNum": 7077, "atom2_serNum": 8477, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///A/331/N4", "atom2_id": "///A/396/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 772, "atom1_serNum": 7097, "atom2_serNum": 8457, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///A/332/O6", "atom2_id": "///A/395/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 773, "atom1_serNum": 7098, "atom2_serNum": 8455, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///A/332/N1", "atom2_id": "///A/395/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 774, "atom1_serNum": 7100, "atom2_serNum": 8454, "donAcc_type": "standard", "distance": 2.760, "atom1_id": "///A/332/N2", "atom2_id": "///A/395/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 775, "atom1_serNum": 7120, "atom2_serNum": 8437, "donAcc_type": "standard", "distance": 2.962, "atom1_id": "///A/333/N6", "atom2_id": "///A/394/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 776, "atom1_serNum": 7121, "atom2_serNum": 8435, "donAcc_type": "standard", "distance": 2.767, "atom1_id": "///A/333/N1", "atom2_id": "///A/394/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 777, "atom1_serNum": 7142, "atom2_serNum": 8414, "donAcc_type": "questionable", "distance": 2.533, "atom1_id": "///A/334/O6", "atom2_id": "///A/393/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 778, "atom1_serNum": 7142, "atom2_serNum": 8415, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///A/334/O6", "atom2_id": "///A/393/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 779, "atom1_serNum": 7143, "atom2_serNum": 8414, "donAcc_type": "standard", "distance": 2.738, "atom1_id": "///A/334/N1", "atom2_id": "///A/393/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 780, "atom1_serNum": 7165, "atom2_serNum": 8397, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///A/335/O6", "atom2_id": "///A/392/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 781, "atom1_serNum": 7165, "atom2_serNum": 8415, "donAcc_type": "standard", "distance": 3.292, "atom1_id": "///A/335/O6", "atom2_id": "///A/393/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 782, "atom1_serNum": 7166, "atom2_serNum": 8395, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///A/335/N1", "atom2_id": "///A/392/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 783, "atom1_serNum": 7168, "atom2_serNum": 8394, "donAcc_type": "standard", "distance": 2.737, "atom1_id": "///A/335/N2", "atom2_id": "///A/392/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 784, "atom1_serNum": 7186, "atom2_serNum": 8376, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///A/336/N3", "atom2_id": "///A/391/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 785, "atom1_serNum": 7188, "atom2_serNum": 8375, "donAcc_type": "standard", "distance": 3.022, "atom1_id": "///A/336/O4", "atom2_id": "///A/391/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 786, "atom1_serNum": 7201, "atom2_serNum": 7215, "donAcc_type": "acceptable", "distance": 3.130, "atom1_id": "///A/337/O2'", "atom2_id": "///A/338/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 787, "atom1_serNum": 7201, "atom2_serNum": 7216, "donAcc_type": "acceptable", "distance": 2.603, "atom1_id": "///A/337/O2'", "atom2_id": "///A/338/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 788, "atom1_serNum": 7201, "atom2_serNum": 7219, "donAcc_type": "acceptable", "distance": 2.203, "atom1_id": "///A/337/O2'", "atom2_id": "///A/338/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 789, "atom1_serNum": 7230, "atom2_serNum": 8289, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/338/O6", "atom2_id": "///A/387/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 790, "atom1_serNum": 7231, "atom2_serNum": 8287, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/338/N1", "atom2_id": "///A/387/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 791, "atom1_serNum": 7233, "atom2_serNum": 8286, "donAcc_type": "standard", "distance": 2.798, "atom1_id": "///A/338/N2", "atom2_id": "///A/387/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 792, "atom1_serNum": 7253, "atom2_serNum": 8269, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///A/339/N6", "atom2_id": "///A/386/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 793, "atom1_serNum": 7254, "atom2_serNum": 8267, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///A/339/N1", "atom2_id": "///A/386/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 794, "atom1_serNum": 7272, "atom2_serNum": 8247, "donAcc_type": "standard", "distance": 2.797, "atom1_id": "///A/340/O2", "atom2_id": "///A/385/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 795, "atom1_serNum": 7273, "atom2_serNum": 8246, "donAcc_type": "standard", "distance": 2.800, "atom1_id": "///A/340/N3", "atom2_id": "///A/385/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 796, "atom1_serNum": 7288, "atom2_serNum": 7837, "donAcc_type": "acceptable", "distance": 2.765, "atom1_id": "///A/341/O2'", "atom2_id": "///A/366/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 797, "atom1_serNum": 7288, "atom2_serNum": 8224, "donAcc_type": "acceptable", "distance": 2.897, "atom1_id": "///A/341/O2'", "atom2_id": "///A/384/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 798, "atom1_serNum": 7296, "atom2_serNum": 8189, "donAcc_type": "standard", "distance": 2.429, "atom1_id": "///A/341/N1", "atom2_id": "///A/383/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 799, "atom1_serNum": 7298, "atom2_serNum": 8221, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///A/341/N2", "atom2_id": "///A/384/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 800, "atom1_serNum": 7299, "atom2_serNum": 8224, "donAcc_type": "standard", "distance": 3.079, "atom1_id": "///A/341/N3", "atom2_id": "///A/384/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 801, "atom1_serNum": 7302, "atom2_serNum": 73725, "donAcc_type": "standard", "distance": 3.062, "atom1_id": "///A/342/OP1", "atom2_id": "///P/95/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 802, "atom1_serNum": 7311, "atom2_serNum": 7329, "donAcc_type": "acceptable", "distance": 2.451, "atom1_id": "///A/342/O2'", "atom2_id": "///A/343/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 803, "atom1_serNum": 7318, "atom2_serNum": 8181, "donAcc_type": "standard", "distance": 3.024, "atom1_id": "///A/342/N6", "atom2_id": "///A/382/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 804, "atom1_serNum": 7318, "atom2_serNum": 8204, "donAcc_type": "standard", "distance": 3.251, "atom1_id": "///A/342/N6", "atom2_id": "///A/383/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 805, "atom1_serNum": 7319, "atom2_serNum": 7829, "donAcc_type": "acceptable", "distance": 2.641, "atom1_id": "///A/342/N1", "atom2_id": "///A/366/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 806, "atom1_serNum": 7321, "atom2_serNum": 7767, "donAcc_type": "acceptable", "distance": 3.088, "atom1_id": "///A/342/N3", "atom2_id": "///A/363/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 807, "atom1_serNum": 7333, "atom2_serNum": 7747, "donAcc_type": "acceptable", "distance": 2.619, "atom1_id": "///A/343/O2'", "atom2_id": "///A/362/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 808, "atom1_serNum": 7333, "atom2_serNum": 7751, "donAcc_type": "acceptable", "distance": 2.807, "atom1_id": "///A/343/O2'", "atom2_id": "///A/362/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 809, "atom1_serNum": 7333, "atom2_serNum": 8098, "donAcc_type": "acceptable", "distance": 3.445, "atom1_id": "///A/343/O2'", "atom2_id": "///A/378/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 810, "atom1_serNum": 7340, "atom2_serNum": 8181, "donAcc_type": "standard", "distance": 3.926, "atom1_id": "///A/343/N6", "atom2_id": "///A/382/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 811, "atom1_serNum": 7343, "atom2_serNum": 8081, "donAcc_type": "standard", "distance": 3.632, "atom1_id": "///A/343/N3", "atom2_id": "///A/377/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 812, "atom1_serNum": 7355, "atom2_serNum": 7371, "donAcc_type": "acceptable", "distance": 2.990, "atom1_id": "///A/344/O2'", "atom2_id": "///A/345/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 813, "atom1_serNum": 7362, "atom2_serNum": 7711, "donAcc_type": "standard", "distance": 2.838, "atom1_id": "///A/344/O6", "atom2_id": "///A/360/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 814, "atom1_serNum": 7363, "atom2_serNum": 7709, "donAcc_type": "standard", "distance": 2.870, "atom1_id": "///A/344/N1", "atom2_id": "///A/360/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 815, "atom1_serNum": 7365, "atom2_serNum": 7708, "donAcc_type": "standard", "distance": 2.768, "atom1_id": "///A/344/N2", "atom2_id": "///A/360/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 816, "atom1_serNum": 7378, "atom2_serNum": 7393, "donAcc_type": "acceptable", "distance": 2.466, "atom1_id": "///A/345/O2'", "atom2_id": "///A/346/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 817, "atom1_serNum": 7378, "atom2_serNum": 7414, "donAcc_type": "acceptable", "distance": 3.549, "atom1_id": "///A/345/O2'", "atom2_id": "///A/347/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 818, "atom1_serNum": 7407, "atom2_serNum": 7691, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///A/346/O6", "atom2_id": "///A/359/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 819, "atom1_serNum": 7408, "atom2_serNum": 7689, "donAcc_type": "standard", "distance": 2.838, "atom1_id": "///A/346/N1", "atom2_id": "///A/359/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 820, "atom1_serNum": 7410, "atom2_serNum": 7688, "donAcc_type": "standard", "distance": 2.711, "atom1_id": "///A/346/N2", "atom2_id": "///A/359/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 821, "atom1_serNum": 7430, "atom2_serNum": 7671, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///A/347/O6", "atom2_id": "///A/358/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 822, "atom1_serNum": 7431, "atom2_serNum": 7669, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///A/347/N1", "atom2_id": "///A/358/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 823, "atom1_serNum": 7433, "atom2_serNum": 7668, "donAcc_type": "standard", "distance": 2.758, "atom1_id": "///A/347/N2", "atom2_id": "///A/358/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 824, "atom1_serNum": 7450, "atom2_serNum": 7649, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///A/348/O2", "atom2_id": "///A/357/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 825, "atom1_serNum": 7451, "atom2_serNum": 7648, "donAcc_type": "standard", "distance": 2.827, "atom1_id": "///A/348/N3", "atom2_id": "///A/357/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 826, "atom1_serNum": 7466, "atom2_serNum": 7482, "donAcc_type": "acceptable", "distance": 2.968, "atom1_id": "///A/349/O2'", "atom2_id": "///A/350/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 827, "atom1_serNum": 7470, "atom2_serNum": 7628, "donAcc_type": "standard", "distance": 3.055, "atom1_id": "///A/349/O2", "atom2_id": "///A/356/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 828, "atom1_serNum": 7471, "atom2_serNum": 7626, "donAcc_type": "standard", "distance": 2.738, "atom1_id": "///A/349/N3", "atom2_id": "///A/356/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 829, "atom1_serNum": 7473, "atom2_serNum": 7625, "donAcc_type": "standard", "distance": 2.290, "atom1_id": "///A/349/N4", "atom2_id": "///A/356/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 830, "atom1_serNum": 7486, "atom2_serNum": 25193, "donAcc_type": "acceptable", "distance": 2.742, "atom1_id": "///A/350/O2'", "atom2_id": "///A/1251/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 831, "atom1_serNum": 7490, "atom2_serNum": 7581, "donAcc_type": "standard", "distance": 2.779, "atom1_id": "///A/350/O2", "atom2_id": "///A/354/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 832, "atom1_serNum": 7491, "atom2_serNum": 7578, "donAcc_type": "standard", "distance": 3.062, "atom1_id": "///A/350/N3", "atom2_id": "///A/354/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 833, "atom1_serNum": 7493, "atom2_serNum": 7578, "donAcc_type": "questionable", "distance": 2.477, "atom1_id": "///A/350/O4", "atom2_id": "///A/354/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 834, "atom1_serNum": 7506, "atom2_serNum": 7556, "donAcc_type": "acceptable", "distance": 3.426, "atom1_id": "///A/351/O2'", "atom2_id": "///A/353/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 835, "atom1_serNum": 7514, "atom2_serNum": 7566, "donAcc_type": "standard", "distance": 2.818, "atom1_id": "///A/351/N1", "atom2_id": "///A/354/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 836, "atom1_serNum": 7516, "atom2_serNum": 7566, "donAcc_type": "standard", "distance": 2.349, "atom1_id": "///A/351/N2", "atom2_id": "///A/354/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 837, "atom1_serNum": 7516, "atom2_serNum": 7567, "donAcc_type": "standard", "distance": 3.042, "atom1_id": "///A/351/N2", "atom2_id": "///A/354/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 838, "atom1_serNum": 7517, "atom2_serNum": 8014, "donAcc_type": "standard", "distance": 3.110, "atom1_id": "///A/351/N3", "atom2_id": "///A/374/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 839, "atom1_serNum": 7539, "atom2_serNum": 7995, "donAcc_type": "standard", "distance": 3.770, "atom1_id": "///A/352/N2", "atom2_id": "///A/373/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 840, "atom1_serNum": 7552, "atom2_serNum": 7985, "donAcc_type": "acceptable", "distance": 3.186, "atom1_id": "///A/353/O2'", "atom2_id": "///A/373/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 841, "atom1_serNum": 7562, "atom2_serNum": 7985, "donAcc_type": "acceptable", "distance": 2.743, "atom1_id": "///A/353/N3", "atom2_id": "///A/373/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 842, "atom1_serNum": 7565, "atom2_serNum": 73201, "donAcc_type": "standard", "distance": 2.826, "atom1_id": "///A/354/OP1", "atom2_id": "///P/17/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 843, "atom1_serNum": 7566, "atom2_serNum": 73201, "donAcc_type": "standard", "distance": 2.557, "atom1_id": "///A/354/OP2", "atom2_id": "///P/17/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 844, "atom1_serNum": 7574, "atom2_serNum": 7588, "donAcc_type": "acceptable", "distance": 2.578, "atom1_id": "///A/354/O2'", "atom2_id": "///A/355/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 845, "atom1_serNum": 7574, "atom2_serNum": 7622, "donAcc_type": "acceptable", "distance": 3.634, "atom1_id": "///A/354/O2'", "atom2_id": "///A/356/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 846, "atom1_serNum": 7596, "atom2_serNum": 7606, "donAcc_type": "acceptable", "distance": 3.038, "atom1_id": "///A/355/O2'", "atom2_id": "///A/355/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 847, "atom1_serNum": 7596, "atom2_serNum": 8029, "donAcc_type": "acceptable", "distance": 3.159, "atom1_id": "///A/355/O2'", "atom2_id": "///A/375/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 848, "atom1_serNum": 7731, "atom2_serNum": 8101, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///A/361/O6", "atom2_id": "///A/378/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 849, "atom1_serNum": 7732, "atom2_serNum": 8099, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///A/361/N1", "atom2_id": "///A/378/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 850, "atom1_serNum": 7734, "atom2_serNum": 8098, "donAcc_type": "standard", "distance": 2.799, "atom1_id": "///A/361/N2", "atom2_id": "///A/378/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 851, "atom1_serNum": 7751, "atom2_serNum": 8081, "donAcc_type": "standard", "distance": 2.766, "atom1_id": "///A/362/O2", "atom2_id": "///A/377/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 852, "atom1_serNum": 7752, "atom2_serNum": 8079, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///A/362/N3", "atom2_id": "///A/377/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 853, "atom1_serNum": 7754, "atom2_serNum": 8078, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///A/362/N4", "atom2_id": "///A/377/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 854, "atom1_serNum": 7771, "atom2_serNum": 7861, "donAcc_type": "standard", "distance": 2.787, "atom1_id": "///A/363/O2", "atom2_id": "///A/367/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 855, "atom1_serNum": 7772, "atom2_serNum": 7859, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///A/363/N3", "atom2_id": "///A/367/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 856, "atom1_serNum": 7774, "atom2_serNum": 7858, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///A/363/N4", "atom2_id": "///A/367/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 857, "atom1_serNum": 7778, "atom2_serNum": 64216, "donAcc_type": "standard", "distance": 3.098, "atom1_id": "///A/364/OP1", "atom2_id": "///E/135/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 858, "atom1_serNum": 7787, "atom2_serNum": 7821, "donAcc_type": "acceptable", "distance": 2.917, "atom1_id": "///A/364/O2'", "atom2_id": "///A/366/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 859, "atom1_serNum": 7797, "atom2_serNum": 64446, "donAcc_type": "standard", "distance": 2.730, "atom1_id": "///A/364/N3", "atom2_id": "///E/169/ND2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 860, "atom1_serNum": 7801, "atom2_serNum": 64217, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///A/365/OP2", "atom2_id": "///E/136/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 861, "atom1_serNum": 7807, "atom2_serNum": 64438, "donAcc_type": "standard", "distance": 3.219, "atom1_id": "///A/365/O3'", "atom2_id": "///E/168/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 862, "atom1_serNum": 7809, "atom2_serNum": 8217, "donAcc_type": "acceptable", "distance": 2.868, "atom1_id": "///A/365/O2'", "atom2_id": "///A/384/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 863, "atom1_serNum": 7809, "atom2_serNum": 8227, "donAcc_type": "acceptable", "distance": 3.129, "atom1_id": "///A/365/O2'", "atom2_id": "///A/384/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 864, "atom1_serNum": 7820, "atom2_serNum": 64435, "donAcc_type": "standard", "distance": 2.722, "atom1_id": "///A/366/OP1", "atom2_id": "///E/168/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 865, "atom1_serNum": 7820, "atom2_serNum": 64438, "donAcc_type": "standard", "distance": 3.128, "atom1_id": "///A/366/OP1", "atom2_id": "///E/168/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 866, "atom1_serNum": 7825, "atom2_serNum": 8213, "donAcc_type": "questionable", "distance": 3.197, "atom1_id": "///A/366/O4'", "atom2_id": "///A/384/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 867, "atom1_serNum": 7839, "atom2_serNum": 8202, "donAcc_type": "standard", "distance": 3.865, "atom1_id": "///A/366/N3", "atom2_id": "///A/383/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 868, "atom1_serNum": 7842, "atom2_serNum": 8201, "donAcc_type": "questionable", "distance": 2.900, "atom1_id": "///A/367/OP1", "atom2_id": "///A/383/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 869, "atom1_serNum": 7851, "atom2_serNum": 64442, "donAcc_type": "acceptable", "distance": 3.211, "atom1_id": "///A/367/O2'", "atom2_id": "///E/169/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 870, "atom1_serNum": 7878, "atom2_serNum": 8184, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///A/368/N7", "atom2_id": "///A/382/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 871, "atom1_serNum": 7881, "atom2_serNum": 8174, "donAcc_type": "acceptable", "distance": 3.214, "atom1_id": "///A/368/O6", "atom2_id": "///A/382/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 872, "atom1_serNum": 7881, "atom2_serNum": 8185, "donAcc_type": "questionable", "distance": 3.204, "atom1_id": "///A/368/O6", "atom2_id": "///A/382/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 873, "atom1_serNum": 7904, "atom2_serNum": 8161, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///A/369/N6", "atom2_id": "///A/381/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 874, "atom1_serNum": 7905, "atom2_serNum": 8159, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///A/369/N1", "atom2_id": "///A/381/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 875, "atom1_serNum": 7919, "atom2_serNum": 7935, "donAcc_type": "acceptable", "distance": 2.913, "atom1_id": "///A/370/O2'", "atom2_id": "///A/371/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 876, "atom1_serNum": 7926, "atom2_serNum": 8141, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///A/370/O6", "atom2_id": "///A/380/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 877, "atom1_serNum": 7927, "atom2_serNum": 8139, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///A/370/N1", "atom2_id": "///A/380/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 878, "atom1_serNum": 7929, "atom2_serNum": 8138, "donAcc_type": "standard", "distance": 2.733, "atom1_id": "///A/370/N2", "atom2_id": "///A/380/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 879, "atom1_serNum": 7949, "atom2_serNum": 8121, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///A/371/O6", "atom2_id": "///A/379/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 880, "atom1_serNum": 7950, "atom2_serNum": 8119, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///A/371/N1", "atom2_id": "///A/379/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 881, "atom1_serNum": 7952, "atom2_serNum": 8118, "donAcc_type": "standard", "distance": 2.841, "atom1_id": "///A/371/N2", "atom2_id": "///A/379/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 882, "atom1_serNum": 7952, "atom2_serNum": 73513, "donAcc_type": "acceptable", "distance": 2.982, "atom1_id": "///A/371/N2", "atom2_id": "///P/66/OG", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 883, "atom1_serNum": 7965, "atom2_serNum": 7976, "donAcc_type": "acceptable", "distance": 2.917, "atom1_id": "///A/372/O2'", "atom2_id": "///A/373/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 884, "atom1_serNum": 7965, "atom2_serNum": 73520, "donAcc_type": "acceptable", "distance": 2.582, "atom1_id": "///A/372/O2'", "atom2_id": "///P/67/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 885, "atom1_serNum": 7965, "atom2_serNum": 73521, "donAcc_type": "acceptable", "distance": 3.070, "atom1_id": "///A/372/O2'", "atom2_id": "///P/67/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 886, "atom1_serNum": 7969, "atom2_serNum": 8056, "donAcc_type": "standard", "distance": 3.020, "atom1_id": "///A/372/O2", "atom2_id": "///A/376/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 887, "atom1_serNum": 7969, "atom2_serNum": 73513, "donAcc_type": "acceptable", "distance": 3.066, "atom1_id": "///A/372/O2", "atom2_id": "///P/66/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 888, "atom1_serNum": 7970, "atom2_serNum": 8053, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///A/372/N3", "atom2_id": "///A/376/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 889, "atom1_serNum": 7976, "atom2_serNum": 73521, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///A/373/OP1", "atom2_id": "///P/67/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 890, "atom1_serNum": 7981, "atom2_serNum": 11203, "donAcc_type": "questionable", "distance": 3.282, "atom1_id": "///A/373/O4'", "atom2_id": "///A/524/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 891, "atom1_serNum": 7992, "atom2_serNum": 73176, "donAcc_type": "questionable", "distance": 3.251, "atom1_id": "///A/373/N6", "atom2_id": "///P/15/N", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 892, "atom1_serNum": 8015, "atom2_serNum": 25179, "donAcc_type": "acceptable", "distance": 3.209, "atom1_id": "///A/374/N1", "atom2_id": "///A/1250/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 893, "atom1_serNum": 8049, "atom2_serNum": 8086, "donAcc_type": "acceptable", "distance": 2.082, "atom1_id": "///A/376/O2'", "atom2_id": "///A/378/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 894, "atom1_serNum": 8049, "atom2_serNum": 8121, "donAcc_type": "acceptable", "distance": 3.280, "atom1_id": "///A/376/O2'", "atom2_id": "///A/379/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 895, "atom1_serNum": 8085, "atom2_serNum": 8141, "donAcc_type": "standard", "distance": 3.834, "atom1_id": "///A/378/OP1", "atom2_id": "///A/380/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 896, "atom1_serNum": 8094, "atom2_serNum": 8106, "donAcc_type": "acceptable", "distance": 2.796, "atom1_id": "///A/378/O2'", "atom2_id": "///A/379/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 897, "atom1_serNum": 8114, "atom2_serNum": 73511, "donAcc_type": "acceptable", "distance": 3.493, "atom1_id": "///A/379/O2'", "atom2_id": "///P/66/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 898, "atom1_serNum": 8118, "atom2_serNum": 73513, "donAcc_type": "acceptable", "distance": 2.588, "atom1_id": "///A/379/O2", "atom2_id": "///P/66/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 899, "atom1_serNum": 8217, "atom2_serNum": 64438, "donAcc_type": "acceptable", "distance": 2.850, "atom1_id": "///A/384/O2'", "atom2_id": "///E/168/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 900, "atom1_serNum": 8324, "atom2_serNum": 8375, "donAcc_type": "acceptable", "distance": 2.680, "atom1_id": "///A/389/O2'", "atom2_id": "///A/391/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 901, "atom1_serNum": 8334, "atom2_serNum": 8353, "donAcc_type": "standard", "distance": 2.985, "atom1_id": "///A/389/N3", "atom2_id": "///A/390/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 902, "atom1_serNum": 8368, "atom2_serNum": 8383, "donAcc_type": "acceptable", "distance": 2.694, "atom1_id": "///A/391/O2'", "atom2_id": "///A/392/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 903, "atom1_serNum": 8430, "atom2_serNum": 8443, "donAcc_type": "acceptable", "distance": 2.785, "atom1_id": "///A/394/O2'", "atom2_id": "///A/395/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 904, "atom1_serNum": 8593, "atom2_serNum": 8609, "donAcc_type": "acceptable", "distance": 3.241, "atom1_id": "///A/402/O2'", "atom2_id": "///A/403/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 905, "atom1_serNum": 8613, "atom2_serNum": 8626, "donAcc_type": "acceptable", "distance": 2.880, "atom1_id": "///A/403/O2'", "atom2_id": "///A/404/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 906, "atom1_serNum": 8613, "atom2_serNum": 8629, "donAcc_type": "acceptable", "distance": 3.005, "atom1_id": "///A/403/O2'", "atom2_id": "///A/404/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 907, "atom1_serNum": 8761, "atom2_serNum": 8775, "donAcc_type": "acceptable", "distance": 2.657, "atom1_id": "///A/410/O2'", "atom2_id": "///A/411/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 908, "atom1_serNum": 8784, "atom2_serNum": 8836, "donAcc_type": "acceptable", "distance": 2.090, "atom1_id": "///A/411/O2'", "atom2_id": "///A/413/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 909, "atom1_serNum": 8869, "atom2_serNum": 8882, "donAcc_type": "acceptable", "distance": 2.602, "atom1_id": "///A/415/O2'", "atom2_id": "///A/416/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 910, "atom1_serNum": 8869, "atom2_serNum": 8885, "donAcc_type": "acceptable", "distance": 2.964, "atom1_id": "///A/415/O2'", "atom2_id": "///A/416/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 911, "atom1_serNum": 8901, "atom2_serNum": 10052, "donAcc_type": "standard", "distance": 2.418, "atom1_id": "///A/417/OP2", "atom2_id": "///A/470/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 912, "atom1_serNum": 8909, "atom2_serNum": 10058, "donAcc_type": "acceptable", "distance": 2.299, "atom1_id": "///A/417/O2'", "atom2_id": "///A/471/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 913, "atom1_serNum": 8932, "atom2_serNum": 8946, "donAcc_type": "acceptable", "distance": 2.617, "atom1_id": "///A/418/O2'", "atom2_id": "///A/419/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 914, "atom1_serNum": 8939, "atom2_serNum": 9592, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///A/418/N6", "atom2_id": "///A/449/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 915, "atom1_serNum": 8939, "atom2_serNum": 9604, "donAcc_type": "standard", "distance": 3.236, "atom1_id": "///A/418/N6", "atom2_id": "///A/449/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 916, "atom1_serNum": 8940, "atom2_serNum": 9570, "donAcc_type": "questionable", "distance": 3.270, "atom1_id": "///A/418/N1", "atom2_id": "///A/448/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 917, "atom1_serNum": 8954, "atom2_serNum": 9562, "donAcc_type": "acceptable", "distance": 3.145, "atom1_id": "///A/419/O2'", "atom2_id": "///A/447/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 918, "atom1_serNum": 8964, "atom2_serNum": 8984, "donAcc_type": "standard", "distance": 3.889, "atom1_id": "///A/419/N2", "atom2_id": "///A/420/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 919, "atom1_serNum": 8964, "atom2_serNum": 9570, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///A/419/N2", "atom2_id": "///A/448/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 920, "atom1_serNum": 8969, "atom2_serNum": 9563, "donAcc_type": "standard", "distance": 3.077, "atom1_id": "///A/420/OP2", "atom2_id": "///A/447/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 921, "atom1_serNum": 8969, "atom2_serNum": 9565, "donAcc_type": "standard", "distance": 3.110, "atom1_id": "///A/420/OP2", "atom2_id": "///A/447/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 922, "atom1_serNum": 8977, "atom2_serNum": 8990, "donAcc_type": "acceptable", "distance": 2.680, "atom1_id": "///A/420/O2'", "atom2_id": "///A/421/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 923, "atom1_serNum": 8977, "atom2_serNum": 10055, "donAcc_type": "acceptable", "distance": 3.376, "atom1_id": "///A/420/O2'", "atom2_id": "///A/470/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 924, "atom1_serNum": 8981, "atom2_serNum": 9585, "donAcc_type": "standard", "distance": 3.174, "atom1_id": "///A/420/O2", "atom2_id": "///A/448/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 925, "atom1_serNum": 8981, "atom2_serNum": 9607, "donAcc_type": "standard", "distance": 3.393, "atom1_id": "///A/420/O2", "atom2_id": "///A/449/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 926, "atom1_serNum": 8982, "atom2_serNum": 9582, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///A/420/N3", "atom2_id": "///A/448/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 927, "atom1_serNum": 9001, "atom2_serNum": 9565, "donAcc_type": "standard", "distance": 2.731, "atom1_id": "///A/421/N7", "atom2_id": "///A/447/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 928, "atom1_serNum": 9004, "atom2_serNum": 9555, "donAcc_type": "acceptable", "distance": 2.901, "atom1_id": "///A/421/N6", "atom2_id": "///A/447/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 929, "atom1_serNum": 9004, "atom2_serNum": 9566, "donAcc_type": "standard", "distance": 3.023, "atom1_id": "///A/421/N6", "atom2_id": "///A/447/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 930, "atom1_serNum": 9023, "atom2_serNum": 9542, "donAcc_type": "standard", "distance": 2.717, "atom1_id": "///A/422/O2", "atom2_id": "///A/446/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 931, "atom1_serNum": 9024, "atom2_serNum": 9540, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///A/422/N3", "atom2_id": "///A/446/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 932, "atom1_serNum": 9026, "atom2_serNum": 9539, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///A/422/N4", "atom2_id": "///A/446/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 933, "atom1_serNum": 9046, "atom2_serNum": 9519, "donAcc_type": "standard", "distance": 2.840, "atom1_id": "///A/423/O6", "atom2_id": "///A/445/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 934, "atom1_serNum": 9047, "atom2_serNum": 9517, "donAcc_type": "standard", "distance": 2.847, "atom1_id": "///A/423/N1", "atom2_id": "///A/445/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 935, "atom1_serNum": 9049, "atom2_serNum": 9516, "donAcc_type": "standard", "distance": 2.745, "atom1_id": "///A/423/N2", "atom2_id": "///A/445/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 936, "atom1_serNum": 9069, "atom2_serNum": 9497, "donAcc_type": "standard", "distance": 2.774, "atom1_id": "///A/424/O6", "atom2_id": "///A/444/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 937, "atom1_serNum": 9070, "atom2_serNum": 9496, "donAcc_type": "standard", "distance": 3.028, "atom1_id": "///A/424/N1", "atom2_id": "///A/444/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 938, "atom1_serNum": 9085, "atom2_serNum": 9097, "donAcc_type": "acceptable", "distance": 3.191, "atom1_id": "///A/425/O2'", "atom2_id": "///A/426/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 939, "atom1_serNum": 9085, "atom2_serNum": 9098, "donAcc_type": "acceptable", "distance": 2.365, "atom1_id": "///A/425/O2'", "atom2_id": "///A/426/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 940, "atom1_serNum": 9089, "atom2_serNum": 9479, "donAcc_type": "standard", "distance": 2.710, "atom1_id": "///A/425/O2", "atom2_id": "///A/443/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 941, "atom1_serNum": 9090, "atom2_serNum": 9477, "donAcc_type": "standard", "distance": 2.816, "atom1_id": "///A/425/N3", "atom2_id": "///A/443/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 942, "atom1_serNum": 9092, "atom2_serNum": 9476, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/425/N4", "atom2_id": "///A/443/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 943, "atom1_serNum": 9105, "atom2_serNum": 9121, "donAcc_type": "acceptable", "distance": 2.555, "atom1_id": "///A/426/O2'", "atom2_id": "///A/427/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 944, "atom1_serNum": 9105, "atom2_serNum": 9124, "donAcc_type": "acceptable", "distance": 2.487, "atom1_id": "///A/426/O2'", "atom2_id": "///A/427/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 945, "atom1_serNum": 9112, "atom2_serNum": 9456, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///A/426/O6", "atom2_id": "///A/442/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 946, "atom1_serNum": 9113, "atom2_serNum": 9454, "donAcc_type": "standard", "distance": 2.856, "atom1_id": "///A/426/N1", "atom2_id": "///A/442/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 947, "atom1_serNum": 9115, "atom2_serNum": 9453, "donAcc_type": "standard", "distance": 2.688, "atom1_id": "///A/426/N2", "atom2_id": "///A/442/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 948, "atom1_serNum": 9128, "atom2_serNum": 9142, "donAcc_type": "acceptable", "distance": 3.107, "atom1_id": "///A/427/O2'", "atom2_id": "///A/428/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 949, "atom1_serNum": 9135, "atom2_serNum": 9436, "donAcc_type": "standard", "distance": 2.809, "atom1_id": "///A/427/O6", "atom2_id": "///A/441/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 950, "atom1_serNum": 9136, "atom2_serNum": 9434, "donAcc_type": "standard", "distance": 2.841, "atom1_id": "///A/427/N1", "atom2_id": "///A/441/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 951, "atom1_serNum": 9138, "atom2_serNum": 9433, "donAcc_type": "standard", "distance": 2.758, "atom1_id": "///A/427/N2", "atom2_id": "///A/441/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 952, "atom1_serNum": 9158, "atom2_serNum": 9287, "donAcc_type": "standard", "distance": 3.299, "atom1_id": "///A/428/N6", "atom2_id": "///A/434/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 953, "atom1_serNum": 9158, "atom2_serNum": 9416, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///A/428/N6", "atom2_id": "///A/440/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 954, "atom1_serNum": 9159, "atom2_serNum": 9414, "donAcc_type": "standard", "distance": 2.738, "atom1_id": "///A/428/N1", "atom2_id": "///A/440/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 955, "atom1_serNum": 9180, "atom2_serNum": 9287, "donAcc_type": "standard", "distance": 2.483, "atom1_id": "///A/429/N6", "atom2_id": "///A/434/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 956, "atom1_serNum": 9180, "atom2_serNum": 9396, "donAcc_type": "standard", "distance": 2.972, "atom1_id": "///A/429/N6", "atom2_id": "///A/439/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 957, "atom1_serNum": 9181, "atom2_serNum": 9394, "donAcc_type": "standard", "distance": 2.988, "atom1_id": "///A/429/N1", "atom2_id": "///A/439/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 958, "atom1_serNum": 9187, "atom2_serNum": 9229, "donAcc_type": "questionable", "distance": 3.068, "atom1_id": "///A/430/OP2", "atom2_id": "///A/432/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 959, "atom1_serNum": 9199, "atom2_serNum": 9374, "donAcc_type": "standard", "distance": 3.140, "atom1_id": "///A/430/O2", "atom2_id": "///A/438/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 960, "atom1_serNum": 9199, "atom2_serNum": 9393, "donAcc_type": "questionable", "distance": 2.622, "atom1_id": "///A/430/O2", "atom2_id": "///A/439/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 961, "atom1_serNum": 9202, "atom2_serNum": 9249, "donAcc_type": "standard", "distance": 2.591, "atom1_id": "///A/430/N4", "atom2_id": "///A/433/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 962, "atom1_serNum": 9202, "atom2_serNum": 9307, "donAcc_type": "standard", "distance": 3.583, "atom1_id": "///A/430/N4", "atom2_id": "///A/435/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 963, "atom1_serNum": 9202, "atom2_serNum": 9353, "donAcc_type": "standard", "distance": 3.962, "atom1_id": "///A/430/N4", "atom2_id": "///A/437/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 964, "atom1_serNum": 9235, "atom2_serNum": 9310, "donAcc_type": "standard", "distance": 3.145, "atom1_id": "///A/432/O3'", "atom2_id": "///A/435/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 965, "atom1_serNum": 9237, "atom2_serNum": 9310, "donAcc_type": "acceptable", "distance": 2.377, "atom1_id": "///A/432/O2'", "atom2_id": "///A/435/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 966, "atom1_serNum": 9237, "atom2_serNum": 9352, "donAcc_type": "acceptable", "distance": 3.739, "atom1_id": "///A/432/O2'", "atom2_id": "///A/437/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 967, "atom1_serNum": 9249, "atom2_serNum": 9308, "donAcc_type": "standard", "distance": 2.838, "atom1_id": "///A/433/OP2", "atom2_id": "///A/435/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 968, "atom1_serNum": 9300, "atom2_serNum": 9327, "donAcc_type": "acceptable", "distance": 3.010, "atom1_id": "///A/435/O2'", "atom2_id": "///A/436/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 969, "atom1_serNum": 9449, "atom2_serNum": 9465, "donAcc_type": "acceptable", "distance": 3.284, "atom1_id": "///A/442/O2'", "atom2_id": "///A/443/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 970, "atom1_serNum": 9600, "atom2_serNum": 9618, "donAcc_type": "acceptable", "distance": 2.350, "atom1_id": "///A/449/O2'", "atom2_id": "///A/450/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 971, "atom1_serNum": 9618, "atom2_serNum": 9682, "donAcc_type": "acceptable", "distance": 3.325, "atom1_id": "///A/450/O4'", "atom2_id": "///A/453/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 972, "atom1_serNum": 9626, "atom2_serNum": 9682, "donAcc_type": "acceptable", "distance": 3.361, "atom1_id": "///A/450/O2", "atom2_id": "///A/453/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 973, "atom1_serNum": 9638, "atom2_serNum": 9678, "donAcc_type": "questionable", "distance": 3.172, "atom1_id": "///A/451/O4'", "atom2_id": "///A/453/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 974, "atom1_serNum": 9642, "atom2_serNum": 9646, "donAcc_type": "acceptable", "distance": 3.026, "atom1_id": "///A/451/O2'", "atom2_id": "///A/451/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 975, "atom1_serNum": 9689, "atom2_serNum": 10010, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///A/453/O6", "atom2_id": "///A/468/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 976, "atom1_serNum": 9690, "atom2_serNum": 10008, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///A/453/N1", "atom2_id": "///A/468/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 977, "atom1_serNum": 9692, "atom2_serNum": 10007, "donAcc_type": "standard", "distance": 2.785, "atom1_id": "///A/453/N2", "atom2_id": "///A/468/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 978, "atom1_serNum": 9705, "atom2_serNum": 9724, "donAcc_type": "acceptable", "distance": 3.296, "atom1_id": "///A/454/O2'", "atom2_id": "///A/455/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 979, "atom1_serNum": 9712, "atom2_serNum": 9990, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///A/454/O6", "atom2_id": "///A/467/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 980, "atom1_serNum": 9713, "atom2_serNum": 9988, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///A/454/N1", "atom2_id": "///A/467/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 981, "atom1_serNum": 9715, "atom2_serNum": 9987, "donAcc_type": "standard", "distance": 2.713, "atom1_id": "///A/454/N2", "atom2_id": "///A/467/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 982, "atom1_serNum": 9728, "atom2_serNum": 9747, "donAcc_type": "acceptable", "distance": 2.963, "atom1_id": "///A/455/O2'", "atom2_id": "///A/456/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 983, "atom1_serNum": 9735, "atom2_serNum": 9970, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///A/455/O6", "atom2_id": "///A/466/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 984, "atom1_serNum": 9736, "atom2_serNum": 9968, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///A/455/N1", "atom2_id": "///A/466/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 985, "atom1_serNum": 9738, "atom2_serNum": 9967, "donAcc_type": "standard", "distance": 2.785, "atom1_id": "///A/455/N2", "atom2_id": "///A/466/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 986, "atom1_serNum": 9758, "atom2_serNum": 9950, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///A/456/N6", "atom2_id": "///A/465/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 987, "atom1_serNum": 9759, "atom2_serNum": 9948, "donAcc_type": "standard", "distance": 2.784, "atom1_id": "///A/456/N1", "atom2_id": "///A/465/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 988, "atom1_serNum": 9773, "atom2_serNum": 48118, "donAcc_type": "acceptable", "distance": 3.180, "atom1_id": "///A/457/O2'", "atom2_id": "///A/2436/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 989, "atom1_serNum": 9780, "atom2_serNum": 9930, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///A/457/O6", "atom2_id": "///A/464/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 990, "atom1_serNum": 9781, "atom2_serNum": 9928, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///A/457/N1", "atom2_id": "///A/464/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 991, "atom1_serNum": 9783, "atom2_serNum": 9927, "donAcc_type": "standard", "distance": 2.776, "atom1_id": "///A/457/N2", "atom2_id": "///A/464/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 992, "atom1_serNum": 9787, "atom2_serNum": 48118, "donAcc_type": "questionable", "distance": 3.049, "atom1_id": "///A/458/OP1", "atom2_id": "///A/2436/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 993, "atom1_serNum": 9788, "atom2_serNum": 48104, "donAcc_type": "questionable", "distance": 2.675, "atom1_id": "///A/458/OP2", "atom2_id": "///A/2435/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 994, "atom1_serNum": 9826, "atom2_serNum": 48232, "donAcc_type": "standard", "distance": 3.423, "atom1_id": "///A/459/N6", "atom2_id": "///A/2441/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 995, "atom1_serNum": 9846, "atom2_serNum": 48201, "donAcc_type": "standard", "distance": 2.852, "atom1_id": "///A/460/N3", "atom2_id": "///A/2439/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 996, "atom1_serNum": 9848, "atom2_serNum": 48199, "donAcc_type": "questionable", "distance": 2.955, "atom1_id": "///A/460/N4", "atom2_id": "///A/2439/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 997, "atom1_serNum": 9868, "atom2_serNum": 48175, "donAcc_type": "standard", "distance": 3.144, "atom1_id": "///A/461/N4", "atom2_id": "///A/2438/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 998, "atom1_serNum": 9903, "atom2_serNum": 9914, "donAcc_type": "acceptable", "distance": 2.225, "atom1_id": "///A/463/O2'", "atom2_id": "///A/464/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 999, "atom1_serNum": 9907, "atom2_serNum": 48152, "donAcc_type": "questionable", "distance": 2.847, "atom1_id": "///A/463/O2", "atom2_id": "///A/2437/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1000, "atom1_serNum": 9908, "atom2_serNum": 48134, "donAcc_type": "standard", "distance": 2.967, "atom1_id": "///A/463/N3", "atom2_id": "///A/2436/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1001, "atom1_serNum": 9908, "atom2_serNum": 48155, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/463/N3", "atom2_id": "///A/2437/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1002, "atom1_serNum": 9910, "atom2_serNum": 48133, "donAcc_type": "standard", "distance": 2.798, "atom1_id": "///A/463/O4", "atom2_id": "///A/2436/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1003, "atom1_serNum": 9943, "atom2_serNum": 9959, "donAcc_type": "acceptable", "distance": 3.043, "atom1_id": "///A/465/O2'", "atom2_id": "///A/466/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1004, "atom1_serNum": 9963, "atom2_serNum": 9976, "donAcc_type": "acceptable", "distance": 2.895, "atom1_id": "///A/466/O2'", "atom2_id": "///A/467/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1005, "atom1_serNum": 10090, "atom2_serNum": 10109, "donAcc_type": "acceptable", "distance": 3.024, "atom1_id": "///A/472/O2'", "atom2_id": "///A/473/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1006, "atom1_serNum": 10133, "atom2_serNum": 10157, "donAcc_type": "acceptable", "distance": 3.313, "atom1_id": "///A/474/O2'", "atom2_id": "///A/475/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1007, "atom1_serNum": 10175, "atom2_serNum": 10193, "donAcc_type": "acceptable", "distance": 2.958, "atom1_id": "///A/476/O2'", "atom2_id": "///A/477/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1008, "atom1_serNum": 10281, "atom2_serNum": 10285, "donAcc_type": "acceptable", "distance": 3.164, "atom1_id": "///A/481/O2'", "atom2_id": "///A/481/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1009, "atom1_serNum": 10281, "atom2_serNum": 10328, "donAcc_type": "acceptable", "distance": 3.161, "atom1_id": "///A/481/O2'", "atom2_id": "///A/483/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1010, "atom1_serNum": 10285, "atom2_serNum": 10306, "donAcc_type": "questionable", "distance": 3.373, "atom1_id": "///A/481/O2", "atom2_id": "///A/482/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1011, "atom1_serNum": 10426, "atom2_serNum": 10439, "donAcc_type": "acceptable", "distance": 2.767, "atom1_id": "///A/488/O2'", "atom2_id": "///A/489/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1012, "atom1_serNum": 10426, "atom2_serNum": 63560, "donAcc_type": "acceptable", "distance": 2.823, "atom1_id": "///A/488/O2'", "atom2_id": "///E/46/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1013, "atom1_serNum": 10430, "atom2_serNum": 63561, "donAcc_type": "standard", "distance": 3.046, "atom1_id": "///A/488/O2", "atom2_id": "///E/46/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1014, "atom1_serNum": 10446, "atom2_serNum": 10487, "donAcc_type": "acceptable", "distance": 3.557, "atom1_id": "///A/489/O2'", "atom2_id": "///A/491/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1015, "atom1_serNum": 10456, "atom2_serNum": 63569, "donAcc_type": "standard", "distance": 3.626, "atom1_id": "///A/489/N2", "atom2_id": "///E/48/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1016, "atom1_serNum": 10460, "atom2_serNum": 63553, "donAcc_type": "standard", "distance": 2.618, "atom1_id": "///A/490/OP1", "atom2_id": "///E/46/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1017, "atom1_serNum": 10469, "atom2_serNum": 24986, "donAcc_type": "acceptable", "distance": 3.077, "atom1_id": "///A/490/O2'", "atom2_id": "///A/1241/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1018, "atom1_serNum": 10477, "atom2_serNum": 25939, "donAcc_type": "acceptable", "distance": 3.142, "atom1_id": "///A/490/N1", "atom2_id": "///A/1285/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1019, "atom1_serNum": 10479, "atom2_serNum": 25949, "donAcc_type": "standard", "distance": 3.216, "atom1_id": "///A/490/N3", "atom2_id": "///A/1285/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1020, "atom1_serNum": 10502, "atom2_serNum": 69863, "donAcc_type": "standard", "distance": 2.989, "atom1_id": "///A/492/OP1", "atom2_id": "///L/3/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1021, "atom1_serNum": 10511, "atom2_serNum": 10596, "donAcc_type": "acceptable", "distance": 3.186, "atom1_id": "///A/492/O2'", "atom2_id": "///A/496/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1022, "atom1_serNum": 10511, "atom2_serNum": 10606, "donAcc_type": "acceptable", "distance": 2.862, "atom1_id": "///A/492/O2'", "atom2_id": "///A/496/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1023, "atom1_serNum": 10522, "atom2_serNum": 69870, "donAcc_type": "standard", "distance": 3.510, "atom1_id": "///A/493/OP1", "atom2_id": "///L/3/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1024, "atom1_serNum": 10541, "atom2_serNum": 10714, "donAcc_type": "standard", "distance": 3.281, "atom1_id": "///A/493/N2", "atom2_id": "///A/501/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1025, "atom1_serNum": 10542, "atom2_serNum": 10713, "donAcc_type": "standard", "distance": 3.443, "atom1_id": "///A/493/N3", "atom2_id": "///A/501/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1026, "atom1_serNum": 10554, "atom2_serNum": 11122, "donAcc_type": "acceptable", "distance": 3.108, "atom1_id": "///A/494/O2'", "atom2_id": "///A/520/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1027, "atom1_serNum": 10562, "atom2_serNum": 10706, "donAcc_type": "acceptable", "distance": 2.963, "atom1_id": "///A/494/N1", "atom2_id": "///A/501/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1028, "atom1_serNum": 10572, "atom2_serNum": 63836, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///A/495/O4'", "atom2_id": "///E/84/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1029, "atom1_serNum": 10572, "atom2_serNum": 63839, "donAcc_type": "standard", "distance": 2.744, "atom1_id": "///A/495/O4'", "atom2_id": "///E/84/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1030, "atom1_serNum": 10580, "atom2_serNum": 13433, "donAcc_type": "standard", "distance": 3.604, "atom1_id": "///A/495/O2", "atom2_id": "///A/627/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1031, "atom1_serNum": 10583, "atom2_serNum": 13410, "donAcc_type": "standard", "distance": 3.242, "atom1_id": "///A/495/O4", "atom2_id": "///A/626/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1032, "atom1_serNum": 10587, "atom2_serNum": 63832, "donAcc_type": "questionable", "distance": 2.830, "atom1_id": "///A/496/OP1", "atom2_id": "///E/84/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1033, "atom1_serNum": 10594, "atom2_serNum": 26016, "donAcc_type": "standard", "distance": 3.919, "atom1_id": "///A/496/O3'", "atom2_id": "///A/1288/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1034, "atom1_serNum": 10603, "atom2_serNum": 10710, "donAcc_type": "standard", "distance": 3.301, "atom1_id": "///A/496/N6", "atom2_id": "///A/501/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1035, "atom1_serNum": 10609, "atom2_serNum": 26014, "donAcc_type": "standard", "distance": 3.698, "atom1_id": "///A/497/OP1", "atom2_id": "///A/1288/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1036, "atom1_serNum": 10626, "atom2_serNum": 10698, "donAcc_type": "standard", "distance": 2.748, "atom1_id": "///A/497/N1", "atom2_id": "///A/501/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1037, "atom1_serNum": 10645, "atom2_serNum": 10691, "donAcc_type": "standard", "distance": 2.576, "atom1_id": "///A/498/O2", "atom2_id": "///A/500/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1038, "atom1_serNum": 10661, "atom2_serNum": 10680, "donAcc_type": "acceptable", "distance": 3.130, "atom1_id": "///A/499/O2'", "atom2_id": "///A/500/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1039, "atom1_serNum": 10661, "atom2_serNum": 10776, "donAcc_type": "acceptable", "distance": 3.284, "atom1_id": "///A/499/O2'", "atom2_id": "///A/504/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1040, "atom1_serNum": 10671, "atom2_serNum": 10778, "donAcc_type": "standard", "distance": 3.415, "atom1_id": "///A/499/N2", "atom2_id": "///A/504/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1041, "atom1_serNum": 10671, "atom2_serNum": 10786, "donAcc_type": "standard", "distance": 3.044, "atom1_id": "///A/499/N2", "atom2_id": "///A/505/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1042, "atom1_serNum": 10694, "atom2_serNum": 10768, "donAcc_type": "acceptable", "distance": 2.819, "atom1_id": "///A/500/N3", "atom2_id": "///A/504/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1043, "atom1_serNum": 10768, "atom2_serNum": 10778, "donAcc_type": "acceptable", "distance": 3.107, "atom1_id": "///A/504/O2'", "atom2_id": "///A/504/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1044, "atom1_serNum": 10772, "atom2_serNum": 11081, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///A/504/N7", "atom2_id": "///A/518/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1045, "atom1_serNum": 10775, "atom2_serNum": 11078, "donAcc_type": "standard", "distance": 2.814, "atom1_id": "///A/504/N6", "atom2_id": "///A/518/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1046, "atom1_serNum": 10790, "atom2_serNum": 10805, "donAcc_type": "acceptable", "distance": 3.020, "atom1_id": "///A/505/O2'", "atom2_id": "///A/506/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1047, "atom1_serNum": 10790, "atom2_serNum": 11036, "donAcc_type": "acceptable", "distance": 2.067, "atom1_id": "///A/505/O2'", "atom2_id": "///A/516/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1048, "atom1_serNum": 10790, "atom2_serNum": 11037, "donAcc_type": "acceptable", "distance": 3.230, "atom1_id": "///A/505/O2'", "atom2_id": "///A/516/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1049, "atom1_serNum": 10797, "atom2_serNum": 63656, "donAcc_type": "standard", "distance": 2.847, "atom1_id": "///A/505/O6", "atom2_id": "///E/58/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1050, "atom1_serNum": 10800, "atom2_serNum": 10820, "donAcc_type": "standard", "distance": 3.816, "atom1_id": "///A/505/N2", "atom2_id": "///A/506/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1051, "atom1_serNum": 10800, "atom2_serNum": 11044, "donAcc_type": "standard", "distance": 3.124, "atom1_id": "///A/505/N2", "atom2_id": "///A/517/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1052, "atom1_serNum": 10804, "atom2_serNum": 75849, "donAcc_type": "standard", "distance": 3.169, "atom1_id": "///A/506/OP1", "atom2_id": "///U/40/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1053, "atom1_serNum": 10805, "atom2_serNum": 11037, "donAcc_type": "standard", "distance": 3.156, "atom1_id": "///A/506/OP2", "atom2_id": "///A/516/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1054, "atom1_serNum": 10805, "atom2_serNum": 75848, "donAcc_type": "standard", "distance": 3.920, "atom1_id": "///A/506/OP2", "atom2_id": "///U/39/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1055, "atom1_serNum": 10817, "atom2_serNum": 11059, "donAcc_type": "standard", "distance": 3.005, "atom1_id": "///A/506/O2", "atom2_id": "///A/517/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1056, "atom1_serNum": 10818, "atom2_serNum": 11056, "donAcc_type": "standard", "distance": 2.802, "atom1_id": "///A/506/N3", "atom2_id": "///A/517/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1057, "atom1_serNum": 10837, "atom2_serNum": 11039, "donAcc_type": "standard", "distance": 2.705, "atom1_id": "///A/507/N7", "atom2_id": "///A/516/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1058, "atom1_serNum": 10840, "atom2_serNum": 11040, "donAcc_type": "standard", "distance": 3.001, "atom1_id": "///A/507/N6", "atom2_id": "///A/516/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1059, "atom1_serNum": 10859, "atom2_serNum": 11016, "donAcc_type": "standard", "distance": 2.776, "atom1_id": "///A/508/O2", "atom2_id": "///A/515/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1060, "atom1_serNum": 10860, "atom2_serNum": 11014, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/508/N3", "atom2_id": "///A/515/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1061, "atom1_serNum": 10862, "atom2_serNum": 11013, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///A/508/N4", "atom2_id": "///A/515/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1062, "atom1_serNum": 10879, "atom2_serNum": 10993, "donAcc_type": "standard", "distance": 2.752, "atom1_id": "///A/509/O2", "atom2_id": "///A/514/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1063, "atom1_serNum": 10880, "atom2_serNum": 10991, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///A/509/N3", "atom2_id": "///A/514/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1064, "atom1_serNum": 10882, "atom2_serNum": 10990, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///A/509/N4", "atom2_id": "///A/514/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1065, "atom1_serNum": 10895, "atom2_serNum": 10945, "donAcc_type": "acceptable", "distance": 3.242, "atom1_id": "///A/510/O2'", "atom2_id": "///A/512/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1066, "atom1_serNum": 10903, "atom2_serNum": 10953, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///A/510/N1", "atom2_id": "///A/513/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1067, "atom1_serNum": 10905, "atom2_serNum": 10953, "donAcc_type": "standard", "distance": 2.544, "atom1_id": "///A/510/N2", "atom2_id": "///A/513/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1068, "atom1_serNum": 10905, "atom2_serNum": 10965, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///A/510/N2", "atom2_id": "///A/513/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1069, "atom1_serNum": 10918, "atom2_serNum": 75628, "donAcc_type": "acceptable", "distance": 3.003, "atom1_id": "///A/511/O2'", "atom2_id": "///U/12/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1070, "atom1_serNum": 10923, "atom2_serNum": 15669, "donAcc_type": "acceptable", "distance": 3.343, "atom1_id": "///A/511/N3", "atom2_id": "///A/731/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1071, "atom1_serNum": 10929, "atom2_serNum": 75629, "donAcc_type": "standard", "distance": 2.613, "atom1_id": "///A/512/OP1", "atom2_id": "///U/12/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1072, "atom1_serNum": 10938, "atom2_serNum": 10957, "donAcc_type": "acceptable", "distance": 2.592, "atom1_id": "///A/512/O2'", "atom2_id": "///A/513/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1073, "atom1_serNum": 10938, "atom2_serNum": 75704, "donAcc_type": "acceptable", "distance": 3.768, "atom1_id": "///A/512/O2'", "atom2_id": "///U/21/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1074, "atom1_serNum": 10948, "atom2_serNum": 15653, "donAcc_type": "standard", "distance": 3.076, "atom1_id": "///A/512/N2", "atom2_id": "///A/730/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1075, "atom1_serNum": 10949, "atom2_serNum": 15649, "donAcc_type": "acceptable", "distance": 3.264, "atom1_id": "///A/512/N3", "atom2_id": "///A/730/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1076, "atom1_serNum": 10959, "atom2_serNum": 75791, "donAcc_type": "standard", "distance": 3.613, "atom1_id": "///A/513/O3'", "atom2_id": "///U/33/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1077, "atom1_serNum": 10969, "atom2_serNum": 18065, "donAcc_type": "acceptable", "distance": 3.046, "atom1_id": "///A/513/N1", "atom2_id": "///A/842/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1078, "atom1_serNum": 10974, "atom2_serNum": 75788, "donAcc_type": "standard", "distance": 2.968, "atom1_id": "///A/514/OP1", "atom2_id": "///U/33/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1079, "atom1_serNum": 10975, "atom2_serNum": 75801, "donAcc_type": "standard", "distance": 3.187, "atom1_id": "///A/514/OP2", "atom2_id": "///U/34/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1080, "atom1_serNum": 10983, "atom2_serNum": 18083, "donAcc_type": "acceptable", "distance": 3.410, "atom1_id": "///A/514/O2'", "atom2_id": "///A/843/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1081, "atom1_serNum": 11010, "atom2_serNum": 75848, "donAcc_type": "standard", "distance": 3.361, "atom1_id": "///A/515/N7", "atom2_id": "///U/39/NH2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1082, "atom1_serNum": 11013, "atom2_serNum": 75848, "donAcc_type": "standard", "distance": 2.541, "atom1_id": "///A/515/O6", "atom2_id": "///U/39/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1083, "atom1_serNum": 11029, "atom2_serNum": 11048, "donAcc_type": "acceptable", "distance": 3.008, "atom1_id": "///A/516/O2'", "atom2_id": "///A/517/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1084, "atom1_serNum": 11036, "atom2_serNum": 75833, "donAcc_type": "standard", "distance": 3.643, "atom1_id": "///A/516/O6", "atom2_id": "///U/37/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1085, "atom1_serNum": 11043, "atom2_serNum": 63792, "donAcc_type": "standard", "distance": 3.180, "atom1_id": "///A/517/OP1", "atom2_id": "///E/79/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1086, "atom1_serNum": 11065, "atom2_serNum": 63838, "donAcc_type": "standard", "distance": 3.239, "atom1_id": "///A/518/OP1", "atom2_id": "///E/84/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1087, "atom1_serNum": 11088, "atom2_serNum": 63839, "donAcc_type": "standard", "distance": 3.932, "atom1_id": "///A/519/OP2", "atom2_id": "///E/84/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1088, "atom1_serNum": 11160, "atom2_serNum": 11886, "donAcc_type": "acceptable", "distance": 3.285, "atom1_id": "///A/522/O4'", "atom2_id": "///A/555/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1089, "atom1_serNum": 11164, "atom2_serNum": 11799, "donAcc_type": "acceptable", "distance": 3.447, "atom1_id": "///A/522/O2'", "atom2_id": "///A/551/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1090, "atom1_serNum": 11168, "atom2_serNum": 11258, "donAcc_type": "standard", "distance": 2.741, "atom1_id": "///A/522/O2", "atom2_id": "///A/526/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1091, "atom1_serNum": 11169, "atom2_serNum": 11255, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///A/522/N3", "atom2_id": "///A/526/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1092, "atom1_serNum": 11182, "atom2_serNum": 11717, "donAcc_type": "standard", "distance": 3.450, "atom1_id": "///A/523/O3'", "atom2_id": "///A/547/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1093, "atom1_serNum": 11184, "atom2_serNum": 11739, "donAcc_type": "acceptable", "distance": 2.801, "atom1_id": "///A/523/O2'", "atom2_id": "///A/548/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1094, "atom1_serNum": 11194, "atom2_serNum": 11229, "donAcc_type": "acceptable", "distance": 2.535, "atom1_id": "///A/523/N2", "atom2_id": "///A/525/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1095, "atom1_serNum": 11194, "atom2_serNum": 11277, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///A/523/N2", "atom2_id": "///A/527/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1096, "atom1_serNum": 11195, "atom2_serNum": 11280, "donAcc_type": "standard", "distance": 3.046, "atom1_id": "///A/523/N3", "atom2_id": "///A/527/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1097, "atom1_serNum": 11198, "atom2_serNum": 11717, "donAcc_type": "standard", "distance": 3.024, "atom1_id": "///A/524/OP1", "atom2_id": "///A/547/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1098, "atom1_serNum": 11214, "atom2_serNum": 11685, "donAcc_type": "standard", "distance": 3.361, "atom1_id": "///A/524/N6", "atom2_id": "///A/546/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1099, "atom1_serNum": 11214, "atom2_serNum": 11701, "donAcc_type": "standard", "distance": 3.131, "atom1_id": "///A/524/N6", "atom2_id": "///A/547/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1100, "atom1_serNum": 11229, "atom2_serNum": 11244, "donAcc_type": "acceptable", "distance": 2.293, "atom1_id": "///A/525/O2'", "atom2_id": "///A/526/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1101, "atom1_serNum": 11229, "atom2_serNum": 11247, "donAcc_type": "acceptable", "distance": 3.172, "atom1_id": "///A/525/O2'", "atom2_id": "///A/526/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1102, "atom1_serNum": 11236, "atom2_serNum": 11687, "donAcc_type": "acceptable", "distance": 3.383, "atom1_id": "///A/525/N6", "atom2_id": "///A/546/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1103, "atom1_serNum": 11258, "atom2_serNum": 11762, "donAcc_type": "standard", "distance": 3.672, "atom1_id": "///A/526/N6", "atom2_id": "///A/549/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1104, "atom1_serNum": 11259, "atom2_serNum": 11761, "donAcc_type": "standard", "distance": 3.514, "atom1_id": "///A/526/N1", "atom2_id": "///A/549/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1105, "atom1_serNum": 11265, "atom2_serNum": 73394, "donAcc_type": "standard", "distance": 3.237, "atom1_id": "///A/527/OP2", "atom2_id": "///P/43/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1106, "atom1_serNum": 11273, "atom2_serNum": 73384, "donAcc_type": "acceptable", "distance": 2.768, "atom1_id": "///A/527/O2'", "atom2_id": "///P/42/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1107, "atom1_serNum": 11283, "atom2_serNum": 11667, "donAcc_type": "acceptable", "distance": 3.096, "atom1_id": "///A/527/N3", "atom2_id": "///A/545/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1108, "atom1_serNum": 11287, "atom2_serNum": 73395, "donAcc_type": "standard", "distance": 3.164, "atom1_id": "///A/528/OP2", "atom2_id": "///P/44/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1109, "atom1_serNum": 11291, "atom2_serNum": 11831, "donAcc_type": "standard", "distance": 3.249, "atom1_id": "///A/528/O4'", "atom2_id": "///A/552/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1110, "atom1_serNum": 11295, "atom2_serNum": 11310, "donAcc_type": "acceptable", "distance": 2.656, "atom1_id": "///A/528/O2'", "atom2_id": "///A/529/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1111, "atom1_serNum": 11295, "atom2_serNum": 11851, "donAcc_type": "acceptable", "distance": 2.738, "atom1_id": "///A/528/O2'", "atom2_id": "///A/553/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1112, "atom1_serNum": 11302, "atom2_serNum": 11893, "donAcc_type": "standard", "distance": 2.791, "atom1_id": "///A/528/O6", "atom2_id": "///A/555/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1113, "atom1_serNum": 11303, "atom2_serNum": 11891, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///A/528/N1", "atom2_id": "///A/555/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1114, "atom1_serNum": 11305, "atom2_serNum": 11890, "donAcc_type": "standard", "distance": 2.979, "atom1_id": "///A/528/N2", "atom2_id": "///A/555/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1115, "atom1_serNum": 11318, "atom2_serNum": 11630, "donAcc_type": "acceptable", "distance": 2.853, "atom1_id": "///A/529/O2'", "atom2_id": "///A/543/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1116, "atom1_serNum": 11322, "atom2_serNum": 11629, "donAcc_type": "standard", "distance": 2.974, "atom1_id": "///A/529/O2", "atom2_id": "///A/543/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1117, "atom1_serNum": 11325, "atom2_serNum": 11821, "donAcc_type": "acceptable", "distance": 2.775, "atom1_id": "///A/529/N4", "atom2_id": "///A/552/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1118, "atom1_serNum": 11330, "atom2_serNum": 11367, "donAcc_type": "standard", "distance": 3.096, "atom1_id": "///A/530/OP2", "atom2_id": "///A/531/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1119, "atom1_serNum": 11334, "atom2_serNum": 73401, "donAcc_type": "acceptable", "distance": 3.229, "atom1_id": "///A/530/O4'", "atom2_id": "///P/44/ND1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1120, "atom1_serNum": 11338, "atom2_serNum": 73408, "donAcc_type": "acceptable", "distance": 3.553, "atom1_id": "///A/530/O2'", "atom2_id": "///P/45/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1121, "atom1_serNum": 11345, "atom2_serNum": 11622, "donAcc_type": "acceptable", "distance": 3.330, "atom1_id": "///A/530/N6", "atom2_id": "///A/543/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1122, "atom1_serNum": 11345, "atom2_serNum": 11632, "donAcc_type": "standard", "distance": 3.394, "atom1_id": "///A/530/N6", "atom2_id": "///A/543/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1123, "atom1_serNum": 11364, "atom2_serNum": 11609, "donAcc_type": "standard", "distance": 2.749, "atom1_id": "///A/531/O2", "atom2_id": "///A/542/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1124, "atom1_serNum": 11365, "atom2_serNum": 11607, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///A/531/N3", "atom2_id": "///A/542/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1125, "atom1_serNum": 11367, "atom2_serNum": 11606, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/531/N4", "atom2_id": "///A/542/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1126, "atom1_serNum": 11380, "atom2_serNum": 71957, "donAcc_type": "acceptable", "distance": 3.567, "atom1_id": "///A/532/O2'", "atom2_id": "///N/60/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1127, "atom1_serNum": 11384, "atom2_serNum": 11586, "donAcc_type": "standard", "distance": 2.726, "atom1_id": "///A/532/O2", "atom2_id": "///A/541/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1128, "atom1_serNum": 11385, "atom2_serNum": 11584, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///A/532/N3", "atom2_id": "///A/541/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1129, "atom1_serNum": 11387, "atom2_serNum": 11583, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///A/532/N4", "atom2_id": "///A/541/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1130, "atom1_serNum": 11404, "atom2_serNum": 11563, "donAcc_type": "standard", "distance": 2.759, "atom1_id": "///A/533/O2", "atom2_id": "///A/540/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1131, "atom1_serNum": 11405, "atom2_serNum": 11561, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/533/N3", "atom2_id": "///A/540/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1132, "atom1_serNum": 11407, "atom2_serNum": 11560, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///A/533/N4", "atom2_id": "///A/540/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1133, "atom1_serNum": 11424, "atom2_serNum": 11540, "donAcc_type": "standard", "distance": 2.810, "atom1_id": "///A/534/O2", "atom2_id": "///A/539/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1134, "atom1_serNum": 11425, "atom2_serNum": 11538, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///A/534/N3", "atom2_id": "///A/539/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1135, "atom1_serNum": 11427, "atom2_serNum": 11537, "donAcc_type": "standard", "distance": 2.987, "atom1_id": "///A/534/N4", "atom2_id": "///A/539/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1136, "atom1_serNum": 11438, "atom2_serNum": 71877, "donAcc_type": "standard", "distance": 3.209, "atom1_id": "///A/535/O3'", "atom2_id": "///N/49/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1137, "atom1_serNum": 11440, "atom2_serNum": 11490, "donAcc_type": "acceptable", "distance": 3.346, "atom1_id": "///A/535/O2'", "atom2_id": "///A/537/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1138, "atom1_serNum": 11440, "atom2_serNum": 71877, "donAcc_type": "acceptable", "distance": 2.976, "atom1_id": "///A/535/O2'", "atom2_id": "///N/49/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1139, "atom1_serNum": 11450, "atom2_serNum": 11512, "donAcc_type": "standard", "distance": 2.603, "atom1_id": "///A/535/N2", "atom2_id": "///A/538/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1140, "atom1_serNum": 11467, "atom2_serNum": 71877, "donAcc_type": "standard", "distance": 3.844, "atom1_id": "///A/536/N7", "atom2_id": "///N/49/NZ", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1141, "atom1_serNum": 11473, "atom2_serNum": 27547, "donAcc_type": "standard", "distance": 3.715, "atom1_id": "///A/536/N2", "atom2_id": "///A/1360/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1142, "atom1_serNum": 11486, "atom2_serNum": 11499, "donAcc_type": "acceptable", "distance": 2.233, "atom1_id": "///A/537/O2'", "atom2_id": "///A/538/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1143, "atom1_serNum": 11530, "atom2_serNum": 71563, "donAcc_type": "acceptable", "distance": 3.398, "atom1_id": "///A/539/O2'", "atom2_id": "///N/6/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1144, "atom1_serNum": 11530, "atom2_serNum": 71572, "donAcc_type": "acceptable", "distance": 3.257, "atom1_id": "///A/539/O2'", "atom2_id": "///N/8/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1145, "atom1_serNum": 11553, "atom2_serNum": 71560, "donAcc_type": "acceptable", "distance": 3.591, "atom1_id": "///A/540/O2'", "atom2_id": "///N/6/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1146, "atom1_serNum": 11563, "atom2_serNum": 71932, "donAcc_type": "standard", "distance": 3.145, "atom1_id": "///A/540/N2", "atom2_id": "///N/57/OD1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1147, "atom1_serNum": 11572, "atom2_serNum": 71933, "donAcc_type": "standard", "distance": 2.616, "atom1_id": "///A/541/O4'", "atom2_id": "///N/57/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1148, "atom1_serNum": 11576, "atom2_serNum": 71964, "donAcc_type": "acceptable", "distance": 2.581, "atom1_id": "///A/541/O2'", "atom2_id": "///N/61/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1149, "atom1_serNum": 11590, "atom2_serNum": 71977, "donAcc_type": "acceptable", "distance": 3.826, "atom1_id": "///A/542/OP1", "atom2_id": "///N/62/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1150, "atom1_serNum": 11644, "atom2_serNum": 73404, "donAcc_type": "acceptable", "distance": 2.660, "atom1_id": "///A/544/O2'", "atom2_id": "///P/44/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1151, "atom1_serNum": 11652, "atom2_serNum": 11828, "donAcc_type": "standard", "distance": 3.108, "atom1_id": "///A/544/N1", "atom2_id": "///A/552/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1152, "atom1_serNum": 11654, "atom2_serNum": 11828, "donAcc_type": "standard", "distance": 3.215, "atom1_id": "///A/544/N2", "atom2_id": "///A/552/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1153, "atom1_serNum": 11671, "atom2_serNum": 11761, "donAcc_type": "standard", "distance": 2.987, "atom1_id": "///A/545/O2", "atom2_id": "///A/549/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1154, "atom1_serNum": 11672, "atom2_serNum": 11758, "donAcc_type": "standard", "distance": 3.045, "atom1_id": "///A/545/N3", "atom2_id": "///A/549/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1155, "atom1_serNum": 11687, "atom2_serNum": 11736, "donAcc_type": "acceptable", "distance": 3.097, "atom1_id": "///A/546/O2'", "atom2_id": "///A/548/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1156, "atom1_serNum": 11695, "atom2_serNum": 11746, "donAcc_type": "standard", "distance": 2.283, "atom1_id": "///A/546/N1", "atom2_id": "///A/549/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1157, "atom1_serNum": 11697, "atom2_serNum": 11746, "donAcc_type": "standard", "distance": 3.096, "atom1_id": "///A/546/N2", "atom2_id": "///A/549/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1158, "atom1_serNum": 11697, "atom2_serNum": 11747, "donAcc_type": "standard", "distance": 2.780, "atom1_id": "///A/546/N2", "atom2_id": "///A/549/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1159, "atom1_serNum": 11697, "atom2_serNum": 11803, "donAcc_type": "standard", "distance": 2.993, "atom1_id": "///A/546/N2", "atom2_id": "///A/551/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1160, "atom1_serNum": 11698, "atom2_serNum": 11806, "donAcc_type": "standard", "distance": 2.971, "atom1_id": "///A/546/N3", "atom2_id": "///A/551/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1161, "atom1_serNum": 11701, "atom2_serNum": 73184, "donAcc_type": "standard", "distance": 2.976, "atom1_id": "///A/547/OP1", "atom2_id": "///P/15/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1162, "atom1_serNum": 11791, "atom2_serNum": 25714, "donAcc_type": "questionable", "distance": 3.154, "atom1_id": "///A/551/OP2", "atom2_id": "///A/1275/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1163, "atom1_serNum": 11844, "atom2_serNum": 11858, "donAcc_type": "acceptable", "distance": 2.792, "atom1_id": "///A/553/O2'", "atom2_id": "///A/554/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1164, "atom1_serNum": 11854, "atom2_serNum": 11893, "donAcc_type": "standard", "distance": 3.022, "atom1_id": "///A/553/N3", "atom2_id": "///A/555/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1165, "atom1_serNum": 11886, "atom2_serNum": 11898, "donAcc_type": "acceptable", "distance": 2.723, "atom1_id": "///A/555/O2'", "atom2_id": "///A/556/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1166, "atom1_serNum": 11906, "atom2_serNum": 25737, "donAcc_type": "acceptable", "distance": 3.565, "atom1_id": "///A/556/O2'", "atom2_id": "///A/1276/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1167, "atom1_serNum": 11937, "atom2_serNum": 25703, "donAcc_type": "acceptable", "distance": 3.024, "atom1_id": "///A/558/OP1", "atom2_id": "///A/1274/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1168, "atom1_serNum": 11969, "atom2_serNum": 25323, "donAcc_type": "acceptable", "distance": 3.386, "atom1_id": "///A/559/O2'", "atom2_id": "///A/1257/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1169, "atom1_serNum": 12001, "atom2_serNum": 13380, "donAcc_type": "acceptable", "distance": 2.887, "atom1_id": "///A/560/N3", "atom2_id": "///A/625/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1170, "atom1_serNum": 12005, "atom2_serNum": 12042, "donAcc_type": "standard", "distance": 3.884, "atom1_id": "///A/561/OP2", "atom2_id": "///A/562/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1171, "atom1_serNum": 12013, "atom2_serNum": 13360, "donAcc_type": "acceptable", "distance": 3.209, "atom1_id": "///A/561/O2'", "atom2_id": "///A/624/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1172, "atom1_serNum": 12013, "atom2_serNum": 13376, "donAcc_type": "acceptable", "distance": 3.524, "atom1_id": "///A/561/O2'", "atom2_id": "///A/625/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1173, "atom1_serNum": 12023, "atom2_serNum": 26277, "donAcc_type": "standard", "distance": 3.708, "atom1_id": "///A/561/N3", "atom2_id": "///A/1300/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1174, "atom1_serNum": 12031, "atom2_serNum": 26290, "donAcc_type": "acceptable", "distance": 3.365, "atom1_id": "///A/562/O4'", "atom2_id": "///A/1301/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1175, "atom1_serNum": 12046, "atom2_serNum": 75212, "donAcc_type": "standard", "distance": 3.091, "atom1_id": "///A/563/OP1", "atom2_id": "///T/13/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1176, "atom1_serNum": 12047, "atom2_serNum": 75186, "donAcc_type": "standard", "distance": 3.101, "atom1_id": "///A/563/OP2", "atom2_id": "///T/10/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1177, "atom1_serNum": 12055, "atom2_serNum": 72101, "donAcc_type": "acceptable", "distance": 2.463, "atom1_id": "///A/563/O2'", "atom2_id": "///N/78/OE2", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1178, "atom1_serNum": 12146, "atom2_serNum": 12168, "donAcc_type": "standard", "distance": 3.204, "atom1_id": "///A/567/N3", "atom2_id": "///A/568/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1179, "atom1_serNum": 12161, "atom2_serNum": 12568, "donAcc_type": "acceptable", "distance": 3.289, "atom1_id": "///A/568/O2'", "atom2_id": "///A/587/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1180, "atom1_serNum": 12184, "atom2_serNum": 12535, "donAcc_type": "acceptable", "distance": 3.393, "atom1_id": "///A/569/O2'", "atom2_id": "///A/585/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1181, "atom1_serNum": 12184, "atom2_serNum": 12804, "donAcc_type": "acceptable", "distance": 2.858, "atom1_id": "///A/569/O2'", "atom2_id": "///A/598/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1182, "atom1_serNum": 12188, "atom2_serNum": 12804, "donAcc_type": "acceptable", "distance": 2.908, "atom1_id": "///A/569/O2", "atom2_id": "///A/598/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1183, "atom1_serNum": 12197, "atom2_serNum": 12535, "donAcc_type": "standard", "distance": 3.573, "atom1_id": "///A/570/O5'", "atom2_id": "///A/585/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1184, "atom1_serNum": 12244, "atom2_serNum": 40795, "donAcc_type": "acceptable", "distance": 2.538, "atom1_id": "///A/572/O2'", "atom2_id": "///A/2072/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1185, "atom1_serNum": 12244, "atom2_serNum": 40799, "donAcc_type": "acceptable", "distance": 2.857, "atom1_id": "///A/572/O2'", "atom2_id": "///A/2072/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1186, "atom1_serNum": 12252, "atom2_serNum": 51685, "donAcc_type": "acceptable", "distance": 3.462, "atom1_id": "///A/572/N1", "atom2_id": "///A/2654/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1187, "atom1_serNum": 12254, "atom2_serNum": 51695, "donAcc_type": "standard", "distance": 3.727, "atom1_id": "///A/572/N3", "atom2_id": "///A/2654/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1188, "atom1_serNum": 12258, "atom2_serNum": 54999, "donAcc_type": "standard", "distance": 3.679, "atom1_id": "///A/573/OP2", "atom2_id": "///A/2808/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1189, "atom1_serNum": 12266, "atom2_serNum": 12270, "donAcc_type": "acceptable", "distance": 3.073, "atom1_id": "///A/573/O2'", "atom2_id": "///A/573/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1190, "atom1_serNum": 12266, "atom2_serNum": 54994, "donAcc_type": "acceptable", "distance": 3.266, "atom1_id": "///A/573/O2'", "atom2_id": "///A/2808/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1191, "atom1_serNum": 12273, "atom2_serNum": 54949, "donAcc_type": "acceptable", "distance": 3.908, "atom1_id": "///A/573/N4", "atom2_id": "///A/2806/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1192, "atom1_serNum": 12273, "atom2_serNum": 54986, "donAcc_type": "standard", "distance": 2.851, "atom1_id": "///A/573/N4", "atom2_id": "///A/2808/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1193, "atom1_serNum": 12293, "atom2_serNum": 40787, "donAcc_type": "standard", "distance": 3.032, "atom1_id": "///A/574/N6", "atom2_id": "///A/2072/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1194, "atom1_serNum": 12300, "atom2_serNum": 40780, "donAcc_type": "standard", "distance": 3.778, "atom1_id": "///A/575/OP2", "atom2_id": "///A/2071/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1195, "atom1_serNum": 12308, "atom2_serNum": 12322, "donAcc_type": "acceptable", "distance": 2.822, "atom1_id": "///A/575/O2'", "atom2_id": "///A/576/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1196, "atom1_serNum": 12312, "atom2_serNum": 40758, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///A/575/N7", "atom2_id": "///A/2070/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1197, "atom1_serNum": 12315, "atom2_serNum": 40757, "donAcc_type": "standard", "distance": 2.780, "atom1_id": "///A/575/N6", "atom2_id": "///A/2070/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1198, "atom1_serNum": 12330, "atom2_serNum": 12377, "donAcc_type": "acceptable", "distance": 2.374, "atom1_id": "///A/576/O2'", "atom2_id": "///A/578/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1199, "atom1_serNum": 12340, "atom2_serNum": 40357, "donAcc_type": "standard", "distance": 3.060, "atom1_id": "///A/576/N2", "atom2_id": "///A/2052/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1200, "atom1_serNum": 12344, "atom2_serNum": 12963, "donAcc_type": "standard", "distance": 2.553, "atom1_id": "///A/577/OP1", "atom2_id": "///A/605/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1201, "atom1_serNum": 12344, "atom2_serNum": 12965, "donAcc_type": "standard", "distance": 3.258, "atom1_id": "///A/577/OP1", "atom2_id": "///A/605/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1202, "atom1_serNum": 12358, "atom2_serNum": 40266, "donAcc_type": "standard", "distance": 3.650, "atom1_id": "///A/577/N3", "atom2_id": "///A/2047/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1203, "atom1_serNum": 12360, "atom2_serNum": 40265, "donAcc_type": "standard", "distance": 3.626, "atom1_id": "///A/577/O4", "atom2_id": "///A/2047/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1204, "atom1_serNum": 12364, "atom2_serNum": 12965, "donAcc_type": "standard", "distance": 3.052, "atom1_id": "///A/578/OP1", "atom2_id": "///A/605/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1205, "atom1_serNum": 12364, "atom2_serNum": 70197, "donAcc_type": "acceptable", "distance": 3.509, "atom1_id": "///A/578/OP1", "atom2_id": "///L/45/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1206, "atom1_serNum": 12373, "atom2_serNum": 12386, "donAcc_type": "acceptable", "distance": 2.642, "atom1_id": "///A/578/O2'", "atom2_id": "///A/579/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1207, "atom1_serNum": 12373, "atom2_serNum": 40330, "donAcc_type": "acceptable", "distance": 3.339, "atom1_id": "///A/578/O2'", "atom2_id": "///A/2050/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1208, "atom1_serNum": 12380, "atom2_serNum": 40310, "donAcc_type": "standard", "distance": 3.430, "atom1_id": "///A/578/N6", "atom2_id": "///A/2049/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1209, "atom1_serNum": 12386, "atom2_serNum": 70033, "donAcc_type": "standard", "distance": 2.857, "atom1_id": "///A/579/OP1", "atom2_id": "///L/25/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1210, "atom1_serNum": 12395, "atom2_serNum": 70146, "donAcc_type": "acceptable", "distance": 3.086, "atom1_id": "///A/579/O2'", "atom2_id": "///L/38/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1211, "atom1_serNum": 12395, "atom2_serNum": 70173, "donAcc_type": "acceptable", "distance": 3.537, "atom1_id": "///A/579/O2'", "atom2_id": "///L/42/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1212, "atom1_serNum": 12402, "atom2_serNum": 12942, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///A/579/O6", "atom2_id": "///A/604/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1213, "atom1_serNum": 12403, "atom2_serNum": 12940, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///A/579/N1", "atom2_id": "///A/604/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1214, "atom1_serNum": 12405, "atom2_serNum": 12939, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///A/579/N2", "atom2_id": "///A/604/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1215, "atom1_serNum": 12409, "atom2_serNum": 70032, "donAcc_type": "acceptable", "distance": 2.541, "atom1_id": "///A/580/OP1", "atom2_id": "///L/24/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1216, "atom1_serNum": 12422, "atom2_serNum": 12920, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///A/580/O2", "atom2_id": "///A/603/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1217, "atom1_serNum": 12422, "atom2_serNum": 12922, "donAcc_type": "standard", "distance": 3.085, "atom1_id": "///A/580/O2", "atom2_id": "///A/603/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1218, "atom1_serNum": 12423, "atom2_serNum": 12919, "donAcc_type": "standard", "distance": 2.976, "atom1_id": "///A/580/N3", "atom2_id": "///A/603/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1219, "atom1_serNum": 12442, "atom2_serNum": 12899, "donAcc_type": "standard", "distance": 2.741, "atom1_id": "///A/581/O2", "atom2_id": "///A/602/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1220, "atom1_serNum": 12443, "atom2_serNum": 12897, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///A/581/N3", "atom2_id": "///A/602/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1221, "atom1_serNum": 12445, "atom2_serNum": 12896, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///A/581/N4", "atom2_id": "///A/602/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1222, "atom1_serNum": 12465, "atom2_serNum": 12876, "donAcc_type": "standard", "distance": 3.005, "atom1_id": "///A/582/N6", "atom2_id": "///A/601/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1223, "atom1_serNum": 12466, "atom2_serNum": 12874, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///A/582/N1", "atom2_id": "///A/601/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1224, "atom1_serNum": 12471, "atom2_serNum": 21859, "donAcc_type": "standard", "distance": 3.706, "atom1_id": "///A/583/OP1", "atom2_id": "///A/1041/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1225, "atom1_serNum": 12471, "atom2_serNum": 65201, "donAcc_type": "standard", "distance": 2.314, "atom1_id": "///A/583/OP1", "atom2_id": "///G/2/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1226, "atom1_serNum": 12471, "atom2_serNum": 65204, "donAcc_type": "standard", "distance": 3.214, "atom1_id": "///A/583/OP1", "atom2_id": "///G/2/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1227, "atom1_serNum": 12472, "atom2_serNum": 65204, "donAcc_type": "standard", "distance": 2.463, "atom1_id": "///A/583/OP2", "atom2_id": "///G/2/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1228, "atom1_serNum": 12480, "atom2_serNum": 12499, "donAcc_type": "acceptable", "distance": 3.202, "atom1_id": "///A/583/O2'", "atom2_id": "///A/584/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1229, "atom1_serNum": 12480, "atom2_serNum": 12854, "donAcc_type": "acceptable", "distance": 3.303, "atom1_id": "///A/583/O2'", "atom2_id": "///A/600/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1230, "atom1_serNum": 12480, "atom2_serNum": 65550, "donAcc_type": "acceptable", "distance": 3.345, "atom1_id": "///A/583/O2'", "atom2_id": "///G/48/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1231, "atom1_serNum": 12490, "atom2_serNum": 12851, "donAcc_type": "standard", "distance": 3.071, "atom1_id": "///A/583/N2", "atom2_id": "///A/600/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1232, "atom1_serNum": 12507, "atom2_serNum": 12834, "donAcc_type": "standard", "distance": 2.776, "atom1_id": "///A/584/N7", "atom2_id": "///A/599/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1233, "atom1_serNum": 12510, "atom2_serNum": 12824, "donAcc_type": "acceptable", "distance": 2.751, "atom1_id": "///A/584/N6", "atom2_id": "///A/599/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1234, "atom1_serNum": 12510, "atom2_serNum": 12835, "donAcc_type": "standard", "distance": 3.146, "atom1_id": "///A/584/N6", "atom2_id": "///A/599/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1235, "atom1_serNum": 12532, "atom2_serNum": 12809, "donAcc_type": "standard", "distance": 2.938, "atom1_id": "///A/585/O6", "atom2_id": "///A/598/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1236, "atom1_serNum": 12533, "atom2_serNum": 12808, "donAcc_type": "standard", "distance": 2.973, "atom1_id": "///A/585/N1", "atom2_id": "///A/598/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1237, "atom1_serNum": 12552, "atom2_serNum": 12791, "donAcc_type": "standard", "distance": 2.724, "atom1_id": "///A/586/O2", "atom2_id": "///A/597/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1238, "atom1_serNum": 12553, "atom2_serNum": 12789, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///A/586/N3", "atom2_id": "///A/597/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1239, "atom1_serNum": 12555, "atom2_serNum": 12788, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///A/586/N4", "atom2_id": "///A/597/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1240, "atom1_serNum": 12572, "atom2_serNum": 12768, "donAcc_type": "standard", "distance": 2.754, "atom1_id": "///A/587/O2", "atom2_id": "///A/596/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1241, "atom1_serNum": 12573, "atom2_serNum": 12766, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///A/587/N3", "atom2_id": "///A/596/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1242, "atom1_serNum": 12575, "atom2_serNum": 12765, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///A/587/N4", "atom2_id": "///A/596/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1243, "atom1_serNum": 12592, "atom2_serNum": 12745, "donAcc_type": "standard", "distance": 2.788, "atom1_id": "///A/588/O2", "atom2_id": "///A/595/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1244, "atom1_serNum": 12593, "atom2_serNum": 12743, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///A/588/N3", "atom2_id": "///A/595/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1245, "atom1_serNum": 12595, "atom2_serNum": 12742, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///A/588/N4", "atom2_id": "///A/595/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1246, "atom1_serNum": 12631, "atom2_serNum": 12635, "donAcc_type": "acceptable", "distance": 2.934, "atom1_id": "///A/590/O2'", "atom2_id": "///A/590/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1247, "atom1_serNum": 12635, "atom2_serNum": 12667, "donAcc_type": "questionable", "distance": 3.173, "atom1_id": "///A/590/O2", "atom2_id": "///A/592/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1248, "atom1_serNum": 12636, "atom2_serNum": 12697, "donAcc_type": "standard", "distance": 3.112, "atom1_id": "///A/590/N3", "atom2_id": "///A/593/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1249, "atom1_serNum": 12638, "atom2_serNum": 12700, "donAcc_type": "standard", "distance": 3.015, "atom1_id": "///A/590/O4", "atom2_id": "///A/593/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1250, "atom1_serNum": 12642, "atom2_serNum": 25374, "donAcc_type": "acceptable", "distance": 2.280, "atom1_id": "///A/591/OP1", "atom2_id": "///A/1259/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1251, "atom1_serNum": 12651, "atom2_serNum": 25415, "donAcc_type": "acceptable", "distance": 3.449, "atom1_id": "///A/591/O2'", "atom2_id": "///A/1261/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1252, "atom1_serNum": 12656, "atom2_serNum": 25603, "donAcc_type": "standard", "distance": 2.674, "atom1_id": "///A/591/N3", "atom2_id": "///A/1269/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1253, "atom1_serNum": 12658, "atom2_serNum": 25602, "donAcc_type": "standard", "distance": 2.472, "atom1_id": "///A/591/O4", "atom2_id": "///A/1269/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1254, "atom1_serNum": 12671, "atom2_serNum": 12685, "donAcc_type": "acceptable", "distance": 2.591, "atom1_id": "///A/592/O2'", "atom2_id": "///A/593/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1255, "atom1_serNum": 12706, "atom2_serNum": 71217, "donAcc_type": "standard", "distance": 2.567, "atom1_id": "///A/594/OP1", "atom2_id": "///M/64/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1256, "atom1_serNum": 12706, "atom2_serNum": 71453, "donAcc_type": "acceptable", "distance": 2.705, "atom1_id": "///A/594/OP1", "atom2_id": "///M/92/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1257, "atom1_serNum": 12735, "atom2_serNum": 25407, "donAcc_type": "acceptable", "distance": 2.832, "atom1_id": "///A/595/O2'", "atom2_id": "///A/1260/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1258, "atom1_serNum": 12745, "atom2_serNum": 25405, "donAcc_type": "standard", "distance": 3.793, "atom1_id": "///A/595/N2", "atom2_id": "///A/1260/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1259, "atom1_serNum": 12781, "atom2_serNum": 12797, "donAcc_type": "acceptable", "distance": 2.847, "atom1_id": "///A/597/O2'", "atom2_id": "///A/598/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1260, "atom1_serNum": 12869, "atom2_serNum": 65544, "donAcc_type": "acceptable", "distance": 2.903, "atom1_id": "///A/601/O2'", "atom2_id": "///G/48/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1261, "atom1_serNum": 12880, "atom2_serNum": 66055, "donAcc_type": "standard", "distance": 3.053, "atom1_id": "///A/602/OP1", "atom2_id": "///G/115/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1262, "atom1_serNum": 12939, "atom2_serNum": 70224, "donAcc_type": "standard", "distance": 2.955, "atom1_id": "///A/604/O2", "atom2_id": "///L/48/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1263, "atom1_serNum": 12955, "atom2_serNum": 70197, "donAcc_type": "acceptable", "distance": 3.033, "atom1_id": "///A/605/O2'", "atom2_id": "///L/45/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1264, "atom1_serNum": 12978, "atom2_serNum": 12990, "donAcc_type": "acceptable", "distance": 2.774, "atom1_id": "///A/606/O2'", "atom2_id": "///A/607/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1265, "atom1_serNum": 12983, "atom2_serNum": 40588, "donAcc_type": "standard", "distance": 3.309, "atom1_id": "///A/606/N3", "atom2_id": "///A/2062/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1266, "atom1_serNum": 12985, "atom2_serNum": 40587, "donAcc_type": "standard", "distance": 3.378, "atom1_id": "///A/606/O4", "atom2_id": "///A/2062/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1267, "atom1_serNum": 12985, "atom2_serNum": 40588, "donAcc_type": "questionable", "distance": 3.175, "atom1_id": "///A/606/O4", "atom2_id": "///A/2062/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1268, "atom1_serNum": 13005, "atom2_serNum": 13323, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///A/607/O6", "atom2_id": "///A/622/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1269, "atom1_serNum": 13006, "atom2_serNum": 13324, "donAcc_type": "standard", "distance": 3.036, "atom1_id": "///A/607/N1", "atom2_id": "///A/622/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1270, "atom1_serNum": 13008, "atom2_serNum": 70136, "donAcc_type": "standard", "distance": 3.312, "atom1_id": "///A/607/N2", "atom2_id": "///L/37/OE1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1271, "atom1_serNum": 13012, "atom2_serNum": 71314, "donAcc_type": "acceptable", "distance": 2.917, "atom1_id": "///A/608/OP1", "atom2_id": "///M/76/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1272, "atom1_serNum": 13021, "atom2_serNum": 26125, "donAcc_type": "acceptable", "distance": 3.150, "atom1_id": "///A/608/O2'", "atom2_id": "///A/1293/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1273, "atom1_serNum": 13025, "atom2_serNum": 13303, "donAcc_type": "standard", "distance": 2.800, "atom1_id": "///A/608/O2", "atom2_id": "///A/621/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1274, "atom1_serNum": 13026, "atom2_serNum": 13301, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///A/608/N3", "atom2_id": "///A/621/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1275, "atom1_serNum": 13028, "atom2_serNum": 13300, "donAcc_type": "standard", "distance": 2.954, "atom1_id": "///A/608/N4", "atom2_id": "///A/621/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1276, "atom1_serNum": 13033, "atom2_serNum": 71331, "donAcc_type": "standard", "distance": 2.785, "atom1_id": "///A/609/OP2", "atom2_id": "///M/79/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1277, "atom1_serNum": 13048, "atom2_serNum": 13280, "donAcc_type": "standard", "distance": 3.029, "atom1_id": "///A/609/N4", "atom2_id": "///A/620/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1278, "atom1_serNum": 13052, "atom2_serNum": 71355, "donAcc_type": "questionable", "distance": 3.020, "atom1_id": "///A/610/OP1", "atom2_id": "///M/81/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1279, "atom1_serNum": 13061, "atom2_serNum": 18358, "donAcc_type": "acceptable", "distance": 3.307, "atom1_id": "///A/610/O2'", "atom2_id": "///A/856/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1280, "atom1_serNum": 13066, "atom2_serNum": 13259, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///A/610/N3", "atom2_id": "///A/619/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1281, "atom1_serNum": 13068, "atom2_serNum": 13258, "donAcc_type": "standard", "distance": 3.003, "atom1_id": "///A/610/O4", "atom2_id": "///A/619/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1282, "atom1_serNum": 13081, "atom2_serNum": 13094, "donAcc_type": "acceptable", "distance": 2.819, "atom1_id": "///A/611/O2'", "atom2_id": "///A/612/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1283, "atom1_serNum": 13092, "atom2_serNum": 67444, "donAcc_type": "acceptable", "distance": 3.140, "atom1_id": "///A/612/OP1", "atom2_id": "///I/35/ND1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1284, "atom1_serNum": 13105, "atom2_serNum": 13145, "donAcc_type": "questionable", "distance": 3.155, "atom1_id": "///A/612/O2", "atom2_id": "///A/614/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1285, "atom1_serNum": 13105, "atom2_serNum": 40520, "donAcc_type": "standard", "distance": 3.075, "atom1_id": "///A/612/O2", "atom2_id": "///A/2059/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1286, "atom1_serNum": 13106, "atom2_serNum": 13156, "donAcc_type": "standard", "distance": 3.185, "atom1_id": "///A/612/N3", "atom2_id": "///A/615/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1287, "atom1_serNum": 13108, "atom2_serNum": 71348, "donAcc_type": "standard", "distance": 3.483, "atom1_id": "///A/612/O4", "atom2_id": "///M/80/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1288, "atom1_serNum": 13117, "atom2_serNum": 20795, "donAcc_type": "acceptable", "distance": 2.852, "atom1_id": "///A/613/O4'", "atom2_id": "///A/992/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1289, "atom1_serNum": 13121, "atom2_serNum": 20805, "donAcc_type": "acceptable", "distance": 3.821, "atom1_id": "///A/613/O2'", "atom2_id": "///A/992/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1290, "atom1_serNum": 13121, "atom2_serNum": 21605, "donAcc_type": "acceptable", "distance": 3.333, "atom1_id": "///A/613/O2'", "atom2_id": "///A/1029/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1291, "atom1_serNum": 13125, "atom2_serNum": 21604, "donAcc_type": "standard", "distance": 3.600, "atom1_id": "///A/613/O2", "atom2_id": "///A/1029/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1292, "atom1_serNum": 13151, "atom2_serNum": 40509, "donAcc_type": "standard", "distance": 2.546, "atom1_id": "///A/614/N2", "atom2_id": "///A/2059/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1293, "atom1_serNum": 13160, "atom2_serNum": 40517, "donAcc_type": "questionable", "distance": 2.822, "atom1_id": "///A/615/O4'", "atom2_id": "///A/2059/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1294, "atom1_serNum": 13164, "atom2_serNum": 13177, "donAcc_type": "acceptable", "distance": 2.396, "atom1_id": "///A/615/O2'", "atom2_id": "///A/616/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1295, "atom1_serNum": 13164, "atom2_serNum": 13199, "donAcc_type": "acceptable", "distance": 3.633, "atom1_id": "///A/615/O2'", "atom2_id": "///A/617/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1296, "atom1_serNum": 13184, "atom2_serNum": 13197, "donAcc_type": "acceptable", "distance": 2.668, "atom1_id": "///A/616/O2'", "atom2_id": "///A/617/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1297, "atom1_serNum": 13191, "atom2_serNum": 40501, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///A/616/N6", "atom2_id": "///A/2058/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1298, "atom1_serNum": 13192, "atom2_serNum": 40500, "donAcc_type": "standard", "distance": 2.987, "atom1_id": "///A/616/N1", "atom2_id": "///A/2058/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1299, "atom1_serNum": 13198, "atom2_serNum": 13258, "donAcc_type": "standard", "distance": 3.839, "atom1_id": "///A/617/OP2", "atom2_id": "///A/619/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1300, "atom1_serNum": 13206, "atom2_serNum": 13217, "donAcc_type": "acceptable", "distance": 2.999, "atom1_id": "///A/617/O2'", "atom2_id": "///A/617/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1301, "atom1_serNum": 13206, "atom2_serNum": 13229, "donAcc_type": "acceptable", "distance": 3.128, "atom1_id": "///A/617/O2'", "atom2_id": "///A/618/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1302, "atom1_serNum": 13227, "atom2_serNum": 41060, "donAcc_type": "standard", "distance": 2.656, "atom1_id": "///A/618/O3'", "atom2_id": "///A/2084/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1303, "atom1_serNum": 13243, "atom2_serNum": 41060, "donAcc_type": "standard", "distance": 2.410, "atom1_id": "///A/619/OP2", "atom2_id": "///A/2084/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1304, "atom1_serNum": 13293, "atom2_serNum": 13312, "donAcc_type": "acceptable", "distance": 2.529, "atom1_id": "///A/621/O2'", "atom2_id": "///A/622/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1305, "atom1_serNum": 13293, "atom2_serNum": 26130, "donAcc_type": "acceptable", "distance": 2.983, "atom1_id": "///A/621/O2'", "atom2_id": "///A/1294/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1306, "atom1_serNum": 13307, "atom2_serNum": 26161, "donAcc_type": "acceptable", "distance": 3.024, "atom1_id": "///A/622/OP1", "atom2_id": "///A/1295/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1307, "atom1_serNum": 13316, "atom2_serNum": 13352, "donAcc_type": "acceptable", "distance": 2.869, "atom1_id": "///A/622/O2'", "atom2_id": "///A/624/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1308, "atom1_serNum": 13338, "atom2_serNum": 40271, "donAcc_type": "acceptable", "distance": 3.352, "atom1_id": "///A/623/O2'", "atom2_id": "///A/2048/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1309, "atom1_serNum": 13345, "atom2_serNum": 26297, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///A/623/N6", "atom2_id": "///A/1301/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1310, "atom1_serNum": 13346, "atom2_serNum": 26295, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///A/623/N1", "atom2_id": "///A/1301/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1311, "atom1_serNum": 13356, "atom2_serNum": 75163, "donAcc_type": "standard", "distance": 3.926, "atom1_id": "///A/624/O4'", "atom2_id": "///T/7/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1312, "atom1_serNum": 13364, "atom2_serNum": 26277, "donAcc_type": "standard", "distance": 2.758, "atom1_id": "///A/624/O2", "atom2_id": "///A/1300/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1313, "atom1_serNum": 13365, "atom2_serNum": 26275, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///A/624/N3", "atom2_id": "///A/1300/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1314, "atom1_serNum": 13367, "atom2_serNum": 26274, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///A/624/N4", "atom2_id": "///A/1300/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1315, "atom1_serNum": 13371, "atom2_serNum": 70108, "donAcc_type": "standard", "distance": 3.391, "atom1_id": "///A/625/OP1", "atom2_id": "///L/33/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1316, "atom1_serNum": 13372, "atom2_serNum": 70108, "donAcc_type": "standard", "distance": 2.339, "atom1_id": "///A/625/OP2", "atom2_id": "///L/33/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1317, "atom1_serNum": 13384, "atom2_serNum": 26254, "donAcc_type": "standard", "distance": 2.806, "atom1_id": "///A/625/O2", "atom2_id": "///A/1299/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1318, "atom1_serNum": 13385, "atom2_serNum": 26252, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///A/625/N3", "atom2_id": "///A/1299/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1319, "atom1_serNum": 13387, "atom2_serNum": 26251, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///A/625/N4", "atom2_id": "///A/1299/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1320, "atom1_serNum": 13400, "atom2_serNum": 13419, "donAcc_type": "acceptable", "distance": 3.232, "atom1_id": "///A/626/O2'", "atom2_id": "///A/627/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1321, "atom1_serNum": 13407, "atom2_serNum": 26231, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///A/626/O6", "atom2_id": "///A/1298/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1322, "atom1_serNum": 13408, "atom2_serNum": 26229, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/626/N1", "atom2_id": "///A/1298/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1323, "atom1_serNum": 13410, "atom2_serNum": 26228, "donAcc_type": "standard", "distance": 2.813, "atom1_id": "///A/626/N2", "atom2_id": "///A/1298/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1324, "atom1_serNum": 13430, "atom2_serNum": 26211, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///A/627/O6", "atom2_id": "///A/1297/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1325, "atom1_serNum": 13431, "atom2_serNum": 26209, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///A/627/N1", "atom2_id": "///A/1297/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1326, "atom1_serNum": 13433, "atom2_serNum": 26208, "donAcc_type": "standard", "distance": 2.819, "atom1_id": "///A/627/N2", "atom2_id": "///A/1297/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1327, "atom1_serNum": 13437, "atom2_serNum": 69884, "donAcc_type": "questionable", "distance": 3.176, "atom1_id": "///A/628/OP1", "atom2_id": "///L/5/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1328, "atom1_serNum": 13450, "atom2_serNum": 26191, "donAcc_type": "standard", "distance": 2.808, "atom1_id": "///A/628/O2", "atom2_id": "///A/1296/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1329, "atom1_serNum": 13451, "atom2_serNum": 26189, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///A/628/N3", "atom2_id": "///A/1296/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1330, "atom1_serNum": 13453, "atom2_serNum": 26188, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///A/628/N4", "atom2_id": "///A/1296/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1331, "atom1_serNum": 13474, "atom2_serNum": 26109, "donAcc_type": "standard", "distance": 3.498, "atom1_id": "///A/629/N1", "atom2_id": "///A/1293/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1332, "atom1_serNum": 13476, "atom2_serNum": 26143, "donAcc_type": "standard", "distance": 3.151, "atom1_id": "///A/629/N2", "atom2_id": "///A/1294/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1333, "atom1_serNum": 13477, "atom2_serNum": 26146, "donAcc_type": "standard", "distance": 2.990, "atom1_id": "///A/629/N3", "atom2_id": "///A/1294/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1334, "atom1_serNum": 13481, "atom2_serNum": 26079, "donAcc_type": "standard", "distance": 3.237, "atom1_id": "///A/630/OP2", "atom2_id": "///A/1291/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1335, "atom1_serNum": 13489, "atom2_serNum": 15396, "donAcc_type": "acceptable", "distance": 3.300, "atom1_id": "///A/630/O2'", "atom2_id": "///A/718/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1336, "atom1_serNum": 13497, "atom2_serNum": 18366, "donAcc_type": "acceptable", "distance": 2.414, "atom1_id": "///A/630/N1", "atom2_id": "///A/856/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1337, "atom1_serNum": 13499, "atom2_serNum": 18376, "donAcc_type": "standard", "distance": 3.300, "atom1_id": "///A/630/N3", "atom2_id": "///A/856/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1338, "atom1_serNum": 13502, "atom2_serNum": 67368, "donAcc_type": "standard", "distance": 2.762, "atom1_id": "///A/631/OP1", "atom2_id": "///I/21/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1339, "atom1_serNum": 13503, "atom2_serNum": 67367, "donAcc_type": "standard", "distance": 3.021, "atom1_id": "///A/631/OP2", "atom2_id": "///I/21/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1340, "atom1_serNum": 13518, "atom2_serNum": 18393, "donAcc_type": "questionable", "distance": 3.306, "atom1_id": "///A/631/O6", "atom2_id": "///A/857/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1341, "atom1_serNum": 13539, "atom2_serNum": 15380, "donAcc_type": "standard", "distance": 3.183, "atom1_id": "///A/632/N3", "atom2_id": "///A/717/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1342, "atom1_serNum": 13541, "atom2_serNum": 15384, "donAcc_type": "questionable", "distance": 2.973, "atom1_id": "///A/632/O4", "atom2_id": "///A/718/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1343, "atom1_serNum": 13554, "atom2_serNum": 13570, "donAcc_type": "acceptable", "distance": 2.868, "atom1_id": "///A/633/O2'", "atom2_id": "///A/634/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1344, "atom1_serNum": 13559, "atom2_serNum": 15333, "donAcc_type": "standard", "distance": 2.851, "atom1_id": "///A/633/N3", "atom2_id": "///A/715/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1345, "atom1_serNum": 13561, "atom2_serNum": 15332, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///A/633/O4", "atom2_id": "///A/715/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1346, "atom1_serNum": 13581, "atom2_serNum": 15312, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/634/N6", "atom2_id": "///A/714/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1347, "atom1_serNum": 13582, "atom2_serNum": 15310, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///A/634/N1", "atom2_id": "///A/714/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1348, "atom1_serNum": 13600, "atom2_serNum": 15292, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///A/635/O2", "atom2_id": "///A/713/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1349, "atom1_serNum": 13601, "atom2_serNum": 15290, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///A/635/N3", "atom2_id": "///A/713/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1350, "atom1_serNum": 13603, "atom2_serNum": 15289, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///A/635/N4", "atom2_id": "///A/713/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1351, "atom1_serNum": 13623, "atom2_serNum": 15269, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///A/636/O6", "atom2_id": "///A/712/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1352, "atom1_serNum": 13624, "atom2_serNum": 15267, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/636/N1", "atom2_id": "///A/712/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1353, "atom1_serNum": 13626, "atom2_serNum": 15266, "donAcc_type": "standard", "distance": 2.805, "atom1_id": "///A/636/N2", "atom2_id": "///A/712/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1354, "atom1_serNum": 13646, "atom2_serNum": 15249, "donAcc_type": "standard", "distance": 2.993, "atom1_id": "///A/637/N6", "atom2_id": "///A/711/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1355, "atom1_serNum": 13647, "atom2_serNum": 15247, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///A/637/N1", "atom2_id": "///A/711/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1356, "atom1_serNum": 13661, "atom2_serNum": 13677, "donAcc_type": "acceptable", "distance": 3.076, "atom1_id": "///A/638/O2'", "atom2_id": "///A/639/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1357, "atom1_serNum": 13665, "atom2_serNum": 15227, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///A/638/O2", "atom2_id": "///A/710/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1358, "atom1_serNum": 13666, "atom2_serNum": 15226, "donAcc_type": "standard", "distance": 3.195, "atom1_id": "///A/638/N3", "atom2_id": "///A/710/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1359, "atom1_serNum": 13681, "atom2_serNum": 13697, "donAcc_type": "acceptable", "distance": 3.284, "atom1_id": "///A/639/O2'", "atom2_id": "///A/640/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1360, "atom1_serNum": 13685, "atom2_serNum": 15206, "donAcc_type": "standard", "distance": 2.760, "atom1_id": "///A/639/O2", "atom2_id": "///A/709/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1361, "atom1_serNum": 13686, "atom2_serNum": 15204, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///A/639/N3", "atom2_id": "///A/709/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1362, "atom1_serNum": 13688, "atom2_serNum": 15203, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///A/639/N4", "atom2_id": "///A/709/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1363, "atom1_serNum": 13708, "atom2_serNum": 15183, "donAcc_type": "questionable", "distance": 3.104, "atom1_id": "///A/640/O4", "atom2_id": "///A/708/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1364, "atom1_serNum": 13721, "atom2_serNum": 67283, "donAcc_type": "acceptable", "distance": 3.036, "atom1_id": "///A/641/O2'", "atom2_id": "///I/11/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1365, "atom1_serNum": 13725, "atom2_serNum": 15163, "donAcc_type": "standard", "distance": 2.732, "atom1_id": "///A/641/O2", "atom2_id": "///A/707/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1366, "atom1_serNum": 13726, "atom2_serNum": 15161, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///A/641/N3", "atom2_id": "///A/707/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1367, "atom1_serNum": 13728, "atom2_serNum": 15160, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/641/N4", "atom2_id": "///A/707/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1368, "atom1_serNum": 13741, "atom2_serNum": 13760, "donAcc_type": "acceptable", "distance": 3.047, "atom1_id": "///A/642/O2'", "atom2_id": "///A/643/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1369, "atom1_serNum": 13741, "atom2_serNum": 67270, "donAcc_type": "acceptable", "distance": 3.499, "atom1_id": "///A/642/O2'", "atom2_id": "///I/9/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1370, "atom1_serNum": 13748, "atom2_serNum": 15140, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///A/642/O6", "atom2_id": "///A/706/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1371, "atom1_serNum": 13749, "atom2_serNum": 15138, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///A/642/N1", "atom2_id": "///A/706/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1372, "atom1_serNum": 13751, "atom2_serNum": 15137, "donAcc_type": "standard", "distance": 2.748, "atom1_id": "///A/642/N2", "atom2_id": "///A/706/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1373, "atom1_serNum": 13769, "atom2_serNum": 15119, "donAcc_type": "standard", "distance": 2.848, "atom1_id": "///A/643/N3", "atom2_id": "///A/705/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1374, "atom1_serNum": 13771, "atom2_serNum": 15118, "donAcc_type": "standard", "distance": 3.037, "atom1_id": "///A/643/O4", "atom2_id": "///A/705/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1375, "atom1_serNum": 13775, "atom2_serNum": 63425, "donAcc_type": "standard", "distance": 3.366, "atom1_id": "///A/644/OP1", "atom2_id": "///E/29/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1376, "atom1_serNum": 13791, "atom2_serNum": 15096, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///A/644/O6", "atom2_id": "///A/704/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1377, "atom1_serNum": 13792, "atom2_serNum": 15095, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///A/644/N1", "atom2_id": "///A/704/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1378, "atom1_serNum": 13794, "atom2_serNum": 13894, "donAcc_type": "acceptable", "distance": 3.449, "atom1_id": "///A/644/N2", "atom2_id": "///A/649/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1379, "atom1_serNum": 13794, "atom2_serNum": 13908, "donAcc_type": "standard", "distance": 2.287, "atom1_id": "///A/644/N2", "atom2_id": "///A/650/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1380, "atom1_serNum": 13794, "atom2_serNum": 15095, "donAcc_type": "standard", "distance": 3.163, "atom1_id": "///A/644/N2", "atom2_id": "///A/704/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1381, "atom1_serNum": 13807, "atom2_serNum": 13887, "donAcc_type": "acceptable", "distance": 3.381, "atom1_id": "///A/645/O2'", "atom2_id": "///A/649/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1382, "atom1_serNum": 13811, "atom2_serNum": 15078, "donAcc_type": "standard", "distance": 2.793, "atom1_id": "///A/645/O2", "atom2_id": "///A/703/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1383, "atom1_serNum": 13812, "atom2_serNum": 15076, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///A/645/N3", "atom2_id": "///A/703/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1384, "atom1_serNum": 13814, "atom2_serNum": 15075, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///A/645/N4", "atom2_id": "///A/703/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1385, "atom1_serNum": 13820, "atom2_serNum": 13885, "donAcc_type": "questionable", "distance": 3.241, "atom1_id": "///A/646/O5'", "atom2_id": "///A/649/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1386, "atom1_serNum": 13827, "atom2_serNum": 13842, "donAcc_type": "acceptable", "distance": 3.170, "atom1_id": "///A/646/O2'", "atom2_id": "///A/647/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1387, "atom1_serNum": 13827, "atom2_serNum": 13869, "donAcc_type": "acceptable", "distance": 3.568, "atom1_id": "///A/646/O2'", "atom2_id": "///A/648/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1388, "atom1_serNum": 13827, "atom2_serNum": 15054, "donAcc_type": "acceptable", "distance": 3.257, "atom1_id": "///A/646/O2'", "atom2_id": "///A/702/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1389, "atom1_serNum": 13841, "atom2_serNum": 15053, "donAcc_type": "standard", "distance": 3.218, "atom1_id": "///A/647/OP2", "atom2_id": "///A/702/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1390, "atom1_serNum": 13842, "atom2_serNum": 15053, "donAcc_type": "standard", "distance": 2.544, "atom1_id": "///A/647/O5'", "atom2_id": "///A/702/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1391, "atom1_serNum": 13856, "atom2_serNum": 15042, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///A/647/N6", "atom2_id": "///A/702/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1392, "atom1_serNum": 13857, "atom2_serNum": 14372, "donAcc_type": "acceptable", "distance": 2.804, "atom1_id": "///A/647/N1", "atom2_id": "///A/671/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1393, "atom1_serNum": 13859, "atom2_serNum": 14382, "donAcc_type": "standard", "distance": 3.851, "atom1_id": "///A/647/N3", "atom2_id": "///A/671/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1394, "atom1_serNum": 13871, "atom2_serNum": 13886, "donAcc_type": "acceptable", "distance": 2.293, "atom1_id": "///A/648/O2'", "atom2_id": "///A/649/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1395, "atom1_serNum": 13878, "atom2_serNum": 14359, "donAcc_type": "standard", "distance": 2.807, "atom1_id": "///A/648/O6", "atom2_id": "///A/670/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1396, "atom1_serNum": 13879, "atom2_serNum": 14357, "donAcc_type": "standard", "distance": 2.818, "atom1_id": "///A/648/N1", "atom2_id": "///A/670/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1397, "atom1_serNum": 13881, "atom2_serNum": 14356, "donAcc_type": "standard", "distance": 2.772, "atom1_id": "///A/648/N2", "atom2_id": "///A/670/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1398, "atom1_serNum": 13894, "atom2_serNum": 13908, "donAcc_type": "acceptable", "distance": 2.334, "atom1_id": "///A/649/O2'", "atom2_id": "///A/650/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1399, "atom1_serNum": 13894, "atom2_serNum": 13910, "donAcc_type": "acceptable", "distance": 2.859, "atom1_id": "///A/649/O2'", "atom2_id": "///A/650/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1400, "atom1_serNum": 13894, "atom2_serNum": 15091, "donAcc_type": "acceptable", "distance": 3.502, "atom1_id": "///A/649/O2'", "atom2_id": "///A/704/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1401, "atom1_serNum": 13901, "atom2_serNum": 14339, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///A/649/O6", "atom2_id": "///A/669/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1402, "atom1_serNum": 13902, "atom2_serNum": 14337, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///A/649/N1", "atom2_id": "///A/669/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1403, "atom1_serNum": 13904, "atom2_serNum": 14336, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/649/N2", "atom2_id": "///A/669/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1404, "atom1_serNum": 13904, "atom2_serNum": 15089, "donAcc_type": "standard", "distance": 3.864, "atom1_id": "///A/649/N2", "atom2_id": "///A/704/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1405, "atom1_serNum": 13921, "atom2_serNum": 14317, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/650/O2", "atom2_id": "///A/668/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1406, "atom1_serNum": 13922, "atom2_serNum": 14316, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/650/N3", "atom2_id": "///A/668/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1407, "atom1_serNum": 13928, "atom2_serNum": 63967, "donAcc_type": "standard", "distance": 3.042, "atom1_id": "///A/651/OP1", "atom2_id": "///E/103/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1408, "atom1_serNum": 13941, "atom2_serNum": 14294, "donAcc_type": "standard", "distance": 2.617, "atom1_id": "///A/651/O2", "atom2_id": "///A/667/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1409, "atom1_serNum": 13942, "atom2_serNum": 14291, "donAcc_type": "standard", "distance": 3.191, "atom1_id": "///A/651/N3", "atom2_id": "///A/667/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1410, "atom1_serNum": 13949, "atom2_serNum": 14249, "donAcc_type": "standard", "distance": 2.243, "atom1_id": "///A/652/OP2", "atom2_id": "///A/665/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1411, "atom1_serNum": 13949, "atom2_serNum": 14251, "donAcc_type": "standard", "distance": 3.125, "atom1_id": "///A/652/OP2", "atom2_id": "///A/665/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1412, "atom1_serNum": 13983, "atom2_serNum": 14251, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///A/653/N7", "atom2_id": "///A/665/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1413, "atom1_serNum": 13986, "atom2_serNum": 14241, "donAcc_type": "acceptable", "distance": 2.918, "atom1_id": "///A/653/N6", "atom2_id": "///A/665/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1414, "atom1_serNum": 13986, "atom2_serNum": 14252, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///A/653/N6", "atom2_id": "///A/665/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1415, "atom1_serNum": 14001, "atom2_serNum": 14020, "donAcc_type": "acceptable", "distance": 3.192, "atom1_id": "///A/654/O2'", "atom2_id": "///A/655/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1416, "atom1_serNum": 14008, "atom2_serNum": 14228, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///A/654/O6", "atom2_id": "///A/664/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1417, "atom1_serNum": 14009, "atom2_serNum": 14226, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///A/654/N1", "atom2_id": "///A/664/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1418, "atom1_serNum": 14011, "atom2_serNum": 14225, "donAcc_type": "standard", "distance": 2.801, "atom1_id": "///A/654/N2", "atom2_id": "///A/664/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1419, "atom1_serNum": 14028, "atom2_serNum": 14208, "donAcc_type": "standard", "distance": 2.816, "atom1_id": "///A/655/O2", "atom2_id": "///A/663/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1420, "atom1_serNum": 14029, "atom2_serNum": 14206, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///A/655/N3", "atom2_id": "///A/663/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1421, "atom1_serNum": 14031, "atom2_serNum": 14205, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///A/655/N4", "atom2_id": "///A/663/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1422, "atom1_serNum": 14051, "atom2_serNum": 14185, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///A/656/N6", "atom2_id": "///A/662/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1423, "atom1_serNum": 14052, "atom2_serNum": 14183, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///A/656/N1", "atom2_id": "///A/662/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1424, "atom1_serNum": 14066, "atom2_serNum": 14140, "donAcc_type": "acceptable", "distance": 2.864, "atom1_id": "///A/657/O2'", "atom2_id": "///A/660/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1425, "atom1_serNum": 14066, "atom2_serNum": 14163, "donAcc_type": "acceptable", "distance": 2.917, "atom1_id": "///A/657/O2'", "atom2_id": "///A/661/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1426, "atom1_serNum": 14076, "atom2_serNum": 14160, "donAcc_type": "standard", "distance": 2.946, "atom1_id": "///A/657/N2", "atom2_id": "///A/661/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1427, "atom1_serNum": 14077, "atom2_serNum": 14163, "donAcc_type": "standard", "distance": 3.203, "atom1_id": "///A/657/N3", "atom2_id": "///A/661/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1428, "atom1_serNum": 14089, "atom2_serNum": 14104, "donAcc_type": "acceptable", "distance": 2.867, "atom1_id": "///A/658/O2'", "atom2_id": "///A/659/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1429, "atom1_serNum": 14133, "atom2_serNum": 63511, "donAcc_type": "acceptable", "distance": 3.875, "atom1_id": "///A/660/O2'", "atom2_id": "///E/40/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1430, "atom1_serNum": 14133, "atom2_serNum": 63531, "donAcc_type": "acceptable", "distance": 2.859, "atom1_id": "///A/660/O2'", "atom2_id": "///E/43/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1431, "atom1_serNum": 14143, "atom2_serNum": 64534, "donAcc_type": "standard", "distance": 2.554, "atom1_id": "///A/660/N2", "atom2_id": "///E/182/OD1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1432, "atom1_serNum": 14152, "atom2_serNum": 63511, "donAcc_type": "standard", "distance": 3.378, "atom1_id": "///A/661/O4'", "atom2_id": "///E/40/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1433, "atom1_serNum": 14156, "atom2_serNum": 63510, "donAcc_type": "acceptable", "distance": 2.873, "atom1_id": "///A/661/O2'", "atom2_id": "///E/40/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1434, "atom1_serNum": 14156, "atom2_serNum": 64534, "donAcc_type": "acceptable", "distance": 3.099, "atom1_id": "///A/661/O2'", "atom2_id": "///E/182/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1435, "atom1_serNum": 14166, "atom2_serNum": 64534, "donAcc_type": "questionable", "distance": 2.904, "atom1_id": "///A/661/N3", "atom2_id": "///E/182/OD1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1436, "atom1_serNum": 14178, "atom2_serNum": 14194, "donAcc_type": "acceptable", "distance": 3.115, "atom1_id": "///A/662/O2'", "atom2_id": "///A/663/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1437, "atom1_serNum": 14190, "atom2_serNum": 63997, "donAcc_type": "standard", "distance": 2.629, "atom1_id": "///A/663/OP2", "atom2_id": "///E/106/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1438, "atom1_serNum": 14221, "atom2_serNum": 14233, "donAcc_type": "acceptable", "distance": 2.998, "atom1_id": "///A/664/O2'", "atom2_id": "///A/665/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1439, "atom1_serNum": 14221, "atom2_serNum": 14234, "donAcc_type": "acceptable", "distance": 2.592, "atom1_id": "///A/664/O2'", "atom2_id": "///A/665/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1440, "atom1_serNum": 14221, "atom2_serNum": 14237, "donAcc_type": "acceptable", "distance": 2.385, "atom1_id": "///A/664/O2'", "atom2_id": "///A/665/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1441, "atom1_serNum": 14274, "atom2_serNum": 14316, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///A/666/N2", "atom2_id": "///A/668/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1442, "atom1_serNum": 14352, "atom2_serNum": 15082, "donAcc_type": "acceptable", "distance": 2.919, "atom1_id": "///A/670/O2'", "atom2_id": "///A/704/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1443, "atom1_serNum": 14411, "atom2_serNum": 14642, "donAcc_type": "standard", "distance": 3.157, "atom1_id": "///A/673/O4'", "atom2_id": "///A/683/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1444, "atom1_serNum": 14415, "atom2_serNum": 14622, "donAcc_type": "acceptable", "distance": 2.734, "atom1_id": "///A/673/O2'", "atom2_id": "///A/682/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1445, "atom1_serNum": 14419, "atom2_serNum": 67588, "donAcc_type": "standard", "distance": 3.355, "atom1_id": "///A/673/N7", "atom2_id": "///I/78/ND2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1446, "atom1_serNum": 14422, "atom2_serNum": 14627, "donAcc_type": "standard", "distance": 2.593, "atom1_id": "///A/673/N6", "atom2_id": "///A/683/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1447, "atom1_serNum": 14422, "atom2_serNum": 14628, "donAcc_type": "standard", "distance": 2.780, "atom1_id": "///A/673/N6", "atom2_id": "///A/683/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1448, "atom1_serNum": 14422, "atom2_serNum": 67836, "donAcc_type": "standard", "distance": 3.131, "atom1_id": "///A/673/N6", "atom2_id": "///I/113/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1449, "atom1_serNum": 14444, "atom2_serNum": 14599, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///A/674/O6", "atom2_id": "///A/681/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1450, "atom1_serNum": 14445, "atom2_serNum": 14597, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///A/674/N1", "atom2_id": "///A/681/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1451, "atom1_serNum": 14447, "atom2_serNum": 14596, "donAcc_type": "standard", "distance": 2.745, "atom1_id": "///A/674/N2", "atom2_id": "///A/681/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1452, "atom1_serNum": 14447, "atom2_serNum": 14676, "donAcc_type": "standard", "distance": 3.677, "atom1_id": "///A/674/N2", "atom2_id": "///A/685/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1453, "atom1_serNum": 14451, "atom2_serNum": 14918, "donAcc_type": "acceptable", "distance": 3.303, "atom1_id": "///A/675/OP1", "atom2_id": "///A/696/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1454, "atom1_serNum": 14456, "atom2_serNum": 14667, "donAcc_type": "standard", "distance": 3.715, "atom1_id": "///A/675/O4'", "atom2_id": "///A/684/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1455, "atom1_serNum": 14460, "atom2_serNum": 14680, "donAcc_type": "acceptable", "distance": 2.860, "atom1_id": "///A/675/O2'", "atom2_id": "///A/685/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1456, "atom1_serNum": 14460, "atom2_serNum": 14905, "donAcc_type": "acceptable", "distance": 3.339, "atom1_id": "///A/675/O2'", "atom2_id": "///A/695/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1457, "atom1_serNum": 14464, "atom2_serNum": 14579, "donAcc_type": "standard", "distance": 2.776, "atom1_id": "///A/675/O2", "atom2_id": "///A/680/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1458, "atom1_serNum": 14464, "atom2_serNum": 14680, "donAcc_type": "acceptable", "distance": 2.555, "atom1_id": "///A/675/O2", "atom2_id": "///A/685/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1459, "atom1_serNum": 14465, "atom2_serNum": 14577, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///A/675/N3", "atom2_id": "///A/680/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1460, "atom1_serNum": 14467, "atom2_serNum": 14576, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///A/675/N4", "atom2_id": "///A/680/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1461, "atom1_serNum": 14480, "atom2_serNum": 14529, "donAcc_type": "acceptable", "distance": 3.335, "atom1_id": "///A/676/O2'", "atom2_id": "///A/678/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1462, "atom1_serNum": 14488, "atom2_serNum": 14539, "donAcc_type": "standard", "distance": 3.000, "atom1_id": "///A/676/N1", "atom2_id": "///A/679/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1463, "atom1_serNum": 14490, "atom2_serNum": 14539, "donAcc_type": "standard", "distance": 2.290, "atom1_id": "///A/676/N2", "atom2_id": "///A/679/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1464, "atom1_serNum": 14490, "atom2_serNum": 14551, "donAcc_type": "standard", "distance": 3.278, "atom1_id": "///A/676/N2", "atom2_id": "///A/679/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1465, "atom1_serNum": 14503, "atom2_serNum": 67482, "donAcc_type": "acceptable", "distance": 2.908, "atom1_id": "///A/677/O2'", "atom2_id": "///I/66/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1466, "atom1_serNum": 14525, "atom2_serNum": 14543, "donAcc_type": "acceptable", "distance": 3.053, "atom1_id": "///A/678/O2'", "atom2_id": "///A/679/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1467, "atom1_serNum": 14525, "atom2_serNum": 48043, "donAcc_type": "acceptable", "distance": 3.151, "atom1_id": "///A/678/O2'", "atom2_id": "///A/2432/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1468, "atom1_serNum": 14535, "atom2_serNum": 48043, "donAcc_type": "acceptable", "distance": 2.474, "atom1_id": "///A/678/N3", "atom2_id": "///A/2432/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1469, "atom1_serNum": 14543, "atom2_serNum": 48043, "donAcc_type": "acceptable", "distance": 3.505, "atom1_id": "///A/679/O4'", "atom2_id": "///A/2432/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1470, "atom1_serNum": 14547, "atom2_serNum": 48041, "donAcc_type": "acceptable", "distance": 3.514, "atom1_id": "///A/679/O2'", "atom2_id": "///A/2432/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1471, "atom1_serNum": 14547, "atom2_serNum": 48054, "donAcc_type": "acceptable", "distance": 2.194, "atom1_id": "///A/679/O2'", "atom2_id": "///A/2433/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1472, "atom1_serNum": 14579, "atom2_serNum": 14678, "donAcc_type": "standard", "distance": 3.721, "atom1_id": "///A/680/N2", "atom2_id": "///A/685/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1473, "atom1_serNum": 14592, "atom2_serNum": 14671, "donAcc_type": "acceptable", "distance": 2.937, "atom1_id": "///A/681/O2'", "atom2_id": "///A/685/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1474, "atom1_serNum": 14603, "atom2_serNum": 67953, "donAcc_type": "standard", "distance": 2.717, "atom1_id": "///A/682/OP1", "atom2_id": "///I/132/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1475, "atom1_serNum": 14604, "atom2_serNum": 67953, "donAcc_type": "standard", "distance": 2.567, "atom1_id": "///A/682/OP2", "atom2_id": "///I/132/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1476, "atom1_serNum": 14612, "atom2_serNum": 14657, "donAcc_type": "acceptable", "distance": 2.500, "atom1_id": "///A/682/O2'", "atom2_id": "///A/684/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1477, "atom1_serNum": 14616, "atom2_serNum": 67816, "donAcc_type": "standard", "distance": 2.490, "atom1_id": "///A/682/N7", "atom2_id": "///I/110/NZ", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1478, "atom1_serNum": 14626, "atom2_serNum": 67833, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///A/683/OP1", "atom2_id": "///I/113/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1479, "atom1_serNum": 14626, "atom2_serNum": 67836, "donAcc_type": "questionable", "distance": 2.801, "atom1_id": "///A/683/OP1", "atom2_id": "///I/113/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1480, "atom1_serNum": 14639, "atom2_serNum": 67844, "donAcc_type": "standard", "distance": 3.183, "atom1_id": "///A/683/N7", "atom2_id": "///I/114/ND2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1481, "atom1_serNum": 14643, "atom2_serNum": 14938, "donAcc_type": "acceptable", "distance": 2.804, "atom1_id": "///A/683/N1", "atom2_id": "///A/697/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1482, "atom1_serNum": 14645, "atom2_serNum": 14948, "donAcc_type": "standard", "distance": 3.391, "atom1_id": "///A/683/N3", "atom2_id": "///A/697/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1483, "atom1_serNum": 14664, "atom2_serNum": 14925, "donAcc_type": "standard", "distance": 2.987, "atom1_id": "///A/684/O6", "atom2_id": "///A/696/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1484, "atom1_serNum": 14665, "atom2_serNum": 14923, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///A/684/N1", "atom2_id": "///A/696/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1485, "atom1_serNum": 14667, "atom2_serNum": 14922, "donAcc_type": "standard", "distance": 2.771, "atom1_id": "///A/684/N2", "atom2_id": "///A/696/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1486, "atom1_serNum": 14684, "atom2_serNum": 14903, "donAcc_type": "standard", "distance": 2.979, "atom1_id": "///A/685/O2", "atom2_id": "///A/695/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1487, "atom1_serNum": 14684, "atom2_serNum": 14905, "donAcc_type": "standard", "distance": 3.248, "atom1_id": "///A/685/O2", "atom2_id": "///A/695/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1488, "atom1_serNum": 14685, "atom2_serNum": 14902, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///A/685/N3", "atom2_id": "///A/695/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1489, "atom1_serNum": 14704, "atom2_serNum": 14882, "donAcc_type": "standard", "distance": 2.782, "atom1_id": "///A/686/O2", "atom2_id": "///A/694/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1490, "atom1_serNum": 14705, "atom2_serNum": 14880, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///A/686/N3", "atom2_id": "///A/694/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1491, "atom1_serNum": 14707, "atom2_serNum": 14879, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///A/686/N4", "atom2_id": "///A/694/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1492, "atom1_serNum": 14707, "atom2_serNum": 14902, "donAcc_type": "standard", "distance": 2.403, "atom1_id": "///A/686/N4", "atom2_id": "///A/695/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1493, "atom1_serNum": 14720, "atom2_serNum": 14731, "donAcc_type": "acceptable", "distance": 2.299, "atom1_id": "///A/687/O2'", "atom2_id": "///A/688/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1494, "atom1_serNum": 14720, "atom2_serNum": 14733, "donAcc_type": "acceptable", "distance": 3.024, "atom1_id": "///A/687/O2'", "atom2_id": "///A/688/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1495, "atom1_serNum": 14720, "atom2_serNum": 14736, "donAcc_type": "acceptable", "distance": 2.311, "atom1_id": "///A/687/O2'", "atom2_id": "///A/688/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1496, "atom1_serNum": 14724, "atom2_serNum": 14857, "donAcc_type": "standard", "distance": 3.162, "atom1_id": "///A/687/O2", "atom2_id": "///A/693/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1497, "atom1_serNum": 14725, "atom2_serNum": 14856, "donAcc_type": "standard", "distance": 3.032, "atom1_id": "///A/687/N3", "atom2_id": "///A/693/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1498, "atom1_serNum": 14727, "atom2_serNum": 14879, "donAcc_type": "questionable", "distance": 2.707, "atom1_id": "///A/687/O4", "atom2_id": "///A/694/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1499, "atom1_serNum": 14740, "atom2_serNum": 14789, "donAcc_type": "acceptable", "distance": 2.972, "atom1_id": "///A/688/O2'", "atom2_id": "///A/690/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1500, "atom1_serNum": 14750, "atom2_serNum": 14856, "donAcc_type": "standard", "distance": 2.130, "atom1_id": "///A/688/N2", "atom2_id": "///A/693/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1501, "atom1_serNum": 14751, "atom2_serNum": 14834, "donAcc_type": "standard", "distance": 3.593, "atom1_id": "///A/688/N3", "atom2_id": "///A/692/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1502, "atom1_serNum": 14763, "atom2_serNum": 14776, "donAcc_type": "acceptable", "distance": 2.581, "atom1_id": "///A/689/O2'", "atom2_id": "///A/690/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1503, "atom1_serNum": 14770, "atom2_serNum": 47317, "donAcc_type": "standard", "distance": 3.701, "atom1_id": "///A/689/N6", "atom2_id": "///A/2398/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1504, "atom1_serNum": 14792, "atom2_serNum": 46877, "donAcc_type": "acceptable", "distance": 3.248, "atom1_id": "///A/690/N6", "atom2_id": "///A/2378/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1505, "atom1_serNum": 14792, "atom2_serNum": 46888, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///A/690/N6", "atom2_id": "///A/2378/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1506, "atom1_serNum": 14793, "atom2_serNum": 46887, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/690/N1", "atom2_id": "///A/2378/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1507, "atom1_serNum": 14799, "atom2_serNum": 14831, "donAcc_type": "questionable", "distance": 2.839, "atom1_id": "///A/691/OP2", "atom2_id": "///A/692/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1508, "atom1_serNum": 14837, "atom2_serNum": 46887, "donAcc_type": "standard", "distance": 2.421, "atom1_id": "///A/692/N3", "atom2_id": "///A/2378/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1509, "atom1_serNum": 14849, "atom2_serNum": 46900, "donAcc_type": "acceptable", "distance": 3.481, "atom1_id": "///A/693/O2'", "atom2_id": "///A/2379/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1510, "atom1_serNum": 14872, "atom2_serNum": 46911, "donAcc_type": "acceptable", "distance": 3.537, "atom1_id": "///A/694/O2'", "atom2_id": "///A/2380/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1511, "atom1_serNum": 14973, "atom2_serNum": 15003, "donAcc_type": "acceptable", "distance": 2.777, "atom1_id": "///A/699/OP2", "atom2_id": "///A/700/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1512, "atom1_serNum": 15046, "atom2_serNum": 15072, "donAcc_type": "acceptable", "distance": 2.988, "atom1_id": "///A/702/O2'", "atom2_id": "///A/703/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1513, "atom1_serNum": 15111, "atom2_serNum": 15126, "donAcc_type": "acceptable", "distance": 2.912, "atom1_id": "///A/705/O2'", "atom2_id": "///A/706/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1514, "atom1_serNum": 15133, "atom2_serNum": 63950, "donAcc_type": "acceptable", "distance": 3.609, "atom1_id": "///A/706/O2'", "atom2_id": "///E/100/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1515, "atom1_serNum": 15163, "atom2_serNum": 67287, "donAcc_type": "standard", "distance": 3.652, "atom1_id": "///A/707/N2", "atom2_id": "///I/12/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1516, "atom1_serNum": 15176, "atom2_serNum": 67301, "donAcc_type": "acceptable", "distance": 3.295, "atom1_id": "///A/708/O2'", "atom2_id": "///I/14/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1517, "atom1_serNum": 15210, "atom2_serNum": 67328, "donAcc_type": "standard", "distance": 3.333, "atom1_id": "///A/710/OP1", "atom2_id": "///I/17/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1518, "atom1_serNum": 15229, "atom2_serNum": 20656, "donAcc_type": "standard", "distance": 3.794, "atom1_id": "///A/710/N2", "atom2_id": "///A/986/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1519, "atom1_serNum": 15240, "atom2_serNum": 20679, "donAcc_type": "questionable", "distance": 3.020, "atom1_id": "///A/711/O3'", "atom2_id": "///A/987/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1520, "atom1_serNum": 15242, "atom2_serNum": 20656, "donAcc_type": "acceptable", "distance": 3.301, "atom1_id": "///A/711/O2'", "atom2_id": "///A/986/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1521, "atom1_serNum": 15242, "atom2_serNum": 20679, "donAcc_type": "acceptable", "distance": 3.123, "atom1_id": "///A/711/O2'", "atom2_id": "///A/987/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1522, "atom1_serNum": 15347, "atom2_serNum": 18193, "donAcc_type": "acceptable", "distance": 3.569, "atom1_id": "///A/716/O2'", "atom2_id": "///A/848/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1523, "atom1_serNum": 15370, "atom2_serNum": 15384, "donAcc_type": "acceptable", "distance": 3.037, "atom1_id": "///A/717/O2'", "atom2_id": "///A/718/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1524, "atom1_serNum": 15392, "atom2_serNum": 15404, "donAcc_type": "acceptable", "distance": 2.702, "atom1_id": "///A/718/O2'", "atom2_id": "///A/719/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1525, "atom1_serNum": 15392, "atom2_serNum": 15405, "donAcc_type": "acceptable", "distance": 2.663, "atom1_id": "///A/718/O2'", "atom2_id": "///A/719/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1526, "atom1_serNum": 15396, "atom2_serNum": 18376, "donAcc_type": "standard", "distance": 2.802, "atom1_id": "///A/718/O2", "atom2_id": "///A/856/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1527, "atom1_serNum": 15397, "atom2_serNum": 18374, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///A/718/N3", "atom2_id": "///A/856/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1528, "atom1_serNum": 15399, "atom2_serNum": 18373, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///A/718/N4", "atom2_id": "///A/856/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1529, "atom1_serNum": 15416, "atom2_serNum": 18353, "donAcc_type": "standard", "distance": 2.815, "atom1_id": "///A/719/O2", "atom2_id": "///A/855/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1530, "atom1_serNum": 15417, "atom2_serNum": 18351, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///A/719/N3", "atom2_id": "///A/855/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1531, "atom1_serNum": 15419, "atom2_serNum": 18350, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///A/719/N4", "atom2_id": "///A/855/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1532, "atom1_serNum": 15423, "atom2_serNum": 63625, "donAcc_type": "standard", "distance": 2.441, "atom1_id": "///A/720/OP1", "atom2_id": "///E/54/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1533, "atom1_serNum": 15425, "atom2_serNum": 63625, "donAcc_type": "standard", "distance": 3.235, "atom1_id": "///A/720/O5'", "atom2_id": "///E/54/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1534, "atom1_serNum": 15439, "atom2_serNum": 18330, "donAcc_type": "standard", "distance": 3.452, "atom1_id": "///A/720/N4", "atom2_id": "///A/854/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1535, "atom1_serNum": 15443, "atom2_serNum": 63626, "donAcc_type": "standard", "distance": 2.590, "atom1_id": "///A/721/OP1", "atom2_id": "///E/54/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1536, "atom1_serNum": 15444, "atom2_serNum": 63625, "donAcc_type": "standard", "distance": 3.479, "atom1_id": "///A/721/OP2", "atom2_id": "///E/54/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1537, "atom1_serNum": 15459, "atom2_serNum": 18310, "donAcc_type": "standard", "distance": 3.683, "atom1_id": "///A/721/O6", "atom2_id": "///A/853/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1538, "atom1_serNum": 15460, "atom2_serNum": 18308, "donAcc_type": "standard", "distance": 3.305, "atom1_id": "///A/721/N1", "atom2_id": "///A/853/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1539, "atom1_serNum": 15462, "atom2_serNum": 18307, "donAcc_type": "standard", "distance": 3.018, "atom1_id": "///A/721/N2", "atom2_id": "///A/853/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1540, "atom1_serNum": 15479, "atom2_serNum": 18243, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///A/722/N7", "atom2_id": "///A/850/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1541, "atom1_serNum": 15482, "atom2_serNum": 18242, "donAcc_type": "standard", "distance": 3.008, "atom1_id": "///A/722/N6", "atom2_id": "///A/850/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1542, "atom1_serNum": 15485, "atom2_serNum": 48897, "donAcc_type": "acceptable", "distance": 3.093, "atom1_id": "///A/722/N3", "atom2_id": "///A/2472/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1543, "atom1_serNum": 15488, "atom2_serNum": 63691, "donAcc_type": "standard", "distance": 3.110, "atom1_id": "///A/723/OP1", "atom2_id": "///E/63/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1544, "atom1_serNum": 15497, "atom2_serNum": 48877, "donAcc_type": "acceptable", "distance": 2.464, "atom1_id": "///A/723/O2'", "atom2_id": "///A/2471/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1545, "atom1_serNum": 15497, "atom2_serNum": 48881, "donAcc_type": "acceptable", "distance": 3.070, "atom1_id": "///A/723/O2'", "atom2_id": "///A/2471/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1546, "atom1_serNum": 15501, "atom2_serNum": 18223, "donAcc_type": "standard", "distance": 3.465, "atom1_id": "///A/723/N7", "atom2_id": "///A/849/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1547, "atom1_serNum": 15504, "atom2_serNum": 18224, "donAcc_type": "standard", "distance": 2.801, "atom1_id": "///A/723/N6", "atom2_id": "///A/849/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1548, "atom1_serNum": 15507, "atom2_serNum": 41363, "donAcc_type": "standard", "distance": 3.439, "atom1_id": "///A/723/N3", "atom2_id": "///A/2098/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1549, "atom1_serNum": 15519, "atom2_serNum": 41376, "donAcc_type": "acceptable", "distance": 2.381, "atom1_id": "///A/724/O2'", "atom2_id": "///A/2099/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1550, "atom1_serNum": 15526, "atom2_serNum": 18179, "donAcc_type": "standard", "distance": 3.003, "atom1_id": "///A/724/N6", "atom2_id": "///A/847/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1551, "atom1_serNum": 15541, "atom2_serNum": 15557, "donAcc_type": "acceptable", "distance": 3.165, "atom1_id": "///A/725/O2'", "atom2_id": "///A/726/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1552, "atom1_serNum": 15545, "atom2_serNum": 18158, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///A/725/O2", "atom2_id": "///A/846/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1553, "atom1_serNum": 15546, "atom2_serNum": 18156, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///A/725/N3", "atom2_id": "///A/846/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1554, "atom1_serNum": 15548, "atom2_serNum": 18155, "donAcc_type": "standard", "distance": 2.973, "atom1_id": "///A/725/N4", "atom2_id": "///A/846/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1555, "atom1_serNum": 15561, "atom2_serNum": 15577, "donAcc_type": "acceptable", "distance": 3.106, "atom1_id": "///A/726/O2'", "atom2_id": "///A/727/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1556, "atom1_serNum": 15565, "atom2_serNum": 18135, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///A/726/O2", "atom2_id": "///A/845/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1557, "atom1_serNum": 15566, "atom2_serNum": 18133, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///A/726/N3", "atom2_id": "///A/845/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1558, "atom1_serNum": 15568, "atom2_serNum": 18132, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///A/726/N4", "atom2_id": "///A/845/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1559, "atom1_serNum": 15573, "atom2_serNum": 17663, "donAcc_type": "standard", "distance": 3.465, "atom1_id": "///A/727/OP2", "atom2_id": "///A/823/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1560, "atom1_serNum": 15588, "atom2_serNum": 18112, "donAcc_type": "standard", "distance": 3.147, "atom1_id": "///A/727/N6", "atom2_id": "///A/844/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1561, "atom1_serNum": 15589, "atom2_serNum": 18110, "donAcc_type": "standard", "distance": 3.305, "atom1_id": "///A/727/N1", "atom2_id": "///A/844/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1562, "atom1_serNum": 15610, "atom2_serNum": 18092, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/728/O6", "atom2_id": "///A/843/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1563, "atom1_serNum": 15611, "atom2_serNum": 18090, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///A/728/N1", "atom2_id": "///A/843/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1564, "atom1_serNum": 15613, "atom2_serNum": 18089, "donAcc_type": "standard", "distance": 2.814, "atom1_id": "///A/728/N2", "atom2_id": "///A/843/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1565, "atom1_serNum": 15633, "atom2_serNum": 18072, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/729/O6", "atom2_id": "///A/842/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1566, "atom1_serNum": 15634, "atom2_serNum": 18070, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///A/729/N1", "atom2_id": "///A/842/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1567, "atom1_serNum": 15636, "atom2_serNum": 18069, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///A/729/N2", "atom2_id": "///A/842/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1568, "atom1_serNum": 15654, "atom2_serNum": 18051, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///A/730/N3", "atom2_id": "///A/841/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1569, "atom1_serNum": 15656, "atom2_serNum": 18050, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///A/730/O4", "atom2_id": "///A/841/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1570, "atom1_serNum": 15660, "atom2_serNum": 75658, "donAcc_type": "acceptable", "distance": 3.455, "atom1_id": "///A/731/OP1", "atom2_id": "///U/16/ND1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1571, "atom1_serNum": 15660, "atom2_serNum": 75704, "donAcc_type": "standard", "distance": 3.900, "atom1_id": "///A/731/OP1", "atom2_id": "///U/21/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1572, "atom1_serNum": 15667, "atom2_serNum": 17921, "donAcc_type": "standard", "distance": 3.644, "atom1_id": "///A/731/O3'", "atom2_id": "///A/835/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1573, "atom1_serNum": 15669, "atom2_serNum": 17918, "donAcc_type": "acceptable", "distance": 3.125, "atom1_id": "///A/731/O2'", "atom2_id": "///A/835/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1574, "atom1_serNum": 15677, "atom2_serNum": 17634, "donAcc_type": "standard", "distance": 3.080, "atom1_id": "///A/731/N1", "atom2_id": "///A/822/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1575, "atom1_serNum": 15679, "atom2_serNum": 17637, "donAcc_type": "standard", "distance": 3.256, "atom1_id": "///A/731/N2", "atom2_id": "///A/822/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1576, "atom1_serNum": 15679, "atom2_serNum": 17906, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///A/731/N2", "atom2_id": "///A/835/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1577, "atom1_serNum": 15688, "atom2_serNum": 15741, "donAcc_type": "standard", "distance": 3.635, "atom1_id": "///A/732/O4'", "atom2_id": "///A/734/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1578, "atom1_serNum": 15692, "atom2_serNum": 17595, "donAcc_type": "acceptable", "distance": 2.474, "atom1_id": "///A/732/O2'", "atom2_id": "///A/820/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1579, "atom1_serNum": 15699, "atom2_serNum": 17710, "donAcc_type": "standard", "distance": 3.595, "atom1_id": "///A/732/N6", "atom2_id": "///A/825/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1580, "atom1_serNum": 15706, "atom2_serNum": 75618, "donAcc_type": "standard", "distance": 3.194, "atom1_id": "///A/733/OP2", "atom2_id": "///U/11/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1581, "atom1_serNum": 15707, "atom2_serNum": 75618, "donAcc_type": "standard", "distance": 2.755, "atom1_id": "///A/733/O5'", "atom2_id": "///U/11/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1582, "atom1_serNum": 15714, "atom2_serNum": 15718, "donAcc_type": "acceptable", "distance": 2.680, "atom1_id": "///A/733/O2'", "atom2_id": "///A/733/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1583, "atom1_serNum": 15714, "atom2_serNum": 75552, "donAcc_type": "acceptable", "distance": 2.626, "atom1_id": "///A/733/O2'", "atom2_id": "///U/4/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1584, "atom1_serNum": 15718, "atom2_serNum": 75567, "donAcc_type": "standard", "distance": 3.229, "atom1_id": "///A/733/O2", "atom2_id": "///U/6/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1585, "atom1_serNum": 15721, "atom2_serNum": 75628, "donAcc_type": "standard", "distance": 3.411, "atom1_id": "///A/733/O4", "atom2_id": "///U/12/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1586, "atom1_serNum": 15734, "atom2_serNum": 37210, "donAcc_type": "acceptable", "distance": 3.521, "atom1_id": "///A/734/O2'", "atom2_id": "///A/1809/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1587, "atom1_serNum": 15738, "atom2_serNum": 37209, "donAcc_type": "standard", "distance": 3.246, "atom1_id": "///A/734/O2", "atom2_id": "///A/1809/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1588, "atom1_serNum": 15758, "atom2_serNum": 17874, "donAcc_type": "acceptable", "distance": 3.454, "atom1_id": "///A/735/O2", "atom2_id": "///A/833/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1589, "atom1_serNum": 15774, "atom2_serNum": 17722, "donAcc_type": "acceptable", "distance": 2.608, "atom1_id": "///A/736/O2'", "atom2_id": "///A/826/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1590, "atom1_serNum": 15781, "atom2_serNum": 17595, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///A/736/N6", "atom2_id": "///A/820/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1591, "atom1_serNum": 15782, "atom2_serNum": 17593, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///A/736/N1", "atom2_id": "///A/820/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1592, "atom1_serNum": 15784, "atom2_serNum": 17722, "donAcc_type": "acceptable", "distance": 3.311, "atom1_id": "///A/736/N3", "atom2_id": "///A/826/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1593, "atom1_serNum": 15792, "atom2_serNum": 17722, "donAcc_type": "acceptable", "distance": 3.360, "atom1_id": "///A/737/O4'", "atom2_id": "///A/826/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1594, "atom1_serNum": 15796, "atom2_serNum": 17733, "donAcc_type": "acceptable", "distance": 2.977, "atom1_id": "///A/737/O2'", "atom2_id": "///A/827/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1595, "atom1_serNum": 15796, "atom2_serNum": 60218, "donAcc_type": "acceptable", "distance": 3.348, "atom1_id": "///A/737/O2'", "atom2_id": "///C/43/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1596, "atom1_serNum": 15800, "atom2_serNum": 17575, "donAcc_type": "standard", "distance": 2.749, "atom1_id": "///A/737/O2", "atom2_id": "///A/819/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1597, "atom1_serNum": 15801, "atom2_serNum": 17573, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/737/N3", "atom2_id": "///A/819/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1598, "atom1_serNum": 15803, "atom2_serNum": 17572, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///A/737/N4", "atom2_id": "///A/819/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1599, "atom1_serNum": 15807, "atom2_serNum": 61511, "donAcc_type": "standard", "distance": 3.021, "atom1_id": "///A/738/OP1", "atom2_id": "///C/217/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1600, "atom1_serNum": 15807, "atom2_serNum": 61514, "donAcc_type": "standard", "distance": 2.659, "atom1_id": "///A/738/OP1", "atom2_id": "///C/217/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1601, "atom1_serNum": 15820, "atom2_serNum": 17552, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///A/738/O2", "atom2_id": "///A/818/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1602, "atom1_serNum": 15821, "atom2_serNum": 17550, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///A/738/N3", "atom2_id": "///A/818/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1603, "atom1_serNum": 15823, "atom2_serNum": 17549, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///A/738/N4", "atom2_id": "///A/818/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1604, "atom1_serNum": 15827, "atom2_serNum": 60313, "donAcc_type": "standard", "distance": 3.227, "atom1_id": "///A/739/OP1", "atom2_id": "///C/56/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1605, "atom1_serNum": 15836, "atom2_serNum": 28261, "donAcc_type": "acceptable", "distance": 3.045, "atom1_id": "///A/739/O2'", "atom2_id": "///A/1393/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1606, "atom1_serNum": 15840, "atom2_serNum": 17529, "donAcc_type": "standard", "distance": 2.786, "atom1_id": "///A/739/O2", "atom2_id": "///A/817/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1607, "atom1_serNum": 15840, "atom2_serNum": 28261, "donAcc_type": "acceptable", "distance": 3.291, "atom1_id": "///A/739/O2", "atom2_id": "///A/1393/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1608, "atom1_serNum": 15841, "atom2_serNum": 17527, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///A/739/N3", "atom2_id": "///A/817/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1609, "atom1_serNum": 15843, "atom2_serNum": 17526, "donAcc_type": "standard", "distance": 2.959, "atom1_id": "///A/739/N4", "atom2_id": "///A/817/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1610, "atom1_serNum": 15847, "atom2_serNum": 60190, "donAcc_type": "standard", "distance": 3.041, "atom1_id": "///A/740/OP1", "atom2_id": "///C/39/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1611, "atom1_serNum": 15848, "atom2_serNum": 60190, "donAcc_type": "standard", "distance": 2.621, "atom1_id": "///A/740/OP2", "atom2_id": "///C/39/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1612, "atom1_serNum": 15852, "atom2_serNum": 28257, "donAcc_type": "questionable", "distance": 3.342, "atom1_id": "///A/740/O4'", "atom2_id": "///A/1393/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1613, "atom1_serNum": 15856, "atom2_serNum": 28249, "donAcc_type": "acceptable", "distance": 2.772, "atom1_id": "///A/740/O2'", "atom2_id": "///A/1392/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1614, "atom1_serNum": 15863, "atom2_serNum": 17506, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///A/740/N6", "atom2_id": "///A/816/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1615, "atom1_serNum": 15864, "atom2_serNum": 17504, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///A/740/N1", "atom2_id": "///A/816/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1616, "atom1_serNum": 15869, "atom2_serNum": 60339, "donAcc_type": "standard", "distance": 2.987, "atom1_id": "///A/741/OP1", "atom2_id": "///C/59/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1617, "atom1_serNum": 15878, "atom2_serNum": 28824, "donAcc_type": "acceptable", "distance": 3.583, "atom1_id": "///A/741/O2'", "atom2_id": "///A/1419/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1618, "atom1_serNum": 15882, "atom2_serNum": 17484, "donAcc_type": "standard", "distance": 3.007, "atom1_id": "///A/741/O2", "atom2_id": "///A/815/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1619, "atom1_serNum": 15883, "atom2_serNum": 17483, "donAcc_type": "standard", "distance": 2.996, "atom1_id": "///A/741/N3", "atom2_id": "///A/815/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1620, "atom1_serNum": 15889, "atom2_serNum": 28828, "donAcc_type": "acceptable", "distance": 2.779, "atom1_id": "///A/742/OP1", "atom2_id": "///A/1419/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1621, "atom1_serNum": 15905, "atom2_serNum": 17461, "donAcc_type": "standard", "distance": 3.018, "atom1_id": "///A/742/O6", "atom2_id": "///A/814/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1622, "atom1_serNum": 15906, "atom2_serNum": 17460, "donAcc_type": "standard", "distance": 2.998, "atom1_id": "///A/742/N1", "atom2_id": "///A/814/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1623, "atom1_serNum": 15925, "atom2_serNum": 17441, "donAcc_type": "standard", "distance": 2.940, "atom1_id": "///A/743/O2", "atom2_id": "///A/813/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1624, "atom1_serNum": 15926, "atom2_serNum": 17440, "donAcc_type": "standard", "distance": 2.994, "atom1_id": "///A/743/N3", "atom2_id": "///A/813/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1625, "atom1_serNum": 15945, "atom2_serNum": 17420, "donAcc_type": "standard", "distance": 2.841, "atom1_id": "///A/744/O2", "atom2_id": "///A/812/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1626, "atom1_serNum": 15946, "atom2_serNum": 17418, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///A/744/N3", "atom2_id": "///A/812/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1627, "atom1_serNum": 15948, "atom2_serNum": 17417, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///A/744/N4", "atom2_id": "///A/812/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1628, "atom1_serNum": 15961, "atom2_serNum": 16747, "donAcc_type": "acceptable", "distance": 2.778, "atom1_id": "///A/745/O2'", "atom2_id": "///A/781/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1629, "atom1_serNum": 15965, "atom2_serNum": 17375, "donAcc_type": "standard", "distance": 2.793, "atom1_id": "///A/745/O2", "atom2_id": "///A/810/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1630, "atom1_serNum": 15966, "atom2_serNum": 17373, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///A/745/N3", "atom2_id": "///A/810/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1631, "atom1_serNum": 15968, "atom2_serNum": 17372, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///A/745/N4", "atom2_id": "///A/810/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1632, "atom1_serNum": 15985, "atom2_serNum": 16727, "donAcc_type": "standard", "distance": 3.117, "atom1_id": "///A/746/N7", "atom2_id": "///A/780/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1633, "atom1_serNum": 15988, "atom2_serNum": 16728, "donAcc_type": "standard", "distance": 3.122, "atom1_id": "///A/746/N6", "atom2_id": "///A/780/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1634, "atom1_serNum": 15991, "atom2_serNum": 34386, "donAcc_type": "acceptable", "distance": 2.848, "atom1_id": "///A/746/N3", "atom2_id": "///A/1678/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1635, "atom1_serNum": 16003, "atom2_serNum": 34364, "donAcc_type": "acceptable", "distance": 3.412, "atom1_id": "///A/747/O2'", "atom2_id": "///A/1677/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1636, "atom1_serNum": 16010, "atom2_serNum": 16704, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///A/747/O6", "atom2_id": "///A/779/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1637, "atom1_serNum": 16011, "atom2_serNum": 16702, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///A/747/N1", "atom2_id": "///A/779/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1638, "atom1_serNum": 16013, "atom2_serNum": 16701, "donAcc_type": "standard", "distance": 2.811, "atom1_id": "///A/747/N2", "atom2_id": "///A/779/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1639, "atom1_serNum": 16033, "atom2_serNum": 16684, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///A/748/O6", "atom2_id": "///A/778/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1640, "atom1_serNum": 16034, "atom2_serNum": 16682, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/748/N1", "atom2_id": "///A/778/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1641, "atom1_serNum": 16036, "atom2_serNum": 16681, "donAcc_type": "standard", "distance": 2.755, "atom1_id": "///A/748/N2", "atom2_id": "///A/778/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1642, "atom1_serNum": 16056, "atom2_serNum": 16664, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///A/749/O6", "atom2_id": "///A/777/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1643, "atom1_serNum": 16057, "atom2_serNum": 16662, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///A/749/N1", "atom2_id": "///A/777/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1644, "atom1_serNum": 16059, "atom2_serNum": 16661, "donAcc_type": "standard", "distance": 2.850, "atom1_id": "///A/749/N2", "atom2_id": "///A/777/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1645, "atom1_serNum": 16076, "atom2_serNum": 16619, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///A/750/O2", "atom2_id": "///A/775/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1646, "atom1_serNum": 16077, "atom2_serNum": 16618, "donAcc_type": "standard", "distance": 2.705, "atom1_id": "///A/750/N3", "atom2_id": "///A/775/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1647, "atom1_serNum": 16092, "atom2_serNum": 16107, "donAcc_type": "acceptable", "distance": 2.550, "atom1_id": "///A/751/O2'", "atom2_id": "///A/752/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1648, "atom1_serNum": 16092, "atom2_serNum": 16574, "donAcc_type": "acceptable", "distance": 3.107, "atom1_id": "///A/751/O2'", "atom2_id": "///A/773/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1649, "atom1_serNum": 16092, "atom2_serNum": 16576, "donAcc_type": "acceptable", "distance": 2.518, "atom1_id": "///A/751/O2'", "atom2_id": "///A/773/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1650, "atom1_serNum": 16102, "atom2_serNum": 16566, "donAcc_type": "acceptable", "distance": 2.924, "atom1_id": "///A/751/N2", "atom2_id": "///A/773/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1651, "atom1_serNum": 16102, "atom2_serNum": 16593, "donAcc_type": "standard", "distance": 3.159, "atom1_id": "///A/751/N2", "atom2_id": "///A/774/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1652, "atom1_serNum": 16103, "atom2_serNum": 16596, "donAcc_type": "standard", "distance": 3.275, "atom1_id": "///A/751/N3", "atom2_id": "///A/774/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1653, "atom1_serNum": 16107, "atom2_serNum": 16553, "donAcc_type": "standard", "distance": 3.413, "atom1_id": "///A/752/OP2", "atom2_id": "///A/772/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1654, "atom1_serNum": 16107, "atom2_serNum": 16576, "donAcc_type": "standard", "distance": 3.298, "atom1_id": "///A/752/OP2", "atom2_id": "///A/773/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1655, "atom1_serNum": 16119, "atom2_serNum": 16576, "donAcc_type": "standard", "distance": 2.855, "atom1_id": "///A/752/N7", "atom2_id": "///A/773/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1656, "atom1_serNum": 16122, "atom2_serNum": 16577, "donAcc_type": "standard", "distance": 3.107, "atom1_id": "///A/752/N6", "atom2_id": "///A/773/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1657, "atom1_serNum": 16128, "atom2_serNum": 59946, "donAcc_type": "standard", "distance": 3.563, "atom1_id": "///A/753/OP1", "atom2_id": "///C/7/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1658, "atom1_serNum": 16141, "atom2_serNum": 16553, "donAcc_type": "standard", "distance": 3.077, "atom1_id": "///A/753/N7", "atom2_id": "///A/772/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1659, "atom1_serNum": 16144, "atom2_serNum": 16543, "donAcc_type": "acceptable", "distance": 2.806, "atom1_id": "///A/753/N6", "atom2_id": "///A/772/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1660, "atom1_serNum": 16144, "atom2_serNum": 16554, "donAcc_type": "standard", "distance": 2.846, "atom1_id": "///A/753/N6", "atom2_id": "///A/772/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1661, "atom1_serNum": 16166, "atom2_serNum": 16528, "donAcc_type": "standard", "distance": 2.976, "atom1_id": "///A/754/O6", "atom2_id": "///A/771/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1662, "atom1_serNum": 16167, "atom2_serNum": 16527, "donAcc_type": "standard", "distance": 2.824, "atom1_id": "///A/754/N1", "atom2_id": "///A/771/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1663, "atom1_serNum": 16169, "atom2_serNum": 16527, "donAcc_type": "standard", "distance": 2.536, "atom1_id": "///A/754/N2", "atom2_id": "///A/771/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1664, "atom1_serNum": 16187, "atom2_serNum": 16509, "donAcc_type": "standard", "distance": 2.741, "atom1_id": "///A/755/N3", "atom2_id": "///A/770/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1665, "atom1_serNum": 16189, "atom2_serNum": 16508, "donAcc_type": "standard", "distance": 2.968, "atom1_id": "///A/755/O4", "atom2_id": "///A/770/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1666, "atom1_serNum": 16207, "atom2_serNum": 16487, "donAcc_type": "standard", "distance": 2.792, "atom1_id": "///A/756/N3", "atom2_id": "///A/769/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1667, "atom1_serNum": 16209, "atom2_serNum": 16486, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///A/756/O4", "atom2_id": "///A/769/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1668, "atom1_serNum": 16226, "atom2_serNum": 16466, "donAcc_type": "standard", "distance": 2.717, "atom1_id": "///A/757/O2", "atom2_id": "///A/768/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1669, "atom1_serNum": 16227, "atom2_serNum": 16464, "donAcc_type": "standard", "distance": 2.859, "atom1_id": "///A/757/N3", "atom2_id": "///A/768/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1670, "atom1_serNum": 16229, "atom2_serNum": 16463, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///A/757/N4", "atom2_id": "///A/768/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1671, "atom1_serNum": 16249, "atom2_serNum": 16443, "donAcc_type": "standard", "distance": 3.001, "atom1_id": "///A/758/N6", "atom2_id": "///A/767/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1672, "atom1_serNum": 16250, "atom2_serNum": 16441, "donAcc_type": "standard", "distance": 2.702, "atom1_id": "///A/758/N1", "atom2_id": "///A/767/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1673, "atom1_serNum": 16272, "atom2_serNum": 16420, "donAcc_type": "standard", "distance": 3.128, "atom1_id": "///A/759/N1", "atom2_id": "///A/766/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1674, "atom1_serNum": 16274, "atom2_serNum": 16420, "donAcc_type": "standard", "distance": 2.300, "atom1_id": "///A/759/N2", "atom2_id": "///A/766/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1675, "atom1_serNum": 16287, "atom2_serNum": 16303, "donAcc_type": "acceptable", "distance": 2.406, "atom1_id": "///A/760/O2'", "atom2_id": "///A/761/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1676, "atom1_serNum": 16287, "atom2_serNum": 16401, "donAcc_type": "acceptable", "distance": 2.971, "atom1_id": "///A/760/O2'", "atom2_id": "///A/765/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1677, "atom1_serNum": 16297, "atom2_serNum": 16402, "donAcc_type": "standard", "distance": 2.797, "atom1_id": "///A/760/N2", "atom2_id": "///A/765/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1678, "atom1_serNum": 16297, "atom2_serNum": 16421, "donAcc_type": "standard", "distance": 3.008, "atom1_id": "///A/760/N2", "atom2_id": "///A/766/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1679, "atom1_serNum": 16298, "atom2_serNum": 16401, "donAcc_type": "standard", "distance": 2.801, "atom1_id": "///A/760/N3", "atom2_id": "///A/765/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1680, "atom1_serNum": 16314, "atom2_serNum": 16402, "donAcc_type": "questionable", "distance": 3.008, "atom1_id": "///A/761/O2", "atom2_id": "///A/765/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1681, "atom1_serNum": 16386, "atom2_serNum": 16423, "donAcc_type": "standard", "distance": 3.302, "atom1_id": "///A/765/OP2", "atom2_id": "///A/766/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1682, "atom1_serNum": 16416, "atom2_serNum": 16432, "donAcc_type": "acceptable", "distance": 3.020, "atom1_id": "///A/766/O2'", "atom2_id": "///A/767/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1683, "atom1_serNum": 16436, "atom2_serNum": 16452, "donAcc_type": "acceptable", "distance": 3.172, "atom1_id": "///A/767/O2'", "atom2_id": "///A/768/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1684, "atom1_serNum": 16456, "atom2_serNum": 16475, "donAcc_type": "acceptable", "distance": 3.073, "atom1_id": "///A/768/O2'", "atom2_id": "///A/769/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1685, "atom1_serNum": 16501, "atom2_serNum": 16516, "donAcc_type": "acceptable", "distance": 3.014, "atom1_id": "///A/770/O2'", "atom2_id": "///A/771/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1686, "atom1_serNum": 16559, "atom2_serNum": 30083, "donAcc_type": "acceptable", "distance": 3.321, "atom1_id": "///A/773/O5'", "atom2_id": "///A/1478/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1687, "atom1_serNum": 16566, "atom2_serNum": 16581, "donAcc_type": "acceptable", "distance": 2.897, "atom1_id": "///A/773/O2'", "atom2_id": "///A/774/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1688, "atom1_serNum": 16580, "atom2_serNum": 30061, "donAcc_type": "acceptable", "distance": 2.744, "atom1_id": "///A/774/OP1", "atom2_id": "///A/1477/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1689, "atom1_serNum": 16580, "atom2_serNum": 30079, "donAcc_type": "questionable", "distance": 3.023, "atom1_id": "///A/774/OP1", "atom2_id": "///A/1478/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1690, "atom1_serNum": 16589, "atom2_serNum": 16603, "donAcc_type": "acceptable", "distance": 3.163, "atom1_id": "///A/774/O2'", "atom2_id": "///A/775/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1691, "atom1_serNum": 16589, "atom2_serNum": 16604, "donAcc_type": "acceptable", "distance": 2.341, "atom1_id": "///A/774/O2'", "atom2_id": "///A/775/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1692, "atom1_serNum": 16589, "atom2_serNum": 16607, "donAcc_type": "acceptable", "distance": 2.924, "atom1_id": "///A/774/O2'", "atom2_id": "///A/775/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1693, "atom1_serNum": 16625, "atom2_serNum": 59966, "donAcc_type": "acceptable", "distance": 2.762, "atom1_id": "///A/776/OP1", "atom2_id": "///C/10/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1694, "atom1_serNum": 16626, "atom2_serNum": 61431, "donAcc_type": "standard", "distance": 3.292, "atom1_id": "///A/776/OP2", "atom2_id": "///C/207/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1695, "atom1_serNum": 16627, "atom2_serNum": 61431, "donAcc_type": "standard", "distance": 2.591, "atom1_id": "///A/776/O5'", "atom2_id": "///C/207/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1696, "atom1_serNum": 16634, "atom2_serNum": 17358, "donAcc_type": "acceptable", "distance": 3.509, "atom1_id": "///A/776/O2'", "atom2_id": "///A/810/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1697, "atom1_serNum": 16638, "atom2_serNum": 61437, "donAcc_type": "standard", "distance": 3.802, "atom1_id": "///A/776/N7", "atom2_id": "///C/209/N", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1698, "atom1_serNum": 16641, "atom2_serNum": 37086, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///A/776/O6", "atom2_id": "///A/1803/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1699, "atom1_serNum": 16642, "atom2_serNum": 37084, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///A/776/N1", "atom2_id": "///A/1803/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1700, "atom1_serNum": 16644, "atom2_serNum": 37083, "donAcc_type": "standard", "distance": 2.723, "atom1_id": "///A/776/N2", "atom2_id": "///A/1803/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1701, "atom1_serNum": 16648, "atom2_serNum": 37099, "donAcc_type": "acceptable", "distance": 2.284, "atom1_id": "///A/777/OP1", "atom2_id": "///A/1804/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1702, "atom1_serNum": 16649, "atom2_serNum": 17314, "donAcc_type": "questionable", "distance": 3.183, "atom1_id": "///A/777/OP2", "atom2_id": "///A/808/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1703, "atom1_serNum": 16669, "atom2_serNum": 17314, "donAcc_type": "questionable", "distance": 3.076, "atom1_id": "///A/778/OP2", "atom2_id": "///A/808/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1704, "atom1_serNum": 16732, "atom2_serNum": 17330, "donAcc_type": "standard", "distance": 3.420, "atom1_id": "///A/781/OP2", "atom2_id": "///A/808/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1705, "atom1_serNum": 16754, "atom2_serNum": 16791, "donAcc_type": "standard", "distance": 3.124, "atom1_id": "///A/782/OP2", "atom2_id": "///A/783/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1706, "atom1_serNum": 16788, "atom2_serNum": 17310, "donAcc_type": "standard", "distance": 2.806, "atom1_id": "///A/783/O2", "atom2_id": "///A/807/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1707, "atom1_serNum": 16789, "atom2_serNum": 17308, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///A/783/N3", "atom2_id": "///A/807/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1708, "atom1_serNum": 16791, "atom2_serNum": 17307, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///A/783/N4", "atom2_id": "///A/807/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1709, "atom1_serNum": 16808, "atom2_serNum": 17287, "donAcc_type": "standard", "distance": 2.760, "atom1_id": "///A/784/O2", "atom2_id": "///A/806/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1710, "atom1_serNum": 16809, "atom2_serNum": 17285, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///A/784/N3", "atom2_id": "///A/806/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1711, "atom1_serNum": 16811, "atom2_serNum": 17284, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///A/784/N4", "atom2_id": "///A/806/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1712, "atom1_serNum": 16824, "atom2_serNum": 16835, "donAcc_type": "acceptable", "distance": 2.100, "atom1_id": "///A/785/O2'", "atom2_id": "///A/786/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1713, "atom1_serNum": 16828, "atom2_serNum": 17264, "donAcc_type": "standard", "distance": 2.833, "atom1_id": "///A/785/O2", "atom2_id": "///A/805/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1714, "atom1_serNum": 16829, "atom2_serNum": 17262, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///A/785/N3", "atom2_id": "///A/805/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1715, "atom1_serNum": 16831, "atom2_serNum": 17261, "donAcc_type": "standard", "distance": 2.954, "atom1_id": "///A/785/N4", "atom2_id": "///A/805/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1716, "atom1_serNum": 16854, "atom2_serNum": 16873, "donAcc_type": "standard", "distance": 2.660, "atom1_id": "///A/786/N3", "atom2_id": "///A/787/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1717, "atom1_serNum": 16858, "atom2_serNum": 37258, "donAcc_type": "questionable", "distance": 3.332, "atom1_id": "///A/787/OP2", "atom2_id": "///A/1812/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1718, "atom1_serNum": 16870, "atom2_serNum": 17241, "donAcc_type": "standard", "distance": 2.741, "atom1_id": "///A/787/O2", "atom2_id": "///A/804/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1719, "atom1_serNum": 16871, "atom2_serNum": 17239, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///A/787/N3", "atom2_id": "///A/804/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1720, "atom1_serNum": 16873, "atom2_serNum": 17238, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/787/N4", "atom2_id": "///A/804/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1721, "atom1_serNum": 16886, "atom2_serNum": 35299, "donAcc_type": "acceptable", "distance": 3.048, "atom1_id": "///A/788/O2'", "atom2_id": "///A/1721/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1722, "atom1_serNum": 16893, "atom2_serNum": 17218, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///A/788/O6", "atom2_id": "///A/803/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1723, "atom1_serNum": 16894, "atom2_serNum": 17216, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///A/788/N1", "atom2_id": "///A/803/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1724, "atom1_serNum": 16896, "atom2_serNum": 17215, "donAcc_type": "standard", "distance": 2.787, "atom1_id": "///A/788/N2", "atom2_id": "///A/803/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1725, "atom1_serNum": 16913, "atom2_serNum": 17198, "donAcc_type": "standard", "distance": 2.746, "atom1_id": "///A/789/O2", "atom2_id": "///A/802/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1726, "atom1_serNum": 16914, "atom2_serNum": 17196, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///A/789/N3", "atom2_id": "///A/802/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1727, "atom1_serNum": 16916, "atom2_serNum": 17195, "donAcc_type": "standard", "distance": 2.959, "atom1_id": "///A/789/N4", "atom2_id": "///A/802/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1728, "atom1_serNum": 16929, "atom2_serNum": 34936, "donAcc_type": "acceptable", "distance": 2.816, "atom1_id": "///A/790/O2'", "atom2_id": "///A/1704/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1729, "atom1_serNum": 16936, "atom2_serNum": 17175, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///A/790/N6", "atom2_id": "///A/801/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1730, "atom1_serNum": 16937, "atom2_serNum": 17173, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///A/790/N1", "atom2_id": "///A/801/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1731, "atom1_serNum": 16955, "atom2_serNum": 17155, "donAcc_type": "standard", "distance": 2.751, "atom1_id": "///A/791/O2", "atom2_id": "///A/800/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1732, "atom1_serNum": 16956, "atom2_serNum": 17153, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///A/791/N3", "atom2_id": "///A/800/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1733, "atom1_serNum": 16958, "atom2_serNum": 17152, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///A/791/N4", "atom2_id": "///A/800/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1734, "atom1_serNum": 16969, "atom2_serNum": 17034, "donAcc_type": "acceptable", "distance": 3.046, "atom1_id": "///A/792/O3'", "atom2_id": "///A/795/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1735, "atom1_serNum": 16971, "atom2_serNum": 17034, "donAcc_type": "acceptable", "distance": 2.434, "atom1_id": "///A/792/O2'", "atom2_id": "///A/795/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1736, "atom1_serNum": 16971, "atom2_serNum": 17086, "donAcc_type": "acceptable", "distance": 3.157, "atom1_id": "///A/792/O2'", "atom2_id": "///A/797/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1737, "atom1_serNum": 16981, "atom2_serNum": 17087, "donAcc_type": "standard", "distance": 2.773, "atom1_id": "///A/792/N2", "atom2_id": "///A/797/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1738, "atom1_serNum": 16982, "atom2_serNum": 17086, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///A/792/N3", "atom2_id": "///A/797/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1739, "atom1_serNum": 16990, "atom2_serNum": 17045, "donAcc_type": "questionable", "distance": 3.289, "atom1_id": "///A/793/O4'", "atom2_id": "///A/795/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1740, "atom1_serNum": 16998, "atom2_serNum": 17044, "donAcc_type": "standard", "distance": 3.981, "atom1_id": "///A/793/O2", "atom2_id": "///A/795/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1741, "atom1_serNum": 17001, "atom2_serNum": 51382, "donAcc_type": "questionable", "distance": 3.340, "atom1_id": "///A/793/O4", "atom2_id": "///A/2640/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1742, "atom1_serNum": 17019, "atom2_serNum": 40184, "donAcc_type": "standard", "distance": 3.202, "atom1_id": "///A/794/N3", "atom2_id": "///A/2043/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1743, "atom1_serNum": 17026, "atom2_serNum": 72188, "donAcc_type": "standard", "distance": 3.379, "atom1_id": "///A/795/OP2", "atom2_id": "///N/89/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1744, "atom1_serNum": 17055, "atom2_serNum": 26515, "donAcc_type": "standard", "distance": 3.283, "atom1_id": "///A/796/O3'", "atom2_id": "///A/1311/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1745, "atom1_serNum": 17057, "atom2_serNum": 34043, "donAcc_type": "acceptable", "distance": 2.836, "atom1_id": "///A/796/O2'", "atom2_id": "///A/1663/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1746, "atom1_serNum": 17064, "atom2_serNum": 17156, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///A/796/N6", "atom2_id": "///A/800/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1747, "atom1_serNum": 17065, "atom2_serNum": 17145, "donAcc_type": "acceptable", "distance": 2.733, "atom1_id": "///A/796/N1", "atom2_id": "///A/800/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1748, "atom1_serNum": 17070, "atom2_serNum": 26515, "donAcc_type": "standard", "distance": 3.207, "atom1_id": "///A/797/OP1", "atom2_id": "///A/1311/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1749, "atom1_serNum": 17070, "atom2_serNum": 33997, "donAcc_type": "standard", "distance": 2.938, "atom1_id": "///A/797/OP1", "atom2_id": "///A/1660/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1750, "atom1_serNum": 17114, "atom2_serNum": 75548, "donAcc_type": "standard", "distance": 3.663, "atom1_id": "///A/799/OP1", "atom2_id": "///U/3/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1751, "atom1_serNum": 17131, "atom2_serNum": 51356, "donAcc_type": "standard", "distance": 3.796, "atom1_id": "///A/799/N1", "atom2_id": "///A/2638/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1752, "atom1_serNum": 17188, "atom2_serNum": 17207, "donAcc_type": "acceptable", "distance": 3.117, "atom1_id": "///A/802/O2'", "atom2_id": "///A/803/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1753, "atom1_serNum": 17264, "atom2_serNum": 39475, "donAcc_type": "questionable", "distance": 2.926, "atom1_id": "///A/805/N2", "atom2_id": "///A/2010/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1754, "atom1_serNum": 17277, "atom2_serNum": 17296, "donAcc_type": "acceptable", "distance": 3.292, "atom1_id": "///A/806/O2'", "atom2_id": "///A/807/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1755, "atom1_serNum": 17350, "atom2_serNum": 30052, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///A/809/N3", "atom2_id": "///A/1477/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1756, "atom1_serNum": 17380, "atom2_serNum": 61477, "donAcc_type": "standard", "distance": 3.973, "atom1_id": "///A/811/OP2", "atom2_id": "///C/213/NE1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1757, "atom1_serNum": 17392, "atom2_serNum": 37104, "donAcc_type": "standard", "distance": 3.210, "atom1_id": "///A/811/N7", "atom2_id": "///A/1804/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1758, "atom1_serNum": 17395, "atom2_serNum": 37106, "donAcc_type": "standard", "distance": 3.019, "atom1_id": "///A/811/N6", "atom2_id": "///A/1804/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1759, "atom1_serNum": 17395, "atom2_serNum": 37407, "donAcc_type": "standard", "distance": 3.714, "atom1_id": "///A/811/N6", "atom2_id": "///A/1818/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1760, "atom1_serNum": 17396, "atom2_serNum": 37397, "donAcc_type": "acceptable", "distance": 3.558, "atom1_id": "///A/811/N1", "atom2_id": "///A/1818/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1761, "atom1_serNum": 17398, "atom2_serNum": 61467, "donAcc_type": "standard", "distance": 3.075, "atom1_id": "///A/811/N3", "atom2_id": "///C/212/NH1", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1762, "atom1_serNum": 17410, "atom2_serNum": 17429, "donAcc_type": "acceptable", "distance": 3.226, "atom1_id": "///A/812/O2'", "atom2_id": "///A/813/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1763, "atom1_serNum": 17456, "atom2_serNum": 17472, "donAcc_type": "acceptable", "distance": 3.212, "atom1_id": "///A/814/O2'", "atom2_id": "///A/815/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1764, "atom1_serNum": 17472, "atom2_serNum": 34140, "donAcc_type": "acceptable", "distance": 3.212, "atom1_id": "///A/815/O4'", "atom2_id": "///A/1667/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1765, "atom1_serNum": 17486, "atom2_serNum": 28808, "donAcc_type": "acceptable", "distance": 3.326, "atom1_id": "///A/815/N2", "atom2_id": "///A/1418/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1766, "atom1_serNum": 17517, "atom2_serNum": 75608, "donAcc_type": "standard", "distance": 3.000, "atom1_id": "///A/817/O3'", "atom2_id": "///U/10/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1767, "atom1_serNum": 17519, "atom2_serNum": 17533, "donAcc_type": "acceptable", "distance": 2.560, "atom1_id": "///A/817/O2'", "atom2_id": "///A/818/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1768, "atom1_serNum": 17519, "atom2_serNum": 28269, "donAcc_type": "acceptable", "distance": 3.878, "atom1_id": "///A/817/O2'", "atom2_id": "///A/1393/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1769, "atom1_serNum": 17529, "atom2_serNum": 28271, "donAcc_type": "standard", "distance": 3.587, "atom1_id": "///A/817/N2", "atom2_id": "///A/1393/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1770, "atom1_serNum": 17542, "atom2_serNum": 28283, "donAcc_type": "acceptable", "distance": 3.318, "atom1_id": "///A/818/O2'", "atom2_id": "///A/1394/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1771, "atom1_serNum": 17565, "atom2_serNum": 17584, "donAcc_type": "acceptable", "distance": 3.141, "atom1_id": "///A/819/O2'", "atom2_id": "///A/820/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1772, "atom1_serNum": 17588, "atom2_serNum": 17697, "donAcc_type": "acceptable", "distance": 3.413, "atom1_id": "///A/820/O2'", "atom2_id": "///A/825/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1773, "atom1_serNum": 17608, "atom2_serNum": 17622, "donAcc_type": "acceptable", "distance": 3.159, "atom1_id": "///A/821/O2'", "atom2_id": "///A/822/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1774, "atom1_serNum": 17616, "atom2_serNum": 17894, "donAcc_type": "acceptable", "distance": 3.359, "atom1_id": "///A/821/N1", "atom2_id": "///A/834/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1775, "atom1_serNum": 17618, "atom2_serNum": 17686, "donAcc_type": "standard", "distance": 3.757, "atom1_id": "///A/821/N3", "atom2_id": "///A/824/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1776, "atom1_serNum": 17621, "atom2_serNum": 17676, "donAcc_type": "acceptable", "distance": 3.192, "atom1_id": "///A/822/OP1", "atom2_id": "///A/824/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1777, "atom1_serNum": 17630, "atom2_serNum": 18047, "donAcc_type": "acceptable", "distance": 3.441, "atom1_id": "///A/822/O2'", "atom2_id": "///A/841/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1778, "atom1_serNum": 17637, "atom2_serNum": 17985, "donAcc_type": "standard", "distance": 2.857, "atom1_id": "///A/822/O6", "atom2_id": "///A/838/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1779, "atom1_serNum": 17638, "atom2_serNum": 17983, "donAcc_type": "standard", "distance": 2.853, "atom1_id": "///A/822/N1", "atom2_id": "///A/838/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1780, "atom1_serNum": 17640, "atom2_serNum": 17982, "donAcc_type": "standard", "distance": 2.762, "atom1_id": "///A/822/N2", "atom2_id": "///A/838/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1781, "atom1_serNum": 17676, "atom2_serNum": 17695, "donAcc_type": "acceptable", "distance": 3.095, "atom1_id": "///A/824/O2'", "atom2_id": "///A/825/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1782, "atom1_serNum": 17683, "atom2_serNum": 17901, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///A/824/O6", "atom2_id": "///A/834/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1783, "atom1_serNum": 17684, "atom2_serNum": 17899, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///A/824/N1", "atom2_id": "///A/834/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1784, "atom1_serNum": 17686, "atom2_serNum": 17898, "donAcc_type": "standard", "distance": 2.789, "atom1_id": "///A/824/N2", "atom2_id": "///A/834/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1785, "atom1_serNum": 17690, "atom2_serNum": 60256, "donAcc_type": "standard", "distance": 2.734, "atom1_id": "///A/825/OP1", "atom2_id": "///C/48/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1786, "atom1_serNum": 17706, "atom2_serNum": 17881, "donAcc_type": "standard", "distance": 3.495, "atom1_id": "///A/825/O6", "atom2_id": "///A/833/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1787, "atom1_serNum": 17707, "atom2_serNum": 17879, "donAcc_type": "standard", "distance": 3.479, "atom1_id": "///A/825/N1", "atom2_id": "///A/833/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1788, "atom1_serNum": 17709, "atom2_serNum": 17878, "donAcc_type": "standard", "distance": 3.339, "atom1_id": "///A/825/N2", "atom2_id": "///A/833/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1789, "atom1_serNum": 17713, "atom2_serNum": 60257, "donAcc_type": "standard", "distance": 3.076, "atom1_id": "///A/826/OP1", "atom2_id": "///C/49/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1790, "atom1_serNum": 17726, "atom2_serNum": 17859, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///A/826/O2", "atom2_id": "///A/832/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1791, "atom1_serNum": 17727, "atom2_serNum": 17858, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///A/826/N3", "atom2_id": "///A/832/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1792, "atom1_serNum": 17733, "atom2_serNum": 61513, "donAcc_type": "standard", "distance": 3.274, "atom1_id": "///A/827/OP1", "atom2_id": "///C/217/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1793, "atom1_serNum": 17742, "atom2_serNum": 17816, "donAcc_type": "acceptable", "distance": 3.311, "atom1_id": "///A/827/O2'", "atom2_id": "///A/830/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1794, "atom1_serNum": 17753, "atom2_serNum": 17816, "donAcc_type": "standard", "distance": 3.162, "atom1_id": "///A/827/N3", "atom2_id": "///A/830/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1795, "atom1_serNum": 17756, "atom2_serNum": 61513, "donAcc_type": "standard", "distance": 3.926, "atom1_id": "///A/828/OP1", "atom2_id": "///C/217/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1796, "atom1_serNum": 17765, "atom2_serNum": 37377, "donAcc_type": "acceptable", "distance": 2.597, "atom1_id": "///A/828/O2'", "atom2_id": "///A/1817/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1797, "atom1_serNum": 17765, "atom2_serNum": 37381, "donAcc_type": "acceptable", "distance": 3.143, "atom1_id": "///A/828/O2'", "atom2_id": "///A/1817/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1798, "atom1_serNum": 17765, "atom2_serNum": 37393, "donAcc_type": "acceptable", "distance": 3.552, "atom1_id": "///A/828/O2'", "atom2_id": "///A/1818/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1799, "atom1_serNum": 17773, "atom2_serNum": 37119, "donAcc_type": "acceptable", "distance": 3.008, "atom1_id": "///A/828/N1", "atom2_id": "///A/1805/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1800, "atom1_serNum": 17775, "atom2_serNum": 37129, "donAcc_type": "standard", "distance": 3.159, "atom1_id": "///A/828/N3", "atom2_id": "///A/1805/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1801, "atom1_serNum": 17779, "atom2_serNum": 37142, "donAcc_type": "acceptable", "distance": 3.219, "atom1_id": "///A/829/OP2", "atom2_id": "///A/1806/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1802, "atom1_serNum": 17779, "atom2_serNum": 37158, "donAcc_type": "questionable", "distance": 3.258, "atom1_id": "///A/829/OP2", "atom2_id": "///A/1807/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1803, "atom1_serNum": 17787, "atom2_serNum": 61560, "donAcc_type": "acceptable", "distance": 3.200, "atom1_id": "///A/829/O2'", "atom2_id": "///C/224/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1804, "atom1_serNum": 17800, "atom2_serNum": 37355, "donAcc_type": "acceptable", "distance": 3.250, "atom1_id": "///A/830/OP1", "atom2_id": "///A/1816/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1805, "atom1_serNum": 17819, "atom2_serNum": 37162, "donAcc_type": "acceptable", "distance": 3.394, "atom1_id": "///A/830/N3", "atom2_id": "///A/1807/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1806, "atom1_serNum": 17822, "atom2_serNum": 50911, "donAcc_type": "questionable", "distance": 3.165, "atom1_id": "///A/831/OP1", "atom2_id": "///A/2618/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1807, "atom1_serNum": 17827, "atom2_serNum": 61576, "donAcc_type": "standard", "distance": 3.000, "atom1_id": "///A/831/O4'", "atom2_id": "///C/226/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1808, "atom1_serNum": 17831, "atom2_serNum": 17843, "donAcc_type": "acceptable", "distance": 2.466, "atom1_id": "///A/831/O2'", "atom2_id": "///A/832/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1809, "atom1_serNum": 17838, "atom2_serNum": 18028, "donAcc_type": "standard", "distance": 3.150, "atom1_id": "///A/831/O4", "atom2_id": "///A/840/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1810, "atom1_serNum": 17885, "atom2_serNum": 37209, "donAcc_type": "standard", "distance": 3.813, "atom1_id": "///A/834/OP1", "atom2_id": "///A/1809/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1811, "atom1_serNum": 17905, "atom2_serNum": 17985, "donAcc_type": "standard", "distance": 2.742, "atom1_id": "///A/835/OP1", "atom2_id": "///A/838/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1812, "atom1_serNum": 17943, "atom2_serNum": 33960, "donAcc_type": "standard", "distance": 3.409, "atom1_id": "///A/836/N6", "atom2_id": "///A/1659/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1813, "atom1_serNum": 17958, "atom2_serNum": 17971, "donAcc_type": "acceptable", "distance": 2.588, "atom1_id": "///A/837/O2'", "atom2_id": "///A/838/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1814, "atom1_serNum": 17998, "atom2_serNum": 48842, "donAcc_type": "acceptable", "distance": 2.491, "atom1_id": "///A/839/O2'", "atom2_id": "///A/2469/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1815, "atom1_serNum": 17998, "atom2_serNum": 48844, "donAcc_type": "acceptable", "distance": 3.331, "atom1_id": "///A/839/O2'", "atom2_id": "///A/2469/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1816, "atom1_serNum": 17998, "atom2_serNum": 48857, "donAcc_type": "acceptable", "distance": 3.034, "atom1_id": "///A/839/O2'", "atom2_id": "///A/2470/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1817, "atom1_serNum": 18076, "atom2_serNum": 63682, "donAcc_type": "standard", "distance": 3.627, "atom1_id": "///A/843/OP1", "atom2_id": "///E/62/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1818, "atom1_serNum": 18096, "atom2_serNum": 63681, "donAcc_type": "standard", "distance": 2.398, "atom1_id": "///A/844/OP1", "atom2_id": "///E/62/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1819, "atom1_serNum": 18140, "atom2_serNum": 18171, "donAcc_type": "acceptable", "distance": 3.241, "atom1_id": "///A/846/OP2", "atom2_id": "///A/847/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1820, "atom1_serNum": 18184, "atom2_serNum": 63632, "donAcc_type": "acceptable", "distance": 2.611, "atom1_id": "///A/848/OP1", "atom2_id": "///E/55/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1821, "atom1_serNum": 18197, "atom2_serNum": 63615, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///A/848/N7", "atom2_id": "///E/53/ND2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 1822, "atom1_serNum": 18200, "atom2_serNum": 63615, "donAcc_type": "standard", "distance": 2.651, "atom1_id": "///A/848/O6", "atom2_id": "///E/53/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1823, "atom1_serNum": 18280, "atom2_serNum": 18294, "donAcc_type": "acceptable", "distance": 2.210, "atom1_id": "///A/852/O2'", "atom2_id": "///A/853/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1824, "atom1_serNum": 18290, "atom2_serNum": 41320, "donAcc_type": "questionable", "distance": 3.097, "atom1_id": "///A/852/N2", "atom2_id": "///A/2096/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1825, "atom1_serNum": 18315, "atom2_serNum": 18815, "donAcc_type": "standard", "distance": 2.210, "atom1_id": "///A/854/OP2", "atom2_id": "///A/877/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1826, "atom1_serNum": 18343, "atom2_serNum": 26139, "donAcc_type": "acceptable", "distance": 2.892, "atom1_id": "///A/855/O2'", "atom2_id": "///A/1294/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1827, "atom1_serNum": 18353, "atom2_serNum": 26149, "donAcc_type": "standard", "distance": 3.638, "atom1_id": "///A/855/N2", "atom2_id": "///A/1294/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1828, "atom1_serNum": 18387, "atom2_serNum": 67357, "donAcc_type": "questionable", "distance": 2.759, "atom1_id": "///A/857/O3'", "atom2_id": "///I/20/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1829, "atom1_serNum": 18401, "atom2_serNum": 67369, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///A/858/OP2", "atom2_id": "///I/22/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1830, "atom1_serNum": 18405, "atom2_serNum": 26068, "donAcc_type": "questionable", "distance": 3.240, "atom1_id": "///A/858/O4'", "atom2_id": "///A/1291/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1831, "atom1_serNum": 18409, "atom2_serNum": 26049, "donAcc_type": "acceptable", "distance": 2.753, "atom1_id": "///A/858/O2'", "atom2_id": "///A/1290/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1832, "atom1_serNum": 18429, "atom2_serNum": 25527, "donAcc_type": "acceptable", "distance": 2.452, "atom1_id": "///A/859/O2'", "atom2_id": "///A/1266/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1833, "atom1_serNum": 18433, "atom2_serNum": 24890, "donAcc_type": "standard", "distance": 2.719, "atom1_id": "///A/859/O2", "atom2_id": "///A/1236/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1834, "atom1_serNum": 18433, "atom2_serNum": 25527, "donAcc_type": "acceptable", "distance": 3.305, "atom1_id": "///A/859/O2", "atom2_id": "///A/1266/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1835, "atom1_serNum": 18434, "atom2_serNum": 24888, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/859/N3", "atom2_id": "///A/1236/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1836, "atom1_serNum": 18436, "atom2_serNum": 24887, "donAcc_type": "standard", "distance": 2.988, "atom1_id": "///A/859/N4", "atom2_id": "///A/1236/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1837, "atom1_serNum": 18441, "atom2_serNum": 67381, "donAcc_type": "standard", "distance": 2.759, "atom1_id": "///A/860/OP2", "atom2_id": "///I/24/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1838, "atom1_serNum": 18449, "atom2_serNum": 18465, "donAcc_type": "acceptable", "distance": 3.265, "atom1_id": "///A/860/O2'", "atom2_id": "///A/861/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1839, "atom1_serNum": 18449, "atom2_serNum": 25505, "donAcc_type": "acceptable", "distance": 2.921, "atom1_id": "///A/860/O2'", "atom2_id": "///A/1265/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1840, "atom1_serNum": 18449, "atom2_serNum": 25537, "donAcc_type": "acceptable", "distance": 3.537, "atom1_id": "///A/860/O2'", "atom2_id": "///A/1266/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1841, "atom1_serNum": 18454, "atom2_serNum": 24866, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///A/860/N3", "atom2_id": "///A/1235/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1842, "atom1_serNum": 18456, "atom2_serNum": 24865, "donAcc_type": "standard", "distance": 2.981, "atom1_id": "///A/860/O4", "atom2_id": "///A/1235/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1843, "atom1_serNum": 18460, "atom2_serNum": 71383, "donAcc_type": "standard", "distance": 3.614, "atom1_id": "///A/861/OP1", "atom2_id": "///M/85/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1844, "atom1_serNum": 18473, "atom2_serNum": 24845, "donAcc_type": "standard", "distance": 2.780, "atom1_id": "///A/861/O2", "atom2_id": "///A/1234/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1845, "atom1_serNum": 18474, "atom2_serNum": 24843, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///A/861/N3", "atom2_id": "///A/1234/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1846, "atom1_serNum": 18476, "atom2_serNum": 24842, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///A/861/N4", "atom2_id": "///A/1234/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1847, "atom1_serNum": 18476, "atom2_serNum": 67384, "donAcc_type": "standard", "distance": 3.204, "atom1_id": "///A/861/N4", "atom2_id": "///I/24/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 1848, "atom1_serNum": 18480, "atom2_serNum": 71382, "donAcc_type": "standard", "distance": 2.541, "atom1_id": "///A/862/OP1", "atom2_id": "///M/84/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 1849, "atom1_serNum": 18494, "atom2_serNum": 24821, "donAcc_type": "standard", "distance": 3.113, "atom1_id": "///A/862/N3", "atom2_id": "///A/1233/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1850, "atom1_serNum": 18496, "atom2_serNum": 24820, "donAcc_type": "standard", "distance": 3.059, "atom1_id": "///A/862/O4", "atom2_id": "///A/1233/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1851, "atom1_serNum": 18500, "atom2_serNum": 24659, "donAcc_type": "acceptable", "distance": 3.606, "atom1_id": "///A/863/OP1", "atom2_id": "///A/1226/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1852, "atom1_serNum": 18513, "atom2_serNum": 24800, "donAcc_type": "standard", "distance": 2.785, "atom1_id": "///A/863/O2", "atom2_id": "///A/1232/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1853, "atom1_serNum": 18514, "atom2_serNum": 24798, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///A/863/N3", "atom2_id": "///A/1232/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1854, "atom1_serNum": 18516, "atom2_serNum": 24797, "donAcc_type": "standard", "distance": 2.979, "atom1_id": "///A/863/N4", "atom2_id": "///A/1232/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1855, "atom1_serNum": 18529, "atom2_serNum": 18990, "donAcc_type": "acceptable", "distance": 3.097, "atom1_id": "///A/864/O2'", "atom2_id": "///A/886/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1856, "atom1_serNum": 18533, "atom2_serNum": 24777, "donAcc_type": "standard", "distance": 3.441, "atom1_id": "///A/864/O2", "atom2_id": "///A/1231/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1857, "atom1_serNum": 18536, "atom2_serNum": 24774, "donAcc_type": "standard", "distance": 3.774, "atom1_id": "///A/864/N4", "atom2_id": "///A/1231/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1858, "atom1_serNum": 18536, "atom2_serNum": 24797, "donAcc_type": "standard", "distance": 2.808, "atom1_id": "///A/864/N4", "atom2_id": "///A/1232/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1859, "atom1_serNum": 18541, "atom2_serNum": 24709, "donAcc_type": "questionable", "distance": 3.055, "atom1_id": "///A/865/OP2", "atom2_id": "///A/1228/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1860, "atom1_serNum": 18549, "atom2_serNum": 18568, "donAcc_type": "acceptable", "distance": 3.297, "atom1_id": "///A/865/O2'", "atom2_id": "///A/866/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1861, "atom1_serNum": 18549, "atom2_serNum": 18979, "donAcc_type": "acceptable", "distance": 3.258, "atom1_id": "///A/865/O2'", "atom2_id": "///A/885/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1862, "atom1_serNum": 18557, "atom2_serNum": 24717, "donAcc_type": "standard", "distance": 2.374, "atom1_id": "///A/865/N1", "atom2_id": "///A/1229/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1863, "atom1_serNum": 18559, "atom2_serNum": 24749, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///A/865/N2", "atom2_id": "///A/1230/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1864, "atom1_serNum": 18560, "atom2_serNum": 24752, "donAcc_type": "standard", "distance": 3.113, "atom1_id": "///A/865/N3", "atom2_id": "///A/1230/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1865, "atom1_serNum": 18564, "atom2_serNum": 24712, "donAcc_type": "standard", "distance": 2.459, "atom1_id": "///A/866/OP2", "atom2_id": "///A/1228/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1866, "atom1_serNum": 18572, "atom2_serNum": 18959, "donAcc_type": "acceptable", "distance": 3.476, "atom1_id": "///A/866/O2'", "atom2_id": "///A/884/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1867, "atom1_serNum": 18576, "atom2_serNum": 24730, "donAcc_type": "standard", "distance": 3.269, "atom1_id": "///A/866/N7", "atom2_id": "///A/1229/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1868, "atom1_serNum": 18586, "atom2_serNum": 21383, "donAcc_type": "standard", "distance": 3.356, "atom1_id": "///A/867/OP2", "atom2_id": "///A/1019/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1869, "atom1_serNum": 18590, "atom2_serNum": 20720, "donAcc_type": "standard", "distance": 3.941, "atom1_id": "///A/867/O4'", "atom2_id": "///A/988/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1870, "atom1_serNum": 18594, "atom2_serNum": 18946, "donAcc_type": "acceptable", "distance": 3.474, "atom1_id": "///A/867/O2'", "atom2_id": "///A/883/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1871, "atom1_serNum": 18594, "atom2_serNum": 20733, "donAcc_type": "acceptable", "distance": 2.890, "atom1_id": "///A/867/O2'", "atom2_id": "///A/989/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1872, "atom1_serNum": 18598, "atom2_serNum": 21383, "donAcc_type": "standard", "distance": 3.489, "atom1_id": "///A/867/N7", "atom2_id": "///A/1019/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1873, "atom1_serNum": 18604, "atom2_serNum": 20733, "donAcc_type": "acceptable", "distance": 2.556, "atom1_id": "///A/867/N3", "atom2_id": "///A/989/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1874, "atom1_serNum": 18614, "atom2_serNum": 20787, "donAcc_type": "questionable", "distance": 2.711, "atom1_id": "///A/868/O3'", "atom2_id": "///A/992/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1875, "atom1_serNum": 18616, "atom2_serNum": 20787, "donAcc_type": "acceptable", "distance": 2.938, "atom1_id": "///A/868/O2'", "atom2_id": "///A/992/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1876, "atom1_serNum": 18620, "atom2_serNum": 21363, "donAcc_type": "standard", "distance": 3.351, "atom1_id": "///A/868/N7", "atom2_id": "///A/1018/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1877, "atom1_serNum": 18623, "atom2_serNum": 21353, "donAcc_type": "acceptable", "distance": 3.101, "atom1_id": "///A/868/N6", "atom2_id": "///A/1018/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1878, "atom1_serNum": 18623, "atom2_serNum": 21364, "donAcc_type": "standard", "distance": 3.256, "atom1_id": "///A/868/N6", "atom2_id": "///A/1018/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1879, "atom1_serNum": 18630, "atom2_serNum": 20787, "donAcc_type": "questionable", "distance": 3.051, "atom1_id": "///A/869/OP2", "atom2_id": "///A/992/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1880, "atom1_serNum": 18638, "atom2_serNum": 18650, "donAcc_type": "acceptable", "distance": 2.660, "atom1_id": "///A/869/O2'", "atom2_id": "///A/870/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1881, "atom1_serNum": 18643, "atom2_serNum": 18922, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///A/869/N3", "atom2_id": "///A/882/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1882, "atom1_serNum": 18645, "atom2_serNum": 18921, "donAcc_type": "standard", "distance": 3.011, "atom1_id": "///A/869/O4", "atom2_id": "///A/882/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1883, "atom1_serNum": 18665, "atom2_serNum": 18901, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///A/870/N6", "atom2_id": "///A/881/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1884, "atom1_serNum": 18666, "atom2_serNum": 18899, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///A/870/N1", "atom2_id": "///A/881/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1885, "atom1_serNum": 18680, "atom2_serNum": 18696, "donAcc_type": "acceptable", "distance": 2.206, "atom1_id": "///A/871/O2'", "atom2_id": "///A/872/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1886, "atom1_serNum": 18680, "atom2_serNum": 18699, "donAcc_type": "acceptable", "distance": 2.945, "atom1_id": "///A/871/O2'", "atom2_id": "///A/872/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1887, "atom1_serNum": 18687, "atom2_serNum": 18881, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///A/871/O6", "atom2_id": "///A/880/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1888, "atom1_serNum": 18688, "atom2_serNum": 18879, "donAcc_type": "standard", "distance": 2.842, "atom1_id": "///A/871/N1", "atom2_id": "///A/880/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1889, "atom1_serNum": 18690, "atom2_serNum": 18878, "donAcc_type": "standard", "distance": 2.702, "atom1_id": "///A/871/N2", "atom2_id": "///A/880/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1890, "atom1_serNum": 18690, "atom2_serNum": 47078, "donAcc_type": "standard", "distance": 2.548, "atom1_id": "///A/871/N2", "atom2_id": "///A/2387/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1891, "atom1_serNum": 18691, "atom2_serNum": 47077, "donAcc_type": "standard", "distance": 2.721, "atom1_id": "///A/871/N3", "atom2_id": "///A/2387/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1892, "atom1_serNum": 18699, "atom2_serNum": 47077, "donAcc_type": "standard", "distance": 3.221, "atom1_id": "///A/872/O4'", "atom2_id": "///A/2387/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1893, "atom1_serNum": 18707, "atom2_serNum": 18861, "donAcc_type": "standard", "distance": 2.664, "atom1_id": "///A/872/O2", "atom2_id": "///A/879/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1894, "atom1_serNum": 18708, "atom2_serNum": 18859, "donAcc_type": "standard", "distance": 2.825, "atom1_id": "///A/872/N3", "atom2_id": "///A/879/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1895, "atom1_serNum": 18710, "atom2_serNum": 18858, "donAcc_type": "standard", "distance": 2.974, "atom1_id": "///A/872/N4", "atom2_id": "///A/879/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1896, "atom1_serNum": 18710, "atom2_serNum": 18881, "donAcc_type": "questionable", "distance": 3.133, "atom1_id": "///A/872/N4", "atom2_id": "///A/880/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1897, "atom1_serNum": 18721, "atom2_serNum": 18767, "donAcc_type": "questionable", "distance": 2.845, "atom1_id": "///A/873/O3'", "atom2_id": "///A/875/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1898, "atom1_serNum": 18723, "atom2_serNum": 18836, "donAcc_type": "acceptable", "distance": 3.203, "atom1_id": "///A/873/O2'", "atom2_id": "///A/878/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1899, "atom1_serNum": 18723, "atom2_serNum": 18838, "donAcc_type": "acceptable", "distance": 2.984, "atom1_id": "///A/873/O2'", "atom2_id": "///A/878/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1900, "atom1_serNum": 18727, "atom2_serNum": 18859, "donAcc_type": "standard", "distance": 2.317, "atom1_id": "///A/873/O2", "atom2_id": "///A/879/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1901, "atom1_serNum": 18727, "atom2_serNum": 18861, "donAcc_type": "standard", "distance": 3.255, "atom1_id": "///A/873/O2", "atom2_id": "///A/879/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1902, "atom1_serNum": 18728, "atom2_serNum": 18858, "donAcc_type": "standard", "distance": 3.346, "atom1_id": "///A/873/N3", "atom2_id": "///A/879/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1903, "atom1_serNum": 18734, "atom2_serNum": 48591, "donAcc_type": "questionable", "distance": 2.745, "atom1_id": "///A/874/OP1", "atom2_id": "///A/2458/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1904, "atom1_serNum": 18736, "atom2_serNum": 18767, "donAcc_type": "questionable", "distance": 2.796, "atom1_id": "///A/874/O5'", "atom2_id": "///A/875/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1905, "atom1_serNum": 18743, "atom2_serNum": 18747, "donAcc_type": "acceptable", "distance": 3.158, "atom1_id": "///A/874/O2'", "atom2_id": "///A/874/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1906, "atom1_serNum": 18743, "atom2_serNum": 41338, "donAcc_type": "acceptable", "distance": 2.777, "atom1_id": "///A/874/O2'", "atom2_id": "///A/2097/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1907, "atom1_serNum": 18743, "atom2_serNum": 41340, "donAcc_type": "acceptable", "distance": 2.966, "atom1_id": "///A/874/O2'", "atom2_id": "///A/2097/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1908, "atom1_serNum": 18747, "atom2_serNum": 41337, "donAcc_type": "questionable", "distance": 3.067, "atom1_id": "///A/874/O2", "atom2_id": "///A/2097/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1909, "atom1_serNum": 18748, "atom2_serNum": 45098, "donAcc_type": "standard", "distance": 2.745, "atom1_id": "///A/874/N3", "atom2_id": "///A/2273/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1910, "atom1_serNum": 18763, "atom2_serNum": 18832, "donAcc_type": "acceptable", "distance": 2.568, "atom1_id": "///A/875/O2'", "atom2_id": "///A/878/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1911, "atom1_serNum": 18774, "atom2_serNum": 18805, "donAcc_type": "acceptable", "distance": 3.054, "atom1_id": "///A/876/OP1", "atom2_id": "///A/877/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1912, "atom1_serNum": 18774, "atom2_serNum": 18824, "donAcc_type": "questionable", "distance": 2.705, "atom1_id": "///A/876/OP1", "atom2_id": "///A/878/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1913, "atom1_serNum": 18894, "atom2_serNum": 47080, "donAcc_type": "acceptable", "distance": 2.925, "atom1_id": "///A/881/O2'", "atom2_id": "///A/2387/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1914, "atom1_serNum": 18943, "atom2_serNum": 20738, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///A/883/O6", "atom2_id": "///A/989/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1915, "atom1_serNum": 18944, "atom2_serNum": 20737, "donAcc_type": "standard", "distance": 3.283, "atom1_id": "///A/883/N1", "atom2_id": "///A/989/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1916, "atom1_serNum": 18963, "atom2_serNum": 20720, "donAcc_type": "standard", "distance": 2.802, "atom1_id": "///A/884/O2", "atom2_id": "///A/988/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1917, "atom1_serNum": 18964, "atom2_serNum": 20695, "donAcc_type": "standard", "distance": 3.166, "atom1_id": "///A/884/N3", "atom2_id": "///A/987/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1918, "atom1_serNum": 18964, "atom2_serNum": 20718, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///A/884/N3", "atom2_id": "///A/988/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1919, "atom1_serNum": 18966, "atom2_serNum": 20717, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///A/884/N4", "atom2_id": "///A/988/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1920, "atom1_serNum": 18983, "atom2_serNum": 20675, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///A/885/O2", "atom2_id": "///A/986/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1921, "atom1_serNum": 18984, "atom2_serNum": 20673, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///A/885/N3", "atom2_id": "///A/986/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1922, "atom1_serNum": 18986, "atom2_serNum": 20672, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///A/885/N4", "atom2_id": "///A/986/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1923, "atom1_serNum": 18999, "atom2_serNum": 24790, "donAcc_type": "acceptable", "distance": 2.892, "atom1_id": "///A/886/O2'", "atom2_id": "///A/1232/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1924, "atom1_serNum": 19003, "atom2_serNum": 20650, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///A/886/O2", "atom2_id": "///A/985/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1925, "atom1_serNum": 19004, "atom2_serNum": 20649, "donAcc_type": "standard", "distance": 3.004, "atom1_id": "///A/886/N3", "atom2_id": "///A/985/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1926, "atom1_serNum": 19019, "atom2_serNum": 19035, "donAcc_type": "acceptable", "distance": 3.089, "atom1_id": "///A/887/O2'", "atom2_id": "///A/888/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1927, "atom1_serNum": 19023, "atom2_serNum": 20629, "donAcc_type": "standard", "distance": 2.750, "atom1_id": "///A/887/O2", "atom2_id": "///A/984/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1928, "atom1_serNum": 19024, "atom2_serNum": 20627, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///A/887/N3", "atom2_id": "///A/984/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1929, "atom1_serNum": 19026, "atom2_serNum": 20626, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/887/N4", "atom2_id": "///A/984/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1930, "atom1_serNum": 19046, "atom2_serNum": 20606, "donAcc_type": "standard", "distance": 2.972, "atom1_id": "///A/888/N6", "atom2_id": "///A/983/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1931, "atom1_serNum": 19047, "atom2_serNum": 20604, "donAcc_type": "standard", "distance": 2.826, "atom1_id": "///A/888/N1", "atom2_id": "///A/983/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1932, "atom1_serNum": 19068, "atom2_serNum": 20586, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///A/889/N6", "atom2_id": "///A/982/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1933, "atom1_serNum": 19069, "atom2_serNum": 20584, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///A/889/N1", "atom2_id": "///A/982/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1934, "atom1_serNum": 19090, "atom2_serNum": 20566, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///A/890/O6", "atom2_id": "///A/981/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1935, "atom1_serNum": 19091, "atom2_serNum": 20564, "donAcc_type": "standard", "distance": 2.848, "atom1_id": "///A/890/N1", "atom2_id": "///A/981/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1936, "atom1_serNum": 19093, "atom2_serNum": 20563, "donAcc_type": "standard", "distance": 2.724, "atom1_id": "///A/890/N2", "atom2_id": "///A/981/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1937, "atom1_serNum": 19113, "atom2_serNum": 20546, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///A/891/O6", "atom2_id": "///A/980/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1938, "atom1_serNum": 19114, "atom2_serNum": 20544, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///A/891/N1", "atom2_id": "///A/980/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1939, "atom1_serNum": 19116, "atom2_serNum": 20543, "donAcc_type": "standard", "distance": 2.777, "atom1_id": "///A/891/N2", "atom2_id": "///A/980/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1940, "atom1_serNum": 19133, "atom2_serNum": 19178, "donAcc_type": "standard", "distance": 3.369, "atom1_id": "///A/892/O2", "atom2_id": "///A/894/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1941, "atom1_serNum": 19133, "atom2_serNum": 19179, "donAcc_type": "questionable", "distance": 3.121, "atom1_id": "///A/892/O2", "atom2_id": "///A/894/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1942, "atom1_serNum": 19175, "atom2_serNum": 20524, "donAcc_type": "standard", "distance": 3.581, "atom1_id": "///A/894/N7", "atom2_id": "///A/979/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1943, "atom1_serNum": 19178, "atom2_serNum": 20526, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///A/894/N6", "atom2_id": "///A/979/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1944, "atom1_serNum": 19178, "atom2_serNum": 20544, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///A/894/N6", "atom2_id": "///A/980/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1945, "atom1_serNum": 19200, "atom2_serNum": 20482, "donAcc_type": "standard", "distance": 2.754, "atom1_id": "///A/895/O6", "atom2_id": "///A/977/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1946, "atom1_serNum": 19201, "atom2_serNum": 20481, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///A/895/N1", "atom2_id": "///A/977/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1947, "atom1_serNum": 19223, "atom2_serNum": 20464, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///A/896/N6", "atom2_id": "///A/976/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1948, "atom1_serNum": 19224, "atom2_serNum": 20462, "donAcc_type": "standard", "distance": 2.963, "atom1_id": "///A/896/N1", "atom2_id": "///A/976/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1949, "atom1_serNum": 19245, "atom2_serNum": 20444, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///A/897/O6", "atom2_id": "///A/975/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1950, "atom1_serNum": 19246, "atom2_serNum": 20442, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///A/897/N1", "atom2_id": "///A/975/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1951, "atom1_serNum": 19248, "atom2_serNum": 20441, "donAcc_type": "standard", "distance": 2.715, "atom1_id": "///A/897/N2", "atom2_id": "///A/975/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1952, "atom1_serNum": 19261, "atom2_serNum": 74985, "donAcc_type": "acceptable", "distance": 2.904, "atom1_id": "///A/898/O2'", "atom2_id": "///S/42/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 1953, "atom1_serNum": 19266, "atom2_serNum": 20423, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/898/N3", "atom2_id": "///A/974/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1954, "atom1_serNum": 19268, "atom2_serNum": 20422, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///A/898/O4", "atom2_id": "///A/974/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1955, "atom1_serNum": 19285, "atom2_serNum": 20402, "donAcc_type": "standard", "distance": 2.501, "atom1_id": "///A/899/O2", "atom2_id": "///A/973/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1956, "atom1_serNum": 19286, "atom2_serNum": 20400, "donAcc_type": "standard", "distance": 2.820, "atom1_id": "///A/899/N3", "atom2_id": "///A/973/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1957, "atom1_serNum": 19288, "atom2_serNum": 19308, "donAcc_type": "standard", "distance": 2.718, "atom1_id": "///A/899/N4", "atom2_id": "///A/900/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1958, "atom1_serNum": 19288, "atom2_serNum": 20399, "donAcc_type": "standard", "distance": 3.006, "atom1_id": "///A/899/N4", "atom2_id": "///A/973/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1959, "atom1_serNum": 19308, "atom2_serNum": 20400, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///A/900/O4", "atom2_id": "///A/973/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1960, "atom1_serNum": 19328, "atom2_serNum": 20357, "donAcc_type": "standard", "distance": 2.542, "atom1_id": "///A/901/O4", "atom2_id": "///A/971/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1961, "atom1_serNum": 19348, "atom2_serNum": 20315, "donAcc_type": "standard", "distance": 2.675, "atom1_id": "///A/902/O6", "atom2_id": "///A/969/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1962, "atom1_serNum": 19364, "atom2_serNum": 19379, "donAcc_type": "acceptable", "distance": 2.509, "atom1_id": "///A/903/O2'", "atom2_id": "///A/904/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1963, "atom1_serNum": 19364, "atom2_serNum": 19380, "donAcc_type": "acceptable", "distance": 2.782, "atom1_id": "///A/903/O2'", "atom2_id": "///A/904/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1964, "atom1_serNum": 19371, "atom2_serNum": 20295, "donAcc_type": "standard", "distance": 2.649, "atom1_id": "///A/903/O6", "atom2_id": "///A/968/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1965, "atom1_serNum": 19394, "atom2_serNum": 20272, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///A/904/N6", "atom2_id": "///A/967/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1966, "atom1_serNum": 19394, "atom2_serNum": 20293, "donAcc_type": "standard", "distance": 3.981, "atom1_id": "///A/904/N6", "atom2_id": "///A/968/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1967, "atom1_serNum": 19395, "atom2_serNum": 20273, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///A/904/N1", "atom2_id": "///A/967/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1968, "atom1_serNum": 19395, "atom2_serNum": 20292, "donAcc_type": "questionable", "distance": 3.121, "atom1_id": "///A/904/N1", "atom2_id": "///A/968/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1969, "atom1_serNum": 19405, "atom2_serNum": 45284, "donAcc_type": "acceptable", "distance": 3.145, "atom1_id": "///A/905/O4'", "atom2_id": "///A/2297/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1970, "atom1_serNum": 19409, "atom2_serNum": 19428, "donAcc_type": "acceptable", "distance": 2.869, "atom1_id": "///A/905/O2'", "atom2_id": "///A/906/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1971, "atom1_serNum": 19417, "atom2_serNum": 20252, "donAcc_type": "standard", "distance": 3.529, "atom1_id": "///A/905/N1", "atom2_id": "///A/966/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1972, "atom1_serNum": 19419, "atom2_serNum": 45288, "donAcc_type": "standard", "distance": 2.759, "atom1_id": "///A/905/N2", "atom2_id": "///A/2297/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1973, "atom1_serNum": 19432, "atom2_serNum": 19447, "donAcc_type": "acceptable", "distance": 3.046, "atom1_id": "///A/906/O2'", "atom2_id": "///A/907/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1974, "atom1_serNum": 19432, "atom2_serNum": 20185, "donAcc_type": "acceptable", "distance": 2.311, "atom1_id": "///A/906/O2'", "atom2_id": "///A/963/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1975, "atom1_serNum": 19432, "atom2_serNum": 20186, "donAcc_type": "acceptable", "distance": 2.997, "atom1_id": "///A/906/O2'", "atom2_id": "///A/963/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1976, "atom1_serNum": 19442, "atom2_serNum": 20193, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///A/906/N2", "atom2_id": "///A/964/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1977, "atom1_serNum": 19455, "atom2_serNum": 19479, "donAcc_type": "acceptable", "distance": 2.637, "atom1_id": "///A/907/O2'", "atom2_id": "///A/908/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1978, "atom1_serNum": 19455, "atom2_serNum": 20188, "donAcc_type": "acceptable", "distance": 2.646, "atom1_id": "///A/907/O2'", "atom2_id": "///A/963/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1979, "atom1_serNum": 19459, "atom2_serNum": 20205, "donAcc_type": "questionable", "distance": 2.439, "atom1_id": "///A/907/O2", "atom2_id": "///A/964/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1980, "atom1_serNum": 19459, "atom2_serNum": 20208, "donAcc_type": "standard", "distance": 2.865, "atom1_id": "///A/907/O2", "atom2_id": "///A/964/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1981, "atom1_serNum": 19459, "atom2_serNum": 45291, "donAcc_type": "standard", "distance": 3.100, "atom1_id": "///A/907/O2", "atom2_id": "///A/2297/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1982, "atom1_serNum": 19460, "atom2_serNum": 20205, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///A/907/N3", "atom2_id": "///A/964/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1983, "atom1_serNum": 19462, "atom2_serNum": 20193, "donAcc_type": "questionable", "distance": 3.169, "atom1_id": "///A/907/O4", "atom2_id": "///A/964/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1984, "atom1_serNum": 19475, "atom2_serNum": 59108, "donAcc_type": "acceptable", "distance": 3.194, "atom1_id": "///A/908/O2'", "atom2_id": "///B/77/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1985, "atom1_serNum": 19479, "atom2_serNum": 20188, "donAcc_type": "standard", "distance": 2.989, "atom1_id": "///A/908/N7", "atom2_id": "///A/963/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1986, "atom1_serNum": 19482, "atom2_serNum": 20178, "donAcc_type": "acceptable", "distance": 3.083, "atom1_id": "///A/908/N6", "atom2_id": "///A/963/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1987, "atom1_serNum": 19482, "atom2_serNum": 20189, "donAcc_type": "standard", "distance": 3.064, "atom1_id": "///A/908/N6", "atom2_id": "///A/963/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1988, "atom1_serNum": 19485, "atom2_serNum": 59110, "donAcc_type": "acceptable", "distance": 2.857, "atom1_id": "///A/908/N3", "atom2_id": "///B/77/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1989, "atom1_serNum": 19495, "atom2_serNum": 59088, "donAcc_type": "acceptable", "distance": 3.331, "atom1_id": "///A/909/O3'", "atom2_id": "///B/76/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1990, "atom1_serNum": 19497, "atom2_serNum": 59098, "donAcc_type": "acceptable", "distance": 3.300, "atom1_id": "///A/909/O2'", "atom2_id": "///B/76/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1991, "atom1_serNum": 19504, "atom2_serNum": 20165, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///A/909/O6", "atom2_id": "///A/962/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 1992, "atom1_serNum": 19505, "atom2_serNum": 20163, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///A/909/N1", "atom2_id": "///A/962/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1993, "atom1_serNum": 19507, "atom2_serNum": 20162, "donAcc_type": "standard", "distance": 2.829, "atom1_id": "///A/909/N2", "atom2_id": "///A/962/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1994, "atom1_serNum": 19507, "atom2_serNum": 59532, "donAcc_type": "standard", "distance": 3.720, "atom1_id": "///A/909/N2", "atom2_id": "///B/98/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1995, "atom1_serNum": 19520, "atom2_serNum": 59536, "donAcc_type": "acceptable", "distance": 3.148, "atom1_id": "///A/910/O2'", "atom2_id": "///B/98/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1996, "atom1_serNum": 19527, "atom2_serNum": 20125, "donAcc_type": "standard", "distance": 3.667, "atom1_id": "///A/910/N6", "atom2_id": "///A/960/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 1997, "atom1_serNum": 19528, "atom2_serNum": 20145, "donAcc_type": "standard", "distance": 3.697, "atom1_id": "///A/910/N1", "atom2_id": "///A/961/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 1998, "atom1_serNum": 19542, "atom2_serNum": 19557, "donAcc_type": "acceptable", "distance": 2.645, "atom1_id": "///A/911/O2'", "atom2_id": "///A/912/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 1999, "atom1_serNum": 19549, "atom2_serNum": 20105, "donAcc_type": "standard", "distance": 2.850, "atom1_id": "///A/911/O6", "atom2_id": "///A/959/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2000, "atom1_serNum": 19549, "atom2_serNum": 20123, "donAcc_type": "standard", "distance": 3.478, "atom1_id": "///A/911/O6", "atom2_id": "///A/960/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2001, "atom1_serNum": 19550, "atom2_serNum": 20103, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///A/911/N1", "atom2_id": "///A/959/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2002, "atom1_serNum": 19550, "atom2_serNum": 20122, "donAcc_type": "standard", "distance": 3.166, "atom1_id": "///A/911/N1", "atom2_id": "///A/960/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2003, "atom1_serNum": 19552, "atom2_serNum": 19593, "donAcc_type": "standard", "distance": 2.539, "atom1_id": "///A/911/N2", "atom2_id": "///A/913/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2004, "atom1_serNum": 19552, "atom2_serNum": 20102, "donAcc_type": "standard", "distance": 2.827, "atom1_id": "///A/911/N2", "atom2_id": "///A/959/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2005, "atom1_serNum": 19569, "atom2_serNum": 19614, "donAcc_type": "standard", "distance": 2.586, "atom1_id": "///A/912/O2", "atom2_id": "///A/914/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2006, "atom1_serNum": 19569, "atom2_serNum": 19634, "donAcc_type": "questionable", "distance": 2.820, "atom1_id": "///A/912/O2", "atom2_id": "///A/915/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2007, "atom1_serNum": 19570, "atom2_serNum": 20039, "donAcc_type": "standard", "distance": 2.805, "atom1_id": "///A/912/N3", "atom2_id": "///A/956/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2008, "atom1_serNum": 19572, "atom2_serNum": 20036, "donAcc_type": "standard", "distance": 3.298, "atom1_id": "///A/912/N4", "atom2_id": "///A/956/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2009, "atom1_serNum": 19572, "atom2_serNum": 20103, "donAcc_type": "standard", "distance": 3.206, "atom1_id": "///A/912/N4", "atom2_id": "///A/959/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2010, "atom1_serNum": 19585, "atom2_serNum": 19603, "donAcc_type": "acceptable", "distance": 3.356, "atom1_id": "///A/913/O2'", "atom2_id": "///A/914/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2011, "atom1_serNum": 19593, "atom2_serNum": 20122, "donAcc_type": "questionable", "distance": 2.960, "atom1_id": "///A/913/N1", "atom2_id": "///A/960/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2012, "atom1_serNum": 19611, "atom2_serNum": 20098, "donAcc_type": "acceptable", "distance": 2.446, "atom1_id": "///A/914/O2", "atom2_id": "///A/959/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2013, "atom1_serNum": 19612, "atom2_serNum": 20098, "donAcc_type": "acceptable", "distance": 2.772, "atom1_id": "///A/914/N3", "atom2_id": "///A/959/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2014, "atom1_serNum": 19614, "atom2_serNum": 20102, "donAcc_type": "standard", "distance": 2.266, "atom1_id": "///A/914/N4", "atom2_id": "///A/959/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2015, "atom1_serNum": 19632, "atom2_serNum": 20040, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///A/915/N3", "atom2_id": "///A/956/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2016, "atom1_serNum": 19634, "atom2_serNum": 20039, "donAcc_type": "standard", "distance": 3.003, "atom1_id": "///A/915/O4", "atom2_id": "///A/956/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2017, "atom1_serNum": 19654, "atom2_serNum": 20019, "donAcc_type": "standard", "distance": 2.842, "atom1_id": "///A/916/O6", "atom2_id": "///A/955/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2018, "atom1_serNum": 19655, "atom2_serNum": 20017, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///A/916/N1", "atom2_id": "///A/955/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2019, "atom1_serNum": 19657, "atom2_serNum": 20016, "donAcc_type": "standard", "distance": 2.857, "atom1_id": "///A/916/N2", "atom2_id": "///A/955/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2020, "atom1_serNum": 19677, "atom2_serNum": 19999, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///A/917/N6", "atom2_id": "///A/954/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2021, "atom1_serNum": 19678, "atom2_serNum": 19979, "donAcc_type": "standard", "distance": 3.007, "atom1_id": "///A/917/N1", "atom2_id": "///A/953/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2022, "atom1_serNum": 19678, "atom2_serNum": 19997, "donAcc_type": "standard", "distance": 2.793, "atom1_id": "///A/917/N1", "atom2_id": "///A/954/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2023, "atom1_serNum": 19692, "atom2_serNum": 19703, "donAcc_type": "acceptable", "distance": 2.611, "atom1_id": "///A/918/O2'", "atom2_id": "///A/919/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2024, "atom1_serNum": 19696, "atom2_serNum": 19979, "donAcc_type": "standard", "distance": 2.100, "atom1_id": "///A/918/O2", "atom2_id": "///A/953/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2025, "atom1_serNum": 19699, "atom2_serNum": 19954, "donAcc_type": "standard", "distance": 2.314, "atom1_id": "///A/918/O4", "atom2_id": "///A/952/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2026, "atom1_serNum": 19717, "atom2_serNum": 19955, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///A/919/N3", "atom2_id": "///A/952/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2027, "atom1_serNum": 19719, "atom2_serNum": 19954, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///A/919/O4", "atom2_id": "///A/952/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2028, "atom1_serNum": 19739, "atom2_serNum": 19934, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/920/O6", "atom2_id": "///A/951/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2029, "atom1_serNum": 19740, "atom2_serNum": 19932, "donAcc_type": "standard", "distance": 2.820, "atom1_id": "///A/920/N1", "atom2_id": "///A/951/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2030, "atom1_serNum": 19742, "atom2_serNum": 19931, "donAcc_type": "standard", "distance": 2.619, "atom1_id": "///A/920/N2", "atom2_id": "///A/951/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2031, "atom1_serNum": 19765, "atom2_serNum": 19907, "donAcc_type": "acceptable", "distance": 3.057, "atom1_id": "///A/921/N2", "atom2_id": "///A/950/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2032, "atom1_serNum": 19778, "atom2_serNum": 19891, "donAcc_type": "acceptable", "distance": 2.795, "atom1_id": "///A/922/O2'", "atom2_id": "///A/949/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2033, "atom1_serNum": 19778, "atom2_serNum": 19911, "donAcc_type": "acceptable", "distance": 2.414, "atom1_id": "///A/922/O2'", "atom2_id": "///A/950/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2034, "atom1_serNum": 19788, "atom2_serNum": 19912, "donAcc_type": "standard", "distance": 2.767, "atom1_id": "///A/922/N3", "atom2_id": "///A/950/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2035, "atom1_serNum": 20024, "atom2_serNum": 20105, "donAcc_type": "standard", "distance": 3.216, "atom1_id": "///A/956/OP2", "atom2_id": "///A/959/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2036, "atom1_serNum": 20032, "atom2_serNum": 20089, "donAcc_type": "acceptable", "distance": 3.000, "atom1_id": "///A/956/O2'", "atom2_id": "///A/959/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2037, "atom1_serNum": 20032, "atom2_serNum": 20090, "donAcc_type": "acceptable", "distance": 2.383, "atom1_id": "///A/956/O2'", "atom2_id": "///A/959/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2038, "atom1_serNum": 20045, "atom2_serNum": 20080, "donAcc_type": "questionable", "distance": 2.788, "atom1_id": "///A/957/OP1", "atom2_id": "///A/958/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2039, "atom1_serNum": 20045, "atom2_serNum": 20083, "donAcc_type": "standard", "distance": 3.225, "atom1_id": "///A/957/OP1", "atom2_id": "///A/958/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2040, "atom1_serNum": 20050, "atom2_serNum": 45211, "donAcc_type": "questionable", "distance": 3.100, "atom1_id": "///A/957/O4'", "atom2_id": "///A/2294/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2041, "atom1_serNum": 20052, "atom2_serNum": 45198, "donAcc_type": "questionable", "distance": 2.846, "atom1_id": "///A/957/O3'", "atom2_id": "///A/2293/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2042, "atom1_serNum": 20054, "atom2_serNum": 45204, "donAcc_type": "acceptable", "distance": 2.868, "atom1_id": "///A/957/O2'", "atom2_id": "///A/2293/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2043, "atom1_serNum": 20054, "atom2_serNum": 45468, "donAcc_type": "acceptable", "distance": 2.712, "atom1_id": "///A/957/O2'", "atom2_id": "///A/2305/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2044, "atom1_serNum": 20061, "atom2_serNum": 45374, "donAcc_type": "acceptable", "distance": 3.976, "atom1_id": "///A/957/N6", "atom2_id": "///A/2301/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2045, "atom1_serNum": 20064, "atom2_serNum": 45200, "donAcc_type": "acceptable", "distance": 2.341, "atom1_id": "///A/957/N3", "atom2_id": "///A/2293/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2046, "atom1_serNum": 20067, "atom2_serNum": 45211, "donAcc_type": "questionable", "distance": 2.604, "atom1_id": "///A/958/OP1", "atom2_id": "///A/2294/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2047, "atom1_serNum": 20122, "atom2_serNum": 20145, "donAcc_type": "standard", "distance": 2.408, "atom1_id": "///A/960/O2", "atom2_id": "///A/961/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2048, "atom1_serNum": 20211, "atom2_serNum": 59120, "donAcc_type": "standard", "distance": 3.879, "atom1_id": "///A/964/N3", "atom2_id": "///B/77/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2049, "atom1_serNum": 20219, "atom2_serNum": 59120, "donAcc_type": "standard", "distance": 3.681, "atom1_id": "///A/965/O4'", "atom2_id": "///B/77/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2050, "atom1_serNum": 20223, "atom2_serNum": 59133, "donAcc_type": "acceptable", "distance": 2.926, "atom1_id": "///A/965/O2'", "atom2_id": "///B/78/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2051, "atom1_serNum": 20223, "atom2_serNum": 59149, "donAcc_type": "acceptable", "distance": 3.208, "atom1_id": "///A/965/O2'", "atom2_id": "///B/79/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2052, "atom1_serNum": 20223, "atom2_serNum": 59458, "donAcc_type": "acceptable", "distance": 3.227, "atom1_id": "///A/965/O2'", "atom2_id": "///B/94/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2053, "atom1_serNum": 20230, "atom2_serNum": 45291, "donAcc_type": "questionable", "distance": 3.200, "atom1_id": "///A/965/N6", "atom2_id": "///A/2297/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2054, "atom1_serNum": 20233, "atom2_serNum": 59133, "donAcc_type": "acceptable", "distance": 2.686, "atom1_id": "///A/965/N3", "atom2_id": "///B/78/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2055, "atom1_serNum": 20286, "atom2_serNum": 45313, "donAcc_type": "standard", "distance": 3.227, "atom1_id": "///A/968/O3'", "atom2_id": "///A/2298/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2056, "atom1_serNum": 20288, "atom2_serNum": 45313, "donAcc_type": "acceptable", "distance": 2.571, "atom1_id": "///A/968/O2'", "atom2_id": "///A/2298/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2057, "atom1_serNum": 20350, "atom2_serNum": 20364, "donAcc_type": "acceptable", "distance": 2.435, "atom1_id": "///A/971/O2'", "atom2_id": "///A/972/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2058, "atom1_serNum": 20372, "atom2_serNum": 20384, "donAcc_type": "acceptable", "distance": 2.718, "atom1_id": "///A/972/O2'", "atom2_id": "///A/973/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2059, "atom1_serNum": 20372, "atom2_serNum": 20385, "donAcc_type": "acceptable", "distance": 2.782, "atom1_id": "///A/972/O2'", "atom2_id": "///A/973/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2060, "atom1_serNum": 20392, "atom2_serNum": 20408, "donAcc_type": "acceptable", "distance": 2.672, "atom1_id": "///A/973/O2'", "atom2_id": "///A/974/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2061, "atom1_serNum": 20433, "atom2_serNum": 74976, "donAcc_type": "standard", "distance": 2.820, "atom1_id": "///A/975/O4'", "atom2_id": "///S/40/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2062, "atom1_serNum": 20457, "atom2_serNum": 74859, "donAcc_type": "acceptable", "distance": 3.138, "atom1_id": "///A/976/O2'", "atom2_id": "///S/25/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2063, "atom1_serNum": 20484, "atom2_serNum": 20504, "donAcc_type": "standard", "distance": 2.587, "atom1_id": "///A/977/O4", "atom2_id": "///A/978/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2064, "atom1_serNum": 20488, "atom2_serNum": 74854, "donAcc_type": "standard", "distance": 3.165, "atom1_id": "///A/978/OP1", "atom2_id": "///S/24/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2065, "atom1_serNum": 20490, "atom2_serNum": 74855, "donAcc_type": "standard", "distance": 3.211, "atom1_id": "///A/978/O5'", "atom2_id": "///S/24/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2066, "atom1_serNum": 20539, "atom2_serNum": 20551, "donAcc_type": "acceptable", "distance": 2.791, "atom1_id": "///A/980/O2'", "atom2_id": "///A/981/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2067, "atom1_serNum": 20539, "atom2_serNum": 20552, "donAcc_type": "acceptable", "distance": 2.660, "atom1_id": "///A/980/O2'", "atom2_id": "///A/981/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2068, "atom1_serNum": 20559, "atom2_serNum": 20575, "donAcc_type": "acceptable", "distance": 3.262, "atom1_id": "///A/981/O2'", "atom2_id": "///A/982/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2069, "atom1_serNum": 20652, "atom2_serNum": 24790, "donAcc_type": "acceptable", "distance": 3.960, "atom1_id": "///A/985/N2", "atom2_id": "///A/1232/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2070, "atom1_serNum": 20688, "atom2_serNum": 24765, "donAcc_type": "acceptable", "distance": 3.191, "atom1_id": "///A/987/O2'", "atom2_id": "///A/1231/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2071, "atom1_serNum": 20688, "atom2_serNum": 24767, "donAcc_type": "acceptable", "distance": 3.193, "atom1_id": "///A/987/O2'", "atom2_id": "///A/1231/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2072, "atom1_serNum": 20710, "atom2_serNum": 24745, "donAcc_type": "acceptable", "distance": 3.187, "atom1_id": "///A/988/O2'", "atom2_id": "///A/1230/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2073, "atom1_serNum": 20724, "atom2_serNum": 67438, "donAcc_type": "standard", "distance": 3.598, "atom1_id": "///A/989/OP1", "atom2_id": "///I/35/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2074, "atom1_serNum": 20773, "atom2_serNum": 20788, "donAcc_type": "acceptable", "distance": 2.928, "atom1_id": "///A/991/O2'", "atom2_id": "///A/992/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2075, "atom1_serNum": 20802, "atom2_serNum": 21340, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///A/992/O6", "atom2_id": "///A/1017/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2076, "atom1_serNum": 20803, "atom2_serNum": 21338, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///A/992/N1", "atom2_id": "///A/1017/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2077, "atom1_serNum": 20805, "atom2_serNum": 21337, "donAcc_type": "standard", "distance": 2.788, "atom1_id": "///A/992/N2", "atom2_id": "///A/1017/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2078, "atom1_serNum": 20818, "atom2_serNum": 21623, "donAcc_type": "acceptable", "distance": 3.305, "atom1_id": "///A/993/O2'", "atom2_id": "///A/1030/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2079, "atom1_serNum": 20825, "atom2_serNum": 21320, "donAcc_type": "standard", "distance": 2.973, "atom1_id": "///A/993/N6", "atom2_id": "///A/1016/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2080, "atom1_serNum": 20826, "atom2_serNum": 21318, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///A/993/N1", "atom2_id": "///A/1016/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2081, "atom1_serNum": 20838, "atom2_serNum": 21130, "donAcc_type": "standard", "distance": 2.996, "atom1_id": "///A/994/O3'", "atom2_id": "///A/1007/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2082, "atom1_serNum": 20844, "atom2_serNum": 21300, "donAcc_type": "standard", "distance": 2.756, "atom1_id": "///A/994/O2", "atom2_id": "///A/1015/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2083, "atom1_serNum": 20844, "atom2_serNum": 21619, "donAcc_type": "acceptable", "distance": 2.437, "atom1_id": "///A/994/O2", "atom2_id": "///A/1030/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2084, "atom1_serNum": 20845, "atom2_serNum": 21298, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/994/N3", "atom2_id": "///A/1015/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2085, "atom1_serNum": 20847, "atom2_serNum": 21297, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///A/994/N4", "atom2_id": "///A/1015/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2086, "atom1_serNum": 20851, "atom2_serNum": 21130, "donAcc_type": "standard", "distance": 2.367, "atom1_id": "///A/995/OP1", "atom2_id": "///A/1007/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2087, "atom1_serNum": 20865, "atom2_serNum": 21276, "donAcc_type": "standard", "distance": 2.779, "atom1_id": "///A/995/N3", "atom2_id": "///A/1014/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2088, "atom1_serNum": 20867, "atom2_serNum": 21275, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///A/995/O4", "atom2_id": "///A/1014/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2089, "atom1_serNum": 20887, "atom2_serNum": 21253, "donAcc_type": "standard", "distance": 2.990, "atom1_id": "///A/996/O6", "atom2_id": "///A/1013/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2090, "atom1_serNum": 20888, "atom2_serNum": 21252, "donAcc_type": "standard", "distance": 2.802, "atom1_id": "///A/996/N1", "atom2_id": "///A/1013/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2091, "atom1_serNum": 20907, "atom2_serNum": 21235, "donAcc_type": "standard", "distance": 2.716, "atom1_id": "///A/997/O2", "atom2_id": "///A/1012/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2092, "atom1_serNum": 20908, "atom2_serNum": 21233, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///A/997/N3", "atom2_id": "///A/1012/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2093, "atom1_serNum": 20910, "atom2_serNum": 21232, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///A/997/N4", "atom2_id": "///A/1012/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2094, "atom1_serNum": 20930, "atom2_serNum": 21212, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///A/998/O6", "atom2_id": "///A/1011/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2095, "atom1_serNum": 20931, "atom2_serNum": 21210, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///A/998/N1", "atom2_id": "///A/1011/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2096, "atom1_serNum": 20933, "atom2_serNum": 21209, "donAcc_type": "standard", "distance": 2.722, "atom1_id": "///A/998/N2", "atom2_id": "///A/1011/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2097, "atom1_serNum": 20946, "atom2_serNum": 20961, "donAcc_type": "acceptable", "distance": 2.636, "atom1_id": "///A/999/O2'", "atom2_id": "///A/1000/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2098, "atom1_serNum": 20946, "atom2_serNum": 20964, "donAcc_type": "acceptable", "distance": 3.067, "atom1_id": "///A/999/O2'", "atom2_id": "///A/1000/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2099, "atom1_serNum": 20953, "atom2_serNum": 21190, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///A/999/N6", "atom2_id": "///A/1010/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2100, "atom1_serNum": 20968, "atom2_serNum": 45402, "donAcc_type": "acceptable", "distance": 3.925, "atom1_id": "///A/1000/O2'", "atom2_id": "///A/2302/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2101, "atom1_serNum": 20968, "atom2_serNum": 45424, "donAcc_type": "acceptable", "distance": 3.695, "atom1_id": "///A/1000/O2'", "atom2_id": "///A/2303/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2102, "atom1_serNum": 20975, "atom2_serNum": 21170, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///A/1000/O6", "atom2_id": "///A/1009/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2103, "atom1_serNum": 20975, "atom2_serNum": 21172, "donAcc_type": "questionable", "distance": 2.432, "atom1_id": "///A/1000/O6", "atom2_id": "///A/1009/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2104, "atom1_serNum": 20978, "atom2_serNum": 21169, "donAcc_type": "standard", "distance": 2.984, "atom1_id": "///A/1000/N2", "atom2_id": "///A/1009/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2105, "atom1_serNum": 20978, "atom2_serNum": 45426, "donAcc_type": "standard", "distance": 3.552, "atom1_id": "///A/1000/N2", "atom2_id": "///A/2303/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2106, "atom1_serNum": 20996, "atom2_serNum": 21151, "donAcc_type": "standard", "distance": 2.722, "atom1_id": "///A/1001/N3", "atom2_id": "///A/1008/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2107, "atom1_serNum": 20998, "atom2_serNum": 21150, "donAcc_type": "standard", "distance": 3.099, "atom1_id": "///A/1001/O4", "atom2_id": "///A/1008/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2108, "atom1_serNum": 21011, "atom2_serNum": 21025, "donAcc_type": "acceptable", "distance": 2.625, "atom1_id": "///A/1002/O2'", "atom2_id": "///A/1003/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2109, "atom1_serNum": 21015, "atom2_serNum": 21056, "donAcc_type": "acceptable", "distance": 2.945, "atom1_id": "///A/1002/N7", "atom2_id": "///A/1004/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2110, "atom1_serNum": 21018, "atom2_serNum": 21056, "donAcc_type": "acceptable", "distance": 2.343, "atom1_id": "///A/1002/O6", "atom2_id": "///A/1004/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2111, "atom1_serNum": 21019, "atom2_serNum": 21090, "donAcc_type": "standard", "distance": 3.705, "atom1_id": "///A/1002/N1", "atom2_id": "///A/1006/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2112, "atom1_serNum": 21021, "atom2_serNum": 21102, "donAcc_type": "standard", "distance": 3.074, "atom1_id": "///A/1002/N2", "atom2_id": "///A/1006/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2113, "atom1_serNum": 21047, "atom2_serNum": 21072, "donAcc_type": "questionable", "distance": 2.648, "atom1_id": "///A/1004/OP1", "atom2_id": "///A/1005/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2114, "atom1_serNum": 21118, "atom2_serNum": 21157, "donAcc_type": "questionable", "distance": 2.906, "atom1_id": "///A/1007/O3'", "atom2_id": "///A/1009/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2115, "atom1_serNum": 21143, "atom2_serNum": 21161, "donAcc_type": "acceptable", "distance": 2.790, "atom1_id": "///A/1008/O2'", "atom2_id": "///A/1009/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2116, "atom1_serNum": 21165, "atom2_serNum": 21176, "donAcc_type": "acceptable", "distance": 2.245, "atom1_id": "///A/1009/O2'", "atom2_id": "///A/1010/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2117, "atom1_serNum": 21185, "atom2_serNum": 45394, "donAcc_type": "acceptable", "distance": 3.021, "atom1_id": "///A/1010/O2'", "atom2_id": "///A/2302/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2118, "atom1_serNum": 21205, "atom2_serNum": 45398, "donAcc_type": "acceptable", "distance": 2.442, "atom1_id": "///A/1011/O2'", "atom2_id": "///A/2302/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2119, "atom1_serNum": 21248, "atom2_serNum": 21264, "donAcc_type": "acceptable", "distance": 3.276, "atom1_id": "///A/1013/O2'", "atom2_id": "///A/1014/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2120, "atom1_serNum": 21290, "atom2_serNum": 21309, "donAcc_type": "acceptable", "distance": 3.121, "atom1_id": "///A/1015/O2'", "atom2_id": "///A/1016/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2121, "atom1_serNum": 21300, "atom2_serNum": 21633, "donAcc_type": "standard", "distance": 3.007, "atom1_id": "///A/1015/N2", "atom2_id": "///A/1031/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2122, "atom1_serNum": 21304, "atom2_serNum": 74765, "donAcc_type": "standard", "distance": 3.838, "atom1_id": "///A/1016/OP1", "atom2_id": "///S/14/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2123, "atom1_serNum": 21324, "atom2_serNum": 21398, "donAcc_type": "acceptable", "distance": 2.521, "atom1_id": "///A/1017/OP1", "atom2_id": "///A/1020/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2124, "atom1_serNum": 21324, "atom2_serNum": 21732, "donAcc_type": "standard", "distance": 3.341, "atom1_id": "///A/1017/OP1", "atom2_id": "///A/1035/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2125, "atom1_serNum": 21333, "atom2_serNum": 21607, "donAcc_type": "acceptable", "distance": 3.261, "atom1_id": "///A/1017/O2'", "atom2_id": "///A/1029/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2126, "atom1_serNum": 21345, "atom2_serNum": 21376, "donAcc_type": "acceptable", "distance": 2.730, "atom1_id": "///A/1018/OP2", "atom2_id": "///A/1019/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2127, "atom1_serNum": 21368, "atom2_serNum": 71348, "donAcc_type": "standard", "distance": 3.186, "atom1_id": "///A/1019/OP2", "atom2_id": "///M/80/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2128, "atom1_serNum": 21376, "atom2_serNum": 24689, "donAcc_type": "acceptable", "distance": 3.640, "atom1_id": "///A/1019/O2'", "atom2_id": "///A/1227/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2129, "atom1_serNum": 21386, "atom2_serNum": 24712, "donAcc_type": "standard", "distance": 3.923, "atom1_id": "///A/1019/N3", "atom2_id": "///A/1228/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2130, "atom1_serNum": 21391, "atom2_serNum": 24689, "donAcc_type": "standard", "distance": 3.125, "atom1_id": "///A/1020/O5'", "atom2_id": "///A/1227/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2131, "atom1_serNum": 21394, "atom2_serNum": 21754, "donAcc_type": "standard", "distance": 3.353, "atom1_id": "///A/1020/O4'", "atom2_id": "///A/1036/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2132, "atom1_serNum": 21394, "atom2_serNum": 24689, "donAcc_type": "standard", "distance": 3.276, "atom1_id": "///A/1020/O4'", "atom2_id": "///A/1227/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2133, "atom1_serNum": 21398, "atom2_serNum": 21734, "donAcc_type": "acceptable", "distance": 2.961, "atom1_id": "///A/1020/O2'", "atom2_id": "///A/1035/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2134, "atom1_serNum": 21406, "atom2_serNum": 21724, "donAcc_type": "acceptable", "distance": 3.306, "atom1_id": "///A/1020/N1", "atom2_id": "///A/1035/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2135, "atom1_serNum": 21408, "atom2_serNum": 21754, "donAcc_type": "standard", "distance": 3.098, "atom1_id": "///A/1020/N3", "atom2_id": "///A/1036/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2136, "atom1_serNum": 21424, "atom2_serNum": 21734, "donAcc_type": "standard", "distance": 3.654, "atom1_id": "///A/1021/N7", "atom2_id": "///A/1035/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2137, "atom1_serNum": 21427, "atom2_serNum": 21712, "donAcc_type": "standard", "distance": 3.814, "atom1_id": "///A/1021/N6", "atom2_id": "///A/1034/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2138, "atom1_serNum": 21428, "atom2_serNum": 24148, "donAcc_type": "acceptable", "distance": 3.790, "atom1_id": "///A/1021/N1", "atom2_id": "///A/1202/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2139, "atom1_serNum": 21442, "atom2_serNum": 24126, "donAcc_type": "acceptable", "distance": 2.703, "atom1_id": "///A/1022/O2'", "atom2_id": "///A/1201/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2140, "atom1_serNum": 21449, "atom2_serNum": 21689, "donAcc_type": "standard", "distance": 2.969, "atom1_id": "///A/1022/O6", "atom2_id": "///A/1033/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2141, "atom1_serNum": 21450, "atom2_serNum": 21687, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///A/1022/N1", "atom2_id": "///A/1033/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2142, "atom1_serNum": 21452, "atom2_serNum": 21686, "donAcc_type": "standard", "distance": 2.818, "atom1_id": "///A/1022/N2", "atom2_id": "///A/1033/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2143, "atom1_serNum": 21452, "atom2_serNum": 24136, "donAcc_type": "standard", "distance": 3.807, "atom1_id": "///A/1022/N2", "atom2_id": "///A/1201/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2144, "atom1_serNum": 21465, "atom2_serNum": 21987, "donAcc_type": "acceptable", "distance": 3.181, "atom1_id": "///A/1023/O2'", "atom2_id": "///A/1047/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2145, "atom1_serNum": 21472, "atom2_serNum": 21669, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///A/1023/O6", "atom2_id": "///A/1032/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2146, "atom1_serNum": 21473, "atom2_serNum": 21667, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///A/1023/N1", "atom2_id": "///A/1032/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2147, "atom1_serNum": 21475, "atom2_serNum": 21666, "donAcc_type": "standard", "distance": 2.746, "atom1_id": "///A/1023/N2", "atom2_id": "///A/1032/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2148, "atom1_serNum": 21475, "atom2_serNum": 21989, "donAcc_type": "standard", "distance": 3.424, "atom1_id": "///A/1023/N2", "atom2_id": "///A/1047/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2149, "atom1_serNum": 21488, "atom2_serNum": 22001, "donAcc_type": "acceptable", "distance": 3.414, "atom1_id": "///A/1024/O2'", "atom2_id": "///A/1048/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2150, "atom1_serNum": 21495, "atom2_serNum": 21649, "donAcc_type": "standard", "distance": 2.954, "atom1_id": "///A/1024/O6", "atom2_id": "///A/1031/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2151, "atom1_serNum": 21496, "atom2_serNum": 21647, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///A/1024/N1", "atom2_id": "///A/1031/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2152, "atom1_serNum": 21498, "atom2_serNum": 21646, "donAcc_type": "standard", "distance": 2.810, "atom1_id": "///A/1024/N2", "atom2_id": "///A/1031/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2153, "atom1_serNum": 21511, "atom2_serNum": 21524, "donAcc_type": "acceptable", "distance": 3.092, "atom1_id": "///A/1025/O2'", "atom2_id": "///A/1026/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2154, "atom1_serNum": 21524, "atom2_serNum": 21584, "donAcc_type": "standard", "distance": 2.979, "atom1_id": "///A/1026/OP1", "atom2_id": "///A/1028/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2155, "atom1_serNum": 21533, "atom2_serNum": 40665, "donAcc_type": "acceptable", "distance": 2.532, "atom1_id": "///A/1026/O2'", "atom2_id": "///A/2066/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2156, "atom1_serNum": 21547, "atom2_serNum": 21582, "donAcc_type": "questionable", "distance": 3.106, "atom1_id": "///A/1027/OP2", "atom2_id": "///A/1028/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2157, "atom1_serNum": 21555, "atom2_serNum": 40645, "donAcc_type": "acceptable", "distance": 2.283, "atom1_id": "///A/1027/O2'", "atom2_id": "///A/2065/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2158, "atom1_serNum": 21555, "atom2_serNum": 40661, "donAcc_type": "acceptable", "distance": 3.252, "atom1_id": "///A/1027/O2'", "atom2_id": "///A/2066/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2159, "atom1_serNum": 21563, "atom2_serNum": 40447, "donAcc_type": "acceptable", "distance": 3.532, "atom1_id": "///A/1027/N1", "atom2_id": "///A/2056/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2160, "atom1_serNum": 21604, "atom2_serNum": 21626, "donAcc_type": "standard", "distance": 2.343, "atom1_id": "///A/1029/N6", "atom2_id": "///A/1030/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2161, "atom1_serNum": 21611, "atom2_serNum": 21649, "donAcc_type": "standard", "distance": 2.976, "atom1_id": "///A/1030/OP2", "atom2_id": "///A/1031/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2162, "atom1_serNum": 21662, "atom2_serNum": 21979, "donAcc_type": "acceptable", "distance": 3.466, "atom1_id": "///A/1032/O2'", "atom2_id": "///A/1047/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2163, "atom1_serNum": 21682, "atom2_serNum": 21967, "donAcc_type": "acceptable", "distance": 2.680, "atom1_id": "///A/1033/O2'", "atom2_id": "///A/1046/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2164, "atom1_serNum": 21693, "atom2_serNum": 74744, "donAcc_type": "standard", "distance": 3.330, "atom1_id": "///A/1034/OP1", "atom2_id": "///S/11/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2165, "atom1_serNum": 21694, "atom2_serNum": 74749, "donAcc_type": "acceptable", "distance": 2.442, "atom1_id": "///A/1034/OP2", "atom2_id": "///S/11/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2166, "atom1_serNum": 21695, "atom2_serNum": 74749, "donAcc_type": "acceptable", "distance": 2.753, "atom1_id": "///A/1034/O5'", "atom2_id": "///S/11/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2167, "atom1_serNum": 21702, "atom2_serNum": 24166, "donAcc_type": "acceptable", "distance": 3.601, "atom1_id": "///A/1034/O2'", "atom2_id": "///A/1203/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2168, "atom1_serNum": 21715, "atom2_serNum": 74902, "donAcc_type": "acceptable", "distance": 2.562, "atom1_id": "///A/1035/OP1", "atom2_id": "///S/31/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2169, "atom1_serNum": 21724, "atom2_serNum": 21739, "donAcc_type": "acceptable", "distance": 2.904, "atom1_id": "///A/1035/O2'", "atom2_id": "///A/1036/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2170, "atom1_serNum": 21739, "atom2_serNum": 24671, "donAcc_type": "questionable", "distance": 3.218, "atom1_id": "///A/1036/OP2", "atom2_id": "///A/1227/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2171, "atom1_serNum": 21745, "atom2_serNum": 21781, "donAcc_type": "questionable", "distance": 2.773, "atom1_id": "///A/1036/O3'", "atom2_id": "///A/1038/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2172, "atom1_serNum": 21747, "atom2_serNum": 21781, "donAcc_type": "acceptable", "distance": 3.042, "atom1_id": "///A/1036/O2'", "atom2_id": "///A/1038/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2173, "atom1_serNum": 21757, "atom2_serNum": 71301, "donAcc_type": "standard", "distance": 3.827, "atom1_id": "///A/1036/N3", "atom2_id": "///M/75/NH1", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 2174, "atom1_serNum": 21761, "atom2_serNum": 24671, "donAcc_type": "questionable", "distance": 2.755, "atom1_id": "///A/1037/OP2", "atom2_id": "///A/1227/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2175, "atom1_serNum": 21769, "atom2_serNum": 71400, "donAcc_type": "acceptable", "distance": 3.811, "atom1_id": "///A/1037/O2'", "atom2_id": "///M/86/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2176, "atom1_serNum": 21773, "atom2_serNum": 24309, "donAcc_type": "standard", "distance": 2.756, "atom1_id": "///A/1037/O2", "atom2_id": "///A/1209/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2177, "atom1_serNum": 21774, "atom2_serNum": 24307, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/1037/N3", "atom2_id": "///A/1209/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2178, "atom1_serNum": 21776, "atom2_serNum": 24306, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///A/1037/N4", "atom2_id": "///A/1209/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2179, "atom1_serNum": 21780, "atom2_serNum": 71301, "donAcc_type": "standard", "distance": 3.809, "atom1_id": "///A/1038/OP1", "atom2_id": "///M/75/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2180, "atom1_serNum": 21785, "atom2_serNum": 71400, "donAcc_type": "standard", "distance": 3.818, "atom1_id": "///A/1038/O4'", "atom2_id": "///M/86/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2181, "atom1_serNum": 21793, "atom2_serNum": 24286, "donAcc_type": "standard", "distance": 2.757, "atom1_id": "///A/1038/O2", "atom2_id": "///A/1208/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2182, "atom1_serNum": 21794, "atom2_serNum": 24284, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///A/1038/N3", "atom2_id": "///A/1208/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2183, "atom1_serNum": 21796, "atom2_serNum": 24283, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///A/1038/N4", "atom2_id": "///A/1208/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2184, "atom1_serNum": 21800, "atom2_serNum": 70239, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///A/1039/OP1", "atom2_id": "///L/50/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2185, "atom1_serNum": 21805, "atom2_serNum": 71414, "donAcc_type": "standard", "distance": 3.305, "atom1_id": "///A/1039/O4'", "atom2_id": "///M/88/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2186, "atom1_serNum": 21816, "atom2_serNum": 24263, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///A/1039/O6", "atom2_id": "///A/1207/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2187, "atom1_serNum": 21817, "atom2_serNum": 24261, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///A/1039/N1", "atom2_id": "///A/1207/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2188, "atom1_serNum": 21819, "atom2_serNum": 24260, "donAcc_type": "standard", "distance": 2.800, "atom1_id": "///A/1039/N2", "atom2_id": "///A/1207/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2189, "atom1_serNum": 21820, "atom2_serNum": 71434, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///A/1039/N3", "atom2_id": "///M/90/NE2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 2190, "atom1_serNum": 21824, "atom2_serNum": 70274, "donAcc_type": "standard", "distance": 2.852, "atom1_id": "///A/1040/OP2", "atom2_id": "///L/54/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2191, "atom1_serNum": 21832, "atom2_serNum": 21863, "donAcc_type": "acceptable", "distance": 2.877, "atom1_id": "///A/1040/O2'", "atom2_id": "///A/1042/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2192, "atom1_serNum": 21836, "atom2_serNum": 24243, "donAcc_type": "standard", "distance": 2.766, "atom1_id": "///A/1040/O2", "atom2_id": "///A/1206/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2193, "atom1_serNum": 21836, "atom2_serNum": 70826, "donAcc_type": "standard", "distance": 3.642, "atom1_id": "///A/1040/O2", "atom2_id": "///M/10/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2194, "atom1_serNum": 21837, "atom2_serNum": 24241, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///A/1040/N3", "atom2_id": "///A/1206/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2195, "atom1_serNum": 21839, "atom2_serNum": 24240, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///A/1040/N4", "atom2_id": "///A/1206/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2196, "atom1_serNum": 21844, "atom2_serNum": 70274, "donAcc_type": "standard", "distance": 3.587, "atom1_id": "///A/1041/OP2", "atom2_id": "///L/54/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2197, "atom1_serNum": 21879, "atom2_serNum": 24220, "donAcc_type": "standard", "distance": 2.984, "atom1_id": "///A/1042/N6", "atom2_id": "///A/1205/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2198, "atom1_serNum": 21880, "atom2_serNum": 24218, "donAcc_type": "standard", "distance": 2.830, "atom1_id": "///A/1042/N1", "atom2_id": "///A/1205/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2199, "atom1_serNum": 21885, "atom2_serNum": 70583, "donAcc_type": "standard", "distance": 3.228, "atom1_id": "///A/1043/OP1", "atom2_id": "///L/93/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2200, "atom1_serNum": 21886, "atom2_serNum": 70314, "donAcc_type": "standard", "distance": 3.340, "atom1_id": "///A/1043/OP2", "atom2_id": "///L/58/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2201, "atom1_serNum": 21901, "atom2_serNum": 24200, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///A/1043/O6", "atom2_id": "///A/1204/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2202, "atom1_serNum": 21902, "atom2_serNum": 24198, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///A/1043/N1", "atom2_id": "///A/1204/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2203, "atom1_serNum": 21904, "atom2_serNum": 24197, "donAcc_type": "standard", "distance": 2.766, "atom1_id": "///A/1043/N2", "atom2_id": "///A/1204/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2204, "atom1_serNum": 21908, "atom2_serNum": 70524, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///A/1044/OP1", "atom2_id": "///L/84/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2205, "atom1_serNum": 21909, "atom2_serNum": 70315, "donAcc_type": "standard", "distance": 3.859, "atom1_id": "///A/1044/OP2", "atom2_id": "///L/58/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2206, "atom1_serNum": 21921, "atom2_serNum": 24180, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///A/1044/O2", "atom2_id": "///A/1203/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2207, "atom1_serNum": 21922, "atom2_serNum": 24178, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/1044/N3", "atom2_id": "///A/1203/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2208, "atom1_serNum": 21924, "atom2_serNum": 24177, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///A/1044/N4", "atom2_id": "///A/1203/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2209, "atom1_serNum": 21941, "atom2_serNum": 24133, "donAcc_type": "standard", "distance": 2.693, "atom1_id": "///A/1045/O2", "atom2_id": "///A/1201/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2210, "atom1_serNum": 21942, "atom2_serNum": 24130, "donAcc_type": "standard", "distance": 3.177, "atom1_id": "///A/1045/N3", "atom2_id": "///A/1201/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2211, "atom1_serNum": 21949, "atom2_serNum": 24111, "donAcc_type": "standard", "distance": 2.200, "atom1_id": "///A/1046/OP2", "atom2_id": "///A/1200/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2212, "atom1_serNum": 21983, "atom2_serNum": 24113, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///A/1047/N7", "atom2_id": "///A/1200/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2213, "atom1_serNum": 21986, "atom2_serNum": 24103, "donAcc_type": "acceptable", "distance": 3.354, "atom1_id": "///A/1047/N6", "atom2_id": "///A/1200/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2214, "atom1_serNum": 21986, "atom2_serNum": 24114, "donAcc_type": "standard", "distance": 2.982, "atom1_id": "///A/1047/N6", "atom2_id": "///A/1200/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2215, "atom1_serNum": 22008, "atom2_serNum": 24090, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/1048/O6", "atom2_id": "///A/1199/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2216, "atom1_serNum": 22009, "atom2_serNum": 24088, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///A/1048/N1", "atom2_id": "///A/1199/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2217, "atom1_serNum": 22011, "atom2_serNum": 24087, "donAcc_type": "standard", "distance": 2.814, "atom1_id": "///A/1048/N2", "atom2_id": "///A/1199/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2218, "atom1_serNum": 22024, "atom2_serNum": 22179, "donAcc_type": "acceptable", "distance": 2.736, "atom1_id": "///A/1049/O2'", "atom2_id": "///A/1056/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2219, "atom1_serNum": 22031, "atom2_serNum": 24070, "donAcc_type": "standard", "distance": 2.962, "atom1_id": "///A/1049/O6", "atom2_id": "///A/1198/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2220, "atom1_serNum": 22032, "atom2_serNum": 24068, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///A/1049/N1", "atom2_id": "///A/1198/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2221, "atom1_serNum": 22034, "atom2_serNum": 22181, "donAcc_type": "standard", "distance": 3.133, "atom1_id": "///A/1049/N2", "atom2_id": "///A/1056/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2222, "atom1_serNum": 22034, "atom2_serNum": 24067, "donAcc_type": "standard", "distance": 2.719, "atom1_id": "///A/1049/N2", "atom2_id": "///A/1198/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2223, "atom1_serNum": 22052, "atom2_serNum": 24049, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/1050/N3", "atom2_id": "///A/1197/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2224, "atom1_serNum": 22054, "atom2_serNum": 24048, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///A/1050/O4", "atom2_id": "///A/1197/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2225, "atom1_serNum": 22071, "atom2_serNum": 23774, "donAcc_type": "standard", "distance": 3.285, "atom1_id": "///A/1051/O2", "atom2_id": "///A/1184/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2226, "atom1_serNum": 22072, "atom2_serNum": 23772, "donAcc_type": "standard", "distance": 3.274, "atom1_id": "///A/1051/N3", "atom2_id": "///A/1184/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2227, "atom1_serNum": 22072, "atom2_serNum": 23774, "donAcc_type": "standard", "distance": 3.227, "atom1_id": "///A/1051/N3", "atom2_id": "///A/1184/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2228, "atom1_serNum": 22074, "atom2_serNum": 23771, "donAcc_type": "standard", "distance": 3.137, "atom1_id": "///A/1051/N4", "atom2_id": "///A/1184/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2229, "atom1_serNum": 22087, "atom2_serNum": 22100, "donAcc_type": "acceptable", "distance": 2.634, "atom1_id": "///A/1052/O2'", "atom2_id": "///A/1053/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2230, "atom1_serNum": 22087, "atom2_serNum": 22103, "donAcc_type": "acceptable", "distance": 3.042, "atom1_id": "///A/1052/O2'", "atom2_id": "///A/1053/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2231, "atom1_serNum": 22087, "atom2_serNum": 66019, "donAcc_type": "acceptable", "distance": 3.264, "atom1_id": "///A/1052/O2'", "atom2_id": "///G/109/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2232, "atom1_serNum": 22091, "atom2_serNum": 23751, "donAcc_type": "standard", "distance": 2.763, "atom1_id": "///A/1052/O2", "atom2_id": "///A/1183/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2233, "atom1_serNum": 22092, "atom2_serNum": 23749, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///A/1052/N3", "atom2_id": "///A/1183/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2234, "atom1_serNum": 22094, "atom2_serNum": 23748, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///A/1052/N4", "atom2_id": "///A/1183/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2235, "atom1_serNum": 22099, "atom2_serNum": 22127, "donAcc_type": "acceptable", "distance": 2.768, "atom1_id": "///A/1053/OP2", "atom2_id": "///A/1054/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2236, "atom1_serNum": 22111, "atom2_serNum": 23728, "donAcc_type": "standard", "distance": 2.841, "atom1_id": "///A/1053/O2", "atom2_id": "///A/1182/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2237, "atom1_serNum": 22112, "atom2_serNum": 23726, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///A/1053/N3", "atom2_id": "///A/1182/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2238, "atom1_serNum": 22114, "atom2_serNum": 23725, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///A/1053/N4", "atom2_id": "///A/1182/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2239, "atom1_serNum": 22140, "atom2_serNum": 65481, "donAcc_type": "standard", "distance": 3.081, "atom1_id": "///A/1055/OP1", "atom2_id": "///G/40/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2240, "atom1_serNum": 22159, "atom2_serNum": 24083, "donAcc_type": "acceptable", "distance": 2.665, "atom1_id": "///A/1055/N3", "atom2_id": "///A/1199/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2241, "atom1_serNum": 22162, "atom2_serNum": 70388, "donAcc_type": "standard", "distance": 3.186, "atom1_id": "///A/1056/OP1", "atom2_id": "///L/66/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2242, "atom1_serNum": 22171, "atom2_serNum": 24063, "donAcc_type": "acceptable", "distance": 2.548, "atom1_id": "///A/1056/O2'", "atom2_id": "///A/1198/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2243, "atom1_serNum": 22171, "atom2_serNum": 24067, "donAcc_type": "acceptable", "distance": 3.276, "atom1_id": "///A/1056/O2'", "atom2_id": "///A/1198/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2244, "atom1_serNum": 22184, "atom2_serNum": 70448, "donAcc_type": "acceptable", "distance": 2.690, "atom1_id": "///A/1057/OP1", "atom2_id": "///L/75/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2245, "atom1_serNum": 22184, "atom2_serNum": 70461, "donAcc_type": "standard", "distance": 3.289, "atom1_id": "///A/1057/OP1", "atom2_id": "///L/77/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2246, "atom1_serNum": 22185, "atom2_serNum": 70388, "donAcc_type": "standard", "distance": 3.314, "atom1_id": "///A/1057/OP2", "atom2_id": "///L/66/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2247, "atom1_serNum": 22185, "atom2_serNum": 70414, "donAcc_type": "standard", "distance": 3.351, "atom1_id": "///A/1057/OP2", "atom2_id": "///L/70/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2248, "atom1_serNum": 22193, "atom2_serNum": 22232, "donAcc_type": "acceptable", "distance": 3.503, "atom1_id": "///A/1057/O2'", "atom2_id": "///A/1059/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2249, "atom1_serNum": 22200, "atom2_serNum": 24028, "donAcc_type": "standard", "distance": 2.964, "atom1_id": "///A/1057/O6", "atom2_id": "///A/1196/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2250, "atom1_serNum": 22201, "atom2_serNum": 24026, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/1057/N1", "atom2_id": "///A/1196/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2251, "atom1_serNum": 22203, "atom2_serNum": 24025, "donAcc_type": "standard", "distance": 2.706, "atom1_id": "///A/1057/N2", "atom2_id": "///A/1196/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2252, "atom1_serNum": 22207, "atom2_serNum": 70448, "donAcc_type": "acceptable", "distance": 3.662, "atom1_id": "///A/1058/OP1", "atom2_id": "///L/75/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2253, "atom1_serNum": 22208, "atom2_serNum": 70413, "donAcc_type": "standard", "distance": 3.404, "atom1_id": "///A/1058/OP2", "atom2_id": "///L/70/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2254, "atom1_serNum": 22216, "atom2_serNum": 22227, "donAcc_type": "acceptable", "distance": 2.905, "atom1_id": "///A/1058/O2'", "atom2_id": "///A/1059/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2255, "atom1_serNum": 22220, "atom2_serNum": 23863, "donAcc_type": "questionable", "distance": 3.203, "atom1_id": "///A/1058/O2", "atom2_id": "///A/1189/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2256, "atom1_serNum": 22220, "atom2_serNum": 65394, "donAcc_type": "standard", "distance": 3.267, "atom1_id": "///A/1058/O2", "atom2_id": "///G/28/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2257, "atom1_serNum": 22221, "atom2_serNum": 23876, "donAcc_type": "standard", "distance": 3.827, "atom1_id": "///A/1058/N3", "atom2_id": "///A/1189/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2258, "atom1_serNum": 22223, "atom2_serNum": 65415, "donAcc_type": "acceptable", "distance": 2.942, "atom1_id": "///A/1058/O4", "atom2_id": "///G/31/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2259, "atom1_serNum": 22243, "atom2_serNum": 24008, "donAcc_type": "standard", "distance": 2.966, "atom1_id": "///A/1059/N6", "atom2_id": "///A/1195/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2260, "atom1_serNum": 22244, "atom2_serNum": 24006, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///A/1059/N1", "atom2_id": "///A/1195/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2261, "atom1_serNum": 22263, "atom2_serNum": 23987, "donAcc_type": "standard", "distance": 2.828, "atom1_id": "///A/1060/N3", "atom2_id": "///A/1194/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2262, "atom1_serNum": 22265, "atom2_serNum": 22285, "donAcc_type": "standard", "distance": 3.336, "atom1_id": "///A/1060/O4", "atom2_id": "///A/1061/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2263, "atom1_serNum": 22265, "atom2_serNum": 23986, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/1060/O4", "atom2_id": "///A/1194/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2264, "atom1_serNum": 22285, "atom2_serNum": 23966, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///A/1061/N6", "atom2_id": "///A/1193/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2265, "atom1_serNum": 22286, "atom2_serNum": 23964, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///A/1061/N1", "atom2_id": "///A/1193/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2266, "atom1_serNum": 22300, "atom2_serNum": 22316, "donAcc_type": "acceptable", "distance": 3.027, "atom1_id": "///A/1062/O2'", "atom2_id": "///A/1063/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2267, "atom1_serNum": 22304, "atom2_serNum": 23946, "donAcc_type": "standard", "distance": 2.639, "atom1_id": "///A/1062/O2", "atom2_id": "///A/1192/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2268, "atom1_serNum": 22305, "atom2_serNum": 23944, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///A/1062/N3", "atom2_id": "///A/1192/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2269, "atom1_serNum": 22305, "atom2_serNum": 23964, "donAcc_type": "standard", "distance": 3.355, "atom1_id": "///A/1062/N3", "atom2_id": "///A/1193/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2270, "atom1_serNum": 22307, "atom2_serNum": 23943, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///A/1062/N4", "atom2_id": "///A/1192/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2271, "atom1_serNum": 22307, "atom2_serNum": 23966, "donAcc_type": "standard", "distance": 3.575, "atom1_id": "///A/1062/N4", "atom2_id": "///A/1193/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2272, "atom1_serNum": 22320, "atom2_serNum": 22339, "donAcc_type": "acceptable", "distance": 2.958, "atom1_id": "///A/1063/O2'", "atom2_id": "///A/1064/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2273, "atom1_serNum": 22327, "atom2_serNum": 23923, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///A/1063/O6", "atom2_id": "///A/1191/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2274, "atom1_serNum": 22328, "atom2_serNum": 23921, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///A/1063/N1", "atom2_id": "///A/1191/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2275, "atom1_serNum": 22330, "atom2_serNum": 23920, "donAcc_type": "standard", "distance": 2.728, "atom1_id": "///A/1063/N2", "atom2_id": "///A/1191/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2276, "atom1_serNum": 22341, "atom2_serNum": 23386, "donAcc_type": "standard", "distance": 3.915, "atom1_id": "///A/1064/O3'", "atom2_id": "///A/1166/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2277, "atom1_serNum": 22348, "atom2_serNum": 23902, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///A/1064/N3", "atom2_id": "///A/1190/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2278, "atom1_serNum": 22348, "atom2_serNum": 23921, "donAcc_type": "standard", "distance": 3.332, "atom1_id": "///A/1064/N3", "atom2_id": "///A/1191/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2279, "atom1_serNum": 22350, "atom2_serNum": 23901, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///A/1064/O4", "atom2_id": "///A/1190/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2280, "atom1_serNum": 22354, "atom2_serNum": 22715, "donAcc_type": "acceptable", "distance": 2.645, "atom1_id": "///A/1065/OP1", "atom2_id": "///A/1081/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2281, "atom1_serNum": 22363, "atom2_serNum": 23399, "donAcc_type": "acceptable", "distance": 3.420, "atom1_id": "///A/1065/O2'", "atom2_id": "///A/1167/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2282, "atom1_serNum": 22367, "atom2_serNum": 23857, "donAcc_type": "standard", "distance": 3.485, "atom1_id": "///A/1065/O2", "atom2_id": "///A/1188/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2283, "atom1_serNum": 22368, "atom2_serNum": 23857, "donAcc_type": "questionable", "distance": 2.813, "atom1_id": "///A/1065/N3", "atom2_id": "///A/1188/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2284, "atom1_serNum": 22374, "atom2_serNum": 22702, "donAcc_type": "standard", "distance": 3.843, "atom1_id": "///A/1066/OP1", "atom2_id": "///A/1080/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2285, "atom1_serNum": 22391, "atom2_serNum": 23830, "donAcc_type": "acceptable", "distance": 3.451, "atom1_id": "///A/1066/N1", "atom2_id": "///A/1187/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2286, "atom1_serNum": 22405, "atom2_serNum": 22446, "donAcc_type": "acceptable", "distance": 2.541, "atom1_id": "///A/1067/O2'", "atom2_id": "///A/1069/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2287, "atom1_serNum": 22405, "atom2_serNum": 23433, "donAcc_type": "acceptable", "distance": 2.961, "atom1_id": "///A/1067/O2'", "atom2_id": "///A/1169/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2288, "atom1_serNum": 22412, "atom2_serNum": 23834, "donAcc_type": "standard", "distance": 2.340, "atom1_id": "///A/1067/N6", "atom2_id": "///A/1187/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2289, "atom1_serNum": 22427, "atom2_serNum": 22477, "donAcc_type": "acceptable", "distance": 2.648, "atom1_id": "///A/1068/O2'", "atom2_id": "///A/1070/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2290, "atom1_serNum": 22434, "atom2_serNum": 65710, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/1068/O6", "atom2_id": "///G/69/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2291, "atom1_serNum": 22437, "atom2_serNum": 22457, "donAcc_type": "standard", "distance": 3.683, "atom1_id": "///A/1068/N2", "atom2_id": "///A/1069/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2292, "atom1_serNum": 22442, "atom2_serNum": 22474, "donAcc_type": "questionable", "distance": 3.307, "atom1_id": "///A/1069/OP2", "atom2_id": "///A/1070/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2293, "atom1_serNum": 22442, "atom2_serNum": 22493, "donAcc_type": "acceptable", "distance": 3.450, "atom1_id": "///A/1069/OP2", "atom2_id": "///A/1071/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2294, "atom1_serNum": 22450, "atom2_serNum": 23434, "donAcc_type": "acceptable", "distance": 3.330, "atom1_id": "///A/1069/O2'", "atom2_id": "///A/1169/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2295, "atom1_serNum": 22462, "atom2_serNum": 22507, "donAcc_type": "questionable", "distance": 2.714, "atom1_id": "///A/1070/OP2", "atom2_id": "///A/1072/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2296, "atom1_serNum": 22470, "atom2_serNum": 23894, "donAcc_type": "acceptable", "distance": 2.970, "atom1_id": "///A/1070/O2'", "atom2_id": "///A/1190/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2297, "atom1_serNum": 22477, "atom2_serNum": 23817, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///A/1070/O6", "atom2_id": "///A/1186/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2298, "atom1_serNum": 22478, "atom2_serNum": 23815, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///A/1070/N1", "atom2_id": "///A/1186/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2299, "atom1_serNum": 22480, "atom2_serNum": 23814, "donAcc_type": "standard", "distance": 2.828, "atom1_id": "///A/1070/N2", "atom2_id": "///A/1186/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2300, "atom1_serNum": 22480, "atom2_serNum": 23890, "donAcc_type": "standard", "distance": 3.741, "atom1_id": "///A/1070/N2", "atom2_id": "///A/1190/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2301, "atom1_serNum": 22493, "atom2_serNum": 22507, "donAcc_type": "acceptable", "distance": 2.989, "atom1_id": "///A/1071/O2'", "atom2_id": "///A/1072/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2302, "atom1_serNum": 22500, "atom2_serNum": 23795, "donAcc_type": "standard", "distance": 3.405, "atom1_id": "///A/1071/O6", "atom2_id": "///A/1185/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2303, "atom1_serNum": 22501, "atom2_serNum": 23794, "donAcc_type": "standard", "distance": 3.025, "atom1_id": "///A/1071/N1", "atom2_id": "///A/1185/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2304, "atom1_serNum": 22508, "atom2_serNum": 23678, "donAcc_type": "acceptable", "distance": 2.227, "atom1_id": "///A/1072/OP2", "atom2_id": "///A/1180/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2305, "atom1_serNum": 22516, "atom2_serNum": 22531, "donAcc_type": "acceptable", "distance": 2.410, "atom1_id": "///A/1072/O2'", "atom2_id": "///A/1073/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2306, "atom1_serNum": 22516, "atom2_serNum": 22548, "donAcc_type": "acceptable", "distance": 2.627, "atom1_id": "///A/1072/O2'", "atom2_id": "///A/1073/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2307, "atom1_serNum": 22538, "atom2_serNum": 22564, "donAcc_type": "acceptable", "distance": 2.982, "atom1_id": "///A/1073/O2'", "atom2_id": "///A/1074/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2308, "atom1_serNum": 22560, "atom2_serNum": 22578, "donAcc_type": "acceptable", "distance": 2.397, "atom1_id": "///A/1074/O2'", "atom2_id": "///A/1075/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2309, "atom1_serNum": 22567, "atom2_serNum": 23496, "donAcc_type": "standard", "distance": 2.149, "atom1_id": "///A/1074/N6", "atom2_id": "///A/1172/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2310, "atom1_serNum": 22574, "atom2_serNum": 23492, "donAcc_type": "standard", "distance": 3.384, "atom1_id": "///A/1075/OP2", "atom2_id": "///A/1171/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2311, "atom1_serNum": 22582, "atom2_serNum": 22595, "donAcc_type": "acceptable", "distance": 2.689, "atom1_id": "///A/1075/O2'", "atom2_id": "///A/1076/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2312, "atom1_serNum": 22586, "atom2_serNum": 23492, "donAcc_type": "standard", "distance": 2.737, "atom1_id": "///A/1075/N7", "atom2_id": "///A/1171/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2313, "atom1_serNum": 22589, "atom2_serNum": 23482, "donAcc_type": "acceptable", "distance": 2.955, "atom1_id": "///A/1075/N6", "atom2_id": "///A/1171/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2314, "atom1_serNum": 22589, "atom2_serNum": 23493, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///A/1075/N6", "atom2_id": "///A/1171/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2315, "atom1_serNum": 22611, "atom2_serNum": 23469, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/1076/O6", "atom2_id": "///A/1170/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2316, "atom1_serNum": 22612, "atom2_serNum": 23467, "donAcc_type": "standard", "distance": 2.833, "atom1_id": "///A/1076/N1", "atom2_id": "///A/1170/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2317, "atom1_serNum": 22614, "atom2_serNum": 23466, "donAcc_type": "standard", "distance": 2.664, "atom1_id": "///A/1076/N2", "atom2_id": "///A/1170/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2318, "atom1_serNum": 22634, "atom2_serNum": 23449, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///A/1077/O6", "atom2_id": "///A/1169/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2319, "atom1_serNum": 22635, "atom2_serNum": 23447, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///A/1077/N1", "atom2_id": "///A/1169/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2320, "atom1_serNum": 22637, "atom2_serNum": 23446, "donAcc_type": "standard", "distance": 2.686, "atom1_id": "///A/1077/N2", "atom2_id": "///A/1169/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2321, "atom1_serNum": 22658, "atom2_serNum": 23426, "donAcc_type": "questionable", "distance": 2.839, "atom1_id": "///A/1078/N1", "atom2_id": "///A/1168/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2322, "atom1_serNum": 22672, "atom2_serNum": 22684, "donAcc_type": "acceptable", "distance": 2.919, "atom1_id": "///A/1079/O2'", "atom2_id": "///A/1080/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2323, "atom1_serNum": 22672, "atom2_serNum": 22685, "donAcc_type": "acceptable", "distance": 2.776, "atom1_id": "///A/1079/O2'", "atom2_id": "///A/1080/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2324, "atom1_serNum": 22679, "atom2_serNum": 54386, "donAcc_type": "standard", "distance": 3.235, "atom1_id": "///A/1079/O4", "atom2_id": "///A/2779/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2325, "atom1_serNum": 22692, "atom2_serNum": 22706, "donAcc_type": "acceptable", "distance": 2.201, "atom1_id": "///A/1080/O2'", "atom2_id": "///A/1081/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2326, "atom1_serNum": 22699, "atom2_serNum": 23406, "donAcc_type": "standard", "distance": 2.734, "atom1_id": "///A/1080/O6", "atom2_id": "///A/1167/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2327, "atom1_serNum": 22700, "atom2_serNum": 23404, "donAcc_type": "standard", "distance": 2.861, "atom1_id": "///A/1080/N1", "atom2_id": "///A/1167/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2328, "atom1_serNum": 22702, "atom2_serNum": 23403, "donAcc_type": "standard", "distance": 2.827, "atom1_id": "///A/1080/N2", "atom2_id": "///A/1167/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2329, "atom1_serNum": 22706, "atom2_serNum": 65030, "donAcc_type": "standard", "distance": 3.161, "atom1_id": "///A/1081/OP1", "atom2_id": "///F/60/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2330, "atom1_serNum": 22707, "atom2_serNum": 65030, "donAcc_type": "standard", "distance": 2.499, "atom1_id": "///A/1081/OP2", "atom2_id": "///F/60/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2331, "atom1_serNum": 22719, "atom2_serNum": 23386, "donAcc_type": "standard", "distance": 2.320, "atom1_id": "///A/1081/O2", "atom2_id": "///A/1166/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2332, "atom1_serNum": 22720, "atom2_serNum": 23384, "donAcc_type": "questionable", "distance": 2.561, "atom1_id": "///A/1081/N3", "atom2_id": "///A/1166/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2333, "atom1_serNum": 22722, "atom2_serNum": 23383, "donAcc_type": "questionable", "distance": 2.545, "atom1_id": "///A/1081/O4", "atom2_id": "///A/1166/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2334, "atom1_serNum": 22742, "atom2_serNum": 23361, "donAcc_type": "standard", "distance": 2.800, "atom1_id": "///A/1082/O6", "atom2_id": "///A/1165/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2335, "atom1_serNum": 22743, "atom2_serNum": 23360, "donAcc_type": "standard", "distance": 3.320, "atom1_id": "///A/1082/N1", "atom2_id": "///A/1165/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2336, "atom1_serNum": 22765, "atom2_serNum": 23343, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///A/1083/O6", "atom2_id": "///A/1164/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2337, "atom1_serNum": 22765, "atom2_serNum": 23361, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///A/1083/O6", "atom2_id": "///A/1165/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2338, "atom1_serNum": 22766, "atom2_serNum": 23341, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///A/1083/N1", "atom2_id": "///A/1164/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2339, "atom1_serNum": 22766, "atom2_serNum": 23360, "donAcc_type": "standard", "distance": 2.515, "atom1_id": "///A/1083/N1", "atom2_id": "///A/1165/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2340, "atom1_serNum": 22768, "atom2_serNum": 23340, "donAcc_type": "standard", "distance": 2.719, "atom1_id": "///A/1083/N2", "atom2_id": "///A/1164/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2341, "atom1_serNum": 22791, "atom2_serNum": 22810, "donAcc_type": "questionable", "distance": 2.743, "atom1_id": "///A/1084/N3", "atom2_id": "///A/1085/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2342, "atom1_serNum": 22791, "atom2_serNum": 23343, "donAcc_type": "standard", "distance": 3.393, "atom1_id": "///A/1084/N3", "atom2_id": "///A/1164/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2343, "atom1_serNum": 22810, "atom2_serNum": 23343, "donAcc_type": "standard", "distance": 2.293, "atom1_id": "///A/1085/O6", "atom2_id": "///A/1164/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2344, "atom1_serNum": 22813, "atom2_serNum": 23316, "donAcc_type": "acceptable", "distance": 3.239, "atom1_id": "///A/1085/N2", "atom2_id": "///A/1163/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2345, "atom1_serNum": 22831, "atom2_serNum": 23301, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/1086/N3", "atom2_id": "///A/1162/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2346, "atom1_serNum": 22833, "atom2_serNum": 23303, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///A/1086/O4", "atom2_id": "///A/1162/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2347, "atom1_serNum": 22846, "atom2_serNum": 23259, "donAcc_type": "acceptable", "distance": 2.775, "atom1_id": "///A/1087/O2'", "atom2_id": "///A/1160/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2348, "atom1_serNum": 22846, "atom2_serNum": 23261, "donAcc_type": "acceptable", "distance": 2.448, "atom1_id": "///A/1087/O2'", "atom2_id": "///A/1160/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2349, "atom1_serNum": 22850, "atom2_serNum": 23281, "donAcc_type": "standard", "distance": 3.422, "atom1_id": "///A/1087/O2", "atom2_id": "///A/1161/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2350, "atom1_serNum": 22850, "atom2_serNum": 23282, "donAcc_type": "questionable", "distance": 2.554, "atom1_id": "///A/1087/O2", "atom2_id": "///A/1161/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2351, "atom1_serNum": 22873, "atom2_serNum": 23236, "donAcc_type": "standard", "distance": 2.642, "atom1_id": "///A/1088/O6", "atom2_id": "///A/1159/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2352, "atom1_serNum": 22873, "atom2_serNum": 23238, "donAcc_type": "questionable", "distance": 2.356, "atom1_id": "///A/1088/O6", "atom2_id": "///A/1159/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2353, "atom1_serNum": 22876, "atom2_serNum": 23235, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///A/1088/N2", "atom2_id": "///A/1159/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2354, "atom1_serNum": 22881, "atom2_serNum": 22916, "donAcc_type": "questionable", "distance": 3.311, "atom1_id": "///A/1089/OP2", "atom2_id": "///A/1090/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2355, "atom1_serNum": 22893, "atom2_serNum": 23218, "donAcc_type": "standard", "distance": 2.752, "atom1_id": "///A/1089/O2", "atom2_id": "///A/1158/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2356, "atom1_serNum": 22893, "atom2_serNum": 23235, "donAcc_type": "questionable", "distance": 2.902, "atom1_id": "///A/1089/O2", "atom2_id": "///A/1159/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2357, "atom1_serNum": 22894, "atom2_serNum": 23216, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///A/1089/N3", "atom2_id": "///A/1158/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2358, "atom1_serNum": 22894, "atom2_serNum": 23236, "donAcc_type": "standard", "distance": 3.368, "atom1_id": "///A/1089/N3", "atom2_id": "///A/1159/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2359, "atom1_serNum": 22896, "atom2_serNum": 23215, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///A/1089/N4", "atom2_id": "///A/1158/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2360, "atom1_serNum": 22909, "atom2_serNum": 22922, "donAcc_type": "acceptable", "distance": 2.512, "atom1_id": "///A/1090/O2'", "atom2_id": "///A/1091/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2361, "atom1_serNum": 22909, "atom2_serNum": 23193, "donAcc_type": "acceptable", "distance": 2.623, "atom1_id": "///A/1090/O2'", "atom2_id": "///A/1157/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2362, "atom1_serNum": 22909, "atom2_serNum": 23194, "donAcc_type": "acceptable", "distance": 2.280, "atom1_id": "///A/1090/O2'", "atom2_id": "///A/1157/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2363, "atom1_serNum": 22913, "atom2_serNum": 23216, "donAcc_type": "standard", "distance": 3.027, "atom1_id": "///A/1090/O2", "atom2_id": "///A/1158/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2364, "atom1_serNum": 22920, "atom2_serNum": 22967, "donAcc_type": "questionable", "distance": 2.910, "atom1_id": "///A/1091/OP1", "atom2_id": "///A/1093/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2365, "atom1_serNum": 22949, "atom2_serNum": 22964, "donAcc_type": "acceptable", "distance": 2.714, "atom1_id": "///A/1092/O2'", "atom2_id": "///A/1093/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2366, "atom1_serNum": 22963, "atom2_serNum": 23171, "donAcc_type": "standard", "distance": 2.590, "atom1_id": "///A/1093/OP2", "atom2_id": "///A/1156/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2367, "atom1_serNum": 22971, "atom2_serNum": 22998, "donAcc_type": "acceptable", "distance": 2.910, "atom1_id": "///A/1093/O2'", "atom2_id": "///A/1094/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2368, "atom1_serNum": 22971, "atom2_serNum": 23193, "donAcc_type": "acceptable", "distance": 2.139, "atom1_id": "///A/1093/O2'", "atom2_id": "///A/1157/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2369, "atom1_serNum": 22979, "atom2_serNum": 23178, "donAcc_type": "standard", "distance": 2.380, "atom1_id": "///A/1093/N1", "atom2_id": "///A/1157/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2370, "atom1_serNum": 22981, "atom2_serNum": 23178, "donAcc_type": "standard", "distance": 3.388, "atom1_id": "///A/1093/N2", "atom2_id": "///A/1157/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2371, "atom1_serNum": 22986, "atom2_serNum": 23065, "donAcc_type": "standard", "distance": 3.050, "atom1_id": "///A/1094/OP2", "atom2_id": "///A/1097/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2372, "atom1_serNum": 22986, "atom2_serNum": 23173, "donAcc_type": "standard", "distance": 2.321, "atom1_id": "///A/1094/OP2", "atom2_id": "///A/1156/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2373, "atom1_serNum": 22987, "atom2_serNum": 23065, "donAcc_type": "standard", "distance": 2.295, "atom1_id": "///A/1094/O5'", "atom2_id": "///A/1097/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2374, "atom1_serNum": 22998, "atom2_serNum": 23193, "donAcc_type": "standard", "distance": 2.667, "atom1_id": "///A/1094/N7", "atom2_id": "///A/1157/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2375, "atom1_serNum": 23001, "atom2_serNum": 23190, "donAcc_type": "standard", "distance": 2.638, "atom1_id": "///A/1094/N6", "atom2_id": "///A/1157/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2376, "atom1_serNum": 23001, "atom2_serNum": 23208, "donAcc_type": "acceptable", "distance": 3.237, "atom1_id": "///A/1094/N6", "atom2_id": "///A/1158/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2377, "atom1_serNum": 23001, "atom2_serNum": 23219, "donAcc_type": "standard", "distance": 2.968, "atom1_id": "///A/1094/N6", "atom2_id": "///A/1158/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2378, "atom1_serNum": 23008, "atom2_serNum": 23062, "donAcc_type": "questionable", "distance": 3.227, "atom1_id": "///A/1095/OP2", "atom2_id": "///A/1097/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2379, "atom1_serNum": 23020, "atom2_serNum": 23208, "donAcc_type": "acceptable", "distance": 3.240, "atom1_id": "///A/1095/O2", "atom2_id": "///A/1158/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2380, "atom1_serNum": 23020, "atom2_serNum": 54411, "donAcc_type": "standard", "distance": 2.622, "atom1_id": "///A/1095/O2", "atom2_id": "///A/2780/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2381, "atom1_serNum": 23021, "atom2_serNum": 54409, "donAcc_type": "standard", "distance": 3.155, "atom1_id": "///A/1095/N3", "atom2_id": "///A/2780/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2382, "atom1_serNum": 23023, "atom2_serNum": 54408, "donAcc_type": "standard", "distance": 3.912, "atom1_id": "///A/1095/N4", "atom2_id": "///A/2780/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2383, "atom1_serNum": 23036, "atom2_serNum": 54401, "donAcc_type": "acceptable", "distance": 3.177, "atom1_id": "///A/1096/O2'", "atom2_id": "///A/2780/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2384, "atom1_serNum": 23036, "atom2_serNum": 54417, "donAcc_type": "acceptable", "distance": 3.453, "atom1_id": "///A/1096/O2'", "atom2_id": "///A/2781/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2385, "atom1_serNum": 23046, "atom2_serNum": 54401, "donAcc_type": "acceptable", "distance": 2.470, "atom1_id": "///A/1096/N3", "atom2_id": "///A/2780/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2386, "atom1_serNum": 23058, "atom2_serNum": 23068, "donAcc_type": "acceptable", "distance": 2.877, "atom1_id": "///A/1097/O2'", "atom2_id": "///A/1097/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2387, "atom1_serNum": 23066, "atom2_serNum": 23173, "donAcc_type": "standard", "distance": 3.875, "atom1_id": "///A/1097/N1", "atom2_id": "///A/1156/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2388, "atom1_serNum": 23080, "atom2_serNum": 23110, "donAcc_type": "acceptable", "distance": 3.733, "atom1_id": "///A/1098/O2'", "atom2_id": "///A/1153/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2389, "atom1_serNum": 23084, "atom2_serNum": 23123, "donAcc_type": "acceptable", "distance": 2.443, "atom1_id": "///A/1098/O2", "atom2_id": "///A/1154/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2390, "atom1_serNum": 23085, "atom2_serNum": 23127, "donAcc_type": "questionable", "distance": 2.801, "atom1_id": "///A/1098/N3", "atom2_id": "///A/1154/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2391, "atom1_serNum": 23115, "atom2_serNum": 23150, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///A/1154/OP2", "atom2_id": "///A/1155/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2392, "atom1_serNum": 23128, "atom2_serNum": 23147, "donAcc_type": "standard", "distance": 3.286, "atom1_id": "///A/1154/N3", "atom2_id": "///A/1155/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2393, "atom1_serNum": 23143, "atom2_serNum": 23159, "donAcc_type": "acceptable", "distance": 2.306, "atom1_id": "///A/1155/O2'", "atom2_id": "///A/1156/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2394, "atom1_serNum": 23186, "atom2_serNum": 23200, "donAcc_type": "acceptable", "distance": 3.038, "atom1_id": "///A/1157/O2'", "atom2_id": "///A/1158/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2395, "atom1_serNum": 23186, "atom2_serNum": 23201, "donAcc_type": "acceptable", "distance": 2.402, "atom1_id": "///A/1157/O2'", "atom2_id": "///A/1158/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2396, "atom1_serNum": 23186, "atom2_serNum": 23204, "donAcc_type": "acceptable", "distance": 2.579, "atom1_id": "///A/1157/O2'", "atom2_id": "///A/1158/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2397, "atom1_serNum": 23231, "atom2_serNum": 23242, "donAcc_type": "acceptable", "distance": 2.928, "atom1_id": "///A/1159/O2'", "atom2_id": "///A/1160/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2398, "atom1_serNum": 23251, "atom2_serNum": 23267, "donAcc_type": "acceptable", "distance": 2.586, "atom1_id": "///A/1160/O2'", "atom2_id": "///A/1161/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2399, "atom1_serNum": 23274, "atom2_serNum": 23292, "donAcc_type": "acceptable", "distance": 2.201, "atom1_id": "///A/1161/O2'", "atom2_id": "///A/1162/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2400, "atom1_serNum": 23296, "atom2_serNum": 23312, "donAcc_type": "acceptable", "distance": 2.201, "atom1_id": "///A/1162/O2'", "atom2_id": "///A/1163/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2401, "atom1_serNum": 23376, "atom2_serNum": 23392, "donAcc_type": "acceptable", "distance": 2.718, "atom1_id": "///A/1166/O2'", "atom2_id": "///A/1167/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2402, "atom1_serNum": 23376, "atom2_serNum": 23395, "donAcc_type": "acceptable", "distance": 2.877, "atom1_id": "///A/1166/O2'", "atom2_id": "///A/1167/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2403, "atom1_serNum": 23474, "atom2_serNum": 23505, "donAcc_type": "acceptable", "distance": 2.750, "atom1_id": "///A/1171/OP2", "atom2_id": "///A/1172/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2404, "atom1_serNum": 23527, "atom2_serNum": 23541, "donAcc_type": "acceptable", "distance": 2.579, "atom1_id": "///A/1173/O2'", "atom2_id": "///A/1174/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2405, "atom1_serNum": 23559, "atom2_serNum": 49659, "donAcc_type": "acceptable", "distance": 2.647, "atom1_id": "///A/1174/N3", "atom2_id": "///A/2545/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2406, "atom1_serNum": 23571, "atom2_serNum": 49639, "donAcc_type": "acceptable", "distance": 2.515, "atom1_id": "///A/1175/O2'", "atom2_id": "///A/2544/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2407, "atom1_serNum": 23571, "atom2_serNum": 49643, "donAcc_type": "acceptable", "distance": 3.207, "atom1_id": "///A/1175/O2'", "atom2_id": "///A/2544/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2408, "atom1_serNum": 23571, "atom2_serNum": 49655, "donAcc_type": "acceptable", "distance": 2.359, "atom1_id": "///A/1175/O2'", "atom2_id": "///A/2545/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2409, "atom1_serNum": 23578, "atom2_serNum": 50789, "donAcc_type": "acceptable", "distance": 3.166, "atom1_id": "///A/1175/N6", "atom2_id": "///A/2598/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2410, "atom1_serNum": 23579, "atom2_serNum": 50789, "donAcc_type": "acceptable", "distance": 2.675, "atom1_id": "///A/1175/N1", "atom2_id": "///A/2598/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2411, "atom1_serNum": 23585, "atom2_serNum": 50822, "donAcc_type": "standard", "distance": 3.951, "atom1_id": "///A/1176/OP2", "atom2_id": "///A/2599/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2412, "atom1_serNum": 23593, "atom2_serNum": 40418, "donAcc_type": "acceptable", "distance": 3.664, "atom1_id": "///A/1176/O2'", "atom2_id": "///A/2055/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2413, "atom1_serNum": 23598, "atom2_serNum": 40398, "donAcc_type": "standard", "distance": 3.744, "atom1_id": "///A/1176/N3", "atom2_id": "///A/2054/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2414, "atom1_serNum": 23604, "atom2_serNum": 65829, "donAcc_type": "standard", "distance": 3.173, "atom1_id": "///A/1177/OP1", "atom2_id": "///G/83/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2415, "atom1_serNum": 23613, "atom2_serNum": 23660, "donAcc_type": "acceptable", "distance": 3.098, "atom1_id": "///A/1177/O2'", "atom2_id": "///A/1179/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2416, "atom1_serNum": 23620, "atom2_serNum": 40387, "donAcc_type": "acceptable", "distance": 2.681, "atom1_id": "///A/1177/O6", "atom2_id": "///A/2053/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2417, "atom1_serNum": 23623, "atom2_serNum": 23643, "donAcc_type": "standard", "distance": 3.946, "atom1_id": "///A/1177/N2", "atom2_id": "///A/1178/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2418, "atom1_serNum": 23636, "atom2_serNum": 23649, "donAcc_type": "acceptable", "distance": 3.184, "atom1_id": "///A/1178/O2'", "atom2_id": "///A/1179/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2419, "atom1_serNum": 23656, "atom2_serNum": 40425, "donAcc_type": "acceptable", "distance": 2.589, "atom1_id": "///A/1179/O2'", "atom2_id": "///A/2055/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2420, "atom1_serNum": 23656, "atom2_serNum": 40427, "donAcc_type": "acceptable", "distance": 3.086, "atom1_id": "///A/1179/O2'", "atom2_id": "///A/2055/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2421, "atom1_serNum": 23656, "atom2_serNum": 40438, "donAcc_type": "acceptable", "distance": 3.475, "atom1_id": "///A/1179/O2'", "atom2_id": "///A/2056/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2422, "atom1_serNum": 23664, "atom2_serNum": 40697, "donAcc_type": "standard", "distance": 3.629, "atom1_id": "///A/1179/N1", "atom2_id": "///A/2067/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2423, "atom1_serNum": 23705, "atom2_serNum": 23768, "donAcc_type": "standard", "distance": 2.628, "atom1_id": "///A/1181/N4", "atom2_id": "///A/1184/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2424, "atom1_serNum": 23718, "atom2_serNum": 40687, "donAcc_type": "acceptable", "distance": 3.127, "atom1_id": "///A/1182/O2'", "atom2_id": "///A/2067/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2425, "atom1_serNum": 23764, "atom2_serNum": 65997, "donAcc_type": "acceptable", "distance": 2.774, "atom1_id": "///A/1184/O2'", "atom2_id": "///G/105/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2426, "atom1_serNum": 23771, "atom2_serNum": 23797, "donAcc_type": "standard", "distance": 3.151, "atom1_id": "///A/1184/O6", "atom2_id": "///A/1185/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2427, "atom1_serNum": 23779, "atom2_serNum": 65742, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///A/1185/OP2", "atom2_id": "///G/73/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2428, "atom1_serNum": 23787, "atom2_serNum": 23880, "donAcc_type": "acceptable", "distance": 2.671, "atom1_id": "///A/1185/O2'", "atom2_id": "///A/1189/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2429, "atom1_serNum": 23797, "atom2_serNum": 23882, "donAcc_type": "standard", "distance": 3.930, "atom1_id": "///A/1185/N2", "atom2_id": "///A/1189/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2430, "atom1_serNum": 23801, "atom2_serNum": 65381, "donAcc_type": "standard", "distance": 2.825, "atom1_id": "///A/1186/OP1", "atom2_id": "///G/27/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2431, "atom1_serNum": 23802, "atom2_serNum": 65710, "donAcc_type": "standard", "distance": 2.494, "atom1_id": "///A/1186/OP2", "atom2_id": "///G/69/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2432, "atom1_serNum": 23803, "atom2_serNum": 65710, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///A/1186/O5'", "atom2_id": "///G/69/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2433, "atom1_serNum": 23810, "atom2_serNum": 23872, "donAcc_type": "acceptable", "distance": 2.534, "atom1_id": "///A/1186/O2'", "atom2_id": "///A/1189/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2434, "atom1_serNum": 23821, "atom2_serNum": 65395, "donAcc_type": "standard", "distance": 3.412, "atom1_id": "///A/1187/OP1", "atom2_id": "///G/28/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2435, "atom1_serNum": 23822, "atom2_serNum": 65687, "donAcc_type": "acceptable", "distance": 2.388, "atom1_id": "///A/1187/OP2", "atom2_id": "///G/66/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2436, "atom1_serNum": 23863, "atom2_serNum": 65394, "donAcc_type": "standard", "distance": 2.828, "atom1_id": "///A/1189/OP1", "atom2_id": "///G/28/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2437, "atom1_serNum": 24063, "atom2_serNum": 24079, "donAcc_type": "acceptable", "distance": 3.250, "atom1_id": "///A/1198/O2'", "atom2_id": "///A/1199/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2438, "atom1_serNum": 24074, "atom2_serNum": 70315, "donAcc_type": "standard", "distance": 3.440, "atom1_id": "///A/1199/OP1", "atom2_id": "///L/58/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2439, "atom1_serNum": 24074, "atom2_serNum": 70460, "donAcc_type": "acceptable", "distance": 3.457, "atom1_id": "///A/1199/OP1", "atom2_id": "///L/76/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2440, "atom1_serNum": 24094, "atom2_serNum": 70312, "donAcc_type": "standard", "distance": 2.624, "atom1_id": "///A/1200/OP1", "atom2_id": "///L/58/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2441, "atom1_serNum": 24095, "atom2_serNum": 70315, "donAcc_type": "standard", "distance": 2.731, "atom1_id": "///A/1200/OP2", "atom2_id": "///L/58/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2442, "atom1_serNum": 24193, "atom2_serNum": 74910, "donAcc_type": "acceptable", "distance": 3.183, "atom1_id": "///A/1204/O2'", "atom2_id": "///S/32/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2443, "atom1_serNum": 24204, "atom2_serNum": 74896, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///A/1205/OP1", "atom2_id": "///S/30/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2444, "atom1_serNum": 24269, "atom2_serNum": 70928, "donAcc_type": "questionable", "distance": 2.780, "atom1_id": "///A/1208/O5'", "atom2_id": "///M/23/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2445, "atom1_serNum": 24286, "atom2_serNum": 71433, "donAcc_type": "standard", "distance": 3.739, "atom1_id": "///A/1208/N2", "atom2_id": "///M/90/OE1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2446, "atom1_serNum": 24290, "atom2_serNum": 70938, "donAcc_type": "standard", "distance": 2.505, "atom1_id": "///A/1209/OP1", "atom2_id": "///M/24/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2447, "atom1_serNum": 24330, "atom2_serNum": 24664, "donAcc_type": "standard", "distance": 3.236, "atom1_id": "///A/1210/N1", "atom2_id": "///A/1226/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2448, "atom1_serNum": 24344, "atom2_serNum": 24360, "donAcc_type": "acceptable", "distance": 3.254, "atom1_id": "///A/1211/O2'", "atom2_id": "///A/1212/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2449, "atom1_serNum": 24348, "atom2_serNum": 24646, "donAcc_type": "standard", "distance": 2.725, "atom1_id": "///A/1211/O2", "atom2_id": "///A/1225/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2450, "atom1_serNum": 24349, "atom2_serNum": 24644, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/1211/N3", "atom2_id": "///A/1225/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2451, "atom1_serNum": 24351, "atom2_serNum": 24643, "donAcc_type": "standard", "distance": 2.977, "atom1_id": "///A/1211/N4", "atom2_id": "///A/1225/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2452, "atom1_serNum": 24369, "atom2_serNum": 24622, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///A/1212/N3", "atom2_id": "///A/1224/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2453, "atom1_serNum": 24371, "atom2_serNum": 24621, "donAcc_type": "standard", "distance": 3.046, "atom1_id": "///A/1212/O4", "atom2_id": "///A/1224/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2454, "atom1_serNum": 24391, "atom2_serNum": 24601, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///A/1213/O6", "atom2_id": "///A/1223/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2455, "atom1_serNum": 24392, "atom2_serNum": 24599, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/1213/N1", "atom2_id": "///A/1223/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2456, "atom1_serNum": 24394, "atom2_serNum": 24598, "donAcc_type": "standard", "distance": 2.716, "atom1_id": "///A/1213/N2", "atom2_id": "///A/1223/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2457, "atom1_serNum": 24407, "atom2_serNum": 24420, "donAcc_type": "acceptable", "distance": 2.881, "atom1_id": "///A/1214/O2'", "atom2_id": "///A/1215/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2458, "atom1_serNum": 24412, "atom2_serNum": 24580, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///A/1214/N3", "atom2_id": "///A/1222/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2459, "atom1_serNum": 24414, "atom2_serNum": 24579, "donAcc_type": "standard", "distance": 2.745, "atom1_id": "///A/1214/O4", "atom2_id": "///A/1222/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2460, "atom1_serNum": 24432, "atom2_serNum": 24558, "donAcc_type": "standard", "distance": 2.761, "atom1_id": "///A/1215/N3", "atom2_id": "///A/1221/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2461, "atom1_serNum": 24434, "atom2_serNum": 24557, "donAcc_type": "standard", "distance": 2.815, "atom1_id": "///A/1215/O4", "atom2_id": "///A/1221/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2462, "atom1_serNum": 24434, "atom2_serNum": 24579, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///A/1215/O4", "atom2_id": "///A/1222/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2463, "atom1_serNum": 24451, "atom2_serNum": 24494, "donAcc_type": "questionable", "distance": 2.730, "atom1_id": "///A/1216/O2", "atom2_id": "///A/1218/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2464, "atom1_serNum": 24451, "atom2_serNum": 24537, "donAcc_type": "standard", "distance": 2.474, "atom1_id": "///A/1216/O2", "atom2_id": "///A/1220/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2465, "atom1_serNum": 24452, "atom2_serNum": 24535, "donAcc_type": "standard", "distance": 2.794, "atom1_id": "///A/1216/N3", "atom2_id": "///A/1220/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2466, "atom1_serNum": 24452, "atom2_serNum": 24557, "donAcc_type": "standard", "distance": 3.196, "atom1_id": "///A/1216/N3", "atom2_id": "///A/1221/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2467, "atom1_serNum": 24454, "atom2_serNum": 24534, "donAcc_type": "standard", "distance": 3.033, "atom1_id": "///A/1216/N4", "atom2_id": "///A/1220/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2468, "atom1_serNum": 24467, "atom2_serNum": 24499, "donAcc_type": "acceptable", "distance": 2.997, "atom1_id": "///A/1217/O2'", "atom2_id": "///A/1219/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2469, "atom1_serNum": 24491, "atom2_serNum": 24527, "donAcc_type": "acceptable", "distance": 2.793, "atom1_id": "///A/1218/O2", "atom2_id": "///A/1220/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2470, "atom1_serNum": 24491, "atom2_serNum": 24546, "donAcc_type": "questionable", "distance": 3.069, "atom1_id": "///A/1218/O2", "atom2_id": "///A/1221/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2471, "atom1_serNum": 24527, "atom2_serNum": 24543, "donAcc_type": "acceptable", "distance": 2.869, "atom1_id": "///A/1220/O2'", "atom2_id": "///A/1221/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2472, "atom1_serNum": 24594, "atom2_serNum": 24610, "donAcc_type": "acceptable", "distance": 2.829, "atom1_id": "///A/1223/O2'", "atom2_id": "///A/1224/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2473, "atom1_serNum": 24636, "atom2_serNum": 24655, "donAcc_type": "acceptable", "distance": 3.218, "atom1_id": "///A/1225/O2'", "atom2_id": "///A/1226/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2474, "atom1_serNum": 24737, "atom2_serNum": 24771, "donAcc_type": "questionable", "distance": 3.091, "atom1_id": "///A/1230/OP2", "atom2_id": "///A/1231/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2475, "atom1_serNum": 24758, "atom2_serNum": 67414, "donAcc_type": "acceptable", "distance": 2.722, "atom1_id": "///A/1231/OP1", "atom2_id": "///I/30/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2476, "atom1_serNum": 24903, "atom2_serNum": 25549, "donAcc_type": "acceptable", "distance": 3.466, "atom1_id": "///A/1237/O2'", "atom2_id": "///A/1267/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2477, "atom1_serNum": 24907, "atom2_serNum": 26059, "donAcc_type": "standard", "distance": 3.234, "atom1_id": "///A/1237/O2", "atom2_id": "///A/1290/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2478, "atom1_serNum": 24908, "atom2_serNum": 26057, "donAcc_type": "standard", "distance": 3.266, "atom1_id": "///A/1237/N3", "atom2_id": "///A/1290/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2479, "atom1_serNum": 24910, "atom2_serNum": 26056, "donAcc_type": "standard", "distance": 3.509, "atom1_id": "///A/1237/N4", "atom2_id": "///A/1290/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2480, "atom1_serNum": 24931, "atom2_serNum": 26033, "donAcc_type": "standard", "distance": 3.026, "atom1_id": "///A/1238/N1", "atom2_id": "///A/1289/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2481, "atom1_serNum": 24933, "atom2_serNum": 26033, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///A/1238/N2", "atom2_id": "///A/1289/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2482, "atom1_serNum": 24951, "atom2_serNum": 25992, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///A/1239/N3", "atom2_id": "///A/1287/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2483, "atom1_serNum": 24953, "atom2_serNum": 25991, "donAcc_type": "standard", "distance": 3.017, "atom1_id": "///A/1239/O4", "atom2_id": "///A/1287/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2484, "atom1_serNum": 24966, "atom2_serNum": 69866, "donAcc_type": "acceptable", "distance": 3.657, "atom1_id": "///A/1240/O2'", "atom2_id": "///L/3/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2485, "atom1_serNum": 24971, "atom2_serNum": 25970, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///A/1240/N3", "atom2_id": "///A/1286/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2486, "atom1_serNum": 24973, "atom2_serNum": 25969, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///A/1240/O4", "atom2_id": "///A/1286/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2487, "atom1_serNum": 24990, "atom2_serNum": 25949, "donAcc_type": "standard", "distance": 2.680, "atom1_id": "///A/1241/O2", "atom2_id": "///A/1285/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2488, "atom1_serNum": 24991, "atom2_serNum": 25947, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/1241/N3", "atom2_id": "///A/1285/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2489, "atom1_serNum": 24993, "atom2_serNum": 25946, "donAcc_type": "standard", "distance": 2.981, "atom1_id": "///A/1241/N4", "atom2_id": "///A/1285/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2490, "atom1_serNum": 25006, "atom2_serNum": 63522, "donAcc_type": "acceptable", "distance": 3.301, "atom1_id": "///A/1242/O2'", "atom2_id": "///E/41/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2491, "atom1_serNum": 25011, "atom2_serNum": 25925, "donAcc_type": "standard", "distance": 2.859, "atom1_id": "///A/1242/N3", "atom2_id": "///A/1284/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2492, "atom1_serNum": 25013, "atom2_serNum": 25033, "donAcc_type": "standard", "distance": 3.156, "atom1_id": "///A/1242/O4", "atom2_id": "///A/1243/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2493, "atom1_serNum": 25013, "atom2_serNum": 25924, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///A/1242/O4", "atom2_id": "///A/1284/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2494, "atom1_serNum": 25026, "atom2_serNum": 25044, "donAcc_type": "acceptable", "distance": 3.205, "atom1_id": "///A/1243/O2'", "atom2_id": "///A/1244/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2495, "atom1_serNum": 25033, "atom2_serNum": 25904, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///A/1243/N6", "atom2_id": "///A/1283/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2496, "atom1_serNum": 25034, "atom2_serNum": 25902, "donAcc_type": "standard", "distance": 2.813, "atom1_id": "///A/1243/N1", "atom2_id": "///A/1283/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2497, "atom1_serNum": 25055, "atom2_serNum": 25884, "donAcc_type": "standard", "distance": 2.704, "atom1_id": "///A/1244/N6", "atom2_id": "///A/1282/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2498, "atom1_serNum": 25066, "atom2_serNum": 67231, "donAcc_type": "standard", "distance": 3.123, "atom1_id": "///A/1245/O4'", "atom2_id": "///I/4/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2499, "atom1_serNum": 25070, "atom2_serNum": 25086, "donAcc_type": "acceptable", "distance": 2.353, "atom1_id": "///A/1245/O2'", "atom2_id": "///A/1246/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2500, "atom1_serNum": 25070, "atom2_serNum": 25104, "donAcc_type": "acceptable", "distance": 2.683, "atom1_id": "///A/1245/O2'", "atom2_id": "///A/1246/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2501, "atom1_serNum": 25077, "atom2_serNum": 25864, "donAcc_type": "standard", "distance": 2.156, "atom1_id": "///A/1245/O6", "atom2_id": "///A/1281/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2502, "atom1_serNum": 25093, "atom2_serNum": 25108, "donAcc_type": "acceptable", "distance": 2.580, "atom1_id": "///A/1246/O2'", "atom2_id": "///A/1247/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2503, "atom1_serNum": 25093, "atom2_serNum": 25109, "donAcc_type": "acceptable", "distance": 2.590, "atom1_id": "///A/1246/O2'", "atom2_id": "///A/1247/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2504, "atom1_serNum": 25097, "atom2_serNum": 25842, "donAcc_type": "standard", "distance": 3.189, "atom1_id": "///A/1246/N7", "atom2_id": "///A/1280/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2505, "atom1_serNum": 25097, "atom2_serNum": 25844, "donAcc_type": "standard", "distance": 2.755, "atom1_id": "///A/1246/N7", "atom2_id": "///A/1280/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2506, "atom1_serNum": 25100, "atom2_serNum": 25842, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///A/1246/O6", "atom2_id": "///A/1280/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2507, "atom1_serNum": 25116, "atom2_serNum": 25131, "donAcc_type": "acceptable", "distance": 2.985, "atom1_id": "///A/1247/O2'", "atom2_id": "///A/1248/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2508, "atom1_serNum": 25116, "atom2_serNum": 25132, "donAcc_type": "acceptable", "distance": 2.356, "atom1_id": "///A/1247/O2'", "atom2_id": "///A/1248/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2509, "atom1_serNum": 25123, "atom2_serNum": 25821, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///A/1247/O6", "atom2_id": "///A/1279/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2510, "atom1_serNum": 25124, "atom2_serNum": 25819, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///A/1247/N1", "atom2_id": "///A/1279/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2511, "atom1_serNum": 25126, "atom2_serNum": 25818, "donAcc_type": "standard", "distance": 2.810, "atom1_id": "///A/1247/N2", "atom2_id": "///A/1279/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2512, "atom1_serNum": 25143, "atom2_serNum": 25801, "donAcc_type": "standard", "distance": 2.816, "atom1_id": "///A/1248/O2", "atom2_id": "///A/1278/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2513, "atom1_serNum": 25144, "atom2_serNum": 25799, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///A/1248/N3", "atom2_id": "///A/1278/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2514, "atom1_serNum": 25146, "atom2_serNum": 25798, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///A/1248/N4", "atom2_id": "///A/1278/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2515, "atom1_serNum": 25159, "atom2_serNum": 25777, "donAcc_type": "acceptable", "distance": 2.481, "atom1_id": "///A/1249/O2'", "atom2_id": "///A/1277/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2516, "atom1_serNum": 25164, "atom2_serNum": 25798, "donAcc_type": "standard", "distance": 3.005, "atom1_id": "///A/1249/N3", "atom2_id": "///A/1278/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2517, "atom1_serNum": 25170, "atom2_serNum": 25202, "donAcc_type": "acceptable", "distance": 3.599, "atom1_id": "///A/1250/OP1", "atom2_id": "///A/1251/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2518, "atom1_serNum": 25186, "atom2_serNum": 25769, "donAcc_type": "acceptable", "distance": 3.130, "atom1_id": "///A/1250/O6", "atom2_id": "///A/1277/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2519, "atom1_serNum": 25189, "atom2_serNum": 25761, "donAcc_type": "standard", "distance": 3.283, "atom1_id": "///A/1250/N2", "atom2_id": "///A/1277/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2520, "atom1_serNum": 25202, "atom2_serNum": 25213, "donAcc_type": "acceptable", "distance": 3.071, "atom1_id": "///A/1251/O2'", "atom2_id": "///A/1252/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2521, "atom1_serNum": 25222, "atom2_serNum": 25237, "donAcc_type": "acceptable", "distance": 2.553, "atom1_id": "///A/1252/O2'", "atom2_id": "///A/1253/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2522, "atom1_serNum": 25222, "atom2_serNum": 25756, "donAcc_type": "acceptable", "distance": 2.607, "atom1_id": "///A/1252/O2'", "atom2_id": "///A/1276/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2523, "atom1_serNum": 25232, "atom2_serNum": 25746, "donAcc_type": "acceptable", "distance": 2.863, "atom1_id": "///A/1252/N2", "atom2_id": "///A/1276/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2524, "atom1_serNum": 25232, "atom2_serNum": 25773, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///A/1252/N2", "atom2_id": "///A/1277/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2525, "atom1_serNum": 25233, "atom2_serNum": 25776, "donAcc_type": "standard", "distance": 2.997, "atom1_id": "///A/1252/N3", "atom2_id": "///A/1277/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2526, "atom1_serNum": 25237, "atom2_serNum": 25756, "donAcc_type": "standard", "distance": 3.260, "atom1_id": "///A/1253/OP2", "atom2_id": "///A/1276/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2527, "atom1_serNum": 25245, "atom2_serNum": 25801, "donAcc_type": "acceptable", "distance": 3.243, "atom1_id": "///A/1253/O2'", "atom2_id": "///A/1278/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2528, "atom1_serNum": 25245, "atom2_serNum": 25802, "donAcc_type": "acceptable", "distance": 3.179, "atom1_id": "///A/1253/O2'", "atom2_id": "///A/1278/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2529, "atom1_serNum": 25245, "atom2_serNum": 25810, "donAcc_type": "acceptable", "distance": 3.563, "atom1_id": "///A/1253/O2'", "atom2_id": "///A/1279/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2530, "atom1_serNum": 25249, "atom2_serNum": 25756, "donAcc_type": "standard", "distance": 3.306, "atom1_id": "///A/1253/N7", "atom2_id": "///A/1276/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2531, "atom1_serNum": 25252, "atom2_serNum": 25742, "donAcc_type": "standard", "distance": 3.706, "atom1_id": "///A/1253/N6", "atom2_id": "///A/1276/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2532, "atom1_serNum": 25255, "atom2_serNum": 25791, "donAcc_type": "acceptable", "distance": 3.171, "atom1_id": "///A/1253/N3", "atom2_id": "///A/1278/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2533, "atom1_serNum": 25271, "atom2_serNum": 25733, "donAcc_type": "standard", "distance": 3.466, "atom1_id": "///A/1254/N7", "atom2_id": "///A/1275/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2534, "atom1_serNum": 25274, "atom2_serNum": 25734, "donAcc_type": "standard", "distance": 3.121, "atom1_id": "///A/1254/N6", "atom2_id": "///A/1275/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2535, "atom1_serNum": 25296, "atom2_serNum": 25708, "donAcc_type": "standard", "distance": 2.797, "atom1_id": "///A/1255/O6", "atom2_id": "///A/1274/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2536, "atom1_serNum": 25297, "atom2_serNum": 25707, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///A/1255/N1", "atom2_id": "///A/1274/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2537, "atom1_serNum": 25299, "atom2_serNum": 25707, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///A/1255/N2", "atom2_id": "///A/1274/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2538, "atom1_serNum": 25303, "atom2_serNum": 69903, "donAcc_type": "acceptable", "distance": 3.466, "atom1_id": "///A/1256/OP1", "atom2_id": "///L/8/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2539, "atom1_serNum": 25303, "atom2_serNum": 69926, "donAcc_type": "standard", "distance": 3.589, "atom1_id": "///A/1256/OP1", "atom2_id": "///L/11/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2540, "atom1_serNum": 25316, "atom2_serNum": 25690, "donAcc_type": "standard", "distance": 2.713, "atom1_id": "///A/1256/O2", "atom2_id": "///A/1273/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2541, "atom1_serNum": 25317, "atom2_serNum": 25688, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///A/1256/N3", "atom2_id": "///A/1273/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2542, "atom1_serNum": 25319, "atom2_serNum": 25687, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///A/1256/N4", "atom2_id": "///A/1273/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2543, "atom1_serNum": 25336, "atom2_serNum": 25667, "donAcc_type": "standard", "distance": 2.775, "atom1_id": "///A/1257/O2", "atom2_id": "///A/1272/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2544, "atom1_serNum": 25337, "atom2_serNum": 25665, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///A/1257/N3", "atom2_id": "///A/1272/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2545, "atom1_serNum": 25339, "atom2_serNum": 25664, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///A/1257/N4", "atom2_id": "///A/1272/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2546, "atom1_serNum": 25359, "atom2_serNum": 25644, "donAcc_type": "standard", "distance": 2.968, "atom1_id": "///A/1258/N6", "atom2_id": "///A/1271/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2547, "atom1_serNum": 25360, "atom2_serNum": 25642, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///A/1258/N1", "atom2_id": "///A/1271/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2548, "atom1_serNum": 25381, "atom2_serNum": 25624, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///A/1259/O6", "atom2_id": "///A/1270/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2549, "atom1_serNum": 25382, "atom2_serNum": 25622, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///A/1259/N1", "atom2_id": "///A/1270/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2550, "atom1_serNum": 25384, "atom2_serNum": 25621, "donAcc_type": "standard", "distance": 2.760, "atom1_id": "///A/1259/N2", "atom2_id": "///A/1270/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2551, "atom1_serNum": 25423, "atom2_serNum": 25582, "donAcc_type": "standard", "distance": 2.799, "atom1_id": "///A/1261/O2", "atom2_id": "///A/1268/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2552, "atom1_serNum": 25424, "atom2_serNum": 25580, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///A/1261/N3", "atom2_id": "///A/1268/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2553, "atom1_serNum": 25426, "atom2_serNum": 25579, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///A/1261/N4", "atom2_id": "///A/1268/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2554, "atom1_serNum": 25443, "atom2_serNum": 25559, "donAcc_type": "standard", "distance": 2.796, "atom1_id": "///A/1262/O2", "atom2_id": "///A/1267/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2555, "atom1_serNum": 25444, "atom2_serNum": 25557, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///A/1262/N3", "atom2_id": "///A/1267/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2556, "atom1_serNum": 25446, "atom2_serNum": 25556, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///A/1262/N4", "atom2_id": "///A/1267/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2557, "atom1_serNum": 25467, "atom2_serNum": 25519, "donAcc_type": "standard", "distance": 3.031, "atom1_id": "///A/1263/N1", "atom2_id": "///A/1266/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2558, "atom1_serNum": 25469, "atom2_serNum": 25519, "donAcc_type": "standard", "distance": 2.300, "atom1_id": "///A/1263/N2", "atom2_id": "///A/1266/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2559, "atom1_serNum": 25480, "atom2_serNum": 71401, "donAcc_type": "standard", "distance": 3.284, "atom1_id": "///A/1264/O3'", "atom2_id": "///M/87/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2560, "atom1_serNum": 25503, "atom2_serNum": 71391, "donAcc_type": "standard", "distance": 2.497, "atom1_id": "///A/1265/O3'", "atom2_id": "///M/85/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2561, "atom1_serNum": 25505, "atom2_serNum": 25523, "donAcc_type": "acceptable", "distance": 2.302, "atom1_id": "///A/1265/O2'", "atom2_id": "///A/1266/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2562, "atom1_serNum": 25518, "atom2_serNum": 71391, "donAcc_type": "standard", "distance": 2.716, "atom1_id": "///A/1266/OP1", "atom2_id": "///M/85/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2563, "atom1_serNum": 25723, "atom2_serNum": 25742, "donAcc_type": "acceptable", "distance": 3.162, "atom1_id": "///A/1275/O2'", "atom2_id": "///A/1276/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2564, "atom1_serNum": 25746, "atom2_serNum": 25761, "donAcc_type": "acceptable", "distance": 3.122, "atom1_id": "///A/1276/O2'", "atom2_id": "///A/1277/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2565, "atom1_serNum": 25814, "atom2_serNum": 25830, "donAcc_type": "acceptable", "distance": 2.689, "atom1_id": "///A/1279/O2'", "atom2_id": "///A/1280/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2566, "atom1_serNum": 25897, "atom2_serNum": 67244, "donAcc_type": "acceptable", "distance": 3.046, "atom1_id": "///A/1283/O2'", "atom2_id": "///I/6/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2567, "atom1_serNum": 25910, "atom2_serNum": 67244, "donAcc_type": "questionable", "distance": 3.249, "atom1_id": "///A/1284/O5'", "atom2_id": "///I/6/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2568, "atom1_serNum": 25939, "atom2_serNum": 63521, "donAcc_type": "acceptable", "distance": 3.836, "atom1_id": "///A/1285/O2'", "atom2_id": "///E/41/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2569, "atom1_serNum": 25962, "atom2_serNum": 25977, "donAcc_type": "acceptable", "distance": 2.745, "atom1_id": "///A/1286/O2'", "atom2_id": "///A/1287/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2570, "atom1_serNum": 25962, "atom2_serNum": 63552, "donAcc_type": "acceptable", "distance": 3.143, "atom1_id": "///A/1286/O2'", "atom2_id": "///E/45/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2571, "atom1_serNum": 25984, "atom2_serNum": 25994, "donAcc_type": "acceptable", "distance": 3.107, "atom1_id": "///A/1287/O2'", "atom2_id": "///A/1287/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2572, "atom1_serNum": 25997, "atom2_serNum": 69856, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///A/1288/OP1", "atom2_id": "///L/2/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2573, "atom1_serNum": 26006, "atom2_serNum": 69874, "donAcc_type": "acceptable", "distance": 3.696, "atom1_id": "///A/1288/O2'", "atom2_id": "///L/4/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2574, "atom1_serNum": 26029, "atom2_serNum": 26042, "donAcc_type": "acceptable", "distance": 3.095, "atom1_id": "///A/1289/O2'", "atom2_id": "///A/1290/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2575, "atom1_serNum": 26029, "atom2_serNum": 26045, "donAcc_type": "acceptable", "distance": 3.196, "atom1_id": "///A/1289/O2'", "atom2_id": "///A/1290/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2576, "atom1_serNum": 26041, "atom2_serNum": 67346, "donAcc_type": "standard", "distance": 3.526, "atom1_id": "///A/1290/OP2", "atom2_id": "///I/18/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2577, "atom1_serNum": 26041, "atom2_serNum": 67365, "donAcc_type": "standard", "distance": 2.973, "atom1_id": "///A/1290/OP2", "atom2_id": "///I/21/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2578, "atom1_serNum": 26063, "atom2_serNum": 69917, "donAcc_type": "acceptable", "distance": 2.911, "atom1_id": "///A/1291/OP1", "atom2_id": "///L/10/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2579, "atom1_serNum": 26085, "atom2_serNum": 69948, "donAcc_type": "standard", "distance": 3.286, "atom1_id": "///A/1292/OP1", "atom2_id": "///L/13/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2580, "atom1_serNum": 26085, "atom2_serNum": 69949, "donAcc_type": "standard", "distance": 2.994, "atom1_id": "///A/1292/OP1", "atom2_id": "///L/13/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2581, "atom1_serNum": 26086, "atom2_serNum": 69949, "donAcc_type": "standard", "distance": 3.137, "atom1_id": "///A/1292/OP2", "atom2_id": "///L/13/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2582, "atom1_serNum": 26102, "atom2_serNum": 70136, "donAcc_type": "standard", "distance": 3.139, "atom1_id": "///A/1292/N1", "atom2_id": "///L/37/OE1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2583, "atom1_serNum": 26153, "atom2_serNum": 41170, "donAcc_type": "standard", "distance": 3.623, "atom1_id": "///A/1295/OP2", "atom2_id": "///A/2089/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2584, "atom1_serNum": 26166, "atom2_serNum": 63741, "donAcc_type": "standard", "distance": 2.665, "atom1_id": "///A/1295/N3", "atom2_id": "///E/72/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2585, "atom1_serNum": 26191, "atom2_serNum": 63809, "donAcc_type": "standard", "distance": 3.038, "atom1_id": "///A/1296/N2", "atom2_id": "///E/82/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 2586, "atom1_serNum": 26204, "atom2_serNum": 63829, "donAcc_type": "acceptable", "distance": 3.864, "atom1_id": "///A/1297/O2'", "atom2_id": "///E/84/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2587, "atom1_serNum": 26244, "atom2_serNum": 26263, "donAcc_type": "acceptable", "distance": 3.250, "atom1_id": "///A/1299/O2'", "atom2_id": "///A/1300/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2588, "atom1_serNum": 26282, "atom2_serNum": 72136, "donAcc_type": "standard", "distance": 3.416, "atom1_id": "///A/1301/OP2", "atom2_id": "///N/83/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2589, "atom1_serNum": 26317, "atom2_serNum": 40245, "donAcc_type": "standard", "distance": 3.059, "atom1_id": "///A/1302/N6", "atom2_id": "///A/2046/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2590, "atom1_serNum": 26318, "atom2_serNum": 40243, "donAcc_type": "standard", "distance": 3.001, "atom1_id": "///A/1302/N1", "atom2_id": "///A/2046/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2591, "atom1_serNum": 26323, "atom2_serNum": 75212, "donAcc_type": "standard", "distance": 3.322, "atom1_id": "///A/1303/OP1", "atom2_id": "///T/13/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2592, "atom1_serNum": 26332, "atom2_serNum": 75165, "donAcc_type": "acceptable", "distance": 3.649, "atom1_id": "///A/1303/O2'", "atom2_id": "///T/8/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2593, "atom1_serNum": 26336, "atom2_serNum": 40223, "donAcc_type": "standard", "distance": 3.802, "atom1_id": "///A/1303/O2", "atom2_id": "///A/2045/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2594, "atom1_serNum": 26337, "atom2_serNum": 40225, "donAcc_type": "standard", "distance": 3.608, "atom1_id": "///A/1303/N3", "atom2_id": "///A/2045/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2595, "atom1_serNum": 26343, "atom2_serNum": 75242, "donAcc_type": "standard", "distance": 2.376, "atom1_id": "///A/1304/OP1", "atom2_id": "///T/16/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2596, "atom1_serNum": 26344, "atom2_serNum": 26375, "donAcc_type": "acceptable", "distance": 2.631, "atom1_id": "///A/1304/OP2", "atom2_id": "///A/1305/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2597, "atom1_serNum": 26352, "atom2_serNum": 26366, "donAcc_type": "acceptable", "distance": 2.747, "atom1_id": "///A/1304/O2'", "atom2_id": "///A/1305/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2598, "atom1_serNum": 26362, "atom2_serNum": 40200, "donAcc_type": "standard", "distance": 2.838, "atom1_id": "///A/1304/N2", "atom2_id": "///A/2044/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2599, "atom1_serNum": 26363, "atom2_serNum": 40203, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///A/1304/N3", "atom2_id": "///A/2044/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2600, "atom1_serNum": 26379, "atom2_serNum": 40181, "donAcc_type": "standard", "distance": 3.873, "atom1_id": "///A/1305/N7", "atom2_id": "///A/2043/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2601, "atom1_serNum": 26382, "atom2_serNum": 40178, "donAcc_type": "standard", "distance": 3.267, "atom1_id": "///A/1305/N6", "atom2_id": "///A/2043/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2602, "atom1_serNum": 26388, "atom2_serNum": 75239, "donAcc_type": "standard", "distance": 3.691, "atom1_id": "///A/1306/OP1", "atom2_id": "///T/16/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2603, "atom1_serNum": 26389, "atom2_serNum": 75242, "donAcc_type": "standard", "distance": 3.425, "atom1_id": "///A/1306/OP2", "atom2_id": "///T/16/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2604, "atom1_serNum": 26389, "atom2_serNum": 75250, "donAcc_type": "standard", "distance": 2.535, "atom1_id": "///A/1306/OP2", "atom2_id": "///T/17/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2605, "atom1_serNum": 26390, "atom2_serNum": 71632, "donAcc_type": "standard", "distance": 3.087, "atom1_id": "///A/1306/O5'", "atom2_id": "///N/15/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2606, "atom1_serNum": 26397, "atom2_serNum": 26412, "donAcc_type": "acceptable", "distance": 2.568, "atom1_id": "///A/1306/O2'", "atom2_id": "///A/1307/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2607, "atom1_serNum": 26397, "atom2_serNum": 40136, "donAcc_type": "acceptable", "distance": 2.549, "atom1_id": "///A/1306/O2'", "atom2_id": "///A/2041/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2608, "atom1_serNum": 26407, "atom2_serNum": 26427, "donAcc_type": "standard", "distance": 3.897, "atom1_id": "///A/1306/N2", "atom2_id": "///A/1307/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2609, "atom1_serNum": 26407, "atom2_serNum": 40144, "donAcc_type": "standard", "distance": 2.721, "atom1_id": "///A/1306/N2", "atom2_id": "///A/2042/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2610, "atom1_serNum": 26412, "atom2_serNum": 40137, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///A/1307/OP2", "atom2_id": "///A/2041/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2611, "atom1_serNum": 26424, "atom2_serNum": 40159, "donAcc_type": "standard", "distance": 2.828, "atom1_id": "///A/1307/O2", "atom2_id": "///A/2042/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2612, "atom1_serNum": 26425, "atom2_serNum": 40156, "donAcc_type": "standard", "distance": 3.085, "atom1_id": "///A/1307/N3", "atom2_id": "///A/2042/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2613, "atom1_serNum": 26431, "atom2_serNum": 39994, "donAcc_type": "questionable", "distance": 3.285, "atom1_id": "///A/1308/OP1", "atom2_id": "///A/2035/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2614, "atom1_serNum": 26444, "atom2_serNum": 40139, "donAcc_type": "standard", "distance": 2.856, "atom1_id": "///A/1308/N7", "atom2_id": "///A/2041/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2615, "atom1_serNum": 26447, "atom2_serNum": 40140, "donAcc_type": "standard", "distance": 3.059, "atom1_id": "///A/1308/N6", "atom2_id": "///A/2041/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2616, "atom1_serNum": 26454, "atom2_serNum": 39972, "donAcc_type": "questionable", "distance": 3.348, "atom1_id": "///A/1309/OP2", "atom2_id": "///A/2034/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2617, "atom1_serNum": 26469, "atom2_serNum": 40114, "donAcc_type": "standard", "distance": 2.980, "atom1_id": "///A/1309/O6", "atom2_id": "///A/2040/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2618, "atom1_serNum": 26470, "atom2_serNum": 40113, "donAcc_type": "standard", "distance": 3.008, "atom1_id": "///A/1309/N1", "atom2_id": "///A/2040/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2619, "atom1_serNum": 26472, "atom2_serNum": 27650, "donAcc_type": "standard", "distance": 3.116, "atom1_id": "///A/1309/N2", "atom2_id": "///A/1364/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2620, "atom1_serNum": 26485, "atom2_serNum": 27646, "donAcc_type": "acceptable", "distance": 3.303, "atom1_id": "///A/1310/O2'", "atom2_id": "///A/1364/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2621, "atom1_serNum": 26485, "atom2_serNum": 34700, "donAcc_type": "acceptable", "distance": 3.230, "atom1_id": "///A/1310/O2'", "atom2_id": "///A/1693/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2622, "atom1_serNum": 26489, "atom2_serNum": 40096, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///A/1310/O2", "atom2_id": "///A/2039/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2623, "atom1_serNum": 26490, "atom2_serNum": 40094, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///A/1310/N3", "atom2_id": "///A/2039/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2624, "atom1_serNum": 26492, "atom2_serNum": 40093, "donAcc_type": "standard", "distance": 2.976, "atom1_id": "///A/1310/N4", "atom2_id": "///A/2039/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2625, "atom1_serNum": 26497, "atom2_serNum": 34699, "donAcc_type": "questionable", "distance": 2.811, "atom1_id": "///A/1311/OP2", "atom2_id": "///A/1693/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2626, "atom1_serNum": 26505, "atom2_serNum": 34043, "donAcc_type": "acceptable", "distance": 3.270, "atom1_id": "///A/1311/O2'", "atom2_id": "///A/1663/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2627, "atom1_serNum": 26513, "atom2_serNum": 33994, "donAcc_type": "standard", "distance": 2.998, "atom1_id": "///A/1311/N1", "atom2_id": "///A/1660/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2628, "atom1_serNum": 26515, "atom2_serNum": 33995, "donAcc_type": "standard", "distance": 3.099, "atom1_id": "///A/1311/N2", "atom2_id": "///A/1660/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2629, "atom1_serNum": 26520, "atom2_serNum": 34680, "donAcc_type": "questionable", "distance": 3.117, "atom1_id": "///A/1312/OP2", "atom2_id": "///A/1692/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2630, "atom1_serNum": 26550, "atom2_serNum": 26565, "donAcc_type": "acceptable", "distance": 3.102, "atom1_id": "///A/1313/O2'", "atom2_id": "///A/1314/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2631, "atom1_serNum": 26554, "atom2_serNum": 34666, "donAcc_type": "acceptable", "distance": 3.140, "atom1_id": "///A/1313/N7", "atom2_id": "///A/1691/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2632, "atom1_serNum": 26580, "atom2_serNum": 27003, "donAcc_type": "acceptable", "distance": 2.828, "atom1_id": "///A/1314/N1", "atom2_id": "///A/1334/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2633, "atom1_serNum": 26586, "atom2_serNum": 34641, "donAcc_type": "questionable", "distance": 2.850, "atom1_id": "///A/1315/OP2", "atom2_id": "///A/1690/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2634, "atom1_serNum": 26586, "atom2_serNum": 34643, "donAcc_type": "acceptable", "distance": 2.880, "atom1_id": "///A/1315/OP2", "atom2_id": "///A/1690/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2635, "atom1_serNum": 26601, "atom2_serNum": 26990, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///A/1315/O6", "atom2_id": "///A/1333/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2636, "atom1_serNum": 26602, "atom2_serNum": 26988, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///A/1315/N1", "atom2_id": "///A/1333/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2637, "atom1_serNum": 26604, "atom2_serNum": 26987, "donAcc_type": "standard", "distance": 2.783, "atom1_id": "///A/1315/N2", "atom2_id": "///A/1333/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2638, "atom1_serNum": 26608, "atom2_serNum": 68112, "donAcc_type": "standard", "distance": 3.770, "atom1_id": "///A/1316/OP1", "atom2_id": "///J/8/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2639, "atom1_serNum": 26608, "atom2_serNum": 68338, "donAcc_type": "standard", "distance": 3.894, "atom1_id": "///A/1316/OP1", "atom2_id": "///J/36/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2640, "atom1_serNum": 26617, "atom2_serNum": 68199, "donAcc_type": "acceptable", "distance": 2.846, "atom1_id": "///A/1316/O2'", "atom2_id": "///J/19/OD2", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2641, "atom1_serNum": 26624, "atom2_serNum": 26970, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///A/1316/N6", "atom2_id": "///A/1332/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2642, "atom1_serNum": 26625, "atom2_serNum": 26968, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///A/1316/N1", "atom2_id": "///A/1332/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2643, "atom1_serNum": 26635, "atom2_serNum": 68229, "donAcc_type": "questionable", "distance": 3.229, "atom1_id": "///A/1317/O4'", "atom2_id": "///J/23/OD2", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2644, "atom1_serNum": 26646, "atom2_serNum": 26950, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///A/1317/O6", "atom2_id": "///A/1331/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2645, "atom1_serNum": 26647, "atom2_serNum": 26948, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///A/1317/N1", "atom2_id": "///A/1331/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2646, "atom1_serNum": 26649, "atom2_serNum": 26947, "donAcc_type": "standard", "distance": 2.738, "atom1_id": "///A/1317/N2", "atom2_id": "///A/1331/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2647, "atom1_serNum": 26653, "atom2_serNum": 68290, "donAcc_type": "standard", "distance": 3.661, "atom1_id": "///A/1318/OP1", "atom2_id": "///J/31/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2648, "atom1_serNum": 26669, "atom2_serNum": 26930, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/1318/O6", "atom2_id": "///A/1330/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2649, "atom1_serNum": 26670, "atom2_serNum": 26928, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/1318/N1", "atom2_id": "///A/1330/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2650, "atom1_serNum": 26672, "atom2_serNum": 26927, "donAcc_type": "standard", "distance": 2.749, "atom1_id": "///A/1318/N2", "atom2_id": "///A/1330/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2651, "atom1_serNum": 26692, "atom2_serNum": 26910, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///A/1319/O6", "atom2_id": "///A/1329/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2652, "atom1_serNum": 26693, "atom2_serNum": 26908, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///A/1319/N1", "atom2_id": "///A/1329/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2653, "atom1_serNum": 26695, "atom2_serNum": 26907, "donAcc_type": "standard", "distance": 2.796, "atom1_id": "///A/1319/N2", "atom2_id": "///A/1329/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2654, "atom1_serNum": 26708, "atom2_serNum": 26727, "donAcc_type": "acceptable", "distance": 2.817, "atom1_id": "///A/1320/O2'", "atom2_id": "///A/1321/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2655, "atom1_serNum": 26715, "atom2_serNum": 26890, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///A/1320/O6", "atom2_id": "///A/1328/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2656, "atom1_serNum": 26716, "atom2_serNum": 26888, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///A/1320/N1", "atom2_id": "///A/1328/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2657, "atom1_serNum": 26718, "atom2_serNum": 26887, "donAcc_type": "standard", "distance": 2.766, "atom1_id": "///A/1320/N2", "atom2_id": "///A/1328/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2658, "atom1_serNum": 26735, "atom2_serNum": 26826, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///A/1321/O2", "atom2_id": "///A/1325/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2659, "atom1_serNum": 26736, "atom2_serNum": 26823, "donAcc_type": "standard", "distance": 3.204, "atom1_id": "///A/1321/N3", "atom2_id": "///A/1325/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2660, "atom1_serNum": 26751, "atom2_serNum": 26800, "donAcc_type": "acceptable", "distance": 2.586, "atom1_id": "///A/1322/O2'", "atom2_id": "///A/1324/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2661, "atom1_serNum": 26751, "atom2_serNum": 26803, "donAcc_type": "acceptable", "distance": 3.166, "atom1_id": "///A/1322/O2'", "atom2_id": "///A/1324/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2662, "atom1_serNum": 26759, "atom2_serNum": 26811, "donAcc_type": "standard", "distance": 3.182, "atom1_id": "///A/1322/N1", "atom2_id": "///A/1325/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2663, "atom1_serNum": 26761, "atom2_serNum": 26811, "donAcc_type": "standard", "distance": 2.354, "atom1_id": "///A/1322/N2", "atom2_id": "///A/1325/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2664, "atom1_serNum": 26761, "atom2_serNum": 26812, "donAcc_type": "standard", "distance": 3.081, "atom1_id": "///A/1322/N2", "atom2_id": "///A/1325/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2665, "atom1_serNum": 26761, "atom2_serNum": 27736, "donAcc_type": "standard", "distance": 2.642, "atom1_id": "///A/1322/N2", "atom2_id": "///A/1368/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2666, "atom1_serNum": 26803, "atom2_serNum": 27725, "donAcc_type": "questionable", "distance": 3.005, "atom1_id": "///A/1324/O6", "atom2_id": "///A/1368/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2667, "atom1_serNum": 26804, "atom2_serNum": 27720, "donAcc_type": "standard", "distance": 3.361, "atom1_id": "///A/1324/N1", "atom2_id": "///A/1368/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2668, "atom1_serNum": 26819, "atom2_serNum": 26855, "donAcc_type": "acceptable", "distance": 3.643, "atom1_id": "///A/1325/O2'", "atom2_id": "///A/1327/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2669, "atom1_serNum": 26827, "atom2_serNum": 27729, "donAcc_type": "acceptable", "distance": 3.251, "atom1_id": "///A/1325/N1", "atom2_id": "///A/1368/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2670, "atom1_serNum": 26832, "atom2_serNum": 68904, "donAcc_type": "standard", "distance": 3.396, "atom1_id": "///A/1326/OP1", "atom2_id": "///J/109/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2671, "atom1_serNum": 26837, "atom2_serNum": 68891, "donAcc_type": "standard", "distance": 2.653, "atom1_id": "///A/1326/O4'", "atom2_id": "///J/107/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2672, "atom1_serNum": 26841, "atom2_serNum": 26856, "donAcc_type": "acceptable", "distance": 2.295, "atom1_id": "///A/1326/O2'", "atom2_id": "///A/1327/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2673, "atom1_serNum": 26841, "atom2_serNum": 26859, "donAcc_type": "acceptable", "distance": 2.687, "atom1_id": "///A/1326/O2'", "atom2_id": "///A/1327/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2674, "atom1_serNum": 26848, "atom2_serNum": 34724, "donAcc_type": "standard", "distance": 2.857, "atom1_id": "///A/1326/N6", "atom2_id": "///A/1694/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2675, "atom1_serNum": 26855, "atom2_serNum": 26890, "donAcc_type": "standard", "distance": 3.321, "atom1_id": "///A/1327/OP2", "atom2_id": "///A/1328/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2676, "atom1_serNum": 26863, "atom2_serNum": 27691, "donAcc_type": "acceptable", "distance": 3.120, "atom1_id": "///A/1327/O2'", "atom2_id": "///A/1366/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2677, "atom1_serNum": 26870, "atom2_serNum": 27670, "donAcc_type": "questionable", "distance": 3.342, "atom1_id": "///A/1327/O4", "atom2_id": "///A/1365/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2678, "atom1_serNum": 27007, "atom2_serNum": 34653, "donAcc_type": "standard", "distance": 2.479, "atom1_id": "///A/1334/O2", "atom2_id": "///A/1690/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2679, "atom1_serNum": 27008, "atom2_serNum": 34651, "donAcc_type": "standard", "distance": 3.069, "atom1_id": "///A/1334/N3", "atom2_id": "///A/1690/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2680, "atom1_serNum": 27010, "atom2_serNum": 34650, "donAcc_type": "standard", "distance": 3.673, "atom1_id": "///A/1334/N4", "atom2_id": "///A/1690/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2681, "atom1_serNum": 27014, "atom2_serNum": 53493, "donAcc_type": "acceptable", "distance": 2.778, "atom1_id": "///A/1335/OP1", "atom2_id": "///A/2738/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2682, "atom1_serNum": 27030, "atom2_serNum": 34630, "donAcc_type": "standard", "distance": 3.001, "atom1_id": "///A/1335/N6", "atom2_id": "///A/1689/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2683, "atom1_serNum": 27031, "atom2_serNum": 34628, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///A/1335/N1", "atom2_id": "///A/1689/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2684, "atom1_serNum": 27045, "atom2_serNum": 27061, "donAcc_type": "acceptable", "distance": 3.213, "atom1_id": "///A/1336/O2'", "atom2_id": "///A/1337/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2685, "atom1_serNum": 27049, "atom2_serNum": 34610, "donAcc_type": "standard", "distance": 2.795, "atom1_id": "///A/1336/O2", "atom2_id": "///A/1688/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2686, "atom1_serNum": 27050, "atom2_serNum": 34608, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///A/1336/N3", "atom2_id": "///A/1688/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2687, "atom1_serNum": 27052, "atom2_serNum": 34607, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///A/1336/N4", "atom2_id": "///A/1688/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2688, "atom1_serNum": 27069, "atom2_serNum": 27152, "donAcc_type": "acceptable", "distance": 3.718, "atom1_id": "///A/1337/O2", "atom2_id": "///A/1341/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2689, "atom1_serNum": 27069, "atom2_serNum": 34587, "donAcc_type": "standard", "distance": 2.779, "atom1_id": "///A/1337/O2", "atom2_id": "///A/1687/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2690, "atom1_serNum": 27070, "atom2_serNum": 34585, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///A/1337/N3", "atom2_id": "///A/1687/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2691, "atom1_serNum": 27072, "atom2_serNum": 34584, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///A/1337/N4", "atom2_id": "///A/1687/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2692, "atom1_serNum": 27085, "atom2_serNum": 34540, "donAcc_type": "acceptable", "distance": 3.487, "atom1_id": "///A/1338/O2'", "atom2_id": "///A/1685/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2693, "atom1_serNum": 27085, "atom2_serNum": 34562, "donAcc_type": "acceptable", "distance": 3.347, "atom1_id": "///A/1338/O2'", "atom2_id": "///A/1686/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2694, "atom1_serNum": 27093, "atom2_serNum": 34525, "donAcc_type": "standard", "distance": 2.398, "atom1_id": "///A/1338/N1", "atom2_id": "///A/1685/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2695, "atom1_serNum": 27095, "atom2_serNum": 34559, "donAcc_type": "standard", "distance": 2.794, "atom1_id": "///A/1338/N2", "atom2_id": "///A/1686/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2696, "atom1_serNum": 27096, "atom2_serNum": 34562, "donAcc_type": "standard", "distance": 3.083, "atom1_id": "///A/1338/N3", "atom2_id": "///A/1686/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2697, "atom1_serNum": 27100, "atom2_serNum": 34258, "donAcc_type": "standard", "distance": 3.492, "atom1_id": "///A/1339/OP2", "atom2_id": "///A/1672/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2698, "atom1_serNum": 27104, "atom2_serNum": 34238, "donAcc_type": "standard", "distance": 3.049, "atom1_id": "///A/1339/O4'", "atom2_id": "///A/1671/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2699, "atom1_serNum": 27108, "atom2_serNum": 34407, "donAcc_type": "acceptable", "distance": 2.318, "atom1_id": "///A/1339/O2'", "atom2_id": "///A/1679/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2700, "atom1_serNum": 27108, "atom2_serNum": 34422, "donAcc_type": "acceptable", "distance": 2.813, "atom1_id": "///A/1339/O2'", "atom2_id": "///A/1680/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2701, "atom1_serNum": 27130, "atom2_serNum": 27144, "donAcc_type": "acceptable", "distance": 2.959, "atom1_id": "///A/1340/O2'", "atom2_id": "///A/1341/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2702, "atom1_serNum": 27137, "atom2_serNum": 34563, "donAcc_type": "standard", "distance": 3.550, "atom1_id": "///A/1340/N6", "atom2_id": "///A/1686/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2703, "atom1_serNum": 27138, "atom2_serNum": 34228, "donAcc_type": "acceptable", "distance": 3.664, "atom1_id": "///A/1340/N1", "atom2_id": "///A/1671/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2704, "atom1_serNum": 27144, "atom2_serNum": 33819, "donAcc_type": "acceptable", "distance": 3.679, "atom1_id": "///A/1341/OP2", "atom2_id": "///A/1652/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2705, "atom1_serNum": 27156, "atom2_serNum": 34610, "donAcc_type": "standard", "distance": 3.648, "atom1_id": "///A/1341/O2", "atom2_id": "///A/1688/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2706, "atom1_serNum": 27168, "atom2_serNum": 34587, "donAcc_type": "standard", "distance": 3.982, "atom1_id": "///A/1342/O4'", "atom2_id": "///A/1687/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2707, "atom1_serNum": 27172, "atom2_serNum": 34577, "donAcc_type": "acceptable", "distance": 3.320, "atom1_id": "///A/1342/O2'", "atom2_id": "///A/1687/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2708, "atom1_serNum": 27179, "atom2_serNum": 34215, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///A/1342/O6", "atom2_id": "///A/1670/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2709, "atom1_serNum": 27180, "atom2_serNum": 34213, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///A/1342/N1", "atom2_id": "///A/1670/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2710, "atom1_serNum": 27182, "atom2_serNum": 34212, "donAcc_type": "standard", "distance": 2.829, "atom1_id": "///A/1342/N2", "atom2_id": "///A/1670/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2711, "atom1_serNum": 27195, "atom2_serNum": 27207, "donAcc_type": "acceptable", "distance": 3.166, "atom1_id": "///A/1343/O2'", "atom2_id": "///A/1344/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2712, "atom1_serNum": 27195, "atom2_serNum": 27208, "donAcc_type": "acceptable", "distance": 2.386, "atom1_id": "///A/1343/O2'", "atom2_id": "///A/1344/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2713, "atom1_serNum": 27199, "atom2_serNum": 34195, "donAcc_type": "standard", "distance": 2.720, "atom1_id": "///A/1343/O2", "atom2_id": "///A/1669/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2714, "atom1_serNum": 27200, "atom2_serNum": 34193, "donAcc_type": "standard", "distance": 2.850, "atom1_id": "///A/1343/N3", "atom2_id": "///A/1669/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2715, "atom1_serNum": 27202, "atom2_serNum": 34192, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///A/1343/N4", "atom2_id": "///A/1669/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2716, "atom1_serNum": 27215, "atom2_serNum": 27227, "donAcc_type": "acceptable", "distance": 2.805, "atom1_id": "///A/1344/O2'", "atom2_id": "///A/1345/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2717, "atom1_serNum": 27215, "atom2_serNum": 27228, "donAcc_type": "acceptable", "distance": 2.716, "atom1_id": "///A/1344/O2'", "atom2_id": "///A/1345/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2718, "atom1_serNum": 27219, "atom2_serNum": 34172, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///A/1344/O2", "atom2_id": "///A/1668/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2719, "atom1_serNum": 27220, "atom2_serNum": 34170, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///A/1344/N3", "atom2_id": "///A/1668/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2720, "atom1_serNum": 27222, "atom2_serNum": 34169, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///A/1344/N4", "atom2_id": "///A/1668/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2721, "atom1_serNum": 27222, "atom2_serNum": 34192, "donAcc_type": "standard", "distance": 2.614, "atom1_id": "///A/1344/N4", "atom2_id": "///A/1669/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2722, "atom1_serNum": 27235, "atom2_serNum": 27247, "donAcc_type": "acceptable", "distance": 2.521, "atom1_id": "///A/1345/O2'", "atom2_id": "///A/1346/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2723, "atom1_serNum": 27240, "atom2_serNum": 34170, "donAcc_type": "questionable", "distance": 3.112, "atom1_id": "///A/1345/N3", "atom2_id": "///A/1668/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2724, "atom1_serNum": 27247, "atom2_serNum": 33803, "donAcc_type": "questionable", "distance": 2.911, "atom1_id": "///A/1346/OP2", "atom2_id": "///A/1651/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2725, "atom1_serNum": 27284, "atom2_serNum": 33796, "donAcc_type": "acceptable", "distance": 3.850, "atom1_id": "///A/1347/N6", "atom2_id": "///A/1651/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2726, "atom1_serNum": 27290, "atom2_serNum": 75591, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///A/1348/OP1", "atom2_id": "///U/9/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2727, "atom1_serNum": 27299, "atom2_serNum": 33903, "donAcc_type": "acceptable", "distance": 3.269, "atom1_id": "///A/1348/O2'", "atom2_id": "///A/1656/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2728, "atom1_serNum": 27306, "atom2_serNum": 33783, "donAcc_type": "standard", "distance": 2.954, "atom1_id": "///A/1348/O6", "atom2_id": "///A/1650/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2729, "atom1_serNum": 27307, "atom2_serNum": 33781, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///A/1348/N1", "atom2_id": "///A/1650/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2730, "atom1_serNum": 27309, "atom2_serNum": 33780, "donAcc_type": "standard", "distance": 2.828, "atom1_id": "///A/1348/N2", "atom2_id": "///A/1650/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2731, "atom1_serNum": 27314, "atom2_serNum": 75598, "donAcc_type": "standard", "distance": 3.340, "atom1_id": "///A/1349/OP2", "atom2_id": "///U/9/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2732, "atom1_serNum": 27322, "atom2_serNum": 33896, "donAcc_type": "acceptable", "distance": 3.243, "atom1_id": "///A/1349/O2'", "atom2_id": "///A/1656/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2733, "atom1_serNum": 27329, "atom2_serNum": 33763, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///A/1349/O6", "atom2_id": "///A/1649/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2734, "atom1_serNum": 27330, "atom2_serNum": 33761, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///A/1349/N1", "atom2_id": "///A/1649/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2735, "atom1_serNum": 27332, "atom2_serNum": 33760, "donAcc_type": "standard", "distance": 2.822, "atom1_id": "///A/1349/N2", "atom2_id": "///A/1649/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2736, "atom1_serNum": 27357, "atom2_serNum": 72851, "donAcc_type": "acceptable", "distance": 2.579, "atom1_id": "///A/1351/OP2", "atom2_id": "///O/63/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2737, "atom1_serNum": 27365, "atom2_serNum": 27412, "donAcc_type": "acceptable", "distance": 3.191, "atom1_id": "///A/1351/O2'", "atom2_id": "///A/1353/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2738, "atom1_serNum": 27369, "atom2_serNum": 27950, "donAcc_type": "standard", "distance": 3.433, "atom1_id": "///A/1351/O2", "atom2_id": "///A/1378/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2739, "atom1_serNum": 27370, "atom2_serNum": 27970, "donAcc_type": "standard", "distance": 3.822, "atom1_id": "///A/1351/N3", "atom2_id": "///A/1379/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2740, "atom1_serNum": 27385, "atom2_serNum": 27785, "donAcc_type": "acceptable", "distance": 3.454, "atom1_id": "///A/1352/O2'", "atom2_id": "///A/1371/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2741, "atom1_serNum": 27390, "atom2_serNum": 33742, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///A/1352/N3", "atom2_id": "///A/1648/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2742, "atom1_serNum": 27392, "atom2_serNum": 33741, "donAcc_type": "standard", "distance": 2.997, "atom1_id": "///A/1352/O4", "atom2_id": "///A/1648/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2743, "atom1_serNum": 27409, "atom2_serNum": 27927, "donAcc_type": "standard", "distance": 2.767, "atom1_id": "///A/1353/O2", "atom2_id": "///A/1377/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2744, "atom1_serNum": 27410, "atom2_serNum": 27925, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///A/1353/N3", "atom2_id": "///A/1377/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2745, "atom1_serNum": 27412, "atom2_serNum": 27924, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///A/1353/N4", "atom2_id": "///A/1377/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2746, "atom1_serNum": 27425, "atom2_serNum": 29098, "donAcc_type": "acceptable", "distance": 2.773, "atom1_id": "///A/1354/O2'", "atom2_id": "///A/1431/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2747, "atom1_serNum": 27425, "atom2_serNum": 29099, "donAcc_type": "acceptable", "distance": 2.509, "atom1_id": "///A/1354/O2'", "atom2_id": "///A/1431/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2748, "atom1_serNum": 27429, "atom2_serNum": 27904, "donAcc_type": "standard", "distance": 2.831, "atom1_id": "///A/1354/O2", "atom2_id": "///A/1376/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2749, "atom1_serNum": 27429, "atom2_serNum": 29098, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///A/1354/O2", "atom2_id": "///A/1431/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2750, "atom1_serNum": 27430, "atom2_serNum": 27902, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///A/1354/N3", "atom2_id": "///A/1376/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2751, "atom1_serNum": 27432, "atom2_serNum": 27901, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///A/1354/N4", "atom2_id": "///A/1376/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2752, "atom1_serNum": 27450, "atom2_serNum": 27880, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///A/1355/N3", "atom2_id": "///A/1375/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2753, "atom1_serNum": 27452, "atom2_serNum": 27879, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///A/1355/O4", "atom2_id": "///A/1375/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2754, "atom1_serNum": 27465, "atom2_serNum": 27481, "donAcc_type": "acceptable", "distance": 2.868, "atom1_id": "///A/1356/O2'", "atom2_id": "///A/1357/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2755, "atom1_serNum": 27472, "atom2_serNum": 27859, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///A/1356/O6", "atom2_id": "///A/1374/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2756, "atom1_serNum": 27473, "atom2_serNum": 27857, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///A/1356/N1", "atom2_id": "///A/1374/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2757, "atom1_serNum": 27475, "atom2_serNum": 27856, "donAcc_type": "standard", "distance": 2.783, "atom1_id": "///A/1356/N2", "atom2_id": "///A/1374/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2758, "atom1_serNum": 27495, "atom2_serNum": 27839, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///A/1357/N6", "atom2_id": "///A/1373/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2759, "atom1_serNum": 27496, "atom2_serNum": 27837, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///A/1357/N1", "atom2_id": "///A/1373/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2760, "atom1_serNum": 27510, "atom2_serNum": 27529, "donAcc_type": "acceptable", "distance": 2.386, "atom1_id": "///A/1358/O2'", "atom2_id": "///A/1359/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2761, "atom1_serNum": 27517, "atom2_serNum": 27819, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///A/1358/O6", "atom2_id": "///A/1372/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2762, "atom1_serNum": 27518, "atom2_serNum": 27817, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///A/1358/N1", "atom2_id": "///A/1372/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2763, "atom1_serNum": 27520, "atom2_serNum": 27816, "donAcc_type": "standard", "distance": 2.795, "atom1_id": "///A/1358/N2", "atom2_id": "///A/1372/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2764, "atom1_serNum": 27533, "atom2_serNum": 27721, "donAcc_type": "acceptable", "distance": 3.605, "atom1_id": "///A/1359/O2'", "atom2_id": "///A/1368/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2765, "atom1_serNum": 27540, "atom2_serNum": 27741, "donAcc_type": "questionable", "distance": 2.717, "atom1_id": "///A/1359/O6", "atom2_id": "///A/1369/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2766, "atom1_serNum": 27543, "atom2_serNum": 27776, "donAcc_type": "questionable", "distance": 3.046, "atom1_id": "///A/1359/N2", "atom2_id": "///A/1370/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2767, "atom1_serNum": 27543, "atom2_serNum": 27817, "donAcc_type": "standard", "distance": 3.283, "atom1_id": "///A/1359/N2", "atom2_id": "///A/1372/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2768, "atom1_serNum": 27563, "atom2_serNum": 27828, "donAcc_type": "standard", "distance": 3.765, "atom1_id": "///A/1360/N6", "atom2_id": "///A/1373/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2769, "atom1_serNum": 27585, "atom2_serNum": 27816, "donAcc_type": "standard", "distance": 3.301, "atom1_id": "///A/1361/N6", "atom2_id": "///A/1372/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2770, "atom1_serNum": 27586, "atom2_serNum": 27812, "donAcc_type": "acceptable", "distance": 3.159, "atom1_id": "///A/1361/N1", "atom2_id": "///A/1372/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2771, "atom1_serNum": 27591, "atom2_serNum": 72260, "donAcc_type": "standard", "distance": 2.485, "atom1_id": "///A/1362/OP1", "atom2_id": "///N/98/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2772, "atom1_serNum": 27592, "atom2_serNum": 72260, "donAcc_type": "standard", "distance": 3.319, "atom1_id": "///A/1362/OP2", "atom2_id": "///N/98/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2773, "atom1_serNum": 27600, "atom2_serNum": 27614, "donAcc_type": "acceptable", "distance": 2.169, "atom1_id": "///A/1362/O2'", "atom2_id": "///A/1363/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2774, "atom1_serNum": 27607, "atom2_serNum": 27776, "donAcc_type": "standard", "distance": 3.336, "atom1_id": "///A/1362/O6", "atom2_id": "///A/1370/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2775, "atom1_serNum": 27608, "atom2_serNum": 27776, "donAcc_type": "questionable", "distance": 3.322, "atom1_id": "///A/1362/N1", "atom2_id": "///A/1370/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2776, "atom1_serNum": 27610, "atom2_serNum": 27774, "donAcc_type": "standard", "distance": 3.353, "atom1_id": "///A/1362/N2", "atom2_id": "///A/1370/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2777, "atom1_serNum": 27630, "atom2_serNum": 27756, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///A/1363/O6", "atom2_id": "///A/1369/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2778, "atom1_serNum": 27631, "atom2_serNum": 27754, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///A/1363/N1", "atom2_id": "///A/1369/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2779, "atom1_serNum": 27633, "atom2_serNum": 27753, "donAcc_type": "standard", "distance": 2.749, "atom1_id": "///A/1363/N2", "atom2_id": "///A/1369/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2780, "atom1_serNum": 27637, "atom2_serNum": 34010, "donAcc_type": "acceptable", "distance": 3.530, "atom1_id": "///A/1364/OP1", "atom2_id": "///A/1661/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2781, "atom1_serNum": 27662, "atom2_serNum": 40096, "donAcc_type": "standard", "distance": 3.532, "atom1_id": "///A/1365/O4'", "atom2_id": "///A/2039/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2782, "atom1_serNum": 27666, "atom2_serNum": 40086, "donAcc_type": "acceptable", "distance": 2.792, "atom1_id": "///A/1365/O2'", "atom2_id": "///A/2039/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2783, "atom1_serNum": 27684, "atom2_serNum": 68903, "donAcc_type": "standard", "distance": 2.738, "atom1_id": "///A/1366/O3'", "atom2_id": "///J/108/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2784, "atom1_serNum": 27686, "atom2_serNum": 68902, "donAcc_type": "acceptable", "distance": 2.732, "atom1_id": "///A/1366/O2'", "atom2_id": "///J/108/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2785, "atom1_serNum": 27686, "atom2_serNum": 68903, "donAcc_type": "acceptable", "distance": 2.854, "atom1_id": "///A/1366/O2'", "atom2_id": "///J/108/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2786, "atom1_serNum": 27693, "atom2_serNum": 34692, "donAcc_type": "standard", "distance": 3.689, "atom1_id": "///A/1366/N4", "atom2_id": "///A/1692/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2787, "atom1_serNum": 27721, "atom2_serNum": 27756, "donAcc_type": "standard", "distance": 3.031, "atom1_id": "///A/1368/OP2", "atom2_id": "///A/1369/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2788, "atom1_serNum": 27749, "atom2_serNum": 27765, "donAcc_type": "acceptable", "distance": 2.923, "atom1_id": "///A/1369/O2'", "atom2_id": "///A/1370/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2789, "atom1_serNum": 27769, "atom2_serNum": 27799, "donAcc_type": "acceptable", "distance": 3.018, "atom1_id": "///A/1370/O2'", "atom2_id": "///A/1371/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2790, "atom1_serNum": 27773, "atom2_serNum": 34017, "donAcc_type": "standard", "distance": 3.962, "atom1_id": "///A/1370/O2", "atom2_id": "///A/1661/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2791, "atom1_serNum": 27781, "atom2_serNum": 27819, "donAcc_type": "standard", "distance": 3.679, "atom1_id": "///A/1371/OP2", "atom2_id": "///A/1372/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2792, "atom1_serNum": 27793, "atom2_serNum": 33861, "donAcc_type": "acceptable", "distance": 2.518, "atom1_id": "///A/1371/N7", "atom2_id": "///A/1654/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2793, "atom1_serNum": 27843, "atom2_serNum": 72871, "donAcc_type": "standard", "distance": 2.547, "atom1_id": "///A/1374/OP1", "atom2_id": "///O/65/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2794, "atom1_serNum": 27917, "atom2_serNum": 29119, "donAcc_type": "acceptable", "distance": 2.915, "atom1_id": "///A/1377/O2'", "atom2_id": "///A/1432/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2795, "atom1_serNum": 27921, "atom2_serNum": 72845, "donAcc_type": "standard", "distance": 3.335, "atom1_id": "///A/1377/N7", "atom2_id": "///O/62/NZ", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 2796, "atom1_serNum": 27924, "atom2_serNum": 72845, "donAcc_type": "standard", "distance": 3.264, "atom1_id": "///A/1377/O6", "atom2_id": "///O/62/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2797, "atom1_serNum": 27927, "atom2_serNum": 29121, "donAcc_type": "standard", "distance": 3.777, "atom1_id": "///A/1377/N2", "atom2_id": "///A/1432/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2798, "atom1_serNum": 27931, "atom2_serNum": 72462, "donAcc_type": "acceptable", "distance": 3.583, "atom1_id": "///A/1378/OP1", "atom2_id": "///O/14/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2799, "atom1_serNum": 27947, "atom2_serNum": 72845, "donAcc_type": "standard", "distance": 3.236, "atom1_id": "///A/1378/O6", "atom2_id": "///O/62/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2800, "atom1_serNum": 27955, "atom2_serNum": 72823, "donAcc_type": "acceptable", "distance": 2.202, "atom1_id": "///A/1379/OP2", "atom2_id": "///O/59/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2801, "atom1_serNum": 27955, "atom2_serNum": 72979, "donAcc_type": "standard", "distance": 3.570, "atom1_id": "///A/1379/OP2", "atom2_id": "///O/78/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2802, "atom1_serNum": 27961, "atom2_serNum": 33714, "donAcc_type": "acceptable", "distance": 3.188, "atom1_id": "///A/1379/O3'", "atom2_id": "///A/1647/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2803, "atom1_serNum": 27974, "atom2_serNum": 29200, "donAcc_type": "standard", "distance": 2.371, "atom1_id": "///A/1380/OP1", "atom2_id": "///A/1436/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2804, "atom1_serNum": 27974, "atom2_serNum": 33714, "donAcc_type": "acceptable", "distance": 3.136, "atom1_id": "///A/1380/OP1", "atom2_id": "///A/1647/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2805, "atom1_serNum": 27975, "atom2_serNum": 29133, "donAcc_type": "acceptable", "distance": 3.427, "atom1_id": "///A/1380/OP2", "atom2_id": "///A/1433/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2806, "atom1_serNum": 27983, "atom2_serNum": 27987, "donAcc_type": "acceptable", "distance": 2.925, "atom1_id": "///A/1380/O2'", "atom2_id": "///A/1380/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2807, "atom1_serNum": 27987, "atom2_serNum": 72787, "donAcc_type": "standard", "distance": 2.654, "atom1_id": "///A/1380/O2", "atom2_id": "///O/55/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2808, "atom1_serNum": 28003, "atom2_serNum": 28039, "donAcc_type": "acceptable", "distance": 3.061, "atom1_id": "///A/1381/O2'", "atom2_id": "///A/1383/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2809, "atom1_serNum": 28003, "atom2_serNum": 28040, "donAcc_type": "acceptable", "distance": 2.607, "atom1_id": "///A/1381/O2'", "atom2_id": "///A/1383/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2810, "atom1_serNum": 28007, "atom2_serNum": 33719, "donAcc_type": "standard", "distance": 3.013, "atom1_id": "///A/1381/N7", "atom2_id": "///A/1647/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2811, "atom1_serNum": 28010, "atom2_serNum": 33718, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///A/1381/N6", "atom2_id": "///A/1647/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2812, "atom1_serNum": 28025, "atom2_serNum": 28924, "donAcc_type": "acceptable", "distance": 3.104, "atom1_id": "///A/1382/O2'", "atom2_id": "///A/1423/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2813, "atom1_serNum": 28032, "atom2_serNum": 29347, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///A/1382/O6", "atom2_id": "///A/1443/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2814, "atom1_serNum": 28033, "atom2_serNum": 29345, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///A/1382/N1", "atom2_id": "///A/1443/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2815, "atom1_serNum": 28035, "atom2_serNum": 29344, "donAcc_type": "standard", "distance": 2.789, "atom1_id": "///A/1382/N2", "atom2_id": "///A/1443/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2816, "atom1_serNum": 28053, "atom2_serNum": 29326, "donAcc_type": "standard", "distance": 3.711, "atom1_id": "///A/1383/N3", "atom2_id": "///A/1442/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2817, "atom1_serNum": 28055, "atom2_serNum": 29325, "donAcc_type": "standard", "distance": 3.713, "atom1_id": "///A/1383/O4", "atom2_id": "///A/1442/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2818, "atom1_serNum": 28072, "atom2_serNum": 33701, "donAcc_type": "standard", "distance": 2.827, "atom1_id": "///A/1384/O2", "atom2_id": "///A/1646/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2819, "atom1_serNum": 28073, "atom2_serNum": 33699, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///A/1384/N3", "atom2_id": "///A/1646/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2820, "atom1_serNum": 28075, "atom2_serNum": 33698, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///A/1384/N4", "atom2_id": "///A/1646/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2821, "atom1_serNum": 28095, "atom2_serNum": 33678, "donAcc_type": "standard", "distance": 2.938, "atom1_id": "///A/1385/O6", "atom2_id": "///A/1645/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2822, "atom1_serNum": 28096, "atom2_serNum": 33676, "donAcc_type": "standard", "distance": 2.846, "atom1_id": "///A/1385/N1", "atom2_id": "///A/1645/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2823, "atom1_serNum": 28098, "atom2_serNum": 33675, "donAcc_type": "standard", "distance": 2.668, "atom1_id": "///A/1385/N2", "atom2_id": "///A/1645/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2824, "atom1_serNum": 28118, "atom2_serNum": 33658, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///A/1386/O6", "atom2_id": "///A/1644/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2825, "atom1_serNum": 28119, "atom2_serNum": 33656, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///A/1386/N1", "atom2_id": "///A/1644/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2826, "atom1_serNum": 28121, "atom2_serNum": 33655, "donAcc_type": "standard", "distance": 2.779, "atom1_id": "///A/1386/N2", "atom2_id": "///A/1644/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2827, "atom1_serNum": 28126, "atom2_serNum": 28186, "donAcc_type": "standard", "distance": 3.556, "atom1_id": "///A/1387/OP2", "atom2_id": "///A/1389/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2828, "atom1_serNum": 28141, "atom2_serNum": 33638, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///A/1387/O6", "atom2_id": "///A/1643/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2829, "atom1_serNum": 28142, "atom2_serNum": 33636, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///A/1387/N1", "atom2_id": "///A/1643/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2830, "atom1_serNum": 28144, "atom2_serNum": 33635, "donAcc_type": "standard", "distance": 2.824, "atom1_id": "///A/1387/N2", "atom2_id": "///A/1643/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2831, "atom1_serNum": 28179, "atom2_serNum": 33131, "donAcc_type": "acceptable", "distance": 3.564, "atom1_id": "///A/1389/O2'", "atom2_id": "///A/1620/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2832, "atom1_serNum": 28183, "atom2_serNum": 28861, "donAcc_type": "standard", "distance": 2.720, "atom1_id": "///A/1389/O2", "atom2_id": "///A/1420/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2833, "atom1_serNum": 28184, "atom2_serNum": 28859, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///A/1389/N3", "atom2_id": "///A/1420/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2834, "atom1_serNum": 28186, "atom2_serNum": 28858, "donAcc_type": "standard", "distance": 2.991, "atom1_id": "///A/1389/N4", "atom2_id": "///A/1420/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2835, "atom1_serNum": 28195, "atom2_serNum": 33131, "donAcc_type": "acceptable", "distance": 3.373, "atom1_id": "///A/1390/O4'", "atom2_id": "///A/1620/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2836, "atom1_serNum": 28199, "atom2_serNum": 33109, "donAcc_type": "acceptable", "distance": 2.259, "atom1_id": "///A/1390/O2'", "atom2_id": "///A/1619/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2837, "atom1_serNum": 28199, "atom2_serNum": 33127, "donAcc_type": "acceptable", "distance": 3.083, "atom1_id": "///A/1390/O2'", "atom2_id": "///A/1620/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2838, "atom1_serNum": 28203, "atom2_serNum": 28838, "donAcc_type": "standard", "distance": 3.319, "atom1_id": "///A/1390/O2", "atom2_id": "///A/1419/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2839, "atom1_serNum": 28204, "atom2_serNum": 28836, "donAcc_type": "standard", "distance": 2.967, "atom1_id": "///A/1390/N3", "atom2_id": "///A/1419/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2840, "atom1_serNum": 28206, "atom2_serNum": 28835, "donAcc_type": "standard", "distance": 2.558, "atom1_id": "///A/1390/N4", "atom2_id": "///A/1419/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2841, "atom1_serNum": 28219, "atom2_serNum": 33097, "donAcc_type": "acceptable", "distance": 3.091, "atom1_id": "///A/1391/O2'", "atom2_id": "///A/1618/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2842, "atom1_serNum": 28223, "atom2_serNum": 28793, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///A/1391/O2", "atom2_id": "///A/1417/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2843, "atom1_serNum": 28224, "atom2_serNum": 28790, "donAcc_type": "standard", "distance": 2.985, "atom1_id": "///A/1391/N3", "atom2_id": "///A/1417/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2844, "atom1_serNum": 28231, "atom2_serNum": 28771, "donAcc_type": "standard", "distance": 2.345, "atom1_id": "///A/1392/OP2", "atom2_id": "///A/1416/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2845, "atom1_serNum": 28246, "atom2_serNum": 28815, "donAcc_type": "standard", "distance": 3.173, "atom1_id": "///A/1392/N6", "atom2_id": "///A/1418/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2846, "atom1_serNum": 28265, "atom2_serNum": 28773, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///A/1393/N7", "atom2_id": "///A/1416/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2847, "atom1_serNum": 28268, "atom2_serNum": 28774, "donAcc_type": "standard", "distance": 2.972, "atom1_id": "///A/1393/N6", "atom2_id": "///A/1416/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2848, "atom1_serNum": 28290, "atom2_serNum": 28750, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///A/1394/O6", "atom2_id": "///A/1415/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2849, "atom1_serNum": 28291, "atom2_serNum": 28748, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///A/1394/N1", "atom2_id": "///A/1415/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2850, "atom1_serNum": 28293, "atom2_serNum": 28747, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///A/1394/N2", "atom2_id": "///A/1415/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2851, "atom1_serNum": 28310, "atom2_serNum": 28730, "donAcc_type": "standard", "distance": 2.771, "atom1_id": "///A/1395/O2", "atom2_id": "///A/1414/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2852, "atom1_serNum": 28311, "atom2_serNum": 28728, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///A/1395/N3", "atom2_id": "///A/1414/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2853, "atom1_serNum": 28313, "atom2_serNum": 28727, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///A/1395/N4", "atom2_id": "///A/1414/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2854, "atom1_serNum": 28330, "atom2_serNum": 28707, "donAcc_type": "standard", "distance": 2.825, "atom1_id": "///A/1396/O2", "atom2_id": "///A/1413/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2855, "atom1_serNum": 28331, "atom2_serNum": 28705, "donAcc_type": "standard", "distance": 2.938, "atom1_id": "///A/1396/N3", "atom2_id": "///A/1413/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2856, "atom1_serNum": 28333, "atom2_serNum": 28704, "donAcc_type": "standard", "distance": 2.971, "atom1_id": "///A/1396/N4", "atom2_id": "///A/1413/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2857, "atom1_serNum": 28346, "atom2_serNum": 28362, "donAcc_type": "acceptable", "distance": 2.975, "atom1_id": "///A/1397/O2'", "atom2_id": "///A/1398/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2858, "atom1_serNum": 28354, "atom2_serNum": 28647, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///A/1397/N1", "atom2_id": "///A/1411/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2859, "atom1_serNum": 28356, "atom2_serNum": 28679, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///A/1397/N2", "atom2_id": "///A/1412/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2860, "atom1_serNum": 28357, "atom2_serNum": 28682, "donAcc_type": "standard", "distance": 3.112, "atom1_id": "///A/1397/N3", "atom2_id": "///A/1412/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2861, "atom1_serNum": 28361, "atom2_serNum": 28640, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///A/1398/OP2", "atom2_id": "///A/1410/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2862, "atom1_serNum": 28361, "atom2_serNum": 28642, "donAcc_type": "standard", "distance": 2.697, "atom1_id": "///A/1398/OP2", "atom2_id": "///A/1410/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2863, "atom1_serNum": 28373, "atom2_serNum": 28660, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///A/1398/N7", "atom2_id": "///A/1411/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2864, "atom1_serNum": 28376, "atom2_serNum": 28659, "donAcc_type": "standard", "distance": 2.789, "atom1_id": "///A/1398/N6", "atom2_id": "///A/1411/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2865, "atom1_serNum": 28376, "atom2_serNum": 44408, "donAcc_type": "standard", "distance": 3.429, "atom1_id": "///A/1398/N6", "atom2_id": "///A/2241/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2866, "atom1_serNum": 28399, "atom2_serNum": 44446, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/1399/N1", "atom2_id": "///A/2243/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2867, "atom1_serNum": 28401, "atom2_serNum": 44408, "donAcc_type": "standard", "distance": 3.230, "atom1_id": "///A/1399/N2", "atom2_id": "///A/2241/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2868, "atom1_serNum": 28401, "atom2_serNum": 44447, "donAcc_type": "standard", "distance": 3.227, "atom1_id": "///A/1399/N2", "atom2_id": "///A/2243/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2869, "atom1_serNum": 28414, "atom2_serNum": 44462, "donAcc_type": "acceptable", "distance": 3.248, "atom1_id": "///A/1400/O2'", "atom2_id": "///A/2244/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2870, "atom1_serNum": 28421, "atom2_serNum": 28619, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///A/1400/O6", "atom2_id": "///A/1409/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2871, "atom1_serNum": 28422, "atom2_serNum": 28617, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///A/1400/N1", "atom2_id": "///A/1409/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2872, "atom1_serNum": 28424, "atom2_serNum": 28616, "donAcc_type": "standard", "distance": 2.838, "atom1_id": "///A/1400/N2", "atom2_id": "///A/1409/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2873, "atom1_serNum": 28437, "atom2_serNum": 37845, "donAcc_type": "acceptable", "distance": 3.087, "atom1_id": "///A/1401/O2'", "atom2_id": "///A/1839/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2874, "atom1_serNum": 28441, "atom2_serNum": 28599, "donAcc_type": "standard", "distance": 2.774, "atom1_id": "///A/1401/O2", "atom2_id": "///A/1408/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2875, "atom1_serNum": 28442, "atom2_serNum": 28597, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/1401/N3", "atom2_id": "///A/1408/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2876, "atom1_serNum": 28444, "atom2_serNum": 28596, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///A/1401/N4", "atom2_id": "///A/1408/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2877, "atom1_serNum": 28457, "atom2_serNum": 37823, "donAcc_type": "acceptable", "distance": 2.996, "atom1_id": "///A/1402/O2'", "atom2_id": "///A/1838/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2878, "atom1_serNum": 28457, "atom2_serNum": 37833, "donAcc_type": "acceptable", "distance": 2.521, "atom1_id": "///A/1402/O2'", "atom2_id": "///A/1838/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2879, "atom1_serNum": 28461, "atom2_serNum": 28576, "donAcc_type": "standard", "distance": 2.764, "atom1_id": "///A/1402/O2", "atom2_id": "///A/1407/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2880, "atom1_serNum": 28462, "atom2_serNum": 28574, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/1402/N3", "atom2_id": "///A/1407/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2881, "atom1_serNum": 28464, "atom2_serNum": 28573, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///A/1402/N4", "atom2_id": "///A/1407/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2882, "atom1_serNum": 28487, "atom2_serNum": 28536, "donAcc_type": "standard", "distance": 2.842, "atom1_id": "///A/1403/N2", "atom2_id": "///A/1406/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2883, "atom1_serNum": 28487, "atom2_serNum": 28548, "donAcc_type": "standard", "distance": 3.555, "atom1_id": "///A/1403/N2", "atom2_id": "///A/1406/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2884, "atom1_serNum": 28589, "atom2_serNum": 37830, "donAcc_type": "acceptable", "distance": 3.462, "atom1_id": "///A/1408/O2'", "atom2_id": "///A/1838/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2885, "atom1_serNum": 28599, "atom2_serNum": 37855, "donAcc_type": "standard", "distance": 3.398, "atom1_id": "///A/1408/N2", "atom2_id": "///A/1839/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2886, "atom1_serNum": 28612, "atom2_serNum": 37867, "donAcc_type": "acceptable", "distance": 3.577, "atom1_id": "///A/1409/O2'", "atom2_id": "///A/1840/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2887, "atom1_serNum": 28655, "atom2_serNum": 44410, "donAcc_type": "acceptable", "distance": 2.917, "atom1_id": "///A/1411/O2'", "atom2_id": "///A/2241/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2888, "atom1_serNum": 28777, "atom2_serNum": 75609, "donAcc_type": "standard", "distance": 3.018, "atom1_id": "///A/1417/OP1", "atom2_id": "///U/10/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2889, "atom1_serNum": 28786, "atom2_serNum": 28800, "donAcc_type": "acceptable", "distance": 2.732, "atom1_id": "///A/1417/O2'", "atom2_id": "///A/1418/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2890, "atom1_serNum": 28786, "atom2_serNum": 28801, "donAcc_type": "acceptable", "distance": 2.876, "atom1_id": "///A/1417/O2'", "atom2_id": "///A/1418/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2891, "atom1_serNum": 28786, "atom2_serNum": 28820, "donAcc_type": "acceptable", "distance": 2.836, "atom1_id": "///A/1417/O2'", "atom2_id": "///A/1419/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2892, "atom1_serNum": 28786, "atom2_serNum": 28832, "donAcc_type": "acceptable", "distance": 2.694, "atom1_id": "///A/1417/O2'", "atom2_id": "///A/1419/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2893, "atom1_serNum": 28828, "atom2_serNum": 33072, "donAcc_type": "acceptable", "distance": 3.455, "atom1_id": "///A/1419/O2'", "atom2_id": "///A/1617/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2894, "atom1_serNum": 28838, "atom2_serNum": 33095, "donAcc_type": "standard", "distance": 3.016, "atom1_id": "///A/1419/N2", "atom2_id": "///A/1618/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2895, "atom1_serNum": 28851, "atom2_serNum": 33117, "donAcc_type": "acceptable", "distance": 3.491, "atom1_id": "///A/1420/O2'", "atom2_id": "///A/1619/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2896, "atom1_serNum": 28916, "atom2_serNum": 29340, "donAcc_type": "acceptable", "distance": 3.015, "atom1_id": "///A/1423/O2'", "atom2_id": "///A/1443/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2897, "atom1_serNum": 28916, "atom2_serNum": 29344, "donAcc_type": "acceptable", "distance": 3.244, "atom1_id": "///A/1423/O2'", "atom2_id": "///A/1443/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2898, "atom1_serNum": 28938, "atom2_serNum": 29179, "donAcc_type": "acceptable", "distance": 2.632, "atom1_id": "///A/1424/O2'", "atom2_id": "///A/1435/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2899, "atom1_serNum": 28945, "atom2_serNum": 29305, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/1424/N6", "atom2_id": "///A/1441/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2900, "atom1_serNum": 28946, "atom2_serNum": 29303, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///A/1424/N1", "atom2_id": "///A/1441/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2901, "atom1_serNum": 28952, "atom2_serNum": 29180, "donAcc_type": "standard", "distance": 3.227, "atom1_id": "///A/1425/OP2", "atom2_id": "///A/1435/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2902, "atom1_serNum": 28960, "atom2_serNum": 30884, "donAcc_type": "acceptable", "distance": 2.878, "atom1_id": "///A/1425/O2'", "atom2_id": "///A/1515/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2903, "atom1_serNum": 28964, "atom2_serNum": 29285, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///A/1425/O2", "atom2_id": "///A/1440/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2904, "atom1_serNum": 28965, "atom2_serNum": 29283, "donAcc_type": "standard", "distance": 2.966, "atom1_id": "///A/1425/N3", "atom2_id": "///A/1440/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2905, "atom1_serNum": 28967, "atom2_serNum": 29282, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///A/1425/N4", "atom2_id": "///A/1440/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2906, "atom1_serNum": 28987, "atom2_serNum": 29262, "donAcc_type": "standard", "distance": 2.984, "atom1_id": "///A/1426/N6", "atom2_id": "///A/1439/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2907, "atom1_serNum": 28988, "atom2_serNum": 29260, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///A/1426/N1", "atom2_id": "///A/1439/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2908, "atom1_serNum": 29002, "atom2_serNum": 32102, "donAcc_type": "acceptable", "distance": 3.109, "atom1_id": "///A/1427/O2'", "atom2_id": "///A/1572/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2909, "atom1_serNum": 29002, "atom2_serNum": 32118, "donAcc_type": "acceptable", "distance": 2.813, "atom1_id": "///A/1427/O2'", "atom2_id": "///A/1573/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2910, "atom1_serNum": 29009, "atom2_serNum": 29242, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///A/1427/O6", "atom2_id": "///A/1438/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2911, "atom1_serNum": 29010, "atom2_serNum": 29240, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///A/1427/N1", "atom2_id": "///A/1438/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2912, "atom1_serNum": 29012, "atom2_serNum": 29239, "donAcc_type": "standard", "distance": 2.786, "atom1_id": "///A/1427/N2", "atom2_id": "///A/1438/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2913, "atom1_serNum": 29032, "atom2_serNum": 29222, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///A/1428/O6", "atom2_id": "///A/1437/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2914, "atom1_serNum": 29033, "atom2_serNum": 29220, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///A/1428/N1", "atom2_id": "///A/1437/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2915, "atom1_serNum": 29035, "atom2_serNum": 29219, "donAcc_type": "standard", "distance": 2.814, "atom1_id": "///A/1428/N2", "atom2_id": "///A/1437/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2916, "atom1_serNum": 29052, "atom2_serNum": 29160, "donAcc_type": "standard", "distance": 2.705, "atom1_id": "///A/1429/O2", "atom2_id": "///A/1434/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2917, "atom1_serNum": 29053, "atom2_serNum": 29157, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///A/1429/N3", "atom2_id": "///A/1434/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2918, "atom1_serNum": 29073, "atom2_serNum": 29125, "donAcc_type": "standard", "distance": 3.560, "atom1_id": "///A/1430/N3", "atom2_id": "///A/1433/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2919, "atom1_serNum": 29088, "atom2_serNum": 29104, "donAcc_type": "acceptable", "distance": 2.411, "atom1_id": "///A/1431/O2'", "atom2_id": "///A/1432/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2920, "atom1_serNum": 29088, "atom2_serNum": 29107, "donAcc_type": "acceptable", "distance": 3.136, "atom1_id": "///A/1431/O2'", "atom2_id": "///A/1432/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2921, "atom1_serNum": 29095, "atom2_serNum": 72472, "donAcc_type": "questionable", "distance": 3.020, "atom1_id": "///A/1431/O6", "atom2_id": "///O/15/OE2", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 2922, "atom1_serNum": 29144, "atom2_serNum": 33725, "donAcc_type": "questionable", "distance": 3.103, "atom1_id": "///A/1434/OP1", "atom2_id": "///A/1648/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2923, "atom1_serNum": 29144, "atom2_serNum": 33748, "donAcc_type": "questionable", "distance": 3.069, "atom1_id": "///A/1434/OP1", "atom2_id": "///A/1649/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2924, "atom1_serNum": 29153, "atom2_serNum": 29166, "donAcc_type": "acceptable", "distance": 2.641, "atom1_id": "///A/1434/O2'", "atom2_id": "///A/1435/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2925, "atom1_serNum": 29153, "atom2_serNum": 29168, "donAcc_type": "acceptable", "distance": 2.566, "atom1_id": "///A/1434/O2'", "atom2_id": "///A/1435/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2926, "atom1_serNum": 29153, "atom2_serNum": 29187, "donAcc_type": "acceptable", "distance": 2.942, "atom1_id": "///A/1434/O2'", "atom2_id": "///A/1436/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2927, "atom1_serNum": 29187, "atom2_serNum": 29222, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/1436/OP2", "atom2_id": "///A/1437/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2928, "atom1_serNum": 29195, "atom2_serNum": 29199, "donAcc_type": "acceptable", "distance": 3.033, "atom1_id": "///A/1436/O2'", "atom2_id": "///A/1436/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2929, "atom1_serNum": 29206, "atom2_serNum": 72787, "donAcc_type": "standard", "distance": 3.468, "atom1_id": "///A/1437/OP1", "atom2_id": "///O/55/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2930, "atom1_serNum": 29215, "atom2_serNum": 72552, "donAcc_type": "acceptable", "distance": 3.619, "atom1_id": "///A/1437/O2'", "atom2_id": "///O/25/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2931, "atom1_serNum": 29227, "atom2_serNum": 72772, "donAcc_type": "standard", "distance": 3.279, "atom1_id": "///A/1438/OP2", "atom2_id": "///O/53/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 2932, "atom1_serNum": 29235, "atom2_serNum": 29246, "donAcc_type": "acceptable", "distance": 2.281, "atom1_id": "///A/1438/O2'", "atom2_id": "///A/1439/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2933, "atom1_serNum": 29235, "atom2_serNum": 29248, "donAcc_type": "acceptable", "distance": 2.810, "atom1_id": "///A/1438/O2'", "atom2_id": "///A/1439/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2934, "atom1_serNum": 29255, "atom2_serNum": 29268, "donAcc_type": "acceptable", "distance": 2.595, "atom1_id": "///A/1439/O2'", "atom2_id": "///A/1440/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2935, "atom1_serNum": 29255, "atom2_serNum": 29271, "donAcc_type": "acceptable", "distance": 2.879, "atom1_id": "///A/1439/O2'", "atom2_id": "///A/1440/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2936, "atom1_serNum": 29298, "atom2_serNum": 32016, "donAcc_type": "acceptable", "distance": 2.952, "atom1_id": "///A/1441/O2'", "atom2_id": "///A/1568/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2937, "atom1_serNum": 29316, "atom2_serNum": 30926, "donAcc_type": "acceptable", "distance": 3.143, "atom1_id": "///A/1442/O3'", "atom2_id": "///A/1517/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2938, "atom1_serNum": 29318, "atom2_serNum": 30926, "donAcc_type": "acceptable", "distance": 2.725, "atom1_id": "///A/1442/O2'", "atom2_id": "///A/1517/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2939, "atom1_serNum": 29360, "atom2_serNum": 29376, "donAcc_type": "acceptable", "distance": 2.942, "atom1_id": "///A/1444/O2'", "atom2_id": "///A/1445/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2940, "atom1_serNum": 29364, "atom2_serNum": 33618, "donAcc_type": "standard", "distance": 2.778, "atom1_id": "///A/1444/O2", "atom2_id": "///A/1642/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2941, "atom1_serNum": 29365, "atom2_serNum": 33616, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///A/1444/N3", "atom2_id": "///A/1642/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2942, "atom1_serNum": 29367, "atom2_serNum": 33615, "donAcc_type": "standard", "distance": 2.970, "atom1_id": "///A/1444/N4", "atom2_id": "///A/1642/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2943, "atom1_serNum": 29387, "atom2_serNum": 33595, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///A/1445/N6", "atom2_id": "///A/1641/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2944, "atom1_serNum": 29388, "atom2_serNum": 33593, "donAcc_type": "standard", "distance": 2.820, "atom1_id": "///A/1445/N1", "atom2_id": "///A/1641/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2945, "atom1_serNum": 29406, "atom2_serNum": 33575, "donAcc_type": "standard", "distance": 2.707, "atom1_id": "///A/1446/O2", "atom2_id": "///A/1640/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2946, "atom1_serNum": 29407, "atom2_serNum": 33573, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///A/1446/N3", "atom2_id": "///A/1640/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2947, "atom1_serNum": 29409, "atom2_serNum": 33572, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///A/1446/N4", "atom2_id": "///A/1640/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2948, "atom1_serNum": 29422, "atom2_serNum": 29435, "donAcc_type": "acceptable", "distance": 2.945, "atom1_id": "///A/1447/O2'", "atom2_id": "///A/1448/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2949, "atom1_serNum": 29426, "atom2_serNum": 33552, "donAcc_type": "standard", "distance": 2.758, "atom1_id": "///A/1447/O2", "atom2_id": "///A/1639/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2950, "atom1_serNum": 29427, "atom2_serNum": 33550, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///A/1447/N3", "atom2_id": "///A/1639/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2951, "atom1_serNum": 29429, "atom2_serNum": 33549, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///A/1447/N4", "atom2_id": "///A/1639/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2952, "atom1_serNum": 29442, "atom2_serNum": 29446, "donAcc_type": "acceptable", "distance": 2.923, "atom1_id": "///A/1448/O2'", "atom2_id": "///A/1448/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2953, "atom1_serNum": 29447, "atom2_serNum": 33528, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///A/1448/N3", "atom2_id": "///A/1638/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2954, "atom1_serNum": 29449, "atom2_serNum": 33527, "donAcc_type": "standard", "distance": 2.813, "atom1_id": "///A/1448/O4", "atom2_id": "///A/1638/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2955, "atom1_serNum": 29469, "atom2_serNum": 33553, "donAcc_type": "standard", "distance": 3.600, "atom1_id": "///A/1449/N4", "atom2_id": "///A/1639/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2956, "atom1_serNum": 29486, "atom2_serNum": 33507, "donAcc_type": "standard", "distance": 2.684, "atom1_id": "///A/1450/O2", "atom2_id": "///A/1637/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2957, "atom1_serNum": 29487, "atom2_serNum": 33505, "donAcc_type": "standard", "distance": 2.861, "atom1_id": "///A/1450/N3", "atom2_id": "///A/1637/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2958, "atom1_serNum": 29489, "atom2_serNum": 33504, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///A/1450/N4", "atom2_id": "///A/1637/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2959, "atom1_serNum": 29502, "atom2_serNum": 29515, "donAcc_type": "acceptable", "distance": 3.090, "atom1_id": "///A/1451/O2'", "atom2_id": "///A/1452/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2960, "atom1_serNum": 29507, "atom2_serNum": 33483, "donAcc_type": "standard", "distance": 2.683, "atom1_id": "///A/1451/N3", "atom2_id": "///A/1636/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2961, "atom1_serNum": 29509, "atom2_serNum": 33482, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///A/1451/O4", "atom2_id": "///A/1636/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2962, "atom1_serNum": 29526, "atom2_serNum": 33462, "donAcc_type": "standard", "distance": 2.747, "atom1_id": "///A/1452/O2", "atom2_id": "///A/1635/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2963, "atom1_serNum": 29527, "atom2_serNum": 33460, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///A/1452/N3", "atom2_id": "///A/1635/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2964, "atom1_serNum": 29529, "atom2_serNum": 33459, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///A/1452/N4", "atom2_id": "///A/1635/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2965, "atom1_serNum": 29549, "atom2_serNum": 33439, "donAcc_type": "standard", "distance": 3.011, "atom1_id": "///A/1453/N6", "atom2_id": "///A/1634/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2966, "atom1_serNum": 29550, "atom2_serNum": 33437, "donAcc_type": "standard", "distance": 2.717, "atom1_id": "///A/1453/N1", "atom2_id": "///A/1634/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2967, "atom1_serNum": 29568, "atom2_serNum": 33419, "donAcc_type": "standard", "distance": 2.759, "atom1_id": "///A/1454/O2", "atom2_id": "///A/1633/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2968, "atom1_serNum": 29569, "atom2_serNum": 33417, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///A/1454/N3", "atom2_id": "///A/1633/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2969, "atom1_serNum": 29571, "atom2_serNum": 33416, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///A/1454/N4", "atom2_id": "///A/1633/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2970, "atom1_serNum": 29584, "atom2_serNum": 29595, "donAcc_type": "acceptable", "distance": 2.234, "atom1_id": "///A/1455/O2'", "atom2_id": "///A/1456/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2971, "atom1_serNum": 29584, "atom2_serNum": 29709, "donAcc_type": "acceptable", "distance": 3.129, "atom1_id": "///A/1455/O2'", "atom2_id": "///A/1461/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2972, "atom1_serNum": 29588, "atom2_serNum": 33396, "donAcc_type": "standard", "distance": 2.686, "atom1_id": "///A/1455/O2", "atom2_id": "///A/1632/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2973, "atom1_serNum": 29589, "atom2_serNum": 33394, "donAcc_type": "standard", "distance": 2.865, "atom1_id": "///A/1455/N3", "atom2_id": "///A/1632/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2974, "atom1_serNum": 29591, "atom2_serNum": 33393, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///A/1455/N4", "atom2_id": "///A/1632/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2975, "atom1_serNum": 29604, "atom2_serNum": 29686, "donAcc_type": "acceptable", "distance": 2.893, "atom1_id": "///A/1456/O2'", "atom2_id": "///A/1460/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2976, "atom1_serNum": 29604, "atom2_serNum": 29705, "donAcc_type": "acceptable", "distance": 2.824, "atom1_id": "///A/1456/O2'", "atom2_id": "///A/1461/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2977, "atom1_serNum": 29604, "atom2_serNum": 33372, "donAcc_type": "acceptable", "distance": 2.966, "atom1_id": "///A/1456/O2'", "atom2_id": "///A/1631/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2978, "atom1_serNum": 29646, "atom2_serNum": 29678, "donAcc_type": "acceptable", "distance": 2.713, "atom1_id": "///A/1458/O2'", "atom2_id": "///A/1460/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2979, "atom1_serNum": 29686, "atom2_serNum": 33371, "donAcc_type": "acceptable", "distance": 2.956, "atom1_id": "///A/1460/O2'", "atom2_id": "///A/1631/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2980, "atom1_serNum": 29696, "atom2_serNum": 33368, "donAcc_type": "standard", "distance": 2.684, "atom1_id": "///A/1460/N2", "atom2_id": "///A/1631/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2981, "atom1_serNum": 29697, "atom2_serNum": 33371, "donAcc_type": "standard", "distance": 3.106, "atom1_id": "///A/1460/N3", "atom2_id": "///A/1631/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2982, "atom1_serNum": 29713, "atom2_serNum": 33351, "donAcc_type": "standard", "distance": 3.076, "atom1_id": "///A/1461/N7", "atom2_id": "///A/1630/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2983, "atom1_serNum": 29716, "atom2_serNum": 33341, "donAcc_type": "acceptable", "distance": 2.748, "atom1_id": "///A/1461/N6", "atom2_id": "///A/1630/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2984, "atom1_serNum": 29716, "atom2_serNum": 33352, "donAcc_type": "standard", "distance": 2.959, "atom1_id": "///A/1461/N6", "atom2_id": "///A/1630/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2985, "atom1_serNum": 29731, "atom2_serNum": 33409, "donAcc_type": "acceptable", "distance": 2.937, "atom1_id": "///A/1462/O2'", "atom2_id": "///A/1633/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2986, "atom1_serNum": 29738, "atom2_serNum": 33328, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/1462/O6", "atom2_id": "///A/1629/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2987, "atom1_serNum": 29739, "atom2_serNum": 33326, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///A/1462/N1", "atom2_id": "///A/1629/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2988, "atom1_serNum": 29741, "atom2_serNum": 33325, "donAcc_type": "standard", "distance": 2.690, "atom1_id": "///A/1462/N2", "atom2_id": "///A/1629/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2989, "atom1_serNum": 29758, "atom2_serNum": 33308, "donAcc_type": "standard", "distance": 2.806, "atom1_id": "///A/1463/O2", "atom2_id": "///A/1628/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2990, "atom1_serNum": 29759, "atom2_serNum": 33306, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///A/1463/N3", "atom2_id": "///A/1628/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2991, "atom1_serNum": 29761, "atom2_serNum": 33305, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///A/1463/N4", "atom2_id": "///A/1628/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 2992, "atom1_serNum": 29774, "atom2_serNum": 33283, "donAcc_type": "acceptable", "distance": 3.174, "atom1_id": "///A/1464/O2'", "atom2_id": "///A/1627/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2993, "atom1_serNum": 29784, "atom2_serNum": 33283, "donAcc_type": "standard", "distance": 3.022, "atom1_id": "///A/1464/N3", "atom2_id": "///A/1627/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2994, "atom1_serNum": 29796, "atom2_serNum": 29806, "donAcc_type": "acceptable", "distance": 2.929, "atom1_id": "///A/1465/O2'", "atom2_id": "///A/1465/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2995, "atom1_serNum": 29796, "atom2_serNum": 29811, "donAcc_type": "acceptable", "distance": 2.963, "atom1_id": "///A/1465/O2'", "atom2_id": "///A/1466/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 2996, "atom1_serNum": 29796, "atom2_serNum": 29842, "donAcc_type": "acceptable", "distance": 2.920, "atom1_id": "///A/1465/O2'", "atom2_id": "///A/1467/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 2997, "atom1_serNum": 29800, "atom2_serNum": 33261, "donAcc_type": "standard", "distance": 2.856, "atom1_id": "///A/1465/N7", "atom2_id": "///A/1626/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2998, "atom1_serNum": 29803, "atom2_serNum": 31435, "donAcc_type": "standard", "distance": 3.521, "atom1_id": "///A/1465/N6", "atom2_id": "///A/1540/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 2999, "atom1_serNum": 29803, "atom2_serNum": 33260, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///A/1465/N6", "atom2_id": "///A/1626/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3000, "atom1_serNum": 29845, "atom2_serNum": 33243, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/1467/O6", "atom2_id": "///A/1625/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3001, "atom1_serNum": 29846, "atom2_serNum": 33241, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///A/1467/N1", "atom2_id": "///A/1625/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3002, "atom1_serNum": 29848, "atom2_serNum": 31457, "donAcc_type": "standard", "distance": 3.639, "atom1_id": "///A/1467/N2", "atom2_id": "///A/1541/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3003, "atom1_serNum": 29848, "atom2_serNum": 33240, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///A/1467/N2", "atom2_id": "///A/1625/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3004, "atom1_serNum": 29849, "atom2_serNum": 31434, "donAcc_type": "standard", "distance": 3.626, "atom1_id": "///A/1467/N3", "atom2_id": "///A/1540/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3005, "atom1_serNum": 29857, "atom2_serNum": 31456, "donAcc_type": "standard", "distance": 3.782, "atom1_id": "///A/1468/O4'", "atom2_id": "///A/1541/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3006, "atom1_serNum": 29859, "atom2_serNum": 31384, "donAcc_type": "acceptable", "distance": 3.373, "atom1_id": "///A/1468/O3'", "atom2_id": "///A/1538/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3007, "atom1_serNum": 29861, "atom2_serNum": 31478, "donAcc_type": "acceptable", "distance": 3.854, "atom1_id": "///A/1468/O2'", "atom2_id": "///A/1542/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3008, "atom1_serNum": 29868, "atom2_serNum": 33221, "donAcc_type": "standard", "distance": 3.022, "atom1_id": "///A/1468/O6", "atom2_id": "///A/1624/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3009, "atom1_serNum": 29869, "atom2_serNum": 33220, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///A/1468/N1", "atom2_id": "///A/1624/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3010, "atom1_serNum": 29871, "atom2_serNum": 31513, "donAcc_type": "acceptable", "distance": 3.920, "atom1_id": "///A/1468/N2", "atom2_id": "///A/1544/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3011, "atom1_serNum": 29871, "atom2_serNum": 33220, "donAcc_type": "standard", "distance": 3.197, "atom1_id": "///A/1468/N2", "atom2_id": "///A/1624/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3012, "atom1_serNum": 29884, "atom2_serNum": 31533, "donAcc_type": "acceptable", "distance": 2.692, "atom1_id": "///A/1469/O2'", "atom2_id": "///A/1545/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3013, "atom1_serNum": 29891, "atom2_serNum": 33203, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///A/1469/O6", "atom2_id": "///A/1623/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3014, "atom1_serNum": 29892, "atom2_serNum": 33201, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///A/1469/N1", "atom2_id": "///A/1623/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3015, "atom1_serNum": 29894, "atom2_serNum": 33200, "donAcc_type": "standard", "distance": 2.811, "atom1_id": "///A/1469/N2", "atom2_id": "///A/1623/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3016, "atom1_serNum": 29914, "atom2_serNum": 33183, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///A/1470/O6", "atom2_id": "///A/1622/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3017, "atom1_serNum": 29915, "atom2_serNum": 33181, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/1470/N1", "atom2_id": "///A/1622/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3018, "atom1_serNum": 29917, "atom2_serNum": 33180, "donAcc_type": "standard", "distance": 2.764, "atom1_id": "///A/1470/N2", "atom2_id": "///A/1622/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3019, "atom1_serNum": 29934, "atom2_serNum": 60129, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///A/1471/N7", "atom2_id": "///C/31/NZ", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 3020, "atom1_serNum": 29940, "atom2_serNum": 33160, "donAcc_type": "standard", "distance": 2.615, "atom1_id": "///A/1471/N2", "atom2_id": "///A/1621/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3021, "atom1_serNum": 29945, "atom2_serNum": 29976, "donAcc_type": "acceptable", "distance": 2.476, "atom1_id": "///A/1472/OP2", "atom2_id": "///A/1473/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3022, "atom1_serNum": 29953, "atom2_serNum": 33138, "donAcc_type": "acceptable", "distance": 3.014, "atom1_id": "///A/1472/O2'", "atom2_id": "///A/1620/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3023, "atom1_serNum": 29960, "atom2_serNum": 60129, "donAcc_type": "standard", "distance": 2.741, "atom1_id": "///A/1472/O6", "atom2_id": "///C/31/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3024, "atom1_serNum": 29963, "atom2_serNum": 33135, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///A/1472/N2", "atom2_id": "///A/1620/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3025, "atom1_serNum": 29964, "atom2_serNum": 33138, "donAcc_type": "standard", "distance": 2.930, "atom1_id": "///A/1472/N3", "atom2_id": "///A/1620/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3026, "atom1_serNum": 29980, "atom2_serNum": 33116, "donAcc_type": "standard", "distance": 3.600, "atom1_id": "///A/1473/N7", "atom2_id": "///A/1619/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3027, "atom1_serNum": 29983, "atom2_serNum": 33101, "donAcc_type": "standard", "distance": 3.194, "atom1_id": "///A/1473/N6", "atom2_id": "///A/1619/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3028, "atom1_serNum": 29983, "atom2_serNum": 33113, "donAcc_type": "standard", "distance": 3.023, "atom1_id": "///A/1473/N6", "atom2_id": "///A/1619/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3029, "atom1_serNum": 29998, "atom2_serNum": 33057, "donAcc_type": "acceptable", "distance": 2.937, "atom1_id": "///A/1474/O2'", "atom2_id": "///A/1617/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3030, "atom1_serNum": 30005, "atom2_serNum": 33079, "donAcc_type": "standard", "distance": 2.257, "atom1_id": "///A/1474/N4", "atom2_id": "///A/1618/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3031, "atom1_serNum": 30005, "atom2_serNum": 33091, "donAcc_type": "standard", "distance": 3.936, "atom1_id": "///A/1474/N4", "atom2_id": "///A/1618/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3032, "atom1_serNum": 30018, "atom2_serNum": 60330, "donAcc_type": "acceptable", "distance": 3.945, "atom1_id": "///A/1475/O2'", "atom2_id": "///C/58/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3033, "atom1_serNum": 30025, "atom2_serNum": 32965, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///A/1475/O6", "atom2_id": "///A/1612/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3034, "atom1_serNum": 30026, "atom2_serNum": 32963, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///A/1475/N1", "atom2_id": "///A/1612/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3035, "atom1_serNum": 30028, "atom2_serNum": 32962, "donAcc_type": "standard", "distance": 2.819, "atom1_id": "///A/1475/N2", "atom2_id": "///A/1612/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3036, "atom1_serNum": 30041, "atom2_serNum": 30057, "donAcc_type": "acceptable", "distance": 3.076, "atom1_id": "///A/1476/O2'", "atom2_id": "///A/1477/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3037, "atom1_serNum": 30045, "atom2_serNum": 32945, "donAcc_type": "standard", "distance": 2.798, "atom1_id": "///A/1476/O2", "atom2_id": "///A/1611/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3038, "atom1_serNum": 30046, "atom2_serNum": 32943, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///A/1476/N3", "atom2_id": "///A/1611/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3039, "atom1_serNum": 30048, "atom2_serNum": 32942, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///A/1476/N4", "atom2_id": "///A/1611/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3040, "atom1_serNum": 30065, "atom2_serNum": 32860, "donAcc_type": "standard", "distance": 3.455, "atom1_id": "///A/1477/N7", "atom2_id": "///A/1607/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3041, "atom1_serNum": 30068, "atom2_serNum": 32858, "donAcc_type": "standard", "distance": 3.481, "atom1_id": "///A/1477/N6", "atom2_id": "///A/1607/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3042, "atom1_serNum": 30068, "atom2_serNum": 32922, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///A/1477/N6", "atom2_id": "///A/1610/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3043, "atom1_serNum": 30069, "atom2_serNum": 32920, "donAcc_type": "standard", "distance": 2.870, "atom1_id": "///A/1477/N1", "atom2_id": "///A/1610/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3044, "atom1_serNum": 30083, "atom2_serNum": 30102, "donAcc_type": "acceptable", "distance": 2.681, "atom1_id": "///A/1478/O2'", "atom2_id": "///A/1479/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3045, "atom1_serNum": 30090, "atom2_serNum": 32902, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///A/1478/O6", "atom2_id": "///A/1609/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3046, "atom1_serNum": 30091, "atom2_serNum": 32900, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///A/1478/N1", "atom2_id": "///A/1609/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3047, "atom1_serNum": 30093, "atom2_serNum": 32899, "donAcc_type": "standard", "distance": 2.855, "atom1_id": "///A/1478/N2", "atom2_id": "///A/1609/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3048, "atom1_serNum": 30113, "atom2_serNum": 32880, "donAcc_type": "standard", "distance": 2.592, "atom1_id": "///A/1479/O6", "atom2_id": "///A/1608/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3049, "atom1_serNum": 30114, "atom2_serNum": 32881, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///A/1479/N1", "atom2_id": "///A/1608/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3050, "atom1_serNum": 30136, "atom2_serNum": 32839, "donAcc_type": "standard", "distance": 3.105, "atom1_id": "///A/1480/N6", "atom2_id": "///A/1606/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3051, "atom1_serNum": 30158, "atom2_serNum": 32818, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///A/1481/O6", "atom2_id": "///A/1605/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3052, "atom1_serNum": 30159, "atom2_serNum": 32816, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///A/1481/N1", "atom2_id": "///A/1605/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3053, "atom1_serNum": 30161, "atom2_serNum": 32815, "donAcc_type": "standard", "distance": 2.773, "atom1_id": "///A/1481/N2", "atom2_id": "///A/1605/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3054, "atom1_serNum": 30174, "atom2_serNum": 31060, "donAcc_type": "acceptable", "distance": 3.014, "atom1_id": "///A/1482/O2'", "atom2_id": "///A/1523/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3055, "atom1_serNum": 30181, "atom2_serNum": 32798, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///A/1482/O6", "atom2_id": "///A/1604/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3056, "atom1_serNum": 30182, "atom2_serNum": 32796, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///A/1482/N1", "atom2_id": "///A/1604/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3057, "atom1_serNum": 30184, "atom2_serNum": 32795, "donAcc_type": "standard", "distance": 2.710, "atom1_id": "///A/1482/N2", "atom2_id": "///A/1604/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3058, "atom1_serNum": 30195, "atom2_serNum": 31910, "donAcc_type": "acceptable", "distance": 3.143, "atom1_id": "///A/1483/O3'", "atom2_id": "///A/1563/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3059, "atom1_serNum": 30197, "atom2_serNum": 31910, "donAcc_type": "acceptable", "distance": 2.279, "atom1_id": "///A/1483/O2'", "atom2_id": "///A/1563/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3060, "atom1_serNum": 30204, "atom2_serNum": 32778, "donAcc_type": "standard", "distance": 3.013, "atom1_id": "///A/1483/N6", "atom2_id": "///A/1603/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3061, "atom1_serNum": 30205, "atom2_serNum": 32776, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///A/1483/N1", "atom2_id": "///A/1603/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3062, "atom1_serNum": 30223, "atom2_serNum": 32736, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///A/1484/O2", "atom2_id": "///A/1601/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3063, "atom1_serNum": 30224, "atom2_serNum": 32733, "donAcc_type": "standard", "distance": 2.990, "atom1_id": "///A/1484/N3", "atom2_id": "///A/1601/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3064, "atom1_serNum": 30247, "atom2_serNum": 32710, "donAcc_type": "questionable", "distance": 3.013, "atom1_id": "///A/1485/N1", "atom2_id": "///A/1600/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3065, "atom1_serNum": 30268, "atom2_serNum": 32691, "donAcc_type": "standard", "distance": 2.833, "atom1_id": "///A/1486/O6", "atom2_id": "///A/1599/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3066, "atom1_serNum": 30269, "atom2_serNum": 32690, "donAcc_type": "standard", "distance": 2.967, "atom1_id": "///A/1486/N1", "atom2_id": "///A/1599/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3067, "atom1_serNum": 30284, "atom2_serNum": 34264, "donAcc_type": "acceptable", "distance": 3.298, "atom1_id": "///A/1487/O2'", "atom2_id": "///A/1673/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3068, "atom1_serNum": 30291, "atom2_serNum": 32673, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///A/1487/O6", "atom2_id": "///A/1598/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3069, "atom1_serNum": 30292, "atom2_serNum": 32671, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///A/1487/N1", "atom2_id": "///A/1598/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3070, "atom1_serNum": 30294, "atom2_serNum": 32670, "donAcc_type": "standard", "distance": 2.769, "atom1_id": "///A/1487/N2", "atom2_id": "///A/1598/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3071, "atom1_serNum": 30314, "atom2_serNum": 32653, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///A/1488/O6", "atom2_id": "///A/1597/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3072, "atom1_serNum": 30315, "atom2_serNum": 32651, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/1488/N1", "atom2_id": "///A/1597/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3073, "atom1_serNum": 30317, "atom2_serNum": 32650, "donAcc_type": "standard", "distance": 2.739, "atom1_id": "///A/1488/N2", "atom2_id": "///A/1597/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3074, "atom1_serNum": 30337, "atom2_serNum": 32631, "donAcc_type": "standard", "distance": 2.225, "atom1_id": "///A/1489/O4", "atom2_id": "///A/1596/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3075, "atom1_serNum": 30357, "atom2_serNum": 32613, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///A/1490/N6", "atom2_id": "///A/1595/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3076, "atom1_serNum": 30358, "atom2_serNum": 32611, "donAcc_type": "standard", "distance": 2.852, "atom1_id": "///A/1490/N1", "atom2_id": "///A/1595/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3077, "atom1_serNum": 30376, "atom2_serNum": 32611, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///A/1491/N7", "atom2_id": "///A/1595/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3078, "atom1_serNum": 30379, "atom2_serNum": 32613, "donAcc_type": "standard", "distance": 2.570, "atom1_id": "///A/1491/N6", "atom2_id": "///A/1595/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3079, "atom1_serNum": 30380, "atom2_serNum": 30829, "donAcc_type": "standard", "distance": 3.294, "atom1_id": "///A/1491/N1", "atom2_id": "///A/1512/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3080, "atom1_serNum": 30394, "atom2_serNum": 32561, "donAcc_type": "acceptable", "distance": 3.312, "atom1_id": "///A/1492/O2'", "atom2_id": "///A/1593/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3081, "atom1_serNum": 30401, "atom2_serNum": 30808, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///A/1492/O6", "atom2_id": "///A/1511/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3082, "atom1_serNum": 30402, "atom2_serNum": 30806, "donAcc_type": "standard", "distance": 2.844, "atom1_id": "///A/1492/N1", "atom2_id": "///A/1511/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3083, "atom1_serNum": 30404, "atom2_serNum": 30805, "donAcc_type": "standard", "distance": 2.703, "atom1_id": "///A/1492/N2", "atom2_id": "///A/1511/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3084, "atom1_serNum": 30404, "atom2_serNum": 32571, "donAcc_type": "standard", "distance": 3.690, "atom1_id": "///A/1492/N2", "atom2_id": "///A/1593/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3085, "atom1_serNum": 30417, "atom2_serNum": 32539, "donAcc_type": "acceptable", "distance": 3.117, "atom1_id": "///A/1493/O2'", "atom2_id": "///A/1592/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3086, "atom1_serNum": 30417, "atom2_serNum": 32549, "donAcc_type": "acceptable", "distance": 2.315, "atom1_id": "///A/1493/O2'", "atom2_id": "///A/1592/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3087, "atom1_serNum": 30421, "atom2_serNum": 30788, "donAcc_type": "standard", "distance": 2.683, "atom1_id": "///A/1493/O2", "atom2_id": "///A/1510/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3088, "atom1_serNum": 30422, "atom2_serNum": 30786, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///A/1493/N3", "atom2_id": "///A/1510/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3089, "atom1_serNum": 30424, "atom2_serNum": 30785, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///A/1493/N4", "atom2_id": "///A/1510/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3090, "atom1_serNum": 30444, "atom2_serNum": 30765, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///A/1494/O6", "atom2_id": "///A/1509/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3091, "atom1_serNum": 30445, "atom2_serNum": 30763, "donAcc_type": "standard", "distance": 2.858, "atom1_id": "///A/1494/N1", "atom2_id": "///A/1509/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3092, "atom1_serNum": 30447, "atom2_serNum": 30762, "donAcc_type": "standard", "distance": 2.704, "atom1_id": "///A/1494/N2", "atom2_id": "///A/1509/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3093, "atom1_serNum": 30467, "atom2_serNum": 30743, "donAcc_type": "standard", "distance": 2.329, "atom1_id": "///A/1495/N4", "atom2_id": "///A/1508/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3094, "atom1_serNum": 30480, "atom2_serNum": 30494, "donAcc_type": "acceptable", "distance": 2.825, "atom1_id": "///A/1496/O2'", "atom2_id": "///A/1497/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3095, "atom1_serNum": 30487, "atom2_serNum": 30723, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///A/1496/O6", "atom2_id": "///A/1507/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3096, "atom1_serNum": 30487, "atom2_serNum": 30745, "donAcc_type": "standard", "distance": 2.700, "atom1_id": "///A/1496/O6", "atom2_id": "///A/1508/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3097, "atom1_serNum": 30488, "atom2_serNum": 30722, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///A/1496/N1", "atom2_id": "///A/1507/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3098, "atom1_serNum": 30490, "atom2_serNum": 30533, "donAcc_type": "standard", "distance": 3.240, "atom1_id": "///A/1496/N2", "atom2_id": "///A/1498/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3099, "atom1_serNum": 30490, "atom2_serNum": 30722, "donAcc_type": "standard", "distance": 3.150, "atom1_id": "///A/1496/N2", "atom2_id": "///A/1507/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3100, "atom1_serNum": 30503, "atom2_serNum": 30662, "donAcc_type": "acceptable", "distance": 2.497, "atom1_id": "///A/1497/O2'", "atom2_id": "///A/1504/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3101, "atom1_serNum": 30511, "atom2_serNum": 30683, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///A/1497/N1", "atom2_id": "///A/1505/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3102, "atom1_serNum": 30513, "atom2_serNum": 30680, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///A/1497/N2", "atom2_id": "///A/1505/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3103, "atom1_serNum": 30526, "atom2_serNum": 53347, "donAcc_type": "acceptable", "distance": 3.018, "atom1_id": "///A/1498/O2'", "atom2_id": "///A/2731/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3104, "atom1_serNum": 30559, "atom2_serNum": 68676, "donAcc_type": "standard", "distance": 3.668, "atom1_id": "///A/1500/OP1", "atom2_id": "///J/81/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3105, "atom1_serNum": 30572, "atom2_serNum": 68520, "donAcc_type": "standard", "distance": 3.298, "atom1_id": "///A/1500/O2", "atom2_id": "///J/60/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3106, "atom1_serNum": 30588, "atom2_serNum": 56490, "donAcc_type": "acceptable", "distance": 3.213, "atom1_id": "///A/1501/O2'", "atom2_id": "///A/2878/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3107, "atom1_serNum": 30595, "atom2_serNum": 53390, "donAcc_type": "standard", "distance": 2.508, "atom1_id": "///A/1501/O4", "atom2_id": "///A/2733/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3108, "atom1_serNum": 30615, "atom2_serNum": 53370, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///A/1502/O6", "atom2_id": "///A/2732/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3109, "atom1_serNum": 30616, "atom2_serNum": 53368, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/1502/N1", "atom2_id": "///A/2732/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3110, "atom1_serNum": 30618, "atom2_serNum": 53367, "donAcc_type": "standard", "distance": 2.826, "atom1_id": "///A/1502/N2", "atom2_id": "///A/2732/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3111, "atom1_serNum": 30638, "atom2_serNum": 53348, "donAcc_type": "standard", "distance": 2.309, "atom1_id": "///A/1503/O6", "atom2_id": "///A/2731/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3112, "atom1_serNum": 30718, "atom2_serNum": 30734, "donAcc_type": "acceptable", "distance": 3.140, "atom1_id": "///A/1507/O2'", "atom2_id": "///A/1508/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3113, "atom1_serNum": 30718, "atom2_serNum": 53350, "donAcc_type": "acceptable", "distance": 3.145, "atom1_id": "///A/1507/O2'", "atom2_id": "///A/2731/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3114, "atom1_serNum": 30734, "atom2_serNum": 53350, "donAcc_type": "standard", "distance": 3.658, "atom1_id": "///A/1508/O4'", "atom2_id": "///A/2731/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3115, "atom1_serNum": 30738, "atom2_serNum": 30754, "donAcc_type": "acceptable", "distance": 3.137, "atom1_id": "///A/1508/O2'", "atom2_id": "///A/1509/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3116, "atom1_serNum": 30738, "atom2_serNum": 53340, "donAcc_type": "acceptable", "distance": 3.173, "atom1_id": "///A/1508/O2'", "atom2_id": "///A/2731/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3117, "atom1_serNum": 30778, "atom2_serNum": 32170, "donAcc_type": "acceptable", "distance": 3.345, "atom1_id": "///A/1510/O2'", "atom2_id": "///A/1575/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3118, "atom1_serNum": 30801, "atom2_serNum": 30817, "donAcc_type": "acceptable", "distance": 2.725, "atom1_id": "///A/1511/O2'", "atom2_id": "///A/1512/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3119, "atom1_serNum": 30801, "atom2_serNum": 32569, "donAcc_type": "acceptable", "distance": 3.454, "atom1_id": "///A/1511/O2'", "atom2_id": "///A/1593/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3120, "atom1_serNum": 30821, "atom2_serNum": 32583, "donAcc_type": "acceptable", "distance": 2.088, "atom1_id": "///A/1512/O2'", "atom2_id": "///A/1594/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3121, "atom1_serNum": 30844, "atom2_serNum": 30860, "donAcc_type": "acceptable", "distance": 2.849, "atom1_id": "///A/1513/O2'", "atom2_id": "///A/1514/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3122, "atom1_serNum": 30848, "atom2_serNum": 32114, "donAcc_type": "standard", "distance": 2.485, "atom1_id": "///A/1513/O2", "atom2_id": "///A/1572/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3123, "atom1_serNum": 30849, "atom2_serNum": 32112, "donAcc_type": "questionable", "distance": 2.785, "atom1_id": "///A/1513/N3", "atom2_id": "///A/1572/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3124, "atom1_serNum": 30851, "atom2_serNum": 32111, "donAcc_type": "questionable", "distance": 2.829, "atom1_id": "///A/1513/O4", "atom2_id": "///A/1572/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3125, "atom1_serNum": 30868, "atom2_serNum": 32091, "donAcc_type": "standard", "distance": 2.754, "atom1_id": "///A/1514/O2", "atom2_id": "///A/1571/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3126, "atom1_serNum": 30869, "atom2_serNum": 32089, "donAcc_type": "standard", "distance": 2.859, "atom1_id": "///A/1514/N3", "atom2_id": "///A/1571/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3127, "atom1_serNum": 30871, "atom2_serNum": 32088, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///A/1514/N4", "atom2_id": "///A/1571/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3128, "atom1_serNum": 30876, "atom2_serNum": 32023, "donAcc_type": "questionable", "distance": 3.018, "atom1_id": "///A/1515/OP2", "atom2_id": "///A/1568/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3129, "atom1_serNum": 30876, "atom2_serNum": 32046, "donAcc_type": "standard", "distance": 2.808, "atom1_id": "///A/1515/OP2", "atom2_id": "///A/1569/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3130, "atom1_serNum": 30888, "atom2_serNum": 32046, "donAcc_type": "standard", "distance": 3.073, "atom1_id": "///A/1515/O2", "atom2_id": "///A/1569/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3131, "atom1_serNum": 30891, "atom2_serNum": 32016, "donAcc_type": "acceptable", "distance": 3.738, "atom1_id": "///A/1515/N4", "atom2_id": "///A/1568/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3132, "atom1_serNum": 30911, "atom2_serNum": 32016, "donAcc_type": "acceptable", "distance": 3.176, "atom1_id": "///A/1516/N6", "atom2_id": "///A/1568/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3133, "atom1_serNum": 30933, "atom2_serNum": 32000, "donAcc_type": "standard", "distance": 3.394, "atom1_id": "///A/1517/N6", "atom2_id": "///A/1567/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3134, "atom1_serNum": 30933, "atom2_serNum": 32001, "donAcc_type": "questionable", "distance": 2.857, "atom1_id": "///A/1517/N6", "atom2_id": "///A/1567/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3135, "atom1_serNum": 30948, "atom2_serNum": 30962, "donAcc_type": "acceptable", "distance": 3.043, "atom1_id": "///A/1518/O2'", "atom2_id": "///A/1519/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3136, "atom1_serNum": 30948, "atom2_serNum": 30964, "donAcc_type": "acceptable", "distance": 2.307, "atom1_id": "///A/1518/O2'", "atom2_id": "///A/1519/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3137, "atom1_serNum": 30948, "atom2_serNum": 30967, "donAcc_type": "acceptable", "distance": 2.668, "atom1_id": "///A/1518/O2'", "atom2_id": "///A/1519/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3138, "atom1_serNum": 30976, "atom2_serNum": 31981, "donAcc_type": "standard", "distance": 2.487, "atom1_id": "///A/1519/N3", "atom2_id": "///A/1566/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3139, "atom1_serNum": 30978, "atom2_serNum": 31960, "donAcc_type": "standard", "distance": 3.844, "atom1_id": "///A/1519/N4", "atom2_id": "///A/1565/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3140, "atom1_serNum": 30998, "atom2_serNum": 31938, "donAcc_type": "standard", "distance": 2.412, "atom1_id": "///A/1520/N6", "atom2_id": "///A/1564/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3141, "atom1_serNum": 30999, "atom2_serNum": 31937, "donAcc_type": "questionable", "distance": 2.869, "atom1_id": "///A/1520/N1", "atom2_id": "///A/1564/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3142, "atom1_serNum": 31021, "atom2_serNum": 31917, "donAcc_type": "standard", "distance": 2.648, "atom1_id": "///A/1521/N1", "atom2_id": "///A/1563/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3143, "atom1_serNum": 31023, "atom2_serNum": 31918, "donAcc_type": "questionable", "distance": 2.728, "atom1_id": "///A/1521/N2", "atom2_id": "///A/1563/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3144, "atom1_serNum": 31036, "atom2_serNum": 31052, "donAcc_type": "acceptable", "distance": 3.009, "atom1_id": "///A/1522/O2'", "atom2_id": "///A/1523/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3145, "atom1_serNum": 31040, "atom2_serNum": 31896, "donAcc_type": "questionable", "distance": 2.844, "atom1_id": "///A/1522/O2", "atom2_id": "///A/1562/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3146, "atom1_serNum": 31063, "atom2_serNum": 32811, "donAcc_type": "acceptable", "distance": 2.394, "atom1_id": "///A/1523/O4", "atom2_id": "///A/1605/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3147, "atom1_serNum": 31083, "atom2_serNum": 31852, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///A/1524/N6", "atom2_id": "///A/1560/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3148, "atom1_serNum": 31084, "atom2_serNum": 31850, "donAcc_type": "standard", "distance": 2.807, "atom1_id": "///A/1524/N1", "atom2_id": "///A/1560/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3149, "atom1_serNum": 31098, "atom2_serNum": 32873, "donAcc_type": "acceptable", "distance": 3.624, "atom1_id": "///A/1525/O2'", "atom2_id": "///A/1608/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3150, "atom1_serNum": 31105, "atom2_serNum": 31832, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///A/1525/O6", "atom2_id": "///A/1559/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3151, "atom1_serNum": 31106, "atom2_serNum": 31830, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///A/1525/N1", "atom2_id": "///A/1559/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3152, "atom1_serNum": 31108, "atom2_serNum": 31829, "donAcc_type": "standard", "distance": 2.710, "atom1_id": "///A/1525/N2", "atom2_id": "///A/1559/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3153, "atom1_serNum": 31128, "atom2_serNum": 31812, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///A/1526/O6", "atom2_id": "///A/1558/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3154, "atom1_serNum": 31129, "atom2_serNum": 31810, "donAcc_type": "standard", "distance": 2.851, "atom1_id": "///A/1526/N1", "atom2_id": "///A/1558/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3155, "atom1_serNum": 31131, "atom2_serNum": 31809, "donAcc_type": "standard", "distance": 2.705, "atom1_id": "///A/1526/N2", "atom2_id": "///A/1558/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3156, "atom1_serNum": 31144, "atom2_serNum": 31155, "donAcc_type": "acceptable", "distance": 3.120, "atom1_id": "///A/1527/O2'", "atom2_id": "///A/1528/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3157, "atom1_serNum": 31148, "atom2_serNum": 31792, "donAcc_type": "standard", "distance": 2.795, "atom1_id": "///A/1527/O2", "atom2_id": "///A/1557/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3158, "atom1_serNum": 31149, "atom2_serNum": 31790, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///A/1527/N3", "atom2_id": "///A/1557/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3159, "atom1_serNum": 31151, "atom2_serNum": 31789, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///A/1527/N4", "atom2_id": "///A/1557/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3160, "atom1_serNum": 31180, "atom2_serNum": 31745, "donAcc_type": "standard", "distance": 3.357, "atom1_id": "///A/1529/O4'", "atom2_id": "///A/1555/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3161, "atom1_serNum": 31184, "atom2_serNum": 31200, "donAcc_type": "acceptable", "distance": 2.425, "atom1_id": "///A/1529/O2'", "atom2_id": "///A/1530/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3162, "atom1_serNum": 31184, "atom2_serNum": 31203, "donAcc_type": "acceptable", "distance": 2.335, "atom1_id": "///A/1529/O2'", "atom2_id": "///A/1530/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3163, "atom1_serNum": 31184, "atom2_serNum": 31768, "donAcc_type": "acceptable", "distance": 3.872, "atom1_id": "///A/1529/O2'", "atom2_id": "///A/1556/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3164, "atom1_serNum": 31191, "atom2_serNum": 31683, "donAcc_type": "standard", "distance": 2.848, "atom1_id": "///A/1529/O6", "atom2_id": "///A/1552/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3165, "atom1_serNum": 31192, "atom2_serNum": 31681, "donAcc_type": "standard", "distance": 2.816, "atom1_id": "///A/1529/N1", "atom2_id": "///A/1552/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3166, "atom1_serNum": 31194, "atom2_serNum": 31680, "donAcc_type": "standard", "distance": 2.628, "atom1_id": "///A/1529/N2", "atom2_id": "///A/1552/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3167, "atom1_serNum": 31214, "atom2_serNum": 31663, "donAcc_type": "standard", "distance": 2.832, "atom1_id": "///A/1530/O6", "atom2_id": "///A/1551/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3168, "atom1_serNum": 31214, "atom2_serNum": 31683, "donAcc_type": "standard", "distance": 3.172, "atom1_id": "///A/1530/O6", "atom2_id": "///A/1552/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3169, "atom1_serNum": 31215, "atom2_serNum": 31661, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///A/1530/N1", "atom2_id": "///A/1551/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3170, "atom1_serNum": 31215, "atom2_serNum": 31681, "donAcc_type": "standard", "distance": 2.706, "atom1_id": "///A/1530/N1", "atom2_id": "///A/1552/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3171, "atom1_serNum": 31217, "atom2_serNum": 31660, "donAcc_type": "standard", "distance": 2.799, "atom1_id": "///A/1530/N2", "atom2_id": "///A/1551/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3172, "atom1_serNum": 31237, "atom2_serNum": 31643, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/1531/O6", "atom2_id": "///A/1550/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3173, "atom1_serNum": 31238, "atom2_serNum": 31641, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///A/1531/N1", "atom2_id": "///A/1550/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3174, "atom1_serNum": 31240, "atom2_serNum": 31640, "donAcc_type": "standard", "distance": 2.725, "atom1_id": "///A/1531/N2", "atom2_id": "///A/1550/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3175, "atom1_serNum": 31260, "atom2_serNum": 31623, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///A/1532/N6", "atom2_id": "///A/1549/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3176, "atom1_serNum": 31261, "atom2_serNum": 31621, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///A/1532/N1", "atom2_id": "///A/1549/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3177, "atom1_serNum": 31282, "atom2_serNum": 31603, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///A/1533/N6", "atom2_id": "///A/1548/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3178, "atom1_serNum": 31283, "atom2_serNum": 31601, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///A/1533/N1", "atom2_id": "///A/1548/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3179, "atom1_serNum": 31304, "atom2_serNum": 31583, "donAcc_type": "standard", "distance": 2.940, "atom1_id": "///A/1534/N6", "atom2_id": "///A/1547/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3180, "atom1_serNum": 31305, "atom2_serNum": 31581, "donAcc_type": "standard", "distance": 2.785, "atom1_id": "///A/1534/N1", "atom2_id": "///A/1547/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3181, "atom1_serNum": 31368, "atom2_serNum": 31540, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///A/1537/O6", "atom2_id": "///A/1545/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3182, "atom1_serNum": 31369, "atom2_serNum": 31538, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///A/1537/N1", "atom2_id": "///A/1545/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3183, "atom1_serNum": 31371, "atom2_serNum": 31537, "donAcc_type": "standard", "distance": 2.685, "atom1_id": "///A/1537/N2", "atom2_id": "///A/1545/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3184, "atom1_serNum": 31391, "atom2_serNum": 31520, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///A/1538/O6", "atom2_id": "///A/1544/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3185, "atom1_serNum": 31392, "atom2_serNum": 31518, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/1538/N1", "atom2_id": "///A/1544/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3186, "atom1_serNum": 31394, "atom2_serNum": 31517, "donAcc_type": "standard", "distance": 2.760, "atom1_id": "///A/1538/N2", "atom2_id": "///A/1544/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3187, "atom1_serNum": 31449, "atom2_serNum": 33256, "donAcc_type": "acceptable", "distance": 3.359, "atom1_id": "///A/1541/O2'", "atom2_id": "///A/1626/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3188, "atom1_serNum": 31459, "atom2_serNum": 33256, "donAcc_type": "acceptable", "distance": 3.380, "atom1_id": "///A/1541/N3", "atom2_id": "///A/1626/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3189, "atom1_serNum": 31467, "atom2_serNum": 33256, "donAcc_type": "acceptable", "distance": 3.470, "atom1_id": "///A/1542/O4'", "atom2_id": "///A/1626/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3190, "atom1_serNum": 31471, "atom2_serNum": 33234, "donAcc_type": "acceptable", "distance": 3.128, "atom1_id": "///A/1542/O2'", "atom2_id": "///A/1625/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3191, "atom1_serNum": 31471, "atom2_serNum": 33252, "donAcc_type": "acceptable", "distance": 3.510, "atom1_id": "///A/1542/O2'", "atom2_id": "///A/1626/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3192, "atom1_serNum": 31481, "atom2_serNum": 33236, "donAcc_type": "acceptable", "distance": 2.738, "atom1_id": "///A/1542/N3", "atom2_id": "///A/1625/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3193, "atom1_serNum": 31485, "atom2_serNum": 31520, "donAcc_type": "standard", "distance": 2.473, "atom1_id": "///A/1543/OP2", "atom2_id": "///A/1544/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3194, "atom1_serNum": 31493, "atom2_serNum": 33247, "donAcc_type": "acceptable", "distance": 3.322, "atom1_id": "///A/1543/O2'", "atom2_id": "///A/1626/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3195, "atom1_serNum": 31509, "atom2_serNum": 33232, "donAcc_type": "questionable", "distance": 3.280, "atom1_id": "///A/1544/O4'", "atom2_id": "///A/1625/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3196, "atom1_serNum": 31567, "atom2_serNum": 60666, "donAcc_type": "standard", "distance": 2.865, "atom1_id": "///A/1547/OP1", "atom2_id": "///C/101/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3197, "atom1_serNum": 31576, "atom2_serNum": 31592, "donAcc_type": "acceptable", "distance": 3.089, "atom1_id": "///A/1547/O2'", "atom2_id": "///A/1548/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3198, "atom1_serNum": 31616, "atom2_serNum": 31629, "donAcc_type": "acceptable", "distance": 2.684, "atom1_id": "///A/1549/O2'", "atom2_id": "///A/1550/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3199, "atom1_serNum": 31676, "atom2_serNum": 31692, "donAcc_type": "acceptable", "distance": 2.898, "atom1_id": "///A/1552/O2'", "atom2_id": "///A/1553/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3200, "atom1_serNum": 31696, "atom2_serNum": 31710, "donAcc_type": "acceptable", "distance": 3.033, "atom1_id": "///A/1553/O2'", "atom2_id": "///A/1554/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3201, "atom1_serNum": 31711, "atom2_serNum": 31734, "donAcc_type": "questionable", "distance": 2.633, "atom1_id": "///A/1554/O5'", "atom2_id": "///A/1555/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3202, "atom1_serNum": 31888, "atom2_serNum": 32791, "donAcc_type": "acceptable", "distance": 2.295, "atom1_id": "///A/1562/O2'", "atom2_id": "///A/1604/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3203, "atom1_serNum": 31888, "atom2_serNum": 32807, "donAcc_type": "acceptable", "distance": 3.642, "atom1_id": "///A/1562/O2'", "atom2_id": "///A/1605/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3204, "atom1_serNum": 32008, "atom2_serNum": 32039, "donAcc_type": "acceptable", "distance": 2.490, "atom1_id": "///A/1568/OP2", "atom2_id": "///A/1569/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3205, "atom1_serNum": 32026, "atom2_serNum": 32039, "donAcc_type": "acceptable", "distance": 2.236, "atom1_id": "///A/1568/N2", "atom2_id": "///A/1569/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3206, "atom1_serNum": 32104, "atom2_serNum": 32119, "donAcc_type": "acceptable", "distance": 3.040, "atom1_id": "///A/1572/O2'", "atom2_id": "///A/1573/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3207, "atom1_serNum": 32104, "atom2_serNum": 32120, "donAcc_type": "acceptable", "distance": 2.319, "atom1_id": "///A/1572/O2'", "atom2_id": "///A/1573/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3208, "atom1_serNum": 32104, "atom2_serNum": 32123, "donAcc_type": "acceptable", "distance": 3.067, "atom1_id": "///A/1572/O2'", "atom2_id": "///A/1573/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3209, "atom1_serNum": 32127, "atom2_serNum": 32143, "donAcc_type": "acceptable", "distance": 2.612, "atom1_id": "///A/1573/O2'", "atom2_id": "///A/1574/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3210, "atom1_serNum": 32131, "atom2_serNum": 32593, "donAcc_type": "standard", "distance": 2.699, "atom1_id": "///A/1573/O2", "atom2_id": "///A/1594/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3211, "atom1_serNum": 32132, "atom2_serNum": 32591, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///A/1573/N3", "atom2_id": "///A/1594/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3212, "atom1_serNum": 32134, "atom2_serNum": 32590, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///A/1573/N4", "atom2_id": "///A/1594/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3213, "atom1_serNum": 32155, "atom2_serNum": 32531, "donAcc_type": "standard", "distance": 2.558, "atom1_id": "///A/1574/N1", "atom2_id": "///A/1592/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3214, "atom1_serNum": 32157, "atom2_serNum": 32531, "donAcc_type": "standard", "distance": 3.255, "atom1_id": "///A/1574/N2", "atom2_id": "///A/1592/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3215, "atom1_serNum": 32157, "atom2_serNum": 32565, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///A/1574/N2", "atom2_id": "///A/1593/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3216, "atom1_serNum": 32158, "atom2_serNum": 32568, "donAcc_type": "standard", "distance": 2.840, "atom1_id": "///A/1574/N3", "atom2_id": "///A/1593/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3217, "atom1_serNum": 32162, "atom2_serNum": 32526, "donAcc_type": "standard", "distance": 3.270, "atom1_id": "///A/1575/OP2", "atom2_id": "///A/1591/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3218, "atom1_serNum": 32166, "atom2_serNum": 32546, "donAcc_type": "standard", "distance": 3.236, "atom1_id": "///A/1575/O4'", "atom2_id": "///A/1592/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3219, "atom1_serNum": 32174, "atom2_serNum": 32526, "donAcc_type": "standard", "distance": 2.776, "atom1_id": "///A/1575/N7", "atom2_id": "///A/1591/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3220, "atom1_serNum": 32177, "atom2_serNum": 32516, "donAcc_type": "acceptable", "distance": 2.820, "atom1_id": "///A/1575/N6", "atom2_id": "///A/1591/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3221, "atom1_serNum": 32177, "atom2_serNum": 32527, "donAcc_type": "standard", "distance": 3.232, "atom1_id": "///A/1575/N6", "atom2_id": "///A/1591/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3222, "atom1_serNum": 32192, "atom2_serNum": 32208, "donAcc_type": "acceptable", "distance": 2.856, "atom1_id": "///A/1576/O2'", "atom2_id": "///A/1577/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3223, "atom1_serNum": 32199, "atom2_serNum": 32503, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///A/1576/O6", "atom2_id": "///A/1590/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3224, "atom1_serNum": 32200, "atom2_serNum": 32501, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/1576/N1", "atom2_id": "///A/1590/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3225, "atom1_serNum": 32202, "atom2_serNum": 32500, "donAcc_type": "standard", "distance": 2.749, "atom1_id": "///A/1576/N2", "atom2_id": "///A/1590/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3226, "atom1_serNum": 32219, "atom2_serNum": 32483, "donAcc_type": "standard", "distance": 2.699, "atom1_id": "///A/1577/O2", "atom2_id": "///A/1589/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3227, "atom1_serNum": 32220, "atom2_serNum": 32481, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///A/1577/N3", "atom2_id": "///A/1589/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3228, "atom1_serNum": 32222, "atom2_serNum": 32480, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///A/1577/N4", "atom2_id": "///A/1589/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3229, "atom1_serNum": 32242, "atom2_serNum": 32423, "donAcc_type": "questionable", "distance": 2.668, "atom1_id": "///A/1578/O6", "atom2_id": "///A/1587/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3230, "atom1_serNum": 32245, "atom2_serNum": 32455, "donAcc_type": "standard", "distance": 2.379, "atom1_id": "///A/1578/N2", "atom2_id": "///A/1588/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3231, "atom1_serNum": 32262, "atom2_serNum": 32436, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///A/1579/N7", "atom2_id": "///A/1587/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3232, "atom1_serNum": 32302, "atom2_serNum": 32324, "donAcc_type": "acceptable", "distance": 2.868, "atom1_id": "///A/1581/O2'", "atom2_id": "///A/1582/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3233, "atom1_serNum": 32302, "atom2_serNum": 32336, "donAcc_type": "acceptable", "distance": 2.807, "atom1_id": "///A/1581/O2'", "atom2_id": "///A/1583/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3234, "atom1_serNum": 32324, "atom2_serNum": 32336, "donAcc_type": "acceptable", "distance": 2.396, "atom1_id": "///A/1582/O2'", "atom2_id": "///A/1583/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3235, "atom1_serNum": 32324, "atom2_serNum": 32359, "donAcc_type": "acceptable", "distance": 2.884, "atom1_id": "///A/1582/O2'", "atom2_id": "///A/1584/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3236, "atom1_serNum": 32331, "atom2_serNum": 32390, "donAcc_type": "questionable", "distance": 2.816, "atom1_id": "///A/1582/O4", "atom2_id": "///A/1585/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3237, "atom1_serNum": 32331, "atom2_serNum": 32418, "donAcc_type": "standard", "distance": 2.565, "atom1_id": "///A/1582/O4", "atom2_id": "///A/1586/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3238, "atom1_serNum": 32344, "atom2_serNum": 32359, "donAcc_type": "acceptable", "distance": 2.804, "atom1_id": "///A/1583/O2'", "atom2_id": "///A/1584/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3239, "atom1_serNum": 32366, "atom2_serNum": 32370, "donAcc_type": "acceptable", "distance": 3.042, "atom1_id": "///A/1584/O2'", "atom2_id": "///A/1584/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3240, "atom1_serNum": 32366, "atom2_serNum": 32377, "donAcc_type": "acceptable", "distance": 2.693, "atom1_id": "///A/1584/O2'", "atom2_id": "///A/1585/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3241, "atom1_serNum": 32390, "atom2_serNum": 32419, "donAcc_type": "questionable", "distance": 2.925, "atom1_id": "///A/1585/N7", "atom2_id": "///A/1586/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3242, "atom1_serNum": 32408, "atom2_serNum": 32427, "donAcc_type": "acceptable", "distance": 2.274, "atom1_id": "///A/1586/O2'", "atom2_id": "///A/1587/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3243, "atom1_serNum": 32431, "atom2_serNum": 32444, "donAcc_type": "acceptable", "distance": 2.625, "atom1_id": "///A/1587/O2'", "atom2_id": "///A/1588/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3244, "atom1_serNum": 32431, "atom2_serNum": 32447, "donAcc_type": "acceptable", "distance": 2.807, "atom1_id": "///A/1587/O2'", "atom2_id": "///A/1588/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3245, "atom1_serNum": 32443, "atom2_serNum": 32477, "donAcc_type": "questionable", "distance": 2.927, "atom1_id": "///A/1588/OP2", "atom2_id": "///A/1589/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3246, "atom1_serNum": 32473, "atom2_serNum": 32492, "donAcc_type": "acceptable", "distance": 3.006, "atom1_id": "///A/1589/O2'", "atom2_id": "///A/1590/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3247, "atom1_serNum": 32606, "atom2_serNum": 32617, "donAcc_type": "acceptable", "distance": 2.565, "atom1_id": "///A/1595/O2'", "atom2_id": "///A/1596/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3248, "atom1_serNum": 32606, "atom2_serNum": 32619, "donAcc_type": "acceptable", "distance": 2.574, "atom1_id": "///A/1595/O2'", "atom2_id": "///A/1596/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3249, "atom1_serNum": 32646, "atom2_serNum": 36352, "donAcc_type": "acceptable", "distance": 3.637, "atom1_id": "///A/1597/O2'", "atom2_id": "///A/1769/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3250, "atom1_serNum": 32657, "atom2_serNum": 36235, "donAcc_type": "acceptable", "distance": 2.638, "atom1_id": "///A/1598/OP1", "atom2_id": "///A/1764/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3251, "atom1_serNum": 32677, "atom2_serNum": 36222, "donAcc_type": "standard", "distance": 3.878, "atom1_id": "///A/1599/OP1", "atom2_id": "///A/1763/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3252, "atom1_serNum": 32698, "atom2_serNum": 32716, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///A/1600/OP2", "atom2_id": "///A/1600/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3253, "atom1_serNum": 32706, "atom2_serNum": 32725, "donAcc_type": "acceptable", "distance": 2.639, "atom1_id": "///A/1600/O2'", "atom2_id": "///A/1601/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3254, "atom1_serNum": 32756, "atom2_serNum": 34413, "donAcc_type": "standard", "distance": 3.045, "atom1_id": "///A/1602/N3", "atom2_id": "///A/1679/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3255, "atom1_serNum": 32771, "atom2_serNum": 32787, "donAcc_type": "acceptable", "distance": 3.184, "atom1_id": "///A/1603/O2'", "atom2_id": "///A/1604/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3256, "atom1_serNum": 32803, "atom2_serNum": 32831, "donAcc_type": "acceptable", "distance": 2.480, "atom1_id": "///A/1605/OP2", "atom2_id": "///A/1606/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3257, "atom1_serNum": 32857, "atom2_serNum": 32902, "donAcc_type": "standard", "distance": 3.106, "atom1_id": "///A/1607/O2", "atom2_id": "///A/1609/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3258, "atom1_serNum": 32958, "atom2_serNum": 32974, "donAcc_type": "acceptable", "distance": 2.870, "atom1_id": "///A/1612/O2'", "atom2_id": "///A/1613/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3259, "atom1_serNum": 32978, "atom2_serNum": 32990, "donAcc_type": "acceptable", "distance": 2.501, "atom1_id": "///A/1613/O2'", "atom2_id": "///A/1614/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3260, "atom1_serNum": 32978, "atom2_serNum": 33024, "donAcc_type": "acceptable", "distance": 2.984, "atom1_id": "///A/1613/O2'", "atom2_id": "///A/1615/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3261, "atom1_serNum": 32982, "atom2_serNum": 32998, "donAcc_type": "acceptable", "distance": 3.397, "atom1_id": "///A/1613/O2", "atom2_id": "///A/1614/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3262, "atom1_serNum": 32982, "atom2_serNum": 33052, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///A/1613/O2", "atom2_id": "///A/1616/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3263, "atom1_serNum": 32983, "atom2_serNum": 33050, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///A/1613/N3", "atom2_id": "///A/1616/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3264, "atom1_serNum": 32985, "atom2_serNum": 33049, "donAcc_type": "standard", "distance": 2.991, "atom1_id": "///A/1613/N4", "atom2_id": "///A/1616/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3265, "atom1_serNum": 32989, "atom2_serNum": 61450, "donAcc_type": "standard", "distance": 2.532, "atom1_id": "///A/1614/OP1", "atom2_id": "///C/210/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3266, "atom1_serNum": 32989, "atom2_serNum": 61451, "donAcc_type": "standard", "distance": 2.661, "atom1_id": "///A/1614/OP1", "atom2_id": "///C/210/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3267, "atom1_serNum": 32998, "atom2_serNum": 33052, "donAcc_type": "acceptable", "distance": 3.289, "atom1_id": "///A/1614/O2'", "atom2_id": "///A/1616/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3268, "atom1_serNum": 33011, "atom2_serNum": 60347, "donAcc_type": "standard", "distance": 2.669, "atom1_id": "///A/1615/OP1", "atom2_id": "///C/60/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3269, "atom1_serNum": 33012, "atom2_serNum": 60535, "donAcc_type": "acceptable", "distance": 2.730, "atom1_id": "///A/1615/OP2", "atom2_id": "///C/83/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3270, "atom1_serNum": 33020, "atom2_serNum": 33030, "donAcc_type": "acceptable", "distance": 3.100, "atom1_id": "///A/1615/O2'", "atom2_id": "///A/1615/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3271, "atom1_serNum": 33020, "atom2_serNum": 60382, "donAcc_type": "acceptable", "distance": 3.302, "atom1_id": "///A/1615/O2'", "atom2_id": "///C/63/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3272, "atom1_serNum": 33033, "atom2_serNum": 60351, "donAcc_type": "standard", "distance": 3.227, "atom1_id": "///A/1616/OP1", "atom2_id": "///C/61/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3273, "atom1_serNum": 33033, "atom2_serNum": 60381, "donAcc_type": "standard", "distance": 3.173, "atom1_id": "///A/1616/OP1", "atom2_id": "///C/63/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3274, "atom1_serNum": 33034, "atom2_serNum": 60382, "donAcc_type": "standard", "distance": 2.679, "atom1_id": "///A/1616/OP2", "atom2_id": "///C/63/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3275, "atom1_serNum": 33061, "atom2_serNum": 60339, "donAcc_type": "standard", "distance": 3.366, "atom1_id": "///A/1617/O4'", "atom2_id": "///C/59/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3276, "atom1_serNum": 33063, "atom2_serNum": 60359, "donAcc_type": "standard", "distance": 3.091, "atom1_id": "///A/1617/O3'", "atom2_id": "///C/61/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3277, "atom1_serNum": 33196, "atom2_serNum": 33209, "donAcc_type": "acceptable", "distance": 2.731, "atom1_id": "///A/1623/O2'", "atom2_id": "///A/1624/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3278, "atom1_serNum": 33216, "atom2_serNum": 33232, "donAcc_type": "acceptable", "distance": 3.239, "atom1_id": "///A/1624/O2'", "atom2_id": "///A/1625/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3279, "atom1_serNum": 33432, "atom2_serNum": 33448, "donAcc_type": "acceptable", "distance": 3.122, "atom1_id": "///A/1634/O2'", "atom2_id": "///A/1635/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3280, "atom1_serNum": 33599, "atom2_serNum": 72678, "donAcc_type": "standard", "distance": 3.613, "atom1_id": "///A/1642/OP1", "atom2_id": "///O/40/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3281, "atom1_serNum": 33642, "atom2_serNum": 72638, "donAcc_type": "standard", "distance": 3.066, "atom1_id": "///A/1644/OP1", "atom2_id": "///O/36/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3282, "atom1_serNum": 33662, "atom2_serNum": 72970, "donAcc_type": "standard", "distance": 2.580, "atom1_id": "///A/1645/OP1", "atom2_id": "///O/77/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3283, "atom1_serNum": 33663, "atom2_serNum": 72970, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///A/1645/OP2", "atom2_id": "///O/77/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3284, "atom1_serNum": 33683, "atom2_serNum": 72811, "donAcc_type": "standard", "distance": 2.657, "atom1_id": "///A/1646/OP2", "atom2_id": "///O/58/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3285, "atom1_serNum": 33756, "atom2_serNum": 33890, "donAcc_type": "acceptable", "distance": 2.960, "atom1_id": "///A/1649/O2'", "atom2_id": "///A/1655/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3286, "atom1_serNum": 33776, "atom2_serNum": 33849, "donAcc_type": "acceptable", "distance": 3.829, "atom1_id": "///A/1650/O2'", "atom2_id": "///A/1653/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3287, "atom1_serNum": 33780, "atom2_serNum": 33883, "donAcc_type": "acceptable", "distance": 3.714, "atom1_id": "///A/1650/O2", "atom2_id": "///A/1655/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3288, "atom1_serNum": 33819, "atom2_serNum": 33831, "donAcc_type": "acceptable", "distance": 2.801, "atom1_id": "///A/1652/O2'", "atom2_id": "///A/1653/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3289, "atom1_serNum": 33826, "atom2_serNum": 34132, "donAcc_type": "standard", "distance": 2.715, "atom1_id": "///A/1652/N4", "atom2_id": "///A/1667/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3290, "atom1_serNum": 33839, "atom2_serNum": 33875, "donAcc_type": "acceptable", "distance": 2.691, "atom1_id": "///A/1653/O2'", "atom2_id": "///A/1655/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3291, "atom1_serNum": 33843, "atom2_serNum": 34125, "donAcc_type": "standard", "distance": 3.110, "atom1_id": "///A/1653/N7", "atom2_id": "///A/1666/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3292, "atom1_serNum": 33846, "atom2_serNum": 34124, "donAcc_type": "standard", "distance": 3.037, "atom1_id": "///A/1653/N6", "atom2_id": "///A/1666/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3293, "atom1_serNum": 33883, "atom2_serNum": 33898, "donAcc_type": "acceptable", "distance": 3.107, "atom1_id": "///A/1655/O2'", "atom2_id": "///A/1656/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3294, "atom1_serNum": 33905, "atom2_serNum": 33917, "donAcc_type": "acceptable", "distance": 2.745, "atom1_id": "///A/1656/O2'", "atom2_id": "///A/1657/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3295, "atom1_serNum": 33905, "atom2_serNum": 33918, "donAcc_type": "acceptable", "distance": 3.178, "atom1_id": "///A/1656/O2'", "atom2_id": "///A/1657/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3296, "atom1_serNum": 33909, "atom2_serNum": 34107, "donAcc_type": "standard", "distance": 2.811, "atom1_id": "///A/1656/O2", "atom2_id": "///A/1665/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3297, "atom1_serNum": 33910, "atom2_serNum": 34105, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///A/1656/N3", "atom2_id": "///A/1665/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3298, "atom1_serNum": 33912, "atom2_serNum": 34104, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///A/1656/N4", "atom2_id": "///A/1665/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3299, "atom1_serNum": 33929, "atom2_serNum": 34084, "donAcc_type": "standard", "distance": 2.759, "atom1_id": "///A/1657/O2", "atom2_id": "///A/1664/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3300, "atom1_serNum": 33930, "atom2_serNum": 34082, "donAcc_type": "standard", "distance": 2.850, "atom1_id": "///A/1657/N3", "atom2_id": "///A/1664/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3301, "atom1_serNum": 33932, "atom2_serNum": 34081, "donAcc_type": "standard", "distance": 2.870, "atom1_id": "///A/1657/N4", "atom2_id": "///A/1664/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3302, "atom1_serNum": 33952, "atom2_serNum": 34032, "donAcc_type": "acceptable", "distance": 3.209, "atom1_id": "///A/1658/O6", "atom2_id": "///A/1662/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3303, "atom1_serNum": 33953, "atom2_serNum": 34032, "donAcc_type": "acceptable", "distance": 3.172, "atom1_id": "///A/1658/N1", "atom2_id": "///A/1662/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3304, "atom1_serNum": 33961, "atom2_serNum": 34039, "donAcc_type": "standard", "distance": 3.506, "atom1_id": "///A/1659/O5'", "atom2_id": "///A/1662/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3305, "atom1_serNum": 33975, "atom2_serNum": 72208, "donAcc_type": "standard", "distance": 2.674, "atom1_id": "///A/1659/N6", "atom2_id": "///N/92/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3306, "atom1_serNum": 33982, "atom2_serNum": 34039, "donAcc_type": "standard", "distance": 2.777, "atom1_id": "///A/1660/OP2", "atom2_id": "///A/1662/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3307, "atom1_serNum": 33990, "atom2_serNum": 34003, "donAcc_type": "acceptable", "distance": 2.850, "atom1_id": "///A/1660/O2'", "atom2_id": "///A/1661/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3308, "atom1_serNum": 34052, "atom2_serNum": 34062, "donAcc_type": "acceptable", "distance": 2.751, "atom1_id": "///A/1663/O2'", "atom2_id": "///A/1663/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3309, "atom1_serNum": 34074, "atom2_serNum": 75521, "donAcc_type": "acceptable", "distance": 3.360, "atom1_id": "///A/1664/O2'", "atom2_id": "///U/1/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3310, "atom1_serNum": 34093, "atom2_serNum": 75521, "donAcc_type": "standard", "distance": 2.946, "atom1_id": "///A/1665/O4'", "atom2_id": "///U/1/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3311, "atom1_serNum": 34258, "atom2_serNum": 34520, "donAcc_type": "standard", "distance": 2.851, "atom1_id": "///A/1672/N6", "atom2_id": "///A/1684/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3312, "atom1_serNum": 34259, "atom2_serNum": 34518, "donAcc_type": "standard", "distance": 2.982, "atom1_id": "///A/1672/N1", "atom2_id": "///A/1684/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3313, "atom1_serNum": 34280, "atom2_serNum": 34500, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///A/1673/O6", "atom2_id": "///A/1683/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3314, "atom1_serNum": 34281, "atom2_serNum": 34498, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///A/1673/N1", "atom2_id": "///A/1683/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3315, "atom1_serNum": 34283, "atom2_serNum": 34497, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///A/1673/N2", "atom2_id": "///A/1683/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3316, "atom1_serNum": 34296, "atom2_serNum": 53251, "donAcc_type": "acceptable", "distance": 2.976, "atom1_id": "///A/1674/O2'", "atom2_id": "///A/2727/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3317, "atom1_serNum": 34303, "atom2_serNum": 34480, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///A/1674/O6", "atom2_id": "///A/1682/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3318, "atom1_serNum": 34304, "atom2_serNum": 34478, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///A/1674/N1", "atom2_id": "///A/1682/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3319, "atom1_serNum": 34306, "atom2_serNum": 34477, "donAcc_type": "standard", "distance": 2.804, "atom1_id": "///A/1674/N2", "atom2_id": "///A/1682/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3320, "atom1_serNum": 34306, "atom2_serNum": 53237, "donAcc_type": "acceptable", "distance": 3.635, "atom1_id": "///A/1674/N2", "atom2_id": "///A/2726/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3321, "atom1_serNum": 34326, "atom2_serNum": 34460, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///A/1675/N6", "atom2_id": "///A/1681/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3322, "atom1_serNum": 34327, "atom2_serNum": 34458, "donAcc_type": "standard", "distance": 2.940, "atom1_id": "///A/1675/N1", "atom2_id": "///A/1681/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3323, "atom1_serNum": 34341, "atom2_serNum": 34368, "donAcc_type": "acceptable", "distance": 3.654, "atom1_id": "///A/1676/O2'", "atom2_id": "///A/1677/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3324, "atom1_serNum": 34351, "atom2_serNum": 34401, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///A/1676/N2", "atom2_id": "///A/1679/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3325, "atom1_serNum": 34352, "atom2_serNum": 34438, "donAcc_type": "standard", "distance": 3.508, "atom1_id": "///A/1676/N3", "atom2_id": "///A/1680/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3326, "atom1_serNum": 34390, "atom2_serNum": 34438, "donAcc_type": "standard", "distance": 2.699, "atom1_id": "///A/1678/N7", "atom2_id": "///A/1680/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3327, "atom1_serNum": 34441, "atom2_serNum": 36798, "donAcc_type": "acceptable", "distance": 3.779, "atom1_id": "///A/1680/N3", "atom2_id": "///A/1790/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3328, "atom1_serNum": 34453, "atom2_serNum": 36776, "donAcc_type": "acceptable", "distance": 2.588, "atom1_id": "///A/1681/O2'", "atom2_id": "///A/1789/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3329, "atom1_serNum": 34453, "atom2_serNum": 36786, "donAcc_type": "acceptable", "distance": 3.387, "atom1_id": "///A/1681/O2'", "atom2_id": "///A/1789/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3330, "atom1_serNum": 34484, "atom2_serNum": 53516, "donAcc_type": "acceptable", "distance": 3.102, "atom1_id": "///A/1683/OP1", "atom2_id": "///A/2739/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3331, "atom1_serNum": 34489, "atom2_serNum": 53247, "donAcc_type": "standard", "distance": 3.951, "atom1_id": "///A/1683/O4'", "atom2_id": "///A/2726/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3332, "atom1_serNum": 34491, "atom2_serNum": 53503, "donAcc_type": "standard", "distance": 3.680, "atom1_id": "///A/1683/O3'", "atom2_id": "///A/2738/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3333, "atom1_serNum": 34493, "atom2_serNum": 53260, "donAcc_type": "acceptable", "distance": 2.602, "atom1_id": "///A/1683/O2'", "atom2_id": "///A/2727/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3334, "atom1_serNum": 34493, "atom2_serNum": 53276, "donAcc_type": "acceptable", "distance": 3.675, "atom1_id": "///A/1683/O2'", "atom2_id": "///A/2728/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3335, "atom1_serNum": 34497, "atom2_serNum": 53260, "donAcc_type": "acceptable", "distance": 3.267, "atom1_id": "///A/1683/O2", "atom2_id": "///A/2727/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3336, "atom1_serNum": 34666, "atom2_serNum": 34679, "donAcc_type": "acceptable", "distance": 2.590, "atom1_id": "///A/1691/O2'", "atom2_id": "///A/1692/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3337, "atom1_serNum": 34712, "atom2_serNum": 40073, "donAcc_type": "standard", "distance": 2.788, "atom1_id": "///A/1693/O2", "atom2_id": "///A/2038/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3338, "atom1_serNum": 34713, "atom2_serNum": 40071, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///A/1693/N3", "atom2_id": "///A/2038/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3339, "atom1_serNum": 34715, "atom2_serNum": 40070, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///A/1693/N4", "atom2_id": "///A/2038/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3340, "atom1_serNum": 34728, "atom2_serNum": 68915, "donAcc_type": "acceptable", "distance": 2.351, "atom1_id": "///A/1694/O2'", "atom2_id": "///J/110/OD2", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3341, "atom1_serNum": 34735, "atom2_serNum": 40050, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///A/1694/O6", "atom2_id": "///A/2037/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3342, "atom1_serNum": 34736, "atom2_serNum": 40048, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///A/1694/N1", "atom2_id": "///A/2037/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3343, "atom1_serNum": 34738, "atom2_serNum": 40047, "donAcc_type": "standard", "distance": 2.750, "atom1_id": "///A/1694/N2", "atom2_id": "///A/2037/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3344, "atom1_serNum": 34738, "atom2_serNum": 68911, "donAcc_type": "standard", "distance": 3.583, "atom1_id": "///A/1694/N2", "atom2_id": "///J/110/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3345, "atom1_serNum": 34758, "atom2_serNum": 40030, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///A/1695/N6", "atom2_id": "///A/2036/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3346, "atom1_serNum": 34759, "atom2_serNum": 40028, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///A/1695/N1", "atom2_id": "///A/2036/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3347, "atom1_serNum": 34764, "atom2_serNum": 68311, "donAcc_type": "acceptable", "distance": 3.578, "atom1_id": "///A/1696/OP1", "atom2_id": "///J/33/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3348, "atom1_serNum": 34764, "atom2_serNum": 68327, "donAcc_type": "acceptable", "distance": 2.554, "atom1_id": "///A/1696/OP1", "atom2_id": "///J/35/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3349, "atom1_serNum": 34773, "atom2_serNum": 34788, "donAcc_type": "acceptable", "distance": 2.672, "atom1_id": "///A/1696/O2'", "atom2_id": "///A/1697/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3350, "atom1_serNum": 34773, "atom2_serNum": 34789, "donAcc_type": "acceptable", "distance": 2.664, "atom1_id": "///A/1696/O2'", "atom2_id": "///A/1697/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3351, "atom1_serNum": 34780, "atom2_serNum": 40010, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/1696/O6", "atom2_id": "///A/2035/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3352, "atom1_serNum": 34781, "atom2_serNum": 40008, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///A/1696/N1", "atom2_id": "///A/2035/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3353, "atom1_serNum": 34783, "atom2_serNum": 40007, "donAcc_type": "standard", "distance": 2.791, "atom1_id": "///A/1696/N2", "atom2_id": "///A/2035/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3354, "atom1_serNum": 34794, "atom2_serNum": 55834, "donAcc_type": "standard", "distance": 3.297, "atom1_id": "///A/1697/O3'", "atom2_id": "///A/2847/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3355, "atom1_serNum": 34809, "atom2_serNum": 55832, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///A/1698/OP1", "atom2_id": "///A/2847/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3356, "atom1_serNum": 34809, "atom2_serNum": 55834, "donAcc_type": "standard", "distance": 3.250, "atom1_id": "///A/1698/OP1", "atom2_id": "///A/2847/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3357, "atom1_serNum": 34825, "atom2_serNum": 68098, "donAcc_type": "standard", "distance": 3.281, "atom1_id": "///A/1698/O6", "atom2_id": "///J/7/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3358, "atom1_serNum": 34841, "atom2_serNum": 62735, "donAcc_type": "acceptable", "distance": 2.685, "atom1_id": "///A/1699/O2'", "atom2_id": "///D/119/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3359, "atom1_serNum": 34848, "atom2_serNum": 39999, "donAcc_type": "standard", "distance": 3.190, "atom1_id": "///A/1699/N6", "atom2_id": "///A/2035/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3360, "atom1_serNum": 34855, "atom2_serNum": 34892, "donAcc_type": "standard", "distance": 3.520, "atom1_id": "///A/1700/OP2", "atom2_id": "///A/1701/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3361, "atom1_serNum": 34870, "atom2_serNum": 39981, "donAcc_type": "acceptable", "distance": 3.156, "atom1_id": "///A/1700/N6", "atom2_id": "///A/2034/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3362, "atom1_serNum": 34870, "atom2_serNum": 39991, "donAcc_type": "standard", "distance": 3.054, "atom1_id": "///A/1700/N6", "atom2_id": "///A/2034/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3363, "atom1_serNum": 34889, "atom2_serNum": 39968, "donAcc_type": "standard", "distance": 2.785, "atom1_id": "///A/1701/O2", "atom2_id": "///A/2033/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3364, "atom1_serNum": 34890, "atom2_serNum": 39966, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///A/1701/N3", "atom2_id": "///A/2033/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3365, "atom1_serNum": 34892, "atom2_serNum": 39965, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///A/1701/N4", "atom2_id": "///A/2033/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3366, "atom1_serNum": 34910, "atom2_serNum": 39944, "donAcc_type": "standard", "distance": 3.037, "atom1_id": "///A/1702/N3", "atom2_id": "///A/2032/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3367, "atom1_serNum": 34912, "atom2_serNum": 39943, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///A/1702/O4", "atom2_id": "///A/2032/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3368, "atom1_serNum": 34929, "atom2_serNum": 39923, "donAcc_type": "standard", "distance": 2.782, "atom1_id": "///A/1703/O2", "atom2_id": "///A/2031/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3369, "atom1_serNum": 34930, "atom2_serNum": 39921, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///A/1703/N3", "atom2_id": "///A/2031/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3370, "atom1_serNum": 34932, "atom2_serNum": 39920, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///A/1703/N4", "atom2_id": "///A/2031/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3371, "atom1_serNum": 34950, "atom2_serNum": 39899, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///A/1704/N3", "atom2_id": "///A/2030/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3372, "atom1_serNum": 34952, "atom2_serNum": 39898, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///A/1704/O4", "atom2_id": "///A/2030/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3373, "atom1_serNum": 34969, "atom2_serNum": 39878, "donAcc_type": "standard", "distance": 2.794, "atom1_id": "///A/1705/O2", "atom2_id": "///A/2029/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3374, "atom1_serNum": 34970, "atom2_serNum": 39876, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///A/1705/N3", "atom2_id": "///A/2029/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3375, "atom1_serNum": 34972, "atom2_serNum": 39875, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///A/1705/N4", "atom2_id": "///A/2029/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3376, "atom1_serNum": 34992, "atom2_serNum": 39855, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///A/1706/O6", "atom2_id": "///A/2028/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3377, "atom1_serNum": 34993, "atom2_serNum": 39853, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///A/1706/N1", "atom2_id": "///A/2028/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3378, "atom1_serNum": 34995, "atom2_serNum": 39852, "donAcc_type": "standard", "distance": 2.801, "atom1_id": "///A/1706/N2", "atom2_id": "///A/2028/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3379, "atom1_serNum": 34995, "atom2_serNum": 53038, "donAcc_type": "standard", "distance": 2.386, "atom1_id": "///A/1706/N2", "atom2_id": "///A/2717/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3380, "atom1_serNum": 35008, "atom2_serNum": 53018, "donAcc_type": "acceptable", "distance": 3.372, "atom1_id": "///A/1707/O2'", "atom2_id": "///A/2716/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3381, "atom1_serNum": 35013, "atom2_serNum": 39834, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///A/1707/N3", "atom2_id": "///A/2027/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3382, "atom1_serNum": 35015, "atom2_serNum": 39833, "donAcc_type": "standard", "distance": 2.971, "atom1_id": "///A/1707/O4", "atom2_id": "///A/2027/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3383, "atom1_serNum": 35028, "atom2_serNum": 35041, "donAcc_type": "acceptable", "distance": 2.720, "atom1_id": "///A/1708/O2'", "atom2_id": "///A/1709/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3384, "atom1_serNum": 35033, "atom2_serNum": 39812, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///A/1708/N3", "atom2_id": "///A/2026/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3385, "atom1_serNum": 35035, "atom2_serNum": 39811, "donAcc_type": "standard", "distance": 3.016, "atom1_id": "///A/1708/O4", "atom2_id": "///A/2026/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3386, "atom1_serNum": 35055, "atom2_serNum": 39789, "donAcc_type": "standard", "distance": 3.361, "atom1_id": "///A/1709/N6", "atom2_id": "///A/2025/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3387, "atom1_serNum": 35055, "atom2_serNum": 39791, "donAcc_type": "questionable", "distance": 3.084, "atom1_id": "///A/1709/N6", "atom2_id": "///A/2025/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3388, "atom1_serNum": 35077, "atom2_serNum": 39771, "donAcc_type": "standard", "distance": 2.985, "atom1_id": "///A/1710/N6", "atom2_id": "///A/2024/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3389, "atom1_serNum": 35078, "atom2_serNum": 39769, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///A/1710/N1", "atom2_id": "///A/2024/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3390, "atom1_serNum": 35083, "atom2_serNum": 66890, "donAcc_type": "standard", "distance": 3.194, "atom1_id": "///A/1711/OP1", "atom2_id": "///H/82/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3391, "atom1_serNum": 35092, "atom2_serNum": 66356, "donAcc_type": "acceptable", "distance": 2.334, "atom1_id": "///A/1711/O2'", "atom2_id": "///H/6/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3392, "atom1_serNum": 35099, "atom2_serNum": 39751, "donAcc_type": "standard", "distance": 2.964, "atom1_id": "///A/1711/O6", "atom2_id": "///A/2023/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3393, "atom1_serNum": 35100, "atom2_serNum": 39749, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///A/1711/N1", "atom2_id": "///A/2023/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3394, "atom1_serNum": 35102, "atom2_serNum": 39748, "donAcc_type": "standard", "distance": 2.861, "atom1_id": "///A/1711/N2", "atom2_id": "///A/2023/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3395, "atom1_serNum": 35115, "atom2_serNum": 35164, "donAcc_type": "acceptable", "distance": 2.720, "atom1_id": "///A/1712/O2'", "atom2_id": "///A/1714/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3396, "atom1_serNum": 35115, "atom2_serNum": 35167, "donAcc_type": "acceptable", "distance": 3.317, "atom1_id": "///A/1712/O2'", "atom2_id": "///A/1714/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3397, "atom1_serNum": 35138, "atom2_serNum": 35189, "donAcc_type": "acceptable", "distance": 3.348, "atom1_id": "///A/1713/O2'", "atom2_id": "///A/1715/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3398, "atom1_serNum": 35138, "atom2_serNum": 35269, "donAcc_type": "acceptable", "distance": 2.813, "atom1_id": "///A/1713/O2'", "atom2_id": "///A/1719/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3399, "atom1_serNum": 35142, "atom2_serNum": 39686, "donAcc_type": "standard", "distance": 3.054, "atom1_id": "///A/1713/N7", "atom2_id": "///A/2020/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3400, "atom1_serNum": 35145, "atom2_serNum": 35316, "donAcc_type": "standard", "distance": 3.764, "atom1_id": "///A/1713/N6", "atom2_id": "///A/1721/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3401, "atom1_serNum": 35145, "atom2_serNum": 39685, "donAcc_type": "standard", "distance": 2.791, "atom1_id": "///A/1713/N6", "atom2_id": "///A/2020/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3402, "atom1_serNum": 35146, "atom2_serNum": 35295, "donAcc_type": "standard", "distance": 3.683, "atom1_id": "///A/1713/N1", "atom2_id": "///A/1720/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3403, "atom1_serNum": 35148, "atom2_serNum": 35189, "donAcc_type": "standard", "distance": 2.838, "atom1_id": "///A/1713/N3", "atom2_id": "///A/1715/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3404, "atom1_serNum": 35152, "atom2_serNum": 50380, "donAcc_type": "questionable", "distance": 3.224, "atom1_id": "///A/1714/OP2", "atom2_id": "///A/2579/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3405, "atom1_serNum": 35160, "atom2_serNum": 50357, "donAcc_type": "acceptable", "distance": 3.217, "atom1_id": "///A/1714/O2'", "atom2_id": "///A/2578/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3406, "atom1_serNum": 35160, "atom2_serNum": 66340, "donAcc_type": "acceptable", "distance": 3.619, "atom1_id": "///A/1714/O2'", "atom2_id": "///H/4/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3407, "atom1_serNum": 35167, "atom2_serNum": 39731, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///A/1714/N6", "atom2_id": "///A/2022/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3408, "atom1_serNum": 35168, "atom2_serNum": 39729, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///A/1714/N1", "atom2_id": "///A/2022/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3409, "atom1_serNum": 35173, "atom2_serNum": 50381, "donAcc_type": "questionable", "distance": 2.924, "atom1_id": "///A/1715/OP1", "atom2_id": "///A/2579/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3410, "atom1_serNum": 35174, "atom2_serNum": 50380, "donAcc_type": "questionable", "distance": 2.760, "atom1_id": "///A/1715/OP2", "atom2_id": "///A/2579/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3411, "atom1_serNum": 35186, "atom2_serNum": 62858, "donAcc_type": "standard", "distance": 3.322, "atom1_id": "///A/1715/O2", "atom2_id": "///D/135/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3412, "atom1_serNum": 35202, "atom2_serNum": 35246, "donAcc_type": "acceptable", "distance": 2.884, "atom1_id": "///A/1716/O2'", "atom2_id": "///A/1718/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3413, "atom1_serNum": 35207, "atom2_serNum": 35257, "donAcc_type": "standard", "distance": 2.697, "atom1_id": "///A/1716/N3", "atom2_id": "///A/1719/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3414, "atom1_serNum": 35209, "atom2_serNum": 50380, "donAcc_type": "questionable", "distance": 3.202, "atom1_id": "///A/1716/O4", "atom2_id": "///A/2579/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3415, "atom1_serNum": 35272, "atom2_serNum": 39668, "donAcc_type": "standard", "distance": 3.321, "atom1_id": "///A/1719/O6", "atom2_id": "///A/2019/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3416, "atom1_serNum": 35273, "atom2_serNum": 39666, "donAcc_type": "standard", "distance": 3.348, "atom1_id": "///A/1719/N1", "atom2_id": "///A/2019/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3417, "atom1_serNum": 35275, "atom2_serNum": 35338, "donAcc_type": "standard", "distance": 3.124, "atom1_id": "///A/1719/N2", "atom2_id": "///A/1722/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3418, "atom1_serNum": 35275, "atom2_serNum": 39665, "donAcc_type": "standard", "distance": 3.318, "atom1_id": "///A/1719/N2", "atom2_id": "///A/2019/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3419, "atom1_serNum": 35276, "atom2_serNum": 35315, "donAcc_type": "standard", "distance": 3.522, "atom1_id": "///A/1719/N3", "atom2_id": "///A/1721/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3420, "atom1_serNum": 35292, "atom2_serNum": 62848, "donAcc_type": "acceptable", "distance": 3.062, "atom1_id": "///A/1720/O2", "atom2_id": "///D/134/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3421, "atom1_serNum": 35293, "atom2_serNum": 62848, "donAcc_type": "acceptable", "distance": 2.850, "atom1_id": "///A/1720/N3", "atom2_id": "///D/134/OG", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3422, "atom1_serNum": 35295, "atom2_serNum": 39720, "donAcc_type": "standard", "distance": 3.508, "atom1_id": "///A/1720/N4", "atom2_id": "///A/2022/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3423, "atom1_serNum": 35352, "atom2_serNum": 39661, "donAcc_type": "acceptable", "distance": 2.843, "atom1_id": "///A/1723/O2'", "atom2_id": "///A/2019/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3424, "atom1_serNum": 35352, "atom2_serNum": 39677, "donAcc_type": "acceptable", "distance": 3.345, "atom1_id": "///A/1723/O2'", "atom2_id": "///A/2020/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3425, "atom1_serNum": 35362, "atom2_serNum": 39661, "donAcc_type": "acceptable", "distance": 3.322, "atom1_id": "///A/1723/N3", "atom2_id": "///A/2019/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3426, "atom1_serNum": 35370, "atom2_serNum": 39661, "donAcc_type": "acceptable", "distance": 3.092, "atom1_id": "///A/1724/O4'", "atom2_id": "///A/2019/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3427, "atom1_serNum": 35396, "atom2_serNum": 36844, "donAcc_type": "acceptable", "distance": 2.883, "atom1_id": "///A/1725/O2'", "atom2_id": "///A/1792/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3428, "atom1_serNum": 35401, "atom2_serNum": 36855, "donAcc_type": "standard", "distance": 3.108, "atom1_id": "///A/1725/N3", "atom2_id": "///A/1793/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3429, "atom1_serNum": 35416, "atom2_serNum": 35430, "donAcc_type": "acceptable", "distance": 2.746, "atom1_id": "///A/1726/O2'", "atom2_id": "///A/1727/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3430, "atom1_serNum": 35416, "atom2_serNum": 36836, "donAcc_type": "acceptable", "distance": 3.314, "atom1_id": "///A/1726/O2'", "atom2_id": "///A/1792/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3431, "atom1_serNum": 35439, "atom2_serNum": 35454, "donAcc_type": "acceptable", "distance": 2.836, "atom1_id": "///A/1727/O2'", "atom2_id": "///A/1728/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3432, "atom1_serNum": 35446, "atom2_serNum": 35965, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///A/1727/N6", "atom2_id": "///A/1751/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3433, "atom1_serNum": 35447, "atom2_serNum": 35963, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///A/1727/N1", "atom2_id": "///A/1751/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3434, "atom1_serNum": 35465, "atom2_serNum": 35945, "donAcc_type": "standard", "distance": 2.736, "atom1_id": "///A/1728/O2", "atom2_id": "///A/1750/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3435, "atom1_serNum": 35466, "atom2_serNum": 35943, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///A/1728/N3", "atom2_id": "///A/1750/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3436, "atom1_serNum": 35468, "atom2_serNum": 35942, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///A/1728/N4", "atom2_id": "///A/1750/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3437, "atom1_serNum": 35485, "atom2_serNum": 35922, "donAcc_type": "standard", "distance": 2.705, "atom1_id": "///A/1729/O2", "atom2_id": "///A/1749/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3438, "atom1_serNum": 35486, "atom2_serNum": 35920, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///A/1729/N3", "atom2_id": "///A/1749/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3439, "atom1_serNum": 35488, "atom2_serNum": 35919, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///A/1729/N4", "atom2_id": "///A/1749/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3440, "atom1_serNum": 35505, "atom2_serNum": 35899, "donAcc_type": "standard", "distance": 2.734, "atom1_id": "///A/1730/O2", "atom2_id": "///A/1748/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3441, "atom1_serNum": 35506, "atom2_serNum": 35897, "donAcc_type": "standard", "distance": 2.865, "atom1_id": "///A/1730/N3", "atom2_id": "///A/1748/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3442, "atom1_serNum": 35508, "atom2_serNum": 35896, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/1730/N4", "atom2_id": "///A/1748/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3443, "atom1_serNum": 35525, "atom2_serNum": 35874, "donAcc_type": "standard", "distance": 2.987, "atom1_id": "///A/1731/O2", "atom2_id": "///A/1747/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3444, "atom1_serNum": 35526, "atom2_serNum": 35873, "donAcc_type": "questionable", "distance": 3.039, "atom1_id": "///A/1731/N3", "atom2_id": "///A/1747/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3445, "atom1_serNum": 35541, "atom2_serNum": 35851, "donAcc_type": "acceptable", "distance": 3.078, "atom1_id": "///A/1732/O2'", "atom2_id": "///A/1746/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3446, "atom1_serNum": 35549, "atom2_serNum": 35813, "donAcc_type": "standard", "distance": 3.447, "atom1_id": "///A/1732/N1", "atom2_id": "///A/1745/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3447, "atom1_serNum": 35551, "atom2_serNum": 35848, "donAcc_type": "standard", "distance": 2.807, "atom1_id": "///A/1732/N2", "atom2_id": "///A/1746/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3448, "atom1_serNum": 35552, "atom2_serNum": 35851, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///A/1732/N3", "atom2_id": "///A/1746/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3449, "atom1_serNum": 35564, "atom2_serNum": 35826, "donAcc_type": "acceptable", "distance": 2.878, "atom1_id": "///A/1733/O2'", "atom2_id": "///A/1745/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3450, "atom1_serNum": 35576, "atom2_serNum": 35784, "donAcc_type": "standard", "distance": 2.735, "atom1_id": "///A/1734/OP2", "atom2_id": "///A/1743/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3451, "atom1_serNum": 35588, "atom2_serNum": 35784, "donAcc_type": "standard", "distance": 3.314, "atom1_id": "///A/1734/N7", "atom2_id": "///A/1743/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3452, "atom1_serNum": 35591, "atom2_serNum": 35781, "donAcc_type": "standard", "distance": 3.254, "atom1_id": "///A/1734/N6", "atom2_id": "///A/1743/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3453, "atom1_serNum": 35610, "atom2_serNum": 35764, "donAcc_type": "standard", "distance": 3.089, "atom1_id": "///A/1735/N7", "atom2_id": "///A/1742/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3454, "atom1_serNum": 35613, "atom2_serNum": 35765, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///A/1735/N6", "atom2_id": "///A/1742/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3455, "atom1_serNum": 35632, "atom2_serNum": 35741, "donAcc_type": "standard", "distance": 2.735, "atom1_id": "///A/1736/O2", "atom2_id": "///A/1741/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3456, "atom1_serNum": 35633, "atom2_serNum": 35739, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///A/1736/N3", "atom2_id": "///A/1741/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3457, "atom1_serNum": 35633, "atom2_serNum": 35764, "donAcc_type": "standard", "distance": 3.153, "atom1_id": "///A/1736/N3", "atom2_id": "///A/1742/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3458, "atom1_serNum": 35635, "atom2_serNum": 35738, "donAcc_type": "standard", "distance": 2.968, "atom1_id": "///A/1736/N4", "atom2_id": "///A/1741/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3459, "atom1_serNum": 35648, "atom2_serNum": 35715, "donAcc_type": "acceptable", "distance": 2.980, "atom1_id": "///A/1737/O2'", "atom2_id": "///A/1740/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3460, "atom1_serNum": 35648, "atom2_serNum": 39381, "donAcc_type": "acceptable", "distance": 3.648, "atom1_id": "///A/1737/O2'", "atom2_id": "///A/2006/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3461, "atom1_serNum": 35652, "atom2_serNum": 35716, "donAcc_type": "standard", "distance": 2.811, "atom1_id": "///A/1737/O2", "atom2_id": "///A/1740/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3462, "atom1_serNum": 35660, "atom2_serNum": 35695, "donAcc_type": "standard", "distance": 3.025, "atom1_id": "///A/1738/OP2", "atom2_id": "///A/1739/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3463, "atom1_serNum": 35668, "atom2_serNum": 35712, "donAcc_type": "acceptable", "distance": 3.374, "atom1_id": "///A/1738/O2'", "atom2_id": "///A/1740/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3464, "atom1_serNum": 35673, "atom2_serNum": 38270, "donAcc_type": "standard", "distance": 3.281, "atom1_id": "///A/1738/N3", "atom2_id": "///A/1858/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3465, "atom1_serNum": 35675, "atom2_serNum": 38269, "donAcc_type": "standard", "distance": 2.999, "atom1_id": "///A/1738/O4", "atom2_id": "///A/1858/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3466, "atom1_serNum": 35708, "atom2_serNum": 59950, "donAcc_type": "acceptable", "distance": 3.664, "atom1_id": "///A/1740/O2'", "atom2_id": "///C/8/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3467, "atom1_serNum": 35708, "atom2_serNum": 59957, "donAcc_type": "acceptable", "distance": 3.180, "atom1_id": "///A/1740/O2'", "atom2_id": "///C/9/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3468, "atom1_serNum": 35741, "atom2_serNum": 39381, "donAcc_type": "acceptable", "distance": 3.380, "atom1_id": "///A/1741/N2", "atom2_id": "///A/2006/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3469, "atom1_serNum": 35746, "atom2_serNum": 35777, "donAcc_type": "acceptable", "distance": 2.692, "atom1_id": "///A/1742/OP2", "atom2_id": "///A/1743/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3470, "atom1_serNum": 35754, "atom2_serNum": 39394, "donAcc_type": "acceptable", "distance": 2.873, "atom1_id": "///A/1742/O2'", "atom2_id": "///A/2007/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3471, "atom1_serNum": 35773, "atom2_serNum": 35818, "donAcc_type": "questionable", "distance": 3.283, "atom1_id": "///A/1743/O4'", "atom2_id": "///A/1745/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3472, "atom1_serNum": 35799, "atom2_serNum": 35815, "donAcc_type": "acceptable", "distance": 3.154, "atom1_id": "///A/1744/O2'", "atom2_id": "///A/1745/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3473, "atom1_serNum": 35822, "atom2_serNum": 36897, "donAcc_type": "acceptable", "distance": 3.680, "atom1_id": "///A/1745/O2'", "atom2_id": "///A/1795/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3474, "atom1_serNum": 35835, "atom2_serNum": 36848, "donAcc_type": "standard", "distance": 3.400, "atom1_id": "///A/1746/OP1", "atom2_id": "///A/1792/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3475, "atom1_serNum": 35935, "atom2_serNum": 35951, "donAcc_type": "acceptable", "distance": 2.608, "atom1_id": "///A/1750/O2'", "atom2_id": "///A/1751/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3476, "atom1_serNum": 35958, "atom2_serNum": 35962, "donAcc_type": "acceptable", "distance": 3.193, "atom1_id": "///A/1751/O2'", "atom2_id": "///A/1751/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3477, "atom1_serNum": 35978, "atom2_serNum": 36739, "donAcc_type": "acceptable", "distance": 3.397, "atom1_id": "///A/1752/O2'", "atom2_id": "///A/1787/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3478, "atom1_serNum": 35985, "atom2_serNum": 36590, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///A/1752/O6", "atom2_id": "///A/1780/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3479, "atom1_serNum": 35986, "atom2_serNum": 36588, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///A/1752/N1", "atom2_id": "///A/1780/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3480, "atom1_serNum": 35988, "atom2_serNum": 36587, "donAcc_type": "standard", "distance": 2.789, "atom1_id": "///A/1752/N2", "atom2_id": "///A/1780/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3481, "atom1_serNum": 36001, "atom2_serNum": 56651, "donAcc_type": "acceptable", "distance": 3.053, "atom1_id": "///A/1753/O2'", "atom2_id": "///A/2885/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3482, "atom1_serNum": 36005, "atom2_serNum": 36570, "donAcc_type": "standard", "distance": 2.735, "atom1_id": "///A/1753/O2", "atom2_id": "///A/1779/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3483, "atom1_serNum": 36006, "atom2_serNum": 36568, "donAcc_type": "standard", "distance": 2.865, "atom1_id": "///A/1753/N3", "atom2_id": "///A/1779/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3484, "atom1_serNum": 36008, "atom2_serNum": 36567, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///A/1753/N4", "atom2_id": "///A/1779/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3485, "atom1_serNum": 36021, "atom2_serNum": 56639, "donAcc_type": "acceptable", "distance": 2.979, "atom1_id": "///A/1754/O2'", "atom2_id": "///A/2884/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3486, "atom1_serNum": 36025, "atom2_serNum": 56638, "donAcc_type": "standard", "distance": 2.680, "atom1_id": "///A/1754/O2", "atom2_id": "///A/2884/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3487, "atom1_serNum": 36026, "atom2_serNum": 36546, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///A/1754/N3", "atom2_id": "///A/1778/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3488, "atom1_serNum": 36028, "atom2_serNum": 36545, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///A/1754/O4", "atom2_id": "///A/1778/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3489, "atom1_serNum": 36045, "atom2_serNum": 36525, "donAcc_type": "standard", "distance": 2.815, "atom1_id": "///A/1755/O2", "atom2_id": "///A/1777/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3490, "atom1_serNum": 36046, "atom2_serNum": 36523, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///A/1755/N3", "atom2_id": "///A/1777/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3491, "atom1_serNum": 36048, "atom2_serNum": 36522, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///A/1755/N4", "atom2_id": "///A/1777/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3492, "atom1_serNum": 36053, "atom2_serNum": 36081, "donAcc_type": "acceptable", "distance": 2.588, "atom1_id": "///A/1756/OP2", "atom2_id": "///A/1757/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3493, "atom1_serNum": 36066, "atom2_serNum": 36501, "donAcc_type": "standard", "distance": 2.797, "atom1_id": "///A/1756/N3", "atom2_id": "///A/1776/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3494, "atom1_serNum": 36068, "atom2_serNum": 36500, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///A/1756/O4", "atom2_id": "///A/1776/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3495, "atom1_serNum": 36072, "atom2_serNum": 36091, "donAcc_type": "standard", "distance": 3.162, "atom1_id": "///A/1757/OP1", "atom2_id": "///A/1757/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3496, "atom1_serNum": 36077, "atom2_serNum": 36120, "donAcc_type": "questionable", "distance": 3.225, "atom1_id": "///A/1757/O4'", "atom2_id": "///A/1759/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3497, "atom1_serNum": 36085, "atom2_serNum": 36477, "donAcc_type": "questionable", "distance": 3.078, "atom1_id": "///A/1757/N7", "atom2_id": "///A/1775/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3498, "atom1_serNum": 36088, "atom2_serNum": 36478, "donAcc_type": "standard", "distance": 2.140, "atom1_id": "///A/1757/O6", "atom2_id": "///A/1775/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3499, "atom1_serNum": 36088, "atom2_serNum": 36480, "donAcc_type": "standard", "distance": 2.815, "atom1_id": "///A/1757/O6", "atom2_id": "///A/1775/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3500, "atom1_serNum": 36104, "atom2_serNum": 36115, "donAcc_type": "acceptable", "distance": 3.039, "atom1_id": "///A/1758/O2'", "atom2_id": "///A/1759/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3501, "atom1_serNum": 36116, "atom2_serNum": 36433, "donAcc_type": "standard", "distance": 3.044, "atom1_id": "///A/1759/OP2", "atom2_id": "///A/1773/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3502, "atom1_serNum": 36128, "atom2_serNum": 36452, "donAcc_type": "questionable", "distance": 2.576, "atom1_id": "///A/1759/O2", "atom2_id": "///A/1774/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3503, "atom1_serNum": 36128, "atom2_serNum": 36455, "donAcc_type": "standard", "distance": 2.988, "atom1_id": "///A/1759/O2", "atom2_id": "///A/1774/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3504, "atom1_serNum": 36129, "atom2_serNum": 36452, "donAcc_type": "standard", "distance": 2.983, "atom1_id": "///A/1759/N3", "atom2_id": "///A/1774/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3505, "atom1_serNum": 36148, "atom2_serNum": 36435, "donAcc_type": "standard", "distance": 2.782, "atom1_id": "///A/1760/N7", "atom2_id": "///A/1773/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3506, "atom1_serNum": 36151, "atom2_serNum": 36425, "donAcc_type": "acceptable", "distance": 3.342, "atom1_id": "///A/1760/N6", "atom2_id": "///A/1773/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3507, "atom1_serNum": 36151, "atom2_serNum": 36436, "donAcc_type": "standard", "distance": 2.992, "atom1_id": "///A/1760/N6", "atom2_id": "///A/1773/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3508, "atom1_serNum": 36173, "atom2_serNum": 36412, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///A/1761/O6", "atom2_id": "///A/1772/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3509, "atom1_serNum": 36174, "atom2_serNum": 36410, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///A/1761/N1", "atom2_id": "///A/1772/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3510, "atom1_serNum": 36176, "atom2_serNum": 36409, "donAcc_type": "standard", "distance": 2.810, "atom1_id": "///A/1761/N2", "atom2_id": "///A/1772/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3511, "atom1_serNum": 36196, "atom2_serNum": 36392, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///A/1762/O6", "atom2_id": "///A/1771/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3512, "atom1_serNum": 36197, "atom2_serNum": 36390, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///A/1762/N1", "atom2_id": "///A/1771/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3513, "atom1_serNum": 36199, "atom2_serNum": 36389, "donAcc_type": "standard", "distance": 2.765, "atom1_id": "///A/1762/N2", "atom2_id": "///A/1771/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3514, "atom1_serNum": 36219, "atom2_serNum": 36372, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///A/1763/O6", "atom2_id": "///A/1770/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3515, "atom1_serNum": 36220, "atom2_serNum": 36370, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///A/1763/N1", "atom2_id": "///A/1770/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3516, "atom1_serNum": 36222, "atom2_serNum": 36369, "donAcc_type": "standard", "distance": 2.760, "atom1_id": "///A/1763/N2", "atom2_id": "///A/1770/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3517, "atom1_serNum": 36239, "atom2_serNum": 36350, "donAcc_type": "standard", "distance": 2.776, "atom1_id": "///A/1764/O2", "atom2_id": "///A/1769/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3518, "atom1_serNum": 36240, "atom2_serNum": 36349, "donAcc_type": "standard", "distance": 3.038, "atom1_id": "///A/1764/N3", "atom2_id": "///A/1769/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3519, "atom1_serNum": 36255, "atom2_serNum": 36302, "donAcc_type": "acceptable", "distance": 3.425, "atom1_id": "///A/1765/O2'", "atom2_id": "///A/1767/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3520, "atom1_serNum": 36265, "atom2_serNum": 36312, "donAcc_type": "standard", "distance": 2.734, "atom1_id": "///A/1765/N2", "atom2_id": "///A/1768/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3521, "atom1_serNum": 36265, "atom2_serNum": 36324, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///A/1765/N2", "atom2_id": "///A/1768/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3522, "atom1_serNum": 36266, "atom2_serNum": 36327, "donAcc_type": "standard", "distance": 3.106, "atom1_id": "///A/1765/N3", "atom2_id": "///A/1768/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3523, "atom1_serNum": 36425, "atom2_serNum": 36444, "donAcc_type": "acceptable", "distance": 3.177, "atom1_id": "///A/1773/O2'", "atom2_id": "///A/1774/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3524, "atom1_serNum": 36448, "atom2_serNum": 36461, "donAcc_type": "acceptable", "distance": 2.714, "atom1_id": "///A/1774/O2'", "atom2_id": "///A/1775/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3525, "atom1_serNum": 36560, "atom2_serNum": 36574, "donAcc_type": "acceptable", "distance": 2.501, "atom1_id": "///A/1779/O2'", "atom2_id": "///A/1780/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3526, "atom1_serNum": 36560, "atom2_serNum": 36576, "donAcc_type": "acceptable", "distance": 2.791, "atom1_id": "///A/1779/O2'", "atom2_id": "///A/1780/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3527, "atom1_serNum": 36560, "atom2_serNum": 56659, "donAcc_type": "acceptable", "distance": 3.074, "atom1_id": "///A/1779/O2'", "atom2_id": "///A/2885/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3528, "atom1_serNum": 36570, "atom2_serNum": 56661, "donAcc_type": "standard", "distance": 3.074, "atom1_id": "///A/1779/N2", "atom2_id": "///A/2885/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3529, "atom1_serNum": 36581, "atom2_serNum": 56673, "donAcc_type": "acceptable", "distance": 3.230, "atom1_id": "///A/1780/O3'", "atom2_id": "///A/2886/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3530, "atom1_serNum": 36594, "atom2_serNum": 56673, "donAcc_type": "acceptable", "distance": 3.439, "atom1_id": "///A/1781/OP1", "atom2_id": "///A/2886/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3531, "atom1_serNum": 36607, "atom2_serNum": 36698, "donAcc_type": "standard", "distance": 2.723, "atom1_id": "///A/1781/O2", "atom2_id": "///A/1785/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3532, "atom1_serNum": 36608, "atom2_serNum": 36696, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///A/1781/N3", "atom2_id": "///A/1785/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3533, "atom1_serNum": 36610, "atom2_serNum": 36695, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///A/1781/N4", "atom2_id": "///A/1785/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3534, "atom1_serNum": 36633, "atom2_serNum": 36684, "donAcc_type": "standard", "distance": 3.350, "atom1_id": "///A/1782/N2", "atom2_id": "///A/1785/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3535, "atom1_serNum": 36637, "atom2_serNum": 69712, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///A/1783/OP1", "atom2_id": "///K/97/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3536, "atom1_serNum": 36651, "atom2_serNum": 53641, "donAcc_type": "acceptable", "distance": 3.029, "atom1_id": "///A/1783/N3", "atom2_id": "///A/2745/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3537, "atom1_serNum": 36653, "atom2_serNum": 53645, "donAcc_type": "standard", "distance": 3.444, "atom1_id": "///A/1783/N4", "atom2_id": "///A/2745/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3538, "atom1_serNum": 36666, "atom2_serNum": 36679, "donAcc_type": "acceptable", "distance": 2.325, "atom1_id": "///A/1784/O2'", "atom2_id": "///A/1785/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3539, "atom1_serNum": 36673, "atom2_serNum": 53174, "donAcc_type": "acceptable", "distance": 3.545, "atom1_id": "///A/1784/N6", "atom2_id": "///A/2723/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3540, "atom1_serNum": 36674, "atom2_serNum": 53184, "donAcc_type": "standard", "distance": 3.518, "atom1_id": "///A/1784/N1", "atom2_id": "///A/2723/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3541, "atom1_serNum": 36750, "atom2_serNum": 53608, "donAcc_type": "standard", "distance": 3.837, "atom1_id": "///A/1788/O4'", "atom2_id": "///A/2743/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3542, "atom1_serNum": 36754, "atom2_serNum": 36769, "donAcc_type": "acceptable", "distance": 2.834, "atom1_id": "///A/1788/O2'", "atom2_id": "///A/1789/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3543, "atom1_serNum": 36754, "atom2_serNum": 53598, "donAcc_type": "acceptable", "distance": 2.959, "atom1_id": "///A/1788/O2'", "atom2_id": "///A/2743/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3544, "atom1_serNum": 36818, "atom2_serNum": 36831, "donAcc_type": "acceptable", "distance": 2.412, "atom1_id": "///A/1791/O2'", "atom2_id": "///A/1792/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3545, "atom1_serNum": 36870, "atom2_serNum": 39626, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///A/1793/O6", "atom2_id": "///A/2017/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3546, "atom1_serNum": 36871, "atom2_serNum": 39624, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///A/1793/N1", "atom2_id": "///A/2017/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3547, "atom1_serNum": 36873, "atom2_serNum": 39623, "donAcc_type": "standard", "distance": 2.685, "atom1_id": "///A/1793/N2", "atom2_id": "///A/2017/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3548, "atom1_serNum": 36890, "atom2_serNum": 39606, "donAcc_type": "standard", "distance": 2.724, "atom1_id": "///A/1794/O2", "atom2_id": "///A/2016/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3549, "atom1_serNum": 36891, "atom2_serNum": 39604, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///A/1794/N3", "atom2_id": "///A/2016/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3550, "atom1_serNum": 36893, "atom2_serNum": 39603, "donAcc_type": "standard", "distance": 2.964, "atom1_id": "///A/1794/N4", "atom2_id": "///A/2016/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3551, "atom1_serNum": 36910, "atom2_serNum": 39583, "donAcc_type": "standard", "distance": 2.729, "atom1_id": "///A/1795/O2", "atom2_id": "///A/2015/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3552, "atom1_serNum": 36911, "atom2_serNum": 39581, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///A/1795/N3", "atom2_id": "///A/2015/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3553, "atom1_serNum": 36913, "atom2_serNum": 39580, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///A/1795/N4", "atom2_id": "///A/2015/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3554, "atom1_serNum": 36930, "atom2_serNum": 39560, "donAcc_type": "standard", "distance": 2.773, "atom1_id": "///A/1796/O2", "atom2_id": "///A/2014/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3555, "atom1_serNum": 36931, "atom2_serNum": 39558, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///A/1796/N3", "atom2_id": "///A/2014/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3556, "atom1_serNum": 36933, "atom2_serNum": 39557, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///A/1796/N4", "atom2_id": "///A/2014/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3557, "atom1_serNum": 36953, "atom2_serNum": 39537, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///A/1797/N6", "atom2_id": "///A/2013/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3558, "atom1_serNum": 36954, "atom2_serNum": 39535, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///A/1797/N1", "atom2_id": "///A/2013/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3559, "atom1_serNum": 36975, "atom2_serNum": 39517, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///A/1798/O6", "atom2_id": "///A/2012/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3560, "atom1_serNum": 36976, "atom2_serNum": 39515, "donAcc_type": "standard", "distance": 2.842, "atom1_id": "///A/1798/N1", "atom2_id": "///A/2012/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3561, "atom1_serNum": 36978, "atom2_serNum": 39514, "donAcc_type": "standard", "distance": 2.669, "atom1_id": "///A/1798/N2", "atom2_id": "///A/2012/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3562, "atom1_serNum": 36998, "atom2_serNum": 39495, "donAcc_type": "standard", "distance": 3.114, "atom1_id": "///A/1799/O6", "atom2_id": "///A/2011/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3563, "atom1_serNum": 36999, "atom2_serNum": 39494, "donAcc_type": "standard", "distance": 2.844, "atom1_id": "///A/1799/N1", "atom2_id": "///A/2011/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3564, "atom1_serNum": 37001, "atom2_serNum": 39494, "donAcc_type": "standard", "distance": 3.044, "atom1_id": "///A/1799/N2", "atom2_id": "///A/2011/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3565, "atom1_serNum": 37014, "atom2_serNum": 37329, "donAcc_type": "acceptable", "distance": 3.044, "atom1_id": "///A/1800/O2'", "atom2_id": "///A/1815/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3566, "atom1_serNum": 37018, "atom2_serNum": 39455, "donAcc_type": "standard", "distance": 2.812, "atom1_id": "///A/1800/O2", "atom2_id": "///A/2009/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3567, "atom1_serNum": 37019, "atom2_serNum": 39453, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///A/1800/N3", "atom2_id": "///A/2009/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3568, "atom1_serNum": 37021, "atom2_serNum": 39452, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///A/1800/N4", "atom2_id": "///A/2009/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3569, "atom1_serNum": 37034, "atom2_serNum": 37070, "donAcc_type": "acceptable", "distance": 3.469, "atom1_id": "///A/1801/O2'", "atom2_id": "///A/1803/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3570, "atom1_serNum": 37038, "atom2_serNum": 39368, "donAcc_type": "standard", "distance": 3.325, "atom1_id": "///A/1801/N7", "atom2_id": "///A/2005/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3571, "atom1_serNum": 37041, "atom2_serNum": 39368, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/1801/O6", "atom2_id": "///A/2005/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3572, "atom1_serNum": 37041, "atom2_serNum": 39432, "donAcc_type": "standard", "distance": 3.466, "atom1_id": "///A/1801/O6", "atom2_id": "///A/2008/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3573, "atom1_serNum": 37042, "atom2_serNum": 39430, "donAcc_type": "standard", "distance": 3.310, "atom1_id": "///A/1801/N1", "atom2_id": "///A/2008/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3574, "atom1_serNum": 37044, "atom2_serNum": 37070, "donAcc_type": "standard", "distance": 3.554, "atom1_id": "///A/1801/N2", "atom2_id": "///A/1803/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3575, "atom1_serNum": 37044, "atom2_serNum": 39429, "donAcc_type": "standard", "distance": 3.162, "atom1_id": "///A/1801/N2", "atom2_id": "///A/2008/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3576, "atom1_serNum": 37057, "atom2_serNum": 39411, "donAcc_type": "acceptable", "distance": 3.584, "atom1_id": "///A/1802/O2'", "atom2_id": "///A/2007/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3577, "atom1_serNum": 37064, "atom2_serNum": 59970, "donAcc_type": "standard", "distance": 3.357, "atom1_id": "///A/1802/N6", "atom2_id": "///C/11/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3578, "atom1_serNum": 37065, "atom2_serNum": 59973, "donAcc_type": "questionable", "distance": 3.248, "atom1_id": "///A/1802/N1", "atom2_id": "///C/11/OD1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3579, "atom1_serNum": 37067, "atom2_serNum": 39388, "donAcc_type": "standard", "distance": 3.594, "atom1_id": "///A/1802/N3", "atom2_id": "///A/2006/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3580, "atom1_serNum": 37077, "atom2_serNum": 39425, "donAcc_type": "acceptable", "distance": 3.210, "atom1_id": "///A/1803/O3'", "atom2_id": "///A/2008/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3581, "atom1_serNum": 37086, "atom2_serNum": 37423, "donAcc_type": "standard", "distance": 3.654, "atom1_id": "///A/1803/N4", "atom2_id": "///A/1819/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3582, "atom1_serNum": 37090, "atom2_serNum": 39425, "donAcc_type": "acceptable", "distance": 2.507, "atom1_id": "///A/1804/OP1", "atom2_id": "///A/2008/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3583, "atom1_serNum": 37126, "atom2_serNum": 37384, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/1805/O6", "atom2_id": "///A/1817/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3584, "atom1_serNum": 37127, "atom2_serNum": 37382, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///A/1805/N1", "atom2_id": "///A/1817/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3585, "atom1_serNum": 37129, "atom2_serNum": 37381, "donAcc_type": "standard", "distance": 2.733, "atom1_id": "///A/1805/N2", "atom2_id": "///A/1817/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3586, "atom1_serNum": 37142, "atom2_serNum": 37158, "donAcc_type": "acceptable", "distance": 3.161, "atom1_id": "///A/1806/O2'", "atom2_id": "///A/1807/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3587, "atom1_serNum": 37147, "atom2_serNum": 37363, "donAcc_type": "standard", "distance": 2.813, "atom1_id": "///A/1806/N3", "atom2_id": "///A/1816/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3588, "atom1_serNum": 37149, "atom2_serNum": 37362, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///A/1806/O4", "atom2_id": "///A/1816/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3589, "atom1_serNum": 37166, "atom2_serNum": 37318, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///A/1807/O2", "atom2_id": "///A/1814/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3590, "atom1_serNum": 37167, "atom2_serNum": 37315, "donAcc_type": "standard", "distance": 3.476, "atom1_id": "///A/1807/N3", "atom2_id": "///A/1814/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3591, "atom1_serNum": 37174, "atom2_serNum": 37296, "donAcc_type": "standard", "distance": 2.557, "atom1_id": "///A/1808/OP2", "atom2_id": "///A/1813/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3592, "atom1_serNum": 37182, "atom2_serNum": 37274, "donAcc_type": "acceptable", "distance": 2.975, "atom1_id": "///A/1808/O2'", "atom2_id": "///A/1812/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3593, "atom1_serNum": 37186, "atom2_serNum": 37274, "donAcc_type": "standard", "distance": 2.514, "atom1_id": "///A/1808/O2", "atom2_id": "///A/1812/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3594, "atom1_serNum": 37189, "atom2_serNum": 37293, "donAcc_type": "questionable", "distance": 2.950, "atom1_id": "///A/1808/O4", "atom2_id": "///A/1813/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3595, "atom1_serNum": 37194, "atom2_serNum": 37239, "donAcc_type": "questionable", "distance": 2.835, "atom1_id": "///A/1809/OP2", "atom2_id": "///A/1811/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3596, "atom1_serNum": 37247, "atom2_serNum": 37260, "donAcc_type": "acceptable", "distance": 2.856, "atom1_id": "///A/1811/O2'", "atom2_id": "///A/1812/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3597, "atom1_serNum": 37247, "atom2_serNum": 37263, "donAcc_type": "acceptable", "distance": 2.697, "atom1_id": "///A/1811/O2'", "atom2_id": "///A/1812/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3598, "atom1_serNum": 37252, "atom2_serNum": 50862, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///A/1811/N3", "atom2_id": "///A/2615/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3599, "atom1_serNum": 37254, "atom2_serNum": 50860, "donAcc_type": "standard", "distance": 2.574, "atom1_id": "///A/1811/N4", "atom2_id": "///A/2615/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3600, "atom1_serNum": 37263, "atom2_serNum": 51328, "donAcc_type": "acceptable", "distance": 3.521, "atom1_id": "///A/1812/O4'", "atom2_id": "///A/2637/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3601, "atom1_serNum": 37267, "atom2_serNum": 51305, "donAcc_type": "acceptable", "distance": 2.825, "atom1_id": "///A/1812/O2'", "atom2_id": "///A/2636/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3602, "atom1_serNum": 37277, "atom2_serNum": 51315, "donAcc_type": "standard", "distance": 3.879, "atom1_id": "///A/1812/N3", "atom2_id": "///A/2636/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3603, "atom1_serNum": 37302, "atom2_serNum": 39468, "donAcc_type": "acceptable", "distance": 3.000, "atom1_id": "///A/1814/OP1", "atom2_id": "///A/2010/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3604, "atom1_serNum": 37319, "atom2_serNum": 50897, "donAcc_type": "acceptable", "distance": 3.799, "atom1_id": "///A/1814/N1", "atom2_id": "///A/2617/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3605, "atom1_serNum": 37324, "atom2_serNum": 39455, "donAcc_type": "standard", "distance": 3.753, "atom1_id": "///A/1815/OP1", "atom2_id": "///A/2009/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3606, "atom1_serNum": 37368, "atom2_serNum": 61546, "donAcc_type": "standard", "distance": 3.154, "atom1_id": "///A/1817/OP1", "atom2_id": "///C/221/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3607, "atom1_serNum": 37388, "atom2_serNum": 61536, "donAcc_type": "standard", "distance": 2.994, "atom1_id": "///A/1818/OP1", "atom2_id": "///C/221/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3608, "atom1_serNum": 37389, "atom2_serNum": 61546, "donAcc_type": "standard", "distance": 3.285, "atom1_id": "///A/1818/OP2", "atom2_id": "///C/221/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3609, "atom1_serNum": 37410, "atom2_serNum": 61522, "donAcc_type": "standard", "distance": 3.208, "atom1_id": "///A/1819/OP1", "atom2_id": "///C/219/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3610, "atom1_serNum": 37410, "atom2_serNum": 61525, "donAcc_type": "questionable", "distance": 3.023, "atom1_id": "///A/1819/OP1", "atom2_id": "///C/219/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3611, "atom1_serNum": 37411, "atom2_serNum": 38246, "donAcc_type": "questionable", "distance": 3.232, "atom1_id": "///A/1819/OP2", "atom2_id": "///A/1857/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3612, "atom1_serNum": 37411, "atom2_serNum": 38247, "donAcc_type": "standard", "distance": 3.338, "atom1_id": "///A/1819/OP2", "atom2_id": "///A/1857/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3613, "atom1_serNum": 37439, "atom2_serNum": 61409, "donAcc_type": "acceptable", "distance": 3.450, "atom1_id": "///A/1820/O2'", "atom2_id": "///C/204/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3614, "atom1_serNum": 37439, "atom2_serNum": 61419, "donAcc_type": "acceptable", "distance": 3.098, "atom1_id": "///A/1820/O2'", "atom2_id": "///C/206/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3615, "atom1_serNum": 37443, "atom2_serNum": 38249, "donAcc_type": "standard", "distance": 2.824, "atom1_id": "///A/1820/N7", "atom2_id": "///A/1857/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3616, "atom1_serNum": 37446, "atom2_serNum": 38239, "donAcc_type": "acceptable", "distance": 2.607, "atom1_id": "///A/1820/N6", "atom2_id": "///A/1857/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3617, "atom1_serNum": 37446, "atom2_serNum": 38250, "donAcc_type": "standard", "distance": 2.730, "atom1_id": "///A/1820/N6", "atom2_id": "///A/1857/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3618, "atom1_serNum": 37449, "atom2_serNum": 38262, "donAcc_type": "acceptable", "distance": 2.966, "atom1_id": "///A/1820/N3", "atom2_id": "///A/1858/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3619, "atom1_serNum": 37452, "atom2_serNum": 61411, "donAcc_type": "standard", "distance": 3.732, "atom1_id": "///A/1821/OP1", "atom2_id": "///C/205/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3620, "atom1_serNum": 37461, "atom2_serNum": 38275, "donAcc_type": "acceptable", "distance": 2.616, "atom1_id": "///A/1821/O2'", "atom2_id": "///A/1859/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3621, "atom1_serNum": 37468, "atom2_serNum": 38224, "donAcc_type": "standard", "distance": 2.963, "atom1_id": "///A/1821/O6", "atom2_id": "///A/1856/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3622, "atom1_serNum": 37469, "atom2_serNum": 38223, "donAcc_type": "standard", "distance": 2.842, "atom1_id": "///A/1821/N1", "atom2_id": "///A/1856/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3623, "atom1_serNum": 37471, "atom2_serNum": 38223, "donAcc_type": "standard", "distance": 3.264, "atom1_id": "///A/1821/N2", "atom2_id": "///A/1856/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3624, "atom1_serNum": 37491, "atom2_serNum": 38206, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///A/1822/O6", "atom2_id": "///A/1855/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3625, "atom1_serNum": 37492, "atom2_serNum": 38204, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/1822/N1", "atom2_id": "///A/1855/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3626, "atom1_serNum": 37494, "atom2_serNum": 38203, "donAcc_type": "standard", "distance": 2.757, "atom1_id": "///A/1822/N2", "atom2_id": "///A/1855/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3627, "atom1_serNum": 37507, "atom2_serNum": 37523, "donAcc_type": "acceptable", "distance": 3.322, "atom1_id": "///A/1823/O2'", "atom2_id": "///A/1824/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3628, "atom1_serNum": 37511, "atom2_serNum": 38184, "donAcc_type": "standard", "distance": 2.805, "atom1_id": "///A/1823/O2", "atom2_id": "///A/1854/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3629, "atom1_serNum": 37511, "atom2_serNum": 38186, "donAcc_type": "standard", "distance": 3.255, "atom1_id": "///A/1823/O2", "atom2_id": "///A/1854/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3630, "atom1_serNum": 37512, "atom2_serNum": 38183, "donAcc_type": "standard", "distance": 3.299, "atom1_id": "///A/1823/N3", "atom2_id": "///A/1854/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3631, "atom1_serNum": 37531, "atom2_serNum": 38163, "donAcc_type": "standard", "distance": 2.717, "atom1_id": "///A/1824/O2", "atom2_id": "///A/1853/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3632, "atom1_serNum": 37532, "atom2_serNum": 38161, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///A/1824/N3", "atom2_id": "///A/1853/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3633, "atom1_serNum": 37534, "atom2_serNum": 38160, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///A/1824/N4", "atom2_id": "///A/1853/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3634, "atom1_serNum": 37551, "atom2_serNum": 38138, "donAcc_type": "standard", "distance": 2.833, "atom1_id": "///A/1825/O2", "atom2_id": "///A/1852/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3635, "atom1_serNum": 37551, "atom2_serNum": 38140, "donAcc_type": "standard", "distance": 3.129, "atom1_id": "///A/1825/O2", "atom2_id": "///A/1852/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3636, "atom1_serNum": 37552, "atom2_serNum": 38137, "donAcc_type": "standard", "distance": 3.057, "atom1_id": "///A/1825/N3", "atom2_id": "///A/1852/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3637, "atom1_serNum": 37558, "atom2_serNum": 61738, "donAcc_type": "standard", "distance": 3.405, "atom1_id": "///A/1826/OP1", "atom2_id": "///C/258/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3638, "atom1_serNum": 37567, "atom2_serNum": 37583, "donAcc_type": "acceptable", "distance": 2.867, "atom1_id": "///A/1826/O2'", "atom2_id": "///A/1827/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3639, "atom1_serNum": 37567, "atom2_serNum": 61744, "donAcc_type": "acceptable", "distance": 2.494, "atom1_id": "///A/1826/O2'", "atom2_id": "///C/259/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3640, "atom1_serNum": 37571, "atom2_serNum": 38117, "donAcc_type": "standard", "distance": 2.710, "atom1_id": "///A/1826/O2", "atom2_id": "///A/1851/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3641, "atom1_serNum": 37572, "atom2_serNum": 38115, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///A/1826/N3", "atom2_id": "///A/1851/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3642, "atom1_serNum": 37574, "atom2_serNum": 38114, "donAcc_type": "standard", "distance": 2.993, "atom1_id": "///A/1826/N4", "atom2_id": "///A/1851/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3643, "atom1_serNum": 37578, "atom2_serNum": 61746, "donAcc_type": "standard", "distance": 3.896, "atom1_id": "///A/1827/OP1", "atom2_id": "///C/260/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3644, "atom1_serNum": 37579, "atom2_serNum": 61870, "donAcc_type": "questionable", "distance": 2.746, "atom1_id": "///A/1827/OP2", "atom2_id": "///C/276/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3645, "atom1_serNum": 37587, "atom2_serNum": 37683, "donAcc_type": "acceptable", "distance": 2.554, "atom1_id": "///A/1827/O2'", "atom2_id": "///A/1831/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3646, "atom1_serNum": 37587, "atom2_serNum": 37691, "donAcc_type": "acceptable", "distance": 2.994, "atom1_id": "///A/1827/O2'", "atom2_id": "///A/1832/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3647, "atom1_serNum": 37592, "atom2_serNum": 38093, "donAcc_type": "standard", "distance": 3.353, "atom1_id": "///A/1827/N3", "atom2_id": "///A/1850/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3648, "atom1_serNum": 37594, "atom2_serNum": 38092, "donAcc_type": "standard", "distance": 3.776, "atom1_id": "///A/1827/O4", "atom2_id": "///A/1850/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3649, "atom1_serNum": 37598, "atom2_serNum": 61755, "donAcc_type": "standard", "distance": 2.329, "atom1_id": "///A/1828/OP1", "atom2_id": "///C/260/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3650, "atom1_serNum": 37600, "atom2_serNum": 61755, "donAcc_type": "standard", "distance": 3.119, "atom1_id": "///A/1828/O5'", "atom2_id": "///C/260/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3651, "atom1_serNum": 37603, "atom2_serNum": 38050, "donAcc_type": "standard", "distance": 3.346, "atom1_id": "///A/1828/O4'", "atom2_id": "///A/1848/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3652, "atom1_serNum": 37605, "atom2_serNum": 61246, "donAcc_type": "standard", "distance": 2.584, "atom1_id": "///A/1828/O3'", "atom2_id": "///C/182/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3653, "atom1_serNum": 37607, "atom2_serNum": 61243, "donAcc_type": "acceptable", "distance": 3.030, "atom1_id": "///A/1828/O2'", "atom2_id": "///C/182/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3654, "atom1_serNum": 37607, "atom2_serNum": 61246, "donAcc_type": "acceptable", "distance": 2.649, "atom1_id": "///A/1828/O2'", "atom2_id": "///C/182/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3655, "atom1_serNum": 37614, "atom2_serNum": 61215, "donAcc_type": "acceptable", "distance": 3.466, "atom1_id": "///A/1828/O6", "atom2_id": "///C/178/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3656, "atom1_serNum": 37615, "atom2_serNum": 38035, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///A/1828/N1", "atom2_id": "///A/1848/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3657, "atom1_serNum": 37617, "atom2_serNum": 38023, "donAcc_type": "acceptable", "distance": 3.191, "atom1_id": "///A/1828/N2", "atom2_id": "///A/1847/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3658, "atom1_serNum": 37617, "atom2_serNum": 38035, "donAcc_type": "standard", "distance": 2.362, "atom1_id": "///A/1828/N2", "atom2_id": "///A/1848/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3659, "atom1_serNum": 37621, "atom2_serNum": 61755, "donAcc_type": "standard", "distance": 3.274, "atom1_id": "///A/1829/OP1", "atom2_id": "///C/260/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3660, "atom1_serNum": 37622, "atom2_serNum": 61246, "donAcc_type": "standard", "distance": 2.475, "atom1_id": "///A/1829/OP2", "atom2_id": "///C/182/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3661, "atom1_serNum": 37622, "atom2_serNum": 61803, "donAcc_type": "acceptable", "distance": 3.244, "atom1_id": "///A/1829/OP2", "atom2_id": "///C/266/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3662, "atom1_serNum": 37626, "atom2_serNum": 37669, "donAcc_type": "questionable", "distance": 3.203, "atom1_id": "///A/1829/O4'", "atom2_id": "///A/1831/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3663, "atom1_serNum": 37630, "atom2_serNum": 37634, "donAcc_type": "acceptable", "distance": 2.850, "atom1_id": "///A/1829/O2'", "atom2_id": "///A/1829/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3664, "atom1_serNum": 37630, "atom2_serNum": 38028, "donAcc_type": "acceptable", "distance": 3.325, "atom1_id": "///A/1829/O2'", "atom2_id": "///A/1847/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3665, "atom1_serNum": 37634, "atom2_serNum": 38008, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///A/1829/O2", "atom2_id": "///A/1846/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3666, "atom1_serNum": 37634, "atom2_serNum": 38010, "donAcc_type": "standard", "distance": 3.148, "atom1_id": "///A/1829/O2", "atom2_id": "///A/1846/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3667, "atom1_serNum": 37635, "atom2_serNum": 38010, "donAcc_type": "standard", "distance": 2.787, "atom1_id": "///A/1829/N3", "atom2_id": "///A/1846/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3668, "atom1_serNum": 37642, "atom2_serNum": 61041, "donAcc_type": "standard", "distance": 3.534, "atom1_id": "///A/1830/OP2", "atom2_id": "///C/153/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3669, "atom1_serNum": 37646, "atom2_serNum": 44214, "donAcc_type": "acceptable", "distance": 3.122, "atom1_id": "///A/1830/O4'", "atom2_id": "///A/2232/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3670, "atom1_serNum": 37650, "atom2_serNum": 37664, "donAcc_type": "acceptable", "distance": 2.458, "atom1_id": "///A/1830/O2'", "atom2_id": "///A/1831/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3671, "atom1_serNum": 37665, "atom2_serNum": 37941, "donAcc_type": "standard", "distance": 3.371, "atom1_id": "///A/1831/OP2", "atom2_id": "///A/1843/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3672, "atom1_serNum": 37673, "atom2_serNum": 37687, "donAcc_type": "acceptable", "distance": 3.087, "atom1_id": "///A/1831/O2'", "atom2_id": "///A/1832/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3673, "atom1_serNum": 37673, "atom2_serNum": 37688, "donAcc_type": "acceptable", "distance": 2.283, "atom1_id": "///A/1831/O2'", "atom2_id": "///A/1832/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3674, "atom1_serNum": 37677, "atom2_serNum": 37963, "donAcc_type": "standard", "distance": 3.099, "atom1_id": "///A/1831/N7", "atom2_id": "///A/1844/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3675, "atom1_serNum": 37686, "atom2_serNum": 61765, "donAcc_type": "standard", "distance": 2.840, "atom1_id": "///A/1832/OP1", "atom2_id": "///C/261/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3676, "atom1_serNum": 37699, "atom2_serNum": 37943, "donAcc_type": "standard", "distance": 3.051, "atom1_id": "///A/1832/N7", "atom2_id": "///A/1843/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3677, "atom1_serNum": 37702, "atom2_serNum": 37933, "donAcc_type": "acceptable", "distance": 2.673, "atom1_id": "///A/1832/N6", "atom2_id": "///A/1843/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3678, "atom1_serNum": 37702, "atom2_serNum": 37944, "donAcc_type": "standard", "distance": 3.073, "atom1_id": "///A/1832/N6", "atom2_id": "///A/1843/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3679, "atom1_serNum": 37703, "atom2_serNum": 38107, "donAcc_type": "acceptable", "distance": 2.645, "atom1_id": "///A/1832/N1", "atom2_id": "///A/1851/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3680, "atom1_serNum": 37705, "atom2_serNum": 38117, "donAcc_type": "standard", "distance": 3.737, "atom1_id": "///A/1832/N3", "atom2_id": "///A/1851/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3681, "atom1_serNum": 37717, "atom2_serNum": 38130, "donAcc_type": "acceptable", "distance": 3.617, "atom1_id": "///A/1833/O2'", "atom2_id": "///A/1852/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3682, "atom1_serNum": 37724, "atom2_serNum": 37920, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/1833/O6", "atom2_id": "///A/1842/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3683, "atom1_serNum": 37725, "atom2_serNum": 37918, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/1833/N1", "atom2_id": "///A/1842/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3684, "atom1_serNum": 37727, "atom2_serNum": 37917, "donAcc_type": "standard", "distance": 2.815, "atom1_id": "///A/1833/N2", "atom2_id": "///A/1842/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3685, "atom1_serNum": 37740, "atom2_serNum": 60268, "donAcc_type": "acceptable", "distance": 3.127, "atom1_id": "///A/1834/O2'", "atom2_id": "///C/50/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3686, "atom1_serNum": 37744, "atom2_serNum": 37900, "donAcc_type": "standard", "distance": 2.765, "atom1_id": "///A/1834/O2", "atom2_id": "///A/1841/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3687, "atom1_serNum": 37745, "atom2_serNum": 37898, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///A/1834/N3", "atom2_id": "///A/1841/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3688, "atom1_serNum": 37747, "atom2_serNum": 37897, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///A/1834/N4", "atom2_id": "///A/1841/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3689, "atom1_serNum": 37760, "atom2_serNum": 60242, "donAcc_type": "acceptable", "distance": 3.426, "atom1_id": "///A/1835/O2'", "atom2_id": "///C/46/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3690, "atom1_serNum": 37764, "atom2_serNum": 37877, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///A/1835/O2", "atom2_id": "///A/1840/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3691, "atom1_serNum": 37765, "atom2_serNum": 37875, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///A/1835/N3", "atom2_id": "///A/1840/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3692, "atom1_serNum": 37767, "atom2_serNum": 37874, "donAcc_type": "standard", "distance": 3.000, "atom1_id": "///A/1835/N4", "atom2_id": "///A/1840/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3693, "atom1_serNum": 37790, "atom2_serNum": 37837, "donAcc_type": "standard", "distance": 2.601, "atom1_id": "///A/1836/N2", "atom2_id": "///A/1839/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3694, "atom1_serNum": 37790, "atom2_serNum": 37849, "donAcc_type": "standard", "distance": 2.630, "atom1_id": "///A/1836/N2", "atom2_id": "///A/1839/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3695, "atom1_serNum": 37867, "atom2_serNum": 60234, "donAcc_type": "acceptable", "distance": 3.350, "atom1_id": "///A/1840/O2'", "atom2_id": "///C/45/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3696, "atom1_serNum": 37890, "atom2_serNum": 37909, "donAcc_type": "acceptable", "distance": 3.026, "atom1_id": "///A/1841/O2'", "atom2_id": "///A/1842/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3697, "atom1_serNum": 37925, "atom2_serNum": 37956, "donAcc_type": "acceptable", "distance": 2.592, "atom1_id": "///A/1843/OP2", "atom2_id": "///A/1844/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3698, "atom1_serNum": 37933, "atom2_serNum": 38107, "donAcc_type": "acceptable", "distance": 3.296, "atom1_id": "///A/1843/O2'", "atom2_id": "///A/1851/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3699, "atom1_serNum": 37948, "atom2_serNum": 60308, "donAcc_type": "standard", "distance": 3.724, "atom1_id": "///A/1844/OP2", "atom2_id": "///C/54/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3700, "atom1_serNum": 37952, "atom2_serNum": 37996, "donAcc_type": "questionable", "distance": 3.195, "atom1_id": "///A/1844/O4'", "atom2_id": "///A/1846/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3701, "atom1_serNum": 37991, "atom2_serNum": 60371, "donAcc_type": "acceptable", "distance": 3.792, "atom1_id": "///A/1846/OP1", "atom2_id": "///C/62/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3702, "atom1_serNum": 37992, "atom2_serNum": 61067, "donAcc_type": "standard", "distance": 3.487, "atom1_id": "///A/1846/OP2", "atom2_id": "///C/156/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3703, "atom1_serNum": 38015, "atom2_serNum": 61064, "donAcc_type": "standard", "distance": 2.848, "atom1_id": "///A/1847/OP2", "atom2_id": "///C/156/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3704, "atom1_serNum": 38015, "atom2_serNum": 61067, "donAcc_type": "standard", "distance": 2.758, "atom1_id": "///A/1847/OP2", "atom2_id": "///C/156/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3705, "atom1_serNum": 38023, "atom2_serNum": 38035, "donAcc_type": "acceptable", "distance": 2.708, "atom1_id": "///A/1847/O2'", "atom2_id": "///A/1848/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3706, "atom1_serNum": 38023, "atom2_serNum": 61036, "donAcc_type": "acceptable", "distance": 3.006, "atom1_id": "///A/1847/O2'", "atom2_id": "///C/153/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3707, "atom1_serNum": 38034, "atom2_serNum": 61057, "donAcc_type": "standard", "distance": 2.977, "atom1_id": "///A/1848/OP1", "atom2_id": "///C/156/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3708, "atom1_serNum": 38034, "atom2_serNum": 61068, "donAcc_type": "standard", "distance": 3.234, "atom1_id": "///A/1848/OP1", "atom2_id": "///C/157/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3709, "atom1_serNum": 38035, "atom2_serNum": 61050, "donAcc_type": "standard", "distance": 3.201, "atom1_id": "///A/1848/OP2", "atom2_id": "///C/155/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3710, "atom1_serNum": 38065, "atom2_serNum": 61073, "donAcc_type": "acceptable", "distance": 2.473, "atom1_id": "///A/1849/O2'", "atom2_id": "///C/157/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3711, "atom1_serNum": 38065, "atom2_serNum": 61077, "donAcc_type": "acceptable", "distance": 2.888, "atom1_id": "///A/1849/O2'", "atom2_id": "///C/158/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3712, "atom1_serNum": 38069, "atom2_serNum": 61368, "donAcc_type": "standard", "distance": 3.885, "atom1_id": "///A/1849/O2", "atom2_id": "///C/200/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3713, "atom1_serNum": 38070, "atom2_serNum": 61353, "donAcc_type": "standard", "distance": 2.818, "atom1_id": "///A/1849/N3", "atom2_id": "///C/198/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 3714, "atom1_serNum": 38072, "atom2_serNum": 61082, "donAcc_type": "questionable", "distance": 2.904, "atom1_id": "///A/1849/O4", "atom2_id": "///C/159/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3715, "atom1_serNum": 38145, "atom2_serNum": 60296, "donAcc_type": "acceptable", "distance": 3.078, "atom1_id": "///A/1853/OP2", "atom2_id": "///C/53/ND1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3716, "atom1_serNum": 38176, "atom2_serNum": 38195, "donAcc_type": "acceptable", "distance": 3.174, "atom1_id": "///A/1854/O2'", "atom2_id": "///A/1855/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3717, "atom1_serNum": 38191, "atom2_serNum": 61547, "donAcc_type": "standard", "distance": 3.184, "atom1_id": "///A/1855/OP2", "atom2_id": "///C/222/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3718, "atom1_serNum": 38219, "atom2_serNum": 38232, "donAcc_type": "acceptable", "distance": 2.715, "atom1_id": "///A/1856/O2'", "atom2_id": "///A/1857/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3719, "atom1_serNum": 38327, "atom2_serNum": 38343, "donAcc_type": "acceptable", "distance": 2.719, "atom1_id": "///A/1861/O2'", "atom2_id": "///A/1862/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3720, "atom1_serNum": 38347, "atom2_serNum": 38363, "donAcc_type": "acceptable", "distance": 2.704, "atom1_id": "///A/1862/O2'", "atom2_id": "///A/1863/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3721, "atom1_serNum": 38402, "atom2_serNum": 38446, "donAcc_type": "questionable", "distance": 3.001, "atom1_id": "///A/1866/OP2", "atom2_id": "///A/1868/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3722, "atom1_serNum": 38410, "atom2_serNum": 38454, "donAcc_type": "acceptable", "distance": 2.243, "atom1_id": "///A/1866/O2'", "atom2_id": "///A/1868/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3723, "atom1_serNum": 38410, "atom2_serNum": 38457, "donAcc_type": "acceptable", "distance": 3.018, "atom1_id": "///A/1866/O2'", "atom2_id": "///A/1868/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3724, "atom1_serNum": 38414, "atom2_serNum": 39335, "donAcc_type": "questionable", "distance": 3.185, "atom1_id": "///A/1866/O2", "atom2_id": "///A/1929/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3725, "atom1_serNum": 38422, "atom2_serNum": 39324, "donAcc_type": "standard", "distance": 2.966, "atom1_id": "///A/1867/OP2", "atom2_id": "///A/1928/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3726, "atom1_serNum": 38426, "atom2_serNum": 38477, "donAcc_type": "questionable", "distance": 2.905, "atom1_id": "///A/1867/O4'", "atom2_id": "///A/1869/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3727, "atom1_serNum": 38428, "atom2_serNum": 38465, "donAcc_type": "questionable", "distance": 2.801, "atom1_id": "///A/1867/O3'", "atom2_id": "///A/1869/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3728, "atom1_serNum": 38437, "atom2_serNum": 38503, "donAcc_type": "standard", "distance": 2.699, "atom1_id": "///A/1867/N4", "atom2_id": "///A/1870/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3729, "atom1_serNum": 38437, "atom2_serNum": 38523, "donAcc_type": "standard", "distance": 2.564, "atom1_id": "///A/1867/N4", "atom2_id": "///A/1871/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3730, "atom1_serNum": 38437, "atom2_serNum": 39304, "donAcc_type": "standard", "distance": 3.243, "atom1_id": "///A/1867/N4", "atom2_id": "///A/1927/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3731, "atom1_serNum": 38483, "atom2_serNum": 39339, "donAcc_type": "acceptable", "distance": 3.458, "atom1_id": "///A/1869/N2", "atom2_id": "///A/1929/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3732, "atom1_serNum": 38496, "atom2_serNum": 38507, "donAcc_type": "acceptable", "distance": 2.039, "atom1_id": "///A/1870/O2'", "atom2_id": "///A/1871/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3733, "atom1_serNum": 38503, "atom2_serNum": 39317, "donAcc_type": "acceptable", "distance": 2.446, "atom1_id": "///A/1870/O4", "atom2_id": "///A/1928/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3734, "atom1_serNum": 38516, "atom2_serNum": 38532, "donAcc_type": "acceptable", "distance": 2.666, "atom1_id": "///A/1871/O2'", "atom2_id": "///A/1872/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3735, "atom1_serNum": 38523, "atom2_serNum": 39317, "donAcc_type": "acceptable", "distance": 2.882, "atom1_id": "///A/1871/O6", "atom2_id": "///A/1928/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3736, "atom1_serNum": 38524, "atom2_serNum": 39317, "donAcc_type": "acceptable", "distance": 2.983, "atom1_id": "///A/1871/N1", "atom2_id": "///A/1928/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3737, "atom1_serNum": 38526, "atom2_serNum": 39301, "donAcc_type": "standard", "distance": 3.187, "atom1_id": "///A/1871/N2", "atom2_id": "///A/1927/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3738, "atom1_serNum": 38530, "atom2_serNum": 78646, "donAcc_type": "standard", "distance": 3.156, "atom1_id": "///A/1872/OP1", "atom2_id": "///W/301/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3739, "atom1_serNum": 38537, "atom2_serNum": 78646, "donAcc_type": "standard", "distance": 2.972, "atom1_id": "///A/1872/O3'", "atom2_id": "///W/301/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3740, "atom1_serNum": 38543, "atom2_serNum": 39284, "donAcc_type": "standard", "distance": 2.752, "atom1_id": "///A/1872/O2", "atom2_id": "///A/1926/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3741, "atom1_serNum": 38544, "atom2_serNum": 39282, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///A/1872/N3", "atom2_id": "///A/1926/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3742, "atom1_serNum": 38544, "atom2_serNum": 39302, "donAcc_type": "standard", "distance": 3.524, "atom1_id": "///A/1872/N3", "atom2_id": "///A/1927/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3743, "atom1_serNum": 38546, "atom2_serNum": 39281, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///A/1872/N4", "atom2_id": "///A/1926/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3744, "atom1_serNum": 38546, "atom2_serNum": 39304, "donAcc_type": "standard", "distance": 3.462, "atom1_id": "///A/1872/N4", "atom2_id": "///A/1927/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3745, "atom1_serNum": 38551, "atom2_serNum": 78646, "donAcc_type": "standard", "distance": 3.212, "atom1_id": "///A/1873/OP2", "atom2_id": "///W/301/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3746, "atom1_serNum": 38564, "atom2_serNum": 39260, "donAcc_type": "standard", "distance": 2.767, "atom1_id": "///A/1873/N3", "atom2_id": "///A/1925/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3747, "atom1_serNum": 38566, "atom2_serNum": 39259, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///A/1873/O4", "atom2_id": "///A/1925/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3748, "atom1_serNum": 38579, "atom2_serNum": 38595, "donAcc_type": "acceptable", "distance": 2.625, "atom1_id": "///A/1874/O2'", "atom2_id": "///A/1875/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3749, "atom1_serNum": 38586, "atom2_serNum": 39259, "donAcc_type": "standard", "distance": 2.787, "atom1_id": "///A/1874/O6", "atom2_id": "///A/1925/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3750, "atom1_serNum": 38587, "atom2_serNum": 39237, "donAcc_type": "standard", "distance": 2.713, "atom1_id": "///A/1874/N1", "atom2_id": "///A/1924/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3751, "atom1_serNum": 38587, "atom2_serNum": 39260, "donAcc_type": "standard", "distance": 2.775, "atom1_id": "///A/1874/N1", "atom2_id": "///A/1925/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3752, "atom1_serNum": 38589, "atom2_serNum": 39236, "donAcc_type": "standard", "distance": 3.288, "atom1_id": "///A/1874/N2", "atom2_id": "///A/1924/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3753, "atom1_serNum": 38602, "atom2_serNum": 38618, "donAcc_type": "acceptable", "distance": 2.626, "atom1_id": "///A/1875/O2'", "atom2_id": "///A/1876/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3754, "atom1_serNum": 38602, "atom2_serNum": 38621, "donAcc_type": "acceptable", "distance": 2.563, "atom1_id": "///A/1875/O2'", "atom2_id": "///A/1876/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3755, "atom1_serNum": 38609, "atom2_serNum": 39239, "donAcc_type": "standard", "distance": 2.620, "atom1_id": "///A/1875/O6", "atom2_id": "///A/1924/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3756, "atom1_serNum": 38610, "atom2_serNum": 39237, "donAcc_type": "standard", "distance": 2.485, "atom1_id": "///A/1875/N1", "atom2_id": "///A/1924/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3757, "atom1_serNum": 38612, "atom2_serNum": 39236, "donAcc_type": "standard", "distance": 2.294, "atom1_id": "///A/1875/N2", "atom2_id": "///A/1924/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3758, "atom1_serNum": 38625, "atom2_serNum": 38643, "donAcc_type": "acceptable", "distance": 3.017, "atom1_id": "///A/1876/O2'", "atom2_id": "///A/1877/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3759, "atom1_serNum": 38632, "atom2_serNum": 39197, "donAcc_type": "standard", "distance": 3.102, "atom1_id": "///A/1876/N6", "atom2_id": "///A/1922/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3760, "atom1_serNum": 38647, "atom2_serNum": 38660, "donAcc_type": "acceptable", "distance": 2.309, "atom1_id": "///A/1877/O2'", "atom2_id": "///A/1878/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3761, "atom1_serNum": 38651, "atom2_serNum": 38673, "donAcc_type": "questionable", "distance": 2.891, "atom1_id": "///A/1877/N7", "atom2_id": "///A/1878/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3762, "atom1_serNum": 38654, "atom2_serNum": 38676, "donAcc_type": "standard", "distance": 3.641, "atom1_id": "///A/1877/N6", "atom2_id": "///A/1878/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3763, "atom1_serNum": 38654, "atom2_serNum": 39196, "donAcc_type": "standard", "distance": 3.227, "atom1_id": "///A/1877/N6", "atom2_id": "///A/1922/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3764, "atom1_serNum": 38654, "atom2_serNum": 39197, "donAcc_type": "standard", "distance": 2.450, "atom1_id": "///A/1877/N6", "atom2_id": "///A/1922/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3765, "atom1_serNum": 38669, "atom2_serNum": 38688, "donAcc_type": "acceptable", "distance": 2.551, "atom1_id": "///A/1878/O2'", "atom2_id": "///A/1879/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3766, "atom1_serNum": 38676, "atom2_serNum": 39179, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/1878/O6", "atom2_id": "///A/1921/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3767, "atom1_serNum": 38677, "atom2_serNum": 39177, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///A/1878/N1", "atom2_id": "///A/1921/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3768, "atom1_serNum": 38679, "atom2_serNum": 39176, "donAcc_type": "standard", "distance": 2.806, "atom1_id": "///A/1878/N2", "atom2_id": "///A/1921/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3769, "atom1_serNum": 38692, "atom2_serNum": 38711, "donAcc_type": "acceptable", "distance": 3.250, "atom1_id": "///A/1879/O2'", "atom2_id": "///A/1880/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3770, "atom1_serNum": 38699, "atom2_serNum": 39179, "donAcc_type": "standard", "distance": 3.002, "atom1_id": "///A/1879/O6", "atom2_id": "///A/1921/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3771, "atom1_serNum": 38700, "atom2_serNum": 39177, "donAcc_type": "standard", "distance": 2.850, "atom1_id": "///A/1879/N1", "atom2_id": "///A/1921/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3772, "atom1_serNum": 38702, "atom2_serNum": 39159, "donAcc_type": "questionable", "distance": 2.884, "atom1_id": "///A/1879/N2", "atom2_id": "///A/1920/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3773, "atom1_serNum": 38702, "atom2_serNum": 39176, "donAcc_type": "standard", "distance": 2.564, "atom1_id": "///A/1879/N2", "atom2_id": "///A/1921/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3774, "atom1_serNum": 38715, "atom2_serNum": 38746, "donAcc_type": "acceptable", "distance": 3.019, "atom1_id": "///A/1880/O2'", "atom2_id": "///A/1882/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3775, "atom1_serNum": 38719, "atom2_serNum": 39134, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///A/1880/O2", "atom2_id": "///A/1919/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3776, "atom1_serNum": 38719, "atom2_serNum": 39159, "donAcc_type": "standard", "distance": 2.334, "atom1_id": "///A/1880/O2", "atom2_id": "///A/1920/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3777, "atom1_serNum": 38720, "atom2_serNum": 39157, "donAcc_type": "questionable", "distance": 2.664, "atom1_id": "///A/1880/N3", "atom2_id": "///A/1920/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3778, "atom1_serNum": 38722, "atom2_serNum": 39156, "donAcc_type": "questionable", "distance": 2.982, "atom1_id": "///A/1880/O4", "atom2_id": "///A/1920/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3779, "atom1_serNum": 38733, "atom2_serNum": 39112, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///A/1881/O3'", "atom2_id": "///A/1918/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3780, "atom1_serNum": 38735, "atom2_serNum": 38759, "donAcc_type": "acceptable", "distance": 2.871, "atom1_id": "///A/1881/O2'", "atom2_id": "///A/1882/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3781, "atom1_serNum": 38735, "atom2_serNum": 39082, "donAcc_type": "acceptable", "distance": 3.493, "atom1_id": "///A/1881/O2'", "atom2_id": "///A/1917/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3782, "atom1_serNum": 38735, "atom2_serNum": 39109, "donAcc_type": "acceptable", "distance": 3.016, "atom1_id": "///A/1881/O2'", "atom2_id": "///A/1918/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3783, "atom1_serNum": 38739, "atom2_serNum": 39134, "donAcc_type": "standard", "distance": 3.610, "atom1_id": "///A/1881/O2", "atom2_id": "///A/1919/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3784, "atom1_serNum": 38746, "atom2_serNum": 39134, "donAcc_type": "standard", "distance": 3.419, "atom1_id": "///A/1882/OP1", "atom2_id": "///A/1919/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3785, "atom1_serNum": 38748, "atom2_serNum": 39112, "donAcc_type": "standard", "distance": 2.630, "atom1_id": "///A/1882/O5'", "atom2_id": "///A/1918/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3786, "atom1_serNum": 38755, "atom2_serNum": 38769, "donAcc_type": "acceptable", "distance": 2.734, "atom1_id": "///A/1882/O2'", "atom2_id": "///A/1883/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3787, "atom1_serNum": 38755, "atom2_serNum": 39092, "donAcc_type": "acceptable", "distance": 2.357, "atom1_id": "///A/1882/O2'", "atom2_id": "///A/1917/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3788, "atom1_serNum": 38775, "atom2_serNum": 78081, "donAcc_type": "standard", "distance": 3.408, "atom1_id": "///A/1883/O3'", "atom2_id": "///W/222/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3789, "atom1_serNum": 38777, "atom2_serNum": 38790, "donAcc_type": "acceptable", "distance": 3.081, "atom1_id": "///A/1883/O2'", "atom2_id": "///A/1884/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3790, "atom1_serNum": 38777, "atom2_serNum": 78057, "donAcc_type": "acceptable", "distance": 3.252, "atom1_id": "///A/1883/O2'", "atom2_id": "///W/219/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3791, "atom1_serNum": 38777, "atom2_serNum": 78073, "donAcc_type": "acceptable", "distance": 2.787, "atom1_id": "///A/1883/O2'", "atom2_id": "///W/221/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3792, "atom1_serNum": 38781, "atom2_serNum": 39092, "donAcc_type": "standard", "distance": 2.706, "atom1_id": "///A/1883/N7", "atom2_id": "///A/1917/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3793, "atom1_serNum": 38784, "atom2_serNum": 39092, "donAcc_type": "questionable", "distance": 2.411, "atom1_id": "///A/1883/N6", "atom2_id": "///A/1917/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3794, "atom1_serNum": 38784, "atom2_serNum": 39093, "donAcc_type": "standard", "distance": 2.672, "atom1_id": "///A/1883/N6", "atom2_id": "///A/1917/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3795, "atom1_serNum": 38790, "atom2_serNum": 78059, "donAcc_type": "acceptable", "distance": 3.653, "atom1_id": "///A/1884/OP1", "atom2_id": "///W/219/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3796, "atom1_serNum": 38799, "atom2_serNum": 38813, "donAcc_type": "acceptable", "distance": 2.208, "atom1_id": "///A/1884/O2'", "atom2_id": "///A/1885/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3797, "atom1_serNum": 38806, "atom2_serNum": 39067, "donAcc_type": "standard", "distance": 2.650, "atom1_id": "///A/1884/O6", "atom2_id": "///A/1916/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3798, "atom1_serNum": 38807, "atom2_serNum": 39066, "donAcc_type": "standard", "distance": 3.150, "atom1_id": "///A/1884/N1", "atom2_id": "///A/1916/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3799, "atom1_serNum": 38829, "atom2_serNum": 39049, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///A/1885/N6", "atom2_id": "///A/1915/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3800, "atom1_serNum": 38830, "atom2_serNum": 39047, "donAcc_type": "standard", "distance": 2.748, "atom1_id": "///A/1885/N1", "atom2_id": "///A/1915/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3801, "atom1_serNum": 38844, "atom2_serNum": 39028, "donAcc_type": "acceptable", "distance": 3.716, "atom1_id": "///A/1886/O2'", "atom2_id": "///A/1914/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3802, "atom1_serNum": 38854, "atom2_serNum": 39024, "donAcc_type": "standard", "distance": 3.255, "atom1_id": "///A/1886/N2", "atom2_id": "///A/1914/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3803, "atom1_serNum": 38854, "atom2_serNum": 39027, "donAcc_type": "questionable", "distance": 2.373, "atom1_id": "///A/1886/N2", "atom2_id": "///A/1914/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3804, "atom1_serNum": 38854, "atom2_serNum": 39049, "donAcc_type": "standard", "distance": 2.859, "atom1_id": "///A/1886/N2", "atom2_id": "///A/1915/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3805, "atom1_serNum": 38855, "atom2_serNum": 39027, "donAcc_type": "standard", "distance": 2.503, "atom1_id": "///A/1886/N3", "atom2_id": "///A/1914/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3806, "atom1_serNum": 38867, "atom2_serNum": 39002, "donAcc_type": "acceptable", "distance": 2.766, "atom1_id": "///A/1887/O2'", "atom2_id": "///A/1913/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3807, "atom1_serNum": 38867, "atom2_serNum": 39005, "donAcc_type": "acceptable", "distance": 3.235, "atom1_id": "///A/1887/O2'", "atom2_id": "///A/1913/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3808, "atom1_serNum": 38875, "atom2_serNum": 38975, "donAcc_type": "acceptable", "distance": 2.857, "atom1_id": "///A/1887/N1", "atom2_id": "///A/1912/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3809, "atom1_serNum": 38877, "atom2_serNum": 38975, "donAcc_type": "acceptable", "distance": 2.625, "atom1_id": "///A/1887/N2", "atom2_id": "///A/1912/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3810, "atom1_serNum": 38882, "atom2_serNum": 38985, "donAcc_type": "standard", "distance": 2.690, "atom1_id": "///A/1888/OP2", "atom2_id": "///A/1912/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3811, "atom1_serNum": 38894, "atom2_serNum": 38985, "donAcc_type": "standard", "distance": 2.569, "atom1_id": "///A/1888/N7", "atom2_id": "///A/1912/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3812, "atom1_serNum": 38897, "atom2_serNum": 38975, "donAcc_type": "acceptable", "distance": 2.233, "atom1_id": "///A/1888/N6", "atom2_id": "///A/1912/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3813, "atom1_serNum": 38897, "atom2_serNum": 38986, "donAcc_type": "standard", "distance": 3.209, "atom1_id": "///A/1888/N6", "atom2_id": "///A/1912/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3814, "atom1_serNum": 38897, "atom2_serNum": 38991, "donAcc_type": "standard", "distance": 2.841, "atom1_id": "///A/1888/N6", "atom2_id": "///A/1913/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3815, "atom1_serNum": 38904, "atom2_serNum": 38942, "donAcc_type": "standard", "distance": 2.624, "atom1_id": "///A/1889/OP2", "atom2_id": "///A/1890/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3816, "atom1_serNum": 38939, "atom2_serNum": 38959, "donAcc_type": "questionable", "distance": 2.683, "atom1_id": "///A/1890/O2", "atom2_id": "///A/1911/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3817, "atom1_serNum": 38975, "atom2_serNum": 38991, "donAcc_type": "acceptable", "distance": 2.938, "atom1_id": "///A/1912/O2'", "atom2_id": "///A/1913/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3818, "atom1_serNum": 39020, "atom2_serNum": 39035, "donAcc_type": "acceptable", "distance": 2.084, "atom1_id": "///A/1914/O2'", "atom2_id": "///A/1915/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3819, "atom1_serNum": 39020, "atom2_serNum": 39038, "donAcc_type": "acceptable", "distance": 3.136, "atom1_id": "///A/1914/O2'", "atom2_id": "///A/1915/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3820, "atom1_serNum": 39062, "atom2_serNum": 39074, "donAcc_type": "acceptable", "distance": 2.387, "atom1_id": "///A/1916/O2'", "atom2_id": "///A/1917/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3821, "atom1_serNum": 39062, "atom2_serNum": 39075, "donAcc_type": "acceptable", "distance": 2.564, "atom1_id": "///A/1916/O2'", "atom2_id": "///A/1917/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3822, "atom1_serNum": 39190, "atom2_serNum": 39224, "donAcc_type": "questionable", "distance": 2.640, "atom1_id": "///A/1922/O3'", "atom2_id": "///A/1924/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3823, "atom1_serNum": 39192, "atom2_serNum": 39225, "donAcc_type": "acceptable", "distance": 3.144, "atom1_id": "///A/1922/O2'", "atom2_id": "///A/1924/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3824, "atom1_serNum": 39192, "atom2_serNum": 39244, "donAcc_type": "acceptable", "distance": 3.031, "atom1_id": "///A/1922/O2'", "atom2_id": "///A/1925/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3825, "atom1_serNum": 39196, "atom2_serNum": 39225, "donAcc_type": "questionable", "distance": 3.028, "atom1_id": "///A/1922/O2", "atom2_id": "///A/1924/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3826, "atom1_serNum": 39232, "atom2_serNum": 39245, "donAcc_type": "acceptable", "distance": 2.843, "atom1_id": "///A/1924/O2'", "atom2_id": "///A/1925/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3827, "atom1_serNum": 39232, "atom2_serNum": 39248, "donAcc_type": "acceptable", "distance": 2.382, "atom1_id": "///A/1924/O2'", "atom2_id": "///A/1925/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3828, "atom1_serNum": 39297, "atom2_serNum": 39330, "donAcc_type": "acceptable", "distance": 3.170, "atom1_id": "///A/1927/O2'", "atom2_id": "///A/1929/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3829, "atom1_serNum": 39361, "atom2_serNum": 39374, "donAcc_type": "acceptable", "distance": 2.446, "atom1_id": "///A/2005/O2'", "atom2_id": "///A/2006/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3830, "atom1_serNum": 39361, "atom2_serNum": 39377, "donAcc_type": "acceptable", "distance": 3.060, "atom1_id": "///A/2005/O2'", "atom2_id": "///A/2006/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3831, "atom1_serNum": 39365, "atom2_serNum": 39385, "donAcc_type": "questionable", "distance": 3.221, "atom1_id": "///A/2005/O2", "atom2_id": "///A/2006/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3832, "atom1_serNum": 39365, "atom2_serNum": 39410, "donAcc_type": "standard", "distance": 2.840, "atom1_id": "///A/2005/O2", "atom2_id": "///A/2007/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3833, "atom1_serNum": 39432, "atom2_serNum": 39452, "donAcc_type": "standard", "distance": 3.075, "atom1_id": "///A/2008/N4", "atom2_id": "///A/2009/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3834, "atom1_serNum": 39445, "atom2_serNum": 39482, "donAcc_type": "acceptable", "distance": 3.194, "atom1_id": "///A/2009/O2'", "atom2_id": "///A/2011/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3835, "atom1_serNum": 39610, "atom2_serNum": 66368, "donAcc_type": "standard", "distance": 3.907, "atom1_id": "///A/2017/OP1", "atom2_id": "///H/7/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3836, "atom1_serNum": 39697, "atom2_serNum": 39751, "donAcc_type": "standard", "distance": 3.677, "atom1_id": "///A/2021/O4'", "atom2_id": "///A/2023/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3837, "atom1_serNum": 39701, "atom2_serNum": 39811, "donAcc_type": "acceptable", "distance": 3.426, "atom1_id": "///A/2021/O2'", "atom2_id": "///A/2026/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3838, "atom1_serNum": 39709, "atom2_serNum": 39788, "donAcc_type": "standard", "distance": 3.366, "atom1_id": "///A/2021/N1", "atom2_id": "///A/2025/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3839, "atom1_serNum": 39711, "atom2_serNum": 39784, "donAcc_type": "acceptable", "distance": 3.169, "atom1_id": "///A/2021/N2", "atom2_id": "///A/2025/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3840, "atom1_serNum": 39711, "atom2_serNum": 39788, "donAcc_type": "standard", "distance": 3.242, "atom1_id": "///A/2021/N2", "atom2_id": "///A/2025/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3841, "atom1_serNum": 39735, "atom2_serNum": 62835, "donAcc_type": "standard", "distance": 3.794, "atom1_id": "///A/2023/OP1", "atom2_id": "///D/133/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3842, "atom1_serNum": 39744, "atom2_serNum": 39756, "donAcc_type": "acceptable", "distance": 2.585, "atom1_id": "///A/2023/O2'", "atom2_id": "///A/2024/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3843, "atom1_serNum": 39744, "atom2_serNum": 39784, "donAcc_type": "acceptable", "distance": 3.461, "atom1_id": "///A/2023/O2'", "atom2_id": "///A/2025/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3844, "atom1_serNum": 39756, "atom2_serNum": 39784, "donAcc_type": "acceptable", "distance": 3.488, "atom1_id": "///A/2024/OP2", "atom2_id": "///A/2025/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3845, "atom1_serNum": 39764, "atom2_serNum": 39775, "donAcc_type": "acceptable", "distance": 2.988, "atom1_id": "///A/2024/O2'", "atom2_id": "///A/2025/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3846, "atom1_serNum": 39768, "atom2_serNum": 66331, "donAcc_type": "questionable", "distance": 2.535, "atom1_id": "///A/2024/O2", "atom2_id": "///H/3/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3847, "atom1_serNum": 39768, "atom2_serNum": 66332, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///A/2024/O2", "atom2_id": "///H/3/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3848, "atom1_serNum": 39782, "atom2_serNum": 62823, "donAcc_type": "standard", "distance": 3.729, "atom1_id": "///A/2025/O3'", "atom2_id": "///D/130/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3849, "atom1_serNum": 39784, "atom2_serNum": 39788, "donAcc_type": "acceptable", "distance": 3.190, "atom1_id": "///A/2025/O2'", "atom2_id": "///A/2025/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3850, "atom1_serNum": 39796, "atom2_serNum": 62812, "donAcc_type": "acceptable", "distance": 3.434, "atom1_id": "///A/2026/OP2", "atom2_id": "///D/129/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3851, "atom1_serNum": 39797, "atom2_serNum": 62820, "donAcc_type": "standard", "distance": 2.368, "atom1_id": "///A/2026/O5'", "atom2_id": "///D/130/NE", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3852, "atom1_serNum": 39826, "atom2_serNum": 53815, "donAcc_type": "acceptable", "distance": 2.629, "atom1_id": "///A/2027/O2'", "atom2_id": "///A/2753/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3853, "atom1_serNum": 39839, "atom2_serNum": 53795, "donAcc_type": "acceptable", "distance": 3.540, "atom1_id": "///A/2028/OP1", "atom2_id": "///A/2752/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3854, "atom1_serNum": 39846, "atom2_serNum": 53782, "donAcc_type": "standard", "distance": 3.438, "atom1_id": "///A/2028/O3'", "atom2_id": "///A/2751/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3855, "atom1_serNum": 39848, "atom2_serNum": 53027, "donAcc_type": "acceptable", "distance": 3.020, "atom1_id": "///A/2028/O2'", "atom2_id": "///A/2716/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3856, "atom1_serNum": 39848, "atom2_serNum": 53031, "donAcc_type": "acceptable", "distance": 3.110, "atom1_id": "///A/2028/O2'", "atom2_id": "///A/2716/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3857, "atom1_serNum": 39852, "atom2_serNum": 53027, "donAcc_type": "acceptable", "distance": 3.184, "atom1_id": "///A/2028/O2", "atom2_id": "///A/2716/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3858, "atom1_serNum": 39859, "atom2_serNum": 53782, "donAcc_type": "standard", "distance": 3.479, "atom1_id": "///A/2029/OP1", "atom2_id": "///A/2751/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3859, "atom1_serNum": 39878, "atom2_serNum": 53077, "donAcc_type": "standard", "distance": 3.790, "atom1_id": "///A/2029/N2", "atom2_id": "///A/2718/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3860, "atom1_serNum": 39973, "atom2_serNum": 40010, "donAcc_type": "standard", "distance": 3.883, "atom1_id": "///A/2034/OP2", "atom2_id": "///A/2035/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3861, "atom1_serNum": 40003, "atom2_serNum": 55847, "donAcc_type": "acceptable", "distance": 3.051, "atom1_id": "///A/2035/O2'", "atom2_id": "///A/2848/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3862, "atom1_serNum": 40003, "atom2_serNum": 55857, "donAcc_type": "acceptable", "distance": 2.982, "atom1_id": "///A/2035/O2'", "atom2_id": "///A/2848/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3863, "atom1_serNum": 40077, "atom2_serNum": 71821, "donAcc_type": "standard", "distance": 3.170, "atom1_id": "///A/2039/OP1", "atom2_id": "///N/42/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3864, "atom1_serNum": 40101, "atom2_serNum": 71641, "donAcc_type": "standard", "distance": 2.431, "atom1_id": "///A/2040/OP2", "atom2_id": "///N/16/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3865, "atom1_serNum": 40102, "atom2_serNum": 71641, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///A/2040/O5'", "atom2_id": "///N/16/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3866, "atom1_serNum": 40121, "atom2_serNum": 71641, "donAcc_type": "standard", "distance": 3.234, "atom1_id": "///A/2041/OP2", "atom2_id": "///N/16/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3867, "atom1_serNum": 40129, "atom2_serNum": 40145, "donAcc_type": "acceptable", "distance": 2.736, "atom1_id": "///A/2041/O2'", "atom2_id": "///A/2042/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3868, "atom1_serNum": 40143, "atom2_serNum": 72244, "donAcc_type": "standard", "distance": 3.243, "atom1_id": "///A/2042/OP1", "atom2_id": "///N/97/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3869, "atom1_serNum": 40143, "atom2_serNum": 72250, "donAcc_type": "questionable", "distance": 3.161, "atom1_id": "///A/2042/OP1", "atom2_id": "///N/97/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3870, "atom1_serNum": 40150, "atom2_serNum": 72230, "donAcc_type": "questionable", "distance": 3.174, "atom1_id": "///A/2042/O3'", "atom2_id": "///N/95/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3871, "atom1_serNum": 40159, "atom2_serNum": 51435, "donAcc_type": "standard", "distance": 3.064, "atom1_id": "///A/2042/N6", "atom2_id": "///A/2642/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3872, "atom1_serNum": 40160, "atom2_serNum": 51436, "donAcc_type": "standard", "distance": 2.964, "atom1_id": "///A/2042/N1", "atom2_id": "///A/2642/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3873, "atom1_serNum": 40174, "atom2_serNum": 40192, "donAcc_type": "acceptable", "distance": 2.729, "atom1_id": "///A/2043/O2'", "atom2_id": "///A/2044/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3874, "atom1_serNum": 40182, "atom2_serNum": 51435, "donAcc_type": "questionable", "distance": 2.965, "atom1_id": "///A/2043/N1", "atom2_id": "///A/2642/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3875, "atom1_serNum": 40218, "atom2_serNum": 75128, "donAcc_type": "acceptable", "distance": 3.024, "atom1_id": "///A/2045/O2'", "atom2_id": "///T/4/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3876, "atom1_serNum": 40238, "atom2_serNum": 40272, "donAcc_type": "acceptable", "distance": 3.249, "atom1_id": "///A/2046/O2'", "atom2_id": "///A/2048/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3877, "atom1_serNum": 40238, "atom2_serNum": 75154, "donAcc_type": "acceptable", "distance": 3.242, "atom1_id": "///A/2046/O2'", "atom2_id": "///T/7/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3878, "atom1_serNum": 40272, "atom2_serNum": 75152, "donAcc_type": "standard", "distance": 2.789, "atom1_id": "///A/2048/OP2", "atom2_id": "///T/6/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3879, "atom1_serNum": 40284, "atom2_serNum": 70062, "donAcc_type": "standard", "distance": 3.456, "atom1_id": "///A/2048/O2", "atom2_id": "///L/28/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3880, "atom1_serNum": 40287, "atom2_serNum": 40630, "donAcc_type": "standard", "distance": 3.561, "atom1_id": "///A/2048/O4", "atom2_id": "///A/2064/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3881, "atom1_serNum": 40300, "atom2_serNum": 40332, "donAcc_type": "acceptable", "distance": 3.360, "atom1_id": "///A/2049/O2'", "atom2_id": "///A/2050/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3882, "atom1_serNum": 40304, "atom2_serNum": 75150, "donAcc_type": "standard", "distance": 3.105, "atom1_id": "///A/2049/N7", "atom2_id": "///T/6/NE", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 3883, "atom1_serNum": 40307, "atom2_serNum": 40609, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///A/2049/N6", "atom2_id": "///A/2063/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3884, "atom1_serNum": 40308, "atom2_serNum": 40607, "donAcc_type": "standard", "distance": 2.989, "atom1_id": "///A/2049/N1", "atom2_id": "///A/2063/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3885, "atom1_serNum": 40313, "atom2_serNum": 75177, "donAcc_type": "acceptable", "distance": 2.717, "atom1_id": "///A/2050/OP1", "atom2_id": "///T/9/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3886, "atom1_serNum": 40314, "atom2_serNum": 75203, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///A/2050/OP2", "atom2_id": "///T/12/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3887, "atom1_serNum": 40315, "atom2_serNum": 75203, "donAcc_type": "standard", "distance": 2.664, "atom1_id": "///A/2050/O5'", "atom2_id": "///T/12/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3888, "atom1_serNum": 40337, "atom2_serNum": 75203, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///A/2051/OP2", "atom2_id": "///T/12/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3889, "atom1_serNum": 40345, "atom2_serNum": 51493, "donAcc_type": "acceptable", "distance": 3.501, "atom1_id": "///A/2051/O2'", "atom2_id": "///A/2645/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3890, "atom1_serNum": 40372, "atom2_serNum": 40740, "donAcc_type": "standard", "distance": 2.979, "atom1_id": "///A/2052/N6", "atom2_id": "///A/2069/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3891, "atom1_serNum": 40373, "atom2_serNum": 40738, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///A/2052/N1", "atom2_id": "///A/2069/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3892, "atom1_serNum": 40387, "atom2_serNum": 65810, "donAcc_type": "acceptable", "distance": 3.892, "atom1_id": "///A/2053/O2'", "atom2_id": "///G/80/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 3893, "atom1_serNum": 40391, "atom2_serNum": 40720, "donAcc_type": "standard", "distance": 2.727, "atom1_id": "///A/2053/O2", "atom2_id": "///A/2068/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3894, "atom1_serNum": 40392, "atom2_serNum": 40718, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/2053/N3", "atom2_id": "///A/2068/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3895, "atom1_serNum": 40394, "atom2_serNum": 40717, "donAcc_type": "standard", "distance": 2.977, "atom1_id": "///A/2053/N4", "atom2_id": "///A/2068/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3896, "atom1_serNum": 40411, "atom2_serNum": 40697, "donAcc_type": "standard", "distance": 2.760, "atom1_id": "///A/2054/O2", "atom2_id": "///A/2067/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3897, "atom1_serNum": 40412, "atom2_serNum": 40695, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///A/2054/N3", "atom2_id": "///A/2067/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3898, "atom1_serNum": 40414, "atom2_serNum": 40694, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///A/2054/N4", "atom2_id": "///A/2067/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3899, "atom1_serNum": 40432, "atom2_serNum": 40673, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/2055/N3", "atom2_id": "///A/2066/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3900, "atom1_serNum": 40434, "atom2_serNum": 40672, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///A/2055/O4", "atom2_id": "///A/2066/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3901, "atom1_serNum": 40454, "atom2_serNum": 40652, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///A/2056/O6", "atom2_id": "///A/2065/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3902, "atom1_serNum": 40455, "atom2_serNum": 40650, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///A/2056/N1", "atom2_id": "///A/2065/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3903, "atom1_serNum": 40457, "atom2_serNum": 40649, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///A/2056/N2", "atom2_id": "///A/2065/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3904, "atom1_serNum": 40474, "atom2_serNum": 40587, "donAcc_type": "standard", "distance": 3.069, "atom1_id": "///A/2057/O2", "atom2_id": "///A/2062/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3905, "atom1_serNum": 40475, "atom2_serNum": 40584, "donAcc_type": "standard", "distance": 3.151, "atom1_id": "///A/2057/N3", "atom2_id": "///A/2062/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3906, "atom1_serNum": 40498, "atom2_serNum": 40572, "donAcc_type": "standard", "distance": 2.425, "atom1_id": "///A/2058/N1", "atom2_id": "///A/2062/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3907, "atom1_serNum": 40513, "atom2_serNum": 40539, "donAcc_type": "acceptable", "distance": 2.812, "atom1_id": "///A/2059/O2'", "atom2_id": "///A/2060/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3908, "atom1_serNum": 40533, "atom2_serNum": 40567, "donAcc_type": "standard", "distance": 2.263, "atom1_id": "///A/2060/O3'", "atom2_id": "///A/2061/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3909, "atom1_serNum": 40580, "atom2_serNum": 40614, "donAcc_type": "acceptable", "distance": 2.302, "atom1_id": "///A/2062/O2'", "atom2_id": "///A/2064/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3910, "atom1_serNum": 40580, "atom2_serNum": 40652, "donAcc_type": "acceptable", "distance": 3.551, "atom1_id": "///A/2062/O2'", "atom2_id": "///A/2065/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3911, "atom1_serNum": 40602, "atom2_serNum": 40615, "donAcc_type": "acceptable", "distance": 2.491, "atom1_id": "///A/2063/O2'", "atom2_id": "///A/2064/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3912, "atom1_serNum": 40602, "atom2_serNum": 40618, "donAcc_type": "acceptable", "distance": 3.102, "atom1_id": "///A/2063/O2'", "atom2_id": "///A/2064/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3913, "atom1_serNum": 40614, "atom2_serNum": 40652, "donAcc_type": "standard", "distance": 3.515, "atom1_id": "///A/2064/OP2", "atom2_id": "///A/2065/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3914, "atom1_serNum": 40753, "atom2_serNum": 40769, "donAcc_type": "acceptable", "distance": 2.901, "atom1_id": "///A/2070/O2'", "atom2_id": "///A/2071/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3915, "atom1_serNum": 40786, "atom2_serNum": 54949, "donAcc_type": "acceptable", "distance": 2.922, "atom1_id": "///A/2072/OP1", "atom2_id": "///A/2806/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3916, "atom1_serNum": 40799, "atom2_serNum": 51695, "donAcc_type": "standard", "distance": 2.822, "atom1_id": "///A/2072/O2", "atom2_id": "///A/2654/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3917, "atom1_serNum": 40800, "atom2_serNum": 51693, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///A/2072/N3", "atom2_id": "///A/2654/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3918, "atom1_serNum": 40802, "atom2_serNum": 51692, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///A/2072/N4", "atom2_id": "///A/2654/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3919, "atom1_serNum": 40819, "atom2_serNum": 51672, "donAcc_type": "standard", "distance": 2.756, "atom1_id": "///A/2073/O2", "atom2_id": "///A/2653/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3920, "atom1_serNum": 40820, "atom2_serNum": 51670, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///A/2073/N3", "atom2_id": "///A/2653/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3921, "atom1_serNum": 40822, "atom2_serNum": 51669, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///A/2073/N4", "atom2_id": "///A/2653/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3922, "atom1_serNum": 40835, "atom2_serNum": 75267, "donAcc_type": "acceptable", "distance": 3.508, "atom1_id": "///A/2074/O2'", "atom2_id": "///T/19/ND1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3923, "atom1_serNum": 40839, "atom2_serNum": 51649, "donAcc_type": "standard", "distance": 2.827, "atom1_id": "///A/2074/O2", "atom2_id": "///A/2652/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3924, "atom1_serNum": 40840, "atom2_serNum": 51647, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/2074/N3", "atom2_id": "///A/2652/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3925, "atom1_serNum": 40842, "atom2_serNum": 51646, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/2074/N4", "atom2_id": "///A/2652/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3926, "atom1_serNum": 40862, "atom2_serNum": 51626, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///A/2075/O6", "atom2_id": "///A/2651/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3927, "atom1_serNum": 40863, "atom2_serNum": 51624, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///A/2075/N1", "atom2_id": "///A/2651/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3928, "atom1_serNum": 40865, "atom2_serNum": 51623, "donAcc_type": "standard", "distance": 2.761, "atom1_id": "///A/2075/N2", "atom2_id": "///A/2651/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3929, "atom1_serNum": 40878, "atom2_serNum": 55855, "donAcc_type": "acceptable", "distance": 3.096, "atom1_id": "///A/2076/O2'", "atom2_id": "///A/2848/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3930, "atom1_serNum": 40882, "atom2_serNum": 51606, "donAcc_type": "standard", "distance": 2.774, "atom1_id": "///A/2076/O2", "atom2_id": "///A/2650/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3931, "atom1_serNum": 40882, "atom2_serNum": 55854, "donAcc_type": "standard", "distance": 3.574, "atom1_id": "///A/2076/O2", "atom2_id": "///A/2848/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3932, "atom1_serNum": 40883, "atom2_serNum": 51604, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/2076/N3", "atom2_id": "///A/2650/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3933, "atom1_serNum": 40885, "atom2_serNum": 51603, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///A/2076/N4", "atom2_id": "///A/2650/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3934, "atom1_serNum": 40905, "atom2_serNum": 51583, "donAcc_type": "standard", "distance": 2.971, "atom1_id": "///A/2077/O6", "atom2_id": "///A/2649/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3935, "atom1_serNum": 40906, "atom2_serNum": 51581, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///A/2077/N1", "atom2_id": "///A/2649/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3936, "atom1_serNum": 40908, "atom2_serNum": 51580, "donAcc_type": "standard", "distance": 2.716, "atom1_id": "///A/2077/N2", "atom2_id": "///A/2649/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3937, "atom1_serNum": 40928, "atom2_serNum": 51563, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///A/2078/N6", "atom2_id": "///A/2648/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3938, "atom1_serNum": 40929, "atom2_serNum": 51561, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///A/2078/N1", "atom2_id": "///A/2648/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3939, "atom1_serNum": 40947, "atom2_serNum": 51543, "donAcc_type": "standard", "distance": 2.844, "atom1_id": "///A/2079/O2", "atom2_id": "///A/2647/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3940, "atom1_serNum": 40948, "atom2_serNum": 51541, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///A/2079/N3", "atom2_id": "///A/2647/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3941, "atom1_serNum": 40950, "atom2_serNum": 51540, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///A/2079/N4", "atom2_id": "///A/2647/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3942, "atom1_serNum": 40963, "atom2_serNum": 51458, "donAcc_type": "acceptable", "distance": 2.993, "atom1_id": "///A/2080/O2'", "atom2_id": "///A/2643/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3943, "atom1_serNum": 40970, "atom2_serNum": 51451, "donAcc_type": "acceptable", "distance": 2.971, "atom1_id": "///A/2080/N6", "atom2_id": "///A/2643/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3944, "atom1_serNum": 40992, "atom2_serNum": 51520, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///A/2081/O6", "atom2_id": "///A/2646/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3945, "atom1_serNum": 40993, "atom2_serNum": 51518, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///A/2081/N1", "atom2_id": "///A/2646/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3946, "atom1_serNum": 40995, "atom2_serNum": 51517, "donAcc_type": "standard", "distance": 2.727, "atom1_id": "///A/2081/N2", "atom2_id": "///A/2646/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3947, "atom1_serNum": 41015, "atom2_serNum": 51500, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///A/2082/O6", "atom2_id": "///A/2645/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3948, "atom1_serNum": 41016, "atom2_serNum": 51498, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///A/2082/N1", "atom2_id": "///A/2645/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3949, "atom1_serNum": 41018, "atom2_serNum": 51497, "donAcc_type": "standard", "distance": 2.783, "atom1_id": "///A/2082/N2", "atom2_id": "///A/2645/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3950, "atom1_serNum": 41038, "atom2_serNum": 51480, "donAcc_type": "standard", "distance": 2.940, "atom1_id": "///A/2083/N6", "atom2_id": "///A/2644/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3951, "atom1_serNum": 41039, "atom2_serNum": 51478, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///A/2083/N1", "atom2_id": "///A/2644/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3952, "atom1_serNum": 41080, "atom2_serNum": 51418, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///A/2085/O6", "atom2_id": "///A/2641/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3953, "atom1_serNum": 41081, "atom2_serNum": 51416, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///A/2085/N1", "atom2_id": "///A/2641/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3954, "atom1_serNum": 41083, "atom2_serNum": 51415, "donAcc_type": "standard", "distance": 2.774, "atom1_id": "///A/2085/N2", "atom2_id": "///A/2641/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3955, "atom1_serNum": 41096, "atom2_serNum": 41115, "donAcc_type": "acceptable", "distance": 2.946, "atom1_id": "///A/2086/O2'", "atom2_id": "///A/2087/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3956, "atom1_serNum": 41103, "atom2_serNum": 51398, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///A/2086/O6", "atom2_id": "///A/2640/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3957, "atom1_serNum": 41104, "atom2_serNum": 51396, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///A/2086/N1", "atom2_id": "///A/2640/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3958, "atom1_serNum": 41106, "atom2_serNum": 51395, "donAcc_type": "standard", "distance": 2.641, "atom1_id": "///A/2086/N2", "atom2_id": "///A/2640/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3959, "atom1_serNum": 41149, "atom2_serNum": 41216, "donAcc_type": "questionable", "distance": 2.948, "atom1_id": "///A/2088/N1", "atom2_id": "///A/2091/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3960, "atom1_serNum": 41154, "atom2_serNum": 63727, "donAcc_type": "standard", "distance": 2.791, "atom1_id": "///A/2089/OP1", "atom2_id": "///E/70/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 3961, "atom1_serNum": 41185, "atom2_serNum": 41196, "donAcc_type": "acceptable", "distance": 2.748, "atom1_id": "///A/2090/O2'", "atom2_id": "///A/2090/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3962, "atom1_serNum": 41185, "atom2_serNum": 41200, "donAcc_type": "acceptable", "distance": 3.079, "atom1_id": "///A/2090/O2'", "atom2_id": "///A/2091/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3963, "atom1_serNum": 41185, "atom2_serNum": 41201, "donAcc_type": "acceptable", "distance": 2.697, "atom1_id": "///A/2090/O2'", "atom2_id": "///A/2091/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3964, "atom1_serNum": 41195, "atom2_serNum": 41208, "donAcc_type": "acceptable", "distance": 2.338, "atom1_id": "///A/2090/N2", "atom2_id": "///A/2091/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3965, "atom1_serNum": 41195, "atom2_serNum": 41226, "donAcc_type": "standard", "distance": 2.859, "atom1_id": "///A/2090/N2", "atom2_id": "///A/2092/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3966, "atom1_serNum": 41208, "atom2_serNum": 41223, "donAcc_type": "acceptable", "distance": 2.751, "atom1_id": "///A/2091/O2'", "atom2_id": "///A/2092/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3967, "atom1_serNum": 41288, "atom2_serNum": 41324, "donAcc_type": "questionable", "distance": 3.249, "atom1_id": "///A/2095/O3'", "atom2_id": "///A/2097/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3968, "atom1_serNum": 41360, "atom2_serNum": 48884, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///A/2098/O6", "atom2_id": "///A/2471/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3969, "atom1_serNum": 41361, "atom2_serNum": 48882, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///A/2098/N1", "atom2_id": "///A/2471/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3970, "atom1_serNum": 41363, "atom2_serNum": 48881, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///A/2098/N2", "atom2_id": "///A/2471/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3971, "atom1_serNum": 41383, "atom2_serNum": 48864, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///A/2099/O6", "atom2_id": "///A/2470/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3972, "atom1_serNum": 41384, "atom2_serNum": 48862, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///A/2099/N1", "atom2_id": "///A/2470/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3973, "atom1_serNum": 41386, "atom2_serNum": 48861, "donAcc_type": "standard", "distance": 2.777, "atom1_id": "///A/2099/N2", "atom2_id": "///A/2470/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3974, "atom1_serNum": 41407, "atom2_serNum": 48799, "donAcc_type": "questionable", "distance": 3.002, "atom1_id": "///A/2100/N1", "atom2_id": "///A/2467/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3975, "atom1_serNum": 41428, "atom2_serNum": 48759, "donAcc_type": "questionable", "distance": 2.960, "atom1_id": "///A/2101/O6", "atom2_id": "///A/2465/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3976, "atom1_serNum": 41428, "atom2_serNum": 48760, "donAcc_type": "standard", "distance": 3.347, "atom1_id": "///A/2101/O6", "atom2_id": "///A/2465/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3977, "atom1_serNum": 41428, "atom2_serNum": 48782, "donAcc_type": "standard", "distance": 2.946, "atom1_id": "///A/2101/O6", "atom2_id": "///A/2466/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3978, "atom1_serNum": 41429, "atom2_serNum": 48760, "donAcc_type": "questionable", "distance": 3.178, "atom1_id": "///A/2101/N1", "atom2_id": "///A/2465/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3979, "atom1_serNum": 41429, "atom2_serNum": 48780, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///A/2101/N1", "atom2_id": "///A/2466/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3980, "atom1_serNum": 41431, "atom2_serNum": 48762, "donAcc_type": "questionable", "distance": 3.120, "atom1_id": "///A/2101/N2", "atom2_id": "///A/2465/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3981, "atom1_serNum": 41431, "atom2_serNum": 48779, "donAcc_type": "standard", "distance": 2.669, "atom1_id": "///A/2101/N2", "atom2_id": "///A/2466/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3982, "atom1_serNum": 41444, "atom2_serNum": 41460, "donAcc_type": "acceptable", "distance": 2.982, "atom1_id": "///A/2102/O2'", "atom2_id": "///A/2103/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3983, "atom1_serNum": 41448, "atom2_serNum": 48762, "donAcc_type": "standard", "distance": 2.432, "atom1_id": "///A/2102/O2", "atom2_id": "///A/2465/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3984, "atom1_serNum": 41448, "atom2_serNum": 51113, "donAcc_type": "acceptable", "distance": 3.130, "atom1_id": "///A/2102/O2", "atom2_id": "///A/2627/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3985, "atom1_serNum": 41449, "atom2_serNum": 48737, "donAcc_type": "standard", "distance": 3.552, "atom1_id": "///A/2102/N3", "atom2_id": "///A/2464/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3986, "atom1_serNum": 41449, "atom2_serNum": 48760, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///A/2102/N3", "atom2_id": "///A/2465/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3987, "atom1_serNum": 41451, "atom2_serNum": 48737, "donAcc_type": "questionable", "distance": 2.987, "atom1_id": "///A/2102/N4", "atom2_id": "///A/2464/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3988, "atom1_serNum": 41451, "atom2_serNum": 48759, "donAcc_type": "standard", "distance": 3.527, "atom1_id": "///A/2102/N4", "atom2_id": "///A/2465/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 3989, "atom1_serNum": 41464, "atom2_serNum": 41480, "donAcc_type": "acceptable", "distance": 2.622, "atom1_id": "///A/2103/O2'", "atom2_id": "///A/2104/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3990, "atom1_serNum": 41464, "atom2_serNum": 51090, "donAcc_type": "acceptable", "distance": 2.657, "atom1_id": "///A/2103/O2'", "atom2_id": "///A/2626/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3991, "atom1_serNum": 41464, "atom2_serNum": 51109, "donAcc_type": "acceptable", "distance": 2.638, "atom1_id": "///A/2103/O2'", "atom2_id": "///A/2627/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3992, "atom1_serNum": 41468, "atom2_serNum": 51113, "donAcc_type": "acceptable", "distance": 2.332, "atom1_id": "///A/2103/O2", "atom2_id": "///A/2627/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3993, "atom1_serNum": 41469, "atom2_serNum": 48738, "donAcc_type": "standard", "distance": 2.764, "atom1_id": "///A/2103/N3", "atom2_id": "///A/2464/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 3994, "atom1_serNum": 41484, "atom2_serNum": 51100, "donAcc_type": "acceptable", "distance": 2.970, "atom1_id": "///A/2104/O2'", "atom2_id": "///A/2626/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3995, "atom1_serNum": 41484, "atom2_serNum": 51101, "donAcc_type": "acceptable", "distance": 2.151, "atom1_id": "///A/2104/O2'", "atom2_id": "///A/2626/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3996, "atom1_serNum": 41488, "atom2_serNum": 51123, "donAcc_type": "questionable", "distance": 2.756, "atom1_id": "///A/2104/O2", "atom2_id": "///A/2627/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 3997, "atom1_serNum": 41504, "atom2_serNum": 41538, "donAcc_type": "acceptable", "distance": 2.726, "atom1_id": "///A/2105/O2'", "atom2_id": "///A/2107/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3998, "atom1_serNum": 41524, "atom2_serNum": 48708, "donAcc_type": "acceptable", "distance": 2.931, "atom1_id": "///A/2106/O2'", "atom2_id": "///A/2463/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 3999, "atom1_serNum": 41531, "atom2_serNum": 45087, "donAcc_type": "standard", "distance": 2.767, "atom1_id": "///A/2106/N6", "atom2_id": "///A/2272/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4000, "atom1_serNum": 41532, "atom2_serNum": 45085, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///A/2106/N1", "atom2_id": "///A/2272/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4001, "atom1_serNum": 41534, "atom2_serNum": 48708, "donAcc_type": "acceptable", "distance": 2.832, "atom1_id": "///A/2106/N3", "atom2_id": "///A/2463/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4002, "atom1_serNum": 41542, "atom2_serNum": 48686, "donAcc_type": "acceptable", "distance": 3.019, "atom1_id": "///A/2107/O4'", "atom2_id": "///A/2462/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4003, "atom1_serNum": 41546, "atom2_serNum": 41559, "donAcc_type": "acceptable", "distance": 2.915, "atom1_id": "///A/2107/O2'", "atom2_id": "///A/2108/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4004, "atom1_serNum": 41546, "atom2_serNum": 41562, "donAcc_type": "acceptable", "distance": 2.496, "atom1_id": "///A/2107/O2'", "atom2_id": "///A/2108/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4005, "atom1_serNum": 41546, "atom2_serNum": 48686, "donAcc_type": "acceptable", "distance": 3.113, "atom1_id": "///A/2107/O2'", "atom2_id": "///A/2462/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4006, "atom1_serNum": 41550, "atom2_serNum": 45067, "donAcc_type": "standard", "distance": 2.768, "atom1_id": "///A/2107/O2", "atom2_id": "///A/2271/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4007, "atom1_serNum": 41551, "atom2_serNum": 45065, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///A/2107/N3", "atom2_id": "///A/2271/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4008, "atom1_serNum": 41553, "atom2_serNum": 45064, "donAcc_type": "standard", "distance": 3.124, "atom1_id": "///A/2107/N4", "atom2_id": "///A/2271/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4009, "atom1_serNum": 41566, "atom2_serNum": 41577, "donAcc_type": "acceptable", "distance": 2.207, "atom1_id": "///A/2108/O2'", "atom2_id": "///A/2109/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4010, "atom1_serNum": 41566, "atom2_serNum": 41582, "donAcc_type": "acceptable", "distance": 2.941, "atom1_id": "///A/2108/O2'", "atom2_id": "///A/2109/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4011, "atom1_serNum": 41570, "atom2_serNum": 45067, "donAcc_type": "standard", "distance": 2.838, "atom1_id": "///A/2108/O2", "atom2_id": "///A/2271/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4012, "atom1_serNum": 41571, "atom2_serNum": 45043, "donAcc_type": "standard", "distance": 2.840, "atom1_id": "///A/2108/N3", "atom2_id": "///A/2270/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4013, "atom1_serNum": 41573, "atom2_serNum": 45042, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///A/2108/O4", "atom2_id": "///A/2270/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4014, "atom1_serNum": 41593, "atom2_serNum": 45022, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///A/2109/O6", "atom2_id": "///A/2269/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4015, "atom1_serNum": 41594, "atom2_serNum": 45020, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///A/2109/N1", "atom2_id": "///A/2269/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4016, "atom1_serNum": 41596, "atom2_serNum": 45019, "donAcc_type": "standard", "distance": 2.701, "atom1_id": "///A/2109/N2", "atom2_id": "///A/2269/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4017, "atom1_serNum": 41613, "atom2_serNum": 45002, "donAcc_type": "standard", "distance": 2.634, "atom1_id": "///A/2110/O2", "atom2_id": "///A/2268/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4018, "atom1_serNum": 41614, "atom2_serNum": 45000, "donAcc_type": "standard", "distance": 2.852, "atom1_id": "///A/2110/N3", "atom2_id": "///A/2268/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4019, "atom1_serNum": 41616, "atom2_serNum": 44950, "donAcc_type": "standard", "distance": 2.659, "atom1_id": "///A/2110/N4", "atom2_id": "///A/2266/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4020, "atom1_serNum": 41616, "atom2_serNum": 44999, "donAcc_type": "standard", "distance": 2.946, "atom1_id": "///A/2110/N4", "atom2_id": "///A/2268/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4021, "atom1_serNum": 41622, "atom2_serNum": 44954, "donAcc_type": "standard", "distance": 3.211, "atom1_id": "///A/2111/O5'", "atom2_id": "///A/2266/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4022, "atom1_serNum": 41625, "atom2_serNum": 45002, "donAcc_type": "standard", "distance": 3.013, "atom1_id": "///A/2111/O4'", "atom2_id": "///A/2268/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4023, "atom1_serNum": 41633, "atom2_serNum": 44946, "donAcc_type": "acceptable", "distance": 2.609, "atom1_id": "///A/2111/N7", "atom2_id": "///A/2266/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4024, "atom1_serNum": 41636, "atom2_serNum": 44944, "donAcc_type": "standard", "distance": 2.319, "atom1_id": "///A/2111/N6", "atom2_id": "///A/2266/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4025, "atom1_serNum": 41636, "atom2_serNum": 44946, "donAcc_type": "acceptable", "distance": 2.542, "atom1_id": "///A/2111/N6", "atom2_id": "///A/2266/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4026, "atom1_serNum": 41636, "atom2_serNum": 44960, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///A/2111/N6", "atom2_id": "///A/2267/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4027, "atom1_serNum": 41643, "atom2_serNum": 44956, "donAcc_type": "standard", "distance": 3.260, "atom1_id": "///A/2112/OP2", "atom2_id": "///A/2266/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4028, "atom1_serNum": 41655, "atom2_serNum": 44956, "donAcc_type": "standard", "distance": 2.434, "atom1_id": "///A/2112/N7", "atom2_id": "///A/2266/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4029, "atom1_serNum": 41658, "atom2_serNum": 44926, "donAcc_type": "acceptable", "distance": 2.805, "atom1_id": "///A/2112/O6", "atom2_id": "///A/2265/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4030, "atom1_serNum": 41678, "atom2_serNum": 44913, "donAcc_type": "standard", "distance": 2.773, "atom1_id": "///A/2113/O2", "atom2_id": "///A/2264/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4031, "atom1_serNum": 41679, "atom2_serNum": 44911, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///A/2113/N3", "atom2_id": "///A/2264/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4032, "atom1_serNum": 41681, "atom2_serNum": 44910, "donAcc_type": "standard", "distance": 2.828, "atom1_id": "///A/2113/N4", "atom2_id": "///A/2264/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4033, "atom1_serNum": 41681, "atom2_serNum": 44930, "donAcc_type": "standard", "distance": 3.412, "atom1_id": "///A/2113/N4", "atom2_id": "///A/2265/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4034, "atom1_serNum": 41698, "atom2_serNum": 44890, "donAcc_type": "standard", "distance": 2.637, "atom1_id": "///A/2114/O2", "atom2_id": "///A/2263/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4035, "atom1_serNum": 41699, "atom2_serNum": 44888, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///A/2114/N3", "atom2_id": "///A/2263/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4036, "atom1_serNum": 41701, "atom2_serNum": 41721, "donAcc_type": "standard", "distance": 2.386, "atom1_id": "///A/2114/N4", "atom2_id": "///A/2115/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4037, "atom1_serNum": 41701, "atom2_serNum": 44887, "donAcc_type": "standard", "distance": 2.981, "atom1_id": "///A/2114/N4", "atom2_id": "///A/2263/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4038, "atom1_serNum": 41705, "atom2_serNum": 61774, "donAcc_type": "standard", "distance": 2.796, "atom1_id": "///A/2115/OP1", "atom2_id": "///C/262/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4039, "atom1_serNum": 41714, "atom2_serNum": 41727, "donAcc_type": "acceptable", "distance": 3.160, "atom1_id": "///A/2115/O2'", "atom2_id": "///A/2116/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4040, "atom1_serNum": 41719, "atom2_serNum": 44866, "donAcc_type": "standard", "distance": 3.327, "atom1_id": "///A/2115/N3", "atom2_id": "///A/2262/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4041, "atom1_serNum": 41734, "atom2_serNum": 41750, "donAcc_type": "acceptable", "distance": 2.780, "atom1_id": "///A/2116/O2'", "atom2_id": "///A/2117/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4042, "atom1_serNum": 41741, "atom2_serNum": 44845, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///A/2116/O6", "atom2_id": "///A/2261/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4043, "atom1_serNum": 41742, "atom2_serNum": 44843, "donAcc_type": "standard", "distance": 2.827, "atom1_id": "///A/2116/N1", "atom2_id": "///A/2261/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4044, "atom1_serNum": 41744, "atom2_serNum": 44842, "donAcc_type": "standard", "distance": 2.682, "atom1_id": "///A/2116/N2", "atom2_id": "///A/2261/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4045, "atom1_serNum": 41764, "atom2_serNum": 44825, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///A/2117/N6", "atom2_id": "///A/2260/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4046, "atom1_serNum": 41765, "atom2_serNum": 44823, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///A/2117/N1", "atom2_id": "///A/2260/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4047, "atom1_serNum": 41783, "atom2_serNum": 44803, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///A/2118/O2", "atom2_id": "///A/2259/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4048, "atom1_serNum": 41783, "atom2_serNum": 44805, "donAcc_type": "standard", "distance": 3.127, "atom1_id": "///A/2118/O2", "atom2_id": "///A/2259/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4049, "atom1_serNum": 41784, "atom2_serNum": 44802, "donAcc_type": "standard", "distance": 3.490, "atom1_id": "///A/2118/N3", "atom2_id": "///A/2259/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4050, "atom1_serNum": 41799, "atom2_serNum": 41814, "donAcc_type": "acceptable", "distance": 2.613, "atom1_id": "///A/2119/O2'", "atom2_id": "///A/2120/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4051, "atom1_serNum": 41799, "atom2_serNum": 41817, "donAcc_type": "acceptable", "distance": 2.903, "atom1_id": "///A/2119/O2'", "atom2_id": "///A/2120/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4052, "atom1_serNum": 41806, "atom2_serNum": 44782, "donAcc_type": "standard", "distance": 3.014, "atom1_id": "///A/2119/N6", "atom2_id": "///A/2258/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4053, "atom1_serNum": 41807, "atom2_serNum": 44780, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///A/2119/N1", "atom2_id": "///A/2258/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4054, "atom1_serNum": 41812, "atom2_serNum": 41852, "donAcc_type": "questionable", "distance": 2.794, "atom1_id": "///A/2120/OP1", "atom2_id": "///A/2122/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4055, "atom1_serNum": 41813, "atom2_serNum": 41841, "donAcc_type": "acceptable", "distance": 2.124, "atom1_id": "///A/2120/OP2", "atom2_id": "///A/2121/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4056, "atom1_serNum": 41825, "atom2_serNum": 44760, "donAcc_type": "standard", "distance": 3.135, "atom1_id": "///A/2120/O2", "atom2_id": "///A/2257/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4057, "atom1_serNum": 41826, "atom2_serNum": 44759, "donAcc_type": "standard", "distance": 2.780, "atom1_id": "///A/2120/N3", "atom2_id": "///A/2257/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4058, "atom1_serNum": 41832, "atom2_serNum": 44132, "donAcc_type": "acceptable", "distance": 2.706, "atom1_id": "///A/2121/OP1", "atom2_id": "///A/2228/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4059, "atom1_serNum": 41846, "atom2_serNum": 44702, "donAcc_type": "standard", "distance": 3.217, "atom1_id": "///A/2121/N3", "atom2_id": "///A/2255/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4060, "atom1_serNum": 41848, "atom2_serNum": 44734, "donAcc_type": "questionable", "distance": 3.289, "atom1_id": "///A/2121/O4", "atom2_id": "///A/2256/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4061, "atom1_serNum": 41865, "atom2_serNum": 44688, "donAcc_type": "acceptable", "distance": 3.354, "atom1_id": "///A/2122/N7", "atom2_id": "///A/2254/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4062, "atom1_serNum": 41868, "atom2_serNum": 44077, "donAcc_type": "standard", "distance": 2.818, "atom1_id": "///A/2122/O6", "atom2_id": "///A/2225/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4063, "atom1_serNum": 41869, "atom2_serNum": 44075, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///A/2122/N1", "atom2_id": "///A/2225/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4064, "atom1_serNum": 41871, "atom2_serNum": 44074, "donAcc_type": "standard", "distance": 2.771, "atom1_id": "///A/2122/N2", "atom2_id": "///A/2225/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4065, "atom1_serNum": 41872, "atom2_serNum": 44114, "donAcc_type": "questionable", "distance": 3.428, "atom1_id": "///A/2122/N3", "atom2_id": "///A/2227/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4066, "atom1_serNum": 41880, "atom2_serNum": 44117, "donAcc_type": "standard", "distance": 2.529, "atom1_id": "///A/2123/O4'", "atom2_id": "///A/2227/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4067, "atom1_serNum": 41891, "atom2_serNum": 44054, "donAcc_type": "standard", "distance": 2.716, "atom1_id": "///A/2123/N6", "atom2_id": "///A/2224/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4068, "atom1_serNum": 41913, "atom2_serNum": 44037, "donAcc_type": "standard", "distance": 2.793, "atom1_id": "///A/2124/N6", "atom2_id": "///A/2223/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4069, "atom1_serNum": 41913, "atom2_serNum": 44054, "donAcc_type": "standard", "distance": 3.128, "atom1_id": "///A/2124/N6", "atom2_id": "///A/2224/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4070, "atom1_serNum": 41914, "atom2_serNum": 44035, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///A/2124/N1", "atom2_id": "///A/2223/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4071, "atom1_serNum": 41914, "atom2_serNum": 44050, "donAcc_type": "acceptable", "distance": 2.258, "atom1_id": "///A/2124/N1", "atom2_id": "///A/2224/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4072, "atom1_serNum": 41933, "atom2_serNum": 44015, "donAcc_type": "standard", "distance": 3.172, "atom1_id": "///A/2125/N3", "atom2_id": "///A/2222/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4073, "atom1_serNum": 41935, "atom2_serNum": 44017, "donAcc_type": "standard", "distance": 2.732, "atom1_id": "///A/2125/O4", "atom2_id": "///A/2222/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4074, "atom1_serNum": 41955, "atom2_serNum": 43997, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/2126/O6", "atom2_id": "///A/2221/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4075, "atom1_serNum": 41956, "atom2_serNum": 43995, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///A/2126/N1", "atom2_id": "///A/2221/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4076, "atom1_serNum": 41958, "atom2_serNum": 43994, "donAcc_type": "standard", "distance": 2.729, "atom1_id": "///A/2126/N2", "atom2_id": "///A/2221/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4077, "atom1_serNum": 41976, "atom2_serNum": 43976, "donAcc_type": "standard", "distance": 2.755, "atom1_id": "///A/2127/N3", "atom2_id": "///A/2220/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4078, "atom1_serNum": 41978, "atom2_serNum": 43975, "donAcc_type": "standard", "distance": 2.966, "atom1_id": "///A/2127/O4", "atom2_id": "///A/2220/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4079, "atom1_serNum": 41991, "atom2_serNum": 42002, "donAcc_type": "acceptable", "distance": 2.726, "atom1_id": "///A/2128/O2'", "atom2_id": "///A/2129/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4080, "atom1_serNum": 41995, "atom2_serNum": 43955, "donAcc_type": "standard", "distance": 2.634, "atom1_id": "///A/2128/O2", "atom2_id": "///A/2219/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4081, "atom1_serNum": 41996, "atom2_serNum": 43953, "donAcc_type": "questionable", "distance": 2.487, "atom1_id": "///A/2128/N3", "atom2_id": "///A/2219/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4082, "atom1_serNum": 41998, "atom2_serNum": 43952, "donAcc_type": "questionable", "distance": 2.101, "atom1_id": "///A/2128/O4", "atom2_id": "///A/2219/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4083, "atom1_serNum": 42018, "atom2_serNum": 43932, "donAcc_type": "questionable", "distance": 2.092, "atom1_id": "///A/2129/O6", "atom2_id": "///A/2218/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4084, "atom1_serNum": 42019, "atom2_serNum": 43930, "donAcc_type": "questionable", "distance": 2.318, "atom1_id": "///A/2129/N1", "atom2_id": "///A/2218/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4085, "atom1_serNum": 42021, "atom2_serNum": 43929, "donAcc_type": "standard", "distance": 2.285, "atom1_id": "///A/2129/N2", "atom2_id": "///A/2218/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4086, "atom1_serNum": 42041, "atom2_serNum": 43912, "donAcc_type": "questionable", "distance": 2.846, "atom1_id": "///A/2130/O6", "atom2_id": "///A/2217/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4087, "atom1_serNum": 42042, "atom2_serNum": 43910, "donAcc_type": "questionable", "distance": 2.705, "atom1_id": "///A/2130/N1", "atom2_id": "///A/2217/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4088, "atom1_serNum": 42044, "atom2_serNum": 43909, "donAcc_type": "standard", "distance": 2.295, "atom1_id": "///A/2130/N2", "atom2_id": "///A/2217/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4089, "atom1_serNum": 42062, "atom2_serNum": 43891, "donAcc_type": "standard", "distance": 2.833, "atom1_id": "///A/2131/N3", "atom2_id": "///A/2216/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4090, "atom1_serNum": 42064, "atom2_serNum": 43890, "donAcc_type": "standard", "distance": 3.014, "atom1_id": "///A/2131/O4", "atom2_id": "///A/2216/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4091, "atom1_serNum": 42084, "atom2_serNum": 43870, "donAcc_type": "standard", "distance": 3.014, "atom1_id": "///A/2132/N6", "atom2_id": "///A/2215/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4092, "atom1_serNum": 42085, "atom2_serNum": 43868, "donAcc_type": "standard", "distance": 2.728, "atom1_id": "///A/2132/N1", "atom2_id": "///A/2215/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4093, "atom1_serNum": 42103, "atom2_serNum": 43850, "donAcc_type": "standard", "distance": 2.687, "atom1_id": "///A/2133/O2", "atom2_id": "///A/2214/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4094, "atom1_serNum": 42104, "atom2_serNum": 43848, "donAcc_type": "standard", "distance": 2.859, "atom1_id": "///A/2133/N3", "atom2_id": "///A/2214/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4095, "atom1_serNum": 42106, "atom2_serNum": 43847, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///A/2133/N4", "atom2_id": "///A/2214/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4096, "atom1_serNum": 42126, "atom2_serNum": 43827, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/2134/N6", "atom2_id": "///A/2213/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4097, "atom1_serNum": 42127, "atom2_serNum": 43825, "donAcc_type": "standard", "distance": 2.690, "atom1_id": "///A/2134/N1", "atom2_id": "///A/2213/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4098, "atom1_serNum": 42148, "atom2_serNum": 43807, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///A/2135/O6", "atom2_id": "///A/2212/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4099, "atom1_serNum": 42149, "atom2_serNum": 43805, "donAcc_type": "standard", "distance": 2.853, "atom1_id": "///A/2135/N1", "atom2_id": "///A/2212/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4100, "atom1_serNum": 42151, "atom2_serNum": 43804, "donAcc_type": "standard", "distance": 2.704, "atom1_id": "///A/2135/N2", "atom2_id": "///A/2212/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4101, "atom1_serNum": 42168, "atom2_serNum": 43787, "donAcc_type": "standard", "distance": 2.677, "atom1_id": "///A/2136/O2", "atom2_id": "///A/2211/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4102, "atom1_serNum": 42169, "atom2_serNum": 43785, "donAcc_type": "standard", "distance": 2.838, "atom1_id": "///A/2136/N3", "atom2_id": "///A/2211/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4103, "atom1_serNum": 42171, "atom2_serNum": 43784, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///A/2136/N4", "atom2_id": "///A/2211/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4104, "atom1_serNum": 42188, "atom2_serNum": 43762, "donAcc_type": "standard", "distance": 2.553, "atom1_id": "///A/2137/O2", "atom2_id": "///A/2210/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4105, "atom1_serNum": 42188, "atom2_serNum": 43764, "donAcc_type": "standard", "distance": 2.161, "atom1_id": "///A/2137/O2", "atom2_id": "///A/2210/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4106, "atom1_serNum": 42195, "atom2_serNum": 43091, "donAcc_type": "acceptable", "distance": 2.380, "atom1_id": "///A/2138/OP1", "atom2_id": "///A/2179/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4107, "atom1_serNum": 42208, "atom2_serNum": 43739, "donAcc_type": "standard", "distance": 3.191, "atom1_id": "///A/2138/O2", "atom2_id": "///A/2209/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4108, "atom1_serNum": 42217, "atom2_serNum": 42423, "donAcc_type": "questionable", "distance": 3.196, "atom1_id": "///A/2139/O5'", "atom2_id": "///A/2148/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4109, "atom1_serNum": 42224, "atom2_serNum": 42419, "donAcc_type": "acceptable", "distance": 3.394, "atom1_id": "///A/2139/O2'", "atom2_id": "///A/2148/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4110, "atom1_serNum": 42231, "atom2_serNum": 43721, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///A/2139/O6", "atom2_id": "///A/2208/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4111, "atom1_serNum": 42232, "atom2_serNum": 43719, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///A/2139/N1", "atom2_id": "///A/2208/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4112, "atom1_serNum": 42234, "atom2_serNum": 43718, "donAcc_type": "standard", "distance": 2.715, "atom1_id": "///A/2139/N2", "atom2_id": "///A/2208/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4113, "atom1_serNum": 42238, "atom2_serNum": 42274, "donAcc_type": "standard", "distance": 2.390, "atom1_id": "///A/2140/OP1", "atom2_id": "///A/2141/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4114, "atom1_serNum": 42239, "atom2_serNum": 42993, "donAcc_type": "standard", "distance": 3.318, "atom1_id": "///A/2140/OP2", "atom2_id": "///A/2174/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4115, "atom1_serNum": 42247, "atom2_serNum": 42260, "donAcc_type": "acceptable", "distance": 2.426, "atom1_id": "///A/2140/O2'", "atom2_id": "///A/2141/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4116, "atom1_serNum": 42247, "atom2_serNum": 42397, "donAcc_type": "acceptable", "distance": 2.765, "atom1_id": "///A/2140/O2'", "atom2_id": "///A/2147/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4117, "atom1_serNum": 42247, "atom2_serNum": 42399, "donAcc_type": "acceptable", "distance": 2.897, "atom1_id": "///A/2140/O2'", "atom2_id": "///A/2147/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4118, "atom1_serNum": 42251, "atom2_serNum": 42399, "donAcc_type": "acceptable", "distance": 2.435, "atom1_id": "///A/2140/O2", "atom2_id": "///A/2147/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4119, "atom1_serNum": 42254, "atom2_serNum": 43033, "donAcc_type": "standard", "distance": 2.466, "atom1_id": "///A/2140/O4", "atom2_id": "///A/2176/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4120, "atom1_serNum": 42254, "atom2_serNum": 43058, "donAcc_type": "standard", "distance": 3.520, "atom1_id": "///A/2140/O4", "atom2_id": "///A/2177/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4121, "atom1_serNum": 42259, "atom2_serNum": 42986, "donAcc_type": "acceptable", "distance": 2.720, "atom1_id": "///A/2141/OP2", "atom2_id": "///A/2174/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4122, "atom1_serNum": 42267, "atom2_serNum": 42281, "donAcc_type": "acceptable", "distance": 2.930, "atom1_id": "///A/2141/O2'", "atom2_id": "///A/2142/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4123, "atom1_serNum": 42267, "atom2_serNum": 42410, "donAcc_type": "acceptable", "distance": 3.063, "atom1_id": "///A/2141/O2'", "atom2_id": "///A/2148/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4124, "atom1_serNum": 42267, "atom2_serNum": 42412, "donAcc_type": "acceptable", "distance": 3.121, "atom1_id": "///A/2141/O2'", "atom2_id": "///A/2148/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4125, "atom1_serNum": 42281, "atom2_serNum": 42410, "donAcc_type": "questionable", "distance": 2.714, "atom1_id": "///A/2142/OP2", "atom2_id": "///A/2148/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4126, "atom1_serNum": 42281, "atom2_serNum": 43532, "donAcc_type": "questionable", "distance": 2.654, "atom1_id": "///A/2142/OP2", "atom2_id": "///A/2199/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4127, "atom1_serNum": 42282, "atom2_serNum": 43475, "donAcc_type": "questionable", "distance": 3.070, "atom1_id": "///A/2142/O5'", "atom2_id": "///A/2197/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4128, "atom1_serNum": 42293, "atom2_serNum": 77360, "donAcc_type": "standard", "distance": 3.535, "atom1_id": "///A/2142/O2", "atom2_id": "///W/109/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4129, "atom1_serNum": 42300, "atom2_serNum": 43470, "donAcc_type": "questionable", "distance": 2.776, "atom1_id": "///A/2143/OP1", "atom2_id": "///A/2197/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4130, "atom1_serNum": 42301, "atom2_serNum": 42390, "donAcc_type": "questionable", "distance": 2.698, "atom1_id": "///A/2143/OP2", "atom2_id": "///A/2147/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4131, "atom1_serNum": 42309, "atom2_serNum": 42322, "donAcc_type": "acceptable", "distance": 2.647, "atom1_id": "///A/2143/O2'", "atom2_id": "///A/2144/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4132, "atom1_serNum": 42309, "atom2_serNum": 43483, "donAcc_type": "acceptable", "distance": 3.142, "atom1_id": "///A/2143/O2'", "atom2_id": "///A/2197/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4133, "atom1_serNum": 42309, "atom2_serNum": 43486, "donAcc_type": "acceptable", "distance": 2.125, "atom1_id": "///A/2143/O2'", "atom2_id": "///A/2197/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4134, "atom1_serNum": 42316, "atom2_serNum": 42411, "donAcc_type": "standard", "distance": 2.697, "atom1_id": "///A/2143/N6", "atom2_id": "///A/2148/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4135, "atom1_serNum": 42331, "atom2_serNum": 42345, "donAcc_type": "acceptable", "distance": 2.786, "atom1_id": "///A/2144/O2'", "atom2_id": "///A/2145/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4136, "atom1_serNum": 42331, "atom2_serNum": 43423, "donAcc_type": "acceptable", "distance": 2.354, "atom1_id": "///A/2144/O2'", "atom2_id": "///A/2194/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4137, "atom1_serNum": 42331, "atom2_serNum": 43446, "donAcc_type": "acceptable", "distance": 2.457, "atom1_id": "///A/2144/O2'", "atom2_id": "///A/2195/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4138, "atom1_serNum": 42335, "atom2_serNum": 42391, "donAcc_type": "questionable", "distance": 2.871, "atom1_id": "///A/2144/N7", "atom2_id": "///A/2147/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4139, "atom1_serNum": 42338, "atom2_serNum": 42392, "donAcc_type": "questionable", "distance": 2.749, "atom1_id": "///A/2144/O6", "atom2_id": "///A/2147/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4140, "atom1_serNum": 42345, "atom2_serNum": 43421, "donAcc_type": "standard", "distance": 3.115, "atom1_id": "///A/2145/OP1", "atom2_id": "///A/2194/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4141, "atom1_serNum": 42345, "atom2_serNum": 43423, "donAcc_type": "standard", "distance": 3.206, "atom1_id": "///A/2145/OP1", "atom2_id": "///A/2194/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4142, "atom1_serNum": 42346, "atom2_serNum": 43342, "donAcc_type": "questionable", "distance": 3.346, "atom1_id": "///A/2145/OP2", "atom2_id": "///A/2191/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4143, "atom1_serNum": 42385, "atom2_serNum": 43082, "donAcc_type": "questionable", "distance": 3.289, "atom1_id": "///A/2146/N1", "atom2_id": "///A/2179/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4144, "atom1_serNum": 42399, "atom2_serNum": 42403, "donAcc_type": "acceptable", "distance": 2.981, "atom1_id": "///A/2147/O2'", "atom2_id": "///A/2147/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4145, "atom1_serNum": 42403, "atom2_serNum": 43036, "donAcc_type": "questionable", "distance": 3.066, "atom1_id": "///A/2147/O2", "atom2_id": "///A/2176/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4146, "atom1_serNum": 42406, "atom2_serNum": 43026, "donAcc_type": "acceptable", "distance": 2.522, "atom1_id": "///A/2147/O4", "atom2_id": "///A/2176/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4147, "atom1_serNum": 42419, "atom2_serNum": 42433, "donAcc_type": "acceptable", "distance": 2.660, "atom1_id": "///A/2148/O2'", "atom2_id": "///A/2149/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4148, "atom1_serNum": 42426, "atom2_serNum": 43071, "donAcc_type": "acceptable", "distance": 2.303, "atom1_id": "///A/2148/N6", "atom2_id": "///A/2178/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4149, "atom1_serNum": 42427, "atom2_serNum": 43071, "donAcc_type": "acceptable", "distance": 3.358, "atom1_id": "///A/2148/N1", "atom2_id": "///A/2178/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4150, "atom1_serNum": 42448, "atom2_serNum": 43701, "donAcc_type": "standard", "distance": 2.837, "atom1_id": "///A/2149/O6", "atom2_id": "///A/2207/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4151, "atom1_serNum": 42449, "atom2_serNum": 43699, "donAcc_type": "standard", "distance": 2.817, "atom1_id": "///A/2149/N1", "atom2_id": "///A/2207/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4152, "atom1_serNum": 42451, "atom2_serNum": 43698, "donAcc_type": "standard", "distance": 2.704, "atom1_id": "///A/2149/N2", "atom2_id": "///A/2207/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4153, "atom1_serNum": 42471, "atom2_serNum": 43681, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///A/2150/O6", "atom2_id": "///A/2206/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4154, "atom1_serNum": 42472, "atom2_serNum": 43679, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///A/2150/N1", "atom2_id": "///A/2206/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4155, "atom1_serNum": 42474, "atom2_serNum": 43678, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///A/2150/N2", "atom2_id": "///A/2206/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4156, "atom1_serNum": 42487, "atom2_serNum": 42499, "donAcc_type": "acceptable", "distance": 2.490, "atom1_id": "///A/2151/O2'", "atom2_id": "///A/2152/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4157, "atom1_serNum": 42492, "atom2_serNum": 43660, "donAcc_type": "standard", "distance": 3.189, "atom1_id": "///A/2151/N3", "atom2_id": "///A/2205/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4158, "atom1_serNum": 42507, "atom2_serNum": 42520, "donAcc_type": "acceptable", "distance": 2.457, "atom1_id": "///A/2152/O2'", "atom2_id": "///A/2153/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4159, "atom1_serNum": 42515, "atom2_serNum": 43639, "donAcc_type": "questionable", "distance": 3.273, "atom1_id": "///A/2152/N1", "atom2_id": "///A/2204/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4160, "atom1_serNum": 42517, "atom2_serNum": 80226, "donAcc_type": "questionable", "distance": 3.380, "atom1_id": "///A/2152/N3", "atom2_id": "///Y/43/OE2", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 4161, "atom1_serNum": 42529, "atom2_serNum": 42544, "donAcc_type": "acceptable", "distance": 2.886, "atom1_id": "///A/2153/O2'", "atom2_id": "///A/2154/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4162, "atom1_serNum": 42539, "atom2_serNum": 43541, "donAcc_type": "standard", "distance": 2.611, "atom1_id": "///A/2153/N2", "atom2_id": "///A/2200/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4163, "atom1_serNum": 42552, "atom2_serNum": 42588, "donAcc_type": "acceptable", "distance": 3.266, "atom1_id": "///A/2154/O2'", "atom2_id": "///A/2156/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4164, "atom1_serNum": 42560, "atom2_serNum": 43391, "donAcc_type": "standard", "distance": 2.682, "atom1_id": "///A/2154/N1", "atom2_id": "///A/2193/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4165, "atom1_serNum": 42562, "atom2_serNum": 43391, "donAcc_type": "standard", "distance": 2.575, "atom1_id": "///A/2154/N2", "atom2_id": "///A/2193/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4166, "atom1_serNum": 42562, "atom2_serNum": 43404, "donAcc_type": "standard", "distance": 2.853, "atom1_id": "///A/2154/N2", "atom2_id": "///A/2194/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4167, "atom1_serNum": 42562, "atom2_serNum": 43561, "donAcc_type": "standard", "distance": 2.743, "atom1_id": "///A/2154/N2", "atom2_id": "///A/2201/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4168, "atom1_serNum": 42562, "atom2_serNum": 43563, "donAcc_type": "standard", "distance": 2.793, "atom1_id": "///A/2154/N2", "atom2_id": "///A/2201/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4169, "atom1_serNum": 42563, "atom2_serNum": 43373, "donAcc_type": "acceptable", "distance": 3.253, "atom1_id": "///A/2154/N3", "atom2_id": "///A/2192/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4170, "atom1_serNum": 42567, "atom2_serNum": 43582, "donAcc_type": "questionable", "distance": 2.755, "atom1_id": "///A/2155/OP2", "atom2_id": "///A/2202/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4171, "atom1_serNum": 42579, "atom2_serNum": 80191, "donAcc_type": "standard", "distance": 3.840, "atom1_id": "///A/2155/N7", "atom2_id": "///Y/39/N", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 4172, "atom1_serNum": 42588, "atom2_serNum": 43597, "donAcc_type": "standard", "distance": 2.205, "atom1_id": "///A/2156/OP1", "atom2_id": "///A/2202/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4173, "atom1_serNum": 42593, "atom2_serNum": 43597, "donAcc_type": "standard", "distance": 2.911, "atom1_id": "///A/2156/O4'", "atom2_id": "///A/2202/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4174, "atom1_serNum": 42604, "atom2_serNum": 43338, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///A/2156/O6", "atom2_id": "///A/2190/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4175, "atom1_serNum": 42604, "atom2_serNum": 43361, "donAcc_type": "questionable", "distance": 2.660, "atom1_id": "///A/2156/O6", "atom2_id": "///A/2191/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4176, "atom1_serNum": 42605, "atom2_serNum": 43336, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///A/2156/N1", "atom2_id": "///A/2190/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4177, "atom1_serNum": 42607, "atom2_serNum": 43335, "donAcc_type": "standard", "distance": 2.756, "atom1_id": "///A/2156/N2", "atom2_id": "///A/2190/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4178, "atom1_serNum": 42607, "atom2_serNum": 43364, "donAcc_type": "standard", "distance": 3.024, "atom1_id": "///A/2156/N2", "atom2_id": "///A/2192/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4179, "atom1_serNum": 42624, "atom2_serNum": 43318, "donAcc_type": "standard", "distance": 2.759, "atom1_id": "///A/2157/O2", "atom2_id": "///A/2189/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4180, "atom1_serNum": 42625, "atom2_serNum": 43316, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///A/2157/N3", "atom2_id": "///A/2189/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4181, "atom1_serNum": 42627, "atom2_serNum": 43315, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///A/2157/N4", "atom2_id": "///A/2189/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4182, "atom1_serNum": 42640, "atom2_serNum": 42644, "donAcc_type": "acceptable", "distance": 3.046, "atom1_id": "///A/2158/O2'", "atom2_id": "///A/2158/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4183, "atom1_serNum": 42640, "atom2_serNum": 42656, "donAcc_type": "acceptable", "distance": 2.688, "atom1_id": "///A/2158/O2'", "atom2_id": "///A/2159/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4184, "atom1_serNum": 42644, "atom2_serNum": 43289, "donAcc_type": "questionable", "distance": 2.987, "atom1_id": "///A/2158/O2", "atom2_id": "///A/2188/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4185, "atom1_serNum": 42645, "atom2_serNum": 43263, "donAcc_type": "acceptable", "distance": 2.724, "atom1_id": "///A/2158/N3", "atom2_id": "///A/2187/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4186, "atom1_serNum": 42653, "atom2_serNum": 43293, "donAcc_type": "standard", "distance": 3.210, "atom1_id": "///A/2159/O5'", "atom2_id": "///A/2188/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4187, "atom1_serNum": 42658, "atom2_serNum": 43250, "donAcc_type": "standard", "distance": 2.865, "atom1_id": "///A/2159/O3'", "atom2_id": "///A/2186/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4188, "atom1_serNum": 42658, "atom2_serNum": 43271, "donAcc_type": "questionable", "distance": 2.856, "atom1_id": "///A/2159/O3'", "atom2_id": "///A/2187/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4189, "atom1_serNum": 42660, "atom2_serNum": 43250, "donAcc_type": "acceptable", "distance": 3.188, "atom1_id": "///A/2159/O2'", "atom2_id": "///A/2186/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4190, "atom1_serNum": 42664, "atom2_serNum": 43270, "donAcc_type": "standard", "distance": 2.229, "atom1_id": "///A/2159/O2", "atom2_id": "///A/2187/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4191, "atom1_serNum": 42671, "atom2_serNum": 43240, "donAcc_type": "acceptable", "distance": 2.816, "atom1_id": "///A/2160/OP1", "atom2_id": "///A/2186/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4192, "atom1_serNum": 42671, "atom2_serNum": 43251, "donAcc_type": "questionable", "distance": 2.728, "atom1_id": "///A/2160/OP1", "atom2_id": "///A/2186/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4193, "atom1_serNum": 42673, "atom2_serNum": 43224, "donAcc_type": "questionable", "distance": 2.661, "atom1_id": "///A/2160/O5'", "atom2_id": "///A/2185/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4194, "atom1_serNum": 42673, "atom2_serNum": 43250, "donAcc_type": "standard", "distance": 2.536, "atom1_id": "///A/2160/O5'", "atom2_id": "///A/2186/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4195, "atom1_serNum": 42676, "atom2_serNum": 43250, "donAcc_type": "standard", "distance": 2.344, "atom1_id": "///A/2160/O4'", "atom2_id": "///A/2186/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4196, "atom1_serNum": 42680, "atom2_serNum": 43166, "donAcc_type": "acceptable", "distance": 3.343, "atom1_id": "///A/2160/O2'", "atom2_id": "///A/2183/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4197, "atom1_serNum": 42684, "atom2_serNum": 43250, "donAcc_type": "standard", "distance": 3.077, "atom1_id": "///A/2160/O2", "atom2_id": "///A/2186/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4198, "atom1_serNum": 42692, "atom2_serNum": 43151, "donAcc_type": "acceptable", "distance": 2.059, "atom1_id": "///A/2161/OP2", "atom2_id": "///A/2182/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4199, "atom1_serNum": 42693, "atom2_serNum": 43149, "donAcc_type": "questionable", "distance": 2.710, "atom1_id": "///A/2161/O5'", "atom2_id": "///A/2182/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4200, "atom1_serNum": 42693, "atom2_serNum": 43151, "donAcc_type": "acceptable", "distance": 2.958, "atom1_id": "///A/2161/O5'", "atom2_id": "///A/2182/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4201, "atom1_serNum": 42693, "atom2_serNum": 43167, "donAcc_type": "questionable", "distance": 2.910, "atom1_id": "///A/2161/O5'", "atom2_id": "///A/2183/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4202, "atom1_serNum": 42698, "atom2_serNum": 43184, "donAcc_type": "standard", "distance": 2.825, "atom1_id": "///A/2161/O3'", "atom2_id": "///A/2183/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4203, "atom1_serNum": 42700, "atom2_serNum": 42714, "donAcc_type": "acceptable", "distance": 2.545, "atom1_id": "///A/2161/O2'", "atom2_id": "///A/2162/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4204, "atom1_serNum": 42700, "atom2_serNum": 43161, "donAcc_type": "acceptable", "distance": 3.231, "atom1_id": "///A/2161/O2'", "atom2_id": "///A/2182/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4205, "atom1_serNum": 42704, "atom2_serNum": 42862, "donAcc_type": "standard", "distance": 2.225, "atom1_id": "///A/2161/N7", "atom2_id": "///A/2168/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4206, "atom1_serNum": 42710, "atom2_serNum": 43165, "donAcc_type": "standard", "distance": 2.772, "atom1_id": "///A/2161/N2", "atom2_id": "///A/2183/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4207, "atom1_serNum": 42710, "atom2_serNum": 43178, "donAcc_type": "standard", "distance": 2.846, "atom1_id": "///A/2161/N2", "atom2_id": "///A/2183/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4208, "atom1_serNum": 42715, "atom2_serNum": 42812, "donAcc_type": "acceptable", "distance": 3.306, "atom1_id": "///A/2162/OP2", "atom2_id": "///A/2166/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4209, "atom1_serNum": 42716, "atom2_serNum": 43204, "donAcc_type": "questionable", "distance": 2.640, "atom1_id": "///A/2162/O5'", "atom2_id": "///A/2184/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4210, "atom1_serNum": 42723, "atom2_serNum": 42738, "donAcc_type": "acceptable", "distance": 2.614, "atom1_id": "///A/2162/O2'", "atom2_id": "///A/2163/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4211, "atom1_serNum": 42723, "atom2_serNum": 42744, "donAcc_type": "acceptable", "distance": 3.045, "atom1_id": "///A/2162/O2'", "atom2_id": "///A/2163/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4212, "atom1_serNum": 42723, "atom2_serNum": 42760, "donAcc_type": "acceptable", "distance": 2.532, "atom1_id": "///A/2162/O2'", "atom2_id": "///A/2164/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4213, "atom1_serNum": 42727, "atom2_serNum": 42797, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///A/2162/N7", "atom2_id": "///A/2165/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4214, "atom1_serNum": 42730, "atom2_serNum": 43189, "donAcc_type": "questionable", "distance": 2.670, "atom1_id": "///A/2162/O6", "atom2_id": "///A/2184/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4215, "atom1_serNum": 42731, "atom2_serNum": 43172, "donAcc_type": "standard", "distance": 3.022, "atom1_id": "///A/2162/N1", "atom2_id": "///A/2183/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4216, "atom1_serNum": 42731, "atom2_serNum": 43190, "donAcc_type": "standard", "distance": 3.125, "atom1_id": "///A/2162/N1", "atom2_id": "///A/2184/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4217, "atom1_serNum": 42733, "atom2_serNum": 43167, "donAcc_type": "standard", "distance": 2.367, "atom1_id": "///A/2162/N2", "atom2_id": "///A/2183/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4218, "atom1_serNum": 42733, "atom2_serNum": 43185, "donAcc_type": "standard", "distance": 2.559, "atom1_id": "///A/2162/N2", "atom2_id": "///A/2183/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4219, "atom1_serNum": 42746, "atom2_serNum": 43308, "donAcc_type": "acceptable", "distance": 3.074, "atom1_id": "///A/2163/O2'", "atom2_id": "///A/2189/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4220, "atom1_serNum": 42753, "atom2_serNum": 43236, "donAcc_type": "standard", "distance": 2.999, "atom1_id": "///A/2163/N6", "atom2_id": "///A/2186/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4221, "atom1_serNum": 42753, "atom2_serNum": 43285, "donAcc_type": "acceptable", "distance": 3.200, "atom1_id": "///A/2163/N6", "atom2_id": "///A/2188/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4222, "atom1_serNum": 42754, "atom2_serNum": 43285, "donAcc_type": "acceptable", "distance": 2.296, "atom1_id": "///A/2163/N1", "atom2_id": "///A/2188/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4223, "atom1_serNum": 42756, "atom2_serNum": 43308, "donAcc_type": "acceptable", "distance": 2.964, "atom1_id": "///A/2163/N3", "atom2_id": "///A/2189/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4224, "atom1_serNum": 42759, "atom2_serNum": 42819, "donAcc_type": "standard", "distance": 2.338, "atom1_id": "///A/2164/OP1", "atom2_id": "///A/2166/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4225, "atom1_serNum": 42760, "atom2_serNum": 42794, "donAcc_type": "questionable", "distance": 2.795, "atom1_id": "///A/2164/OP2", "atom2_id": "///A/2165/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4226, "atom1_serNum": 42760, "atom2_serNum": 43227, "donAcc_type": "standard", "distance": 3.053, "atom1_id": "///A/2164/OP2", "atom2_id": "///A/2185/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4227, "atom1_serNum": 42772, "atom2_serNum": 43227, "donAcc_type": "standard", "distance": 2.807, "atom1_id": "///A/2164/N7", "atom2_id": "///A/2185/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4228, "atom1_serNum": 42775, "atom2_serNum": 43217, "donAcc_type": "acceptable", "distance": 2.921, "atom1_id": "///A/2164/N6", "atom2_id": "///A/2185/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4229, "atom1_serNum": 42775, "atom2_serNum": 43228, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/2164/N6", "atom2_id": "///A/2185/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4230, "atom1_serNum": 42782, "atom2_serNum": 42819, "donAcc_type": "standard", "distance": 3.047, "atom1_id": "///A/2165/OP2", "atom2_id": "///A/2166/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4231, "atom1_serNum": 42797, "atom2_serNum": 43202, "donAcc_type": "questionable", "distance": 3.051, "atom1_id": "///A/2165/N6", "atom2_id": "///A/2184/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4232, "atom1_serNum": 42797, "atom2_serNum": 43228, "donAcc_type": "standard", "distance": 2.616, "atom1_id": "///A/2165/N6", "atom2_id": "///A/2185/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4233, "atom1_serNum": 42798, "atom2_serNum": 43201, "donAcc_type": "questionable", "distance": 3.288, "atom1_id": "///A/2165/N1", "atom2_id": "///A/2184/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4234, "atom1_serNum": 42816, "atom2_serNum": 43204, "donAcc_type": "questionable", "distance": 2.658, "atom1_id": "///A/2166/O2", "atom2_id": "///A/2184/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4235, "atom1_serNum": 42832, "atom2_serNum": 42848, "donAcc_type": "acceptable", "distance": 2.713, "atom1_id": "///A/2167/O2'", "atom2_id": "///A/2168/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4236, "atom1_serNum": 42836, "atom2_serNum": 43161, "donAcc_type": "standard", "distance": 3.770, "atom1_id": "///A/2167/O2", "atom2_id": "///A/2182/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4237, "atom1_serNum": 42859, "atom2_serNum": 43138, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///A/2168/O6", "atom2_id": "///A/2181/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4238, "atom1_serNum": 42860, "atom2_serNum": 43136, "donAcc_type": "standard", "distance": 2.830, "atom1_id": "///A/2168/N1", "atom2_id": "///A/2181/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4239, "atom1_serNum": 42862, "atom2_serNum": 43135, "donAcc_type": "standard", "distance": 2.649, "atom1_id": "///A/2168/N2", "atom2_id": "///A/2181/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4240, "atom1_serNum": 42883, "atom2_serNum": 43098, "donAcc_type": "standard", "distance": 2.481, "atom1_id": "///A/2169/N1", "atom2_id": "///A/2179/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4241, "atom1_serNum": 42885, "atom2_serNum": 43096, "donAcc_type": "questionable", "distance": 3.338, "atom1_id": "///A/2169/N2", "atom2_id": "///A/2179/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4242, "atom1_serNum": 42885, "atom2_serNum": 43115, "donAcc_type": "standard", "distance": 3.371, "atom1_id": "///A/2169/N2", "atom2_id": "///A/2180/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4243, "atom1_serNum": 42905, "atom2_serNum": 43076, "donAcc_type": "standard", "distance": 3.039, "atom1_id": "///A/2170/N6", "atom2_id": "///A/2178/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4244, "atom1_serNum": 42905, "atom2_serNum": 43098, "donAcc_type": "standard", "distance": 2.589, "atom1_id": "///A/2170/N6", "atom2_id": "///A/2179/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4245, "atom1_serNum": 42906, "atom2_serNum": 43096, "donAcc_type": "standard", "distance": 3.226, "atom1_id": "///A/2170/N1", "atom2_id": "///A/2179/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4246, "atom1_serNum": 42927, "atom2_serNum": 43056, "donAcc_type": "standard", "distance": 3.521, "atom1_id": "///A/2171/O6", "atom2_id": "///A/2177/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4247, "atom1_serNum": 42927, "atom2_serNum": 43058, "donAcc_type": "standard", "distance": 3.479, "atom1_id": "///A/2171/O6", "atom2_id": "///A/2177/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4248, "atom1_serNum": 42927, "atom2_serNum": 43078, "donAcc_type": "standard", "distance": 2.834, "atom1_id": "///A/2171/O6", "atom2_id": "///A/2178/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4249, "atom1_serNum": 42928, "atom2_serNum": 43058, "donAcc_type": "questionable", "distance": 2.954, "atom1_id": "///A/2171/N1", "atom2_id": "///A/2177/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4250, "atom1_serNum": 42928, "atom2_serNum": 43076, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///A/2171/N1", "atom2_id": "///A/2178/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4251, "atom1_serNum": 42930, "atom2_serNum": 43075, "donAcc_type": "standard", "distance": 2.675, "atom1_id": "///A/2171/N2", "atom2_id": "///A/2178/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4252, "atom1_serNum": 42947, "atom2_serNum": 43058, "donAcc_type": "standard", "distance": 2.669, "atom1_id": "///A/2172/O2", "atom2_id": "///A/2177/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4253, "atom1_serNum": 42948, "atom2_serNum": 43056, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///A/2172/N3", "atom2_id": "///A/2177/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4254, "atom1_serNum": 42950, "atom2_serNum": 43055, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///A/2172/N4", "atom2_id": "///A/2177/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4255, "atom1_serNum": 42974, "atom2_serNum": 43030, "donAcc_type": "questionable", "distance": 2.895, "atom1_id": "///A/2173/N3", "atom2_id": "///A/2176/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4256, "atom1_serNum": 43033, "atom2_serNum": 43059, "donAcc_type": "standard", "distance": 2.670, "atom1_id": "///A/2176/N6", "atom2_id": "///A/2177/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4257, "atom1_serNum": 43048, "atom2_serNum": 43064, "donAcc_type": "acceptable", "distance": 2.455, "atom1_id": "///A/2177/O2'", "atom2_id": "///A/2178/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4258, "atom1_serNum": 43048, "atom2_serNum": 43067, "donAcc_type": "acceptable", "distance": 2.333, "atom1_id": "///A/2177/O2'", "atom2_id": "///A/2178/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4259, "atom1_serNum": 43091, "atom2_serNum": 43102, "donAcc_type": "acceptable", "distance": 2.724, "atom1_id": "///A/2179/O2'", "atom2_id": "///A/2180/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4260, "atom1_serNum": 43098, "atom2_serNum": 43118, "donAcc_type": "questionable", "distance": 2.888, "atom1_id": "///A/2179/O4", "atom2_id": "///A/2180/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4261, "atom1_serNum": 43111, "atom2_serNum": 43155, "donAcc_type": "acceptable", "distance": 2.479, "atom1_id": "///A/2180/O2'", "atom2_id": "///A/2182/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4262, "atom1_serNum": 43115, "atom2_serNum": 43138, "donAcc_type": "standard", "distance": 2.691, "atom1_id": "///A/2180/O2", "atom2_id": "///A/2181/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4263, "atom1_serNum": 43116, "atom2_serNum": 43158, "donAcc_type": "standard", "distance": 2.796, "atom1_id": "///A/2180/N3", "atom2_id": "///A/2182/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4264, "atom1_serNum": 43174, "atom2_serNum": 43188, "donAcc_type": "acceptable", "distance": 2.385, "atom1_id": "///A/2183/O2'", "atom2_id": "///A/2184/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4265, "atom1_serNum": 43197, "atom2_serNum": 43201, "donAcc_type": "acceptable", "distance": 2.588, "atom1_id": "///A/2184/O2'", "atom2_id": "///A/2184/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4266, "atom1_serNum": 43197, "atom2_serNum": 43210, "donAcc_type": "acceptable", "distance": 2.435, "atom1_id": "///A/2184/O2'", "atom2_id": "///A/2185/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4267, "atom1_serNum": 43197, "atom2_serNum": 43213, "donAcc_type": "acceptable", "distance": 2.236, "atom1_id": "///A/2184/O2'", "atom2_id": "///A/2185/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4268, "atom1_serNum": 43285, "atom2_serNum": 43299, "donAcc_type": "acceptable", "distance": 2.438, "atom1_id": "///A/2188/O2'", "atom2_id": "///A/2189/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4269, "atom1_serNum": 43351, "atom2_serNum": 43361, "donAcc_type": "acceptable", "distance": 3.194, "atom1_id": "///A/2191/O2'", "atom2_id": "///A/2191/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4270, "atom1_serNum": 43351, "atom2_serNum": 43380, "donAcc_type": "acceptable", "distance": 3.947, "atom1_id": "///A/2191/O2'", "atom2_id": "///A/2192/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4271, "atom1_serNum": 43369, "atom2_serNum": 43597, "donAcc_type": "standard", "distance": 3.293, "atom1_id": "///A/2192/O4'", "atom2_id": "///A/2202/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4272, "atom1_serNum": 43373, "atom2_serNum": 43594, "donAcc_type": "acceptable", "distance": 3.097, "atom1_id": "///A/2192/O2'", "atom2_id": "///A/2202/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4273, "atom1_serNum": 43384, "atom2_serNum": 43562, "donAcc_type": "questionable", "distance": 2.665, "atom1_id": "///A/2193/OP1", "atom2_id": "///A/2201/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4274, "atom1_serNum": 43404, "atom2_serNum": 43443, "donAcc_type": "questionable", "distance": 3.124, "atom1_id": "///A/2194/OP1", "atom2_id": "///A/2195/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4275, "atom1_serNum": 43404, "atom2_serNum": 43561, "donAcc_type": "questionable", "distance": 2.694, "atom1_id": "///A/2194/OP1", "atom2_id": "///A/2201/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4276, "atom1_serNum": 43413, "atom2_serNum": 43432, "donAcc_type": "acceptable", "distance": 2.930, "atom1_id": "///A/2194/O2'", "atom2_id": "///A/2195/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4277, "atom1_serNum": 43436, "atom2_serNum": 43451, "donAcc_type": "acceptable", "distance": 2.439, "atom1_id": "///A/2195/O2'", "atom2_id": "///A/2196/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4278, "atom1_serNum": 43436, "atom2_serNum": 43486, "donAcc_type": "acceptable", "distance": 2.941, "atom1_id": "///A/2195/O2'", "atom2_id": "///A/2197/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4279, "atom1_serNum": 43436, "atom2_serNum": 43555, "donAcc_type": "acceptable", "distance": 2.718, "atom1_id": "///A/2195/O2'", "atom2_id": "///A/2200/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4280, "atom1_serNum": 43443, "atom2_serNum": 43561, "donAcc_type": "questionable", "distance": 3.083, "atom1_id": "///A/2195/O6", "atom2_id": "///A/2201/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4281, "atom1_serNum": 43479, "atom2_serNum": 43512, "donAcc_type": "acceptable", "distance": 2.744, "atom1_id": "///A/2197/O2'", "atom2_id": "///A/2198/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4282, "atom1_serNum": 43479, "atom2_serNum": 43513, "donAcc_type": "acceptable", "distance": 3.127, "atom1_id": "///A/2197/O2'", "atom2_id": "///A/2198/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4283, "atom1_serNum": 43487, "atom2_serNum": 43556, "donAcc_type": "standard", "distance": 2.426, "atom1_id": "///A/2197/N1", "atom2_id": "///A/2200/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4284, "atom1_serNum": 43489, "atom2_serNum": 43518, "donAcc_type": "standard", "distance": 2.736, "atom1_id": "///A/2197/N2", "atom2_id": "///A/2199/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4285, "atom1_serNum": 43489, "atom2_serNum": 43521, "donAcc_type": "standard", "distance": 3.063, "atom1_id": "///A/2197/N2", "atom2_id": "///A/2199/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4286, "atom1_serNum": 43502, "atom2_serNum": 43535, "donAcc_type": "acceptable", "distance": 3.049, "atom1_id": "///A/2198/O2'", "atom2_id": "///A/2199/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4287, "atom1_serNum": 43512, "atom2_serNum": 43533, "donAcc_type": "questionable", "distance": 2.829, "atom1_id": "///A/2198/N2", "atom2_id": "///A/2199/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4288, "atom1_serNum": 43525, "atom2_serNum": 43544, "donAcc_type": "acceptable", "distance": 2.544, "atom1_id": "///A/2199/O2'", "atom2_id": "///A/2200/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4289, "atom1_serNum": 43548, "atom2_serNum": 43562, "donAcc_type": "acceptable", "distance": 3.004, "atom1_id": "///A/2200/O2'", "atom2_id": "///A/2201/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4290, "atom1_serNum": 43570, "atom2_serNum": 43586, "donAcc_type": "acceptable", "distance": 2.754, "atom1_id": "///A/2201/O2'", "atom2_id": "///A/2202/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4291, "atom1_serNum": 43574, "atom2_serNum": 43619, "donAcc_type": "standard", "distance": 2.999, "atom1_id": "///A/2201/O2", "atom2_id": "///A/2203/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4292, "atom1_serNum": 43590, "atom2_serNum": 43603, "donAcc_type": "acceptable", "distance": 2.947, "atom1_id": "///A/2202/O2'", "atom2_id": "///A/2203/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4293, "atom1_serNum": 43632, "atom2_serNum": 43643, "donAcc_type": "acceptable", "distance": 2.997, "atom1_id": "///A/2204/O2'", "atom2_id": "///A/2205/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4294, "atom1_serNum": 43632, "atom2_serNum": 81403, "donAcc_type": "acceptable", "distance": 3.495, "atom1_id": "///A/2204/O2'", "atom2_id": "///Y/214/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 4295, "atom1_serNum": 43652, "atom2_serNum": 43667, "donAcc_type": "acceptable", "distance": 2.618, "atom1_id": "///A/2205/O2'", "atom2_id": "///A/2206/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4296, "atom1_serNum": 43652, "atom2_serNum": 43670, "donAcc_type": "acceptable", "distance": 2.923, "atom1_id": "///A/2205/O2'", "atom2_id": "///A/2206/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4297, "atom1_serNum": 43672, "atom2_serNum": 81387, "donAcc_type": "standard", "distance": 2.141, "atom1_id": "///A/2206/O3'", "atom2_id": "///Y/211/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4298, "atom1_serNum": 43674, "atom2_serNum": 43685, "donAcc_type": "acceptable", "distance": 2.896, "atom1_id": "///A/2206/O2'", "atom2_id": "///A/2207/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4299, "atom1_serNum": 43686, "atom2_serNum": 81387, "donAcc_type": "standard", "distance": 2.200, "atom1_id": "///A/2207/OP2", "atom2_id": "///Y/211/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4300, "atom1_serNum": 43687, "atom2_serNum": 80260, "donAcc_type": "standard", "distance": 3.388, "atom1_id": "///A/2207/O5'", "atom2_id": "///Y/47/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4301, "atom1_serNum": 43692, "atom2_serNum": 80260, "donAcc_type": "standard", "distance": 2.830, "atom1_id": "///A/2207/O3'", "atom2_id": "///Y/47/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4302, "atom1_serNum": 43694, "atom2_serNum": 43707, "donAcc_type": "acceptable", "distance": 2.954, "atom1_id": "///A/2207/O2'", "atom2_id": "///A/2208/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4303, "atom1_serNum": 43883, "atom2_serNum": 43898, "donAcc_type": "acceptable", "distance": 2.686, "atom1_id": "///A/2216/O2'", "atom2_id": "///A/2217/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4304, "atom1_serNum": 43905, "atom2_serNum": 43918, "donAcc_type": "acceptable", "distance": 2.742, "atom1_id": "///A/2217/O2'", "atom2_id": "///A/2218/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4305, "atom1_serNum": 43905, "atom2_serNum": 43921, "donAcc_type": "acceptable", "distance": 2.589, "atom1_id": "///A/2217/O2'", "atom2_id": "///A/2218/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4306, "atom1_serNum": 43968, "atom2_serNum": 43983, "donAcc_type": "acceptable", "distance": 2.886, "atom1_id": "///A/2220/O2'", "atom2_id": "///A/2221/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4307, "atom1_serNum": 44077, "atom2_serNum": 44692, "donAcc_type": "standard", "distance": 3.752, "atom1_id": "///A/2225/N4", "atom2_id": "///A/2254/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4308, "atom1_serNum": 44094, "atom2_serNum": 44695, "donAcc_type": "standard", "distance": 3.226, "atom1_id": "///A/2226/O2", "atom2_id": "///A/2254/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4309, "atom1_serNum": 44095, "atom2_serNum": 44692, "donAcc_type": "standard", "distance": 3.412, "atom1_id": "///A/2226/N3", "atom2_id": "///A/2254/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4310, "atom1_serNum": 44097, "atom2_serNum": 44665, "donAcc_type": "acceptable", "distance": 2.991, "atom1_id": "///A/2226/O4", "atom2_id": "///A/2253/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4311, "atom1_serNum": 44110, "atom2_serNum": 44124, "donAcc_type": "acceptable", "distance": 3.071, "atom1_id": "///A/2227/O2'", "atom2_id": "///A/2228/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4312, "atom1_serNum": 44110, "atom2_serNum": 44125, "donAcc_type": "acceptable", "distance": 2.792, "atom1_id": "///A/2227/O2'", "atom2_id": "///A/2228/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4313, "atom1_serNum": 44110, "atom2_serNum": 44128, "donAcc_type": "acceptable", "distance": 3.050, "atom1_id": "///A/2227/O2'", "atom2_id": "///A/2228/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4314, "atom1_serNum": 44110, "atom2_serNum": 44675, "donAcc_type": "acceptable", "distance": 3.644, "atom1_id": "///A/2227/O2'", "atom2_id": "///A/2253/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4315, "atom1_serNum": 44136, "atom2_serNum": 44675, "donAcc_type": "standard", "distance": 2.417, "atom1_id": "///A/2228/N7", "atom2_id": "///A/2253/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4316, "atom1_serNum": 44139, "atom2_serNum": 44665, "donAcc_type": "acceptable", "distance": 3.124, "atom1_id": "///A/2228/N6", "atom2_id": "///A/2253/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4317, "atom1_serNum": 44139, "atom2_serNum": 44679, "donAcc_type": "standard", "distance": 3.185, "atom1_id": "///A/2228/N6", "atom2_id": "///A/2254/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4318, "atom1_serNum": 44140, "atom2_serNum": 44717, "donAcc_type": "standard", "distance": 2.842, "atom1_id": "///A/2228/N1", "atom2_id": "///A/2255/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4319, "atom1_serNum": 44154, "atom2_serNum": 44738, "donAcc_type": "acceptable", "distance": 2.760, "atom1_id": "///A/2229/O2'", "atom2_id": "///A/2256/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4320, "atom1_serNum": 44158, "atom2_serNum": 44717, "donAcc_type": "standard", "distance": 3.373, "atom1_id": "///A/2229/O2", "atom2_id": "///A/2255/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4321, "atom1_serNum": 44161, "atom2_serNum": 44651, "donAcc_type": "standard", "distance": 3.725, "atom1_id": "///A/2229/N4", "atom2_id": "///A/2252/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4322, "atom1_serNum": 44178, "atom2_serNum": 44630, "donAcc_type": "standard", "distance": 2.736, "atom1_id": "///A/2230/O2", "atom2_id": "///A/2251/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4323, "atom1_serNum": 44179, "atom2_serNum": 44628, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///A/2230/N3", "atom2_id": "///A/2251/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4324, "atom1_serNum": 44181, "atom2_serNum": 44627, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///A/2230/N4", "atom2_id": "///A/2251/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4325, "atom1_serNum": 44194, "atom2_serNum": 44228, "donAcc_type": "acceptable", "distance": 2.915, "atom1_id": "///A/2231/O2'", "atom2_id": "///A/2233/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4326, "atom1_serNum": 44198, "atom2_serNum": 44607, "donAcc_type": "standard", "distance": 2.709, "atom1_id": "///A/2231/O2", "atom2_id": "///A/2250/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4327, "atom1_serNum": 44199, "atom2_serNum": 44605, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///A/2231/N3", "atom2_id": "///A/2250/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4328, "atom1_serNum": 44201, "atom2_serNum": 44604, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///A/2231/N4", "atom2_id": "///A/2250/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4329, "atom1_serNum": 44214, "atom2_serNum": 44229, "donAcc_type": "acceptable", "distance": 2.990, "atom1_id": "///A/2232/O2'", "atom2_id": "///A/2233/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4330, "atom1_serNum": 44237, "atom2_serNum": 44253, "donAcc_type": "acceptable", "distance": 3.268, "atom1_id": "///A/2233/O2'", "atom2_id": "///A/2234/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4331, "atom1_serNum": 44237, "atom2_serNum": 61012, "donAcc_type": "acceptable", "distance": 2.898, "atom1_id": "///A/2233/O2'", "atom2_id": "///C/148/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 4332, "atom1_serNum": 44241, "atom2_serNum": 44584, "donAcc_type": "standard", "distance": 2.719, "atom1_id": "///A/2233/O2", "atom2_id": "///A/2249/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4333, "atom1_serNum": 44242, "atom2_serNum": 44582, "donAcc_type": "standard", "distance": 2.856, "atom1_id": "///A/2233/N3", "atom2_id": "///A/2249/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4334, "atom1_serNum": 44244, "atom2_serNum": 44581, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///A/2233/N4", "atom2_id": "///A/2249/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4335, "atom1_serNum": 44261, "atom2_serNum": 44561, "donAcc_type": "standard", "distance": 2.750, "atom1_id": "///A/2234/O2", "atom2_id": "///A/2248/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4336, "atom1_serNum": 44262, "atom2_serNum": 44559, "donAcc_type": "standard", "distance": 2.839, "atom1_id": "///A/2234/N3", "atom2_id": "///A/2248/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4337, "atom1_serNum": 44264, "atom2_serNum": 44558, "donAcc_type": "standard", "distance": 2.785, "atom1_id": "///A/2234/N4", "atom2_id": "///A/2248/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4338, "atom1_serNum": 44284, "atom2_serNum": 44538, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///A/2235/O6", "atom2_id": "///A/2247/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4339, "atom1_serNum": 44285, "atom2_serNum": 44536, "donAcc_type": "standard", "distance": 2.870, "atom1_id": "///A/2235/N1", "atom2_id": "///A/2247/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4340, "atom1_serNum": 44287, "atom2_serNum": 44535, "donAcc_type": "standard", "distance": 2.763, "atom1_id": "///A/2235/N2", "atom2_id": "///A/2247/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4341, "atom1_serNum": 44304, "atom2_serNum": 44518, "donAcc_type": "standard", "distance": 2.778, "atom1_id": "///A/2236/O2", "atom2_id": "///A/2246/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4342, "atom1_serNum": 44305, "atom2_serNum": 44516, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/2236/N3", "atom2_id": "///A/2246/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4343, "atom1_serNum": 44307, "atom2_serNum": 44515, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///A/2236/N4", "atom2_id": "///A/2246/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4344, "atom1_serNum": 44324, "atom2_serNum": 44495, "donAcc_type": "standard", "distance": 2.717, "atom1_id": "///A/2237/O2", "atom2_id": "///A/2245/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4345, "atom1_serNum": 44325, "atom2_serNum": 44493, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///A/2237/N3", "atom2_id": "///A/2245/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4346, "atom1_serNum": 44327, "atom2_serNum": 44492, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///A/2237/N4", "atom2_id": "///A/2245/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4347, "atom1_serNum": 44332, "atom2_serNum": 44360, "donAcc_type": "acceptable", "distance": 3.376, "atom1_id": "///A/2238/OP2", "atom2_id": "///A/2239/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4348, "atom1_serNum": 44344, "atom2_serNum": 44472, "donAcc_type": "standard", "distance": 2.844, "atom1_id": "///A/2238/O2", "atom2_id": "///A/2244/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4349, "atom1_serNum": 44345, "atom2_serNum": 44470, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///A/2238/N3", "atom2_id": "///A/2244/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4350, "atom1_serNum": 44347, "atom2_serNum": 44469, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///A/2238/N4", "atom2_id": "///A/2244/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4351, "atom1_serNum": 44367, "atom2_serNum": 44449, "donAcc_type": "standard", "distance": 3.388, "atom1_id": "///A/2239/O4", "atom2_id": "///A/2243/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4352, "atom1_serNum": 44367, "atom2_serNum": 44470, "donAcc_type": "standard", "distance": 2.488, "atom1_id": "///A/2239/O4", "atom2_id": "///A/2244/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4353, "atom1_serNum": 44367, "atom2_serNum": 44472, "donAcc_type": "standard", "distance": 3.191, "atom1_id": "///A/2239/O4", "atom2_id": "///A/2244/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4354, "atom1_serNum": 44380, "atom2_serNum": 44393, "donAcc_type": "acceptable", "distance": 2.574, "atom1_id": "///A/2240/O2'", "atom2_id": "///A/2241/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4355, "atom1_serNum": 44620, "atom2_serNum": 44636, "donAcc_type": "acceptable", "distance": 3.115, "atom1_id": "///A/2251/O2'", "atom2_id": "///A/2252/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4356, "atom1_serNum": 44665, "atom2_serNum": 44676, "donAcc_type": "acceptable", "distance": 2.876, "atom1_id": "///A/2253/O2'", "atom2_id": "///A/2253/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4357, "atom1_serNum": 44665, "atom2_serNum": 44681, "donAcc_type": "acceptable", "distance": 3.037, "atom1_id": "///A/2253/O2'", "atom2_id": "///A/2254/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4358, "atom1_serNum": 44688, "atom2_serNum": 44701, "donAcc_type": "acceptable", "distance": 3.155, "atom1_id": "///A/2254/O2'", "atom2_id": "///A/2255/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4359, "atom1_serNum": 44721, "atom2_serNum": 61783, "donAcc_type": "standard", "distance": 3.297, "atom1_id": "///A/2256/OP1", "atom2_id": "///C/263/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4360, "atom1_serNum": 44795, "atom2_serNum": 44811, "donAcc_type": "acceptable", "distance": 2.854, "atom1_id": "///A/2259/O2'", "atom2_id": "///A/2260/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4361, "atom1_serNum": 44818, "atom2_serNum": 44831, "donAcc_type": "acceptable", "distance": 2.959, "atom1_id": "///A/2260/O2'", "atom2_id": "///A/2261/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4362, "atom1_serNum": 44858, "atom2_serNum": 44868, "donAcc_type": "acceptable", "distance": 2.714, "atom1_id": "///A/2262/O2'", "atom2_id": "///A/2262/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4363, "atom1_serNum": 44872, "atom2_serNum": 78215, "donAcc_type": "acceptable", "distance": 3.934, "atom1_id": "///A/2263/OP2", "atom2_id": "///W/240/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 4364, "atom1_serNum": 44880, "atom2_serNum": 44894, "donAcc_type": "acceptable", "distance": 2.473, "atom1_id": "///A/2263/O2'", "atom2_id": "///A/2264/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4365, "atom1_serNum": 44903, "atom2_serNum": 44917, "donAcc_type": "acceptable", "distance": 2.292, "atom1_id": "///A/2264/O2'", "atom2_id": "///A/2265/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4366, "atom1_serNum": 44965, "atom2_serNum": 44996, "donAcc_type": "questionable", "distance": 2.867, "atom1_id": "///A/2267/O4'", "atom2_id": "///A/2268/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4367, "atom1_serNum": 45057, "atom2_serNum": 48693, "donAcc_type": "acceptable", "distance": 3.104, "atom1_id": "///A/2271/O2'", "atom2_id": "///A/2462/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4368, "atom1_serNum": 45080, "atom2_serNum": 48690, "donAcc_type": "acceptable", "distance": 3.023, "atom1_id": "///A/2272/O2'", "atom2_id": "///A/2462/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4369, "atom1_serNum": 45080, "atom2_serNum": 48693, "donAcc_type": "acceptable", "distance": 2.721, "atom1_id": "///A/2272/O2'", "atom2_id": "///A/2462/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4370, "atom1_serNum": 45085, "atom2_serNum": 45107, "donAcc_type": "standard", "distance": 2.451, "atom1_id": "///A/2272/N3", "atom2_id": "///A/2273/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4371, "atom1_serNum": 45096, "atom2_serNum": 48715, "donAcc_type": "standard", "distance": 2.505, "atom1_id": "///A/2273/O4'", "atom2_id": "///A/2463/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4372, "atom1_serNum": 45111, "atom2_serNum": 48563, "donAcc_type": "standard", "distance": 3.592, "atom1_id": "///A/2289/OP1", "atom2_id": "///A/2456/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4373, "atom1_serNum": 45112, "atom2_serNum": 45602, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///A/2289/OP2", "atom2_id": "///A/2311/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4374, "atom1_serNum": 45120, "atom2_serNum": 45132, "donAcc_type": "acceptable", "distance": 2.445, "atom1_id": "///A/2289/O2'", "atom2_id": "///A/2290/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4375, "atom1_serNum": 45124, "atom2_serNum": 45559, "donAcc_type": "standard", "distance": 2.752, "atom1_id": "///A/2289/O2", "atom2_id": "///A/2309/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4376, "atom1_serNum": 45125, "atom2_serNum": 45557, "donAcc_type": "standard", "distance": 2.870, "atom1_id": "///A/2289/N3", "atom2_id": "///A/2309/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4377, "atom1_serNum": 45127, "atom2_serNum": 45556, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///A/2289/N4", "atom2_id": "///A/2309/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4378, "atom1_serNum": 45140, "atom2_serNum": 45151, "donAcc_type": "acceptable", "distance": 2.740, "atom1_id": "///A/2290/O2'", "atom2_id": "///A/2291/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4379, "atom1_serNum": 45140, "atom2_serNum": 47701, "donAcc_type": "acceptable", "distance": 2.615, "atom1_id": "///A/2290/O2'", "atom2_id": "///A/2416/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4380, "atom1_serNum": 45144, "atom2_serNum": 45536, "donAcc_type": "standard", "distance": 2.775, "atom1_id": "///A/2290/O2", "atom2_id": "///A/2308/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4381, "atom1_serNum": 45145, "atom2_serNum": 45534, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///A/2290/N3", "atom2_id": "///A/2308/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4382, "atom1_serNum": 45147, "atom2_serNum": 45533, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///A/2290/N4", "atom2_id": "///A/2308/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4383, "atom1_serNum": 45156, "atom2_serNum": 47686, "donAcc_type": "standard", "distance": 3.287, "atom1_id": "///A/2291/O4'", "atom2_id": "///A/2415/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4384, "atom1_serNum": 45158, "atom2_serNum": 45511, "donAcc_type": "standard", "distance": 3.116, "atom1_id": "///A/2291/O3'", "atom2_id": "///A/2307/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4385, "atom1_serNum": 45160, "atom2_serNum": 45164, "donAcc_type": "acceptable", "distance": 2.653, "atom1_id": "///A/2291/O2'", "atom2_id": "///A/2291/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4386, "atom1_serNum": 45160, "atom2_serNum": 45173, "donAcc_type": "acceptable", "distance": 2.620, "atom1_id": "///A/2291/O2'", "atom2_id": "///A/2292/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4387, "atom1_serNum": 45160, "atom2_serNum": 45512, "donAcc_type": "acceptable", "distance": 3.177, "atom1_id": "///A/2291/O2'", "atom2_id": "///A/2307/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4388, "atom1_serNum": 45180, "atom2_serNum": 45193, "donAcc_type": "acceptable", "distance": 2.756, "atom1_id": "///A/2292/O2'", "atom2_id": "///A/2293/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4389, "atom1_serNum": 45180, "atom2_serNum": 45488, "donAcc_type": "acceptable", "distance": 2.338, "atom1_id": "///A/2292/O2'", "atom2_id": "///A/2306/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4390, "atom1_serNum": 45180, "atom2_serNum": 45489, "donAcc_type": "acceptable", "distance": 3.205, "atom1_id": "///A/2292/O2'", "atom2_id": "///A/2306/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4391, "atom1_serNum": 45185, "atom2_serNum": 45500, "donAcc_type": "questionable", "distance": 3.052, "atom1_id": "///A/2292/N3", "atom2_id": "///A/2307/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4392, "atom1_serNum": 45200, "atom2_serNum": 45213, "donAcc_type": "acceptable", "distance": 2.204, "atom1_id": "///A/2293/O2'", "atom2_id": "///A/2294/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4393, "atom1_serNum": 45220, "atom2_serNum": 45224, "donAcc_type": "acceptable", "distance": 2.548, "atom1_id": "///A/2294/O2'", "atom2_id": "///A/2294/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4394, "atom1_serNum": 45220, "atom2_serNum": 45232, "donAcc_type": "acceptable", "distance": 2.567, "atom1_id": "///A/2294/O2'", "atom2_id": "///A/2295/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4395, "atom1_serNum": 45220, "atom2_serNum": 45233, "donAcc_type": "acceptable", "distance": 2.589, "atom1_id": "///A/2294/O2'", "atom2_id": "///A/2295/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4396, "atom1_serNum": 45247, "atom2_serNum": 45374, "donAcc_type": "acceptable", "distance": 3.183, "atom1_id": "///A/2295/N6", "atom2_id": "///A/2301/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4397, "atom1_serNum": 45247, "atom2_serNum": 45378, "donAcc_type": "standard", "distance": 2.292, "atom1_id": "///A/2295/N6", "atom2_id": "///A/2301/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4398, "atom1_serNum": 45248, "atom2_serNum": 45374, "donAcc_type": "acceptable", "distance": 2.168, "atom1_id": "///A/2295/N1", "atom2_id": "///A/2301/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4399, "atom1_serNum": 45262, "atom2_serNum": 45275, "donAcc_type": "acceptable", "distance": 2.837, "atom1_id": "///A/2296/O2'", "atom2_id": "///A/2297/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4400, "atom1_serNum": 45262, "atom2_serNum": 45277, "donAcc_type": "acceptable", "distance": 3.079, "atom1_id": "///A/2296/O2'", "atom2_id": "///A/2297/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4401, "atom1_serNum": 45284, "atom2_serNum": 45298, "donAcc_type": "acceptable", "distance": 2.813, "atom1_id": "///A/2297/O2'", "atom2_id": "///A/2298/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4402, "atom1_serNum": 45306, "atom2_serNum": 45316, "donAcc_type": "acceptable", "distance": 2.959, "atom1_id": "///A/2298/O2'", "atom2_id": "///A/2298/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4403, "atom1_serNum": 45306, "atom2_serNum": 45321, "donAcc_type": "acceptable", "distance": 2.302, "atom1_id": "///A/2298/O2'", "atom2_id": "///A/2299/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4404, "atom1_serNum": 45328, "atom2_serNum": 45347, "donAcc_type": "acceptable", "distance": 2.686, "atom1_id": "///A/2299/O2'", "atom2_id": "///A/2300/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4405, "atom1_serNum": 45394, "atom2_serNum": 45412, "donAcc_type": "acceptable", "distance": 2.618, "atom1_id": "///A/2302/O2'", "atom2_id": "///A/2303/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4406, "atom1_serNum": 45438, "atom2_serNum": 45451, "donAcc_type": "acceptable", "distance": 2.304, "atom1_id": "///A/2304/O2'", "atom2_id": "///A/2305/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4407, "atom1_serNum": 45466, "atom2_serNum": 45488, "donAcc_type": "standard", "distance": 2.682, "atom1_id": "///A/2305/N1", "atom2_id": "///A/2306/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4408, "atom1_serNum": 45481, "atom2_serNum": 45495, "donAcc_type": "acceptable", "distance": 2.443, "atom1_id": "///A/2306/O2'", "atom2_id": "///A/2307/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4409, "atom1_serNum": 45526, "atom2_serNum": 46378, "donAcc_type": "acceptable", "distance": 2.780, "atom1_id": "///A/2308/O2'", "atom2_id": "///A/2355/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4410, "atom1_serNum": 45536, "atom2_serNum": 47705, "donAcc_type": "standard", "distance": 2.654, "atom1_id": "///A/2308/N2", "atom2_id": "///A/2416/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4411, "atom1_serNum": 45549, "atom2_serNum": 45563, "donAcc_type": "acceptable", "distance": 3.051, "atom1_id": "///A/2309/O2'", "atom2_id": "///A/2310/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4412, "atom1_serNum": 45549, "atom2_serNum": 45639, "donAcc_type": "acceptable", "distance": 3.427, "atom1_id": "///A/2309/O2'", "atom2_id": "///A/2313/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4413, "atom1_serNum": 45563, "atom2_serNum": 45615, "donAcc_type": "acceptable", "distance": 2.100, "atom1_id": "///A/2310/OP1", "atom2_id": "///A/2312/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4414, "atom1_serNum": 45564, "atom2_serNum": 45613, "donAcc_type": "questionable", "distance": 3.128, "atom1_id": "///A/2310/OP2", "atom2_id": "///A/2312/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4415, "atom1_serNum": 45572, "atom2_serNum": 45576, "donAcc_type": "acceptable", "distance": 3.113, "atom1_id": "///A/2310/O2'", "atom2_id": "///A/2310/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4416, "atom1_serNum": 45622, "atom2_serNum": 47766, "donAcc_type": "acceptable", "distance": 2.936, "atom1_id": "///A/2312/N4", "atom2_id": "///A/2419/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4417, "atom1_serNum": 45626, "atom2_serNum": 47753, "donAcc_type": "standard", "distance": 2.744, "atom1_id": "///A/2313/OP1", "atom2_id": "///A/2418/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4418, "atom1_serNum": 45627, "atom2_serNum": 47753, "donAcc_type": "standard", "distance": 3.104, "atom1_id": "///A/2313/OP2", "atom2_id": "///A/2418/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4419, "atom1_serNum": 45651, "atom2_serNum": 46367, "donAcc_type": "standard", "distance": 2.570, "atom1_id": "///A/2314/O4'", "atom2_id": "///A/2354/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4420, "atom1_serNum": 45655, "atom2_serNum": 45659, "donAcc_type": "acceptable", "distance": 2.822, "atom1_id": "///A/2314/O2'", "atom2_id": "///A/2314/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4421, "atom1_serNum": 45655, "atom2_serNum": 45675, "donAcc_type": "acceptable", "distance": 3.371, "atom1_id": "///A/2314/O2'", "atom2_id": "///A/2315/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4422, "atom1_serNum": 45655, "atom2_serNum": 47622, "donAcc_type": "acceptable", "distance": 2.968, "atom1_id": "///A/2314/O2'", "atom2_id": "///A/2412/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4423, "atom1_serNum": 45675, "atom2_serNum": 45748, "donAcc_type": "acceptable", "distance": 2.965, "atom1_id": "///A/2315/O2'", "atom2_id": "///A/2318/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4424, "atom1_serNum": 45675, "atom2_serNum": 47622, "donAcc_type": "acceptable", "distance": 2.309, "atom1_id": "///A/2315/O2'", "atom2_id": "///A/2412/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4425, "atom1_serNum": 45682, "atom2_serNum": 46335, "donAcc_type": "standard", "distance": 2.341, "atom1_id": "///A/2315/N6", "atom2_id": "///A/2353/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4426, "atom1_serNum": 45682, "atom2_serNum": 46337, "donAcc_type": "acceptable", "distance": 2.526, "atom1_id": "///A/2315/N6", "atom2_id": "///A/2353/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4427, "atom1_serNum": 45682, "atom2_serNum": 46349, "donAcc_type": "standard", "distance": 3.001, "atom1_id": "///A/2315/N6", "atom2_id": "///A/2354/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4428, "atom1_serNum": 45683, "atom2_serNum": 46337, "donAcc_type": "acceptable", "distance": 2.949, "atom1_id": "///A/2315/N1", "atom2_id": "///A/2353/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4429, "atom1_serNum": 45685, "atom2_serNum": 45726, "donAcc_type": "standard", "distance": 3.029, "atom1_id": "///A/2315/N3", "atom2_id": "///A/2317/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4430, "atom1_serNum": 45688, "atom2_serNum": 45748, "donAcc_type": "questionable", "distance": 2.854, "atom1_id": "///A/2316/OP1", "atom2_id": "///A/2318/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4431, "atom1_serNum": 45689, "atom2_serNum": 79863, "donAcc_type": "standard", "distance": 2.473, "atom1_id": "///A/2316/OP2", "atom2_id": "///Z/25/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4432, "atom1_serNum": 45695, "atom2_serNum": 45733, "donAcc_type": "questionable", "distance": 2.637, "atom1_id": "///A/2316/O3'", "atom2_id": "///A/2318/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4433, "atom1_serNum": 45712, "atom2_serNum": 45751, "donAcc_type": "standard", "distance": 2.315, "atom1_id": "///A/2317/O5'", "atom2_id": "///A/2318/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4434, "atom1_serNum": 45719, "atom2_serNum": 45755, "donAcc_type": "acceptable", "distance": 2.865, "atom1_id": "///A/2317/O2'", "atom2_id": "///A/2319/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4435, "atom1_serNum": 45726, "atom2_serNum": 45771, "donAcc_type": "standard", "distance": 2.593, "atom1_id": "///A/2317/N6", "atom2_id": "///A/2319/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4436, "atom1_serNum": 45741, "atom2_serNum": 46822, "donAcc_type": "acceptable", "distance": 2.282, "atom1_id": "///A/2318/O2'", "atom2_id": "///A/2375/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4437, "atom1_serNum": 45741, "atom2_serNum": 46823, "donAcc_type": "acceptable", "distance": 3.003, "atom1_id": "///A/2318/O2'", "atom2_id": "///A/2375/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4438, "atom1_serNum": 45755, "atom2_serNum": 46756, "donAcc_type": "questionable", "distance": 2.670, "atom1_id": "///A/2319/OP1", "atom2_id": "///A/2372/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4439, "atom1_serNum": 45764, "atom2_serNum": 47630, "donAcc_type": "acceptable", "distance": 3.125, "atom1_id": "///A/2319/O2'", "atom2_id": "///A/2413/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4440, "atom1_serNum": 45778, "atom2_serNum": 47596, "donAcc_type": "questionable", "distance": 3.318, "atom1_id": "///A/2320/OP1", "atom2_id": "///A/2411/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4441, "atom1_serNum": 45787, "atom2_serNum": 45799, "donAcc_type": "acceptable", "distance": 2.645, "atom1_id": "///A/2320/O2'", "atom2_id": "///A/2321/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4442, "atom1_serNum": 45787, "atom2_serNum": 45800, "donAcc_type": "acceptable", "distance": 2.963, "atom1_id": "///A/2320/O2'", "atom2_id": "///A/2321/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4443, "atom1_serNum": 45787, "atom2_serNum": 45803, "donAcc_type": "acceptable", "distance": 2.745, "atom1_id": "///A/2320/O2'", "atom2_id": "///A/2321/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4444, "atom1_serNum": 45792, "atom2_serNum": 46713, "donAcc_type": "standard", "distance": 3.164, "atom1_id": "///A/2320/N3", "atom2_id": "///A/2370/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4445, "atom1_serNum": 45794, "atom2_serNum": 46739, "donAcc_type": "standard", "distance": 3.064, "atom1_id": "///A/2320/O4", "atom2_id": "///A/2371/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4446, "atom1_serNum": 45798, "atom2_serNum": 47543, "donAcc_type": "questionable", "distance": 2.967, "atom1_id": "///A/2321/OP1", "atom2_id": "///A/2409/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4447, "atom1_serNum": 45800, "atom2_serNum": 47529, "donAcc_type": "acceptable", "distance": 2.838, "atom1_id": "///A/2321/O5'", "atom2_id": "///A/2408/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4448, "atom1_serNum": 45805, "atom2_serNum": 47427, "donAcc_type": "standard", "distance": 2.140, "atom1_id": "///A/2321/O3'", "atom2_id": "///A/2403/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4449, "atom1_serNum": 45807, "atom2_serNum": 45820, "donAcc_type": "acceptable", "distance": 2.479, "atom1_id": "///A/2321/O2'", "atom2_id": "///A/2322/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4450, "atom1_serNum": 45807, "atom2_serNum": 45823, "donAcc_type": "acceptable", "distance": 3.004, "atom1_id": "///A/2321/O2'", "atom2_id": "///A/2322/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4451, "atom1_serNum": 45812, "atom2_serNum": 46713, "donAcc_type": "standard", "distance": 2.417, "atom1_id": "///A/2321/N3", "atom2_id": "///A/2370/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4452, "atom1_serNum": 45814, "atom2_serNum": 46716, "donAcc_type": "questionable", "distance": 2.647, "atom1_id": "///A/2321/O4", "atom2_id": "///A/2370/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4453, "atom1_serNum": 45818, "atom2_serNum": 47427, "donAcc_type": "standard", "distance": 3.168, "atom1_id": "///A/2322/OP1", "atom2_id": "///A/2403/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4454, "atom1_serNum": 45818, "atom2_serNum": 47539, "donAcc_type": "standard", "distance": 2.814, "atom1_id": "///A/2322/OP1", "atom2_id": "///A/2408/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4455, "atom1_serNum": 45820, "atom2_serNum": 47427, "donAcc_type": "standard", "distance": 3.173, "atom1_id": "///A/2322/O5'", "atom2_id": "///A/2403/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4456, "atom1_serNum": 45827, "atom2_serNum": 45840, "donAcc_type": "acceptable", "distance": 2.513, "atom1_id": "///A/2322/O2'", "atom2_id": "///A/2323/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4457, "atom1_serNum": 45827, "atom2_serNum": 45843, "donAcc_type": "acceptable", "distance": 2.678, "atom1_id": "///A/2322/O2'", "atom2_id": "///A/2323/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4458, "atom1_serNum": 45832, "atom2_serNum": 46671, "donAcc_type": "questionable", "distance": 2.974, "atom1_id": "///A/2322/N3", "atom2_id": "///A/2368/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4459, "atom1_serNum": 45834, "atom2_serNum": 46695, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///A/2322/N4", "atom2_id": "///A/2369/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4460, "atom1_serNum": 45847, "atom2_serNum": 45863, "donAcc_type": "acceptable", "distance": 2.584, "atom1_id": "///A/2323/O2'", "atom2_id": "///A/2324/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4461, "atom1_serNum": 45851, "atom2_serNum": 46672, "donAcc_type": "standard", "distance": 3.294, "atom1_id": "///A/2323/O2", "atom2_id": "///A/2368/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4462, "atom1_serNum": 45858, "atom2_serNum": 76463, "donAcc_type": "standard", "distance": 3.072, "atom1_id": "///A/2324/OP1", "atom2_id": "///V/97/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4463, "atom1_serNum": 45858, "atom2_serNum": 76464, "donAcc_type": "standard", "distance": 3.313, "atom1_id": "///A/2324/OP1", "atom2_id": "///V/97/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4464, "atom1_serNum": 45871, "atom2_serNum": 46628, "donAcc_type": "standard", "distance": 2.963, "atom1_id": "///A/2324/O2", "atom2_id": "///A/2366/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4465, "atom1_serNum": 45871, "atom2_serNum": 46651, "donAcc_type": "standard", "distance": 2.415, "atom1_id": "///A/2324/O2", "atom2_id": "///A/2367/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4466, "atom1_serNum": 45872, "atom2_serNum": 46626, "donAcc_type": "standard", "distance": 2.851, "atom1_id": "///A/2324/N3", "atom2_id": "///A/2366/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4467, "atom1_serNum": 45872, "atom2_serNum": 46649, "donAcc_type": "standard", "distance": 2.809, "atom1_id": "///A/2324/N3", "atom2_id": "///A/2367/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4468, "atom1_serNum": 45874, "atom2_serNum": 46625, "donAcc_type": "standard", "distance": 2.595, "atom1_id": "///A/2324/N4", "atom2_id": "///A/2366/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4469, "atom1_serNum": 45874, "atom2_serNum": 46648, "donAcc_type": "standard", "distance": 3.059, "atom1_id": "///A/2324/N4", "atom2_id": "///A/2367/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4470, "atom1_serNum": 45887, "atom2_serNum": 45900, "donAcc_type": "acceptable", "distance": 2.228, "atom1_id": "///A/2325/O2'", "atom2_id": "///A/2326/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4471, "atom1_serNum": 45892, "atom2_serNum": 46622, "donAcc_type": "standard", "distance": 3.042, "atom1_id": "///A/2325/N3", "atom2_id": "///A/2366/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4472, "atom1_serNum": 45903, "atom2_serNum": 46540, "donAcc_type": "questionable", "distance": 3.186, "atom1_id": "///A/2326/O4'", "atom2_id": "///A/2362/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4473, "atom1_serNum": 45907, "atom2_serNum": 45918, "donAcc_type": "acceptable", "distance": 2.542, "atom1_id": "///A/2326/O2'", "atom2_id": "///A/2327/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4474, "atom1_serNum": 45911, "atom2_serNum": 45927, "donAcc_type": "acceptable", "distance": 3.024, "atom1_id": "///A/2326/O2", "atom2_id": "///A/2327/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4475, "atom1_serNum": 45911, "atom2_serNum": 46277, "donAcc_type": "standard", "distance": 3.166, "atom1_id": "///A/2326/O2", "atom2_id": "///A/2350/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4476, "atom1_serNum": 45912, "atom2_serNum": 46276, "donAcc_type": "questionable", "distance": 2.835, "atom1_id": "///A/2326/N3", "atom2_id": "///A/2350/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4477, "atom1_serNum": 45914, "atom2_serNum": 46223, "donAcc_type": "standard", "distance": 3.439, "atom1_id": "///A/2326/N4", "atom2_id": "///A/2348/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4478, "atom1_serNum": 45931, "atom2_serNum": 46188, "donAcc_type": "questionable", "distance": 2.753, "atom1_id": "///A/2327/N7", "atom2_id": "///A/2346/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4479, "atom1_serNum": 45934, "atom2_serNum": 46184, "donAcc_type": "acceptable", "distance": 2.768, "atom1_id": "///A/2327/N6", "atom2_id": "///A/2346/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4480, "atom1_serNum": 45934, "atom2_serNum": 46188, "donAcc_type": "standard", "distance": 2.831, "atom1_id": "///A/2327/N6", "atom2_id": "///A/2346/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4481, "atom1_serNum": 45937, "atom2_serNum": 46276, "donAcc_type": "questionable", "distance": 2.784, "atom1_id": "///A/2327/N3", "atom2_id": "///A/2350/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4482, "atom1_serNum": 45979, "atom2_serNum": 46151, "donAcc_type": "standard", "distance": 2.801, "atom1_id": "///A/2329/N6", "atom2_id": "///A/2344/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4483, "atom1_serNum": 45980, "atom2_serNum": 46149, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///A/2329/N1", "atom2_id": "///A/2344/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4484, "atom1_serNum": 45998, "atom2_serNum": 46130, "donAcc_type": "questionable", "distance": 3.120, "atom1_id": "///A/2330/N7", "atom2_id": "///A/2343/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4485, "atom1_serNum": 46016, "atom2_serNum": 46020, "donAcc_type": "acceptable", "distance": 3.020, "atom1_id": "///A/2331/O2'", "atom2_id": "///A/2331/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4486, "atom1_serNum": 46016, "atom2_serNum": 46029, "donAcc_type": "acceptable", "distance": 2.605, "atom1_id": "///A/2331/O2'", "atom2_id": "///A/2332/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4487, "atom1_serNum": 46021, "atom2_serNum": 46043, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///A/2331/N3", "atom2_id": "///A/2332/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4488, "atom1_serNum": 46023, "atom2_serNum": 46129, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///A/2331/O4", "atom2_id": "///A/2343/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4489, "atom1_serNum": 46036, "atom2_serNum": 46050, "donAcc_type": "acceptable", "distance": 2.789, "atom1_id": "///A/2332/O2'", "atom2_id": "///A/2333/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4490, "atom1_serNum": 46046, "atom2_serNum": 46122, "donAcc_type": "acceptable", "distance": 3.598, "atom1_id": "///A/2332/N2", "atom2_id": "///A/2343/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4491, "atom1_serNum": 46055, "atom2_serNum": 46109, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///A/2333/O4'", "atom2_id": "///A/2342/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4492, "atom1_serNum": 46063, "atom2_serNum": 46102, "donAcc_type": "acceptable", "distance": 3.287, "atom1_id": "///A/2333/N7", "atom2_id": "///A/2342/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4493, "atom1_serNum": 46066, "atom2_serNum": 46102, "donAcc_type": "acceptable", "distance": 2.235, "atom1_id": "///A/2333/O6", "atom2_id": "///A/2342/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4494, "atom1_serNum": 46144, "atom2_serNum": 46157, "donAcc_type": "acceptable", "distance": 2.986, "atom1_id": "///A/2344/O2'", "atom2_id": "///A/2345/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4495, "atom1_serNum": 46184, "atom2_serNum": 46197, "donAcc_type": "acceptable", "distance": 2.512, "atom1_id": "///A/2346/O2'", "atom2_id": "///A/2347/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4496, "atom1_serNum": 46211, "atom2_serNum": 46260, "donAcc_type": "questionable", "distance": 3.177, "atom1_id": "///A/2347/O6", "atom2_id": "///A/2350/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4497, "atom1_serNum": 46212, "atom2_serNum": 46240, "donAcc_type": "standard", "distance": 3.037, "atom1_id": "///A/2347/N1", "atom2_id": "///A/2349/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4498, "atom1_serNum": 46214, "atom2_serNum": 46240, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/2347/N2", "atom2_id": "///A/2349/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4499, "atom1_serNum": 46214, "atom2_serNum": 46276, "donAcc_type": "standard", "distance": 3.071, "atom1_id": "///A/2347/N2", "atom2_id": "///A/2350/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4500, "atom1_serNum": 46227, "atom2_serNum": 46239, "donAcc_type": "acceptable", "distance": 2.810, "atom1_id": "///A/2348/O2'", "atom2_id": "///A/2349/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4501, "atom1_serNum": 46231, "atom2_serNum": 46510, "donAcc_type": "questionable", "distance": 2.597, "atom1_id": "///A/2348/O2", "atom2_id": "///A/2361/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4502, "atom1_serNum": 46231, "atom2_serNum": 46512, "donAcc_type": "acceptable", "distance": 3.073, "atom1_id": "///A/2348/O2", "atom2_id": "///A/2361/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4503, "atom1_serNum": 46231, "atom2_serNum": 46524, "donAcc_type": "questionable", "distance": 3.053, "atom1_id": "///A/2348/O2", "atom2_id": "///A/2362/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4504, "atom1_serNum": 46247, "atom2_serNum": 46603, "donAcc_type": "acceptable", "distance": 2.229, "atom1_id": "///A/2349/O2'", "atom2_id": "///A/2365/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4505, "atom1_serNum": 46261, "atom2_serNum": 46299, "donAcc_type": "standard", "distance": 2.595, "atom1_id": "///A/2350/OP2", "atom2_id": "///A/2351/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4506, "atom1_serNum": 46292, "atom2_serNum": 46310, "donAcc_type": "acceptable", "distance": 2.570, "atom1_id": "///A/2351/O2'", "atom2_id": "///A/2352/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4507, "atom1_serNum": 46292, "atom2_serNum": 46341, "donAcc_type": "acceptable", "distance": 3.650, "atom1_id": "///A/2351/O2'", "atom2_id": "///A/2353/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4508, "atom1_serNum": 46302, "atom2_serNum": 46604, "donAcc_type": "questionable", "distance": 2.875, "atom1_id": "///A/2351/N3", "atom2_id": "///A/2365/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4509, "atom1_serNum": 46314, "atom2_serNum": 46329, "donAcc_type": "acceptable", "distance": 2.527, "atom1_id": "///A/2352/O2'", "atom2_id": "///A/2353/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4510, "atom1_serNum": 46314, "atom2_serNum": 46330, "donAcc_type": "acceptable", "distance": 2.645, "atom1_id": "///A/2352/O2'", "atom2_id": "///A/2353/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4511, "atom1_serNum": 46324, "atom2_serNum": 46342, "donAcc_type": "questionable", "distance": 2.798, "atom1_id": "///A/2352/N2", "atom2_id": "///A/2353/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4512, "atom1_serNum": 46344, "atom2_serNum": 47646, "donAcc_type": "standard", "distance": 2.563, "atom1_id": "///A/2353/O4", "atom2_id": "///A/2413/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4513, "atom1_serNum": 46384, "atom2_serNum": 47668, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///A/2355/O2", "atom2_id": "///A/2414/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4514, "atom1_serNum": 46400, "atom2_serNum": 46415, "donAcc_type": "acceptable", "distance": 2.682, "atom1_id": "///A/2356/O2'", "atom2_id": "///A/2357/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4515, "atom1_serNum": 46400, "atom2_serNum": 46418, "donAcc_type": "acceptable", "distance": 2.803, "atom1_id": "///A/2356/O2'", "atom2_id": "///A/2357/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4516, "atom1_serNum": 46429, "atom2_serNum": 46473, "donAcc_type": "standard", "distance": 2.477, "atom1_id": "///A/2357/N6", "atom2_id": "///A/2359/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4517, "atom1_serNum": 46444, "atom2_serNum": 46454, "donAcc_type": "acceptable", "distance": 2.639, "atom1_id": "///A/2358/O2'", "atom2_id": "///A/2358/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4518, "atom1_serNum": 46444, "atom2_serNum": 46481, "donAcc_type": "acceptable", "distance": 3.062, "atom1_id": "///A/2358/O2'", "atom2_id": "///A/2360/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4519, "atom1_serNum": 46444, "atom2_serNum": 46482, "donAcc_type": "acceptable", "distance": 2.976, "atom1_id": "///A/2358/O2'", "atom2_id": "///A/2360/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4520, "atom1_serNum": 46452, "atom2_serNum": 46519, "donAcc_type": "standard", "distance": 3.917, "atom1_id": "///A/2358/N1", "atom2_id": "///A/2361/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4521, "atom1_serNum": 46466, "atom2_serNum": 73893, "donAcc_type": "acceptable", "distance": 2.345, "atom1_id": "///A/2359/O2'", "atom2_id": "///Q/51/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4522, "atom1_serNum": 46476, "atom2_serNum": 47652, "donAcc_type": "standard", "distance": 3.236, "atom1_id": "///A/2359/N2", "atom2_id": "///A/2414/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4523, "atom1_serNum": 46487, "atom2_serNum": 46581, "donAcc_type": "standard", "distance": 3.357, "atom1_id": "///A/2360/O3'", "atom2_id": "///A/2364/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4524, "atom1_serNum": 46489, "atom2_serNum": 46500, "donAcc_type": "acceptable", "distance": 2.896, "atom1_id": "///A/2360/O2'", "atom2_id": "///A/2360/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4525, "atom1_serNum": 46489, "atom2_serNum": 46516, "donAcc_type": "acceptable", "distance": 2.770, "atom1_id": "///A/2360/O2'", "atom2_id": "///A/2361/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4526, "atom1_serNum": 46489, "atom2_serNum": 46517, "donAcc_type": "acceptable", "distance": 2.894, "atom1_id": "///A/2360/O2'", "atom2_id": "///A/2361/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4527, "atom1_serNum": 46503, "atom2_serNum": 73919, "donAcc_type": "acceptable", "distance": 2.515, "atom1_id": "///A/2361/OP1", "atom2_id": "///Q/54/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 4528, "atom1_serNum": 46508, "atom2_serNum": 46528, "donAcc_type": "questionable", "distance": 2.794, "atom1_id": "///A/2361/O4'", "atom2_id": "///A/2362/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4529, "atom1_serNum": 46519, "atom2_serNum": 46604, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///A/2361/N4", "atom2_id": "///A/2365/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4530, "atom1_serNum": 46523, "atom2_serNum": 46561, "donAcc_type": "standard", "distance": 2.651, "atom1_id": "///A/2362/OP1", "atom2_id": "///A/2363/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4531, "atom1_serNum": 46532, "atom2_serNum": 46565, "donAcc_type": "acceptable", "distance": 2.602, "atom1_id": "///A/2362/O2'", "atom2_id": "///A/2364/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4532, "atom1_serNum": 46532, "atom2_serNum": 46567, "donAcc_type": "acceptable", "distance": 3.042, "atom1_id": "///A/2362/O2'", "atom2_id": "///A/2364/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4533, "atom1_serNum": 46574, "atom2_serNum": 46588, "donAcc_type": "acceptable", "distance": 2.917, "atom1_id": "///A/2364/O2'", "atom2_id": "///A/2365/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4534, "atom1_serNum": 46574, "atom2_serNum": 47642, "donAcc_type": "acceptable", "distance": 2.617, "atom1_id": "///A/2364/O2'", "atom2_id": "///A/2413/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4535, "atom1_serNum": 46574, "atom2_serNum": 47645, "donAcc_type": "acceptable", "distance": 2.942, "atom1_id": "///A/2364/O2'", "atom2_id": "///A/2413/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4536, "atom1_serNum": 46618, "atom2_serNum": 46629, "donAcc_type": "acceptable", "distance": 2.813, "atom1_id": "///A/2366/O2'", "atom2_id": "///A/2366/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4537, "atom1_serNum": 46618, "atom2_serNum": 46632, "donAcc_type": "acceptable", "distance": 2.202, "atom1_id": "///A/2366/O2'", "atom2_id": "///A/2367/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4538, "atom1_serNum": 46618, "atom2_serNum": 46637, "donAcc_type": "acceptable", "distance": 2.297, "atom1_id": "///A/2366/O2'", "atom2_id": "///A/2367/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4539, "atom1_serNum": 46641, "atom2_serNum": 46657, "donAcc_type": "acceptable", "distance": 2.895, "atom1_id": "///A/2367/O2'", "atom2_id": "///A/2368/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4540, "atom1_serNum": 46652, "atom2_serNum": 46674, "donAcc_type": "standard", "distance": 2.516, "atom1_id": "///A/2367/N3", "atom2_id": "///A/2368/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4541, "atom1_serNum": 46679, "atom2_serNum": 46719, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///A/2369/OP2", "atom2_id": "///A/2370/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4542, "atom1_serNum": 46687, "atom2_serNum": 46720, "donAcc_type": "acceptable", "distance": 2.337, "atom1_id": "///A/2369/O2'", "atom2_id": "///A/2370/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4543, "atom1_serNum": 46697, "atom2_serNum": 47420, "donAcc_type": "acceptable", "distance": 3.699, "atom1_id": "///A/2369/N3", "atom2_id": "///A/2403/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4544, "atom1_serNum": 46705, "atom2_serNum": 47416, "donAcc_type": "questionable", "distance": 2.713, "atom1_id": "///A/2370/O4'", "atom2_id": "///A/2403/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4545, "atom1_serNum": 46709, "atom2_serNum": 46728, "donAcc_type": "acceptable", "distance": 2.502, "atom1_id": "///A/2370/O2'", "atom2_id": "///A/2371/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4546, "atom1_serNum": 46732, "atom2_serNum": 46744, "donAcc_type": "acceptable", "distance": 2.682, "atom1_id": "///A/2371/O2'", "atom2_id": "///A/2372/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4547, "atom1_serNum": 46763, "atom2_serNum": 79942, "donAcc_type": "standard", "distance": 2.363, "atom1_id": "///A/2373/OP1", "atom2_id": "///Z/34/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4548, "atom1_serNum": 46765, "atom2_serNum": 46806, "donAcc_type": "questionable", "distance": 2.622, "atom1_id": "///A/2373/O5'", "atom2_id": "///A/2375/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4549, "atom1_serNum": 46770, "atom2_serNum": 46815, "donAcc_type": "acceptable", "distance": 2.470, "atom1_id": "///A/2373/O3'", "atom2_id": "///A/2375/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4550, "atom1_serNum": 46772, "atom2_serNum": 46776, "donAcc_type": "acceptable", "distance": 2.868, "atom1_id": "///A/2373/O2'", "atom2_id": "///A/2373/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4551, "atom1_serNum": 46788, "atom2_serNum": 46830, "donAcc_type": "questionable", "distance": 2.903, "atom1_id": "///A/2374/O4'", "atom2_id": "///A/2376/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4552, "atom1_serNum": 46792, "atom2_serNum": 47556, "donAcc_type": "acceptable", "distance": 2.986, "atom1_id": "///A/2374/O2'", "atom2_id": "///A/2409/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4553, "atom1_serNum": 46792, "atom2_serNum": 47576, "donAcc_type": "acceptable", "distance": 3.383, "atom1_id": "///A/2374/O2'", "atom2_id": "///A/2410/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4554, "atom1_serNum": 46811, "atom2_serNum": 47585, "donAcc_type": "questionable", "distance": 3.023, "atom1_id": "///A/2375/O4'", "atom2_id": "///A/2411/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4555, "atom1_serNum": 46819, "atom2_serNum": 47625, "donAcc_type": "standard", "distance": 3.410, "atom1_id": "///A/2375/N7", "atom2_id": "///A/2412/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4556, "atom1_serNum": 46822, "atom2_serNum": 47607, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///A/2375/N6", "atom2_id": "///A/2412/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4557, "atom1_serNum": 46837, "atom2_serNum": 46849, "donAcc_type": "acceptable", "distance": 2.652, "atom1_id": "///A/2376/O2'", "atom2_id": "///A/2377/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4558, "atom1_serNum": 46841, "atom2_serNum": 47339, "donAcc_type": "standard", "distance": 2.751, "atom1_id": "///A/2376/O2", "atom2_id": "///A/2399/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4559, "atom1_serNum": 46842, "atom2_serNum": 47337, "donAcc_type": "standard", "distance": 2.834, "atom1_id": "///A/2376/N3", "atom2_id": "///A/2399/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4560, "atom1_serNum": 46844, "atom2_serNum": 47336, "donAcc_type": "standard", "distance": 2.831, "atom1_id": "///A/2376/N4", "atom2_id": "///A/2399/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4561, "atom1_serNum": 46844, "atom2_serNum": 47577, "donAcc_type": "standard", "distance": 2.745, "atom1_id": "///A/2376/N4", "atom2_id": "///A/2410/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4562, "atom1_serNum": 46857, "atom2_serNum": 46868, "donAcc_type": "acceptable", "distance": 3.036, "atom1_id": "///A/2377/O2'", "atom2_id": "///A/2378/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4563, "atom1_serNum": 46862, "atom2_serNum": 47315, "donAcc_type": "standard", "distance": 2.832, "atom1_id": "///A/2377/N3", "atom2_id": "///A/2398/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4564, "atom1_serNum": 46864, "atom2_serNum": 47314, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///A/2377/O4", "atom2_id": "///A/2398/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4565, "atom1_serNum": 46864, "atom2_serNum": 47579, "donAcc_type": "standard", "distance": 2.831, "atom1_id": "///A/2377/O4", "atom2_id": "///A/2410/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4566, "atom1_serNum": 46881, "atom2_serNum": 47314, "donAcc_type": "standard", "distance": 2.593, "atom1_id": "///A/2378/N7", "atom2_id": "///A/2398/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4567, "atom1_serNum": 46884, "atom2_serNum": 47287, "donAcc_type": "acceptable", "distance": 3.247, "atom1_id": "///A/2378/O6", "atom2_id": "///A/2397/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4568, "atom1_serNum": 46904, "atom2_serNum": 47274, "donAcc_type": "standard", "distance": 2.629, "atom1_id": "///A/2379/O2", "atom2_id": "///A/2396/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4569, "atom1_serNum": 46904, "atom2_serNum": 47291, "donAcc_type": "questionable", "distance": 2.720, "atom1_id": "///A/2379/O2", "atom2_id": "///A/2397/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4570, "atom1_serNum": 46905, "atom2_serNum": 47272, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///A/2379/N3", "atom2_id": "///A/2396/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4571, "atom1_serNum": 46907, "atom2_serNum": 47271, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///A/2379/N4", "atom2_id": "///A/2396/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4572, "atom1_serNum": 46918, "atom2_serNum": 47249, "donAcc_type": "standard", "distance": 3.203, "atom1_id": "///A/2380/O3'", "atom2_id": "///A/2395/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4573, "atom1_serNum": 46920, "atom2_serNum": 46931, "donAcc_type": "acceptable", "distance": 2.985, "atom1_id": "///A/2380/O2'", "atom2_id": "///A/2380/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4574, "atom1_serNum": 46920, "atom2_serNum": 46947, "donAcc_type": "acceptable", "distance": 3.105, "atom1_id": "///A/2380/O2'", "atom2_id": "///A/2381/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4575, "atom1_serNum": 46934, "atom2_serNum": 47249, "donAcc_type": "standard", "distance": 2.790, "atom1_id": "///A/2381/OP1", "atom2_id": "///A/2395/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4576, "atom1_serNum": 46936, "atom2_serNum": 47249, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///A/2381/O5'", "atom2_id": "///A/2395/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4577, "atom1_serNum": 46943, "atom2_serNum": 46956, "donAcc_type": "acceptable", "distance": 2.407, "atom1_id": "///A/2381/O2'", "atom2_id": "///A/2382/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4578, "atom1_serNum": 46943, "atom2_serNum": 73825, "donAcc_type": "acceptable", "distance": 3.482, "atom1_id": "///A/2381/O2'", "atom2_id": "///Q/40/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 4579, "atom1_serNum": 46965, "atom2_serNum": 73837, "donAcc_type": "acceptable", "distance": 3.483, "atom1_id": "///A/2382/O2'", "atom2_id": "///Q/43/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4580, "atom1_serNum": 46995, "atom2_serNum": 47186, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///A/2383/N6", "atom2_id": "///A/2392/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4581, "atom1_serNum": 46996, "atom2_serNum": 47184, "donAcc_type": "standard", "distance": 3.060, "atom1_id": "///A/2383/N1", "atom2_id": "///A/2392/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4582, "atom1_serNum": 46996, "atom2_serNum": 47204, "donAcc_type": "questionable", "distance": 2.876, "atom1_id": "///A/2383/N1", "atom2_id": "///A/2393/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4583, "atom1_serNum": 47014, "atom2_serNum": 47166, "donAcc_type": "standard", "distance": 2.841, "atom1_id": "///A/2384/O2", "atom2_id": "///A/2391/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4584, "atom1_serNum": 47015, "atom2_serNum": 47164, "donAcc_type": "standard", "distance": 2.955, "atom1_id": "///A/2384/N3", "atom2_id": "///A/2391/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4585, "atom1_serNum": 47017, "atom2_serNum": 47163, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///A/2384/N4", "atom2_id": "///A/2391/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4586, "atom1_serNum": 47017, "atom2_serNum": 47186, "donAcc_type": "standard", "distance": 3.464, "atom1_id": "///A/2384/N4", "atom2_id": "///A/2392/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4587, "atom1_serNum": 47030, "atom2_serNum": 47061, "donAcc_type": "acceptable", "distance": 3.229, "atom1_id": "///A/2385/O2'", "atom2_id": "///A/2387/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4588, "atom1_serNum": 47030, "atom2_serNum": 47062, "donAcc_type": "acceptable", "distance": 3.596, "atom1_id": "///A/2385/O2'", "atom2_id": "///A/2387/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4589, "atom1_serNum": 47034, "atom2_serNum": 47141, "donAcc_type": "standard", "distance": 3.214, "atom1_id": "///A/2385/O2", "atom2_id": "///A/2390/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4590, "atom1_serNum": 47050, "atom2_serNum": 47068, "donAcc_type": "acceptable", "distance": 2.886, "atom1_id": "///A/2386/O2'", "atom2_id": "///A/2387/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4591, "atom1_serNum": 47050, "atom2_serNum": 47083, "donAcc_type": "acceptable", "distance": 2.675, "atom1_id": "///A/2386/O2'", "atom2_id": "///A/2388/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4592, "atom1_serNum": 47070, "atom2_serNum": 47088, "donAcc_type": "acceptable", "distance": 2.510, "atom1_id": "///A/2387/O2'", "atom2_id": "///A/2388/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4593, "atom1_serNum": 47156, "atom2_serNum": 47175, "donAcc_type": "acceptable", "distance": 2.888, "atom1_id": "///A/2391/O2'", "atom2_id": "///A/2392/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4594, "atom1_serNum": 47179, "atom2_serNum": 47195, "donAcc_type": "acceptable", "distance": 2.843, "atom1_id": "///A/2392/O2'", "atom2_id": "///A/2393/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4595, "atom1_serNum": 47219, "atom2_serNum": 47230, "donAcc_type": "acceptable", "distance": 2.617, "atom1_id": "///A/2394/O2'", "atom2_id": "///A/2394/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4596, "atom1_serNum": 47219, "atom2_serNum": 47234, "donAcc_type": "acceptable", "distance": 2.683, "atom1_id": "///A/2394/O2'", "atom2_id": "///A/2395/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4597, "atom1_serNum": 47219, "atom2_serNum": 47235, "donAcc_type": "acceptable", "distance": 2.549, "atom1_id": "///A/2394/O2'", "atom2_id": "///A/2395/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4598, "atom1_serNum": 47271, "atom2_serNum": 47294, "donAcc_type": "standard", "distance": 3.138, "atom1_id": "///A/2396/O6", "atom2_id": "///A/2397/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4599, "atom1_serNum": 47272, "atom2_serNum": 47292, "donAcc_type": "standard", "distance": 2.825, "atom1_id": "///A/2396/N1", "atom2_id": "///A/2397/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4600, "atom1_serNum": 47287, "atom2_serNum": 47311, "donAcc_type": "acceptable", "distance": 2.504, "atom1_id": "///A/2397/O2'", "atom2_id": "///A/2398/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4601, "atom1_serNum": 47307, "atom2_serNum": 47322, "donAcc_type": "acceptable", "distance": 2.301, "atom1_id": "///A/2398/O2'", "atom2_id": "///A/2399/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4602, "atom1_serNum": 47307, "atom2_serNum": 47362, "donAcc_type": "acceptable", "distance": 3.798, "atom1_id": "///A/2398/O2'", "atom2_id": "///A/2400/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4603, "atom1_serNum": 47329, "atom2_serNum": 47345, "donAcc_type": "acceptable", "distance": 2.282, "atom1_id": "///A/2399/O2'", "atom2_id": "///A/2400/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4604, "atom1_serNum": 47329, "atom2_serNum": 47362, "donAcc_type": "acceptable", "distance": 3.140, "atom1_id": "///A/2399/O2'", "atom2_id": "///A/2400/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4605, "atom1_serNum": 47329, "atom2_serNum": 47363, "donAcc_type": "acceptable", "distance": 3.105, "atom1_id": "///A/2399/O2'", "atom2_id": "///A/2400/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4606, "atom1_serNum": 47329, "atom2_serNum": 47382, "donAcc_type": "acceptable", "distance": 2.946, "atom1_id": "///A/2399/O2'", "atom2_id": "///A/2401/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4607, "atom1_serNum": 47356, "atom2_serNum": 47405, "donAcc_type": "standard", "distance": 2.309, "atom1_id": "///A/2400/N7", "atom2_id": "///A/2402/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4608, "atom1_serNum": 47375, "atom2_serNum": 47389, "donAcc_type": "acceptable", "distance": 2.350, "atom1_id": "///A/2401/O2'", "atom2_id": "///A/2402/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4609, "atom1_serNum": 47385, "atom2_serNum": 47559, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///A/2401/N2", "atom2_id": "///A/2409/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4610, "atom1_serNum": 47386, "atom2_serNum": 47405, "donAcc_type": "standard", "distance": 2.370, "atom1_id": "///A/2401/N3", "atom2_id": "///A/2402/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4611, "atom1_serNum": 47398, "atom2_serNum": 47411, "donAcc_type": "acceptable", "distance": 2.323, "atom1_id": "///A/2402/O2'", "atom2_id": "///A/2403/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4612, "atom1_serNum": 47405, "atom2_serNum": 47559, "donAcc_type": "standard", "distance": 2.684, "atom1_id": "///A/2402/N6", "atom2_id": "///A/2409/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4613, "atom1_serNum": 47431, "atom2_serNum": 47470, "donAcc_type": "standard", "distance": 2.295, "atom1_id": "///A/2404/OP1", "atom2_id": "///A/2405/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4614, "atom1_serNum": 47440, "atom2_serNum": 47514, "donAcc_type": "acceptable", "distance": 3.032, "atom1_id": "///A/2404/O2'", "atom2_id": "///A/2407/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4615, "atom1_serNum": 47440, "atom2_serNum": 47515, "donAcc_type": "acceptable", "distance": 2.466, "atom1_id": "///A/2404/O2'", "atom2_id": "///A/2407/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4616, "atom1_serNum": 47440, "atom2_serNum": 47539, "donAcc_type": "acceptable", "distance": 3.331, "atom1_id": "///A/2404/O2'", "atom2_id": "///A/2408/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4617, "atom1_serNum": 47455, "atom2_serNum": 47514, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///A/2405/OP2", "atom2_id": "///A/2407/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4618, "atom1_serNum": 47456, "atom2_serNum": 47514, "donAcc_type": "standard", "distance": 3.199, "atom1_id": "///A/2405/O5'", "atom2_id": "///A/2407/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4619, "atom1_serNum": 47463, "atom2_serNum": 47515, "donAcc_type": "acceptable", "distance": 2.708, "atom1_id": "///A/2405/O2'", "atom2_id": "///A/2407/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4620, "atom1_serNum": 47485, "atom2_serNum": 47500, "donAcc_type": "acceptable", "distance": 2.856, "atom1_id": "///A/2406/O2'", "atom2_id": "///A/2407/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4621, "atom1_serNum": 47489, "atom2_serNum": 76504, "donAcc_type": "acceptable", "distance": 2.315, "atom1_id": "///A/2406/N7", "atom2_id": "///V/102/OH", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 4622, "atom1_serNum": 47492, "atom2_serNum": 76504, "donAcc_type": "acceptable", "distance": 3.098, "atom1_id": "///A/2406/N6", "atom2_id": "///V/102/OH", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 4623, "atom1_serNum": 47552, "atom2_serNum": 47565, "donAcc_type": "acceptable", "distance": 3.084, "atom1_id": "///A/2409/O2'", "atom2_id": "///A/2410/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4624, "atom1_serNum": 47552, "atom2_serNum": 47576, "donAcc_type": "acceptable", "distance": 3.283, "atom1_id": "///A/2409/O2'", "atom2_id": "///A/2410/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4625, "atom1_serNum": 47572, "atom2_serNum": 47584, "donAcc_type": "acceptable", "distance": 2.916, "atom1_id": "///A/2410/O2'", "atom2_id": "///A/2411/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4626, "atom1_serNum": 47592, "atom2_serNum": 47607, "donAcc_type": "acceptable", "distance": 2.272, "atom1_id": "///A/2411/O2'", "atom2_id": "///A/2412/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4627, "atom1_serNum": 47592, "atom2_serNum": 47611, "donAcc_type": "acceptable", "distance": 3.189, "atom1_id": "///A/2411/O2'", "atom2_id": "///A/2412/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4628, "atom1_serNum": 47606, "atom2_serNum": 47625, "donAcc_type": "standard", "distance": 2.990, "atom1_id": "///A/2412/OP1", "atom2_id": "///A/2412/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4629, "atom1_serNum": 47607, "atom2_serNum": 47625, "donAcc_type": "standard", "distance": 3.329, "atom1_id": "///A/2412/OP2", "atom2_id": "///A/2412/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4630, "atom1_serNum": 47615, "atom2_serNum": 47629, "donAcc_type": "acceptable", "distance": 2.171, "atom1_id": "///A/2412/O2'", "atom2_id": "///A/2413/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4631, "atom1_serNum": 47629, "atom2_serNum": 47648, "donAcc_type": "standard", "distance": 2.276, "atom1_id": "///A/2413/OP1", "atom2_id": "///A/2413/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4632, "atom1_serNum": 47638, "atom2_serNum": 47652, "donAcc_type": "acceptable", "distance": 2.520, "atom1_id": "///A/2413/O2'", "atom2_id": "///A/2414/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4633, "atom1_serNum": 47668, "atom2_serNum": 47708, "donAcc_type": "standard", "distance": 3.358, "atom1_id": "///A/2414/N4", "atom2_id": "///A/2416/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4634, "atom1_serNum": 47721, "atom2_serNum": 47736, "donAcc_type": "acceptable", "distance": 2.717, "atom1_id": "///A/2417/O2'", "atom2_id": "///A/2418/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4635, "atom1_serNum": 47734, "atom2_serNum": 47777, "donAcc_type": "questionable", "distance": 3.338, "atom1_id": "///A/2418/OP1", "atom2_id": "///A/2420/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4636, "atom1_serNum": 47796, "atom2_serNum": 48556, "donAcc_type": "acceptable", "distance": 3.999, "atom1_id": "///A/2420/N2", "atom2_id": "///A/2456/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4637, "atom1_serNum": 47801, "atom2_serNum": 47878, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///A/2421/OP2", "atom2_id": "///A/2424/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4638, "atom1_serNum": 47802, "atom2_serNum": 47878, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/2421/O5'", "atom2_id": "///A/2424/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4639, "atom1_serNum": 47802, "atom2_serNum": 48439, "donAcc_type": "standard", "distance": 3.242, "atom1_id": "///A/2421/O5'", "atom2_id": "///A/2450/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4640, "atom1_serNum": 47844, "atom2_serNum": 47871, "donAcc_type": "acceptable", "distance": 3.262, "atom1_id": "///A/2423/O5'", "atom2_id": "///A/2424/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4641, "atom1_serNum": 47844, "atom2_serNum": 47882, "donAcc_type": "questionable", "distance": 3.018, "atom1_id": "///A/2423/O5'", "atom2_id": "///A/2425/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4642, "atom1_serNum": 47851, "atom2_serNum": 47863, "donAcc_type": "acceptable", "distance": 3.003, "atom1_id": "///A/2423/O2'", "atom2_id": "///A/2424/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4643, "atom1_serNum": 47858, "atom2_serNum": 48606, "donAcc_type": "standard", "distance": 3.254, "atom1_id": "///A/2423/N4", "atom2_id": "///A/2458/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4644, "atom1_serNum": 47871, "atom2_serNum": 47875, "donAcc_type": "acceptable", "distance": 2.754, "atom1_id": "///A/2424/O2'", "atom2_id": "///A/2424/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4645, "atom1_serNum": 47871, "atom2_serNum": 47882, "donAcc_type": "acceptable", "distance": 3.025, "atom1_id": "///A/2424/O2'", "atom2_id": "///A/2425/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4646, "atom1_serNum": 47878, "atom2_serNum": 48429, "donAcc_type": "acceptable", "distance": 2.483, "atom1_id": "///A/2424/N4", "atom2_id": "///A/2450/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4647, "atom1_serNum": 47891, "atom2_serNum": 47907, "donAcc_type": "acceptable", "distance": 2.474, "atom1_id": "///A/2425/O2'", "atom2_id": "///A/2426/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4648, "atom1_serNum": 47895, "atom2_serNum": 48396, "donAcc_type": "questionable", "distance": 2.828, "atom1_id": "///A/2425/N7", "atom2_id": "///A/2448/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4649, "atom1_serNum": 47898, "atom2_serNum": 48436, "donAcc_type": "questionable", "distance": 2.741, "atom1_id": "///A/2425/O6", "atom2_id": "///A/2450/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4650, "atom1_serNum": 47899, "atom2_serNum": 48433, "donAcc_type": "standard", "distance": 2.270, "atom1_id": "///A/2425/N1", "atom2_id": "///A/2450/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4651, "atom1_serNum": 47902, "atom2_serNum": 47922, "donAcc_type": "standard", "distance": 2.321, "atom1_id": "///A/2425/N3", "atom2_id": "///A/2426/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4652, "atom1_serNum": 47924, "atom2_serNum": 47944, "donAcc_type": "standard", "distance": 2.235, "atom1_id": "///A/2426/N2", "atom2_id": "///A/2427/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4653, "atom1_serNum": 47937, "atom2_serNum": 47953, "donAcc_type": "acceptable", "distance": 2.924, "atom1_id": "///A/2427/O2'", "atom2_id": "///A/2428/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4654, "atom1_serNum": 47942, "atom2_serNum": 48393, "donAcc_type": "standard", "distance": 2.662, "atom1_id": "///A/2427/N3", "atom2_id": "///A/2448/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4655, "atom1_serNum": 47944, "atom2_serNum": 48416, "donAcc_type": "standard", "distance": 2.388, "atom1_id": "///A/2427/O4", "atom2_id": "///A/2449/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4656, "atom1_serNum": 47948, "atom2_serNum": 81469, "donAcc_type": "standard", "distance": 2.438, "atom1_id": "///A/2428/OP1", "atom2_id": "///W/502/N2", "atom_pair": "O:N", "residue_pair": "nt:ligand" }, { "index": 4657, "atom1_serNum": 47990, "atom2_serNum": 48347, "donAcc_type": "acceptable", "distance": 2.386, "atom1_id": "///A/2429/N2", "atom2_id": "///A/2446/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4658, "atom1_serNum": 47990, "atom2_serNum": 48377, "donAcc_type": "standard", "distance": 3.079, "atom1_id": "///A/2429/N2", "atom2_id": "///A/2447/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4659, "atom1_serNum": 48003, "atom2_serNum": 48035, "donAcc_type": "acceptable", "distance": 3.627, "atom1_id": "///A/2430/O2'", "atom2_id": "///A/2432/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4660, "atom1_serNum": 48007, "atom2_serNum": 48351, "donAcc_type": "questionable", "distance": 3.220, "atom1_id": "///A/2430/O2", "atom2_id": "///A/2446/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4661, "atom1_serNum": 48008, "atom2_serNum": 48352, "donAcc_type": "standard", "distance": 2.714, "atom1_id": "///A/2430/N3", "atom2_id": "///A/2446/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4662, "atom1_serNum": 48010, "atom2_serNum": 48354, "donAcc_type": "standard", "distance": 2.305, "atom1_id": "///A/2430/O4", "atom2_id": "///A/2446/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4663, "atom1_serNum": 48047, "atom2_serNum": 48291, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///A/2432/O2", "atom2_id": "///A/2443/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4664, "atom1_serNum": 48048, "atom2_serNum": 48289, "donAcc_type": "standard", "distance": 2.980, "atom1_id": "///A/2432/N3", "atom2_id": "///A/2443/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4665, "atom1_serNum": 48050, "atom2_serNum": 48288, "donAcc_type": "standard", "distance": 2.789, "atom1_id": "///A/2432/N4", "atom2_id": "///A/2443/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4666, "atom1_serNum": 48050, "atom2_serNum": 48311, "donAcc_type": "standard", "distance": 2.747, "atom1_id": "///A/2432/N4", "atom2_id": "///A/2444/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4667, "atom1_serNum": 48067, "atom2_serNum": 48268, "donAcc_type": "standard", "distance": 2.740, "atom1_id": "///A/2433/O2", "atom2_id": "///A/2442/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4668, "atom1_serNum": 48068, "atom2_serNum": 48266, "donAcc_type": "standard", "distance": 2.859, "atom1_id": "///A/2433/N3", "atom2_id": "///A/2442/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4669, "atom1_serNum": 48070, "atom2_serNum": 48265, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/2433/N4", "atom2_id": "///A/2442/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4670, "atom1_serNum": 48070, "atom2_serNum": 48288, "donAcc_type": "standard", "distance": 2.469, "atom1_id": "///A/2433/N4", "atom2_id": "///A/2443/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4671, "atom1_serNum": 48083, "atom2_serNum": 48097, "donAcc_type": "acceptable", "distance": 2.814, "atom1_id": "///A/2434/O2'", "atom2_id": "///A/2435/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4672, "atom1_serNum": 48083, "atom2_serNum": 48098, "donAcc_type": "acceptable", "distance": 2.985, "atom1_id": "///A/2434/O2'", "atom2_id": "///A/2435/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4673, "atom1_serNum": 48083, "atom2_serNum": 48221, "donAcc_type": "acceptable", "distance": 3.286, "atom1_id": "///A/2434/O2'", "atom2_id": "///A/2440/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4674, "atom1_serNum": 48093, "atom2_serNum": 48240, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///A/2434/N2", "atom2_id": "///A/2441/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4675, "atom1_serNum": 48094, "atom2_serNum": 48243, "donAcc_type": "standard", "distance": 2.773, "atom1_id": "///A/2434/N3", "atom2_id": "///A/2441/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4676, "atom1_serNum": 48098, "atom2_serNum": 48221, "donAcc_type": "standard", "distance": 3.193, "atom1_id": "///A/2435/OP2", "atom2_id": "///A/2440/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4677, "atom1_serNum": 48106, "atom2_serNum": 48119, "donAcc_type": "acceptable", "distance": 2.581, "atom1_id": "///A/2435/O2'", "atom2_id": "///A/2436/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4678, "atom1_serNum": 48126, "atom2_serNum": 48139, "donAcc_type": "acceptable", "distance": 2.323, "atom1_id": "///A/2436/O2'", "atom2_id": "///A/2437/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4679, "atom1_serNum": 48319, "atom2_serNum": 67474, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///A/2445/OP2", "atom2_id": "///I/64/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4680, "atom1_serNum": 48327, "atom2_serNum": 48343, "donAcc_type": "acceptable", "distance": 2.968, "atom1_id": "///A/2445/O2'", "atom2_id": "///A/2446/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4681, "atom1_serNum": 48367, "atom2_serNum": 48382, "donAcc_type": "acceptable", "distance": 2.632, "atom1_id": "///A/2447/O2'", "atom2_id": "///A/2448/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4682, "atom1_serNum": 48367, "atom2_serNum": 48385, "donAcc_type": "acceptable", "distance": 2.647, "atom1_id": "///A/2447/O2'", "atom2_id": "///A/2448/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4683, "atom1_serNum": 48387, "atom2_serNum": 76762, "donAcc_type": "standard", "distance": 3.303, "atom1_id": "///A/2448/O3'", "atom2_id": "///W/22/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4684, "atom1_serNum": 48389, "atom2_serNum": 77621, "donAcc_type": "acceptable", "distance": 2.514, "atom1_id": "///A/2448/O2'", "atom2_id": "///W/147/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 4685, "atom1_serNum": 48400, "atom2_serNum": 76762, "donAcc_type": "standard", "distance": 3.533, "atom1_id": "///A/2449/OP1", "atom2_id": "///W/22/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4686, "atom1_serNum": 48409, "atom2_serNum": 48421, "donAcc_type": "acceptable", "distance": 2.592, "atom1_id": "///A/2449/O2'", "atom2_id": "///A/2450/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4687, "atom1_serNum": 48429, "atom2_serNum": 48443, "donAcc_type": "acceptable", "distance": 2.550, "atom1_id": "///A/2450/O2'", "atom2_id": "///A/2451/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4688, "atom1_serNum": 48452, "atom2_serNum": 48456, "donAcc_type": "acceptable", "distance": 2.920, "atom1_id": "///A/2451/O2'", "atom2_id": "///A/2451/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4689, "atom1_serNum": 48452, "atom2_serNum": 48463, "donAcc_type": "acceptable", "distance": 2.293, "atom1_id": "///A/2451/O2'", "atom2_id": "///A/2452/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4690, "atom1_serNum": 48472, "atom2_serNum": 48503, "donAcc_type": "acceptable", "distance": 2.982, "atom1_id": "///A/2452/O2'", "atom2_id": "///A/2454/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4691, "atom1_serNum": 48472, "atom2_serNum": 48544, "donAcc_type": "acceptable", "distance": 2.793, "atom1_id": "///A/2452/O2'", "atom2_id": "///A/2455/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4692, "atom1_serNum": 48476, "atom2_serNum": 48512, "donAcc_type": "acceptable", "distance": 2.993, "atom1_id": "///A/2452/O2", "atom2_id": "///A/2454/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4693, "atom1_serNum": 48492, "atom2_serNum": 48567, "donAcc_type": "acceptable", "distance": 3.313, "atom1_id": "///A/2453/O2'", "atom2_id": "///A/2457/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4694, "atom1_serNum": 48496, "atom2_serNum": 48534, "donAcc_type": "acceptable", "distance": 2.524, "atom1_id": "///A/2453/O2", "atom2_id": "///A/2455/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4695, "atom1_serNum": 48499, "atom2_serNum": 48622, "donAcc_type": "acceptable", "distance": 3.268, "atom1_id": "///A/2453/N4", "atom2_id": "///A/2459/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4696, "atom1_serNum": 48508, "atom2_serNum": 48552, "donAcc_type": "questionable", "distance": 2.871, "atom1_id": "///A/2454/O4'", "atom2_id": "///A/2456/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4697, "atom1_serNum": 48512, "atom2_serNum": 48525, "donAcc_type": "acceptable", "distance": 2.657, "atom1_id": "///A/2454/O2'", "atom2_id": "///A/2455/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4698, "atom1_serNum": 48532, "atom2_serNum": 48599, "donAcc_type": "acceptable", "distance": 3.173, "atom1_id": "///A/2455/O3'", "atom2_id": "///A/2458/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4699, "atom1_serNum": 48534, "atom2_serNum": 48547, "donAcc_type": "acceptable", "distance": 2.617, "atom1_id": "///A/2455/O2'", "atom2_id": "///A/2456/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4700, "atom1_serNum": 48534, "atom2_serNum": 48599, "donAcc_type": "acceptable", "distance": 2.629, "atom1_id": "///A/2455/O2'", "atom2_id": "///A/2458/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4701, "atom1_serNum": 48538, "atom2_serNum": 48636, "donAcc_type": "questionable", "distance": 2.748, "atom1_id": "///A/2455/N7", "atom2_id": "///A/2460/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4702, "atom1_serNum": 48541, "atom2_serNum": 48635, "donAcc_type": "standard", "distance": 2.996, "atom1_id": "///A/2455/N6", "atom2_id": "///A/2460/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4703, "atom1_serNum": 48548, "atom2_serNum": 48599, "donAcc_type": "acceptable", "distance": 2.957, "atom1_id": "///A/2456/OP2", "atom2_id": "///A/2458/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4704, "atom1_serNum": 48569, "atom2_serNum": 48610, "donAcc_type": "questionable", "distance": 2.744, "atom1_id": "///A/2457/O5'", "atom2_id": "///A/2458/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4705, "atom1_serNum": 48599, "atom2_serNum": 48613, "donAcc_type": "acceptable", "distance": 2.587, "atom1_id": "///A/2458/O2'", "atom2_id": "///A/2459/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4706, "atom1_serNum": 48644, "atom2_serNum": 48668, "donAcc_type": "acceptable", "distance": 3.061, "atom1_id": "///A/2460/O2'", "atom2_id": "///A/2461/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4707, "atom1_serNum": 48649, "atom2_serNum": 48678, "donAcc_type": "standard", "distance": 2.476, "atom1_id": "///A/2460/N3", "atom2_id": "///A/2462/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4708, "atom1_serNum": 48686, "atom2_serNum": 48701, "donAcc_type": "acceptable", "distance": 2.830, "atom1_id": "///A/2462/O2'", "atom2_id": "///A/2463/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4709, "atom1_serNum": 48708, "atom2_serNum": 48723, "donAcc_type": "acceptable", "distance": 2.704, "atom1_id": "///A/2463/O2'", "atom2_id": "///A/2464/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4710, "atom1_serNum": 48730, "atom2_serNum": 48745, "donAcc_type": "acceptable", "distance": 2.883, "atom1_id": "///A/2464/O2'", "atom2_id": "///A/2465/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4711, "atom1_serNum": 48730, "atom2_serNum": 51121, "donAcc_type": "acceptable", "distance": 3.017, "atom1_id": "///A/2464/O2'", "atom2_id": "///A/2627/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4712, "atom1_serNum": 48740, "atom2_serNum": 51123, "donAcc_type": "questionable", "distance": 3.311, "atom1_id": "///A/2464/N3", "atom2_id": "///A/2627/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4713, "atom1_serNum": 48773, "atom2_serNum": 51149, "donAcc_type": "questionable", "distance": 2.762, "atom1_id": "///A/2466/O3'", "atom2_id": "///A/2629/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4714, "atom1_serNum": 48793, "atom2_serNum": 48850, "donAcc_type": "questionable", "distance": 2.883, "atom1_id": "///A/2467/O3'", "atom2_id": "///A/2470/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4715, "atom1_serNum": 48795, "atom2_serNum": 48853, "donAcc_type": "acceptable", "distance": 2.807, "atom1_id": "///A/2467/O2'", "atom2_id": "///A/2470/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4716, "atom1_serNum": 48807, "atom2_serNum": 48850, "donAcc_type": "questionable", "distance": 2.744, "atom1_id": "///A/2468/OP2", "atom2_id": "///A/2470/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4717, "atom1_serNum": 48808, "atom2_serNum": 48849, "donAcc_type": "questionable", "distance": 2.614, "atom1_id": "///A/2468/O5'", "atom2_id": "///A/2470/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4718, "atom1_serNum": 48811, "atom2_serNum": 48835, "donAcc_type": "questionable", "distance": 3.365, "atom1_id": "///A/2468/O4'", "atom2_id": "///A/2469/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4719, "atom1_serNum": 48819, "atom2_serNum": 50855, "donAcc_type": "acceptable", "distance": 3.297, "atom1_id": "///A/2468/N7", "atom2_id": "///A/2615/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4720, "atom1_serNum": 48837, "atom2_serNum": 48848, "donAcc_type": "acceptable", "distance": 2.946, "atom1_id": "///A/2469/O2'", "atom2_id": "///A/2470/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4721, "atom1_serNum": 48909, "atom2_serNum": 49457, "donAcc_type": "questionable", "distance": 2.911, "atom1_id": "///A/2488/OP2", "atom2_id": "///A/2526/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4722, "atom1_serNum": 48917, "atom2_serNum": 48932, "donAcc_type": "acceptable", "distance": 2.665, "atom1_id": "///A/2488/O2'", "atom2_id": "///A/2489/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4723, "atom1_serNum": 48925, "atom2_serNum": 49456, "donAcc_type": "standard", "distance": 2.501, "atom1_id": "///A/2488/N1", "atom2_id": "///A/2526/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4724, "atom1_serNum": 48939, "atom2_serNum": 49416, "donAcc_type": "acceptable", "distance": 2.262, "atom1_id": "///A/2489/O2'", "atom2_id": "///A/2524/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4725, "atom1_serNum": 48943, "atom2_serNum": 49391, "donAcc_type": "standard", "distance": 2.721, "atom1_id": "///A/2489/O2", "atom2_id": "///A/2523/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4726, "atom1_serNum": 48955, "atom2_serNum": 49416, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///A/2490/O4'", "atom2_id": "///A/2524/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4727, "atom1_serNum": 48963, "atom2_serNum": 49310, "donAcc_type": "standard", "distance": 2.767, "atom1_id": "///A/2490/O2", "atom2_id": "///A/2519/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4728, "atom1_serNum": 48964, "atom2_serNum": 49308, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///A/2490/N3", "atom2_id": "///A/2519/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4729, "atom1_serNum": 48966, "atom2_serNum": 49307, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///A/2490/N4", "atom2_id": "///A/2519/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4730, "atom1_serNum": 48983, "atom2_serNum": 49287, "donAcc_type": "standard", "distance": 2.553, "atom1_id": "///A/2491/O2", "atom2_id": "///A/2518/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4731, "atom1_serNum": 48986, "atom2_serNum": 49285, "donAcc_type": "standard", "distance": 2.858, "atom1_id": "///A/2491/O4", "atom2_id": "///A/2518/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4732, "atom1_serNum": 49023, "atom2_serNum": 49263, "donAcc_type": "questionable", "distance": 2.910, "atom1_id": "///A/2493/O2", "atom2_id": "///A/2517/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4733, "atom1_serNum": 49024, "atom2_serNum": 49262, "donAcc_type": "standard", "distance": 2.459, "atom1_id": "///A/2493/N3", "atom2_id": "///A/2517/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4734, "atom1_serNum": 49039, "atom2_serNum": 49043, "donAcc_type": "acceptable", "distance": 2.891, "atom1_id": "///A/2494/O2'", "atom2_id": "///A/2494/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4735, "atom1_serNum": 49039, "atom2_serNum": 49052, "donAcc_type": "acceptable", "distance": 2.439, "atom1_id": "///A/2494/O2'", "atom2_id": "///A/2495/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4736, "atom1_serNum": 49039, "atom2_serNum": 49055, "donAcc_type": "acceptable", "distance": 2.538, "atom1_id": "///A/2494/O2'", "atom2_id": "///A/2495/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4737, "atom1_serNum": 49043, "atom2_serNum": 49242, "donAcc_type": "standard", "distance": 2.677, "atom1_id": "///A/2494/O2", "atom2_id": "///A/2516/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4738, "atom1_serNum": 49044, "atom2_serNum": 49240, "donAcc_type": "standard", "distance": 2.846, "atom1_id": "///A/2494/N3", "atom2_id": "///A/2516/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4739, "atom1_serNum": 49044, "atom2_serNum": 49263, "donAcc_type": "questionable", "distance": 3.024, "atom1_id": "///A/2494/N3", "atom2_id": "///A/2517/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4740, "atom1_serNum": 49046, "atom2_serNum": 49239, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///A/2494/N4", "atom2_id": "///A/2516/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4741, "atom1_serNum": 49046, "atom2_serNum": 49262, "donAcc_type": "questionable", "distance": 2.782, "atom1_id": "///A/2494/N4", "atom2_id": "///A/2517/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4742, "atom1_serNum": 49046, "atom2_serNum": 49263, "donAcc_type": "standard", "distance": 3.564, "atom1_id": "///A/2494/N4", "atom2_id": "///A/2517/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4743, "atom1_serNum": 49059, "atom2_serNum": 49075, "donAcc_type": "acceptable", "distance": 2.942, "atom1_id": "///A/2495/O2'", "atom2_id": "///A/2496/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4744, "atom1_serNum": 49063, "atom2_serNum": 49217, "donAcc_type": "standard", "distance": 2.204, "atom1_id": "///A/2495/O2", "atom2_id": "///A/2515/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4745, "atom1_serNum": 49063, "atom2_serNum": 49219, "donAcc_type": "standard", "distance": 3.359, "atom1_id": "///A/2495/O2", "atom2_id": "///A/2515/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4746, "atom1_serNum": 49084, "atom2_serNum": 49106, "donAcc_type": "standard", "distance": 2.846, "atom1_id": "///A/2496/N3", "atom2_id": "///A/2497/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4747, "atom1_serNum": 49086, "atom2_serNum": 49193, "donAcc_type": "standard", "distance": 2.492, "atom1_id": "///A/2496/N4", "atom2_id": "///A/2514/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4748, "atom1_serNum": 49086, "atom2_serNum": 49216, "donAcc_type": "standard", "distance": 3.493, "atom1_id": "///A/2496/N4", "atom2_id": "///A/2515/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4749, "atom1_serNum": 49099, "atom2_serNum": 49117, "donAcc_type": "acceptable", "distance": 2.252, "atom1_id": "///A/2497/O2'", "atom2_id": "///A/2498/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4750, "atom1_serNum": 49106, "atom2_serNum": 49190, "donAcc_type": "standard", "distance": 2.551, "atom1_id": "///A/2497/N6", "atom2_id": "///A/2514/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4751, "atom1_serNum": 49121, "atom2_serNum": 49143, "donAcc_type": "acceptable", "distance": 3.680, "atom1_id": "///A/2498/O2'", "atom2_id": "///A/2512/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4752, "atom1_serNum": 49155, "atom2_serNum": 49173, "donAcc_type": "standard", "distance": 2.722, "atom1_id": "///A/2513/OP2", "atom2_id": "///A/2513/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4753, "atom1_serNum": 49178, "atom2_serNum": 49196, "donAcc_type": "standard", "distance": 2.195, "atom1_id": "///A/2514/OP2", "atom2_id": "///A/2514/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4754, "atom1_serNum": 49209, "atom2_serNum": 49225, "donAcc_type": "acceptable", "distance": 2.945, "atom1_id": "///A/2515/O2'", "atom2_id": "///A/2516/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4755, "atom1_serNum": 49232, "atom2_serNum": 49246, "donAcc_type": "acceptable", "distance": 2.684, "atom1_id": "///A/2516/O2'", "atom2_id": "///A/2517/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4756, "atom1_serNum": 49255, "atom2_serNum": 49268, "donAcc_type": "acceptable", "distance": 2.904, "atom1_id": "///A/2517/O2'", "atom2_id": "///A/2518/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4757, "atom1_serNum": 49259, "atom2_serNum": 49281, "donAcc_type": "questionable", "distance": 2.865, "atom1_id": "///A/2517/N7", "atom2_id": "///A/2518/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4758, "atom1_serNum": 49277, "atom2_serNum": 49292, "donAcc_type": "acceptable", "distance": 2.313, "atom1_id": "///A/2518/O2'", "atom2_id": "///A/2519/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4759, "atom1_serNum": 49277, "atom2_serNum": 79093, "donAcc_type": "acceptable", "distance": 2.957, "atom1_id": "///A/2518/O2'", "atom2_id": "///W/357/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4760, "atom1_serNum": 49300, "atom2_serNum": 49319, "donAcc_type": "acceptable", "distance": 2.242, "atom1_id": "///A/2519/O2'", "atom2_id": "///A/2520/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4761, "atom1_serNum": 49315, "atom2_serNum": 79086, "donAcc_type": "standard", "distance": 2.377, "atom1_id": "///A/2520/OP2", "atom2_id": "///W/357/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4762, "atom1_serNum": 49328, "atom2_serNum": 79266, "donAcc_type": "acceptable", "distance": 3.132, "atom1_id": "///A/2520/N3", "atom2_id": "///W/384/OH", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 4763, "atom1_serNum": 49334, "atom2_serNum": 79062, "donAcc_type": "standard", "distance": 2.541, "atom1_id": "///A/2521/OP1", "atom2_id": "///W/353/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4764, "atom1_serNum": 49335, "atom2_serNum": 79084, "donAcc_type": "acceptable", "distance": 2.632, "atom1_id": "///A/2521/OP2", "atom2_id": "///W/356/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 4765, "atom1_serNum": 49335, "atom2_serNum": 79277, "donAcc_type": "acceptable", "distance": 2.357, "atom1_id": "///A/2521/OP2", "atom2_id": "///W/386/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 4766, "atom1_serNum": 49339, "atom2_serNum": 79062, "donAcc_type": "standard", "distance": 3.032, "atom1_id": "///A/2521/O4'", "atom2_id": "///W/353/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4767, "atom1_serNum": 49339, "atom2_serNum": 79282, "donAcc_type": "questionable", "distance": 2.812, "atom1_id": "///A/2521/O4'", "atom2_id": "///W/387/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 4768, "atom1_serNum": 49383, "atom2_serNum": 49399, "donAcc_type": "acceptable", "distance": 2.419, "atom1_id": "///A/2523/O2'", "atom2_id": "///A/2524/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4769, "atom1_serNum": 49390, "atom2_serNum": 79246, "donAcc_type": "questionable", "distance": 3.215, "atom1_id": "///A/2523/O6", "atom2_id": "///W/383/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 4770, "atom1_serNum": 49406, "atom2_serNum": 49422, "donAcc_type": "acceptable", "distance": 2.393, "atom1_id": "///A/2524/O2'", "atom2_id": "///A/2525/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4771, "atom1_serNum": 49406, "atom2_serNum": 49425, "donAcc_type": "acceptable", "distance": 2.226, "atom1_id": "///A/2524/O2'", "atom2_id": "///A/2525/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4772, "atom1_serNum": 49429, "atom2_serNum": 49442, "donAcc_type": "acceptable", "distance": 2.341, "atom1_id": "///A/2525/O2'", "atom2_id": "///A/2526/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4773, "atom1_serNum": 49475, "atom2_serNum": 50462, "donAcc_type": "standard", "distance": 2.570, "atom1_id": "///A/2536/O2", "atom2_id": "///A/2582/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4774, "atom1_serNum": 49487, "atom2_serNum": 50475, "donAcc_type": "acceptable", "distance": 3.025, "atom1_id": "///A/2537/O4'", "atom2_id": "///A/2583/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4775, "atom1_serNum": 49491, "atom2_serNum": 50473, "donAcc_type": "acceptable", "distance": 2.841, "atom1_id": "///A/2537/O2'", "atom2_id": "///A/2583/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4776, "atom1_serNum": 49491, "atom2_serNum": 50475, "donAcc_type": "acceptable", "distance": 2.438, "atom1_id": "///A/2537/O2'", "atom2_id": "///A/2583/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4777, "atom1_serNum": 49568, "atom2_serNum": 62807, "donAcc_type": "standard", "distance": 3.444, "atom1_id": "///A/2541/OP1", "atom2_id": "///D/129/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4778, "atom1_serNum": 49570, "atom2_serNum": 62806, "donAcc_type": "standard", "distance": 3.151, "atom1_id": "///A/2541/O5'", "atom2_id": "///D/128/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4779, "atom1_serNum": 49604, "atom2_serNum": 50842, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///A/2542/N6", "atom2_id": "///A/2600/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4780, "atom1_serNum": 49605, "atom2_serNum": 50840, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///A/2542/N1", "atom2_id": "///A/2600/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4781, "atom1_serNum": 49623, "atom2_serNum": 50820, "donAcc_type": "standard", "distance": 3.143, "atom1_id": "///A/2543/O2", "atom2_id": "///A/2599/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4782, "atom1_serNum": 49623, "atom2_serNum": 50822, "donAcc_type": "standard", "distance": 3.272, "atom1_id": "///A/2543/O2", "atom2_id": "///A/2599/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4783, "atom1_serNum": 49624, "atom2_serNum": 50819, "donAcc_type": "standard", "distance": 2.976, "atom1_id": "///A/2543/N3", "atom2_id": "///A/2599/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4784, "atom1_serNum": 49639, "atom2_serNum": 49655, "donAcc_type": "acceptable", "distance": 3.198, "atom1_id": "///A/2544/O2'", "atom2_id": "///A/2545/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4785, "atom1_serNum": 49643, "atom2_serNum": 50799, "donAcc_type": "standard", "distance": 2.730, "atom1_id": "///A/2544/O2", "atom2_id": "///A/2598/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4786, "atom1_serNum": 49644, "atom2_serNum": 50797, "donAcc_type": "standard", "distance": 2.848, "atom1_id": "///A/2544/N3", "atom2_id": "///A/2598/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4787, "atom1_serNum": 49646, "atom2_serNum": 50796, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///A/2544/N4", "atom2_id": "///A/2598/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4788, "atom1_serNum": 49666, "atom2_serNum": 50776, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///A/2545/O6", "atom2_id": "///A/2597/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4789, "atom1_serNum": 49667, "atom2_serNum": 50774, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///A/2545/N1", "atom2_id": "///A/2597/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4790, "atom1_serNum": 49669, "atom2_serNum": 50773, "donAcc_type": "standard", "distance": 2.831, "atom1_id": "///A/2545/N2", "atom2_id": "///A/2597/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4791, "atom1_serNum": 49682, "atom2_serNum": 49695, "donAcc_type": "acceptable", "distance": 2.633, "atom1_id": "///A/2546/O2'", "atom2_id": "///A/2547/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4792, "atom1_serNum": 49686, "atom2_serNum": 50756, "donAcc_type": "standard", "distance": 2.848, "atom1_id": "///A/2546/O2", "atom2_id": "///A/2596/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4793, "atom1_serNum": 49687, "atom2_serNum": 50754, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///A/2546/N3", "atom2_id": "///A/2596/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4794, "atom1_serNum": 49689, "atom2_serNum": 50753, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///A/2546/N4", "atom2_id": "///A/2596/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4795, "atom1_serNum": 49720, "atom2_serNum": 50219, "donAcc_type": "standard", "distance": 3.371, "atom1_id": "///A/2548/O4'", "atom2_id": "///A/2571/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4796, "atom1_serNum": 49724, "atom2_serNum": 50197, "donAcc_type": "acceptable", "distance": 3.382, "atom1_id": "///A/2548/O2'", "atom2_id": "///A/2570/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4797, "atom1_serNum": 49728, "atom2_serNum": 49771, "donAcc_type": "standard", "distance": 3.323, "atom1_id": "///A/2548/O2", "atom2_id": "///A/2550/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4798, "atom1_serNum": 49744, "atom2_serNum": 50702, "donAcc_type": "acceptable", "distance": 2.446, "atom1_id": "///A/2549/O2'", "atom2_id": "///A/2594/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4799, "atom1_serNum": 49748, "atom2_serNum": 50290, "donAcc_type": "standard", "distance": 2.724, "atom1_id": "///A/2549/O2", "atom2_id": "///A/2574/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4800, "atom1_serNum": 49749, "atom2_serNum": 50288, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///A/2549/N3", "atom2_id": "///A/2574/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4801, "atom1_serNum": 49751, "atom2_serNum": 50220, "donAcc_type": "standard", "distance": 3.962, "atom1_id": "///A/2549/N4", "atom2_id": "///A/2571/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4802, "atom1_serNum": 49751, "atom2_serNum": 50287, "donAcc_type": "standard", "distance": 2.954, "atom1_id": "///A/2549/N4", "atom2_id": "///A/2574/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4803, "atom1_serNum": 49760, "atom2_serNum": 50698, "donAcc_type": "questionable", "distance": 3.241, "atom1_id": "///A/2550/O4'", "atom2_id": "///A/2594/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4804, "atom1_serNum": 49764, "atom2_serNum": 50680, "donAcc_type": "acceptable", "distance": 3.116, "atom1_id": "///A/2550/O2'", "atom2_id": "///A/2593/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4805, "atom1_serNum": 49768, "atom2_serNum": 50267, "donAcc_type": "standard", "distance": 2.788, "atom1_id": "///A/2550/O2", "atom2_id": "///A/2573/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4806, "atom1_serNum": 49769, "atom2_serNum": 50265, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///A/2550/N3", "atom2_id": "///A/2573/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4807, "atom1_serNum": 49771, "atom2_serNum": 50264, "donAcc_type": "standard", "distance": 2.971, "atom1_id": "///A/2550/N4", "atom2_id": "///A/2573/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4808, "atom1_serNum": 49784, "atom2_serNum": 52157, "donAcc_type": "acceptable", "distance": 2.436, "atom1_id": "///A/2551/O2'", "atom2_id": "///A/2676/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4809, "atom1_serNum": 49788, "atom2_serNum": 50242, "donAcc_type": "standard", "distance": 2.714, "atom1_id": "///A/2551/O2", "atom2_id": "///A/2572/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4810, "atom1_serNum": 49789, "atom2_serNum": 50241, "donAcc_type": "standard", "distance": 2.857, "atom1_id": "///A/2551/N3", "atom2_id": "///A/2572/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4811, "atom1_serNum": 49789, "atom2_serNum": 54704, "donAcc_type": "standard", "distance": 3.362, "atom1_id": "///A/2551/N3", "atom2_id": "///A/2794/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4812, "atom1_serNum": 49804, "atom2_serNum": 49823, "donAcc_type": "acceptable", "distance": 3.199, "atom1_id": "///A/2552/O2'", "atom2_id": "///A/2553/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4813, "atom1_serNum": 49804, "atom2_serNum": 54678, "donAcc_type": "acceptable", "distance": 2.519, "atom1_id": "///A/2552/O2'", "atom2_id": "///A/2793/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4814, "atom1_serNum": 49811, "atom2_serNum": 50177, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///A/2552/O6", "atom2_id": "///A/2569/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4815, "atom1_serNum": 49812, "atom2_serNum": 50175, "donAcc_type": "standard", "distance": 2.851, "atom1_id": "///A/2552/N1", "atom2_id": "///A/2569/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4816, "atom1_serNum": 49814, "atom2_serNum": 50174, "donAcc_type": "standard", "distance": 2.731, "atom1_id": "///A/2552/N2", "atom2_id": "///A/2569/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4817, "atom1_serNum": 49823, "atom2_serNum": 54678, "donAcc_type": "acceptable", "distance": 3.054, "atom1_id": "///A/2553/O4'", "atom2_id": "///A/2793/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4818, "atom1_serNum": 49834, "atom2_serNum": 50157, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///A/2553/O6", "atom2_id": "///A/2568/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4819, "atom1_serNum": 49835, "atom2_serNum": 50155, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/2553/N1", "atom2_id": "///A/2568/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4820, "atom1_serNum": 49837, "atom2_serNum": 50154, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///A/2553/N2", "atom2_id": "///A/2568/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4821, "atom1_serNum": 49837, "atom2_serNum": 54194, "donAcc_type": "standard", "distance": 3.806, "atom1_id": "///A/2553/N2", "atom2_id": "///A/2770/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4822, "atom1_serNum": 49857, "atom2_serNum": 50137, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///A/2554/O6", "atom2_id": "///A/2567/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4823, "atom1_serNum": 49858, "atom2_serNum": 50135, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///A/2554/N1", "atom2_id": "///A/2567/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4824, "atom1_serNum": 49860, "atom2_serNum": 50134, "donAcc_type": "standard", "distance": 2.796, "atom1_id": "///A/2554/N2", "atom2_id": "///A/2567/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4825, "atom1_serNum": 49880, "atom2_serNum": 50115, "donAcc_type": "standard", "distance": 2.746, "atom1_id": "///A/2555/O6", "atom2_id": "///A/2566/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4826, "atom1_serNum": 49880, "atom2_serNum": 50117, "donAcc_type": "questionable", "distance": 2.538, "atom1_id": "///A/2555/O6", "atom2_id": "///A/2566/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4827, "atom1_serNum": 49881, "atom2_serNum": 50114, "donAcc_type": "standard", "distance": 3.070, "atom1_id": "///A/2555/N1", "atom2_id": "///A/2566/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4828, "atom1_serNum": 49883, "atom2_serNum": 50114, "donAcc_type": "standard", "distance": 3.188, "atom1_id": "///A/2555/N2", "atom2_id": "///A/2566/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4829, "atom1_serNum": 49900, "atom2_serNum": 50097, "donAcc_type": "standard", "distance": 2.725, "atom1_id": "///A/2556/O2", "atom2_id": "///A/2565/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4830, "atom1_serNum": 49901, "atom2_serNum": 50095, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///A/2556/N3", "atom2_id": "///A/2565/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4831, "atom1_serNum": 49903, "atom2_serNum": 50094, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///A/2556/N4", "atom2_id": "///A/2565/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4832, "atom1_serNum": 49916, "atom2_serNum": 49936, "donAcc_type": "acceptable", "distance": 3.611, "atom1_id": "///A/2557/O2'", "atom2_id": "///A/2558/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4833, "atom1_serNum": 49916, "atom2_serNum": 49950, "donAcc_type": "acceptable", "distance": 3.082, "atom1_id": "///A/2557/O2'", "atom2_id": "///A/2559/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4834, "atom1_serNum": 49920, "atom2_serNum": 50071, "donAcc_type": "questionable", "distance": 2.086, "atom1_id": "///A/2557/O2", "atom2_id": "///A/2564/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4835, "atom1_serNum": 49920, "atom2_serNum": 50072, "donAcc_type": "standard", "distance": 2.582, "atom1_id": "///A/2557/O2", "atom2_id": "///A/2564/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4836, "atom1_serNum": 49921, "atom2_serNum": 50071, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///A/2557/N3", "atom2_id": "///A/2564/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4837, "atom1_serNum": 49936, "atom2_serNum": 49950, "donAcc_type": "acceptable", "distance": 3.169, "atom1_id": "///A/2558/O2'", "atom2_id": "///A/2559/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4838, "atom1_serNum": 49959, "atom2_serNum": 50051, "donAcc_type": "acceptable", "distance": 2.964, "atom1_id": "///A/2559/O2'", "atom2_id": "///A/2563/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4839, "atom1_serNum": 49979, "atom2_serNum": 52396, "donAcc_type": "acceptable", "distance": 3.031, "atom1_id": "///A/2560/O2'", "atom2_id": "///A/2687/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4840, "atom1_serNum": 49986, "atom2_serNum": 52492, "donAcc_type": "standard", "distance": 2.291, "atom1_id": "///A/2560/N6", "atom2_id": "///A/2691/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4841, "atom1_serNum": 49987, "atom2_serNum": 52491, "donAcc_type": "standard", "distance": 2.402, "atom1_id": "///A/2560/N1", "atom2_id": "///A/2691/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4842, "atom1_serNum": 49987, "atom2_serNum": 52516, "donAcc_type": "standard", "distance": 3.337, "atom1_id": "///A/2560/N1", "atom2_id": "///A/2692/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4843, "atom1_serNum": 49989, "atom2_serNum": 52396, "donAcc_type": "acceptable", "distance": 2.949, "atom1_id": "///A/2560/N3", "atom2_id": "///A/2687/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4844, "atom1_serNum": 49997, "atom2_serNum": 52382, "donAcc_type": "questionable", "distance": 2.983, "atom1_id": "///A/2561/O4'", "atom2_id": "///A/2686/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4845, "atom1_serNum": 49999, "atom2_serNum": 52552, "donAcc_type": "acceptable", "distance": 2.991, "atom1_id": "///A/2561/O3'", "atom2_id": "///A/2694/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4846, "atom1_serNum": 50001, "atom2_serNum": 52529, "donAcc_type": "acceptable", "distance": 3.069, "atom1_id": "///A/2561/O2'", "atom2_id": "///A/2693/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4847, "atom1_serNum": 50001, "atom2_serNum": 52552, "donAcc_type": "acceptable", "distance": 2.399, "atom1_id": "///A/2561/O2'", "atom2_id": "///A/2694/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4848, "atom1_serNum": 50150, "atom2_serNum": 54184, "donAcc_type": "acceptable", "distance": 2.963, "atom1_id": "///A/2568/O2'", "atom2_id": "///A/2770/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4849, "atom1_serNum": 50166, "atom2_serNum": 54184, "donAcc_type": "acceptable", "distance": 3.445, "atom1_id": "///A/2569/O4'", "atom2_id": "///A/2770/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4850, "atom1_serNum": 50170, "atom2_serNum": 54172, "donAcc_type": "acceptable", "distance": 2.531, "atom1_id": "///A/2569/O2'", "atom2_id": "///A/2769/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4851, "atom1_serNum": 50170, "atom2_serNum": 54180, "donAcc_type": "acceptable", "distance": 3.679, "atom1_id": "///A/2569/O2'", "atom2_id": "///A/2770/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4852, "atom1_serNum": 50188, "atom2_serNum": 54722, "donAcc_type": "acceptable", "distance": 3.480, "atom1_id": "///A/2570/O3'", "atom2_id": "///A/2795/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4853, "atom1_serNum": 50190, "atom2_serNum": 54708, "donAcc_type": "acceptable", "distance": 3.157, "atom1_id": "///A/2570/O2'", "atom2_id": "///A/2794/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4854, "atom1_serNum": 50190, "atom2_serNum": 54718, "donAcc_type": "acceptable", "distance": 3.545, "atom1_id": "///A/2570/O2'", "atom2_id": "///A/2795/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4855, "atom1_serNum": 50200, "atom2_serNum": 54707, "donAcc_type": "standard", "distance": 2.474, "atom1_id": "///A/2570/N3", "atom2_id": "///A/2794/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4856, "atom1_serNum": 50203, "atom2_serNum": 54722, "donAcc_type": "acceptable", "distance": 3.215, "atom1_id": "///A/2571/OP1", "atom2_id": "///A/2795/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4857, "atom1_serNum": 50230, "atom2_serNum": 54713, "donAcc_type": "questionable", "distance": 2.916, "atom1_id": "///A/2572/O4'", "atom2_id": "///A/2795/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4858, "atom1_serNum": 50244, "atom2_serNum": 52157, "donAcc_type": "standard", "distance": 3.394, "atom1_id": "///A/2572/N2", "atom2_id": "///A/2676/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4859, "atom1_serNum": 50257, "atom2_serNum": 52142, "donAcc_type": "acceptable", "distance": 3.363, "atom1_id": "///A/2573/O2'", "atom2_id": "///A/2675/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4860, "atom1_serNum": 50290, "atom2_serNum": 50712, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///A/2574/N2", "atom2_id": "///A/2594/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4861, "atom1_serNum": 50303, "atom2_serNum": 50710, "donAcc_type": "acceptable", "distance": 2.540, "atom1_id": "///A/2575/O2'", "atom2_id": "///A/2594/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4862, "atom1_serNum": 50308, "atom2_serNum": 50750, "donAcc_type": "standard", "distance": 3.590, "atom1_id": "///A/2575/N3", "atom2_id": "///A/2596/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4863, "atom1_serNum": 50323, "atom2_serNum": 50335, "donAcc_type": "acceptable", "distance": 2.984, "atom1_id": "///A/2576/O2'", "atom2_id": "///A/2577/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4864, "atom1_serNum": 50323, "atom2_serNum": 50336, "donAcc_type": "acceptable", "distance": 2.840, "atom1_id": "///A/2576/O2'", "atom2_id": "///A/2577/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4865, "atom1_serNum": 50328, "atom2_serNum": 50626, "donAcc_type": "standard", "distance": 3.295, "atom1_id": "///A/2576/N3", "atom2_id": "///A/2590/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4866, "atom1_serNum": 50330, "atom2_serNum": 50625, "donAcc_type": "standard", "distance": 3.311, "atom1_id": "///A/2576/O4", "atom2_id": "///A/2590/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4867, "atom1_serNum": 50343, "atom2_serNum": 66341, "donAcc_type": "acceptable", "distance": 3.088, "atom1_id": "///A/2577/O2'", "atom2_id": "///H/4/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4868, "atom1_serNum": 50350, "atom2_serNum": 50605, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///A/2577/O6", "atom2_id": "///A/2589/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4869, "atom1_serNum": 50351, "atom2_serNum": 50603, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///A/2577/N1", "atom2_id": "///A/2589/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4870, "atom1_serNum": 50353, "atom2_serNum": 50602, "donAcc_type": "standard", "distance": 2.824, "atom1_id": "///A/2577/N2", "atom2_id": "///A/2589/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4871, "atom1_serNum": 50373, "atom2_serNum": 50585, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///A/2578/O6", "atom2_id": "///A/2588/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4872, "atom1_serNum": 50374, "atom2_serNum": 50583, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///A/2578/N1", "atom2_id": "///A/2588/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4873, "atom1_serNum": 50376, "atom2_serNum": 50582, "donAcc_type": "standard", "distance": 2.819, "atom1_id": "///A/2578/N2", "atom2_id": "///A/2588/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4874, "atom1_serNum": 50396, "atom2_serNum": 50565, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///A/2579/O6", "atom2_id": "///A/2587/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4875, "atom1_serNum": 50397, "atom2_serNum": 50563, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///A/2579/N1", "atom2_id": "///A/2587/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4876, "atom1_serNum": 50399, "atom2_serNum": 50562, "donAcc_type": "standard", "distance": 2.766, "atom1_id": "///A/2579/N2", "atom2_id": "///A/2587/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4877, "atom1_serNum": 50416, "atom2_serNum": 50545, "donAcc_type": "standard", "distance": 2.683, "atom1_id": "///A/2580/O2", "atom2_id": "///A/2586/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4878, "atom1_serNum": 50417, "atom2_serNum": 50543, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///A/2580/N3", "atom2_id": "///A/2586/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4879, "atom1_serNum": 50419, "atom2_serNum": 50542, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///A/2580/N4", "atom2_id": "///A/2586/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4880, "atom1_serNum": 50436, "atom2_serNum": 50522, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///A/2581/O2", "atom2_id": "///A/2585/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4881, "atom1_serNum": 50480, "atom2_serNum": 50502, "donAcc_type": "standard", "distance": 2.966, "atom1_id": "///A/2583/N3", "atom2_id": "///A/2584/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4882, "atom1_serNum": 50487, "atom2_serNum": 50522, "donAcc_type": "standard", "distance": 3.710, "atom1_id": "///A/2584/OP2", "atom2_id": "///A/2585/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4883, "atom1_serNum": 50640, "atom2_serNum": 66480, "donAcc_type": "acceptable", "distance": 2.866, "atom1_id": "///A/2591/O2'", "atom2_id": "///H/23/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4884, "atom1_serNum": 50644, "atom2_serNum": 50731, "donAcc_type": "standard", "distance": 2.656, "atom1_id": "///A/2591/O2", "atom2_id": "///A/2595/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4885, "atom1_serNum": 50644, "atom2_serNum": 66480, "donAcc_type": "standard", "distance": 3.376, "atom1_id": "///A/2591/O2", "atom2_id": "///H/23/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4886, "atom1_serNum": 50645, "atom2_serNum": 50728, "donAcc_type": "standard", "distance": 3.035, "atom1_id": "///A/2591/N3", "atom2_id": "///A/2595/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4887, "atom1_serNum": 50647, "atom2_serNum": 50728, "donAcc_type": "questionable", "distance": 2.506, "atom1_id": "///A/2591/O4", "atom2_id": "///A/2595/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4888, "atom1_serNum": 50660, "atom2_serNum": 50706, "donAcc_type": "acceptable", "distance": 3.940, "atom1_id": "///A/2592/O2'", "atom2_id": "///A/2594/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4889, "atom1_serNum": 50665, "atom2_serNum": 50716, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///A/2592/N3", "atom2_id": "///A/2595/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4890, "atom1_serNum": 50671, "atom2_serNum": 52186, "donAcc_type": "acceptable", "distance": 3.329, "atom1_id": "///A/2593/OP1", "atom2_id": "///A/2677/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4891, "atom1_serNum": 50676, "atom2_serNum": 52177, "donAcc_type": "questionable", "distance": 3.363, "atom1_id": "///A/2593/O4'", "atom2_id": "///A/2677/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4892, "atom1_serNum": 50688, "atom2_serNum": 52146, "donAcc_type": "acceptable", "distance": 3.612, "atom1_id": "///A/2593/N1", "atom2_id": "///A/2675/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4893, "atom1_serNum": 50746, "atom2_serNum": 50762, "donAcc_type": "acceptable", "distance": 2.813, "atom1_id": "///A/2596/O2'", "atom2_id": "///A/2597/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4894, "atom1_serNum": 50769, "atom2_serNum": 50780, "donAcc_type": "acceptable", "distance": 2.885, "atom1_id": "///A/2597/O2'", "atom2_id": "///A/2598/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4895, "atom1_serNum": 50867, "atom2_serNum": 51338, "donAcc_type": "standard", "distance": 3.773, "atom1_id": "///A/2616/OP2", "atom2_id": "///A/2637/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4896, "atom1_serNum": 50882, "atom2_serNum": 51328, "donAcc_type": "acceptable", "distance": 3.347, "atom1_id": "///A/2616/N6", "atom2_id": "///A/2637/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4897, "atom1_serNum": 50904, "atom2_serNum": 51292, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///A/2617/O6", "atom2_id": "///A/2635/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4898, "atom1_serNum": 50905, "atom2_serNum": 51290, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/2617/N1", "atom2_id": "///A/2635/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4899, "atom1_serNum": 50907, "atom2_serNum": 51289, "donAcc_type": "standard", "distance": 2.729, "atom1_id": "///A/2617/N2", "atom2_id": "///A/2635/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4900, "atom1_serNum": 50920, "atom2_serNum": 50935, "donAcc_type": "acceptable", "distance": 3.070, "atom1_id": "///A/2618/O2'", "atom2_id": "///A/2619/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4901, "atom1_serNum": 50927, "atom2_serNum": 51272, "donAcc_type": "standard", "distance": 3.084, "atom1_id": "///A/2618/N6", "atom2_id": "///A/2634/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4902, "atom1_serNum": 50928, "atom2_serNum": 51270, "donAcc_type": "standard", "distance": 2.837, "atom1_id": "///A/2618/N1", "atom2_id": "///A/2634/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4903, "atom1_serNum": 50949, "atom2_serNum": 51252, "donAcc_type": "standard", "distance": 3.043, "atom1_id": "///A/2619/N6", "atom2_id": "///A/2633/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4904, "atom1_serNum": 50950, "atom2_serNum": 51250, "donAcc_type": "standard", "distance": 2.837, "atom1_id": "///A/2619/N1", "atom2_id": "///A/2633/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4905, "atom1_serNum": 50968, "atom2_serNum": 51232, "donAcc_type": "standard", "distance": 2.736, "atom1_id": "///A/2620/O2", "atom2_id": "///A/2632/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4906, "atom1_serNum": 50969, "atom2_serNum": 51230, "donAcc_type": "standard", "distance": 3.331, "atom1_id": "///A/2620/N3", "atom2_id": "///A/2632/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4907, "atom1_serNum": 50971, "atom2_serNum": 51229, "donAcc_type": "standard", "distance": 3.780, "atom1_id": "///A/2620/N4", "atom2_id": "///A/2632/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4908, "atom1_serNum": 50991, "atom2_serNum": 51187, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///A/2621/O6", "atom2_id": "///A/2630/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4909, "atom1_serNum": 50992, "atom2_serNum": 51185, "donAcc_type": "standard", "distance": 2.844, "atom1_id": "///A/2621/N1", "atom2_id": "///A/2630/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4910, "atom1_serNum": 50994, "atom2_serNum": 51184, "donAcc_type": "standard", "distance": 2.714, "atom1_id": "///A/2621/N2", "atom2_id": "///A/2630/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4911, "atom1_serNum": 51012, "atom2_serNum": 51166, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///A/2622/N3", "atom2_id": "///A/2629/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4912, "atom1_serNum": 51014, "atom2_serNum": 51165, "donAcc_type": "standard", "distance": 3.049, "atom1_id": "///A/2622/O4", "atom2_id": "///A/2629/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4913, "atom1_serNum": 51031, "atom2_serNum": 51145, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///A/2623/O2", "atom2_id": "///A/2628/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4914, "atom1_serNum": 51031, "atom2_serNum": 79450, "donAcc_type": "acceptable", "distance": 3.477, "atom1_id": "///A/2623/O2", "atom2_id": "///W/408/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 4915, "atom1_serNum": 51032, "atom2_serNum": 51143, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/2623/N3", "atom2_id": "///A/2628/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4916, "atom1_serNum": 51034, "atom2_serNum": 51142, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///A/2623/N4", "atom2_id": "///A/2628/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4917, "atom1_serNum": 51038, "atom2_serNum": 79518, "donAcc_type": "standard", "distance": 3.593, "atom1_id": "///A/2624/OP1", "atom2_id": "///W/415/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4918, "atom1_serNum": 51047, "atom2_serNum": 79450, "donAcc_type": "acceptable", "distance": 2.532, "atom1_id": "///A/2624/O2'", "atom2_id": "///W/408/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 4919, "atom1_serNum": 51057, "atom2_serNum": 51105, "donAcc_type": "standard", "distance": 2.553, "atom1_id": "///A/2624/N2", "atom2_id": "///A/2627/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4920, "atom1_serNum": 51062, "atom2_serNum": 79518, "donAcc_type": "standard", "distance": 3.019, "atom1_id": "///A/2625/OP2", "atom2_id": "///W/415/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4921, "atom1_serNum": 51070, "atom2_serNum": 51081, "donAcc_type": "acceptable", "distance": 2.334, "atom1_id": "///A/2625/O2'", "atom2_id": "///A/2626/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4922, "atom1_serNum": 51090, "atom2_serNum": 51109, "donAcc_type": "acceptable", "distance": 2.249, "atom1_id": "///A/2626/O2'", "atom2_id": "///A/2627/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4923, "atom1_serNum": 51094, "atom2_serNum": 79481, "donAcc_type": "standard", "distance": 3.026, "atom1_id": "///A/2626/N7", "atom2_id": "///W/411/NH1", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 4924, "atom1_serNum": 51135, "atom2_serNum": 79433, "donAcc_type": "acceptable", "distance": 3.665, "atom1_id": "///A/2628/O2'", "atom2_id": "///W/406/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4925, "atom1_serNum": 51145, "atom2_serNum": 79450, "donAcc_type": "acceptable", "distance": 3.110, "atom1_id": "///A/2628/N2", "atom2_id": "///W/408/OG", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 4926, "atom1_serNum": 51154, "atom2_serNum": 79433, "donAcc_type": "standard", "distance": 3.008, "atom1_id": "///A/2629/O4'", "atom2_id": "///W/406/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4927, "atom1_serNum": 51180, "atom2_serNum": 51215, "donAcc_type": "acceptable", "distance": 2.854, "atom1_id": "///A/2630/O2'", "atom2_id": "///A/2632/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4928, "atom1_serNum": 51213, "atom2_serNum": 79216, "donAcc_type": "standard", "distance": 3.609, "atom1_id": "///A/2632/OP1", "atom2_id": "///W/379/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4929, "atom1_serNum": 51305, "atom2_serNum": 51321, "donAcc_type": "acceptable", "distance": 2.928, "atom1_id": "///A/2636/O2'", "atom2_id": "///A/2637/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4930, "atom1_serNum": 51391, "atom2_serNum": 51407, "donAcc_type": "acceptable", "distance": 3.031, "atom1_id": "///A/2640/O2'", "atom2_id": "///A/2641/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4931, "atom1_serNum": 51461, "atom2_serNum": 51480, "donAcc_type": "questionable", "distance": 3.019, "atom1_id": "///A/2643/N3", "atom2_id": "///A/2644/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4932, "atom1_serNum": 51533, "atom2_serNum": 51549, "donAcc_type": "acceptable", "distance": 3.064, "atom1_id": "///A/2647/O2'", "atom2_id": "///A/2648/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4933, "atom1_serNum": 51596, "atom2_serNum": 62886, "donAcc_type": "acceptable", "distance": 3.615, "atom1_id": "///A/2650/O2'", "atom2_id": "///D/163/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4934, "atom1_serNum": 51619, "atom2_serNum": 55876, "donAcc_type": "acceptable", "distance": 3.937, "atom1_id": "///A/2651/O2'", "atom2_id": "///A/2849/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4935, "atom1_serNum": 51619, "atom2_serNum": 55893, "donAcc_type": "acceptable", "distance": 3.303, "atom1_id": "///A/2651/O2'", "atom2_id": "///A/2850/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4936, "atom1_serNum": 51630, "atom2_serNum": 55912, "donAcc_type": "acceptable", "distance": 2.652, "atom1_id": "///A/2652/OP1", "atom2_id": "///A/2851/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4937, "atom1_serNum": 51639, "atom2_serNum": 55889, "donAcc_type": "acceptable", "distance": 3.510, "atom1_id": "///A/2652/O2'", "atom2_id": "///A/2850/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4938, "atom1_serNum": 51712, "atom2_serNum": 54959, "donAcc_type": "standard", "distance": 2.759, "atom1_id": "///A/2655/O2", "atom2_id": "///A/2806/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4939, "atom1_serNum": 51713, "atom2_serNum": 54957, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/2655/N3", "atom2_id": "///A/2806/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4940, "atom1_serNum": 51715, "atom2_serNum": 54956, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///A/2655/N4", "atom2_id": "///A/2806/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4941, "atom1_serNum": 51728, "atom2_serNum": 55045, "donAcc_type": "acceptable", "distance": 2.648, "atom1_id": "///A/2656/O2'", "atom2_id": "///A/2810/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4942, "atom1_serNum": 51738, "atom2_serNum": 54941, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///A/2656/N2", "atom2_id": "///A/2806/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4943, "atom1_serNum": 51738, "atom2_serNum": 55047, "donAcc_type": "standard", "distance": 3.379, "atom1_id": "///A/2656/N2", "atom2_id": "///A/2810/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4944, "atom1_serNum": 51751, "atom2_serNum": 51763, "donAcc_type": "acceptable", "distance": 3.100, "atom1_id": "///A/2657/O2'", "atom2_id": "///A/2658/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4945, "atom1_serNum": 51751, "atom2_serNum": 55050, "donAcc_type": "acceptable", "distance": 2.966, "atom1_id": "///A/2657/O2'", "atom2_id": "///A/2811/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4946, "atom1_serNum": 51793, "atom2_serNum": 57314, "donAcc_type": "acceptable", "distance": 3.292, "atom1_id": "///A/2659/O2'", "atom2_id": "///A/2916/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4947, "atom1_serNum": 51800, "atom2_serNum": 55191, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///A/2659/O6", "atom2_id": "///A/2817/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4948, "atom1_serNum": 51801, "atom2_serNum": 55189, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///A/2659/N1", "atom2_id": "///A/2817/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4949, "atom1_serNum": 51803, "atom2_serNum": 55188, "donAcc_type": "standard", "distance": 2.762, "atom1_id": "///A/2659/N2", "atom2_id": "///A/2817/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4950, "atom1_serNum": 51816, "atom2_serNum": 55553, "donAcc_type": "acceptable", "distance": 3.764, "atom1_id": "///A/2660/O2'", "atom2_id": "///A/2834/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4951, "atom1_serNum": 51816, "atom2_serNum": 55576, "donAcc_type": "acceptable", "distance": 3.310, "atom1_id": "///A/2660/O2'", "atom2_id": "///A/2835/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4952, "atom1_serNum": 51823, "atom2_serNum": 55171, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///A/2660/O6", "atom2_id": "///A/2816/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4953, "atom1_serNum": 51824, "atom2_serNum": 55169, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///A/2660/N1", "atom2_id": "///A/2816/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4954, "atom1_serNum": 51826, "atom2_serNum": 55168, "donAcc_type": "standard", "distance": 2.794, "atom1_id": "///A/2660/N2", "atom2_id": "///A/2816/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4955, "atom1_serNum": 51826, "atom2_serNum": 55578, "donAcc_type": "standard", "distance": 3.615, "atom1_id": "///A/2660/N2", "atom2_id": "///A/2835/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4956, "atom1_serNum": 51846, "atom2_serNum": 55151, "donAcc_type": "standard", "distance": 3.018, "atom1_id": "///A/2661/N6", "atom2_id": "///A/2815/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4957, "atom1_serNum": 51847, "atom2_serNum": 55149, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///A/2661/N1", "atom2_id": "///A/2815/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4958, "atom1_serNum": 51861, "atom2_serNum": 62353, "donAcc_type": "acceptable", "distance": 3.082, "atom1_id": "///A/2662/O2'", "atom2_id": "///D/65/OE2", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 4959, "atom1_serNum": 51868, "atom2_serNum": 55131, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///A/2662/N6", "atom2_id": "///A/2814/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4960, "atom1_serNum": 51869, "atom2_serNum": 55129, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///A/2662/N1", "atom2_id": "///A/2814/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4961, "atom1_serNum": 51890, "atom2_serNum": 55111, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/2663/N6", "atom2_id": "///A/2813/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4962, "atom1_serNum": 51891, "atom2_serNum": 55109, "donAcc_type": "standard", "distance": 2.964, "atom1_id": "///A/2663/N1", "atom2_id": "///A/2813/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4963, "atom1_serNum": 51905, "atom2_serNum": 62145, "donAcc_type": "acceptable", "distance": 3.476, "atom1_id": "///A/2664/O2'", "atom2_id": "///D/39/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4964, "atom1_serNum": 51905, "atom2_serNum": 62228, "donAcc_type": "acceptable", "distance": 2.339, "atom1_id": "///A/2664/O2'", "atom2_id": "///D/50/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 4965, "atom1_serNum": 51910, "atom2_serNum": 55090, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///A/2664/N3", "atom2_id": "///A/2812/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4966, "atom1_serNum": 51912, "atom2_serNum": 55089, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///A/2664/O4", "atom2_id": "///A/2812/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4967, "atom1_serNum": 51916, "atom2_serNum": 62468, "donAcc_type": "standard", "distance": 3.094, "atom1_id": "///A/2665/OP1", "atom2_id": "///D/82/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4968, "atom1_serNum": 51925, "atom2_serNum": 51941, "donAcc_type": "acceptable", "distance": 3.414, "atom1_id": "///A/2665/O2'", "atom2_id": "///A/2666/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4969, "atom1_serNum": 51925, "atom2_serNum": 62198, "donAcc_type": "acceptable", "distance": 2.384, "atom1_id": "///A/2665/O2'", "atom2_id": "///D/46/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 4970, "atom1_serNum": 51929, "atom2_serNum": 55067, "donAcc_type": "standard", "distance": 2.938, "atom1_id": "///A/2665/O2", "atom2_id": "///A/2811/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4971, "atom1_serNum": 51930, "atom2_serNum": 55066, "donAcc_type": "standard", "distance": 2.733, "atom1_id": "///A/2665/N3", "atom2_id": "///A/2811/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4972, "atom1_serNum": 51949, "atom2_serNum": 54934, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///A/2666/O2", "atom2_id": "///A/2805/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4973, "atom1_serNum": 51950, "atom2_serNum": 54931, "donAcc_type": "standard", "distance": 2.946, "atom1_id": "///A/2666/N3", "atom2_id": "///A/2805/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4974, "atom1_serNum": 51965, "atom2_serNum": 51980, "donAcc_type": "acceptable", "distance": 2.822, "atom1_id": "///A/2667/O2'", "atom2_id": "///A/2668/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4975, "atom1_serNum": 51965, "atom2_serNum": 51992, "donAcc_type": "acceptable", "distance": 3.106, "atom1_id": "///A/2667/O2'", "atom2_id": "///A/2668/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4976, "atom1_serNum": 51965, "atom2_serNum": 54913, "donAcc_type": "acceptable", "distance": 3.131, "atom1_id": "///A/2667/O2'", "atom2_id": "///A/2804/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4977, "atom1_serNum": 51973, "atom2_serNum": 54919, "donAcc_type": "standard", "distance": 2.548, "atom1_id": "///A/2667/N1", "atom2_id": "///A/2805/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4978, "atom1_serNum": 51975, "atom2_serNum": 54976, "donAcc_type": "standard", "distance": 2.966, "atom1_id": "///A/2667/N2", "atom2_id": "///A/2807/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4979, "atom1_serNum": 51976, "atom2_serNum": 54979, "donAcc_type": "standard", "distance": 3.062, "atom1_id": "///A/2667/N3", "atom2_id": "///A/2807/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4980, "atom1_serNum": 51980, "atom2_serNum": 52014, "donAcc_type": "questionable", "distance": 3.207, "atom1_id": "///A/2668/OP2", "atom2_id": "///A/2669/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4981, "atom1_serNum": 51986, "atom2_serNum": 65960, "donAcc_type": "standard", "distance": 2.762, "atom1_id": "///A/2668/O3'", "atom2_id": "///G/100/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4982, "atom1_serNum": 51995, "atom2_serNum": 54905, "donAcc_type": "acceptable", "distance": 3.344, "atom1_id": "///A/2668/N6", "atom2_id": "///A/2804/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4983, "atom1_serNum": 51995, "atom2_serNum": 54915, "donAcc_type": "standard", "distance": 3.202, "atom1_id": "///A/2668/N6", "atom2_id": "///A/2804/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4984, "atom1_serNum": 52001, "atom2_serNum": 65784, "donAcc_type": "standard", "distance": 3.335, "atom1_id": "///A/2669/OP1", "atom2_id": "///G/77/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 4985, "atom1_serNum": 52017, "atom2_serNum": 54892, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///A/2669/O6", "atom2_id": "///A/2803/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4986, "atom1_serNum": 52018, "atom2_serNum": 54890, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///A/2669/N1", "atom2_id": "///A/2803/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4987, "atom1_serNum": 52020, "atom2_serNum": 54889, "donAcc_type": "standard", "distance": 2.750, "atom1_id": "///A/2669/N2", "atom2_id": "///A/2803/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4988, "atom1_serNum": 52040, "atom2_serNum": 54872, "donAcc_type": "standard", "distance": 2.993, "atom1_id": "///A/2670/N6", "atom2_id": "///A/2802/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4989, "atom1_serNum": 52041, "atom2_serNum": 54870, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///A/2670/N1", "atom2_id": "///A/2802/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4990, "atom1_serNum": 52062, "atom2_serNum": 54852, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///A/2671/O6", "atom2_id": "///A/2801/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4991, "atom1_serNum": 52063, "atom2_serNum": 54850, "donAcc_type": "standard", "distance": 2.855, "atom1_id": "///A/2671/N1", "atom2_id": "///A/2801/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4992, "atom1_serNum": 52065, "atom2_serNum": 54849, "donAcc_type": "standard", "distance": 2.693, "atom1_id": "///A/2671/N2", "atom2_id": "///A/2801/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4993, "atom1_serNum": 52085, "atom2_serNum": 54832, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///A/2672/O6", "atom2_id": "///A/2800/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4994, "atom1_serNum": 52086, "atom2_serNum": 54830, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///A/2672/N1", "atom2_id": "///A/2800/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 4995, "atom1_serNum": 52088, "atom2_serNum": 54829, "donAcc_type": "standard", "distance": 2.712, "atom1_id": "///A/2672/N2", "atom2_id": "///A/2800/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 4996, "atom1_serNum": 52101, "atom2_serNum": 53986, "donAcc_type": "acceptable", "distance": 3.583, "atom1_id": "///A/2673/O2'", "atom2_id": "///A/2761/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 4997, "atom1_serNum": 52114, "atom2_serNum": 53996, "donAcc_type": "standard", "distance": 3.792, "atom1_id": "///A/2674/OP1", "atom2_id": "///A/2761/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4998, "atom1_serNum": 52150, "atom2_serNum": 52758, "donAcc_type": "standard", "distance": 2.735, "atom1_id": "///A/2675/O2", "atom2_id": "///A/2703/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 4999, "atom1_serNum": 52151, "atom2_serNum": 52756, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///A/2675/N3", "atom2_id": "///A/2703/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5000, "atom1_serNum": 52153, "atom2_serNum": 52755, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///A/2675/N4", "atom2_id": "///A/2703/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5001, "atom1_serNum": 52170, "atom2_serNum": 52735, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///A/2676/O2", "atom2_id": "///A/2702/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5002, "atom1_serNum": 52171, "atom2_serNum": 52732, "donAcc_type": "standard", "distance": 2.564, "atom1_id": "///A/2676/N3", "atom2_id": "///A/2702/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5003, "atom1_serNum": 52173, "atom2_serNum": 52732, "donAcc_type": "questionable", "distance": 2.229, "atom1_id": "///A/2676/O4", "atom2_id": "///A/2702/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5004, "atom1_serNum": 52193, "atom2_serNum": 52710, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///A/2677/O6", "atom2_id": "///A/2701/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5005, "atom1_serNum": 52194, "atom2_serNum": 52709, "donAcc_type": "standard", "distance": 3.048, "atom1_id": "///A/2677/N1", "atom2_id": "///A/2701/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5006, "atom1_serNum": 52196, "atom2_serNum": 52709, "donAcc_type": "standard", "distance": 3.336, "atom1_id": "///A/2677/N2", "atom2_id": "///A/2701/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5007, "atom1_serNum": 52214, "atom2_serNum": 52691, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///A/2678/N3", "atom2_id": "///A/2700/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5008, "atom1_serNum": 52216, "atom2_serNum": 52690, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///A/2678/O4", "atom2_id": "///A/2700/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5009, "atom1_serNum": 52233, "atom2_serNum": 52670, "donAcc_type": "standard", "distance": 2.612, "atom1_id": "///A/2679/O2", "atom2_id": "///A/2699/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5010, "atom1_serNum": 52234, "atom2_serNum": 52668, "donAcc_type": "standard", "distance": 2.820, "atom1_id": "///A/2679/N3", "atom2_id": "///A/2699/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5011, "atom1_serNum": 52236, "atom2_serNum": 52667, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///A/2679/N4", "atom2_id": "///A/2699/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5012, "atom1_serNum": 52249, "atom2_serNum": 52262, "donAcc_type": "acceptable", "distance": 2.710, "atom1_id": "///A/2680/O2'", "atom2_id": "///A/2681/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5013, "atom1_serNum": 52253, "atom2_serNum": 52647, "donAcc_type": "standard", "distance": 2.790, "atom1_id": "///A/2680/O2", "atom2_id": "///A/2698/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5014, "atom1_serNum": 52254, "atom2_serNum": 52645, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///A/2680/N3", "atom2_id": "///A/2698/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5015, "atom1_serNum": 52256, "atom2_serNum": 52644, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///A/2680/N4", "atom2_id": "///A/2698/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5016, "atom1_serNum": 52273, "atom2_serNum": 52624, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///A/2681/O2", "atom2_id": "///A/2697/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5017, "atom1_serNum": 52274, "atom2_serNum": 52622, "donAcc_type": "questionable", "distance": 2.612, "atom1_id": "///A/2681/N3", "atom2_id": "///A/2697/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5018, "atom1_serNum": 52276, "atom2_serNum": 52621, "donAcc_type": "questionable", "distance": 2.103, "atom1_id": "///A/2681/O4", "atom2_id": "///A/2697/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5019, "atom1_serNum": 52281, "atom2_serNum": 52309, "donAcc_type": "acceptable", "distance": 3.260, "atom1_id": "///A/2682/OP2", "atom2_id": "///A/2683/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5020, "atom1_serNum": 52281, "atom2_serNum": 52323, "donAcc_type": "questionable", "distance": 3.202, "atom1_id": "///A/2682/OP2", "atom2_id": "///A/2684/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5021, "atom1_serNum": 52305, "atom2_serNum": 52350, "donAcc_type": "questionable", "distance": 3.122, "atom1_id": "///A/2683/O4'", "atom2_id": "///A/2685/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5022, "atom1_serNum": 52316, "atom2_serNum": 52601, "donAcc_type": "questionable", "distance": 2.954, "atom1_id": "///A/2683/N6", "atom2_id": "///A/2696/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5023, "atom1_serNum": 52331, "atom2_serNum": 52536, "donAcc_type": "acceptable", "distance": 2.767, "atom1_id": "///A/2684/O2'", "atom2_id": "///A/2693/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5024, "atom1_serNum": 52331, "atom2_serNum": 52537, "donAcc_type": "acceptable", "distance": 2.938, "atom1_id": "///A/2684/O2'", "atom2_id": "///A/2693/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5025, "atom1_serNum": 52338, "atom2_serNum": 52521, "donAcc_type": "questionable", "distance": 3.057, "atom1_id": "///A/2684/O6", "atom2_id": "///A/2693/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5026, "atom1_serNum": 52339, "atom2_serNum": 52544, "donAcc_type": "standard", "distance": 2.587, "atom1_id": "///A/2684/N1", "atom2_id": "///A/2694/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5027, "atom1_serNum": 52341, "atom2_serNum": 52361, "donAcc_type": "standard", "distance": 2.390, "atom1_id": "///A/2684/N2", "atom2_id": "///A/2685/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5028, "atom1_serNum": 52341, "atom2_serNum": 52545, "donAcc_type": "standard", "distance": 2.595, "atom1_id": "///A/2684/N2", "atom2_id": "///A/2694/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5029, "atom1_serNum": 52341, "atom2_serNum": 52548, "donAcc_type": "standard", "distance": 3.161, "atom1_id": "///A/2684/N2", "atom2_id": "///A/2694/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5030, "atom1_serNum": 52359, "atom2_serNum": 52556, "donAcc_type": "standard", "distance": 2.565, "atom1_id": "///A/2685/N3", "atom2_id": "///A/2694/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5031, "atom1_serNum": 52366, "atom2_serNum": 52403, "donAcc_type": "standard", "distance": 3.757, "atom1_id": "///A/2686/OP2", "atom2_id": "///A/2687/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5032, "atom1_serNum": 52378, "atom2_serNum": 52539, "donAcc_type": "standard", "distance": 2.586, "atom1_id": "///A/2686/N7", "atom2_id": "///A/2693/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5033, "atom1_serNum": 52381, "atom2_serNum": 52529, "donAcc_type": "acceptable", "distance": 2.895, "atom1_id": "///A/2686/N6", "atom2_id": "///A/2693/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5034, "atom1_serNum": 52381, "atom2_serNum": 52540, "donAcc_type": "standard", "distance": 2.620, "atom1_id": "///A/2686/N6", "atom2_id": "///A/2693/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5035, "atom1_serNum": 52400, "atom2_serNum": 52516, "donAcc_type": "standard", "distance": 2.615, "atom1_id": "///A/2687/O2", "atom2_id": "///A/2692/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5036, "atom1_serNum": 52401, "atom2_serNum": 52514, "donAcc_type": "standard", "distance": 2.841, "atom1_id": "///A/2687/N3", "atom2_id": "///A/2692/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5037, "atom1_serNum": 52403, "atom2_serNum": 52513, "donAcc_type": "standard", "distance": 2.990, "atom1_id": "///A/2687/N4", "atom2_id": "///A/2692/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5038, "atom1_serNum": 52416, "atom2_serNum": 52465, "donAcc_type": "acceptable", "distance": 2.862, "atom1_id": "///A/2688/O2'", "atom2_id": "///A/2690/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5039, "atom1_serNum": 52416, "atom2_serNum": 52468, "donAcc_type": "acceptable", "distance": 3.325, "atom1_id": "///A/2688/O2'", "atom2_id": "///A/2690/O6", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5040, "atom1_serNum": 52426, "atom2_serNum": 52476, "donAcc_type": "standard", "distance": 2.346, "atom1_id": "///A/2688/N2", "atom2_id": "///A/2691/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5041, "atom1_serNum": 52426, "atom2_serNum": 52488, "donAcc_type": "standard", "distance": 2.411, "atom1_id": "///A/2688/N2", "atom2_id": "///A/2691/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5042, "atom1_serNum": 52427, "atom2_serNum": 52491, "donAcc_type": "standard", "distance": 3.195, "atom1_id": "///A/2688/N3", "atom2_id": "///A/2691/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5043, "atom1_serNum": 52529, "atom2_serNum": 52548, "donAcc_type": "acceptable", "distance": 3.050, "atom1_id": "///A/2693/O2'", "atom2_id": "///A/2694/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5044, "atom1_serNum": 52566, "atom2_serNum": 52601, "donAcc_type": "standard", "distance": 2.532, "atom1_id": "///A/2695/OP2", "atom2_id": "///A/2696/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5045, "atom1_serNum": 52574, "atom2_serNum": 52585, "donAcc_type": "acceptable", "distance": 2.443, "atom1_id": "///A/2695/O2'", "atom2_id": "///A/2696/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5046, "atom1_serNum": 52614, "atom2_serNum": 52630, "donAcc_type": "acceptable", "distance": 2.907, "atom1_id": "///A/2697/O2'", "atom2_id": "///A/2698/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5047, "atom1_serNum": 52660, "atom2_serNum": 52676, "donAcc_type": "acceptable", "distance": 2.603, "atom1_id": "///A/2699/O2'", "atom2_id": "///A/2700/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5048, "atom1_serNum": 52660, "atom2_serNum": 52679, "donAcc_type": "acceptable", "distance": 2.612, "atom1_id": "///A/2699/O2'", "atom2_id": "///A/2700/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5049, "atom1_serNum": 52748, "atom2_serNum": 66504, "donAcc_type": "acceptable", "distance": 3.830, "atom1_id": "///A/2703/O2'", "atom2_id": "///H/28/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5050, "atom1_serNum": 52778, "atom2_serNum": 53993, "donAcc_type": "standard", "distance": 2.861, "atom1_id": "///A/2704/N6", "atom2_id": "///A/2761/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5051, "atom1_serNum": 52779, "atom2_serNum": 53994, "donAcc_type": "standard", "distance": 3.043, "atom1_id": "///A/2704/N1", "atom2_id": "///A/2761/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5052, "atom1_serNum": 52797, "atom2_serNum": 53973, "donAcc_type": "standard", "distance": 2.788, "atom1_id": "///A/2705/O2", "atom2_id": "///A/2760/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5053, "atom1_serNum": 52798, "atom2_serNum": 53971, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///A/2705/N3", "atom2_id": "///A/2760/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5054, "atom1_serNum": 52800, "atom2_serNum": 53970, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///A/2705/N4", "atom2_id": "///A/2760/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5055, "atom1_serNum": 52813, "atom2_serNum": 52832, "donAcc_type": "acceptable", "distance": 3.207, "atom1_id": "///A/2706/O2'", "atom2_id": "///A/2707/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5056, "atom1_serNum": 52820, "atom2_serNum": 53950, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/2706/O6", "atom2_id": "///A/2759/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5057, "atom1_serNum": 52821, "atom2_serNum": 53948, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///A/2706/N1", "atom2_id": "///A/2759/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5058, "atom1_serNum": 52823, "atom2_serNum": 53947, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///A/2706/N2", "atom2_id": "///A/2759/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5059, "atom1_serNum": 52840, "atom2_serNum": 53930, "donAcc_type": "standard", "distance": 2.831, "atom1_id": "///A/2707/O2", "atom2_id": "///A/2758/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5060, "atom1_serNum": 52841, "atom2_serNum": 53928, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///A/2707/N3", "atom2_id": "///A/2758/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5061, "atom1_serNum": 52843, "atom2_serNum": 53927, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///A/2707/N4", "atom2_id": "///A/2758/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5062, "atom1_serNum": 52863, "atom2_serNum": 53907, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///A/2708/N6", "atom2_id": "///A/2757/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5063, "atom1_serNum": 52864, "atom2_serNum": 53905, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/2708/N1", "atom2_id": "///A/2757/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5064, "atom1_serNum": 52869, "atom2_serNum": 62706, "donAcc_type": "standard", "distance": 3.156, "atom1_id": "///A/2709/OP1", "atom2_id": "///D/115/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5065, "atom1_serNum": 52869, "atom2_serNum": 63119, "donAcc_type": "standard", "distance": 3.497, "atom1_id": "///A/2709/OP1", "atom2_id": "///D/194/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5066, "atom1_serNum": 52878, "atom2_serNum": 52891, "donAcc_type": "acceptable", "distance": 2.509, "atom1_id": "///A/2709/O2'", "atom2_id": "///A/2710/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5067, "atom1_serNum": 52878, "atom2_serNum": 52894, "donAcc_type": "acceptable", "distance": 3.022, "atom1_id": "///A/2709/O2'", "atom2_id": "///A/2710/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5068, "atom1_serNum": 52882, "atom2_serNum": 53887, "donAcc_type": "standard", "distance": 2.844, "atom1_id": "///A/2709/O2", "atom2_id": "///A/2756/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5069, "atom1_serNum": 52883, "atom2_serNum": 53885, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///A/2709/N3", "atom2_id": "///A/2756/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5070, "atom1_serNum": 52885, "atom2_serNum": 53884, "donAcc_type": "standard", "distance": 2.976, "atom1_id": "///A/2709/N4", "atom2_id": "///A/2756/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5071, "atom1_serNum": 52890, "atom2_serNum": 62714, "donAcc_type": "standard", "distance": 3.466, "atom1_id": "///A/2710/OP2", "atom2_id": "///D/115/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5072, "atom1_serNum": 52898, "atom2_serNum": 52902, "donAcc_type": "acceptable", "distance": 3.005, "atom1_id": "///A/2710/O2'", "atom2_id": "///A/2710/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5073, "atom1_serNum": 52902, "atom2_serNum": 52948, "donAcc_type": "standard", "distance": 3.436, "atom1_id": "///A/2710/O2", "atom2_id": "///A/2712/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5074, "atom1_serNum": 52903, "atom2_serNum": 53842, "donAcc_type": "standard", "distance": 3.347, "atom1_id": "///A/2710/N3", "atom2_id": "///A/2754/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5075, "atom1_serNum": 52905, "atom2_serNum": 53839, "donAcc_type": "standard", "distance": 3.244, "atom1_id": "///A/2710/N4", "atom2_id": "///A/2754/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5076, "atom1_serNum": 52918, "atom2_serNum": 69411, "donAcc_type": "acceptable", "distance": 3.602, "atom1_id": "///A/2711/O2'", "atom2_id": "///K/59/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5077, "atom1_serNum": 52925, "atom2_serNum": 53887, "donAcc_type": "standard", "distance": 3.266, "atom1_id": "///A/2711/O6", "atom2_id": "///A/2756/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5078, "atom1_serNum": 52926, "atom2_serNum": 53900, "donAcc_type": "acceptable", "distance": 3.757, "atom1_id": "///A/2711/N1", "atom2_id": "///A/2757/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5079, "atom1_serNum": 52932, "atom2_serNum": 69385, "donAcc_type": "standard", "distance": 2.787, "atom1_id": "///A/2712/OP1", "atom2_id": "///K/54/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5080, "atom1_serNum": 52941, "atom2_serNum": 66840, "donAcc_type": "acceptable", "distance": 3.698, "atom1_id": "///A/2712/O2'", "atom2_id": "///H/76/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5081, "atom1_serNum": 52945, "atom2_serNum": 66795, "donAcc_type": "standard", "distance": 3.228, "atom1_id": "///A/2712/O2", "atom2_id": "///H/70/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5082, "atom1_serNum": 52945, "atom2_serNum": 66796, "donAcc_type": "standard", "distance": 3.295, "atom1_id": "///A/2712/O2", "atom2_id": "///H/70/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5083, "atom1_serNum": 52946, "atom2_serNum": 53877, "donAcc_type": "acceptable", "distance": 3.103, "atom1_id": "///A/2712/N3", "atom2_id": "///A/2756/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5084, "atom1_serNum": 52948, "atom2_serNum": 53888, "donAcc_type": "standard", "distance": 3.208, "atom1_id": "///A/2712/N4", "atom2_id": "///A/2756/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5085, "atom1_serNum": 52952, "atom2_serNum": 69426, "donAcc_type": "acceptable", "distance": 3.561, "atom1_id": "///A/2713/OP1", "atom2_id": "///K/61/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5086, "atom1_serNum": 52966, "atom2_serNum": 53843, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///A/2713/N3", "atom2_id": "///A/2754/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5087, "atom1_serNum": 52968, "atom2_serNum": 53842, "donAcc_type": "standard", "distance": 3.007, "atom1_id": "///A/2713/O4", "atom2_id": "///A/2754/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5088, "atom1_serNum": 52988, "atom2_serNum": 53820, "donAcc_type": "standard", "distance": 2.784, "atom1_id": "///A/2714/O6", "atom2_id": "///A/2753/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5089, "atom1_serNum": 52989, "atom2_serNum": 53819, "donAcc_type": "standard", "distance": 3.115, "atom1_id": "///A/2714/N1", "atom2_id": "///A/2753/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5090, "atom1_serNum": 53011, "atom2_serNum": 53802, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///A/2715/O6", "atom2_id": "///A/2752/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5091, "atom1_serNum": 53012, "atom2_serNum": 53800, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///A/2715/N1", "atom2_id": "///A/2752/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5092, "atom1_serNum": 53014, "atom2_serNum": 53799, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///A/2715/N2", "atom2_id": "///A/2752/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5093, "atom1_serNum": 53027, "atom2_serNum": 53038, "donAcc_type": "acceptable", "distance": 2.356, "atom1_id": "///A/2716/O2'", "atom2_id": "///A/2717/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5094, "atom1_serNum": 53027, "atom2_serNum": 53040, "donAcc_type": "acceptable", "distance": 2.782, "atom1_id": "///A/2716/O2'", "atom2_id": "///A/2717/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5095, "atom1_serNum": 53031, "atom2_serNum": 53780, "donAcc_type": "standard", "distance": 3.126, "atom1_id": "///A/2716/O2", "atom2_id": "///A/2751/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5096, "atom1_serNum": 53032, "atom2_serNum": 53779, "donAcc_type": "standard", "distance": 2.865, "atom1_id": "///A/2716/N3", "atom2_id": "///A/2751/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5097, "atom1_serNum": 53039, "atom2_serNum": 53585, "donAcc_type": "standard", "distance": 3.740, "atom1_id": "///A/2717/OP2", "atom2_id": "///A/2742/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5098, "atom1_serNum": 53047, "atom2_serNum": 53757, "donAcc_type": "acceptable", "distance": 3.157, "atom1_id": "///A/2717/O2'", "atom2_id": "///A/2750/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5099, "atom1_serNum": 53055, "atom2_serNum": 53722, "donAcc_type": "standard", "distance": 2.135, "atom1_id": "///A/2717/N1", "atom2_id": "///A/2749/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5100, "atom1_serNum": 53057, "atom2_serNum": 53722, "donAcc_type": "standard", "distance": 3.097, "atom1_id": "///A/2717/N2", "atom2_id": "///A/2749/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5101, "atom1_serNum": 53057, "atom2_serNum": 53754, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///A/2717/N2", "atom2_id": "///A/2750/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5102, "atom1_serNum": 53058, "atom2_serNum": 53757, "donAcc_type": "standard", "distance": 3.039, "atom1_id": "///A/2717/N3", "atom2_id": "///A/2750/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5103, "atom1_serNum": 53061, "atom2_serNum": 53715, "donAcc_type": "standard", "distance": 2.460, "atom1_id": "///A/2718/OP1", "atom2_id": "///A/2748/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5104, "atom1_serNum": 53062, "atom2_serNum": 53717, "donAcc_type": "standard", "distance": 3.182, "atom1_id": "///A/2718/OP2", "atom2_id": "///A/2748/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5105, "atom1_serNum": 53062, "atom2_serNum": 56916, "donAcc_type": "standard", "distance": 3.453, "atom1_id": "///A/2718/OP2", "atom2_id": "///A/2897/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5106, "atom1_serNum": 53070, "atom2_serNum": 53074, "donAcc_type": "acceptable", "distance": 2.797, "atom1_id": "///A/2718/O2'", "atom2_id": "///A/2718/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5107, "atom1_serNum": 53074, "atom2_serNum": 68125, "donAcc_type": "acceptable", "distance": 3.957, "atom1_id": "///A/2718/O2", "atom2_id": "///J/10/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5108, "atom1_serNum": 53081, "atom2_serNum": 68069, "donAcc_type": "acceptable", "distance": 3.442, "atom1_id": "///A/2719/OP1", "atom2_id": "///J/3/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5109, "atom1_serNum": 53090, "atom2_serNum": 56904, "donAcc_type": "acceptable", "distance": 3.357, "atom1_id": "///A/2719/O2'", "atom2_id": "///A/2897/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5110, "atom1_serNum": 53097, "atom2_serNum": 68073, "donAcc_type": "standard", "distance": 3.833, "atom1_id": "///A/2719/N6", "atom2_id": "///J/4/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 5111, "atom1_serNum": 53112, "atom2_serNum": 56888, "donAcc_type": "acceptable", "distance": 2.846, "atom1_id": "///A/2720/O2'", "atom2_id": "///A/2896/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5112, "atom1_serNum": 53116, "atom2_serNum": 53694, "donAcc_type": "standard", "distance": 2.815, "atom1_id": "///A/2720/O2", "atom2_id": "///A/2747/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5113, "atom1_serNum": 53117, "atom2_serNum": 53692, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///A/2720/N3", "atom2_id": "///A/2747/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5114, "atom1_serNum": 53119, "atom2_serNum": 53691, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///A/2720/N4", "atom2_id": "///A/2747/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5115, "atom1_serNum": 53123, "atom2_serNum": 56868, "donAcc_type": "acceptable", "distance": 3.326, "atom1_id": "///A/2721/OP1", "atom2_id": "///A/2895/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5116, "atom1_serNum": 53128, "atom2_serNum": 56353, "donAcc_type": "standard", "distance": 3.818, "atom1_id": "///A/2721/O4'", "atom2_id": "///A/2871/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5117, "atom1_serNum": 53130, "atom2_serNum": 56855, "donAcc_type": "standard", "distance": 3.659, "atom1_id": "///A/2721/O3'", "atom2_id": "///A/2894/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5118, "atom1_serNum": 53132, "atom2_serNum": 56366, "donAcc_type": "acceptable", "distance": 2.569, "atom1_id": "///A/2721/O2'", "atom2_id": "///A/2872/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5119, "atom1_serNum": 53136, "atom2_serNum": 53671, "donAcc_type": "standard", "distance": 2.826, "atom1_id": "///A/2721/O2", "atom2_id": "///A/2746/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5120, "atom1_serNum": 53136, "atom2_serNum": 56366, "donAcc_type": "acceptable", "distance": 2.651, "atom1_id": "///A/2721/O2", "atom2_id": "///A/2872/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5121, "atom1_serNum": 53137, "atom2_serNum": 53669, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///A/2721/N3", "atom2_id": "///A/2746/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5122, "atom1_serNum": 53139, "atom2_serNum": 53668, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///A/2721/N4", "atom2_id": "///A/2746/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5123, "atom1_serNum": 53159, "atom2_serNum": 53648, "donAcc_type": "standard", "distance": 3.028, "atom1_id": "///A/2722/N6", "atom2_id": "///A/2745/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5124, "atom1_serNum": 53160, "atom2_serNum": 53646, "donAcc_type": "standard", "distance": 2.841, "atom1_id": "///A/2722/N1", "atom2_id": "///A/2745/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5125, "atom1_serNum": 53181, "atom2_serNum": 53628, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///A/2723/O6", "atom2_id": "///A/2744/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5126, "atom1_serNum": 53182, "atom2_serNum": 53626, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///A/2723/N1", "atom2_id": "///A/2744/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5127, "atom1_serNum": 53184, "atom2_serNum": 53625, "donAcc_type": "standard", "distance": 2.782, "atom1_id": "///A/2723/N2", "atom2_id": "///A/2744/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5128, "atom1_serNum": 53201, "atom2_serNum": 53606, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///A/2724/O2", "atom2_id": "///A/2743/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5129, "atom1_serNum": 53202, "atom2_serNum": 53605, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///A/2724/N3", "atom2_id": "///A/2743/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5130, "atom1_serNum": 53217, "atom2_serNum": 53233, "donAcc_type": "acceptable", "distance": 3.150, "atom1_id": "///A/2725/O2'", "atom2_id": "///A/2726/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5131, "atom1_serNum": 53222, "atom2_serNum": 53544, "donAcc_type": "standard", "distance": 2.974, "atom1_id": "///A/2725/N3", "atom2_id": "///A/2740/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5132, "atom1_serNum": 53224, "atom2_serNum": 53543, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///A/2725/O4", "atom2_id": "///A/2740/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5133, "atom1_serNum": 53244, "atom2_serNum": 53523, "donAcc_type": "standard", "distance": 2.987, "atom1_id": "///A/2726/O6", "atom2_id": "///A/2739/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5134, "atom1_serNum": 53245, "atom2_serNum": 53521, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///A/2726/N1", "atom2_id": "///A/2739/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5135, "atom1_serNum": 53247, "atom2_serNum": 53520, "donAcc_type": "standard", "distance": 2.775, "atom1_id": "///A/2726/N2", "atom2_id": "///A/2739/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5136, "atom1_serNum": 53264, "atom2_serNum": 53501, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///A/2727/O2", "atom2_id": "///A/2738/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5137, "atom1_serNum": 53264, "atom2_serNum": 53503, "donAcc_type": "standard", "distance": 3.275, "atom1_id": "///A/2727/O2", "atom2_id": "///A/2738/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5138, "atom1_serNum": 53265, "atom2_serNum": 53500, "donAcc_type": "standard", "distance": 3.020, "atom1_id": "///A/2727/N3", "atom2_id": "///A/2738/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5139, "atom1_serNum": 53280, "atom2_serNum": 53296, "donAcc_type": "acceptable", "distance": 3.034, "atom1_id": "///A/2728/O2'", "atom2_id": "///A/2729/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5140, "atom1_serNum": 53284, "atom2_serNum": 53478, "donAcc_type": "standard", "distance": 2.833, "atom1_id": "///A/2728/O2", "atom2_id": "///A/2737/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5141, "atom1_serNum": 53284, "atom2_serNum": 53480, "donAcc_type": "standard", "distance": 3.259, "atom1_id": "///A/2728/O2", "atom2_id": "///A/2737/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5142, "atom1_serNum": 53285, "atom2_serNum": 53477, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///A/2728/N3", "atom2_id": "///A/2737/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5143, "atom1_serNum": 53304, "atom2_serNum": 53457, "donAcc_type": "standard", "distance": 2.768, "atom1_id": "///A/2729/O2", "atom2_id": "///A/2736/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5144, "atom1_serNum": 53305, "atom2_serNum": 53455, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///A/2729/N3", "atom2_id": "///A/2736/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5145, "atom1_serNum": 53307, "atom2_serNum": 53454, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///A/2729/N4", "atom2_id": "///A/2736/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5146, "atom1_serNum": 53325, "atom2_serNum": 53433, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///A/2730/N3", "atom2_id": "///A/2735/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5147, "atom1_serNum": 53327, "atom2_serNum": 53432, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///A/2730/O4", "atom2_id": "///A/2735/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5148, "atom1_serNum": 53403, "atom2_serNum": 56467, "donAcc_type": "acceptable", "distance": 3.109, "atom1_id": "///A/2734/O2'", "atom2_id": "///A/2877/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5149, "atom1_serNum": 53421, "atom2_serNum": 68522, "donAcc_type": "standard", "distance": 3.350, "atom1_id": "///A/2735/O4'", "atom2_id": "///J/60/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5150, "atom1_serNum": 53425, "atom2_serNum": 68522, "donAcc_type": "acceptable", "distance": 2.640, "atom1_id": "///A/2735/O2'", "atom2_id": "///J/60/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5151, "atom1_serNum": 53468, "atom2_serNum": 68190, "donAcc_type": "standard", "distance": 3.333, "atom1_id": "///A/2737/O3'", "atom2_id": "///J/18/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5152, "atom1_serNum": 53470, "atom2_serNum": 68191, "donAcc_type": "acceptable", "distance": 3.447, "atom1_id": "///A/2737/O2'", "atom2_id": "///J/18/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5153, "atom1_serNum": 53484, "atom2_serNum": 68190, "donAcc_type": "standard", "distance": 3.367, "atom1_id": "///A/2738/OP1", "atom2_id": "///J/18/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5154, "atom1_serNum": 53528, "atom2_serNum": 53590, "donAcc_type": "questionable", "distance": 2.786, "atom1_id": "///A/2740/OP2", "atom2_id": "///A/2743/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5155, "atom1_serNum": 53549, "atom2_serNum": 53598, "donAcc_type": "acceptable", "distance": 3.160, "atom1_id": "///A/2741/OP1", "atom2_id": "///A/2743/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5156, "atom1_serNum": 53578, "atom2_serNum": 53591, "donAcc_type": "acceptable", "distance": 3.154, "atom1_id": "///A/2742/O2'", "atom2_id": "///A/2743/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5157, "atom1_serNum": 53578, "atom2_serNum": 53613, "donAcc_type": "acceptable", "distance": 3.009, "atom1_id": "///A/2742/O2'", "atom2_id": "///A/2744/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5158, "atom1_serNum": 53671, "atom2_serNum": 56364, "donAcc_type": "standard", "distance": 3.388, "atom1_id": "///A/2746/N2", "atom2_id": "///A/2872/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5159, "atom1_serNum": 53671, "atom2_serNum": 56378, "donAcc_type": "standard", "distance": 3.476, "atom1_id": "///A/2746/N2", "atom2_id": "///A/2873/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5160, "atom1_serNum": 53684, "atom2_serNum": 56357, "donAcc_type": "acceptable", "distance": 3.025, "atom1_id": "///A/2747/O2'", "atom2_id": "///A/2872/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5161, "atom1_serNum": 53694, "atom2_serNum": 56343, "donAcc_type": "acceptable", "distance": 3.946, "atom1_id": "///A/2747/N2", "atom2_id": "///A/2871/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5162, "atom1_serNum": 53707, "atom2_serNum": 53723, "donAcc_type": "acceptable", "distance": 3.046, "atom1_id": "///A/2748/O2'", "atom2_id": "///A/2749/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5163, "atom1_serNum": 53707, "atom2_serNum": 56343, "donAcc_type": "acceptable", "distance": 3.642, "atom1_id": "///A/2748/O2'", "atom2_id": "///A/2871/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5164, "atom1_serNum": 53717, "atom2_serNum": 56915, "donAcc_type": "standard", "distance": 3.323, "atom1_id": "///A/2748/N2", "atom2_id": "///A/2897/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5165, "atom1_serNum": 53735, "atom2_serNum": 56935, "donAcc_type": "standard", "distance": 3.315, "atom1_id": "///A/2749/N3", "atom2_id": "///A/2898/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5166, "atom1_serNum": 53737, "atom2_serNum": 56938, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///A/2749/O4", "atom2_id": "///A/2898/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5167, "atom1_serNum": 53786, "atom2_serNum": 62714, "donAcc_type": "standard", "distance": 3.145, "atom1_id": "///A/2752/OP1", "atom2_id": "///D/115/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5168, "atom1_serNum": 53787, "atom2_serNum": 62714, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///A/2752/OP2", "atom2_id": "///D/115/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5169, "atom1_serNum": 53806, "atom2_serNum": 62727, "donAcc_type": "standard", "distance": 2.648, "atom1_id": "///A/2753/OP1", "atom2_id": "///D/117/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5170, "atom1_serNum": 53835, "atom2_serNum": 53849, "donAcc_type": "acceptable", "distance": 2.816, "atom1_id": "///A/2754/O2'", "atom2_id": "///A/2755/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5171, "atom1_serNum": 53835, "atom2_serNum": 53881, "donAcc_type": "acceptable", "distance": 2.865, "atom1_id": "///A/2754/O2'", "atom2_id": "///A/2756/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5172, "atom1_serNum": 53845, "atom2_serNum": 53857, "donAcc_type": "acceptable", "distance": 3.118, "atom1_id": "///A/2754/N3", "atom2_id": "///A/2755/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5173, "atom1_serNum": 53857, "atom2_serNum": 53861, "donAcc_type": "acceptable", "distance": 3.184, "atom1_id": "///A/2755/O2'", "atom2_id": "///A/2755/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5174, "atom1_serNum": 53900, "atom2_serNum": 53916, "donAcc_type": "acceptable", "distance": 3.227, "atom1_id": "///A/2757/O2'", "atom2_id": "///A/2758/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5175, "atom1_serNum": 53943, "atom2_serNum": 53959, "donAcc_type": "acceptable", "distance": 3.176, "atom1_id": "///A/2759/O2'", "atom2_id": "///A/2760/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5176, "atom1_serNum": 53963, "atom2_serNum": 53982, "donAcc_type": "acceptable", "distance": 2.910, "atom1_id": "///A/2760/O2'", "atom2_id": "///A/2761/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5177, "atom1_serNum": 53979, "atom2_serNum": 54005, "donAcc_type": "questionable", "distance": 3.137, "atom1_id": "///A/2761/O5'", "atom2_id": "///A/2762/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5178, "atom1_serNum": 54038, "atom2_serNum": 54809, "donAcc_type": "standard", "distance": 3.456, "atom1_id": "///A/2763/N4", "atom2_id": "///A/2799/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5179, "atom1_serNum": 54058, "atom2_serNum": 54792, "donAcc_type": "standard", "distance": 2.859, "atom1_id": "///A/2764/O6", "atom2_id": "///A/2798/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5180, "atom1_serNum": 54059, "atom2_serNum": 54790, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///A/2764/N1", "atom2_id": "///A/2798/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5181, "atom1_serNum": 54061, "atom2_serNum": 54789, "donAcc_type": "standard", "distance": 2.764, "atom1_id": "///A/2764/N2", "atom2_id": "///A/2798/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5182, "atom1_serNum": 54081, "atom2_serNum": 54772, "donAcc_type": "standard", "distance": 2.910, "atom1_id": "///A/2765/O6", "atom2_id": "///A/2797/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5183, "atom1_serNum": 54082, "atom2_serNum": 54770, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///A/2765/N1", "atom2_id": "///A/2797/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5184, "atom1_serNum": 54084, "atom2_serNum": 54769, "donAcc_type": "standard", "distance": 2.691, "atom1_id": "///A/2765/N2", "atom2_id": "///A/2797/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5185, "atom1_serNum": 54097, "atom2_serNum": 54116, "donAcc_type": "acceptable", "distance": 2.750, "atom1_id": "///A/2766/O2'", "atom2_id": "///A/2767/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5186, "atom1_serNum": 54104, "atom2_serNum": 54752, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///A/2766/O6", "atom2_id": "///A/2796/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5187, "atom1_serNum": 54105, "atom2_serNum": 54750, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///A/2766/N1", "atom2_id": "///A/2796/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5188, "atom1_serNum": 54107, "atom2_serNum": 54749, "donAcc_type": "standard", "distance": 2.755, "atom1_id": "///A/2766/N2", "atom2_id": "///A/2796/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5189, "atom1_serNum": 54128, "atom2_serNum": 54729, "donAcc_type": "questionable", "distance": 2.600, "atom1_id": "///A/2767/N1", "atom2_id": "///A/2795/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5190, "atom1_serNum": 54146, "atom2_serNum": 54685, "donAcc_type": "standard", "distance": 2.708, "atom1_id": "///A/2768/O2", "atom2_id": "///A/2793/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5191, "atom1_serNum": 54147, "atom2_serNum": 54682, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///A/2768/N3", "atom2_id": "///A/2793/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5192, "atom1_serNum": 54154, "atom2_serNum": 54663, "donAcc_type": "standard", "distance": 2.326, "atom1_id": "///A/2769/OP2", "atom2_id": "///A/2792/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5193, "atom1_serNum": 54154, "atom2_serNum": 54665, "donAcc_type": "standard", "distance": 3.200, "atom1_id": "///A/2769/OP2", "atom2_id": "///A/2792/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5194, "atom1_serNum": 54169, "atom2_serNum": 54655, "donAcc_type": "acceptable", "distance": 2.958, "atom1_id": "///A/2769/N6", "atom2_id": "///A/2792/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5195, "atom1_serNum": 54188, "atom2_serNum": 54665, "donAcc_type": "standard", "distance": 2.736, "atom1_id": "///A/2770/N7", "atom2_id": "///A/2792/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5196, "atom1_serNum": 54191, "atom2_serNum": 54655, "donAcc_type": "acceptable", "distance": 2.764, "atom1_id": "///A/2770/N6", "atom2_id": "///A/2792/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5197, "atom1_serNum": 54191, "atom2_serNum": 54666, "donAcc_type": "standard", "distance": 2.815, "atom1_id": "///A/2770/N6", "atom2_id": "///A/2792/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5198, "atom1_serNum": 54214, "atom2_serNum": 54639, "donAcc_type": "standard", "distance": 2.751, "atom1_id": "///A/2771/N1", "atom2_id": "///A/2791/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5199, "atom1_serNum": 54216, "atom2_serNum": 54639, "donAcc_type": "standard", "distance": 2.267, "atom1_id": "///A/2771/N2", "atom2_id": "///A/2791/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5200, "atom1_serNum": 54221, "atom2_serNum": 54493, "donAcc_type": "standard", "distance": 3.089, "atom1_id": "///A/2772/OP2", "atom2_id": "///A/2784/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5201, "atom1_serNum": 54222, "atom2_serNum": 54493, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///A/2772/O5'", "atom2_id": "///A/2784/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5202, "atom1_serNum": 54234, "atom2_serNum": 54621, "donAcc_type": "standard", "distance": 2.708, "atom1_id": "///A/2772/N3", "atom2_id": "///A/2790/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5203, "atom1_serNum": 54236, "atom2_serNum": 54620, "donAcc_type": "standard", "distance": 3.092, "atom1_id": "///A/2772/O4", "atom2_id": "///A/2790/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5204, "atom1_serNum": 54241, "atom2_serNum": 54493, "donAcc_type": "standard", "distance": 2.395, "atom1_id": "///A/2773/OP2", "atom2_id": "///A/2784/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5205, "atom1_serNum": 54256, "atom2_serNum": 54600, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///A/2773/O6", "atom2_id": "///A/2789/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5206, "atom1_serNum": 54257, "atom2_serNum": 54598, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///A/2773/N1", "atom2_id": "///A/2789/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5207, "atom1_serNum": 54259, "atom2_serNum": 54597, "donAcc_type": "standard", "distance": 2.712, "atom1_id": "///A/2773/N2", "atom2_id": "///A/2789/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5208, "atom1_serNum": 54264, "atom2_serNum": 54477, "donAcc_type": "questionable", "distance": 2.819, "atom1_id": "///A/2774/OP2", "atom2_id": "///A/2784/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5209, "atom1_serNum": 54276, "atom2_serNum": 54580, "donAcc_type": "standard", "distance": 2.751, "atom1_id": "///A/2774/O2", "atom2_id": "///A/2788/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5210, "atom1_serNum": 54277, "atom2_serNum": 54578, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/2774/N3", "atom2_id": "///A/2788/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5211, "atom1_serNum": 54279, "atom2_serNum": 54577, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/2774/N4", "atom2_id": "///A/2788/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5212, "atom1_serNum": 54290, "atom2_serNum": 65140, "donAcc_type": "standard", "distance": 3.236, "atom1_id": "///A/2775/O3'", "atom2_id": "///F/75/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5213, "atom1_serNum": 54296, "atom2_serNum": 54555, "donAcc_type": "standard", "distance": 2.350, "atom1_id": "///A/2775/O2", "atom2_id": "///A/2787/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5214, "atom1_serNum": 54297, "atom2_serNum": 54513, "donAcc_type": "standard", "distance": 2.249, "atom1_id": "///A/2775/N3", "atom2_id": "///A/2785/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5215, "atom1_serNum": 54305, "atom2_serNum": 65140, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///A/2776/O5'", "atom2_id": "///F/75/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5216, "atom1_serNum": 54312, "atom2_serNum": 65093, "donAcc_type": "acceptable", "distance": 2.989, "atom1_id": "///A/2776/O2'", "atom2_id": "///F/68/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5217, "atom1_serNum": 54312, "atom2_serNum": 65112, "donAcc_type": "acceptable", "distance": 3.476, "atom1_id": "///A/2776/O2'", "atom2_id": "///F/71/OG", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5218, "atom1_serNum": 54319, "atom2_serNum": 54478, "donAcc_type": "questionable", "distance": 2.809, "atom1_id": "///A/2776/O6", "atom2_id": "///A/2784/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5219, "atom1_serNum": 54320, "atom2_serNum": 54497, "donAcc_type": "standard", "distance": 2.987, "atom1_id": "///A/2776/N1", "atom2_id": "///A/2785/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5220, "atom1_serNum": 54322, "atom2_serNum": 54530, "donAcc_type": "standard", "distance": 2.554, "atom1_id": "///A/2776/N2", "atom2_id": "///A/2786/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5221, "atom1_serNum": 54323, "atom2_serNum": 54533, "donAcc_type": "standard", "distance": 3.183, "atom1_id": "///A/2776/N3", "atom2_id": "///A/2786/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5222, "atom1_serNum": 54331, "atom2_serNum": 65093, "donAcc_type": "acceptable", "distance": 2.810, "atom1_id": "///A/2777/O4'", "atom2_id": "///F/68/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5223, "atom1_serNum": 54335, "atom2_serNum": 54353, "donAcc_type": "acceptable", "distance": 2.658, "atom1_id": "///A/2777/O2'", "atom2_id": "///A/2778/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5224, "atom1_serNum": 54335, "atom2_serNum": 65053, "donAcc_type": "acceptable", "distance": 2.988, "atom1_id": "///A/2777/O2'", "atom2_id": "///F/63/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5225, "atom1_serNum": 54335, "atom2_serNum": 65064, "donAcc_type": "acceptable", "distance": 2.952, "atom1_id": "///A/2777/O2'", "atom2_id": "///F/64/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5226, "atom1_serNum": 54339, "atom2_serNum": 54471, "donAcc_type": "standard", "distance": 3.060, "atom1_id": "///A/2777/N7", "atom2_id": "///A/2783/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5227, "atom1_serNum": 54339, "atom2_serNum": 54473, "donAcc_type": "questionable", "distance": 2.221, "atom1_id": "///A/2777/N7", "atom2_id": "///A/2783/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5228, "atom1_serNum": 54342, "atom2_serNum": 54470, "donAcc_type": "standard", "distance": 2.676, "atom1_id": "///A/2777/N6", "atom2_id": "///A/2783/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5229, "atom1_serNum": 54342, "atom2_serNum": 54471, "donAcc_type": "questionable", "distance": 2.392, "atom1_id": "///A/2777/N6", "atom2_id": "///A/2783/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5230, "atom1_serNum": 54348, "atom2_serNum": 64725, "donAcc_type": "standard", "distance": 3.059, "atom1_id": "///A/2778/OP1", "atom2_id": "///F/4/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5231, "atom1_serNum": 54349, "atom2_serNum": 54379, "donAcc_type": "acceptable", "distance": 2.674, "atom1_id": "///A/2778/OP2", "atom2_id": "///A/2779/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5232, "atom1_serNum": 54357, "atom2_serNum": 65025, "donAcc_type": "acceptable", "distance": 3.409, "atom1_id": "///A/2778/O2'", "atom2_id": "///F/60/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5233, "atom1_serNum": 54361, "atom2_serNum": 54451, "donAcc_type": "standard", "distance": 2.852, "atom1_id": "///A/2778/N7", "atom2_id": "///A/2782/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5234, "atom1_serNum": 54364, "atom2_serNum": 54452, "donAcc_type": "standard", "distance": 2.756, "atom1_id": "///A/2778/N6", "atom2_id": "///A/2782/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5235, "atom1_serNum": 54379, "atom2_serNum": 54394, "donAcc_type": "acceptable", "distance": 3.132, "atom1_id": "///A/2779/O2'", "atom2_id": "///A/2780/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5236, "atom1_serNum": 54379, "atom2_serNum": 54431, "donAcc_type": "acceptable", "distance": 2.234, "atom1_id": "///A/2779/O2'", "atom2_id": "///A/2781/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5237, "atom1_serNum": 54389, "atom2_serNum": 54431, "donAcc_type": "standard", "distance": 2.616, "atom1_id": "///A/2779/N3", "atom2_id": "///A/2781/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5238, "atom1_serNum": 54393, "atom2_serNum": 54411, "donAcc_type": "standard", "distance": 3.019, "atom1_id": "///A/2780/OP2", "atom2_id": "///A/2780/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5239, "atom1_serNum": 54444, "atom2_serNum": 54462, "donAcc_type": "acceptable", "distance": 2.855, "atom1_id": "///A/2782/O2'", "atom2_id": "///A/2783/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5240, "atom1_serNum": 54466, "atom2_serNum": 54484, "donAcc_type": "acceptable", "distance": 2.491, "atom1_id": "///A/2783/O2'", "atom2_id": "///A/2784/O3'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5241, "atom1_serNum": 54466, "atom2_serNum": 54498, "donAcc_type": "acceptable", "distance": 3.447, "atom1_id": "///A/2783/O2'", "atom2_id": "///A/2785/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5242, "atom1_serNum": 54486, "atom2_serNum": 54499, "donAcc_type": "acceptable", "distance": 2.642, "atom1_id": "///A/2784/O2'", "atom2_id": "///A/2785/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5243, "atom1_serNum": 54506, "atom2_serNum": 54518, "donAcc_type": "acceptable", "distance": 2.257, "atom1_id": "///A/2785/O2'", "atom2_id": "///A/2786/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5244, "atom1_serNum": 54511, "atom2_serNum": 54552, "donAcc_type": "standard", "distance": 2.720, "atom1_id": "///A/2785/N3", "atom2_id": "///A/2787/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5245, "atom1_serNum": 54513, "atom2_serNum": 54555, "donAcc_type": "standard", "distance": 2.964, "atom1_id": "///A/2785/O4", "atom2_id": "///A/2787/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5246, "atom1_serNum": 54534, "atom2_serNum": 65093, "donAcc_type": "acceptable", "distance": 2.699, "atom1_id": "///A/2786/N1", "atom2_id": "///F/68/OG1", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 5247, "atom1_serNum": 54539, "atom2_serNum": 65039, "donAcc_type": "questionable", "distance": 2.941, "atom1_id": "///A/2787/OP1", "atom2_id": "///F/61/OE2", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5248, "atom1_serNum": 54692, "atom2_serNum": 54732, "donAcc_type": "standard", "distance": 2.779, "atom1_id": "///A/2794/OP2", "atom2_id": "///A/2795/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5249, "atom1_serNum": 54745, "atom2_serNum": 54756, "donAcc_type": "acceptable", "distance": 2.267, "atom1_id": "///A/2796/O2'", "atom2_id": "///A/2797/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5250, "atom1_serNum": 54756, "atom2_serNum": 65853, "donAcc_type": "standard", "distance": 3.358, "atom1_id": "///A/2797/OP1", "atom2_id": "///G/86/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5251, "atom1_serNum": 54757, "atom2_serNum": 65853, "donAcc_type": "standard", "distance": 2.458, "atom1_id": "///A/2797/OP2", "atom2_id": "///G/86/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5252, "atom1_serNum": 54765, "atom2_serNum": 54781, "donAcc_type": "acceptable", "distance": 3.093, "atom1_id": "///A/2797/O2'", "atom2_id": "///A/2798/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5253, "atom1_serNum": 54785, "atom2_serNum": 54798, "donAcc_type": "acceptable", "distance": 2.738, "atom1_id": "///A/2798/O2'", "atom2_id": "///A/2799/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5254, "atom1_serNum": 54845, "atom2_serNum": 54861, "donAcc_type": "acceptable", "distance": 3.204, "atom1_id": "///A/2801/O2'", "atom2_id": "///A/2802/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5255, "atom1_serNum": 54856, "atom2_serNum": 62930, "donAcc_type": "standard", "distance": 2.381, "atom1_id": "///A/2802/OP1", "atom2_id": "///D/168/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5256, "atom1_serNum": 54877, "atom2_serNum": 62929, "donAcc_type": "questionable", "distance": 3.172, "atom1_id": "///A/2803/OP2", "atom2_id": "///D/168/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5257, "atom1_serNum": 54925, "atom2_serNum": 55037, "donAcc_type": "acceptable", "distance": 3.430, "atom1_id": "///A/2805/O3'", "atom2_id": "///A/2810/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5258, "atom1_serNum": 54937, "atom2_serNum": 54972, "donAcc_type": "acceptable", "distance": 3.240, "atom1_id": "///A/2805/N3", "atom2_id": "///A/2807/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5259, "atom1_serNum": 54941, "atom2_serNum": 55037, "donAcc_type": "acceptable", "distance": 3.086, "atom1_id": "///A/2806/OP2", "atom2_id": "///A/2810/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5260, "atom1_serNum": 54959, "atom2_serNum": 55001, "donAcc_type": "standard", "distance": 3.251, "atom1_id": "///A/2806/N2", "atom2_id": "///A/2808/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5261, "atom1_serNum": 54972, "atom2_serNum": 55014, "donAcc_type": "acceptable", "distance": 3.604, "atom1_id": "///A/2807/O2'", "atom2_id": "///A/2809/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5262, "atom1_serNum": 55082, "atom2_serNum": 55095, "donAcc_type": "acceptable", "distance": 2.939, "atom1_id": "///A/2812/O2'", "atom2_id": "///A/2813/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5263, "atom1_serNum": 55082, "atom2_serNum": 55097, "donAcc_type": "acceptable", "distance": 2.326, "atom1_id": "///A/2812/O2'", "atom2_id": "///A/2813/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5264, "atom1_serNum": 55104, "atom2_serNum": 62127, "donAcc_type": "acceptable", "distance": 3.670, "atom1_id": "///A/2813/O2'", "atom2_id": "///D/37/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5265, "atom1_serNum": 55104, "atom2_serNum": 62181, "donAcc_type": "acceptable", "distance": 2.937, "atom1_id": "///A/2813/O2'", "atom2_id": "///D/44/OD1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5266, "atom1_serNum": 55104, "atom2_serNum": 62182, "donAcc_type": "acceptable", "distance": 2.504, "atom1_id": "///A/2813/O2'", "atom2_id": "///D/44/OD2", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5267, "atom1_serNum": 55144, "atom2_serNum": 55157, "donAcc_type": "acceptable", "distance": 2.861, "atom1_id": "///A/2815/O2'", "atom2_id": "///A/2816/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5268, "atom1_serNum": 55144, "atom2_serNum": 62341, "donAcc_type": "acceptable", "distance": 3.585, "atom1_id": "///A/2815/O2'", "atom2_id": "///D/64/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5269, "atom1_serNum": 55164, "atom2_serNum": 55568, "donAcc_type": "acceptable", "distance": 3.488, "atom1_id": "///A/2816/O2'", "atom2_id": "///A/2835/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5270, "atom1_serNum": 55184, "atom2_serNum": 55556, "donAcc_type": "acceptable", "distance": 2.569, "atom1_id": "///A/2817/O2'", "atom2_id": "///A/2834/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5271, "atom1_serNum": 55204, "atom2_serNum": 57322, "donAcc_type": "acceptable", "distance": 3.226, "atom1_id": "///A/2818/O2'", "atom2_id": "///A/2916/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5272, "atom1_serNum": 55208, "atom2_serNum": 57369, "donAcc_type": "standard", "distance": 2.683, "atom1_id": "///A/2818/O2", "atom2_id": "///A/2918/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5273, "atom1_serNum": 55209, "atom2_serNum": 57367, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///A/2818/N3", "atom2_id": "///A/2918/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5274, "atom1_serNum": 55211, "atom2_serNum": 57366, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///A/2818/N4", "atom2_id": "///A/2918/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5275, "atom1_serNum": 55224, "atom2_serNum": 57347, "donAcc_type": "acceptable", "distance": 3.242, "atom1_id": "///A/2819/O2'", "atom2_id": "///A/2917/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5276, "atom1_serNum": 55251, "atom2_serNum": 55489, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///A/2820/N3", "atom2_id": "///A/2831/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5277, "atom1_serNum": 55253, "atom2_serNum": 55466, "donAcc_type": "standard", "distance": 3.495, "atom1_id": "///A/2820/O4", "atom2_id": "///A/2830/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5278, "atom1_serNum": 55253, "atom2_serNum": 55488, "donAcc_type": "standard", "distance": 2.805, "atom1_id": "///A/2820/O4", "atom2_id": "///A/2831/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5279, "atom1_serNum": 55271, "atom2_serNum": 55467, "donAcc_type": "standard", "distance": 2.767, "atom1_id": "///A/2821/N3", "atom2_id": "///A/2830/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5280, "atom1_serNum": 55273, "atom2_serNum": 55466, "donAcc_type": "standard", "distance": 2.780, "atom1_id": "///A/2821/O4", "atom2_id": "///A/2830/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5281, "atom1_serNum": 55290, "atom2_serNum": 55446, "donAcc_type": "standard", "distance": 2.806, "atom1_id": "///A/2822/O2", "atom2_id": "///A/2829/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5282, "atom1_serNum": 55291, "atom2_serNum": 55444, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///A/2822/N3", "atom2_id": "///A/2829/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5283, "atom1_serNum": 55293, "atom2_serNum": 55443, "donAcc_type": "standard", "distance": 2.829, "atom1_id": "///A/2822/N4", "atom2_id": "///A/2829/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5284, "atom1_serNum": 55310, "atom2_serNum": 55423, "donAcc_type": "standard", "distance": 2.771, "atom1_id": "///A/2823/O2", "atom2_id": "///A/2828/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5285, "atom1_serNum": 55311, "atom2_serNum": 55421, "donAcc_type": "standard", "distance": 2.858, "atom1_id": "///A/2823/N3", "atom2_id": "///A/2828/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5286, "atom1_serNum": 55313, "atom2_serNum": 55420, "donAcc_type": "standard", "distance": 2.837, "atom1_id": "///A/2823/N4", "atom2_id": "///A/2828/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5287, "atom1_serNum": 55326, "atom2_serNum": 55376, "donAcc_type": "acceptable", "distance": 3.636, "atom1_id": "///A/2824/O2'", "atom2_id": "///A/2826/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5288, "atom1_serNum": 55326, "atom2_serNum": 55398, "donAcc_type": "acceptable", "distance": 2.785, "atom1_id": "///A/2824/O2'", "atom2_id": "///A/2827/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5289, "atom1_serNum": 55336, "atom2_serNum": 55383, "donAcc_type": "standard", "distance": 3.311, "atom1_id": "///A/2824/N2", "atom2_id": "///A/2827/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5290, "atom1_serNum": 55336, "atom2_serNum": 55395, "donAcc_type": "standard", "distance": 2.738, "atom1_id": "///A/2824/N2", "atom2_id": "///A/2827/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5291, "atom1_serNum": 55337, "atom2_serNum": 55398, "donAcc_type": "standard", "distance": 3.027, "atom1_id": "///A/2824/N3", "atom2_id": "///A/2827/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5292, "atom1_serNum": 55340, "atom2_serNum": 55373, "donAcc_type": "questionable", "distance": 2.870, "atom1_id": "///A/2825/OP1", "atom2_id": "///A/2826/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5293, "atom1_serNum": 55340, "atom2_serNum": 55376, "donAcc_type": "standard", "distance": 3.268, "atom1_id": "///A/2825/OP1", "atom2_id": "///A/2826/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5294, "atom1_serNum": 55481, "atom2_serNum": 55496, "donAcc_type": "acceptable", "distance": 2.962, "atom1_id": "///A/2831/O2'", "atom2_id": "///A/2832/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5295, "atom1_serNum": 55481, "atom2_serNum": 55499, "donAcc_type": "acceptable", "distance": 2.891, "atom1_id": "///A/2831/O2'", "atom2_id": "///A/2832/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5296, "atom1_serNum": 55511, "atom2_serNum": 57343, "donAcc_type": "standard", "distance": 2.700, "atom1_id": "///A/2832/N1", "atom2_id": "///A/2917/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5297, "atom1_serNum": 55526, "atom2_serNum": 55542, "donAcc_type": "acceptable", "distance": 2.804, "atom1_id": "///A/2833/O2'", "atom2_id": "///A/2834/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5298, "atom1_serNum": 55530, "atom2_serNum": 57321, "donAcc_type": "standard", "distance": 2.677, "atom1_id": "///A/2833/O2", "atom2_id": "///A/2916/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5299, "atom1_serNum": 55531, "atom2_serNum": 57318, "donAcc_type": "standard", "distance": 3.059, "atom1_id": "///A/2833/N3", "atom2_id": "///A/2916/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5300, "atom1_serNum": 55531, "atom2_serNum": 57343, "donAcc_type": "standard", "distance": 3.158, "atom1_id": "///A/2833/N3", "atom2_id": "///A/2917/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5301, "atom1_serNum": 55538, "atom2_serNum": 57299, "donAcc_type": "standard", "distance": 2.235, "atom1_id": "///A/2834/OP2", "atom2_id": "///A/2915/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5302, "atom1_serNum": 55538, "atom2_serNum": 57301, "donAcc_type": "standard", "distance": 3.229, "atom1_id": "///A/2834/OP2", "atom2_id": "///A/2915/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5303, "atom1_serNum": 55572, "atom2_serNum": 57301, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///A/2835/N7", "atom2_id": "///A/2915/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5304, "atom1_serNum": 55575, "atom2_serNum": 57291, "donAcc_type": "acceptable", "distance": 3.074, "atom1_id": "///A/2835/N6", "atom2_id": "///A/2915/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5305, "atom1_serNum": 55575, "atom2_serNum": 57302, "donAcc_type": "standard", "distance": 2.817, "atom1_id": "///A/2835/N6", "atom2_id": "///A/2915/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5306, "atom1_serNum": 55581, "atom2_serNum": 62329, "donAcc_type": "standard", "distance": 3.334, "atom1_id": "///A/2836/OP1", "atom2_id": "///D/63/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5307, "atom1_serNum": 55597, "atom2_serNum": 57278, "donAcc_type": "standard", "distance": 2.969, "atom1_id": "///A/2836/O6", "atom2_id": "///A/2914/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5308, "atom1_serNum": 55598, "atom2_serNum": 57276, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///A/2836/N1", "atom2_id": "///A/2914/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5309, "atom1_serNum": 55600, "atom2_serNum": 57275, "donAcc_type": "standard", "distance": 2.745, "atom1_id": "///A/2836/N2", "atom2_id": "///A/2914/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5310, "atom1_serNum": 55604, "atom2_serNum": 62328, "donAcc_type": "standard", "distance": 3.835, "atom1_id": "///A/2837/OP1", "atom2_id": "///D/62/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5311, "atom1_serNum": 55620, "atom2_serNum": 57258, "donAcc_type": "standard", "distance": 2.983, "atom1_id": "///A/2837/N6", "atom2_id": "///A/2913/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5312, "atom1_serNum": 55621, "atom2_serNum": 57256, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///A/2837/N1", "atom2_id": "///A/2913/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5313, "atom1_serNum": 55640, "atom2_serNum": 57237, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///A/2838/N3", "atom2_id": "///A/2912/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5314, "atom1_serNum": 55642, "atom2_serNum": 57236, "donAcc_type": "standard", "distance": 3.023, "atom1_id": "///A/2838/O4", "atom2_id": "///A/2912/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5315, "atom1_serNum": 55659, "atom2_serNum": 57216, "donAcc_type": "standard", "distance": 2.636, "atom1_id": "///A/2839/O2", "atom2_id": "///A/2911/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5316, "atom1_serNum": 55660, "atom2_serNum": 57214, "donAcc_type": "standard", "distance": 2.758, "atom1_id": "///A/2839/N3", "atom2_id": "///A/2911/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5317, "atom1_serNum": 55662, "atom2_serNum": 57213, "donAcc_type": "standard", "distance": 2.708, "atom1_id": "///A/2839/N4", "atom2_id": "///A/2911/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5318, "atom1_serNum": 55679, "atom2_serNum": 56029, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///A/2840/O2", "atom2_id": "///A/2856/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5319, "atom1_serNum": 55680, "atom2_serNum": 56027, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///A/2840/N3", "atom2_id": "///A/2856/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5320, "atom1_serNum": 55682, "atom2_serNum": 56026, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///A/2840/N4", "atom2_id": "///A/2856/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5321, "atom1_serNum": 55686, "atom2_serNum": 75430, "donAcc_type": "standard", "distance": 3.290, "atom1_id": "///A/2841/OP1", "atom2_id": "///T/41/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5322, "atom1_serNum": 55686, "atom2_serNum": 75431, "donAcc_type": "standard", "distance": 3.333, "atom1_id": "///A/2841/OP1", "atom2_id": "///T/41/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5323, "atom1_serNum": 55693, "atom2_serNum": 68862, "donAcc_type": "standard", "distance": 3.343, "atom1_id": "///A/2841/O3'", "atom2_id": "///J/103/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5324, "atom1_serNum": 55695, "atom2_serNum": 57144, "donAcc_type": "acceptable", "distance": 2.893, "atom1_id": "///A/2841/O2'", "atom2_id": "///A/2908/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5325, "atom1_serNum": 55699, "atom2_serNum": 56006, "donAcc_type": "standard", "distance": 2.724, "atom1_id": "///A/2841/O2", "atom2_id": "///A/2855/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5326, "atom1_serNum": 55699, "atom2_serNum": 57144, "donAcc_type": "acceptable", "distance": 2.171, "atom1_id": "///A/2841/O2", "atom2_id": "///A/2908/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5327, "atom1_serNum": 55700, "atom2_serNum": 56004, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///A/2841/N3", "atom2_id": "///A/2855/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5328, "atom1_serNum": 55702, "atom2_serNum": 56003, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///A/2841/N4", "atom2_id": "///A/2855/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5329, "atom1_serNum": 55706, "atom2_serNum": 68862, "donAcc_type": "standard", "distance": 2.550, "atom1_id": "///A/2842/OP1", "atom2_id": "///J/103/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5330, "atom1_serNum": 55715, "atom2_serNum": 56131, "donAcc_type": "acceptable", "distance": 3.533, "atom1_id": "///A/2842/O2'", "atom2_id": "///A/2861/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5331, "atom1_serNum": 55719, "atom2_serNum": 56127, "donAcc_type": "acceptable", "distance": 3.541, "atom1_id": "///A/2842/O2", "atom2_id": "///A/2861/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5332, "atom1_serNum": 55720, "atom2_serNum": 55982, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///A/2842/N3", "atom2_id": "///A/2854/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5333, "atom1_serNum": 55722, "atom2_serNum": 55981, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///A/2842/O4", "atom2_id": "///A/2854/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5334, "atom1_serNum": 55742, "atom2_serNum": 55961, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///A/2843/O6", "atom2_id": "///A/2853/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5335, "atom1_serNum": 55743, "atom2_serNum": 55959, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///A/2843/N1", "atom2_id": "///A/2853/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5336, "atom1_serNum": 55745, "atom2_serNum": 55958, "donAcc_type": "standard", "distance": 2.749, "atom1_id": "///A/2843/N2", "atom2_id": "///A/2853/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5337, "atom1_serNum": 55758, "atom2_serNum": 55806, "donAcc_type": "acceptable", "distance": 2.262, "atom1_id": "///A/2844/O2'", "atom2_id": "///A/2846/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5338, "atom1_serNum": 55765, "atom2_serNum": 55941, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///A/2844/N6", "atom2_id": "///A/2852/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5339, "atom1_serNum": 55766, "atom2_serNum": 55939, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///A/2844/N1", "atom2_id": "///A/2852/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5340, "atom1_serNum": 55784, "atom2_serNum": 63140, "donAcc_type": "questionable", "distance": 3.058, "atom1_id": "///A/2845/N7", "atom2_id": "///D/197/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 5341, "atom1_serNum": 55793, "atom2_serNum": 62715, "donAcc_type": "standard", "distance": 3.077, "atom1_id": "///A/2846/OP1", "atom2_id": "///D/116/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5342, "atom1_serNum": 55802, "atom2_serNum": 55920, "donAcc_type": "acceptable", "distance": 3.049, "atom1_id": "///A/2846/O2'", "atom2_id": "///A/2851/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5343, "atom1_serNum": 55812, "atom2_serNum": 55919, "donAcc_type": "standard", "distance": 2.933, "atom1_id": "///A/2846/N3", "atom2_id": "///A/2851/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5344, "atom1_serNum": 55815, "atom2_serNum": 62728, "donAcc_type": "standard", "distance": 3.109, "atom1_id": "///A/2847/OP1", "atom2_id": "///D/118/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5345, "atom1_serNum": 55824, "atom2_serNum": 55861, "donAcc_type": "acceptable", "distance": 2.360, "atom1_id": "///A/2847/O2'", "atom2_id": "///A/2849/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5346, "atom1_serNum": 55824, "atom2_serNum": 55897, "donAcc_type": "acceptable", "distance": 3.470, "atom1_id": "///A/2847/O2'", "atom2_id": "///A/2850/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5347, "atom1_serNum": 55834, "atom2_serNum": 55860, "donAcc_type": "standard", "distance": 3.409, "atom1_id": "///A/2847/N2", "atom2_id": "///A/2849/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5348, "atom1_serNum": 55838, "atom2_serNum": 62732, "donAcc_type": "standard", "distance": 3.388, "atom1_id": "///A/2848/OP1", "atom2_id": "///D/119/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5349, "atom1_serNum": 55881, "atom2_serNum": 55899, "donAcc_type": "standard", "distance": 2.522, "atom1_id": "///A/2850/OP2", "atom2_id": "///A/2850/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5350, "atom1_serNum": 55994, "atom2_serNum": 62288, "donAcc_type": "standard", "distance": 2.992, "atom1_id": "///A/2855/O3'", "atom2_id": "///D/57/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5351, "atom1_serNum": 56006, "atom2_serNum": 57154, "donAcc_type": "standard", "distance": 3.515, "atom1_id": "///A/2855/N2", "atom2_id": "///A/2908/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5352, "atom1_serNum": 56019, "atom2_serNum": 57157, "donAcc_type": "acceptable", "distance": 3.357, "atom1_id": "///A/2856/O2'", "atom2_id": "///A/2909/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5353, "atom1_serNum": 56029, "atom2_serNum": 57142, "donAcc_type": "standard", "distance": 3.460, "atom1_id": "///A/2856/N2", "atom2_id": "///A/2908/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5354, "atom1_serNum": 56029, "atom2_serNum": 57158, "donAcc_type": "standard", "distance": 3.161, "atom1_id": "///A/2856/N2", "atom2_id": "///A/2909/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5355, "atom1_serNum": 56033, "atom2_serNum": 62306, "donAcc_type": "standard", "distance": 3.142, "atom1_id": "///A/2857/OP1", "atom2_id": "///D/59/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5356, "atom1_serNum": 56046, "atom2_serNum": 56090, "donAcc_type": "standard", "distance": 2.602, "atom1_id": "///A/2857/O2", "atom2_id": "///A/2859/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5357, "atom1_serNum": 56074, "atom2_serNum": 62287, "donAcc_type": "standard", "distance": 3.087, "atom1_id": "///A/2859/OP2", "atom2_id": "///D/57/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5358, "atom1_serNum": 56080, "atom2_serNum": 62287, "donAcc_type": "standard", "distance": 3.236, "atom1_id": "///A/2859/O3'", "atom2_id": "///D/57/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5359, "atom1_serNum": 56082, "atom2_serNum": 56097, "donAcc_type": "acceptable", "distance": 3.052, "atom1_id": "///A/2859/O2'", "atom2_id": "///A/2860/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5360, "atom1_serNum": 56082, "atom2_serNum": 56098, "donAcc_type": "acceptable", "distance": 2.964, "atom1_id": "///A/2859/O2'", "atom2_id": "///A/2860/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5361, "atom1_serNum": 56082, "atom2_serNum": 57067, "donAcc_type": "acceptable", "distance": 3.035, "atom1_id": "///A/2859/O2'", "atom2_id": "///A/2904/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5362, "atom1_serNum": 56082, "atom2_serNum": 57068, "donAcc_type": "acceptable", "distance": 3.148, "atom1_id": "///A/2859/O2'", "atom2_id": "///A/2904/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5363, "atom1_serNum": 56092, "atom2_serNum": 57148, "donAcc_type": "standard", "distance": 2.734, "atom1_id": "///A/2859/N2", "atom2_id": "///A/2908/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5364, "atom1_serNum": 56093, "atom2_serNum": 57151, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///A/2859/N3", "atom2_id": "///A/2908/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5365, "atom1_serNum": 56097, "atom2_serNum": 62287, "donAcc_type": "standard", "distance": 3.298, "atom1_id": "///A/2860/OP2", "atom2_id": "///D/57/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5366, "atom1_serNum": 56101, "atom2_serNum": 57067, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///A/2860/O4'", "atom2_id": "///A/2904/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5367, "atom1_serNum": 56112, "atom2_serNum": 57052, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///A/2860/N6", "atom2_id": "///A/2904/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5368, "atom1_serNum": 56112, "atom2_serNum": 57053, "donAcc_type": "standard", "distance": 2.651, "atom1_id": "///A/2860/N6", "atom2_id": "///A/2904/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5369, "atom1_serNum": 56112, "atom2_serNum": 57056, "donAcc_type": "standard", "distance": 3.295, "atom1_id": "///A/2860/N6", "atom2_id": "///A/2904/O4'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5370, "atom1_serNum": 56113, "atom2_serNum": 57089, "donAcc_type": "standard", "distance": 3.639, "atom1_id": "///A/2860/N1", "atom2_id": "///A/2905/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5371, "atom1_serNum": 56132, "atom2_serNum": 57130, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///A/2861/N3", "atom2_id": "///A/2907/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5372, "atom1_serNum": 56134, "atom2_serNum": 57129, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///A/2861/O4", "atom2_id": "///A/2907/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5373, "atom1_serNum": 56154, "atom2_serNum": 57109, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///A/2862/N6", "atom2_id": "///A/2906/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5374, "atom1_serNum": 56155, "atom2_serNum": 57107, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///A/2862/N1", "atom2_id": "///A/2906/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5375, "atom1_serNum": 56176, "atom2_serNum": 57089, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///A/2863/O6", "atom2_id": "///A/2905/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5376, "atom1_serNum": 56177, "atom2_serNum": 57087, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///A/2863/N1", "atom2_id": "///A/2905/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5377, "atom1_serNum": 56179, "atom2_serNum": 57086, "donAcc_type": "standard", "distance": 2.769, "atom1_id": "///A/2863/N2", "atom2_id": "///A/2905/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5378, "atom1_serNum": 56199, "atom2_serNum": 57044, "donAcc_type": "questionable", "distance": 2.593, "atom1_id": "///A/2864/O6", "atom2_id": "///A/2903/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5379, "atom1_serNum": 56199, "atom2_serNum": 57045, "donAcc_type": "standard", "distance": 2.824, "atom1_id": "///A/2864/O6", "atom2_id": "///A/2903/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5380, "atom1_serNum": 56200, "atom2_serNum": 57044, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///A/2864/N1", "atom2_id": "///A/2903/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5381, "atom1_serNum": 56202, "atom2_serNum": 68794, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///A/2864/N2", "atom2_id": "///J/95/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 5382, "atom1_serNum": 56206, "atom2_serNum": 68433, "donAcc_type": "acceptable", "distance": 3.669, "atom1_id": "///A/2865/OP1", "atom2_id": "///J/49/OG1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5383, "atom1_serNum": 56215, "atom2_serNum": 68798, "donAcc_type": "acceptable", "distance": 3.785, "atom1_id": "///A/2865/O2'", "atom2_id": "///J/95/OE1", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5384, "atom1_serNum": 56220, "atom2_serNum": 57026, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///A/2865/N3", "atom2_id": "///A/2902/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5385, "atom1_serNum": 56222, "atom2_serNum": 57025, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///A/2865/O4", "atom2_id": "///A/2902/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5386, "atom1_serNum": 56239, "atom2_serNum": 57005, "donAcc_type": "standard", "distance": 2.802, "atom1_id": "///A/2866/O2", "atom2_id": "///A/2901/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5387, "atom1_serNum": 56240, "atom2_serNum": 57003, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///A/2866/N3", "atom2_id": "///A/2901/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5388, "atom1_serNum": 56242, "atom2_serNum": 57002, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///A/2866/N4", "atom2_id": "///A/2901/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5389, "atom1_serNum": 56260, "atom2_serNum": 56981, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///A/2867/N3", "atom2_id": "///A/2900/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5390, "atom1_serNum": 56262, "atom2_serNum": 56980, "donAcc_type": "standard", "distance": 2.973, "atom1_id": "///A/2867/O4", "atom2_id": "///A/2900/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5391, "atom1_serNum": 56282, "atom2_serNum": 56960, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///A/2868/O6", "atom2_id": "///A/2899/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5392, "atom1_serNum": 56283, "atom2_serNum": 56958, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///A/2868/N1", "atom2_id": "///A/2899/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5393, "atom1_serNum": 56285, "atom2_serNum": 56957, "donAcc_type": "standard", "distance": 2.769, "atom1_id": "///A/2868/N2", "atom2_id": "///A/2899/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5394, "atom1_serNum": 56327, "atom2_serNum": 56893, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///A/2870/O6", "atom2_id": "///A/2896/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5395, "atom1_serNum": 56328, "atom2_serNum": 56892, "donAcc_type": "standard", "distance": 3.074, "atom1_id": "///A/2870/N1", "atom2_id": "///A/2896/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5396, "atom1_serNum": 56334, "atom2_serNum": 69386, "donAcc_type": "standard", "distance": 2.676, "atom1_id": "///A/2871/OP1", "atom2_id": "///K/55/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5397, "atom1_serNum": 56350, "atom2_serNum": 56875, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///A/2871/O6", "atom2_id": "///A/2895/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5398, "atom1_serNum": 56351, "atom2_serNum": 56873, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///A/2871/N1", "atom2_id": "///A/2895/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5399, "atom1_serNum": 56353, "atom2_serNum": 56872, "donAcc_type": "standard", "distance": 2.829, "atom1_id": "///A/2871/N2", "atom2_id": "///A/2895/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5400, "atom1_serNum": 56366, "atom2_serNum": 56377, "donAcc_type": "acceptable", "distance": 2.758, "atom1_id": "///A/2872/O2'", "atom2_id": "///A/2873/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5401, "atom1_serNum": 56370, "atom2_serNum": 56853, "donAcc_type": "standard", "distance": 3.171, "atom1_id": "///A/2872/O2", "atom2_id": "///A/2894/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5402, "atom1_serNum": 56371, "atom2_serNum": 56852, "donAcc_type": "standard", "distance": 3.017, "atom1_id": "///A/2872/N3", "atom2_id": "///A/2894/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5403, "atom1_serNum": 56378, "atom2_serNum": 69714, "donAcc_type": "standard", "distance": 3.383, "atom1_id": "///A/2873/OP2", "atom2_id": "///K/97/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5404, "atom1_serNum": 56386, "atom2_serNum": 56830, "donAcc_type": "acceptable", "distance": 2.445, "atom1_id": "///A/2873/O2'", "atom2_id": "///A/2893/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5405, "atom1_serNum": 56396, "atom2_serNum": 56827, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///A/2873/N2", "atom2_id": "///A/2893/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5406, "atom1_serNum": 56397, "atom2_serNum": 56830, "donAcc_type": "standard", "distance": 3.087, "atom1_id": "///A/2873/N3", "atom2_id": "///A/2893/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5407, "atom1_serNum": 56400, "atom2_serNum": 69704, "donAcc_type": "standard", "distance": 2.681, "atom1_id": "///A/2874/OP1", "atom2_id": "///K/96/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5408, "atom1_serNum": 56407, "atom2_serNum": 56787, "donAcc_type": "standard", "distance": 3.268, "atom1_id": "///A/2874/O3'", "atom2_id": "///A/2891/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5409, "atom1_serNum": 56409, "atom2_serNum": 56424, "donAcc_type": "acceptable", "distance": 3.054, "atom1_id": "///A/2874/O2'", "atom2_id": "///A/2875/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5410, "atom1_serNum": 56409, "atom2_serNum": 56787, "donAcc_type": "acceptable", "distance": 2.469, "atom1_id": "///A/2874/O2'", "atom2_id": "///A/2891/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5411, "atom1_serNum": 56416, "atom2_serNum": 69145, "donAcc_type": "standard", "distance": 2.646, "atom1_id": "///A/2874/O6", "atom2_id": "///K/24/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5412, "atom1_serNum": 56416, "atom2_serNum": 69146, "donAcc_type": "standard", "distance": 2.483, "atom1_id": "///A/2874/O6", "atom2_id": "///K/24/NH2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5413, "atom1_serNum": 56419, "atom2_serNum": 56775, "donAcc_type": "standard", "distance": 3.354, "atom1_id": "///A/2874/N2", "atom2_id": "///A/2891/O3'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5414, "atom1_serNum": 56419, "atom2_serNum": 56777, "donAcc_type": "acceptable", "distance": 3.046, "atom1_id": "///A/2874/N2", "atom2_id": "///A/2891/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5415, "atom1_serNum": 56419, "atom2_serNum": 56788, "donAcc_type": "standard", "distance": 3.076, "atom1_id": "///A/2874/N2", "atom2_id": "///A/2891/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5416, "atom1_serNum": 56420, "atom2_serNum": 56787, "donAcc_type": "standard", "distance": 3.184, "atom1_id": "///A/2874/N3", "atom2_id": "///A/2891/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5417, "atom1_serNum": 56424, "atom2_serNum": 56785, "donAcc_type": "standard", "distance": 2.686, "atom1_id": "///A/2875/OP2", "atom2_id": "///A/2891/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5418, "atom1_serNum": 56424, "atom2_serNum": 56787, "donAcc_type": "standard", "distance": 2.568, "atom1_id": "///A/2875/OP2", "atom2_id": "///A/2891/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5419, "atom1_serNum": 56436, "atom2_serNum": 56823, "donAcc_type": "acceptable", "distance": 2.583, "atom1_id": "///A/2875/N7", "atom2_id": "///A/2893/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5420, "atom1_serNum": 56461, "atom2_serNum": 56784, "donAcc_type": "standard", "distance": 3.209, "atom1_id": "///A/2876/N6", "atom2_id": "///A/2891/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5421, "atom1_serNum": 56467, "atom2_serNum": 68522, "donAcc_type": "standard", "distance": 3.391, "atom1_id": "///A/2877/OP1", "atom2_id": "///J/60/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5422, "atom1_serNum": 56483, "atom2_serNum": 56762, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///A/2877/O6", "atom2_id": "///A/2890/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5423, "atom1_serNum": 56484, "atom2_serNum": 56761, "donAcc_type": "standard", "distance": 3.052, "atom1_id": "///A/2877/N1", "atom2_id": "///A/2890/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5424, "atom1_serNum": 56486, "atom2_serNum": 56761, "donAcc_type": "standard", "distance": 3.336, "atom1_id": "///A/2877/N2", "atom2_id": "///A/2890/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5425, "atom1_serNum": 56499, "atom2_serNum": 56515, "donAcc_type": "acceptable", "distance": 2.972, "atom1_id": "///A/2878/O2'", "atom2_id": "///A/2879/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5426, "atom1_serNum": 56504, "atom2_serNum": 56743, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///A/2878/N3", "atom2_id": "///A/2889/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5427, "atom1_serNum": 56504, "atom2_serNum": 56761, "donAcc_type": "standard", "distance": 3.922, "atom1_id": "///A/2878/N3", "atom2_id": "///A/2890/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5428, "atom1_serNum": 56506, "atom2_serNum": 56742, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///A/2878/O4", "atom2_id": "///A/2889/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5429, "atom1_serNum": 56519, "atom2_serNum": 56538, "donAcc_type": "acceptable", "distance": 3.149, "atom1_id": "///A/2879/O2'", "atom2_id": "///A/2880/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5430, "atom1_serNum": 56526, "atom2_serNum": 56722, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///A/2879/O6", "atom2_id": "///A/2888/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5431, "atom1_serNum": 56527, "atom2_serNum": 56720, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///A/2879/N1", "atom2_id": "///A/2888/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5432, "atom1_serNum": 56529, "atom2_serNum": 56719, "donAcc_type": "standard", "distance": 2.756, "atom1_id": "///A/2879/N2", "atom2_id": "///A/2888/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5433, "atom1_serNum": 56547, "atom2_serNum": 56701, "donAcc_type": "standard", "distance": 2.806, "atom1_id": "///A/2880/N3", "atom2_id": "///A/2887/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5434, "atom1_serNum": 56549, "atom2_serNum": 56700, "donAcc_type": "standard", "distance": 2.996, "atom1_id": "///A/2880/O4", "atom2_id": "///A/2887/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5435, "atom1_serNum": 56569, "atom2_serNum": 56680, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///A/2881/O6", "atom2_id": "///A/2886/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5436, "atom1_serNum": 56570, "atom2_serNum": 56678, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///A/2881/N1", "atom2_id": "///A/2886/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5437, "atom1_serNum": 56572, "atom2_serNum": 56677, "donAcc_type": "standard", "distance": 2.757, "atom1_id": "///A/2881/N2", "atom2_id": "///A/2886/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5438, "atom1_serNum": 56585, "atom2_serNum": 56632, "donAcc_type": "acceptable", "distance": 3.449, "atom1_id": "///A/2882/O2'", "atom2_id": "///A/2884/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5439, "atom1_serNum": 56593, "atom2_serNum": 56643, "donAcc_type": "standard", "distance": 3.153, "atom1_id": "///A/2882/N1", "atom2_id": "///A/2885/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5440, "atom1_serNum": 56595, "atom2_serNum": 56643, "donAcc_type": "standard", "distance": 2.182, "atom1_id": "///A/2882/N2", "atom2_id": "///A/2885/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5441, "atom1_serNum": 56595, "atom2_serNum": 56655, "donAcc_type": "standard", "distance": 3.513, "atom1_id": "///A/2882/N2", "atom2_id": "///A/2885/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5442, "atom1_serNum": 56628, "atom2_serNum": 56647, "donAcc_type": "acceptable", "distance": 2.818, "atom1_id": "///A/2884/O2'", "atom2_id": "///A/2885/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5443, "atom1_serNum": 56735, "atom2_serNum": 56753, "donAcc_type": "acceptable", "distance": 2.848, "atom1_id": "///A/2889/O2'", "atom2_id": "///A/2890/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5444, "atom1_serNum": 56749, "atom2_serNum": 56777, "donAcc_type": "acceptable", "distance": 2.339, "atom1_id": "///A/2890/OP2", "atom2_id": "///A/2891/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5445, "atom1_serNum": 56800, "atom2_serNum": 56815, "donAcc_type": "acceptable", "distance": 2.996, "atom1_id": "///A/2892/O2'", "atom2_id": "///A/2893/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5446, "atom1_serNum": 56859, "atom2_serNum": 68465, "donAcc_type": "standard", "distance": 3.438, "atom1_id": "///A/2895/OP1", "atom2_id": "///J/53/NH1", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5447, "atom1_serNum": 56918, "atom2_serNum": 68069, "donAcc_type": "acceptable", "distance": 3.822, "atom1_id": "///A/2897/N2", "atom2_id": "///J/3/OH", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 5448, "atom1_serNum": 56931, "atom2_serNum": 68052, "donAcc_type": "acceptable", "distance": 3.058, "atom1_id": "///A/2898/O2'", "atom2_id": "///J/2/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5449, "atom1_serNum": 56973, "atom2_serNum": 68986, "donAcc_type": "acceptable", "distance": 3.017, "atom1_id": "///A/2900/O2'", "atom2_id": "///K/5/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5450, "atom1_serNum": 56986, "atom2_serNum": 68994, "donAcc_type": "standard", "distance": 3.335, "atom1_id": "///A/2901/OP1", "atom2_id": "///K/5/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5451, "atom1_serNum": 56995, "atom2_serNum": 57011, "donAcc_type": "acceptable", "distance": 2.753, "atom1_id": "///A/2901/O2'", "atom2_id": "///A/2902/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5452, "atom1_serNum": 56995, "atom2_serNum": 57014, "donAcc_type": "acceptable", "distance": 3.090, "atom1_id": "///A/2901/O2'", "atom2_id": "///A/2902/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5453, "atom1_serNum": 57082, "atom2_serNum": 68803, "donAcc_type": "acceptable", "distance": 3.307, "atom1_id": "///A/2905/O2'", "atom2_id": "///J/96/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5454, "atom1_serNum": 57082, "atom2_serNum": 68807, "donAcc_type": "acceptable", "distance": 3.368, "atom1_id": "///A/2905/O2'", "atom2_id": "///J/97/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5455, "atom1_serNum": 57102, "atom2_serNum": 68823, "donAcc_type": "acceptable", "distance": 3.184, "atom1_id": "///A/2906/O2'", "atom2_id": "///J/99/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5456, "atom1_serNum": 57135, "atom2_serNum": 75486, "donAcc_type": "acceptable", "distance": 2.734, "atom1_id": "///A/2908/OP1", "atom2_id": "///T/49/OH", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5457, "atom1_serNum": 57135, "atom2_serNum": 75494, "donAcc_type": "standard", "distance": 3.951, "atom1_id": "///A/2908/OP1", "atom2_id": "///T/50/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5458, "atom1_serNum": 57142, "atom2_serNum": 75420, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///A/2908/O3'", "atom2_id": "///T/40/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5459, "atom1_serNum": 57158, "atom2_serNum": 75420, "donAcc_type": "standard", "distance": 2.955, "atom1_id": "///A/2909/OP2", "atom2_id": "///T/40/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5460, "atom1_serNum": 57173, "atom2_serNum": 75411, "donAcc_type": "standard", "distance": 2.541, "atom1_id": "///A/2909/O4", "atom2_id": "///T/40/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5461, "atom1_serNum": 57251, "atom2_serNum": 57267, "donAcc_type": "acceptable", "distance": 3.084, "atom1_id": "///A/2913/O2'", "atom2_id": "///A/2914/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5462, "atom1_serNum": 57314, "atom2_serNum": 57329, "donAcc_type": "acceptable", "distance": 2.616, "atom1_id": "///A/2916/O2'", "atom2_id": "///A/2917/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5463, "atom1_serNum": 57314, "atom2_serNum": 57332, "donAcc_type": "acceptable", "distance": 3.151, "atom1_id": "///A/2916/O2'", "atom2_id": "///A/2917/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5464, "atom1_serNum": 57404, "atom2_serNum": 57417, "donAcc_type": "acceptable", "distance": 2.835, "atom1_id": "///A/2920/O2'", "atom2_id": "///A/2921/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5465, "atom1_serNum": 57444, "atom2_serNum": 57460, "donAcc_type": "acceptable", "distance": 2.961, "atom1_id": "///A/2922/O2'", "atom2_id": "///A/2923/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5466, "atom1_serNum": 57444, "atom2_serNum": 66228, "donAcc_type": "acceptable", "distance": 3.047, "atom1_id": "///A/2922/O2'", "atom2_id": "///G/135/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5467, "atom1_serNum": 57464, "atom2_serNum": 57482, "donAcc_type": "acceptable", "distance": 3.011, "atom1_id": "///A/2923/O2'", "atom2_id": "///A/2924/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5468, "atom1_serNum": 57520, "atom2_serNum": 58729, "donAcc_type": "acceptable", "distance": 2.213, "atom1_id": "///B/3/OP1", "atom2_id": "///B/59/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5469, "atom1_serNum": 57529, "atom2_serNum": 57541, "donAcc_type": "acceptable", "distance": 2.797, "atom1_id": "///B/3/O2'", "atom2_id": "///B/4/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5470, "atom1_serNum": 57529, "atom2_serNum": 57542, "donAcc_type": "acceptable", "distance": 3.165, "atom1_id": "///B/3/O2'", "atom2_id": "///B/4/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5471, "atom1_serNum": 57534, "atom2_serNum": 59868, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///B/3/N3", "atom2_id": "///B/113/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5472, "atom1_serNum": 57536, "atom2_serNum": 59867, "donAcc_type": "standard", "distance": 2.801, "atom1_id": "///B/3/O4", "atom2_id": "///B/113/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5473, "atom1_serNum": 57540, "atom2_serNum": 57956, "donAcc_type": "standard", "distance": 3.583, "atom1_id": "///B/4/OP1", "atom2_id": "///B/22/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5474, "atom1_serNum": 57541, "atom2_serNum": 58709, "donAcc_type": "acceptable", "distance": 3.154, "atom1_id": "///B/4/OP2", "atom2_id": "///B/58/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5475, "atom1_serNum": 57545, "atom2_serNum": 58009, "donAcc_type": "acceptable", "distance": 3.328, "atom1_id": "///B/4/O4'", "atom2_id": "///B/25/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5476, "atom1_serNum": 57556, "atom2_serNum": 59847, "donAcc_type": "standard", "distance": 2.837, "atom1_id": "///B/4/O6", "atom2_id": "///B/112/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5477, "atom1_serNum": 57557, "atom2_serNum": 59845, "donAcc_type": "standard", "distance": 2.811, "atom1_id": "///B/4/N1", "atom2_id": "///B/112/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5478, "atom1_serNum": 57559, "atom2_serNum": 59844, "donAcc_type": "standard", "distance": 2.715, "atom1_id": "///B/4/N2", "atom2_id": "///B/112/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5479, "atom1_serNum": 57579, "atom2_serNum": 59827, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///B/5/O6", "atom2_id": "///B/111/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5480, "atom1_serNum": 57580, "atom2_serNum": 59825, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///B/5/N1", "atom2_id": "///B/111/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5481, "atom1_serNum": 57582, "atom2_serNum": 59824, "donAcc_type": "standard", "distance": 2.742, "atom1_id": "///B/5/N2", "atom2_id": "///B/111/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5482, "atom1_serNum": 57599, "atom2_serNum": 59805, "donAcc_type": "standard", "distance": 2.757, "atom1_id": "///B/6/O2", "atom2_id": "///B/110/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5483, "atom1_serNum": 57599, "atom2_serNum": 59807, "donAcc_type": "standard", "distance": 3.224, "atom1_id": "///B/6/O2", "atom2_id": "///B/110/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5484, "atom1_serNum": 57599, "atom2_serNum": 59824, "donAcc_type": "questionable", "distance": 3.027, "atom1_id": "///B/6/O2", "atom2_id": "///B/111/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5485, "atom1_serNum": 57600, "atom2_serNum": 59804, "donAcc_type": "standard", "distance": 2.730, "atom1_id": "///B/6/N3", "atom2_id": "///B/110/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5486, "atom1_serNum": 57600, "atom2_serNum": 59825, "donAcc_type": "standard", "distance": 3.833, "atom1_id": "///B/6/N3", "atom2_id": "///B/111/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5487, "atom1_serNum": 57622, "atom2_serNum": 59784, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///B/7/O6", "atom2_id": "///B/109/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5488, "atom1_serNum": 57623, "atom2_serNum": 59782, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///B/7/N1", "atom2_id": "///B/109/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5489, "atom1_serNum": 57625, "atom2_serNum": 59781, "donAcc_type": "standard", "distance": 2.679, "atom1_id": "///B/7/N2", "atom2_id": "///B/109/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5490, "atom1_serNum": 57645, "atom2_serNum": 59764, "donAcc_type": "standard", "distance": 2.830, "atom1_id": "///B/8/O6", "atom2_id": "///B/108/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5491, "atom1_serNum": 57646, "atom2_serNum": 59762, "donAcc_type": "standard", "distance": 2.861, "atom1_id": "///B/8/N1", "atom2_id": "///B/108/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5492, "atom1_serNum": 57648, "atom2_serNum": 59761, "donAcc_type": "standard", "distance": 2.763, "atom1_id": "///B/8/N2", "atom2_id": "///B/108/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5493, "atom1_serNum": 57665, "atom2_serNum": 59744, "donAcc_type": "standard", "distance": 2.750, "atom1_id": "///B/9/O2", "atom2_id": "///B/107/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5494, "atom1_serNum": 57666, "atom2_serNum": 59742, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///B/9/N3", "atom2_id": "///B/107/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5495, "atom1_serNum": 57668, "atom2_serNum": 59741, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///B/9/N4", "atom2_id": "///B/107/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5496, "atom1_serNum": 57695, "atom2_serNum": 57746, "donAcc_type": "acceptable", "distance": 3.076, "atom1_id": "///B/11/OP1", "atom2_id": "///B/13/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5497, "atom1_serNum": 57704, "atom2_serNum": 57738, "donAcc_type": "acceptable", "distance": 2.121, "atom1_id": "///B/11/O2'", "atom2_id": "///B/13/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5498, "atom1_serNum": 57708, "atom2_serNum": 58894, "donAcc_type": "acceptable", "distance": 2.755, "atom1_id": "///B/11/N7", "atom2_id": "///B/67/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5499, "atom1_serNum": 57711, "atom2_serNum": 58894, "donAcc_type": "acceptable", "distance": 2.428, "atom1_id": "///B/11/N6", "atom2_id": "///B/67/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5500, "atom1_serNum": 57718, "atom2_serNum": 58917, "donAcc_type": "acceptable", "distance": 2.360, "atom1_id": "///B/12/OP2", "atom2_id": "///B/68/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5501, "atom1_serNum": 57719, "atom2_serNum": 58917, "donAcc_type": "acceptable", "distance": 3.024, "atom1_id": "///B/12/O5'", "atom2_id": "///B/68/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5502, "atom1_serNum": 57722, "atom2_serNum": 59679, "donAcc_type": "standard", "distance": 3.778, "atom1_id": "///B/12/O4'", "atom2_id": "///B/104/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5503, "atom1_serNum": 57724, "atom2_serNum": 59692, "donAcc_type": "acceptable", "distance": 2.962, "atom1_id": "///B/12/O3'", "atom2_id": "///B/105/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5504, "atom1_serNum": 57737, "atom2_serNum": 59692, "donAcc_type": "acceptable", "distance": 2.455, "atom1_id": "///B/13/OP1", "atom2_id": "///B/105/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5505, "atom1_serNum": 57738, "atom2_serNum": 58904, "donAcc_type": "standard", "distance": 3.623, "atom1_id": "///B/13/OP2", "atom2_id": "///B/67/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5506, "atom1_serNum": 57775, "atom2_serNum": 58881, "donAcc_type": "standard", "distance": 2.878, "atom1_id": "///B/14/O6", "atom2_id": "///B/66/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5507, "atom1_serNum": 57776, "atom2_serNum": 58879, "donAcc_type": "standard", "distance": 2.842, "atom1_id": "///B/14/N1", "atom2_id": "///B/66/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5508, "atom1_serNum": 57778, "atom2_serNum": 58878, "donAcc_type": "standard", "distance": 2.696, "atom1_id": "///B/14/N2", "atom2_id": "///B/66/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5509, "atom1_serNum": 57795, "atom2_serNum": 58861, "donAcc_type": "standard", "distance": 2.635, "atom1_id": "///B/15/O2", "atom2_id": "///B/65/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5510, "atom1_serNum": 57796, "atom2_serNum": 58859, "donAcc_type": "standard", "distance": 2.818, "atom1_id": "///B/15/N3", "atom2_id": "///B/65/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5511, "atom1_serNum": 57798, "atom2_serNum": 58858, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///B/15/N4", "atom2_id": "///B/65/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5512, "atom1_serNum": 57811, "atom2_serNum": 57825, "donAcc_type": "acceptable", "distance": 2.996, "atom1_id": "///B/16/O2'", "atom2_id": "///B/17/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5513, "atom1_serNum": 57818, "atom2_serNum": 58816, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///B/16/O6", "atom2_id": "///B/63/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5514, "atom1_serNum": 57818, "atom2_serNum": 59718, "donAcc_type": "questionable", "distance": 2.848, "atom1_id": "///B/16/O6", "atom2_id": "///B/106/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5515, "atom1_serNum": 57819, "atom2_serNum": 58814, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///B/16/N1", "atom2_id": "///B/63/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5516, "atom1_serNum": 57821, "atom2_serNum": 58813, "donAcc_type": "standard", "distance": 2.691, "atom1_id": "///B/16/N2", "atom2_id": "///B/63/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5517, "atom1_serNum": 57841, "atom2_serNum": 58796, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///B/17/N6", "atom2_id": "///B/62/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5518, "atom1_serNum": 57842, "atom2_serNum": 58794, "donAcc_type": "standard", "distance": 2.743, "atom1_id": "///B/17/N1", "atom2_id": "///B/62/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5519, "atom1_serNum": 57863, "atom2_serNum": 58776, "donAcc_type": "standard", "distance": 2.980, "atom1_id": "///B/18/N6", "atom2_id": "///B/61/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5520, "atom1_serNum": 57864, "atom2_serNum": 58774, "donAcc_type": "standard", "distance": 2.701, "atom1_id": "///B/18/N1", "atom2_id": "///B/61/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5521, "atom1_serNum": 57878, "atom2_serNum": 57892, "donAcc_type": "acceptable", "distance": 2.218, "atom1_id": "///B/19/O2'", "atom2_id": "///B/20/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5522, "atom1_serNum": 57885, "atom2_serNum": 58756, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///B/19/O6", "atom2_id": "///B/60/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5523, "atom1_serNum": 57886, "atom2_serNum": 58754, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///B/19/N1", "atom2_id": "///B/60/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5524, "atom1_serNum": 57888, "atom2_serNum": 58753, "donAcc_type": "standard", "distance": 2.732, "atom1_id": "///B/19/N2", "atom2_id": "///B/60/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5525, "atom1_serNum": 57901, "atom2_serNum": 57916, "donAcc_type": "acceptable", "distance": 2.557, "atom1_id": "///B/20/O2'", "atom2_id": "///B/21/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5526, "atom1_serNum": 57901, "atom2_serNum": 57919, "donAcc_type": "acceptable", "distance": 2.902, "atom1_id": "///B/20/O2'", "atom2_id": "///B/21/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5527, "atom1_serNum": 57908, "atom2_serNum": 58736, "donAcc_type": "standard", "distance": 3.040, "atom1_id": "///B/20/N6", "atom2_id": "///B/59/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5528, "atom1_serNum": 57909, "atom2_serNum": 58734, "donAcc_type": "standard", "distance": 2.816, "atom1_id": "///B/20/N1", "atom2_id": "///B/59/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5529, "atom1_serNum": 57923, "atom2_serNum": 57942, "donAcc_type": "acceptable", "distance": 2.991, "atom1_id": "///B/21/O2'", "atom2_id": "///B/22/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5530, "atom1_serNum": 57930, "atom2_serNum": 58716, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///B/21/O6", "atom2_id": "///B/58/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5531, "atom1_serNum": 57931, "atom2_serNum": 58714, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///B/21/N1", "atom2_id": "///B/58/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5532, "atom1_serNum": 57933, "atom2_serNum": 58713, "donAcc_type": "standard", "distance": 2.766, "atom1_id": "///B/21/N2", "atom2_id": "///B/58/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5533, "atom1_serNum": 57946, "atom2_serNum": 57996, "donAcc_type": "acceptable", "distance": 2.295, "atom1_id": "///B/22/O2'", "atom2_id": "///B/24/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5534, "atom1_serNum": 57953, "atom2_serNum": 58622, "donAcc_type": "acceptable", "distance": 2.147, "atom1_id": "///B/22/O6", "atom2_id": "///B/54/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5535, "atom1_serNum": 57954, "atom2_serNum": 58693, "donAcc_type": "standard", "distance": 2.509, "atom1_id": "///B/22/N1", "atom2_id": "///B/57/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5536, "atom1_serNum": 57956, "atom2_serNum": 58713, "donAcc_type": "standard", "distance": 3.165, "atom1_id": "///B/22/N2", "atom2_id": "///B/58/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5537, "atom1_serNum": 58000, "atom2_serNum": 76126, "donAcc_type": "standard", "distance": 3.014, "atom1_id": "///B/25/OP1", "atom2_id": "///V/39/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5538, "atom1_serNum": 58016, "atom2_serNum": 58629, "donAcc_type": "standard", "distance": 3.189, "atom1_id": "///B/25/N6", "atom2_id": "///B/54/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5539, "atom1_serNum": 58022, "atom2_serNum": 76117, "donAcc_type": "standard", "distance": 3.553, "atom1_id": "///B/26/OP1", "atom2_id": "///V/39/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5540, "atom1_serNum": 58031, "atom2_serNum": 58696, "donAcc_type": "acceptable", "distance": 2.672, "atom1_id": "///B/26/O2'", "atom2_id": "///B/57/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5541, "atom1_serNum": 58035, "atom2_serNum": 58629, "donAcc_type": "questionable", "distance": 3.777, "atom1_id": "///B/26/O2", "atom2_id": "///B/54/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5542, "atom1_serNum": 58042, "atom2_serNum": 75901, "donAcc_type": "standard", "distance": 3.424, "atom1_id": "///B/27/OP1", "atom2_id": "///V/8/ND2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5543, "atom1_serNum": 58051, "atom2_serNum": 58672, "donAcc_type": "acceptable", "distance": 3.364, "atom1_id": "///B/27/O2'", "atom2_id": "///B/56/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5544, "atom1_serNum": 58055, "atom2_serNum": 76111, "donAcc_type": "standard", "distance": 3.424, "atom1_id": "///B/27/N7", "atom2_id": "///V/37/ND2", "atom_pair": "N:N", "residue_pair": "nt:aa" }, { "index": 5545, "atom1_serNum": 58058, "atom2_serNum": 58609, "donAcc_type": "standard", "distance": 2.822, "atom1_id": "///B/27/N6", "atom2_id": "///B/53/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5546, "atom1_serNum": 58059, "atom2_serNum": 58607, "donAcc_type": "standard", "distance": 2.846, "atom1_id": "///B/27/N1", "atom2_id": "///B/53/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5547, "atom1_serNum": 58061, "atom2_serNum": 58671, "donAcc_type": "standard", "distance": 3.123, "atom1_id": "///B/27/N3", "atom2_id": "///B/56/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5548, "atom1_serNum": 58064, "atom2_serNum": 75893, "donAcc_type": "standard", "distance": 3.371, "atom1_id": "///B/28/OP1", "atom2_id": "///V/7/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5549, "atom1_serNum": 58073, "atom2_serNum": 58650, "donAcc_type": "acceptable", "distance": 2.764, "atom1_id": "///B/28/O2'", "atom2_id": "///B/55/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5550, "atom1_serNum": 58077, "atom2_serNum": 58649, "donAcc_type": "standard", "distance": 2.352, "atom1_id": "///B/28/O2", "atom2_id": "///B/55/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5551, "atom1_serNum": 58078, "atom2_serNum": 58607, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///B/28/N3", "atom2_id": "///B/53/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5552, "atom1_serNum": 58080, "atom2_serNum": 58609, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///B/28/N4", "atom2_id": "///B/53/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5553, "atom1_serNum": 58086, "atom2_serNum": 58589, "donAcc_type": "standard", "distance": 3.107, "atom1_id": "///B/29/O5'", "atom2_id": "///B/52/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5554, "atom1_serNum": 58091, "atom2_serNum": 58565, "donAcc_type": "questionable", "distance": 2.988, "atom1_id": "///B/29/O3'", "atom2_id": "///B/51/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5555, "atom1_serNum": 58093, "atom2_serNum": 58097, "donAcc_type": "acceptable", "distance": 2.780, "atom1_id": "///B/29/O2'", "atom2_id": "///B/29/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5556, "atom1_serNum": 58093, "atom2_serNum": 58106, "donAcc_type": "acceptable", "distance": 2.401, "atom1_id": "///B/29/O2'", "atom2_id": "///B/30/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5557, "atom1_serNum": 58093, "atom2_serNum": 58109, "donAcc_type": "acceptable", "distance": 2.800, "atom1_id": "///B/29/O2'", "atom2_id": "///B/30/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5558, "atom1_serNum": 58093, "atom2_serNum": 58564, "donAcc_type": "acceptable", "distance": 2.742, "atom1_id": "///B/29/O2'", "atom2_id": "///B/51/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5559, "atom1_serNum": 58097, "atom2_serNum": 58522, "donAcc_type": "standard", "distance": 2.787, "atom1_id": "///B/29/O2", "atom2_id": "///B/49/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5560, "atom1_serNum": 58097, "atom2_serNum": 58564, "donAcc_type": "standard", "distance": 2.008, "atom1_id": "///B/29/O2", "atom2_id": "///B/51/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5561, "atom1_serNum": 58098, "atom2_serNum": 58520, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///B/29/N3", "atom2_id": "///B/49/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5562, "atom1_serNum": 58098, "atom2_serNum": 58542, "donAcc_type": "standard", "distance": 3.315, "atom1_id": "///B/29/N3", "atom2_id": "///B/50/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5563, "atom1_serNum": 58100, "atom2_serNum": 58519, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///B/29/N4", "atom2_id": "///B/49/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5564, "atom1_serNum": 58117, "atom2_serNum": 58499, "donAcc_type": "standard", "distance": 2.663, "atom1_id": "///B/30/O2", "atom2_id": "///B/48/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5565, "atom1_serNum": 58118, "atom2_serNum": 58497, "donAcc_type": "standard", "distance": 2.806, "atom1_id": "///B/30/N3", "atom2_id": "///B/48/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5566, "atom1_serNum": 58120, "atom2_serNum": 58496, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///B/30/N4", "atom2_id": "///B/48/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5567, "atom1_serNum": 58143, "atom2_serNum": 58183, "donAcc_type": "standard", "distance": 3.495, "atom1_id": "///B/31/N2", "atom2_id": "///B/33/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5568, "atom1_serNum": 58156, "atom2_serNum": 58183, "donAcc_type": "acceptable", "distance": 3.690, "atom1_id": "///B/32/O2'", "atom2_id": "///B/33/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5569, "atom1_serNum": 58163, "atom2_serNum": 58405, "donAcc_type": "acceptable", "distance": 2.700, "atom1_id": "///B/32/O4", "atom2_id": "///B/44/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5570, "atom1_serNum": 58194, "atom2_serNum": 58476, "donAcc_type": "standard", "distance": 3.456, "atom1_id": "///B/34/O3'", "atom2_id": "///B/47/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5571, "atom1_serNum": 58209, "atom2_serNum": 58476, "donAcc_type": "standard", "distance": 3.130, "atom1_id": "///B/35/O5'", "atom2_id": "///B/47/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5572, "atom1_serNum": 58216, "atom2_serNum": 58227, "donAcc_type": "acceptable", "distance": 3.156, "atom1_id": "///B/35/O2'", "atom2_id": "///B/36/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5573, "atom1_serNum": 58223, "atom2_serNum": 58447, "donAcc_type": "acceptable", "distance": 3.071, "atom1_id": "///B/35/N4", "atom2_id": "///B/46/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5574, "atom1_serNum": 58232, "atom2_serNum": 76514, "donAcc_type": "standard", "distance": 2.797, "atom1_id": "///B/36/O4'", "atom2_id": "///V/103/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5575, "atom1_serNum": 58240, "atom2_serNum": 58370, "donAcc_type": "standard", "distance": 2.816, "atom1_id": "///B/36/O2", "atom2_id": "///B/42/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5576, "atom1_serNum": 58241, "atom2_serNum": 58368, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///B/36/N3", "atom2_id": "///B/42/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5577, "atom1_serNum": 58243, "atom2_serNum": 58367, "donAcc_type": "standard", "distance": 2.782, "atom1_id": "///B/36/N4", "atom2_id": "///B/42/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5578, "atom1_serNum": 58256, "atom2_serNum": 58370, "donAcc_type": "acceptable", "distance": 2.518, "atom1_id": "///B/37/O2'", "atom2_id": "///B/42/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5579, "atom1_serNum": 58264, "atom2_serNum": 58305, "donAcc_type": "standard", "distance": 2.631, "atom1_id": "///B/37/N1", "atom2_id": "///B/39/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5580, "atom1_serNum": 58278, "atom2_serNum": 58331, "donAcc_type": "acceptable", "distance": 2.754, "atom1_id": "///B/38/O2'", "atom2_id": "///B/41/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5581, "atom1_serNum": 58278, "atom2_serNum": 58333, "donAcc_type": "acceptable", "distance": 2.898, "atom1_id": "///B/38/O2'", "atom2_id": "///B/41/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5582, "atom1_serNum": 58283, "atom2_serNum": 58418, "donAcc_type": "standard", "distance": 3.034, "atom1_id": "///B/38/N3", "atom2_id": "///B/45/OP1", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5583, "atom1_serNum": 58285, "atom2_serNum": 58405, "donAcc_type": "acceptable", "distance": 2.531, "atom1_id": "///B/38/O4", "atom2_id": "///B/44/O2'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5584, "atom1_serNum": 58285, "atom2_serNum": 58431, "donAcc_type": "questionable", "distance": 2.840, "atom1_id": "///B/38/O4", "atom2_id": "///B/45/O2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5585, "atom1_serNum": 58294, "atom2_serNum": 58331, "donAcc_type": "questionable", "distance": 2.594, "atom1_id": "///B/39/O4'", "atom2_id": "///B/41/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5586, "atom1_serNum": 58320, "atom2_serNum": 58390, "donAcc_type": "acceptable", "distance": 2.588, "atom1_id": "///B/40/O2'", "atom2_id": "///B/43/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5587, "atom1_serNum": 58320, "atom2_serNum": 58412, "donAcc_type": "acceptable", "distance": 2.889, "atom1_id": "///B/40/O2'", "atom2_id": "///B/44/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5588, "atom1_serNum": 58320, "atom2_serNum": 58413, "donAcc_type": "acceptable", "distance": 2.435, "atom1_id": "///B/40/O2'", "atom2_id": "///B/44/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5589, "atom1_serNum": 58324, "atom2_serNum": 58412, "donAcc_type": "standard", "distance": 2.555, "atom1_id": "///B/40/O2", "atom2_id": "///B/44/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5590, "atom1_serNum": 58370, "atom2_serNum": 58431, "donAcc_type": "standard", "distance": 3.204, "atom1_id": "///B/42/N2", "atom2_id": "///B/45/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5591, "atom1_serNum": 58376, "atom2_serNum": 58409, "donAcc_type": "questionable", "distance": 3.048, "atom1_id": "///B/43/O5'", "atom2_id": "///B/44/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5592, "atom1_serNum": 58397, "atom2_serNum": 75893, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///B/44/OP2", "atom2_id": "///V/7/NZ", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5593, "atom1_serNum": 58447, "atom2_serNum": 58460, "donAcc_type": "acceptable", "distance": 2.372, "atom1_id": "///B/46/O2'", "atom2_id": "///B/47/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5594, "atom1_serNum": 58447, "atom2_serNum": 58462, "donAcc_type": "acceptable", "distance": 2.989, "atom1_id": "///B/46/O2'", "atom2_id": "///B/47/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5595, "atom1_serNum": 58461, "atom2_serNum": 76519, "donAcc_type": "standard", "distance": 3.244, "atom1_id": "///B/47/OP2", "atom2_id": "///V/105/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5596, "atom1_serNum": 58480, "atom2_serNum": 76278, "donAcc_type": "standard", "distance": 2.859, "atom1_id": "///B/48/OP1", "atom2_id": "///V/71/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5597, "atom1_serNum": 58512, "atom2_serNum": 58528, "donAcc_type": "acceptable", "distance": 2.479, "atom1_id": "///B/49/O2'", "atom2_id": "///B/50/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5598, "atom1_serNum": 58512, "atom2_serNum": 58531, "donAcc_type": "acceptable", "distance": 2.600, "atom1_id": "///B/49/O2'", "atom2_id": "///B/50/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5599, "atom1_serNum": 58543, "atom2_serNum": 58586, "donAcc_type": "questionable", "distance": 2.866, "atom1_id": "///B/50/N1", "atom2_id": "///B/52/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5600, "atom1_serNum": 58545, "atom2_serNum": 58561, "donAcc_type": "questionable", "distance": 3.009, "atom1_id": "///B/50/N3", "atom2_id": "///B/51/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5601, "atom1_serNum": 58602, "atom2_serNum": 58646, "donAcc_type": "acceptable", "distance": 2.273, "atom1_id": "///B/53/O2'", "atom2_id": "///B/55/N7", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5602, "atom1_serNum": 58606, "atom2_serNum": 58649, "donAcc_type": "standard", "distance": 2.607, "atom1_id": "///B/53/O2", "atom2_id": "///B/55/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5603, "atom1_serNum": 58620, "atom2_serNum": 58656, "donAcc_type": "questionable", "distance": 3.065, "atom1_id": "///B/54/O3'", "atom2_id": "///B/56/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5604, "atom1_serNum": 58626, "atom2_serNum": 58671, "donAcc_type": "standard", "distance": 2.834, "atom1_id": "///B/54/O2", "atom2_id": "///B/56/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5605, "atom1_serNum": 58627, "atom2_serNum": 58693, "donAcc_type": "standard", "distance": 3.168, "atom1_id": "///B/54/N3", "atom2_id": "///B/57/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5606, "atom1_serNum": 58821, "atom2_serNum": 59721, "donAcc_type": "standard", "distance": 3.004, "atom1_id": "///B/64/OP2", "atom2_id": "///B/106/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5607, "atom1_serNum": 58827, "atom2_serNum": 58866, "donAcc_type": "questionable", "distance": 3.037, "atom1_id": "///B/64/O3'", "atom2_id": "///B/66/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5608, "atom1_serNum": 58829, "atom2_serNum": 58866, "donAcc_type": "acceptable", "distance": 3.188, "atom1_id": "///B/64/O2'", "atom2_id": "///B/66/OP2", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5609, "atom1_serNum": 58836, "atom2_serNum": 59684, "donAcc_type": "standard", "distance": 3.316, "atom1_id": "///B/64/N6", "atom2_id": "///B/105/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5610, "atom1_serNum": 58836, "atom2_serNum": 59685, "donAcc_type": "standard", "distance": 3.033, "atom1_id": "///B/64/N6", "atom2_id": "///B/105/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5611, "atom1_serNum": 58836, "atom2_serNum": 59706, "donAcc_type": "standard", "distance": 2.494, "atom1_id": "///B/64/N6", "atom2_id": "///B/106/OP2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5612, "atom1_serNum": 58837, "atom2_serNum": 59707, "donAcc_type": "questionable", "distance": 2.740, "atom1_id": "///B/64/N1", "atom2_id": "///B/106/O5'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5613, "atom1_serNum": 58855, "atom2_serNum": 59721, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///B/65/N7", "atom2_id": "///B/106/N4", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5614, "atom1_serNum": 58858, "atom2_serNum": 59719, "donAcc_type": "questionable", "distance": 2.831, "atom1_id": "///B/65/O6", "atom2_id": "///B/106/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5615, "atom1_serNum": 58921, "atom2_serNum": 59679, "donAcc_type": "standard", "distance": 2.756, "atom1_id": "///B/68/O2", "atom2_id": "///B/104/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5616, "atom1_serNum": 58922, "atom2_serNum": 59677, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///B/68/N3", "atom2_id": "///B/104/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5617, "atom1_serNum": 58924, "atom2_serNum": 59676, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///B/68/N4", "atom2_id": "///B/104/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5618, "atom1_serNum": 58941, "atom2_serNum": 59656, "donAcc_type": "standard", "distance": 2.724, "atom1_id": "///B/69/O2", "atom2_id": "///B/103/N2", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5619, "atom1_serNum": 58942, "atom2_serNum": 59654, "donAcc_type": "standard", "distance": 2.865, "atom1_id": "///B/69/N3", "atom2_id": "///B/103/N1", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5620, "atom1_serNum": 58944, "atom2_serNum": 59653, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///B/69/N4", "atom2_id": "///B/103/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5621, "atom1_serNum": 58957, "atom2_serNum": 58976, "donAcc_type": "acceptable", "distance": 2.983, "atom1_id": "///B/70/O2'", "atom2_id": "///B/71/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5622, "atom1_serNum": 58957, "atom2_serNum": 59631, "donAcc_type": "acceptable", "distance": 3.042, "atom1_id": "///B/70/O2'", "atom2_id": "///B/102/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5623, "atom1_serNum": 58967, "atom2_serNum": 59628, "donAcc_type": "standard", "distance": 2.778, "atom1_id": "///B/70/N2", "atom2_id": "///B/102/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5624, "atom1_serNum": 58968, "atom2_serNum": 59631, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///B/70/N3", "atom2_id": "///B/102/N6", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5625, "atom1_serNum": 58984, "atom2_serNum": 59609, "donAcc_type": "standard", "distance": 3.186, "atom1_id": "///B/71/N7", "atom2_id": "///B/101/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5626, "atom1_serNum": 58987, "atom2_serNum": 59608, "donAcc_type": "standard", "distance": 2.251, "atom1_id": "///B/71/N6", "atom2_id": "///B/101/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5627, "atom1_serNum": 59009, "atom2_serNum": 59589, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///B/72/O4", "atom2_id": "///B/100/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5628, "atom1_serNum": 59009, "atom2_serNum": 59609, "donAcc_type": "standard", "distance": 3.175, "atom1_id": "///B/72/O4", "atom2_id": "///B/101/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5629, "atom1_serNum": 59029, "atom2_serNum": 59566, "donAcc_type": "standard", "distance": 2.535, "atom1_id": "///B/73/O6", "atom2_id": "///B/99/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5630, "atom1_serNum": 59053, "atom2_serNum": 59543, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///B/74/N1", "atom2_id": "///B/98/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5631, "atom1_serNum": 59055, "atom2_serNum": 59543, "donAcc_type": "standard", "distance": 2.450, "atom1_id": "///B/74/N2", "atom2_id": "///B/98/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5632, "atom1_serNum": 59072, "atom2_serNum": 59521, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///B/75/O2", "atom2_id": "///B/97/N6", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5633, "atom1_serNum": 59073, "atom2_serNum": 59518, "donAcc_type": "standard", "distance": 2.858, "atom1_id": "///B/75/N3", "atom2_id": "///B/97/N7", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5634, "atom1_serNum": 59092, "atom2_serNum": 59501, "donAcc_type": "standard", "distance": 2.761, "atom1_id": "///B/76/N7", "atom2_id": "///B/96/N2", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5635, "atom1_serNum": 59095, "atom2_serNum": 59491, "donAcc_type": "acceptable", "distance": 3.106, "atom1_id": "///B/76/N6", "atom2_id": "///B/96/O2'", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5636, "atom1_serNum": 59095, "atom2_serNum": 59502, "donAcc_type": "standard", "distance": 2.834, "atom1_id": "///B/76/N6", "atom2_id": "///B/96/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5637, "atom1_serNum": 59117, "atom2_serNum": 59476, "donAcc_type": "standard", "distance": 2.788, "atom1_id": "///B/77/O6", "atom2_id": "///B/95/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5638, "atom1_serNum": 59117, "atom2_serNum": 59478, "donAcc_type": "questionable", "distance": 2.174, "atom1_id": "///B/77/O6", "atom2_id": "///B/95/O4", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5639, "atom1_serNum": 59120, "atom2_serNum": 59475, "donAcc_type": "standard", "distance": 3.051, "atom1_id": "///B/77/N2", "atom2_id": "///B/95/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5640, "atom1_serNum": 59133, "atom2_serNum": 59149, "donAcc_type": "acceptable", "distance": 3.190, "atom1_id": "///B/78/O2'", "atom2_id": "///B/79/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5641, "atom1_serNum": 59137, "atom2_serNum": 59456, "donAcc_type": "standard", "distance": 2.773, "atom1_id": "///B/78/O2", "atom2_id": "///B/94/N1", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5642, "atom1_serNum": 59138, "atom2_serNum": 59455, "donAcc_type": "standard", "distance": 2.788, "atom1_id": "///B/78/N3", "atom2_id": "///B/94/O6", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5643, "atom1_serNum": 59160, "atom2_serNum": 59435, "donAcc_type": "standard", "distance": 2.282, "atom1_id": "///B/79/N4", "atom2_id": "///B/93/O4", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5644, "atom1_serNum": 59173, "atom2_serNum": 75061, "donAcc_type": "acceptable", "distance": 3.252, "atom1_id": "///B/80/O2'", "atom2_id": "///S/52/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5645, "atom1_serNum": 59180, "atom2_serNum": 59415, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///B/80/O6", "atom2_id": "///B/92/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5646, "atom1_serNum": 59181, "atom2_serNum": 59413, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///B/80/N1", "atom2_id": "///B/92/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5647, "atom1_serNum": 59183, "atom2_serNum": 59412, "donAcc_type": "standard", "distance": 2.686, "atom1_id": "///B/80/N2", "atom2_id": "///B/92/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5648, "atom1_serNum": 59192, "atom2_serNum": 75061, "donAcc_type": "standard", "distance": 3.215, "atom1_id": "///B/81/O4'", "atom2_id": "///S/52/NE2", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5649, "atom1_serNum": 59203, "atom2_serNum": 59395, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///B/81/O6", "atom2_id": "///B/91/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5650, "atom1_serNum": 59204, "atom2_serNum": 59393, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///B/81/N1", "atom2_id": "///B/91/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5651, "atom1_serNum": 59206, "atom2_serNum": 59392, "donAcc_type": "standard", "distance": 2.733, "atom1_id": "///B/81/N2", "atom2_id": "///B/91/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5652, "atom1_serNum": 59226, "atom2_serNum": 59375, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///B/82/O6", "atom2_id": "///B/90/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5653, "atom1_serNum": 59227, "atom2_serNum": 59373, "donAcc_type": "standard", "distance": 2.861, "atom1_id": "///B/82/N1", "atom2_id": "///B/90/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5654, "atom1_serNum": 59229, "atom2_serNum": 59372, "donAcc_type": "standard", "distance": 2.741, "atom1_id": "///B/82/N2", "atom2_id": "///B/90/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5655, "atom1_serNum": 59249, "atom2_serNum": 59355, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///B/83/O6", "atom2_id": "///B/89/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5656, "atom1_serNum": 59250, "atom2_serNum": 59353, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///B/83/N1", "atom2_id": "///B/89/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5657, "atom1_serNum": 59252, "atom2_serNum": 59352, "donAcc_type": "standard", "distance": 2.757, "atom1_id": "///B/83/N2", "atom2_id": "///B/89/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5658, "atom1_serNum": 59272, "atom2_serNum": 59335, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///B/84/O6", "atom2_id": "///B/88/N4", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5659, "atom1_serNum": 59273, "atom2_serNum": 59312, "donAcc_type": "standard", "distance": 2.418, "atom1_id": "///B/84/N1", "atom2_id": "///B/86/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5660, "atom1_serNum": 59273, "atom2_serNum": 59333, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///B/84/N1", "atom2_id": "///B/88/N3", "atom_pair": "N:N", "residue_pair": "nt:nt" }, { "index": 5661, "atom1_serNum": 59275, "atom2_serNum": 59332, "donAcc_type": "standard", "distance": 2.725, "atom1_id": "///B/84/N2", "atom2_id": "///B/88/O2", "atom_pair": "N:O", "residue_pair": "nt:nt" }, { "index": 5662, "atom1_serNum": 59312, "atom2_serNum": 59333, "donAcc_type": "questionable", "distance": 2.657, "atom1_id": "///B/86/O2", "atom2_id": "///B/88/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5663, "atom1_serNum": 59328, "atom2_serNum": 59344, "donAcc_type": "acceptable", "distance": 2.966, "atom1_id": "///B/88/O2'", "atom2_id": "///B/89/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5664, "atom1_serNum": 59348, "atom2_serNum": 59361, "donAcc_type": "acceptable", "distance": 2.669, "atom1_id": "///B/89/O2'", "atom2_id": "///B/90/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5665, "atom1_serNum": 59408, "atom2_serNum": 59424, "donAcc_type": "acceptable", "distance": 3.129, "atom1_id": "///B/92/O2'", "atom2_id": "///B/93/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5666, "atom1_serNum": 59491, "atom2_serNum": 59510, "donAcc_type": "acceptable", "distance": 2.999, "atom1_id": "///B/96/O2'", "atom2_id": "///B/97/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5667, "atom1_serNum": 59604, "atom2_serNum": 59620, "donAcc_type": "acceptable", "distance": 3.051, "atom1_id": "///B/101/O2'", "atom2_id": "///B/102/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5668, "atom1_serNum": 59646, "atom2_serNum": 59662, "donAcc_type": "acceptable", "distance": 2.915, "atom1_id": "///B/103/O2'", "atom2_id": "///B/104/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5669, "atom1_serNum": 59734, "atom2_serNum": 59750, "donAcc_type": "acceptable", "distance": 2.728, "atom1_id": "///B/107/O2'", "atom2_id": "///B/108/O5'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5670, "atom1_serNum": 59734, "atom2_serNum": 59753, "donAcc_type": "acceptable", "distance": 3.168, "atom1_id": "///B/107/O2'", "atom2_id": "///B/108/O4'", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5671, "atom1_serNum": 59807, "atom2_serNum": 76198, "donAcc_type": "standard", "distance": 3.911, "atom1_id": "///B/110/N2", "atom2_id": "///V/50/O", "atom_pair": "N:O", "residue_pair": "nt:aa" }, { "index": 5672, "atom1_serNum": 59816, "atom2_serNum": 76198, "donAcc_type": "questionable", "distance": 3.207, "atom1_id": "///B/111/O4'", "atom2_id": "///V/50/O", "atom_pair": "O:O", "residue_pair": "nt:aa" }, { "index": 5673, "atom1_serNum": 59820, "atom2_serNum": 59831, "donAcc_type": "acceptable", "distance": 2.573, "atom1_id": "///B/111/O2'", "atom2_id": "///B/112/OP1", "atom_pair": "O:O", "residue_pair": "nt:nt" }, { "index": 5674, "atom1_serNum": 59820, "atom2_serNum": 76206, "donAcc_type": "acceptable", "distance": 2.946, "atom1_id": "///B/111/O2'", "atom2_id": "///V/52/N", "atom_pair": "O:N", "residue_pair": "nt:aa" }, { "index": 5675, "atom1_serNum": 59882, "atom2_serNum": 59892, "donAcc_type": "acceptable", "distance": 2.862, "atom1_id": "///B/114/O2'", "atom2_id": "///B/114/N3", "atom_pair": "O:N", "residue_pair": "nt:nt" }, { "index": 5676, "atom1_serNum": 59895, "atom2_serNum": 60039, "donAcc_type": "standard", "distance": 2.695, "atom1_id": "///C/2/N", "atom2_id": "///C/20/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5677, "atom1_serNum": 59895, "atom2_serNum": 60040, "donAcc_type": "standard", "distance": 3.059, "atom1_id": "///C/2/N", "atom2_id": "///C/20/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5678, "atom1_serNum": 59898, "atom2_serNum": 60033, "donAcc_type": "standard", "distance": 3.256, "atom1_id": "///C/2/O", "atom2_id": "///C/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5679, "atom1_serNum": 59908, "atom2_serNum": 60023, "donAcc_type": "standard", "distance": 3.184, "atom1_id": "///C/4/N", "atom2_id": "///C/18/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5680, "atom1_serNum": 59911, "atom2_serNum": 60020, "donAcc_type": "standard", "distance": 3.335, "atom1_id": "///C/4/O", "atom2_id": "///C/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5681, "atom1_serNum": 59926, "atom2_serNum": 60008, "donAcc_type": "standard", "distance": 3.761, "atom1_id": "///C/6/N", "atom2_id": "///C/16/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5682, "atom1_serNum": 59941, "atom2_serNum": 59954, "donAcc_type": "standard", "distance": 2.667, "atom1_id": "///C/7/O", "atom2_id": "///C/9/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5683, "atom1_serNum": 59966, "atom2_serNum": 59975, "donAcc_type": "acceptable", "distance": 3.290, "atom1_id": "///C/10/OG", "atom2_id": "///C/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5684, "atom1_serNum": 59973, "atom2_serNum": 60000, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///C/11/OD1", "atom2_id": "///C/14/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5685, "atom1_serNum": 60004, "atom2_serNum": 61410, "donAcc_type": "standard", "distance": 2.983, "atom1_id": "///C/15/O", "atom2_id": "///C/204/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5686, "atom1_serNum": 60013, "atom2_serNum": 61406, "donAcc_type": "standard", "distance": 3.182, "atom1_id": "///C/17/N", "atom2_id": "///C/204/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5687, "atom1_serNum": 60016, "atom2_serNum": 60018, "donAcc_type": "acceptable", "distance": 3.034, "atom1_id": "///C/17/O", "atom2_id": "///C/17/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5688, "atom1_serNum": 60016, "atom2_serNum": 61406, "donAcc_type": "questionable", "distance": 2.862, "atom1_id": "///C/17/O", "atom2_id": "///C/204/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5689, "atom1_serNum": 60018, "atom2_serNum": 61390, "donAcc_type": "acceptable", "distance": 3.966, "atom1_id": "///C/17/OG1", "atom2_id": "///C/202/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5690, "atom1_serNum": 60018, "atom2_serNum": 61403, "donAcc_type": "acceptable", "distance": 2.883, "atom1_id": "///C/17/OG1", "atom2_id": "///C/204/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5691, "atom1_serNum": 60032, "atom2_serNum": 60041, "donAcc_type": "acceptable", "distance": 3.200, "atom1_id": "///C/19/OG", "atom2_id": "///C/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5692, "atom1_serNum": 60033, "atom2_serNum": 60039, "donAcc_type": "standard", "distance": 2.714, "atom1_id": "///C/20/N", "atom2_id": "///C/20/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5693, "atom1_serNum": 60044, "atom2_serNum": 60066, "donAcc_type": "standard", "distance": 2.833, "atom1_id": "///C/21/O", "atom2_id": "///C/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5694, "atom1_serNum": 60057, "atom2_serNum": 60064, "donAcc_type": "standard", "distance": 2.503, "atom1_id": "///C/23/N", "atom2_id": "///C/23/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5695, "atom1_serNum": 60074, "atom2_serNum": 60511, "donAcc_type": "standard", "distance": 3.066, "atom1_id": "///C/25/N", "atom2_id": "///C/81/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5696, "atom1_serNum": 60112, "atom2_serNum": 60689, "donAcc_type": "acceptable", "distance": 3.951, "atom1_id": "///C/30/N", "atom2_id": "///C/103/OH", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5697, "atom1_serNum": 60119, "atom2_serNum": 60136, "donAcc_type": "standard", "distance": 3.360, "atom1_id": "///C/30/OE1", "atom2_id": "///C/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5698, "atom1_serNum": 60133, "atom2_serNum": 60135, "donAcc_type": "acceptable", "distance": 2.977, "atom1_id": "///C/32/O", "atom2_id": "///C/32/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5699, "atom1_serNum": 60139, "atom2_serNum": 60383, "donAcc_type": "standard", "distance": 3.152, "atom1_id": "///C/33/O", "atom2_id": "///C/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5700, "atom1_serNum": 60152, "atom2_serNum": 60363, "donAcc_type": "standard", "distance": 2.780, "atom1_id": "///C/35/N", "atom2_id": "///C/62/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5701, "atom1_serNum": 60155, "atom2_serNum": 60360, "donAcc_type": "standard", "distance": 3.085, "atom1_id": "///C/35/O", "atom2_id": "///C/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5702, "atom1_serNum": 60164, "atom2_serNum": 60358, "donAcc_type": "standard", "distance": 3.601, "atom1_id": "///C/37/N", "atom2_id": "///C/61/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5703, "atom1_serNum": 60172, "atom2_serNum": 60178, "donAcc_type": "acceptable", "distance": 3.125, "atom1_id": "///C/38/N", "atom2_id": "///C/38/ND1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 5704, "atom1_serNum": 60207, "atom2_serNum": 60265, "donAcc_type": "standard", "distance": 3.374, "atom1_id": "///C/42/O", "atom2_id": "///C/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5705, "atom1_serNum": 60219, "atom2_serNum": 60251, "donAcc_type": "standard", "distance": 3.495, "atom1_id": "///C/44/N", "atom2_id": "///C/48/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5706, "atom1_serNum": 60222, "atom2_serNum": 60244, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///C/44/O", "atom2_id": "///C/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5707, "atom1_serNum": 60225, "atom2_serNum": 60235, "donAcc_type": "standard", "distance": 2.608, "atom1_id": "///C/44/OD1", "atom2_id": "///C/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5708, "atom1_serNum": 60225, "atom2_serNum": 60244, "donAcc_type": "standard", "distance": 2.980, "atom1_id": "///C/44/OD1", "atom2_id": "///C/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5709, "atom1_serNum": 60226, "atom2_serNum": 60242, "donAcc_type": "standard", "distance": 3.068, "atom1_id": "///C/44/ND2", "atom2_id": "///C/46/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5710, "atom1_serNum": 60227, "atom2_serNum": 60233, "donAcc_type": "standard", "distance": 2.668, "atom1_id": "///C/45/N", "atom2_id": "///C/45/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5711, "atom1_serNum": 60233, "atom2_serNum": 60235, "donAcc_type": "standard", "distance": 2.696, "atom1_id": "///C/45/OD1", "atom2_id": "///C/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5712, "atom1_serNum": 60251, "atom2_serNum": 60265, "donAcc_type": "standard", "distance": 3.200, "atom1_id": "///C/48/O", "atom2_id": "///C/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5713, "atom1_serNum": 60321, "atom2_serNum": 61472, "donAcc_type": "standard", "distance": 3.380, "atom1_id": "///C/58/N", "atom2_id": "///C/213/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5714, "atom1_serNum": 60327, "atom2_serNum": 60334, "donAcc_type": "acceptable", "distance": 2.856, "atom1_id": "///C/58/ND1", "atom2_id": "///C/59/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5715, "atom1_serNum": 60354, "atom2_serNum": 60381, "donAcc_type": "standard", "distance": 2.735, "atom1_id": "///C/61/O", "atom2_id": "///C/63/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5716, "atom1_serNum": 60354, "atom2_serNum": 60558, "donAcc_type": "standard", "distance": 3.504, "atom1_id": "///C/61/O", "atom2_id": "///C/86/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5717, "atom1_serNum": 60358, "atom2_serNum": 60360, "donAcc_type": "standard", "distance": 3.217, "atom1_id": "///C/61/OE1", "atom2_id": "///C/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5718, "atom1_serNum": 60398, "atom2_serNum": 60681, "donAcc_type": "standard", "distance": 2.790, "atom1_id": "///C/66/N", "atom2_id": "///C/103/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5719, "atom1_serNum": 60401, "atom2_serNum": 60430, "donAcc_type": "standard", "distance": 3.718, "atom1_id": "///C/66/O", "atom2_id": "///C/69/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5720, "atom1_serNum": 60422, "atom2_serNum": 61019, "donAcc_type": "standard", "distance": 2.744, "atom1_id": "///C/68/NZ", "atom2_id": "///C/149/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5721, "atom1_serNum": 60432, "atom2_serNum": 60857, "donAcc_type": "standard", "distance": 3.955, "atom1_id": "///C/69/NH1", "atom2_id": "///C/127/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5722, "atom1_serNum": 60437, "atom2_serNum": 60447, "donAcc_type": "standard", "distance": 2.842, "atom1_id": "///C/70/O", "atom2_id": "///C/72/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5723, "atom1_serNum": 60445, "atom2_serNum": 60796, "donAcc_type": "acceptable", "distance": 2.500, "atom1_id": "///C/71/O", "atom2_id": "///C/118/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5724, "atom1_serNum": 60447, "atom2_serNum": 60453, "donAcc_type": "standard", "distance": 2.660, "atom1_id": "///C/72/N", "atom2_id": "///C/72/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5725, "atom1_serNum": 60455, "atom2_serNum": 60796, "donAcc_type": "acceptable", "distance": 3.396, "atom1_id": "///C/73/N", "atom2_id": "///C/118/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5726, "atom1_serNum": 60470, "atom2_serNum": 60632, "donAcc_type": "standard", "distance": 3.678, "atom1_id": "///C/75/O", "atom2_id": "///C/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5727, "atom1_serNum": 60474, "atom2_serNum": 60773, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///C/76/N", "atom2_id": "///C/115/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5728, "atom1_serNum": 60474, "atom2_serNum": 60778, "donAcc_type": "standard", "distance": 2.992, "atom1_id": "///C/76/N", "atom2_id": "///C/116/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5729, "atom1_serNum": 60477, "atom2_serNum": 60775, "donAcc_type": "standard", "distance": 2.785, "atom1_id": "///C/76/O", "atom2_id": "///C/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5730, "atom1_serNum": 60478, "atom2_serNum": 60615, "donAcc_type": "standard", "distance": 2.964, "atom1_id": "///C/77/N", "atom2_id": "///C/95/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5731, "atom1_serNum": 60481, "atom2_serNum": 60612, "donAcc_type": "standard", "distance": 2.846, "atom1_id": "///C/77/O", "atom2_id": "///C/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5732, "atom1_serNum": 60485, "atom2_serNum": 60758, "donAcc_type": "standard", "distance": 3.693, "atom1_id": "///C/77/NE", "atom2_id": "///C/113/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5733, "atom1_serNum": 60489, "atom2_serNum": 60762, "donAcc_type": "standard", "distance": 3.277, "atom1_id": "///C/78/N", "atom2_id": "///C/114/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5734, "atom1_serNum": 60492, "atom2_serNum": 60755, "donAcc_type": "standard", "distance": 3.163, "atom1_id": "///C/78/O", "atom2_id": "///C/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5735, "atom1_serNum": 60496, "atom2_serNum": 60599, "donAcc_type": "standard", "distance": 3.150, "atom1_id": "///C/79/N", "atom2_id": "///C/93/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5736, "atom1_serNum": 60504, "atom2_serNum": 60596, "donAcc_type": "standard", "distance": 3.325, "atom1_id": "///C/80/O", "atom2_id": "///C/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5737, "atom1_serNum": 60515, "atom2_serNum": 60586, "donAcc_type": "standard", "distance": 3.022, "atom1_id": "///C/82/N", "atom2_id": "///C/91/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5738, "atom1_serNum": 60518, "atom2_serNum": 60583, "donAcc_type": "standard", "distance": 3.562, "atom1_id": "///C/82/O", "atom2_id": "///C/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5739, "atom1_serNum": 60522, "atom2_serNum": 60689, "donAcc_type": "acceptable", "distance": 2.461, "atom1_id": "///C/82/OE1", "atom2_id": "///C/103/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5740, "atom1_serNum": 60539, "atom2_serNum": 60562, "donAcc_type": "questionable", "distance": 2.591, "atom1_id": "///C/84/O", "atom2_id": "///C/87/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5741, "atom1_serNum": 60542, "atom2_serNum": 60544, "donAcc_type": "standard", "distance": 3.026, "atom1_id": "///C/84/OD1", "atom2_id": "///C/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5742, "atom1_serNum": 60542, "atom2_serNum": 60558, "donAcc_type": "standard", "distance": 2.655, "atom1_id": "///C/84/OD1", "atom2_id": "///C/86/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5743, "atom1_serNum": 60547, "atom2_serNum": 60559, "donAcc_type": "standard", "distance": 2.646, "atom1_id": "///C/85/O", "atom2_id": "///C/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5744, "atom1_serNum": 60567, "atom2_serNum": 60569, "donAcc_type": "acceptable", "distance": 2.727, "atom1_id": "///C/88/O", "atom2_id": "///C/88/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5745, "atom1_serNum": 60578, "atom2_serNum": 60706, "donAcc_type": "standard", "distance": 3.129, "atom1_id": "///C/90/O", "atom2_id": "///C/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5746, "atom1_serNum": 60581, "atom2_serNum": 61349, "donAcc_type": "standard", "distance": 2.518, "atom1_id": "///C/90/OD1", "atom2_id": "///C/197/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5747, "atom1_serNum": 60591, "atom2_serNum": 60693, "donAcc_type": "standard", "distance": 2.967, "atom1_id": "///C/92/N", "atom2_id": "///C/104/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5748, "atom1_serNum": 60594, "atom2_serNum": 60690, "donAcc_type": "standard", "distance": 3.276, "atom1_id": "///C/92/O", "atom2_id": "///C/104/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5749, "atom1_serNum": 60604, "atom2_serNum": 60670, "donAcc_type": "standard", "distance": 3.109, "atom1_id": "///C/94/N", "atom2_id": "///C/102/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5750, "atom1_serNum": 60607, "atom2_serNum": 60667, "donAcc_type": "standard", "distance": 3.214, "atom1_id": "///C/94/O", "atom2_id": "///C/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5751, "atom1_serNum": 60620, "atom2_serNum": 60652, "donAcc_type": "standard", "distance": 2.752, "atom1_id": "///C/96/N", "atom2_id": "///C/100/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5752, "atom1_serNum": 60623, "atom2_serNum": 60645, "donAcc_type": "standard", "distance": 2.955, "atom1_id": "///C/96/O", "atom2_id": "///C/99/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5753, "atom1_serNum": 60623, "atom2_serNum": 60649, "donAcc_type": "standard", "distance": 3.466, "atom1_id": "///C/96/O", "atom2_id": "///C/100/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5754, "atom1_serNum": 60637, "atom2_serNum": 60643, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///C/98/N", "atom2_id": "///C/98/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5755, "atom1_serNum": 60657, "atom2_serNum": 60674, "donAcc_type": "standard", "distance": 3.190, "atom1_id": "///C/100/OE2", "atom2_id": "///C/102/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5756, "atom1_serNum": 60657, "atom2_serNum": 60677, "donAcc_type": "standard", "distance": 3.271, "atom1_id": "///C/100/OE2", "atom2_id": "///C/102/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5757, "atom1_serNum": 60709, "atom2_serNum": 61338, "donAcc_type": "standard", "distance": 3.715, "atom1_id": "///C/106/O", "atom2_id": "///C/196/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5758, "atom1_serNum": 60718, "atom2_serNum": 61325, "donAcc_type": "standard", "distance": 2.590, "atom1_id": "///C/108/N", "atom2_id": "///C/194/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5759, "atom1_serNum": 60730, "atom2_serNum": 60746, "donAcc_type": "questionable", "distance": 2.860, "atom1_id": "///C/109/O", "atom2_id": "///C/111/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5760, "atom1_serNum": 60739, "atom2_serNum": 60746, "donAcc_type": "standard", "distance": 2.561, "atom1_id": "///C/111/N", "atom2_id": "///C/111/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5761, "atom1_serNum": 60773, "atom2_serNum": 60775, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///C/115/OE1", "atom2_id": "///C/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5762, "atom1_serNum": 60783, "atom2_serNum": 60864, "donAcc_type": "standard", "distance": 3.068, "atom1_id": "///C/117/N", "atom2_id": "///C/128/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5763, "atom1_serNum": 60786, "atom2_serNum": 60866, "donAcc_type": "standard", "distance": 3.710, "atom1_id": "///C/117/O", "atom2_id": "///C/129/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5764, "atom1_serNum": 60794, "atom2_serNum": 61297, "donAcc_type": "standard", "distance": 3.083, "atom1_id": "///C/118/O", "atom2_id": "///C/189/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5765, "atom1_serNum": 60825, "atom2_serNum": 60838, "donAcc_type": "standard", "distance": 2.993, "atom1_id": "///C/123/O", "atom2_id": "///C/125/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5766, "atom1_serNum": 60825, "atom2_serNum": 60865, "donAcc_type": "standard", "distance": 2.715, "atom1_id": "///C/123/O", "atom2_id": "///C/128/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5767, "atom1_serNum": 60841, "atom2_serNum": 60854, "donAcc_type": "standard", "distance": 3.052, "atom1_id": "///C/125/O", "atom2_id": "///C/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5768, "atom1_serNum": 60841, "atom2_serNum": 60858, "donAcc_type": "standard", "distance": 3.215, "atom1_id": "///C/125/O", "atom2_id": "///C/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5769, "atom1_serNum": 60854, "atom2_serNum": 61313, "donAcc_type": "standard", "distance": 3.292, "atom1_id": "///C/127/N", "atom2_id": "///C/192/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5770, "atom1_serNum": 60861, "atom2_serNum": 61310, "donAcc_type": "standard", "distance": 2.855, "atom1_id": "///C/128/O", "atom2_id": "///C/192/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5771, "atom1_serNum": 60871, "atom2_serNum": 61302, "donAcc_type": "standard", "distance": 3.021, "atom1_id": "///C/130/N", "atom2_id": "///C/190/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5772, "atom1_serNum": 60874, "atom2_serNum": 61299, "donAcc_type": "standard", "distance": 3.032, "atom1_id": "///C/130/O", "atom2_id": "///C/190/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5773, "atom1_serNum": 60882, "atom2_serNum": 60902, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///C/131/O", "atom2_id": "///C/134/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5774, "atom1_serNum": 60886, "atom2_serNum": 61285, "donAcc_type": "standard", "distance": 3.077, "atom1_id": "///C/132/N", "atom2_id": "///C/188/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5775, "atom1_serNum": 60889, "atom2_serNum": 61137, "donAcc_type": "standard", "distance": 3.236, "atom1_id": "///C/132/O", "atom2_id": "///C/167/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5776, "atom1_serNum": 60897, "atom2_serNum": 61137, "donAcc_type": "standard", "distance": 2.762, "atom1_id": "///C/133/O", "atom2_id": "///C/167/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5777, "atom1_serNum": 60913, "atom2_serNum": 61137, "donAcc_type": "standard", "distance": 3.981, "atom1_id": "///C/135/O", "atom2_id": "///C/167/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5778, "atom1_serNum": 60921, "atom2_serNum": 60941, "donAcc_type": "acceptable", "distance": 3.673, "atom1_id": "///C/136/O", "atom2_id": "///C/139/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5779, "atom1_serNum": 60932, "atom2_serNum": 61113, "donAcc_type": "standard", "distance": 3.396, "atom1_id": "///C/138/N", "atom2_id": "///C/164/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5780, "atom1_serNum": 60939, "atom2_serNum": 61110, "donAcc_type": "standard", "distance": 3.426, "atom1_id": "///C/139/O", "atom2_id": "///C/164/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5781, "atom1_serNum": 60946, "atom2_serNum": 61318, "donAcc_type": "standard", "distance": 3.727, "atom1_id": "///C/140/O", "atom2_id": "///C/193/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5782, "atom1_serNum": 60957, "atom2_serNum": 61307, "donAcc_type": "standard", "distance": 2.599, "atom1_id": "///C/142/N", "atom2_id": "///C/191/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5783, "atom1_serNum": 60960, "atom2_serNum": 61053, "donAcc_type": "questionable", "distance": 3.031, "atom1_id": "///C/142/O", "atom2_id": "///C/155/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5784, "atom1_serNum": 60963, "atom2_serNum": 61309, "donAcc_type": "acceptable", "distance": 3.308, "atom1_id": "///C/142/ND1", "atom2_id": "///C/191/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5785, "atom1_serNum": 60975, "atom2_serNum": 61045, "donAcc_type": "standard", "distance": 3.311, "atom1_id": "///C/144/N", "atom2_id": "///C/154/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5786, "atom1_serNum": 60978, "atom2_serNum": 61033, "donAcc_type": "standard", "distance": 2.566, "atom1_id": "///C/144/O", "atom2_id": "///C/153/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5787, "atom1_serNum": 60978, "atom2_serNum": 61042, "donAcc_type": "standard", "distance": 3.144, "atom1_id": "///C/144/O", "atom2_id": "///C/154/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5788, "atom1_serNum": 60983, "atom2_serNum": 61291, "donAcc_type": "standard", "distance": 3.709, "atom1_id": "///C/145/N", "atom2_id": "///C/189/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5789, "atom1_serNum": 60990, "atom2_serNum": 61288, "donAcc_type": "standard", "distance": 3.501, "atom1_id": "///C/145/OE1", "atom2_id": "///C/189/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5790, "atom1_serNum": 60991, "atom2_serNum": 61025, "donAcc_type": "standard", "distance": 2.750, "atom1_id": "///C/145/OE2", "atom2_id": "///C/151/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5791, "atom1_serNum": 61003, "atom2_serNum": 61020, "donAcc_type": "standard", "distance": 3.029, "atom1_id": "///C/147/O", "atom2_id": "///C/150/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5792, "atom1_serNum": 61032, "atom2_serNum": 61066, "donAcc_type": "standard", "distance": 3.078, "atom1_id": "///C/152/O", "atom2_id": "///C/156/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5793, "atom1_serNum": 61071, "atom2_serNum": 61088, "donAcc_type": "acceptable", "distance": 2.295, "atom1_id": "///C/157/O", "atom2_id": "///C/160/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5794, "atom1_serNum": 61079, "atom2_serNum": 61334, "donAcc_type": "standard", "distance": 3.191, "atom1_id": "///C/159/N", "atom2_id": "///C/195/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5795, "atom1_serNum": 61079, "atom2_serNum": 61341, "donAcc_type": "standard", "distance": 3.290, "atom1_id": "///C/159/N", "atom2_id": "///C/196/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5796, "atom1_serNum": 61086, "atom2_serNum": 61331, "donAcc_type": "standard", "distance": 3.635, "atom1_id": "///C/160/O", "atom2_id": "///C/195/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5797, "atom1_serNum": 61104, "atom2_serNum": 61183, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///C/163/O", "atom2_id": "///C/175/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5798, "atom1_serNum": 61117, "atom2_serNum": 61171, "donAcc_type": "standard", "distance": 3.071, "atom1_id": "///C/165/N", "atom2_id": "///C/173/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5799, "atom1_serNum": 61128, "atom2_serNum": 61168, "donAcc_type": "standard", "distance": 3.314, "atom1_id": "///C/166/O", "atom2_id": "///C/173/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5800, "atom1_serNum": 61138, "atom2_serNum": 61159, "donAcc_type": "standard", "distance": 3.129, "atom1_id": "///C/168/N", "atom2_id": "///C/171/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5801, "atom1_serNum": 61141, "atom2_serNum": 61151, "donAcc_type": "standard", "distance": 3.202, "atom1_id": "///C/168/O", "atom2_id": "///C/170/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5802, "atom1_serNum": 61141, "atom2_serNum": 61156, "donAcc_type": "standard", "distance": 3.325, "atom1_id": "///C/168/O", "atom2_id": "///C/171/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5803, "atom1_serNum": 61161, "atom2_serNum": 61258, "donAcc_type": "standard", "distance": 2.379, "atom1_id": "///C/172/N", "atom2_id": "///C/184/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5804, "atom1_serNum": 61164, "atom2_serNum": 61255, "donAcc_type": "standard", "distance": 2.721, "atom1_id": "///C/172/O", "atom2_id": "///C/184/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5805, "atom1_serNum": 61176, "atom2_serNum": 61239, "donAcc_type": "standard", "distance": 3.529, "atom1_id": "///C/174/N", "atom2_id": "///C/182/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5806, "atom1_serNum": 61179, "atom2_serNum": 61236, "donAcc_type": "standard", "distance": 3.303, "atom1_id": "///C/174/O", "atom2_id": "///C/182/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5807, "atom1_serNum": 61194, "atom2_serNum": 61223, "donAcc_type": "standard", "distance": 2.514, "atom1_id": "///C/176/N", "atom2_id": "///C/180/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5808, "atom1_serNum": 61197, "atom2_serNum": 61216, "donAcc_type": "standard", "distance": 3.329, "atom1_id": "///C/176/O", "atom2_id": "///C/179/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5809, "atom1_serNum": 61205, "atom2_serNum": 61215, "donAcc_type": "acceptable", "distance": 2.496, "atom1_id": "///C/177/O", "atom2_id": "///C/178/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5810, "atom1_serNum": 61208, "atom2_serNum": 61210, "donAcc_type": "standard", "distance": 2.561, "atom1_id": "///C/177/OD1", "atom2_id": "///C/178/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5811, "atom1_serNum": 61213, "atom2_serNum": 61215, "donAcc_type": "acceptable", "distance": 2.716, "atom1_id": "///C/178/O", "atom2_id": "///C/178/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5812, "atom1_serNum": 61213, "atom2_serNum": 61865, "donAcc_type": "questionable", "distance": 2.789, "atom1_id": "///C/178/O", "atom2_id": "///C/275/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5813, "atom1_serNum": 61228, "atom2_serNum": 61850, "donAcc_type": "questionable", "distance": 2.821, "atom1_id": "///C/180/OE2", "atom2_id": "///C/272/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5814, "atom1_serNum": 61232, "atom2_serNum": 61840, "donAcc_type": "standard", "distance": 3.389, "atom1_id": "///C/181/O", "atom2_id": "///C/271/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5815, "atom1_serNum": 61247, "atom2_serNum": 61824, "donAcc_type": "standard", "distance": 2.707, "atom1_id": "///C/183/N", "atom2_id": "///C/269/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5816, "atom1_serNum": 61342, "atom2_serNum": 61348, "donAcc_type": "standard", "distance": 2.707, "atom1_id": "///C/197/N", "atom2_id": "///C/197/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5817, "atom1_serNum": 61345, "atom2_serNum": 61368, "donAcc_type": "standard", "distance": 2.976, "atom1_id": "///C/197/O", "atom2_id": "///C/200/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5818, "atom1_serNum": 61350, "atom2_serNum": 61357, "donAcc_type": "standard", "distance": 2.501, "atom1_id": "///C/198/N", "atom2_id": "///C/198/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5819, "atom1_serNum": 61353, "atom2_serNum": 61385, "donAcc_type": "questionable", "distance": 2.983, "atom1_id": "///C/198/O", "atom2_id": "///C/201/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5820, "atom1_serNum": 61359, "atom2_serNum": 61366, "donAcc_type": "standard", "distance": 2.570, "atom1_id": "///C/199/N", "atom2_id": "///C/199/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5821, "atom1_serNum": 61362, "atom2_serNum": 61387, "donAcc_type": "standard", "distance": 3.035, "atom1_id": "///C/199/O", "atom2_id": "///C/202/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5822, "atom1_serNum": 61426, "atom2_serNum": 61441, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///C/207/O", "atom2_id": "///C/210/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5823, "atom1_serNum": 61435, "atom2_serNum": 61457, "donAcc_type": "acceptable", "distance": 2.284, "atom1_id": "///C/208/O", "atom2_id": "///C/211/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5824, "atom1_serNum": 61435, "atom2_serNum": 61458, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///C/208/O", "atom2_id": "///C/212/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5825, "atom1_serNum": 61440, "atom2_serNum": 61469, "donAcc_type": "standard", "distance": 2.848, "atom1_id": "///C/209/O", "atom2_id": "///C/213/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5826, "atom1_serNum": 61444, "atom2_serNum": 61483, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///C/210/O", "atom2_id": "///C/214/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5827, "atom1_serNum": 61455, "atom2_serNum": 61492, "donAcc_type": "standard", "distance": 3.174, "atom1_id": "///C/211/O", "atom2_id": "///C/215/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5828, "atom1_serNum": 61455, "atom2_serNum": 61496, "donAcc_type": "standard", "distance": 3.102, "atom1_id": "///C/211/O", "atom2_id": "///C/216/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5829, "atom1_serNum": 61461, "atom2_serNum": 61492, "donAcc_type": "standard", "distance": 3.130, "atom1_id": "///C/212/O", "atom2_id": "///C/215/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5830, "atom1_serNum": 61545, "atom2_serNum": 61556, "donAcc_type": "acceptable", "distance": 3.701, "atom1_id": "///C/221/NH1", "atom2_id": "///C/223/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5831, "atom1_serNum": 61550, "atom2_serNum": 61606, "donAcc_type": "acceptable", "distance": 2.677, "atom1_id": "///C/222/O", "atom2_id": "///C/230/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5832, "atom1_serNum": 61567, "atom2_serNum": 61630, "donAcc_type": "questionable", "distance": 2.823, "atom1_id": "///C/225/O", "atom2_id": "///C/233/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5833, "atom1_serNum": 61572, "atom2_serNum": 61592, "donAcc_type": "standard", "distance": 3.115, "atom1_id": "///C/226/O", "atom2_id": "///C/229/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5834, "atom1_serNum": 61572, "atom2_serNum": 61600, "donAcc_type": "standard", "distance": 3.290, "atom1_id": "///C/226/O", "atom2_id": "///C/230/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5835, "atom1_serNum": 61584, "atom2_serNum": 61590, "donAcc_type": "standard", "distance": 2.543, "atom1_id": "///C/228/N", "atom2_id": "///C/228/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5836, "atom1_serNum": 61603, "atom2_serNum": 61627, "donAcc_type": "standard", "distance": 2.707, "atom1_id": "///C/230/O", "atom2_id": "///C/233/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5837, "atom1_serNum": 61606, "atom2_serNum": 61617, "donAcc_type": "acceptable", "distance": 3.051, "atom1_id": "///C/230/ND1", "atom2_id": "///C/232/N", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 5838, "atom1_serNum": 61609, "atom2_serNum": 61655, "donAcc_type": "standard", "distance": 3.990, "atom1_id": "///C/230/NE2", "atom2_id": "///C/247/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5839, "atom1_serNum": 61642, "atom2_serNum": 61644, "donAcc_type": "acceptable", "distance": 2.636, "atom1_id": "///C/245/O", "atom2_id": "///C/245/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5840, "atom1_serNum": 61648, "atom2_serNum": 61705, "donAcc_type": "acceptable", "distance": 3.023, "atom1_id": "///C/246/O", "atom2_id": "///C/254/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5841, "atom1_serNum": 61657, "atom2_serNum": 61691, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///C/248/N", "atom2_id": "///C/252/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5842, "atom1_serNum": 61662, "atom2_serNum": 61673, "donAcc_type": "acceptable", "distance": 2.543, "atom1_id": "///C/248/OG", "atom2_id": "///C/250/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5843, "atom1_serNum": 61662, "atom2_serNum": 61688, "donAcc_type": "acceptable", "distance": 3.039, "atom1_id": "///C/248/OG", "atom2_id": "///C/252/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5844, "atom1_serNum": 61662, "atom2_serNum": 61691, "donAcc_type": "acceptable", "distance": 2.587, "atom1_id": "///C/248/OG", "atom2_id": "///C/252/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5845, "atom1_serNum": 61673, "atom2_serNum": 61688, "donAcc_type": "standard", "distance": 3.037, "atom1_id": "///C/250/O", "atom2_id": "///C/252/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5846, "atom1_serNum": 61703, "atom2_serNum": 61719, "donAcc_type": "standard", "distance": 3.581, "atom1_id": "///C/254/O", "atom2_id": "///C/257/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5847, "atom1_serNum": 61753, "atom2_serNum": 61810, "donAcc_type": "standard", "distance": 3.864, "atom1_id": "///C/260/NE", "atom2_id": "///C/267/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5848, "atom1_serNum": 61756, "atom2_serNum": 61803, "donAcc_type": "acceptable", "distance": 3.493, "atom1_id": "///C/260/NH2", "atom2_id": "///C/266/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5849, "atom1_serNum": 61784, "atom2_serNum": 61811, "donAcc_type": "standard", "distance": 2.742, "atom1_id": "///C/264/N", "atom2_id": "///C/267/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5850, "atom1_serNum": 61787, "atom2_serNum": 61804, "donAcc_type": "standard", "distance": 3.269, "atom1_id": "///C/264/O", "atom2_id": "///C/267/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5851, "atom1_serNum": 61801, "atom2_serNum": 61803, "donAcc_type": "acceptable", "distance": 2.814, "atom1_id": "///C/266/O", "atom2_id": "///C/266/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5852, "atom1_serNum": 61807, "atom2_serNum": 61832, "donAcc_type": "standard", "distance": 3.023, "atom1_id": "///C/267/O", "atom2_id": "///C/270/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5853, "atom1_serNum": 61855, "atom2_serNum": 61862, "donAcc_type": "standard", "distance": 2.738, "atom1_id": "///C/273/O", "atom2_id": "///C/275/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5854, "atom1_serNum": 61876, "atom2_serNum": 61878, "donAcc_type": "acceptable", "distance": 2.869, "atom1_id": "///D/2/O", "atom2_id": "///D/2/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5855, "atom1_serNum": 61883, "atom2_serNum": 63191, "donAcc_type": "standard", "distance": 3.291, "atom1_id": "///D/3/O", "atom2_id": "///D/204/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5856, "atom1_serNum": 61888, "atom2_serNum": 62612, "donAcc_type": "standard", "distance": 2.675, "atom1_id": "///D/3/NZ", "atom2_id": "///D/101/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5857, "atom1_serNum": 61893, "atom2_serNum": 63178, "donAcc_type": "standard", "distance": 3.121, "atom1_id": "///D/5/N", "atom2_id": "///D/202/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5858, "atom1_serNum": 61896, "atom2_serNum": 63175, "donAcc_type": "standard", "distance": 2.643, "atom1_id": "///D/5/O", "atom2_id": "///D/202/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5859, "atom1_serNum": 61909, "atom2_serNum": 63163, "donAcc_type": "standard", "distance": 2.723, "atom1_id": "///D/7/N", "atom2_id": "///D/200/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5860, "atom1_serNum": 61912, "atom2_serNum": 63160, "donAcc_type": "standard", "distance": 2.510, "atom1_id": "///D/7/O", "atom2_id": "///D/200/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5861, "atom1_serNum": 61913, "atom2_serNum": 62066, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///D/8/N", "atom2_id": "///D/29/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5862, "atom1_serNum": 61916, "atom2_serNum": 62063, "donAcc_type": "standard", "distance": 2.833, "atom1_id": "///D/8/O", "atom2_id": "///D/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5863, "atom1_serNum": 61924, "atom2_serNum": 63149, "donAcc_type": "standard", "distance": 3.708, "atom1_id": "///D/9/N", "atom2_id": "///D/198/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5864, "atom1_serNum": 61927, "atom2_serNum": 63137, "donAcc_type": "standard", "distance": 3.384, "atom1_id": "///D/9/O", "atom2_id": "///D/197/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5865, "atom1_serNum": 61932, "atom2_serNum": 63108, "donAcc_type": "standard", "distance": 3.249, "atom1_id": "///D/9/NZ", "atom2_id": "///D/192/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5866, "atom1_serNum": 61932, "atom2_serNum": 63122, "donAcc_type": "standard", "distance": 2.660, "atom1_id": "///D/9/NZ", "atom2_id": "///D/194/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5867, "atom1_serNum": 61933, "atom2_serNum": 62051, "donAcc_type": "standard", "distance": 3.330, "atom1_id": "///D/10/N", "atom2_id": "///D/27/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5868, "atom1_serNum": 61944, "atom2_serNum": 62048, "donAcc_type": "standard", "distance": 2.981, "atom1_id": "///D/11/O", "atom2_id": "///D/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5869, "atom1_serNum": 61953, "atom2_serNum": 62039, "donAcc_type": "standard", "distance": 3.018, "atom1_id": "///D/13/N", "atom2_id": "///D/25/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5870, "atom1_serNum": 61956, "atom2_serNum": 62036, "donAcc_type": "standard", "distance": 3.153, "atom1_id": "///D/13/O", "atom2_id": "///D/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5871, "atom1_serNum": 61965, "atom2_serNum": 62024, "donAcc_type": "standard", "distance": 3.109, "atom1_id": "///D/15/N", "atom2_id": "///D/23/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5872, "atom1_serNum": 61968, "atom2_serNum": 62021, "donAcc_type": "standard", "distance": 2.673, "atom1_id": "///D/15/O", "atom2_id": "///D/23/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5873, "atom1_serNum": 61983, "atom2_serNum": 62008, "donAcc_type": "standard", "distance": 3.069, "atom1_id": "///D/17/N", "atom2_id": "///D/21/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5874, "atom1_serNum": 61986, "atom2_serNum": 62001, "donAcc_type": "standard", "distance": 2.675, "atom1_id": "///D/17/O", "atom2_id": "///D/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5875, "atom1_serNum": 62005, "atom2_serNum": 62011, "donAcc_type": "standard", "distance": 2.720, "atom1_id": "///D/21/N", "atom2_id": "///D/21/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5876, "atom1_serNum": 62032, "atom2_serNum": 63093, "donAcc_type": "standard", "distance": 2.768, "atom1_id": "///D/24/O", "atom2_id": "///D/190/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5877, "atom1_serNum": 62041, "atom2_serNum": 63083, "donAcc_type": "standard", "distance": 3.029, "atom1_id": "///D/26/N", "atom2_id": "///D/188/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5878, "atom1_serNum": 62044, "atom2_serNum": 63080, "donAcc_type": "standard", "distance": 3.206, "atom1_id": "///D/26/O", "atom2_id": "///D/188/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5879, "atom1_serNum": 62046, "atom2_serNum": 63096, "donAcc_type": "acceptable", "distance": 2.436, "atom1_id": "///D/26/OG1", "atom2_id": "///D/190/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5880, "atom1_serNum": 62055, "atom2_serNum": 63067, "donAcc_type": "standard", "distance": 3.043, "atom1_id": "///D/28/N", "atom2_id": "///D/186/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5881, "atom1_serNum": 62058, "atom2_serNum": 63064, "donAcc_type": "standard", "distance": 3.042, "atom1_id": "///D/28/O", "atom2_id": "///D/186/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5882, "atom1_serNum": 62072, "atom2_serNum": 63051, "donAcc_type": "standard", "distance": 3.158, "atom1_id": "///D/30/N", "atom2_id": "///D/184/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5883, "atom1_serNum": 62080, "atom2_serNum": 62095, "donAcc_type": "questionable", "distance": 2.849, "atom1_id": "///D/31/O", "atom2_id": "///D/33/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5884, "atom1_serNum": 62089, "atom2_serNum": 62580, "donAcc_type": "standard", "distance": 3.466, "atom1_id": "///D/33/N", "atom2_id": "///D/97/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5885, "atom1_serNum": 62092, "atom2_serNum": 62577, "donAcc_type": "standard", "distance": 3.003, "atom1_id": "///D/33/O", "atom2_id": "///D/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5886, "atom1_serNum": 62097, "atom2_serNum": 62241, "donAcc_type": "standard", "distance": 3.428, "atom1_id": "///D/34/N", "atom2_id": "///D/52/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5887, "atom1_serNum": 62100, "atom2_serNum": 62238, "donAcc_type": "standard", "distance": 3.104, "atom1_id": "///D/34/O", "atom2_id": "///D/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5888, "atom1_serNum": 62104, "atom2_serNum": 62562, "donAcc_type": "standard", "distance": 3.073, "atom1_id": "///D/35/N", "atom2_id": "///D/95/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5889, "atom1_serNum": 62107, "atom2_serNum": 62555, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///D/35/O", "atom2_id": "///D/94/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5890, "atom1_serNum": 62111, "atom2_serNum": 62224, "donAcc_type": "standard", "distance": 2.852, "atom1_id": "///D/36/N", "atom2_id": "///D/50/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5891, "atom1_serNum": 62122, "atom2_serNum": 62221, "donAcc_type": "standard", "distance": 3.451, "atom1_id": "///D/37/O", "atom2_id": "///D/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5892, "atom1_serNum": 62126, "atom2_serNum": 62229, "donAcc_type": "standard", "distance": 3.423, "atom1_id": "///D/37/OE1", "atom2_id": "///D/50/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5893, "atom1_serNum": 62136, "atom2_serNum": 62509, "donAcc_type": "standard", "distance": 3.152, "atom1_id": "///D/38/NZ", "atom2_id": "///D/88/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5894, "atom1_serNum": 62137, "atom2_serNum": 62211, "donAcc_type": "standard", "distance": 3.465, "atom1_id": "///D/39/N", "atom2_id": "///D/48/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5895, "atom1_serNum": 62149, "atom2_serNum": 62167, "donAcc_type": "standard", "distance": 3.103, "atom1_id": "///D/40/O", "atom2_id": "///D/43/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5896, "atom1_serNum": 62149, "atom2_serNum": 62175, "donAcc_type": "standard", "distance": 2.539, "atom1_id": "///D/40/O", "atom2_id": "///D/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5897, "atom1_serNum": 62149, "atom2_serNum": 62183, "donAcc_type": "standard", "distance": 3.280, "atom1_id": "///D/40/O", "atom2_id": "///D/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5898, "atom1_serNum": 62151, "atom2_serNum": 62165, "donAcc_type": "acceptable", "distance": 2.469, "atom1_id": "///D/40/OG1", "atom2_id": "///D/42/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5899, "atom1_serNum": 62156, "atom2_serNum": 62183, "donAcc_type": "standard", "distance": 2.795, "atom1_id": "///D/41/O", "atom2_id": "///D/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5900, "atom1_serNum": 62158, "atom2_serNum": 62165, "donAcc_type": "standard", "distance": 2.718, "atom1_id": "///D/42/N", "atom2_id": "///D/42/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5901, "atom1_serNum": 62213, "atom2_serNum": 62476, "donAcc_type": "standard", "distance": 3.010, "atom1_id": "///D/49/N", "atom2_id": "///D/83/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5902, "atom1_serNum": 62216, "atom2_serNum": 62473, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///D/49/O", "atom2_id": "///D/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5903, "atom1_serNum": 62230, "atom2_serNum": 62462, "donAcc_type": "standard", "distance": 3.365, "atom1_id": "///D/51/N", "atom2_id": "///D/81/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5904, "atom1_serNum": 62233, "atom2_serNum": 62459, "donAcc_type": "standard", "distance": 3.585, "atom1_id": "///D/51/O", "atom2_id": "///D/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5905, "atom1_serNum": 62242, "atom2_serNum": 62444, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///D/53/N", "atom2_id": "///D/79/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5906, "atom1_serNum": 62256, "atom2_serNum": 62436, "donAcc_type": "standard", "distance": 2.576, "atom1_id": "///D/54/O", "atom2_id": "///D/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5907, "atom1_serNum": 62267, "atom2_serNum": 62435, "donAcc_type": "standard", "distance": 2.645, "atom1_id": "///D/55/OD1", "atom2_id": "///D/77/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5908, "atom1_serNum": 62269, "atom2_serNum": 62423, "donAcc_type": "standard", "distance": 3.669, "atom1_id": "///D/56/N", "atom2_id": "///D/76/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5909, "atom1_serNum": 62324, "atom2_serNum": 62345, "donAcc_type": "standard", "distance": 2.855, "atom1_id": "///D/62/O", "atom2_id": "///D/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5910, "atom1_serNum": 62324, "atom2_serNum": 62354, "donAcc_type": "standard", "distance": 3.342, "atom1_id": "///D/62/O", "atom2_id": "///D/66/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5911, "atom1_serNum": 62332, "atom2_serNum": 62359, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///D/63/O", "atom2_id": "///D/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5912, "atom1_serNum": 62341, "atom2_serNum": 62363, "donAcc_type": "standard", "distance": 2.988, "atom1_id": "///D/64/O", "atom2_id": "///D/68/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5913, "atom1_serNum": 62348, "atom2_serNum": 62363, "donAcc_type": "standard", "distance": 3.050, "atom1_id": "///D/65/O", "atom2_id": "///D/68/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5914, "atom1_serNum": 62348, "atom2_serNum": 62373, "donAcc_type": "standard", "distance": 3.153, "atom1_id": "///D/65/O", "atom2_id": "///D/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5915, "atom1_serNum": 62357, "atom2_serNum": 62373, "donAcc_type": "standard", "distance": 2.758, "atom1_id": "///D/66/O", "atom2_id": "///D/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5916, "atom1_serNum": 62366, "atom2_serNum": 62380, "donAcc_type": "standard", "distance": 3.063, "atom1_id": "///D/68/O", "atom2_id": "///D/70/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5917, "atom1_serNum": 62497, "atom2_serNum": 62504, "donAcc_type": "standard", "distance": 2.643, "atom1_id": "///D/87/N", "atom2_id": "///D/87/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5918, "atom1_serNum": 62520, "atom2_serNum": 62522, "donAcc_type": "standard", "distance": 2.768, "atom1_id": "///D/89/OD1", "atom2_id": "///D/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5919, "atom1_serNum": 62525, "atom2_serNum": 62566, "donAcc_type": "questionable", "distance": 3.303, "atom1_id": "///D/90/O", "atom2_id": "///D/95/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5920, "atom1_serNum": 62542, "atom2_serNum": 62559, "donAcc_type": "standard", "distance": 2.963, "atom1_id": "///D/92/O", "atom2_id": "///D/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5921, "atom1_serNum": 62547, "atom2_serNum": 62548, "donAcc_type": "standard", "distance": 2.567, "atom1_id": "///D/92/OE2", "atom2_id": "///D/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5922, "atom1_serNum": 62587, "atom2_serNum": 62609, "donAcc_type": "standard", "distance": 3.778, "atom1_id": "///D/98/O", "atom2_id": "///D/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5923, "atom1_serNum": 62596, "atom2_serNum": 62617, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///D/99/O", "atom2_id": "///D/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5924, "atom1_serNum": 62646, "atom2_serNum": 62984, "donAcc_type": "standard", "distance": 3.174, "atom1_id": "///D/106/O", "atom2_id": "///D/176/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5925, "atom1_serNum": 62650, "atom2_serNum": 62655, "donAcc_type": "questionable", "distance": 2.998, "atom1_id": "///D/106/OE1", "atom2_id": "///D/107/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5926, "atom1_serNum": 62655, "atom2_serNum": 63197, "donAcc_type": "standard", "distance": 3.409, "atom1_id": "///D/107/O", "atom2_id": "///D/205/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5927, "atom1_serNum": 62660, "atom2_serNum": 62970, "donAcc_type": "standard", "distance": 2.779, "atom1_id": "///D/108/N", "atom2_id": "///D/174/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5928, "atom1_serNum": 62663, "atom2_serNum": 62967, "donAcc_type": "standard", "distance": 3.323, "atom1_id": "///D/108/O", "atom2_id": "///D/174/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5929, "atom1_serNum": 62667, "atom2_serNum": 63185, "donAcc_type": "standard", "distance": 2.673, "atom1_id": "///D/109/N", "atom2_id": "///D/203/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5930, "atom1_serNum": 62670, "atom2_serNum": 63182, "donAcc_type": "standard", "distance": 2.967, "atom1_id": "///D/109/O", "atom2_id": "///D/203/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5931, "atom1_serNum": 62673, "atom2_serNum": 63202, "donAcc_type": "standard", "distance": 3.211, "atom1_id": "///D/109/OD1", "atom2_id": "///D/206/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5932, "atom1_serNum": 62674, "atom2_serNum": 62962, "donAcc_type": "standard", "distance": 3.747, "atom1_id": "///D/109/OD2", "atom2_id": "///D/173/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5933, "atom1_serNum": 62675, "atom2_serNum": 62949, "donAcc_type": "standard", "distance": 3.279, "atom1_id": "///D/110/N", "atom2_id": "///D/171/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5934, "atom1_serNum": 62678, "atom2_serNum": 62946, "donAcc_type": "standard", "distance": 2.748, "atom1_id": "///D/110/O", "atom2_id": "///D/171/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5935, "atom1_serNum": 62685, "atom2_serNum": 63168, "donAcc_type": "standard", "distance": 3.633, "atom1_id": "///D/111/O", "atom2_id": "///D/201/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5936, "atom1_serNum": 62689, "atom2_serNum": 62934, "donAcc_type": "standard", "distance": 2.800, "atom1_id": "///D/112/N", "atom2_id": "///D/169/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5937, "atom1_serNum": 62692, "atom2_serNum": 62931, "donAcc_type": "standard", "distance": 2.652, "atom1_id": "///D/112/O", "atom2_id": "///D/169/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5938, "atom1_serNum": 62700, "atom2_serNum": 62916, "donAcc_type": "standard", "distance": 3.174, "atom1_id": "///D/114/N", "atom2_id": "///D/167/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5939, "atom1_serNum": 62705, "atom2_serNum": 62909, "donAcc_type": "acceptable", "distance": 2.721, "atom1_id": "///D/114/OG", "atom2_id": "///D/166/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5940, "atom1_serNum": 62705, "atom2_serNum": 62913, "donAcc_type": "acceptable", "distance": 3.514, "atom1_id": "///D/114/OG", "atom2_id": "///D/167/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5941, "atom1_serNum": 62719, "atom2_serNum": 62900, "donAcc_type": "standard", "distance": 3.358, "atom1_id": "///D/117/N", "atom2_id": "///D/164/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5942, "atom1_serNum": 62722, "atom2_serNum": 62750, "donAcc_type": "questionable", "distance": 2.889, "atom1_id": "///D/117/O", "atom2_id": "///D/120/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5943, "atom1_serNum": 62731, "atom2_serNum": 62897, "donAcc_type": "standard", "distance": 3.458, "atom1_id": "///D/118/O", "atom2_id": "///D/164/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5944, "atom1_serNum": 62743, "atom2_serNum": 62885, "donAcc_type": "standard", "distance": 3.226, "atom1_id": "///D/120/N", "atom2_id": "///D/162/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5945, "atom1_serNum": 62746, "atom2_serNum": 62882, "donAcc_type": "standard", "distance": 3.015, "atom1_id": "///D/120/O", "atom2_id": "///D/162/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5946, "atom1_serNum": 62755, "atom2_serNum": 62778, "donAcc_type": "standard", "distance": 2.725, "atom1_id": "///D/121/O", "atom2_id": "///D/125/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5947, "atom1_serNum": 62759, "atom2_serNum": 62789, "donAcc_type": "standard", "distance": 2.840, "atom1_id": "///D/122/O", "atom2_id": "///D/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5948, "atom1_serNum": 62759, "atom2_serNum": 62794, "donAcc_type": "standard", "distance": 3.181, "atom1_id": "///D/122/O", "atom2_id": "///D/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5949, "atom1_serNum": 62764, "atom2_serNum": 62794, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///D/123/O", "atom2_id": "///D/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5950, "atom1_serNum": 62764, "atom2_serNum": 62798, "donAcc_type": "standard", "distance": 3.025, "atom1_id": "///D/123/O", "atom2_id": "///D/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5951, "atom1_serNum": 62787, "atom2_serNum": 62870, "donAcc_type": "standard", "distance": 2.586, "atom1_id": "///D/125/NH1", "atom2_id": "///D/160/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5952, "atom1_serNum": 62885, "atom2_serNum": 62897, "donAcc_type": "standard", "distance": 3.241, "atom1_id": "///D/162/O", "atom2_id": "///D/164/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5953, "atom1_serNum": 62905, "atom2_serNum": 62921, "donAcc_type": "standard", "distance": 2.972, "atom1_id": "///D/165/N", "atom2_id": "///D/167/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5954, "atom1_serNum": 62916, "atom2_serNum": 62931, "donAcc_type": "standard", "distance": 3.423, "atom1_id": "///D/167/O", "atom2_id": "///D/169/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5955, "atom1_serNum": 62944, "atom2_serNum": 62960, "donAcc_type": "acceptable", "distance": 2.878, "atom1_id": "///D/170/OG1", "atom2_id": "///D/172/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5956, "atom1_serNum": 62978, "atom2_serNum": 63088, "donAcc_type": "standard", "distance": 3.212, "atom1_id": "///D/175/O", "atom2_id": "///D/189/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5957, "atom1_serNum": 62992, "atom2_serNum": 63075, "donAcc_type": "standard", "distance": 3.439, "atom1_id": "///D/177/N", "atom2_id": "///D/187/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5958, "atom1_serNum": 63002, "atom2_serNum": 63072, "donAcc_type": "standard", "distance": 3.178, "atom1_id": "///D/178/O", "atom2_id": "///D/187/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5959, "atom1_serNum": 63015, "atom2_serNum": 63059, "donAcc_type": "standard", "distance": 2.658, "atom1_id": "///D/180/N", "atom2_id": "///D/185/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5960, "atom1_serNum": 63018, "atom2_serNum": 63048, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///D/180/O", "atom2_id": "///D/184/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5961, "atom1_serNum": 63018, "atom2_serNum": 63056, "donAcc_type": "standard", "distance": 2.811, "atom1_id": "///D/180/O", "atom2_id": "///D/185/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5962, "atom1_serNum": 63022, "atom2_serNum": 63037, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///D/180/OD2", "atom2_id": "///D/183/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5963, "atom1_serNum": 63022, "atom2_serNum": 63044, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///D/180/OD2", "atom2_id": "///D/183/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5964, "atom1_serNum": 63026, "atom2_serNum": 63054, "donAcc_type": "questionable", "distance": 3.113, "atom1_id": "///D/181/O", "atom2_id": "///D/184/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5965, "atom1_serNum": 63083, "atom2_serNum": 63093, "donAcc_type": "standard", "distance": 3.015, "atom1_id": "///D/188/O", "atom2_id": "///D/190/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5966, "atom1_serNum": 63097, "atom2_serNum": 63103, "donAcc_type": "standard", "distance": 2.754, "atom1_id": "///D/191/N", "atom2_id": "///D/191/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5967, "atom1_serNum": 63149, "atom2_serNum": 63160, "donAcc_type": "standard", "distance": 3.373, "atom1_id": "///D/198/O", "atom2_id": "///D/200/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5968, "atom1_serNum": 63194, "atom2_serNum": 63202, "donAcc_type": "standard", "distance": 3.072, "atom1_id": "///D/204/O", "atom2_id": "///D/206/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5969, "atom1_serNum": 63205, "atom2_serNum": 63218, "donAcc_type": "standard", "distance": 2.825, "atom1_id": "///D/206/O", "atom2_id": "///D/208/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5970, "atom1_serNum": 63240, "atom2_serNum": 63326, "donAcc_type": "questionable", "distance": 2.842, "atom1_id": "///E/4/O", "atom2_id": "///E/16/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5971, "atom1_serNum": 63240, "atom2_serNum": 63328, "donAcc_type": "standard", "distance": 2.728, "atom1_id": "///E/4/O", "atom2_id": "///E/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5972, "atom1_serNum": 63252, "atom2_serNum": 63307, "donAcc_type": "questionable", "distance": 2.933, "atom1_id": "///E/6/O", "atom2_id": "///E/13/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5973, "atom1_serNum": 63260, "atom2_serNum": 64148, "donAcc_type": "standard", "distance": 3.289, "atom1_id": "///E/7/O", "atom2_id": "///E/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5974, "atom1_serNum": 63272, "atom2_serNum": 63294, "donAcc_type": "standard", "distance": 2.722, "atom1_id": "///E/8/O", "atom2_id": "///E/11/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5975, "atom1_serNum": 63284, "atom2_serNum": 64160, "donAcc_type": "questionable", "distance": 3.090, "atom1_id": "///E/9/OE1", "atom2_id": "///E/128/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5976, "atom1_serNum": 63284, "atom2_serNum": 64173, "donAcc_type": "standard", "distance": 3.002, "atom1_id": "///E/9/OE1", "atom2_id": "///E/130/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5977, "atom1_serNum": 63285, "atom2_serNum": 64178, "donAcc_type": "acceptable", "distance": 3.134, "atom1_id": "///E/9/NE2", "atom2_id": "///E/130/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5978, "atom1_serNum": 63297, "atom2_serNum": 63303, "donAcc_type": "acceptable", "distance": 2.574, "atom1_id": "///E/11/O", "atom2_id": "///E/12/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5979, "atom1_serNum": 63301, "atom2_serNum": 63303, "donAcc_type": "acceptable", "distance": 2.645, "atom1_id": "///E/12/O", "atom2_id": "///E/12/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5980, "atom1_serNum": 63356, "atom2_serNum": 63379, "donAcc_type": "standard", "distance": 2.625, "atom1_id": "///E/20/O", "atom2_id": "///E/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5981, "atom1_serNum": 63359, "atom2_serNum": 63371, "donAcc_type": "acceptable", "distance": 2.529, "atom1_id": "///E/20/OD1", "atom2_id": "///E/22/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5982, "atom1_serNum": 63364, "atom2_serNum": 63390, "donAcc_type": "standard", "distance": 2.641, "atom1_id": "///E/21/O", "atom2_id": "///E/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5983, "atom1_serNum": 63397, "atom2_serNum": 63411, "donAcc_type": "standard", "distance": 3.018, "atom1_id": "///E/26/O", "atom2_id": "///E/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5984, "atom1_serNum": 63397, "atom2_serNum": 64066, "donAcc_type": "acceptable", "distance": 3.058, "atom1_id": "///E/26/O", "atom2_id": "///E/115/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5985, "atom1_serNum": 63418, "atom2_serNum": 64045, "donAcc_type": "acceptable", "distance": 3.274, "atom1_id": "///E/29/N", "atom2_id": "///E/112/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 5986, "atom1_serNum": 63421, "atom2_serNum": 63448, "donAcc_type": "standard", "distance": 3.553, "atom1_id": "///E/29/O", "atom2_id": "///E/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5987, "atom1_serNum": 63424, "atom2_serNum": 63435, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///E/29/OD1", "atom2_id": "///E/31/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5988, "atom1_serNum": 63424, "atom2_serNum": 63441, "donAcc_type": "standard", "distance": 3.247, "atom1_id": "///E/29/OD1", "atom2_id": "///E/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5989, "atom1_serNum": 63429, "atom2_serNum": 63455, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///E/30/O", "atom2_id": "///E/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5990, "atom1_serNum": 63438, "atom2_serNum": 63466, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///E/31/O", "atom2_id": "///E/35/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5991, "atom1_serNum": 63440, "atom2_serNum": 67270, "donAcc_type": "acceptable", "distance": 3.204, "atom1_id": "///E/31/OG", "atom2_id": "///I/9/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 5992, "atom1_serNum": 63444, "atom2_serNum": 63474, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///E/32/O", "atom2_id": "///E/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5993, "atom1_serNum": 63451, "atom2_serNum": 63479, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///E/33/O", "atom2_id": "///E/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5994, "atom1_serNum": 63458, "atom2_serNum": 63487, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///E/34/O", "atom2_id": "///E/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5995, "atom1_serNum": 63469, "atom2_serNum": 63495, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///E/35/O", "atom2_id": "///E/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5996, "atom1_serNum": 63477, "atom2_serNum": 63503, "donAcc_type": "standard", "distance": 2.943, "atom1_id": "///E/36/O", "atom2_id": "///E/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5997, "atom1_serNum": 63482, "atom2_serNum": 63512, "donAcc_type": "standard", "distance": 3.339, "atom1_id": "///E/37/O", "atom2_id": "///E/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5998, "atom1_serNum": 63490, "atom2_serNum": 63523, "donAcc_type": "standard", "distance": 3.084, "atom1_id": "///E/38/O", "atom2_id": "///E/42/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 5999, "atom1_serNum": 63498, "atom2_serNum": 63528, "donAcc_type": "standard", "distance": 2.990, "atom1_id": "///E/39/O", "atom2_id": "///E/43/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6000, "atom1_serNum": 63506, "atom2_serNum": 63528, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///E/40/O", "atom2_id": "///E/43/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6001, "atom1_serNum": 63506, "atom2_serNum": 63533, "donAcc_type": "acceptable", "distance": 2.681, "atom1_id": "///E/40/O", "atom2_id": "///E/43/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6002, "atom1_serNum": 63515, "atom2_serNum": 63542, "donAcc_type": "standard", "distance": 3.811, "atom1_id": "///E/41/O", "atom2_id": "///E/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6003, "atom1_serNum": 63531, "atom2_serNum": 63533, "donAcc_type": "acceptable", "distance": 2.766, "atom1_id": "///E/43/O", "atom2_id": "///E/43/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6004, "atom1_serNum": 63576, "atom2_serNum": 63579, "donAcc_type": "acceptable", "distance": 3.063, "atom1_id": "///E/49/O", "atom2_id": "///E/49/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6005, "atom1_serNum": 63602, "atom2_serNum": 63852, "donAcc_type": "standard", "distance": 3.608, "atom1_id": "///E/52/O", "atom2_id": "///E/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6006, "atom1_serNum": 63608, "atom2_serNum": 63640, "donAcc_type": "standard", "distance": 2.516, "atom1_id": "///E/53/N", "atom2_id": "///E/56/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6007, "atom1_serNum": 63636, "atom2_serNum": 63649, "donAcc_type": "standard", "distance": 3.161, "atom1_id": "///E/56/O", "atom2_id": "///E/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6008, "atom1_serNum": 63659, "atom2_serNum": 75833, "donAcc_type": "questionable", "distance": 2.961, "atom1_id": "///E/58/NH2", "atom2_id": "///U/37/NZ", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6009, "atom1_serNum": 63667, "atom2_serNum": 63773, "donAcc_type": "acceptable", "distance": 3.431, "atom1_id": "///E/60/O", "atom2_id": "///E/77/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6010, "atom1_serNum": 63702, "atom2_serNum": 63718, "donAcc_type": "standard", "distance": 2.709, "atom1_id": "///E/65/O", "atom2_id": "///E/68/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6011, "atom1_serNum": 63709, "atom2_serNum": 63716, "donAcc_type": "standard", "distance": 2.568, "atom1_id": "///E/67/N", "atom2_id": "///E/67/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6012, "atom1_serNum": 63717, "atom2_serNum": 63762, "donAcc_type": "standard", "distance": 2.468, "atom1_id": "///E/67/NE2", "atom2_id": "///E/75/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6013, "atom1_serNum": 63773, "atom2_serNum": 63782, "donAcc_type": "acceptable", "distance": 2.827, "atom1_id": "///E/77/OG", "atom2_id": "///E/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6014, "atom1_serNum": 63791, "atom2_serNum": 63843, "donAcc_type": "standard", "distance": 3.765, "atom1_id": "///E/79/NH1", "atom2_id": "///E/85/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6015, "atom1_serNum": 63796, "atom2_serNum": 63815, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///E/80/O", "atom2_id": "///E/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6016, "atom1_serNum": 63798, "atom2_serNum": 63813, "donAcc_type": "acceptable", "distance": 2.830, "atom1_id": "///E/80/OG", "atom2_id": "///E/82/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6017, "atom1_serNum": 63798, "atom2_serNum": 63814, "donAcc_type": "acceptable", "distance": 3.115, "atom1_id": "///E/80/OG", "atom2_id": "///E/82/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6018, "atom1_serNum": 63806, "atom2_serNum": 63813, "donAcc_type": "standard", "distance": 2.634, "atom1_id": "///E/82/N", "atom2_id": "///E/82/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6019, "atom1_serNum": 63916, "atom2_serNum": 63929, "donAcc_type": "acceptable", "distance": 3.200, "atom1_id": "///E/96/OG", "atom2_id": "///E/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6020, "atom1_serNum": 63916, "atom2_serNum": 63934, "donAcc_type": "acceptable", "distance": 3.025, "atom1_id": "///E/96/OG", "atom2_id": "///E/98/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6021, "atom1_serNum": 63932, "atom2_serNum": 63934, "donAcc_type": "acceptable", "distance": 2.933, "atom1_id": "///E/98/O", "atom2_id": "///E/98/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6022, "atom1_serNum": 63955, "atom2_serNum": 63995, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///E/101/O", "atom2_id": "///E/106/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6023, "atom1_serNum": 63955, "atom2_serNum": 63998, "donAcc_type": "standard", "distance": 2.492, "atom1_id": "///E/101/O", "atom2_id": "///E/106/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6024, "atom1_serNum": 63970, "atom2_serNum": 63999, "donAcc_type": "standard", "distance": 3.425, "atom1_id": "///E/103/O", "atom2_id": "///E/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6025, "atom1_serNum": 63975, "atom2_serNum": 63999, "donAcc_type": "standard", "distance": 2.745, "atom1_id": "///E/104/O", "atom2_id": "///E/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6026, "atom1_serNum": 63975, "atom2_serNum": 64010, "donAcc_type": "standard", "distance": 2.780, "atom1_id": "///E/104/O", "atom2_id": "///E/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6027, "atom1_serNum": 63984, "atom2_serNum": 64018, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///E/105/O", "atom2_id": "///E/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6028, "atom1_serNum": 63991, "atom2_serNum": 64023, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///E/106/O", "atom2_id": "///E/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6029, "atom1_serNum": 64002, "atom2_serNum": 64031, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///E/107/O", "atom2_id": "///E/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6030, "atom1_serNum": 64013, "atom2_serNum": 64040, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///E/108/O", "atom2_id": "///E/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6031, "atom1_serNum": 64021, "atom2_serNum": 64040, "donAcc_type": "standard", "distance": 2.759, "atom1_id": "///E/109/O", "atom2_id": "///E/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6032, "atom1_serNum": 64021, "atom2_serNum": 64046, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///E/109/O", "atom2_id": "///E/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6033, "atom1_serNum": 64026, "atom2_serNum": 64053, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///E/110/O", "atom2_id": "///E/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6034, "atom1_serNum": 64034, "atom2_serNum": 64061, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///E/111/O", "atom2_id": "///E/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6035, "atom1_serNum": 64043, "atom2_serNum": 64066, "donAcc_type": "acceptable", "distance": 2.588, "atom1_id": "///E/112/O", "atom2_id": "///E/115/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6036, "atom1_serNum": 64043, "atom2_serNum": 64067, "donAcc_type": "standard", "distance": 3.385, "atom1_id": "///E/112/O", "atom2_id": "///E/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6037, "atom1_serNum": 64049, "atom2_serNum": 64072, "donAcc_type": "acceptable", "distance": 3.064, "atom1_id": "///E/113/O", "atom2_id": "///E/116/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6038, "atom1_serNum": 64049, "atom2_serNum": 64073, "donAcc_type": "standard", "distance": 3.719, "atom1_id": "///E/113/O", "atom2_id": "///E/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6039, "atom1_serNum": 64056, "atom2_serNum": 64078, "donAcc_type": "standard", "distance": 3.617, "atom1_id": "///E/114/O", "atom2_id": "///E/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6040, "atom1_serNum": 64064, "atom2_serNum": 64078, "donAcc_type": "standard", "distance": 3.059, "atom1_id": "///E/115/O", "atom2_id": "///E/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6041, "atom1_serNum": 64070, "atom2_serNum": 64093, "donAcc_type": "standard", "distance": 3.180, "atom1_id": "///E/116/O", "atom2_id": "///E/120/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6042, "atom1_serNum": 64076, "atom2_serNum": 64109, "donAcc_type": "standard", "distance": 3.555, "atom1_id": "///E/117/O", "atom2_id": "///E/122/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6043, "atom1_serNum": 64081, "atom2_serNum": 64101, "donAcc_type": "standard", "distance": 2.997, "atom1_id": "///E/118/O", "atom2_id": "///E/121/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6044, "atom1_serNum": 64112, "atom2_serNum": 64609, "donAcc_type": "standard", "distance": 3.551, "atom1_id": "///E/122/O", "atom2_id": "///E/192/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6045, "atom1_serNum": 64125, "atom2_serNum": 64612, "donAcc_type": "standard", "distance": 3.160, "atom1_id": "///E/124/N", "atom2_id": "///E/192/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6046, "atom1_serNum": 64128, "atom2_serNum": 64625, "donAcc_type": "standard", "distance": 3.525, "atom1_id": "///E/124/O", "atom2_id": "///E/194/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6047, "atom1_serNum": 64140, "atom2_serNum": 64628, "donAcc_type": "standard", "distance": 2.725, "atom1_id": "///E/126/N", "atom2_id": "///E/194/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6048, "atom1_serNum": 64143, "atom2_serNum": 64640, "donAcc_type": "standard", "distance": 3.038, "atom1_id": "///E/126/O", "atom2_id": "///E/196/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6049, "atom1_serNum": 64157, "atom2_serNum": 64163, "donAcc_type": "standard", "distance": 2.584, "atom1_id": "///E/128/N", "atom2_id": "///E/128/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6050, "atom1_serNum": 64176, "atom2_serNum": 64178, "donAcc_type": "acceptable", "distance": 2.780, "atom1_id": "///E/130/O", "atom2_id": "///E/130/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6051, "atom1_serNum": 64220, "atom2_serNum": 64238, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///E/136/O", "atom2_id": "///E/139/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6052, "atom1_serNum": 64220, "atom2_serNum": 64243, "donAcc_type": "standard", "distance": 3.252, "atom1_id": "///E/136/O", "atom2_id": "///E/140/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6053, "atom1_serNum": 64222, "atom2_serNum": 64420, "donAcc_type": "acceptable", "distance": 3.220, "atom1_id": "///E/136/OG1", "atom2_id": "///E/166/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6054, "atom1_serNum": 64227, "atom2_serNum": 64248, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///E/137/O", "atom2_id": "///E/141/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6055, "atom1_serNum": 64236, "atom2_serNum": 64253, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///E/138/O", "atom2_id": "///E/142/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6056, "atom1_serNum": 64241, "atom2_serNum": 64261, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///E/139/O", "atom2_id": "///E/143/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6057, "atom1_serNum": 64246, "atom2_serNum": 64269, "donAcc_type": "standard", "distance": 2.987, "atom1_id": "///E/140/O", "atom2_id": "///E/144/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6058, "atom1_serNum": 64251, "atom2_serNum": 64274, "donAcc_type": "standard", "distance": 2.786, "atom1_id": "///E/141/O", "atom2_id": "///E/145/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6059, "atom1_serNum": 64256, "atom2_serNum": 64278, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///E/142/O", "atom2_id": "///E/146/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6060, "atom1_serNum": 64272, "atom2_serNum": 64286, "donAcc_type": "standard", "distance": 2.822, "atom1_id": "///E/144/O", "atom2_id": "///E/147/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6061, "atom1_serNum": 64289, "atom2_serNum": 64291, "donAcc_type": "acceptable", "distance": 2.437, "atom1_id": "///E/147/O", "atom2_id": "///E/147/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6062, "atom1_serNum": 64316, "atom2_serNum": 64591, "donAcc_type": "standard", "distance": 3.026, "atom1_id": "///E/151/O", "atom2_id": "///E/190/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6063, "atom1_serNum": 64316, "atom2_serNum": 64600, "donAcc_type": "standard", "distance": 3.534, "atom1_id": "///E/151/O", "atom2_id": "///E/191/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6064, "atom1_serNum": 64321, "atom2_serNum": 64579, "donAcc_type": "standard", "distance": 3.449, "atom1_id": "///E/151/NZ", "atom2_id": "///E/188/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6065, "atom1_serNum": 64322, "atom2_serNum": 64465, "donAcc_type": "standard", "distance": 2.850, "atom1_id": "///E/152/N", "atom2_id": "///E/172/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6066, "atom1_serNum": 64327, "atom2_serNum": 64603, "donAcc_type": "standard", "distance": 3.068, "atom1_id": "///E/153/N", "atom2_id": "///E/191/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6067, "atom1_serNum": 64330, "atom2_serNum": 64617, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///E/153/O", "atom2_id": "///E/193/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6068, "atom1_serNum": 64335, "atom2_serNum": 64476, "donAcc_type": "standard", "distance": 2.845, "atom1_id": "///E/154/N", "atom2_id": "///E/174/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6069, "atom1_serNum": 64338, "atom2_serNum": 64487, "donAcc_type": "standard", "distance": 2.702, "atom1_id": "///E/154/O", "atom2_id": "///E/176/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6070, "atom1_serNum": 64343, "atom2_serNum": 64620, "donAcc_type": "standard", "distance": 3.321, "atom1_id": "///E/155/N", "atom2_id": "///E/193/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6071, "atom1_serNum": 64350, "atom2_serNum": 64490, "donAcc_type": "standard", "distance": 3.124, "atom1_id": "///E/156/N", "atom2_id": "///E/176/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6072, "atom1_serNum": 64353, "atom2_serNum": 64503, "donAcc_type": "standard", "distance": 3.052, "atom1_id": "///E/156/O", "atom2_id": "///E/178/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6073, "atom1_serNum": 64355, "atom2_serNum": 64375, "donAcc_type": "acceptable", "distance": 3.563, "atom1_id": "///E/156/OG1", "atom2_id": "///E/160/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6074, "atom1_serNum": 64362, "atom2_serNum": 64368, "donAcc_type": "standard", "distance": 2.566, "atom1_id": "///E/158/N", "atom2_id": "///E/158/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6075, "atom1_serNum": 64381, "atom2_serNum": 64397, "donAcc_type": "standard", "distance": 2.488, "atom1_id": "///E/160/OD1", "atom2_id": "///E/163/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6076, "atom1_serNum": 64383, "atom2_serNum": 64390, "donAcc_type": "standard", "distance": 2.581, "atom1_id": "///E/161/N", "atom2_id": "///E/161/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6077, "atom1_serNum": 64386, "atom2_serNum": 64409, "donAcc_type": "standard", "distance": 2.416, "atom1_id": "///E/161/O", "atom2_id": "///E/165/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6078, "atom1_serNum": 64395, "atom2_serNum": 64417, "donAcc_type": "standard", "distance": 2.773, "atom1_id": "///E/162/O", "atom2_id": "///E/166/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6079, "atom1_serNum": 64400, "atom2_serNum": 64423, "donAcc_type": "standard", "distance": 3.165, "atom1_id": "///E/163/O", "atom2_id": "///E/167/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6080, "atom1_serNum": 64412, "atom2_serNum": 64428, "donAcc_type": "standard", "distance": 3.128, "atom1_id": "///E/165/O", "atom2_id": "///E/168/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6081, "atom1_serNum": 64458, "atom2_serNum": 64466, "donAcc_type": "standard", "distance": 3.099, "atom1_id": "///E/171/O", "atom2_id": "///E/173/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6082, "atom1_serNum": 64476, "atom2_serNum": 64478, "donAcc_type": "acceptable", "distance": 2.615, "atom1_id": "///E/174/O", "atom2_id": "///E/174/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6083, "atom1_serNum": 64511, "atom2_serNum": 64520, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///E/179/O", "atom2_id": "///E/181/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6084, "atom1_serNum": 64531, "atom2_serNum": 64559, "donAcc_type": "standard", "distance": 3.306, "atom1_id": "///E/182/O", "atom2_id": "///E/186/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6085, "atom1_serNum": 64535, "atom2_serNum": 64558, "donAcc_type": "standard", "distance": 3.215, "atom1_id": "///E/182/ND2", "atom2_id": "///E/185/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6086, "atom1_serNum": 64539, "atom2_serNum": 64566, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///E/183/O", "atom2_id": "///E/187/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6087, "atom1_serNum": 64546, "atom2_serNum": 64573, "donAcc_type": "standard", "distance": 2.736, "atom1_id": "///E/184/O", "atom2_id": "///E/188/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6088, "atom1_serNum": 64554, "atom2_serNum": 64581, "donAcc_type": "standard", "distance": 3.086, "atom1_id": "///E/185/O", "atom2_id": "///E/189/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6089, "atom1_serNum": 64562, "atom2_serNum": 64584, "donAcc_type": "questionable", "distance": 3.206, "atom1_id": "///E/186/O", "atom2_id": "///E/189/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6090, "atom1_serNum": 64579, "atom2_serNum": 64587, "donAcc_type": "acceptable", "distance": 2.867, "atom1_id": "///E/188/OD1", "atom2_id": "///E/189/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6091, "atom1_serNum": 64636, "atom2_serNum": 64659, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///E/195/O", "atom2_id": "///E/199/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6092, "atom1_serNum": 64643, "atom2_serNum": 64666, "donAcc_type": "standard", "distance": 2.929, "atom1_id": "///E/196/O", "atom2_id": "///E/200/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6093, "atom1_serNum": 64652, "atom2_serNum": 64675, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///E/197/O", "atom2_id": "///E/201/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6094, "atom1_serNum": 64657, "atom2_serNum": 64684, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///E/198/O", "atom2_id": "///E/202/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6095, "atom1_serNum": 64662, "atom2_serNum": 64691, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///E/199/O", "atom2_id": "///E/203/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6096, "atom1_serNum": 64669, "atom2_serNum": 64700, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///E/200/O", "atom2_id": "///E/204/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6097, "atom1_serNum": 64678, "atom2_serNum": 64709, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///E/201/O", "atom2_id": "///E/205/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6098, "atom1_serNum": 64687, "atom2_serNum": 64716, "donAcc_type": "standard", "distance": 2.594, "atom1_id": "///E/202/O", "atom2_id": "///E/206/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6099, "atom1_serNum": 64694, "atom2_serNum": 64719, "donAcc_type": "questionable", "distance": 2.825, "atom1_id": "///E/203/O", "atom2_id": "///E/206/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6100, "atom1_serNum": 64728, "atom2_serNum": 64743, "donAcc_type": "standard", "distance": 3.286, "atom1_id": "///F/4/O", "atom2_id": "///F/7/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6101, "atom1_serNum": 64733, "atom2_serNum": 64746, "donAcc_type": "questionable", "distance": 2.944, "atom1_id": "///F/5/O", "atom2_id": "///F/7/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6102, "atom1_serNum": 64770, "atom2_serNum": 64779, "donAcc_type": "standard", "distance": 2.995, "atom1_id": "///F/25/O", "atom2_id": "///F/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6103, "atom1_serNum": 64770, "atom2_serNum": 64827, "donAcc_type": "questionable", "distance": 2.991, "atom1_id": "///F/25/O", "atom2_id": "///F/34/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6104, "atom1_serNum": 64770, "atom2_serNum": 64839, "donAcc_type": "standard", "distance": 3.996, "atom1_id": "///F/25/O", "atom2_id": "///F/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6105, "atom1_serNum": 64777, "atom2_serNum": 64786, "donAcc_type": "standard", "distance": 3.162, "atom1_id": "///F/26/O", "atom2_id": "///F/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6106, "atom1_serNum": 64779, "atom2_serNum": 64827, "donAcc_type": "standard", "distance": 3.156, "atom1_id": "///F/27/N", "atom2_id": "///F/34/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6107, "atom1_serNum": 64782, "atom2_serNum": 64824, "donAcc_type": "standard", "distance": 3.287, "atom1_id": "///F/27/O", "atom2_id": "///F/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6108, "atom1_serNum": 64883, "atom2_serNum": 64903, "donAcc_type": "questionable", "distance": 3.292, "atom1_id": "///F/41/O", "atom2_id": "///F/43/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6109, "atom1_serNum": 64887, "atom2_serNum": 65049, "donAcc_type": "standard", "distance": 3.626, "atom1_id": "///F/41/OD2", "atom2_id": "///F/62/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6110, "atom1_serNum": 64896, "atom2_serNum": 64903, "donAcc_type": "standard", "distance": 2.674, "atom1_id": "///F/43/N", "atom2_id": "///F/43/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6111, "atom1_serNum": 64913, "atom2_serNum": 64965, "donAcc_type": "standard", "distance": 3.314, "atom1_id": "///F/45/N", "atom2_id": "///F/52/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6112, "atom1_serNum": 64916, "atom2_serNum": 64962, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///F/45/O", "atom2_id": "///F/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6113, "atom1_serNum": 64925, "atom2_serNum": 64953, "donAcc_type": "standard", "distance": 2.326, "atom1_id": "///F/47/N", "atom2_id": "///F/50/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6114, "atom1_serNum": 64928, "atom2_serNum": 64942, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///F/47/O", "atom2_id": "///F/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6115, "atom1_serNum": 64928, "atom2_serNum": 64950, "donAcc_type": "standard", "distance": 3.290, "atom1_id": "///F/47/O", "atom2_id": "///F/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6116, "atom1_serNum": 64934, "atom2_serNum": 64940, "donAcc_type": "standard", "distance": 2.517, "atom1_id": "///F/48/N", "atom2_id": "///F/48/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6117, "atom1_serNum": 64991, "atom2_serNum": 65053, "donAcc_type": "standard", "distance": 3.985, "atom1_id": "///F/55/NH2", "atom2_id": "///F/63/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6118, "atom1_serNum": 65004, "atom2_serNum": 65013, "donAcc_type": "acceptable", "distance": 3.243, "atom1_id": "///F/57/OG", "atom2_id": "///F/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6119, "atom1_serNum": 65008, "atom2_serNum": 65057, "donAcc_type": "standard", "distance": 2.577, "atom1_id": "///F/58/O", "atom2_id": "///F/63/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6120, "atom1_serNum": 65008, "atom2_serNum": 65060, "donAcc_type": "standard", "distance": 2.492, "atom1_id": "///F/58/O", "atom2_id": "///F/63/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6121, "atom1_serNum": 65012, "atom2_serNum": 65057, "donAcc_type": "standard", "distance": 2.983, "atom1_id": "///F/58/OD2", "atom2_id": "///F/63/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6122, "atom1_serNum": 65016, "atom2_serNum": 65040, "donAcc_type": "standard", "distance": 2.802, "atom1_id": "///F/59/O", "atom2_id": "///F/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6123, "atom1_serNum": 65016, "atom2_serNum": 65050, "donAcc_type": "standard", "distance": 2.765, "atom1_id": "///F/59/O", "atom2_id": "///F/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6124, "atom1_serNum": 65025, "atom2_serNum": 65061, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///F/60/O", "atom2_id": "///F/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6125, "atom1_serNum": 65034, "atom2_serNum": 65066, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///F/61/O", "atom2_id": "///F/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6126, "atom1_serNum": 65043, "atom2_serNum": 65074, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///F/62/O", "atom2_id": "///F/66/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6127, "atom1_serNum": 65053, "atom2_serNum": 65084, "donAcc_type": "standard", "distance": 3.645, "atom1_id": "///F/63/O", "atom2_id": "///F/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6128, "atom1_serNum": 65064, "atom2_serNum": 65093, "donAcc_type": "acceptable", "distance": 3.272, "atom1_id": "///F/64/O", "atom2_id": "///F/68/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6129, "atom1_serNum": 65069, "atom2_serNum": 65095, "donAcc_type": "standard", "distance": 2.892, "atom1_id": "///F/65/O", "atom2_id": "///F/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6130, "atom1_serNum": 65077, "atom2_serNum": 65100, "donAcc_type": "acceptable", "distance": 2.413, "atom1_id": "///F/66/O", "atom2_id": "///F/69/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6131, "atom1_serNum": 65077, "atom2_serNum": 65102, "donAcc_type": "standard", "distance": 3.008, "atom1_id": "///F/66/O", "atom2_id": "///F/70/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6132, "atom1_serNum": 65087, "atom2_serNum": 65107, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///F/67/O", "atom2_id": "///F/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6133, "atom1_serNum": 65091, "atom2_serNum": 65112, "donAcc_type": "acceptable", "distance": 2.773, "atom1_id": "///F/68/O", "atom2_id": "///F/71/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6134, "atom1_serNum": 65091, "atom2_serNum": 65113, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///F/68/O", "atom2_id": "///F/72/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6135, "atom1_serNum": 65098, "atom2_serNum": 65121, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///F/69/O", "atom2_id": "///F/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6136, "atom1_serNum": 65105, "atom2_serNum": 65129, "donAcc_type": "standard", "distance": 2.974, "atom1_id": "///F/70/O", "atom2_id": "///F/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6137, "atom1_serNum": 65110, "atom2_serNum": 65133, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///F/71/O", "atom2_id": "///F/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6138, "atom1_serNum": 65116, "atom2_serNum": 65141, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///F/72/O", "atom2_id": "///F/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6139, "atom1_serNum": 65124, "atom2_serNum": 65149, "donAcc_type": "standard", "distance": 2.967, "atom1_id": "///F/73/O", "atom2_id": "///F/77/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6140, "atom1_serNum": 65132, "atom2_serNum": 65156, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///F/74/O", "atom2_id": "///F/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6141, "atom1_serNum": 65136, "atom2_serNum": 65165, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///F/75/O", "atom2_id": "///F/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6142, "atom1_serNum": 65144, "atom2_serNum": 65169, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///F/76/O", "atom2_id": "///F/80/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6143, "atom1_serNum": 65152, "atom2_serNum": 65174, "donAcc_type": "standard", "distance": 2.958, "atom1_id": "///F/77/O", "atom2_id": "///F/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6144, "atom1_serNum": 65159, "atom2_serNum": 65179, "donAcc_type": "acceptable", "distance": 2.136, "atom1_id": "///F/78/O", "atom2_id": "///F/81/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6145, "atom1_serNum": 65159, "atom2_serNum": 65180, "donAcc_type": "standard", "distance": 3.017, "atom1_id": "///F/78/O", "atom2_id": "///F/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6146, "atom1_serNum": 65159, "atom2_serNum": 65189, "donAcc_type": "standard", "distance": 3.662, "atom1_id": "///F/78/O", "atom2_id": "///F/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6147, "atom1_serNum": 65217, "atom2_serNum": 70371, "donAcc_type": "acceptable", "distance": 3.447, "atom1_id": "///G/4/OG1", "atom2_id": "///L/64/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6148, "atom1_serNum": 65222, "atom2_serNum": 70371, "donAcc_type": "standard", "distance": 3.088, "atom1_id": "///G/5/O", "atom2_id": "///L/64/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6149, "atom1_serNum": 65222, "atom2_serNum": 70372, "donAcc_type": "standard", "distance": 3.274, "atom1_id": "///G/5/O", "atom2_id": "///L/64/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6150, "atom1_serNum": 65234, "atom2_serNum": 65532, "donAcc_type": "acceptable", "distance": 3.393, "atom1_id": "///G/7/N", "atom2_id": "///G/46/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6151, "atom1_serNum": 65239, "atom2_serNum": 65260, "donAcc_type": "acceptable", "distance": 2.525, "atom1_id": "///G/8/N", "atom2_id": "///G/11/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6152, "atom1_serNum": 65242, "atom2_serNum": 65249, "donAcc_type": "standard", "distance": 2.818, "atom1_id": "///G/8/O", "atom2_id": "///G/10/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6153, "atom1_serNum": 65242, "atom2_serNum": 65255, "donAcc_type": "standard", "distance": 2.816, "atom1_id": "///G/8/O", "atom2_id": "///G/11/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6154, "atom1_serNum": 65242, "atom2_serNum": 65260, "donAcc_type": "acceptable", "distance": 2.647, "atom1_id": "///G/8/O", "atom2_id": "///G/11/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6155, "atom1_serNum": 65247, "atom2_serNum": 65262, "donAcc_type": "standard", "distance": 3.368, "atom1_id": "///G/9/O", "atom2_id": "///G/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6156, "atom1_serNum": 65290, "atom2_serNum": 65583, "donAcc_type": "standard", "distance": 3.154, "atom1_id": "///G/15/N", "atom2_id": "///G/53/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6157, "atom1_serNum": 65293, "atom2_serNum": 65585, "donAcc_type": "standard", "distance": 3.067, "atom1_id": "///G/15/O", "atom2_id": "///G/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6158, "atom1_serNum": 65293, "atom2_serNum": 65591, "donAcc_type": "acceptable", "distance": 2.556, "atom1_id": "///G/15/O", "atom2_id": "///G/54/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6159, "atom1_serNum": 65298, "atom2_serNum": 66262, "donAcc_type": "standard", "distance": 3.274, "atom1_id": "///G/15/NZ", "atom2_id": "///G/139/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6160, "atom1_serNum": 65302, "atom2_serNum": 66255, "donAcc_type": "standard", "distance": 2.728, "atom1_id": "///G/16/O", "atom2_id": "///G/139/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6161, "atom1_serNum": 65313, "atom2_serNum": 65588, "donAcc_type": "standard", "distance": 2.989, "atom1_id": "///G/17/N", "atom2_id": "///G/54/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6162, "atom1_serNum": 65316, "atom2_serNum": 65602, "donAcc_type": "standard", "distance": 2.792, "atom1_id": "///G/17/O", "atom2_id": "///G/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6163, "atom1_serNum": 65321, "atom2_serNum": 66258, "donAcc_type": "standard", "distance": 3.410, "atom1_id": "///G/18/N", "atom2_id": "///G/139/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6164, "atom1_serNum": 65324, "atom2_serNum": 66271, "donAcc_type": "standard", "distance": 2.846, "atom1_id": "///G/18/O", "atom2_id": "///G/141/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6165, "atom1_serNum": 65328, "atom2_serNum": 65605, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///G/19/N", "atom2_id": "///G/56/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6166, "atom1_serNum": 65331, "atom2_serNum": 65618, "donAcc_type": "standard", "distance": 3.335, "atom1_id": "///G/19/O", "atom2_id": "///G/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6167, "atom1_serNum": 65341, "atom2_serNum": 65633, "donAcc_type": "standard", "distance": 3.133, "atom1_id": "///G/20/OD1", "atom2_id": "///G/59/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6168, "atom1_serNum": 65342, "atom2_serNum": 65348, "donAcc_type": "standard", "distance": 3.150, "atom1_id": "///G/20/OD2", "atom2_id": "///G/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6169, "atom1_serNum": 65343, "atom2_serNum": 65621, "donAcc_type": "standard", "distance": 3.713, "atom1_id": "///G/21/N", "atom2_id": "///G/58/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6170, "atom1_serNum": 65351, "atom2_serNum": 65651, "donAcc_type": "questionable", "distance": 2.765, "atom1_id": "///G/22/O", "atom2_id": "///G/62/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6171, "atom1_serNum": 65360, "atom2_serNum": 65665, "donAcc_type": "standard", "distance": 3.292, "atom1_id": "///G/24/O", "atom2_id": "///G/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6172, "atom1_serNum": 65369, "atom2_serNum": 65396, "donAcc_type": "standard", "distance": 3.755, "atom1_id": "///G/25/O", "atom2_id": "///G/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6173, "atom1_serNum": 65373, "atom2_serNum": 65668, "donAcc_type": "standard", "distance": 3.478, "atom1_id": "///G/26/N", "atom2_id": "///G/64/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6174, "atom1_serNum": 65376, "atom2_serNum": 65404, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///G/26/O", "atom2_id": "///G/30/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6175, "atom1_serNum": 65376, "atom2_serNum": 65409, "donAcc_type": "acceptable", "distance": 2.603, "atom1_id": "///G/26/O", "atom2_id": "///G/30/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6176, "atom1_serNum": 65384, "atom2_serNum": 65409, "donAcc_type": "acceptable", "distance": 2.502, "atom1_id": "///G/27/O", "atom2_id": "///G/30/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6177, "atom1_serNum": 65384, "atom2_serNum": 65410, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///G/27/O", "atom2_id": "///G/31/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6178, "atom1_serNum": 65388, "atom2_serNum": 65415, "donAcc_type": "acceptable", "distance": 2.611, "atom1_id": "///G/28/O", "atom2_id": "///G/31/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6179, "atom1_serNum": 65388, "atom2_serNum": 65416, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///G/28/O", "atom2_id": "///G/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6180, "atom1_serNum": 65399, "atom2_serNum": 65425, "donAcc_type": "standard", "distance": 3.138, "atom1_id": "///G/29/O", "atom2_id": "///G/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6181, "atom1_serNum": 65407, "atom2_serNum": 65432, "donAcc_type": "standard", "distance": 3.006, "atom1_id": "///G/30/O", "atom2_id": "///G/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6182, "atom1_serNum": 65413, "atom2_serNum": 65437, "donAcc_type": "standard", "distance": 2.992, "atom1_id": "///G/31/O", "atom2_id": "///G/35/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6183, "atom1_serNum": 65419, "atom2_serNum": 65442, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///G/32/O", "atom2_id": "///G/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6184, "atom1_serNum": 65424, "atom2_serNum": 66311, "donAcc_type": "standard", "distance": 3.729, "atom1_id": "///G/32/OE2", "atom2_id": "///G/145/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6185, "atom1_serNum": 65428, "atom2_serNum": 65450, "donAcc_type": "standard", "distance": 2.716, "atom1_id": "///G/33/O", "atom2_id": "///G/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6186, "atom1_serNum": 65435, "atom2_serNum": 65458, "donAcc_type": "standard", "distance": 3.039, "atom1_id": "///G/34/O", "atom2_id": "///G/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6187, "atom1_serNum": 65440, "atom2_serNum": 65469, "donAcc_type": "standard", "distance": 3.167, "atom1_id": "///G/35/O", "atom2_id": "///G/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6188, "atom1_serNum": 65445, "atom2_serNum": 65469, "donAcc_type": "standard", "distance": 2.921, "atom1_id": "///G/36/O", "atom2_id": "///G/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6189, "atom1_serNum": 65468, "atom2_serNum": 65526, "donAcc_type": "acceptable", "distance": 3.516, "atom1_id": "///G/38/NH2", "atom2_id": "///G/45/OH", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6190, "atom1_serNum": 65472, "atom2_serNum": 65492, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///G/39/O", "atom2_id": "///G/42/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6191, "atom1_serNum": 65482, "atom2_serNum": 65488, "donAcc_type": "acceptable", "distance": 2.992, "atom1_id": "///G/41/N", "atom2_id": "///G/41/ND1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6192, "atom1_serNum": 65491, "atom2_serNum": 65584, "donAcc_type": "standard", "distance": 3.786, "atom1_id": "///G/41/NE2", "atom2_id": "///G/53/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6193, "atom1_serNum": 65500, "atom2_serNum": 65569, "donAcc_type": "standard", "distance": 2.899, "atom1_id": "///G/42/NZ", "atom2_id": "///G/51/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6194, "atom1_serNum": 65500, "atom2_serNum": 65583, "donAcc_type": "standard", "distance": 3.774, "atom1_id": "///G/42/NZ", "atom2_id": "///G/53/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6195, "atom1_serNum": 65518, "atom2_serNum": 65532, "donAcc_type": "acceptable", "distance": 2.903, "atom1_id": "///G/45/O", "atom2_id": "///G/46/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6196, "atom1_serNum": 65518, "atom2_serNum": 70369, "donAcc_type": "standard", "distance": 3.273, "atom1_id": "///G/45/O", "atom2_id": "///L/64/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6197, "atom1_serNum": 65518, "atom2_serNum": 70372, "donAcc_type": "standard", "distance": 2.383, "atom1_id": "///G/45/O", "atom2_id": "///L/64/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6198, "atom1_serNum": 65541, "atom2_serNum": 65547, "donAcc_type": "acceptable", "distance": 3.215, "atom1_id": "///G/48/N", "atom2_id": "///G/48/ND1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6199, "atom1_serNum": 65564, "atom2_serNum": 65566, "donAcc_type": "standard", "distance": 2.579, "atom1_id": "///G/50/OD1", "atom2_id": "///G/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6200, "atom1_serNum": 65564, "atom2_serNum": 65573, "donAcc_type": "standard", "distance": 2.761, "atom1_id": "///G/50/OD1", "atom2_id": "///G/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6201, "atom1_serNum": 65565, "atom2_serNum": 66123, "donAcc_type": "standard", "distance": 2.590, "atom1_id": "///G/50/OD2", "atom2_id": "///G/122/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6202, "atom1_serNum": 65569, "atom2_serNum": 65571, "donAcc_type": "acceptable", "distance": 2.771, "atom1_id": "///G/51/O", "atom2_id": "///G/51/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6203, "atom1_serNum": 65598, "atom2_serNum": 66132, "donAcc_type": "standard", "distance": 3.323, "atom1_id": "///G/55/O", "atom2_id": "///G/124/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6204, "atom1_serNum": 65610, "atom2_serNum": 66135, "donAcc_type": "standard", "distance": 3.435, "atom1_id": "///G/57/N", "atom2_id": "///G/124/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6205, "atom1_serNum": 65613, "atom2_serNum": 66147, "donAcc_type": "standard", "distance": 3.119, "atom1_id": "///G/57/O", "atom2_id": "///G/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6206, "atom1_serNum": 65626, "atom2_serNum": 66173, "donAcc_type": "standard", "distance": 2.428, "atom1_id": "///G/59/N", "atom2_id": "///G/128/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6207, "atom1_serNum": 65629, "atom2_serNum": 65648, "donAcc_type": "standard", "distance": 3.593, "atom1_id": "///G/59/O", "atom2_id": "///G/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6208, "atom1_serNum": 65632, "atom2_serNum": 66179, "donAcc_type": "acceptable", "distance": 2.380, "atom1_id": "///G/59/OD1", "atom2_id": "///G/129/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6209, "atom1_serNum": 65633, "atom2_serNum": 66179, "donAcc_type": "acceptable", "distance": 3.107, "atom1_id": "///G/59/ND2", "atom2_id": "///G/129/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6210, "atom1_serNum": 65634, "atom2_serNum": 66150, "donAcc_type": "standard", "distance": 3.626, "atom1_id": "///G/60/N", "atom2_id": "///G/126/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6211, "atom1_serNum": 65647, "atom2_serNum": 66170, "donAcc_type": "standard", "distance": 3.126, "atom1_id": "///G/61/OE2", "atom2_id": "///G/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6212, "atom1_serNum": 65651, "atom2_serNum": 65673, "donAcc_type": "questionable", "distance": 3.029, "atom1_id": "///G/62/O", "atom2_id": "///G/64/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6213, "atom1_serNum": 65660, "atom2_serNum": 65911, "donAcc_type": "standard", "distance": 2.599, "atom1_id": "///G/63/O", "atom2_id": "///G/94/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6214, "atom1_serNum": 65660, "atom2_serNum": 65912, "donAcc_type": "standard", "distance": 3.088, "atom1_id": "///G/63/O", "atom2_id": "///G/94/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6215, "atom1_serNum": 65685, "atom2_serNum": 65702, "donAcc_type": "standard", "distance": 3.353, "atom1_id": "///G/66/O", "atom2_id": "///G/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6216, "atom1_serNum": 65696, "atom2_serNum": 65719, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///G/68/O", "atom2_id": "///G/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6217, "atom1_serNum": 65696, "atom2_serNum": 65726, "donAcc_type": "standard", "distance": 3.367, "atom1_id": "///G/68/O", "atom2_id": "///G/72/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6218, "atom1_serNum": 65705, "atom2_serNum": 65734, "donAcc_type": "standard", "distance": 3.372, "atom1_id": "///G/69/O", "atom2_id": "///G/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6219, "atom1_serNum": 65729, "atom2_serNum": 65743, "donAcc_type": "standard", "distance": 3.261, "atom1_id": "///G/72/O", "atom2_id": "///G/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6220, "atom1_serNum": 65732, "atom2_serNum": 65734, "donAcc_type": "standard", "distance": 2.713, "atom1_id": "///G/72/OD1", "atom2_id": "///G/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6221, "atom1_serNum": 65737, "atom2_serNum": 65872, "donAcc_type": "standard", "distance": 3.345, "atom1_id": "///G/73/O", "atom2_id": "///G/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6222, "atom1_serNum": 65751, "atom2_serNum": 65863, "donAcc_type": "standard", "distance": 3.174, "atom1_id": "///G/75/N", "atom2_id": "///G/88/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6223, "atom1_serNum": 65754, "atom2_serNum": 65860, "donAcc_type": "standard", "distance": 3.430, "atom1_id": "///G/75/O", "atom2_id": "///G/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6224, "atom1_serNum": 65775, "atom2_serNum": 65848, "donAcc_type": "standard", "distance": 3.727, "atom1_id": "///G/77/N", "atom2_id": "///G/86/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6225, "atom1_serNum": 65792, "atom2_serNum": 65799, "donAcc_type": "acceptable", "distance": 2.398, "atom1_id": "///G/78/ND1", "atom2_id": "///G/79/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6226, "atom1_serNum": 65796, "atom2_serNum": 65836, "donAcc_type": "standard", "distance": 3.958, "atom1_id": "///G/79/N", "atom2_id": "///G/84/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6227, "atom1_serNum": 65815, "atom2_serNum": 65833, "donAcc_type": "standard", "distance": 3.733, "atom1_id": "///G/81/O", "atom2_id": "///G/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6228, "atom1_serNum": 65868, "atom2_serNum": 65892, "donAcc_type": "questionable", "distance": 2.653, "atom1_id": "///G/89/O", "atom2_id": "///G/92/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6229, "atom1_serNum": 65868, "atom2_serNum": 65894, "donAcc_type": "standard", "distance": 3.699, "atom1_id": "///G/89/O", "atom2_id": "///G/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6230, "atom1_serNum": 65875, "atom2_serNum": 65902, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///G/90/O", "atom2_id": "///G/94/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6231, "atom1_serNum": 65880, "atom2_serNum": 65913, "donAcc_type": "standard", "distance": 3.179, "atom1_id": "///G/91/O", "atom2_id": "///G/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6232, "atom1_serNum": 65885, "atom2_serNum": 65892, "donAcc_type": "standard", "distance": 2.686, "atom1_id": "///G/92/N", "atom2_id": "///G/92/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6233, "atom1_serNum": 65888, "atom2_serNum": 65920, "donAcc_type": "standard", "distance": 2.717, "atom1_id": "///G/92/O", "atom2_id": "///G/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6234, "atom1_serNum": 65888, "atom2_serNum": 65928, "donAcc_type": "standard", "distance": 3.495, "atom1_id": "///G/92/O", "atom2_id": "///G/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6235, "atom1_serNum": 65897, "atom2_serNum": 65940, "donAcc_type": "standard", "distance": 2.954, "atom1_id": "///G/93/O", "atom2_id": "///G/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6236, "atom1_serNum": 65916, "atom2_serNum": 66169, "donAcc_type": "standard", "distance": 3.591, "atom1_id": "///G/95/O", "atom2_id": "///G/127/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6237, "atom1_serNum": 65923, "atom2_serNum": 66168, "donAcc_type": "standard", "distance": 3.954, "atom1_id": "///G/96/O", "atom2_id": "///G/127/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6238, "atom1_serNum": 65943, "atom2_serNum": 65952, "donAcc_type": "standard", "distance": 2.618, "atom1_id": "///G/98/O", "atom2_id": "///G/100/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6239, "atom1_serNum": 65950, "atom2_serNum": 65977, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///G/99/O", "atom2_id": "///G/103/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6240, "atom1_serNum": 65955, "atom2_serNum": 65986, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///G/100/O", "atom2_id": "///G/104/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6241, "atom1_serNum": 65964, "atom2_serNum": 65994, "donAcc_type": "standard", "distance": 3.553, "atom1_id": "///G/101/O", "atom2_id": "///G/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6242, "atom1_serNum": 65972, "atom2_serNum": 65999, "donAcc_type": "standard", "distance": 3.559, "atom1_id": "///G/102/O", "atom2_id": "///G/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6243, "atom1_serNum": 65980, "atom2_serNum": 66007, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///G/103/O", "atom2_id": "///G/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6244, "atom1_serNum": 65989, "atom2_serNum": 66012, "donAcc_type": "standard", "distance": 3.057, "atom1_id": "///G/104/O", "atom2_id": "///G/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6245, "atom1_serNum": 65997, "atom2_serNum": 66012, "donAcc_type": "standard", "distance": 3.074, "atom1_id": "///G/105/O", "atom2_id": "///G/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6246, "atom1_serNum": 65997, "atom2_serNum": 66016, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///G/105/O", "atom2_id": "///G/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6247, "atom1_serNum": 66010, "atom2_serNum": 66044, "donAcc_type": "standard", "distance": 2.669, "atom1_id": "///G/107/O", "atom2_id": "///G/112/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6248, "atom1_serNum": 66024, "atom2_serNum": 66044, "donAcc_type": "standard", "distance": 2.584, "atom1_id": "///G/110/O", "atom2_id": "///G/112/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6249, "atom1_serNum": 66032, "atom2_serNum": 66045, "donAcc_type": "standard", "distance": 3.256, "atom1_id": "///G/111/O", "atom2_id": "///G/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6250, "atom1_serNum": 66048, "atom2_serNum": 66063, "donAcc_type": "standard", "distance": 2.612, "atom1_id": "///G/113/O", "atom2_id": "///G/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6251, "atom1_serNum": 66048, "atom2_serNum": 66067, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///G/113/O", "atom2_id": "///G/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6252, "atom1_serNum": 66052, "atom2_serNum": 66078, "donAcc_type": "standard", "distance": 2.995, "atom1_id": "///G/114/O", "atom2_id": "///G/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6253, "atom1_serNum": 66058, "atom2_serNum": 66087, "donAcc_type": "standard", "distance": 3.081, "atom1_id": "///G/115/O", "atom2_id": "///G/119/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6254, "atom1_serNum": 66066, "atom2_serNum": 66095, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///G/116/O", "atom2_id": "///G/120/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6255, "atom1_serNum": 66139, "atom2_serNum": 66158, "donAcc_type": "acceptable", "distance": 2.808, "atom1_id": "///G/124/ND2", "atom2_id": "///G/126/OH", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6256, "atom1_serNum": 66189, "atom2_serNum": 66195, "donAcc_type": "acceptable", "distance": 3.040, "atom1_id": "///G/131/N", "atom2_id": "///G/131/ND1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6257, "atom1_serNum": 66192, "atom2_serNum": 66224, "donAcc_type": "questionable", "distance": 2.805, "atom1_id": "///G/131/O", "atom2_id": "///G/134/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6258, "atom1_serNum": 66242, "atom2_serNum": 66263, "donAcc_type": "questionable", "distance": 2.952, "atom1_id": "///G/137/O", "atom2_id": "///G/139/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6259, "atom1_serNum": 66255, "atom2_serNum": 66263, "donAcc_type": "standard", "distance": 2.672, "atom1_id": "///G/139/N", "atom2_id": "///G/139/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6260, "atom1_serNum": 66316, "atom2_serNum": 66540, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///H/2/N", "atom2_id": "///H/33/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6261, "atom1_serNum": 66319, "atom2_serNum": 66537, "donAcc_type": "standard", "distance": 3.170, "atom1_id": "///H/2/O", "atom2_id": "///H/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6262, "atom1_serNum": 66327, "atom2_serNum": 66356, "donAcc_type": "acceptable", "distance": 2.830, "atom1_id": "///H/3/O", "atom2_id": "///H/6/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6263, "atom1_serNum": 66341, "atom2_serNum": 66467, "donAcc_type": "standard", "distance": 3.991, "atom1_id": "///H/4/NE2", "atom2_id": "///H/22/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6264, "atom1_serNum": 66345, "atom2_serNum": 66356, "donAcc_type": "acceptable", "distance": 3.122, "atom1_id": "///H/5/O", "atom2_id": "///H/6/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6265, "atom1_serNum": 66369, "atom2_serNum": 66445, "donAcc_type": "standard", "distance": 2.509, "atom1_id": "///H/8/N", "atom2_id": "///H/19/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6266, "atom1_serNum": 66372, "atom2_serNum": 66442, "donAcc_type": "standard", "distance": 2.643, "atom1_id": "///H/8/O", "atom2_id": "///H/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6267, "atom1_serNum": 66377, "atom2_serNum": 66886, "donAcc_type": "standard", "distance": 3.880, "atom1_id": "///H/9/N", "atom2_id": "///H/82/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6268, "atom1_serNum": 66380, "atom2_serNum": 66896, "donAcc_type": "standard", "distance": 2.837, "atom1_id": "///H/9/O", "atom2_id": "///H/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6269, "atom1_serNum": 66382, "atom2_serNum": 66425, "donAcc_type": "standard", "distance": 2.976, "atom1_id": "///H/10/N", "atom2_id": "///H/17/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6270, "atom1_serNum": 66389, "atom2_serNum": 66899, "donAcc_type": "standard", "distance": 3.586, "atom1_id": "///H/11/N", "atom2_id": "///H/84/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6271, "atom1_serNum": 66397, "atom2_serNum": 66407, "donAcc_type": "standard", "distance": 2.706, "atom1_id": "///H/12/O", "atom2_id": "///H/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6272, "atom1_serNum": 66399, "atom2_serNum": 66989, "donAcc_type": "standard", "distance": 3.264, "atom1_id": "///H/13/N", "atom2_id": "///H/97/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6273, "atom1_serNum": 66402, "atom2_serNum": 66984, "donAcc_type": "acceptable", "distance": 3.495, "atom1_id": "///H/13/O", "atom2_id": "///H/96/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6274, "atom1_serNum": 66410, "atom2_serNum": 66664, "donAcc_type": "standard", "distance": 3.951, "atom1_id": "///H/14/O", "atom2_id": "///H/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6275, "atom1_serNum": 66416, "atom2_serNum": 66635, "donAcc_type": "standard", "distance": 2.444, "atom1_id": "///H/15/O", "atom2_id": "///H/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6276, "atom1_serNum": 66422, "atom2_serNum": 66624, "donAcc_type": "standard", "distance": 3.195, "atom1_id": "///H/17/N", "atom2_id": "///H/45/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6277, "atom1_serNum": 66433, "atom2_serNum": 66624, "donAcc_type": "standard", "distance": 3.060, "atom1_id": "///H/18/N", "atom2_id": "///H/45/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6278, "atom1_serNum": 66436, "atom2_serNum": 66621, "donAcc_type": "standard", "distance": 3.235, "atom1_id": "///H/18/O", "atom2_id": "///H/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6279, "atom1_serNum": 66436, "atom2_serNum": 66624, "donAcc_type": "questionable", "distance": 2.843, "atom1_id": "///H/18/O", "atom2_id": "///H/45/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6280, "atom1_serNum": 66449, "atom2_serNum": 66601, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///H/20/N", "atom2_id": "///H/42/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6281, "atom1_serNum": 66452, "atom2_serNum": 66598, "donAcc_type": "standard", "distance": 2.739, "atom1_id": "///H/20/O", "atom2_id": "///H/42/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6282, "atom1_serNum": 66464, "atom2_serNum": 66588, "donAcc_type": "standard", "distance": 2.663, "atom1_id": "///H/22/N", "atom2_id": "///H/40/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6283, "atom1_serNum": 66475, "atom2_serNum": 66585, "donAcc_type": "standard", "distance": 3.466, "atom1_id": "///H/23/O", "atom2_id": "///H/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6284, "atom1_serNum": 66488, "atom2_serNum": 66573, "donAcc_type": "standard", "distance": 3.375, "atom1_id": "///H/25/N", "atom2_id": "///H/38/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6285, "atom1_serNum": 66521, "atom2_serNum": 66533, "donAcc_type": "standard", "distance": 3.609, "atom1_id": "///H/30/NE", "atom2_id": "///H/32/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6286, "atom1_serNum": 66528, "atom2_serNum": 66535, "donAcc_type": "acceptable", "distance": 2.941, "atom1_id": "///H/31/O", "atom2_id": "///H/32/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6287, "atom1_serNum": 66542, "atom2_serNum": 66569, "donAcc_type": "standard", "distance": 2.532, "atom1_id": "///H/34/N", "atom2_id": "///H/37/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6288, "atom1_serNum": 66548, "atom2_serNum": 66764, "donAcc_type": "acceptable", "distance": 3.700, "atom1_id": "///H/34/OD1", "atom2_id": "///H/65/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6289, "atom1_serNum": 66549, "atom2_serNum": 66780, "donAcc_type": "standard", "distance": 3.623, "atom1_id": "///H/34/ND2", "atom2_id": "///H/68/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6290, "atom1_serNum": 66558, "atom2_serNum": 66736, "donAcc_type": "standard", "distance": 3.471, "atom1_id": "///H/36/N", "atom2_id": "///H/62/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6291, "atom1_serNum": 66561, "atom2_serNum": 67094, "donAcc_type": "standard", "distance": 3.249, "atom1_id": "///H/36/O", "atom2_id": "///H/109/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6292, "atom1_serNum": 66565, "atom2_serNum": 66733, "donAcc_type": "standard", "distance": 3.787, "atom1_id": "///H/37/O", "atom2_id": "///H/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6293, "atom1_serNum": 66577, "atom2_serNum": 66724, "donAcc_type": "standard", "distance": 3.298, "atom1_id": "///H/39/N", "atom2_id": "///H/60/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6294, "atom1_serNum": 66580, "atom2_serNum": 66721, "donAcc_type": "standard", "distance": 2.774, "atom1_id": "///H/39/O", "atom2_id": "///H/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6295, "atom1_serNum": 66592, "atom2_serNum": 66712, "donAcc_type": "standard", "distance": 2.709, "atom1_id": "///H/41/N", "atom2_id": "///H/58/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6296, "atom1_serNum": 66595, "atom2_serNum": 66709, "donAcc_type": "standard", "distance": 2.832, "atom1_id": "///H/41/O", "atom2_id": "///H/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6297, "atom1_serNum": 66601, "atom2_serNum": 66612, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///H/42/O", "atom2_id": "///H/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6298, "atom1_serNum": 66605, "atom2_serNum": 66696, "donAcc_type": "standard", "distance": 3.076, "atom1_id": "///H/43/N", "atom2_id": "///H/56/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6299, "atom1_serNum": 66608, "atom2_serNum": 66689, "donAcc_type": "standard", "distance": 3.300, "atom1_id": "///H/43/O", "atom2_id": "///H/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6300, "atom1_serNum": 66638, "atom2_serNum": 66653, "donAcc_type": "standard", "distance": 3.468, "atom1_id": "///H/47/O", "atom2_id": "///H/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6301, "atom1_serNum": 66649, "atom2_serNum": 66679, "donAcc_type": "questionable", "distance": 3.247, "atom1_id": "///H/49/N", "atom2_id": "///H/53/NZ", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6302, "atom1_serNum": 66674, "atom2_serNum": 66693, "donAcc_type": "standard", "distance": 3.761, "atom1_id": "///H/53/O", "atom2_id": "///H/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6303, "atom1_serNum": 66683, "atom2_serNum": 66693, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///H/54/O", "atom2_id": "///H/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6304, "atom1_serNum": 66726, "atom2_serNum": 66905, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///H/61/N", "atom2_id": "///H/85/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6305, "atom1_serNum": 66729, "atom2_serNum": 66902, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///H/61/O", "atom2_id": "///H/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6306, "atom1_serNum": 66744, "atom2_serNum": 67034, "donAcc_type": "standard", "distance": 3.946, "atom1_id": "///H/63/O", "atom2_id": "///H/103/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6307, "atom1_serNum": 66751, "atom2_serNum": 66891, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///H/64/O", "atom2_id": "///H/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6308, "atom1_serNum": 66757, "atom2_serNum": 67008, "donAcc_type": "standard", "distance": 3.223, "atom1_id": "///H/64/NH1", "atom2_id": "///H/99/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6309, "atom1_serNum": 66757, "atom2_serNum": 67023, "donAcc_type": "standard", "distance": 2.627, "atom1_id": "///H/64/NH1", "atom2_id": "///H/101/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6310, "atom1_serNum": 66762, "atom2_serNum": 66774, "donAcc_type": "questionable", "distance": 2.865, "atom1_id": "///H/65/O", "atom2_id": "///H/67/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6311, "atom1_serNum": 66764, "atom2_serNum": 66776, "donAcc_type": "acceptable", "distance": 2.884, "atom1_id": "///H/65/OG1", "atom2_id": "///H/67/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6312, "atom1_serNum": 66766, "atom2_serNum": 66889, "donAcc_type": "standard", "distance": 2.687, "atom1_id": "///H/66/N", "atom2_id": "///H/82/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6313, "atom1_serNum": 66769, "atom2_serNum": 66854, "donAcc_type": "acceptable", "distance": 3.056, "atom1_id": "///H/66/O", "atom2_id": "///H/78/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6314, "atom1_serNum": 66781, "atom2_serNum": 66844, "donAcc_type": "standard", "distance": 3.412, "atom1_id": "///H/69/N", "atom2_id": "///H/77/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6315, "atom1_serNum": 66797, "atom2_serNum": 66826, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///H/71/N", "atom2_id": "///H/75/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6316, "atom1_serNum": 66804, "atom2_serNum": 69535, "donAcc_type": "questionable", "distance": 2.871, "atom1_id": "///H/71/NE", "atom2_id": "///K/75/NH1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6317, "atom1_serNum": 66807, "atom2_serNum": 67191, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///H/71/NH2", "atom2_id": "///H/122/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6318, "atom1_serNum": 66826, "atom2_serNum": 66828, "donAcc_type": "acceptable", "distance": 2.985, "atom1_id": "///H/75/O", "atom2_id": "///H/75/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6319, "atom1_serNum": 66828, "atom2_serNum": 69536, "donAcc_type": "acceptable", "distance": 3.615, "atom1_id": "///H/75/OG", "atom2_id": "///K/75/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6320, "atom1_serNum": 66829, "atom2_serNum": 69540, "donAcc_type": "standard", "distance": 3.910, "atom1_id": "///H/76/N", "atom2_id": "///K/76/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6321, "atom1_serNum": 66849, "atom2_serNum": 69524, "donAcc_type": "standard", "distance": 3.398, "atom1_id": "///H/78/N", "atom2_id": "///K/74/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6322, "atom1_serNum": 66852, "atom2_serNum": 69521, "donAcc_type": "standard", "distance": 3.185, "atom1_id": "///H/78/O", "atom2_id": "///K/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6323, "atom1_serNum": 66854, "atom2_serNum": 66858, "donAcc_type": "acceptable", "distance": 3.159, "atom1_id": "///H/78/OG", "atom2_id": "///H/79/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6324, "atom1_serNum": 66873, "atom2_serNum": 69463, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///H/80/OD2", "atom2_id": "///K/65/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6325, "atom1_serNum": 66874, "atom2_serNum": 66881, "donAcc_type": "standard", "distance": 2.755, "atom1_id": "///H/81/N", "atom2_id": "///H/81/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6326, "atom1_serNum": 66925, "atom2_serNum": 66960, "donAcc_type": "standard", "distance": 3.466, "atom1_id": "///H/88/N", "atom2_id": "///H/92/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6327, "atom1_serNum": 66934, "atom2_serNum": 66962, "donAcc_type": "acceptable", "distance": 2.874, "atom1_id": "///H/88/NH1", "atom2_id": "///H/92/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6328, "atom1_serNum": 66944, "atom2_serNum": 66950, "donAcc_type": "standard", "distance": 2.735, "atom1_id": "///H/90/N", "atom2_id": "///H/90/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6329, "atom1_serNum": 66950, "atom2_serNum": 66962, "donAcc_type": "acceptable", "distance": 2.705, "atom1_id": "///H/90/OD1", "atom2_id": "///H/92/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6330, "atom1_serNum": 66951, "atom2_serNum": 66962, "donAcc_type": "acceptable", "distance": 3.123, "atom1_id": "///H/90/OD2", "atom2_id": "///H/92/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6331, "atom1_serNum": 66960, "atom2_serNum": 66962, "donAcc_type": "acceptable", "distance": 2.685, "atom1_id": "///H/92/O", "atom2_id": "///H/92/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6332, "atom1_serNum": 67027, "atom2_serNum": 67175, "donAcc_type": "standard", "distance": 2.851, "atom1_id": "///H/102/N", "atom2_id": "///H/120/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6333, "atom1_serNum": 67030, "atom2_serNum": 67188, "donAcc_type": "standard", "distance": 2.516, "atom1_id": "///H/102/O", "atom2_id": "///H/122/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6334, "atom1_serNum": 67037, "atom2_serNum": 67059, "donAcc_type": "standard", "distance": 3.328, "atom1_id": "///H/103/O", "atom2_id": "///H/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6335, "atom1_serNum": 67039, "atom2_serNum": 67191, "donAcc_type": "standard", "distance": 2.596, "atom1_id": "///H/104/N", "atom2_id": "///H/122/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6336, "atom1_serNum": 67042, "atom2_serNum": 67067, "donAcc_type": "standard", "distance": 2.844, "atom1_id": "///H/104/O", "atom2_id": "///H/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6337, "atom1_serNum": 67053, "atom2_serNum": 67078, "donAcc_type": "standard", "distance": 3.193, "atom1_id": "///H/105/O", "atom2_id": "///H/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6338, "atom1_serNum": 67062, "atom2_serNum": 67090, "donAcc_type": "questionable", "distance": 2.618, "atom1_id": "///H/106/O", "atom2_id": "///H/109/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6339, "atom1_serNum": 67078, "atom2_serNum": 67085, "donAcc_type": "standard", "distance": 2.507, "atom1_id": "///H/108/N", "atom2_id": "///H/108/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6340, "atom1_serNum": 67087, "atom2_serNum": 67093, "donAcc_type": "standard", "distance": 2.615, "atom1_id": "///H/109/N", "atom2_id": "///H/109/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6341, "atom1_serNum": 67090, "atom2_serNum": 67103, "donAcc_type": "standard", "distance": 2.683, "atom1_id": "///H/109/O", "atom2_id": "///H/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6342, "atom1_serNum": 67106, "atom2_serNum": 67139, "donAcc_type": "standard", "distance": 3.348, "atom1_id": "///H/111/O", "atom2_id": "///H/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6343, "atom1_serNum": 67117, "atom2_serNum": 67146, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///H/112/O", "atom2_id": "///H/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6344, "atom1_serNum": 67117, "atom2_serNum": 67151, "donAcc_type": "acceptable", "distance": 3.046, "atom1_id": "///H/112/O", "atom2_id": "///H/116/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6345, "atom1_serNum": 67125, "atom2_serNum": 67151, "donAcc_type": "acceptable", "distance": 2.512, "atom1_id": "///H/113/O", "atom2_id": "///H/116/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6346, "atom1_serNum": 67125, "atom2_serNum": 67152, "donAcc_type": "standard", "distance": 2.876, "atom1_id": "///H/113/O", "atom2_id": "///H/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6347, "atom1_serNum": 67134, "atom2_serNum": 67160, "donAcc_type": "standard", "distance": 2.528, "atom1_id": "///H/114/O", "atom2_id": "///H/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6348, "atom1_serNum": 67205, "atom2_serNum": 67240, "donAcc_type": "standard", "distance": 3.394, "atom1_id": "///I/2/N", "atom2_id": "///I/5/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6349, "atom1_serNum": 67208, "atom2_serNum": 67222, "donAcc_type": "standard", "distance": 2.690, "atom1_id": "///I/2/O", "atom2_id": "///I/4/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6350, "atom1_serNum": 67208, "atom2_serNum": 67232, "donAcc_type": "standard", "distance": 2.931, "atom1_id": "///I/2/O", "atom2_id": "///I/5/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6351, "atom1_serNum": 67228, "atom2_serNum": 67239, "donAcc_type": "acceptable", "distance": 3.594, "atom1_id": "///I/4/ND1", "atom2_id": "///I/5/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6352, "atom1_serNum": 67268, "atom2_serNum": 67284, "donAcc_type": "standard", "distance": 3.079, "atom1_id": "///I/9/O", "atom2_id": "///I/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6353, "atom1_serNum": 67268, "atom2_serNum": 67289, "donAcc_type": "acceptable", "distance": 2.344, "atom1_id": "///I/9/O", "atom2_id": "///I/12/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6354, "atom1_serNum": 67271, "atom2_serNum": 67278, "donAcc_type": "standard", "distance": 2.558, "atom1_id": "///I/10/N", "atom2_id": "///I/10/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6355, "atom1_serNum": 67315, "atom2_serNum": 67320, "donAcc_type": "acceptable", "distance": 3.136, "atom1_id": "///I/15/OG1", "atom2_id": "///I/16/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6356, "atom1_serNum": 67372, "atom2_serNum": 67390, "donAcc_type": "acceptable", "distance": 3.862, "atom1_id": "///I/22/O", "atom2_id": "///I/25/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6357, "atom1_serNum": 67372, "atom2_serNum": 67398, "donAcc_type": "questionable", "distance": 2.770, "atom1_id": "///I/22/O", "atom2_id": "///I/27/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6358, "atom1_serNum": 67376, "atom2_serNum": 67388, "donAcc_type": "questionable", "distance": 2.925, "atom1_id": "///I/23/O", "atom2_id": "///I/25/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6359, "atom1_serNum": 67390, "atom2_serNum": 67395, "donAcc_type": "acceptable", "distance": 3.035, "atom1_id": "///I/25/OG", "atom2_id": "///I/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6360, "atom1_serNum": 67394, "atom2_serNum": 67400, "donAcc_type": "standard", "distance": 3.180, "atom1_id": "///I/26/O", "atom2_id": "///I/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6361, "atom1_serNum": 67403, "atom2_serNum": 67416, "donAcc_type": "standard", "distance": 2.600, "atom1_id": "///I/28/O", "atom2_id": "///I/31/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6362, "atom1_serNum": 67412, "atom2_serNum": 67425, "donAcc_type": "standard", "distance": 3.059, "atom1_id": "///I/30/O", "atom2_id": "///I/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6363, "atom1_serNum": 67544, "atom2_serNum": 67787, "donAcc_type": "questionable", "distance": 2.850, "atom1_id": "///I/73/O", "atom2_id": "///I/106/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6364, "atom1_serNum": 67562, "atom2_serNum": 67800, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///I/75/N", "atom2_id": "///I/108/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6365, "atom1_serNum": 67565, "atom2_serNum": 67808, "donAcc_type": "standard", "distance": 2.546, "atom1_id": "///I/75/O", "atom2_id": "///I/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6366, "atom1_serNum": 67574, "atom2_serNum": 67811, "donAcc_type": "standard", "distance": 3.356, "atom1_id": "///I/77/N", "atom2_id": "///I/110/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6367, "atom1_serNum": 67577, "atom2_serNum": 67825, "donAcc_type": "standard", "distance": 3.120, "atom1_id": "///I/77/O", "atom2_id": "///I/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6368, "atom1_serNum": 67584, "atom2_serNum": 67605, "donAcc_type": "standard", "distance": 2.831, "atom1_id": "///I/78/O", "atom2_id": "///I/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6369, "atom1_serNum": 67584, "atom2_serNum": 67614, "donAcc_type": "standard", "distance": 3.004, "atom1_id": "///I/78/O", "atom2_id": "///I/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6370, "atom1_serNum": 67589, "atom2_serNum": 67840, "donAcc_type": "standard", "distance": 3.435, "atom1_id": "///I/79/N", "atom2_id": "///I/114/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6371, "atom1_serNum": 67592, "atom2_serNum": 67619, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///I/79/O", "atom2_id": "///I/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6372, "atom1_serNum": 67592, "atom2_serNum": 67626, "donAcc_type": "standard", "distance": 2.569, "atom1_id": "///I/79/O", "atom2_id": "///I/83/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6373, "atom1_serNum": 67625, "atom2_serNum": 67866, "donAcc_type": "standard", "distance": 3.217, "atom1_id": "///I/83/OD1", "atom2_id": "///I/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6374, "atom1_serNum": 67626, "atom2_serNum": 67852, "donAcc_type": "standard", "distance": 2.773, "atom1_id": "///I/83/ND2", "atom2_id": "///I/116/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6375, "atom1_serNum": 67630, "atom2_serNum": 67647, "donAcc_type": "standard", "distance": 3.368, "atom1_id": "///I/84/O", "atom2_id": "///I/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6376, "atom1_serNum": 67630, "atom2_serNum": 67883, "donAcc_type": "standard", "distance": 2.659, "atom1_id": "///I/84/O", "atom2_id": "///I/119/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6377, "atom1_serNum": 67647, "atom2_serNum": 67883, "donAcc_type": "questionable", "distance": 3.210, "atom1_id": "///I/87/N", "atom2_id": "///I/119/NZ", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6378, "atom1_serNum": 67659, "atom2_serNum": 67901, "donAcc_type": "standard", "distance": 2.672, "atom1_id": "///I/89/O", "atom2_id": "///I/122/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6379, "atom1_serNum": 67670, "atom2_serNum": 67679, "donAcc_type": "standard", "distance": 2.777, "atom1_id": "///I/90/OE1", "atom2_id": "///I/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6380, "atom1_serNum": 67670, "atom2_serNum": 67684, "donAcc_type": "acceptable", "distance": 2.517, "atom1_id": "///I/90/OE1", "atom2_id": "///I/92/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6381, "atom1_serNum": 67675, "atom2_serNum": 67915, "donAcc_type": "standard", "distance": 3.361, "atom1_id": "///I/91/O", "atom2_id": "///I/124/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6382, "atom1_serNum": 67682, "atom2_serNum": 67702, "donAcc_type": "standard", "distance": 2.755, "atom1_id": "///I/92/O", "atom2_id": "///I/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6383, "atom1_serNum": 67682, "atom2_serNum": 67710, "donAcc_type": "standard", "distance": 3.112, "atom1_id": "///I/92/O", "atom2_id": "///I/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6384, "atom1_serNum": 67689, "atom2_serNum": 67718, "donAcc_type": "standard", "distance": 2.924, "atom1_id": "///I/93/O", "atom2_id": "///I/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6385, "atom1_serNum": 67696, "atom2_serNum": 67726, "donAcc_type": "standard", "distance": 2.972, "atom1_id": "///I/94/O", "atom2_id": "///I/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6386, "atom1_serNum": 67705, "atom2_serNum": 67735, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///I/95/O", "atom2_id": "///I/99/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6387, "atom1_serNum": 67713, "atom2_serNum": 67742, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///I/96/O", "atom2_id": "///I/100/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6388, "atom1_serNum": 67713, "atom2_serNum": 67746, "donAcc_type": "standard", "distance": 3.205, "atom1_id": "///I/96/O", "atom2_id": "///I/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6389, "atom1_serNum": 67784, "atom2_serNum": 67790, "donAcc_type": "standard", "distance": 2.617, "atom1_id": "///I/106/N", "atom2_id": "///I/106/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6390, "atom1_serNum": 67787, "atom2_serNum": 67800, "donAcc_type": "questionable", "distance": 3.043, "atom1_id": "///I/106/O", "atom2_id": "///I/108/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6391, "atom1_serNum": 67801, "atom2_serNum": 67935, "donAcc_type": "standard", "distance": 2.746, "atom1_id": "///I/109/N", "atom2_id": "///I/126/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6392, "atom1_serNum": 67804, "atom2_serNum": 67929, "donAcc_type": "standard", "distance": 3.369, "atom1_id": "///I/109/O", "atom2_id": "///I/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6393, "atom1_serNum": 67804, "atom2_serNum": 67937, "donAcc_type": "standard", "distance": 3.476, "atom1_id": "///I/109/O", "atom2_id": "///I/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6394, "atom1_serNum": 67817, "atom2_serNum": 67940, "donAcc_type": "standard", "distance": 3.247, "atom1_id": "///I/111/N", "atom2_id": "///I/127/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6395, "atom1_serNum": 67906, "atom2_serNum": 68020, "donAcc_type": "acceptable", "distance": 2.524, "atom1_id": "///I/122/OG1", "atom2_id": "///I/142/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6396, "atom1_serNum": 67908, "atom2_serNum": 68018, "donAcc_type": "standard", "distance": 3.304, "atom1_id": "///I/123/N", "atom2_id": "///I/142/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6397, "atom1_serNum": 67911, "atom2_serNum": 68027, "donAcc_type": "standard", "distance": 3.355, "atom1_id": "///I/123/O", "atom2_id": "///I/144/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6398, "atom1_serNum": 67924, "atom2_serNum": 68030, "donAcc_type": "standard", "distance": 3.638, "atom1_id": "///I/125/N", "atom2_id": "///I/144/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6399, "atom1_serNum": 67927, "atom2_serNum": 68043, "donAcc_type": "standard", "distance": 2.598, "atom1_id": "///I/125/O", "atom2_id": "///I/146/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6400, "atom1_serNum": 67932, "atom2_serNum": 68046, "donAcc_type": "questionable", "distance": 3.073, "atom1_id": "///I/126/O", "atom2_id": "///I/146/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6401, "atom1_serNum": 67956, "atom2_serNum": 67976, "donAcc_type": "standard", "distance": 2.742, "atom1_id": "///I/132/O", "atom2_id": "///I/135/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6402, "atom1_serNum": 67956, "atom2_serNum": 67981, "donAcc_type": "standard", "distance": 3.270, "atom1_id": "///I/132/O", "atom2_id": "///I/136/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6403, "atom1_serNum": 67961, "atom2_serNum": 67988, "donAcc_type": "standard", "distance": 3.430, "atom1_id": "///I/133/O", "atom2_id": "///I/137/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6404, "atom1_serNum": 67970, "atom2_serNum": 67996, "donAcc_type": "questionable", "distance": 2.760, "atom1_id": "///I/134/O", "atom2_id": "///I/137/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6405, "atom1_serNum": 67979, "atom2_serNum": 67997, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///I/135/O", "atom2_id": "///I/138/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6406, "atom1_serNum": 67991, "atom2_serNum": 68002, "donAcc_type": "standard", "distance": 2.669, "atom1_id": "///I/137/O", "atom2_id": "///I/139/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6407, "atom1_serNum": 68084, "atom2_serNum": 68102, "donAcc_type": "standard", "distance": 3.179, "atom1_id": "///J/5/O", "atom2_id": "///J/8/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6408, "atom1_serNum": 68084, "atom2_serNum": 68147, "donAcc_type": "standard", "distance": 2.705, "atom1_id": "///J/5/O", "atom2_id": "///J/13/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6409, "atom1_serNum": 68084, "atom2_serNum": 68150, "donAcc_type": "standard", "distance": 2.769, "atom1_id": "///J/5/O", "atom2_id": "///J/13/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6410, "atom1_serNum": 68112, "atom2_serNum": 68339, "donAcc_type": "questionable", "distance": 2.931, "atom1_id": "///J/8/NH2", "atom2_id": "///J/36/NH2", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6411, "atom1_serNum": 68116, "atom2_serNum": 68140, "donAcc_type": "standard", "distance": 2.580, "atom1_id": "///J/9/O", "atom2_id": "///J/13/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6412, "atom1_serNum": 68123, "atom2_serNum": 68151, "donAcc_type": "standard", "distance": 3.230, "atom1_id": "///J/10/O", "atom2_id": "///J/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6413, "atom1_serNum": 68129, "atom2_serNum": 68160, "donAcc_type": "standard", "distance": 3.127, "atom1_id": "///J/11/O", "atom2_id": "///J/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6414, "atom1_serNum": 68134, "atom2_serNum": 68165, "donAcc_type": "standard", "distance": 2.957, "atom1_id": "///J/12/O", "atom2_id": "///J/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6415, "atom1_serNum": 68143, "atom2_serNum": 68173, "donAcc_type": "standard", "distance": 3.129, "atom1_id": "///J/13/O", "atom2_id": "///J/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6416, "atom1_serNum": 68154, "atom2_serNum": 68181, "donAcc_type": "standard", "distance": 2.967, "atom1_id": "///J/14/O", "atom2_id": "///J/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6417, "atom1_serNum": 68163, "atom2_serNum": 68192, "donAcc_type": "standard", "distance": 2.782, "atom1_id": "///J/15/O", "atom2_id": "///J/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6418, "atom1_serNum": 68168, "atom2_serNum": 68200, "donAcc_type": "standard", "distance": 3.049, "atom1_id": "///J/16/O", "atom2_id": "///J/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6419, "atom1_serNum": 68176, "atom2_serNum": 68208, "donAcc_type": "standard", "distance": 3.060, "atom1_id": "///J/17/O", "atom2_id": "///J/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6420, "atom1_serNum": 68176, "atom2_serNum": 68213, "donAcc_type": "acceptable", "distance": 2.834, "atom1_id": "///J/17/O", "atom2_id": "///J/21/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6421, "atom1_serNum": 68184, "atom2_serNum": 68215, "donAcc_type": "standard", "distance": 3.134, "atom1_id": "///J/18/O", "atom2_id": "///J/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6422, "atom1_serNum": 68188, "atom2_serNum": 68551, "donAcc_type": "standard", "distance": 3.010, "atom1_id": "///J/18/NE", "atom2_id": "///J/65/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6423, "atom1_serNum": 68195, "atom2_serNum": 68222, "donAcc_type": "standard", "distance": 2.994, "atom1_id": "///J/19/O", "atom2_id": "///J/23/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6424, "atom1_serNum": 68203, "atom2_serNum": 68230, "donAcc_type": "standard", "distance": 2.576, "atom1_id": "///J/20/O", "atom2_id": "///J/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6425, "atom1_serNum": 68211, "atom2_serNum": 68238, "donAcc_type": "standard", "distance": 3.079, "atom1_id": "///J/21/O", "atom2_id": "///J/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6426, "atom1_serNum": 68213, "atom2_serNum": 68559, "donAcc_type": "acceptable", "distance": 3.699, "atom1_id": "///J/21/OG1", "atom2_id": "///J/65/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6427, "atom1_serNum": 68218, "atom2_serNum": 68246, "donAcc_type": "standard", "distance": 3.154, "atom1_id": "///J/22/O", "atom2_id": "///J/26/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6428, "atom1_serNum": 68220, "atom2_serNum": 68568, "donAcc_type": "acceptable", "distance": 3.237, "atom1_id": "///J/22/OG1", "atom2_id": "///J/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6429, "atom1_serNum": 68225, "atom2_serNum": 68254, "donAcc_type": "standard", "distance": 3.241, "atom1_id": "///J/23/O", "atom2_id": "///J/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6430, "atom1_serNum": 68233, "atom2_serNum": 68262, "donAcc_type": "standard", "distance": 2.623, "atom1_id": "///J/24/O", "atom2_id": "///J/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6431, "atom1_serNum": 68241, "atom2_serNum": 68685, "donAcc_type": "standard", "distance": 3.759, "atom1_id": "///J/25/O", "atom2_id": "///J/82/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6432, "atom1_serNum": 68257, "atom2_serNum": 68271, "donAcc_type": "standard", "distance": 2.683, "atom1_id": "///J/27/O", "atom2_id": "///J/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6433, "atom1_serNum": 68265, "atom2_serNum": 68970, "donAcc_type": "standard", "distance": 3.296, "atom1_id": "///J/28/O", "atom2_id": "///J/119/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6434, "atom1_serNum": 68270, "atom2_serNum": 68969, "donAcc_type": "questionable", "distance": 3.303, "atom1_id": "///J/28/OE2", "atom2_id": "///J/118/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6435, "atom1_serNum": 68282, "atom2_serNum": 68956, "donAcc_type": "standard", "distance": 3.076, "atom1_id": "///J/30/N", "atom2_id": "///J/117/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6436, "atom1_serNum": 68285, "atom2_serNum": 68953, "donAcc_type": "standard", "distance": 2.752, "atom1_id": "///J/30/O", "atom2_id": "///J/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6437, "atom1_serNum": 68299, "atom2_serNum": 68943, "donAcc_type": "standard", "distance": 2.881, "atom1_id": "///J/32/N", "atom2_id": "///J/115/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6438, "atom1_serNum": 68302, "atom2_serNum": 68940, "donAcc_type": "standard", "distance": 2.792, "atom1_id": "///J/32/O", "atom2_id": "///J/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6439, "atom1_serNum": 68309, "atom2_serNum": 68340, "donAcc_type": "standard", "distance": 3.139, "atom1_id": "///J/33/O", "atom2_id": "///J/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6440, "atom1_serNum": 68311, "atom2_serNum": 68327, "donAcc_type": "acceptable", "distance": 3.210, "atom1_id": "///J/33/OG1", "atom2_id": "///J/35/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6441, "atom1_serNum": 68311, "atom2_serNum": 68329, "donAcc_type": "acceptable", "distance": 3.127, "atom1_id": "///J/33/OG1", "atom2_id": "///J/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6442, "atom1_serNum": 68313, "atom2_serNum": 68928, "donAcc_type": "standard", "distance": 3.251, "atom1_id": "///J/34/N", "atom2_id": "///J/113/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6443, "atom1_serNum": 68316, "atom2_serNum": 68345, "donAcc_type": "standard", "distance": 3.185, "atom1_id": "///J/34/O", "atom2_id": "///J/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6444, "atom1_serNum": 68325, "atom2_serNum": 68350, "donAcc_type": "standard", "distance": 3.120, "atom1_id": "///J/35/O", "atom2_id": "///J/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6445, "atom1_serNum": 68332, "atom2_serNum": 68355, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///J/36/O", "atom2_id": "///J/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6446, "atom1_serNum": 68343, "atom2_serNum": 68363, "donAcc_type": "standard", "distance": 2.889, "atom1_id": "///J/37/O", "atom2_id": "///J/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6447, "atom1_serNum": 68358, "atom2_serNum": 68387, "donAcc_type": "standard", "distance": 3.021, "atom1_id": "///J/40/O", "atom2_id": "///J/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6448, "atom1_serNum": 68366, "atom2_serNum": 68394, "donAcc_type": "standard", "distance": 2.995, "atom1_id": "///J/41/O", "atom2_id": "///J/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6449, "atom1_serNum": 68377, "atom2_serNum": 68403, "donAcc_type": "standard", "distance": 3.041, "atom1_id": "///J/42/O", "atom2_id": "///J/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6450, "atom1_serNum": 68383, "atom2_serNum": 68412, "donAcc_type": "standard", "distance": 3.021, "atom1_id": "///J/43/O", "atom2_id": "///J/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6451, "atom1_serNum": 68390, "atom2_serNum": 68420, "donAcc_type": "standard", "distance": 2.814, "atom1_id": "///J/44/O", "atom2_id": "///J/48/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6452, "atom1_serNum": 68397, "atom2_serNum": 68428, "donAcc_type": "standard", "distance": 2.959, "atom1_id": "///J/45/O", "atom2_id": "///J/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6453, "atom1_serNum": 68402, "atom2_serNum": 68804, "donAcc_type": "standard", "distance": 3.019, "atom1_id": "///J/45/OE2", "atom2_id": "///J/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6454, "atom1_serNum": 68402, "atom2_serNum": 68808, "donAcc_type": "standard", "distance": 3.620, "atom1_id": "///J/45/OE2", "atom2_id": "///J/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6455, "atom1_serNum": 68406, "atom2_serNum": 68433, "donAcc_type": "acceptable", "distance": 2.554, "atom1_id": "///J/46/O", "atom2_id": "///J/49/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6456, "atom1_serNum": 68406, "atom2_serNum": 68435, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///J/46/O", "atom2_id": "///J/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6457, "atom1_serNum": 68415, "atom2_serNum": 68443, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///J/47/O", "atom2_id": "///J/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6458, "atom1_serNum": 68431, "atom2_serNum": 68447, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///J/49/O", "atom2_id": "///J/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6459, "atom1_serNum": 68438, "atom2_serNum": 68456, "donAcc_type": "standard", "distance": 2.983, "atom1_id": "///J/50/O", "atom2_id": "///J/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6460, "atom1_serNum": 68459, "atom2_serNum": 68471, "donAcc_type": "standard", "distance": 3.061, "atom1_id": "///J/53/O", "atom2_id": "///J/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6461, "atom1_serNum": 68466, "atom2_serNum": 68478, "donAcc_type": "standard", "distance": 3.239, "atom1_id": "///J/53/NH2", "atom2_id": "///J/55/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6462, "atom1_serNum": 68474, "atom2_serNum": 68502, "donAcc_type": "standard", "distance": 3.035, "atom1_id": "///J/55/O", "atom2_id": "///J/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6463, "atom1_serNum": 68477, "atom2_serNum": 68487, "donAcc_type": "standard", "distance": 2.800, "atom1_id": "///J/55/OD1", "atom2_id": "///J/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6464, "atom1_serNum": 68477, "atom2_serNum": 68497, "donAcc_type": "standard", "distance": 2.438, "atom1_id": "///J/55/OD1", "atom2_id": "///J/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6465, "atom1_serNum": 68482, "atom2_serNum": 68513, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///J/56/O", "atom2_id": "///J/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6466, "atom1_serNum": 68490, "atom2_serNum": 68524, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///J/57/O", "atom2_id": "///J/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6467, "atom1_serNum": 68500, "atom2_serNum": 68533, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///J/58/O", "atom2_id": "///J/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6468, "atom1_serNum": 68505, "atom2_serNum": 68538, "donAcc_type": "standard", "distance": 2.904, "atom1_id": "///J/59/O", "atom2_id": "///J/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6469, "atom1_serNum": 68516, "atom2_serNum": 68543, "donAcc_type": "standard", "distance": 3.366, "atom1_id": "///J/60/O", "atom2_id": "///J/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6470, "atom1_serNum": 68536, "atom2_serNum": 68548, "donAcc_type": "standard", "distance": 3.209, "atom1_id": "///J/62/O", "atom2_id": "///J/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6471, "atom1_serNum": 68536, "atom2_serNum": 68560, "donAcc_type": "standard", "distance": 3.302, "atom1_id": "///J/62/O", "atom2_id": "///J/66/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6472, "atom1_serNum": 68571, "atom2_serNum": 68587, "donAcc_type": "standard", "distance": 3.371, "atom1_id": "///J/67/O", "atom2_id": "///J/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6473, "atom1_serNum": 68599, "atom2_serNum": 68641, "donAcc_type": "standard", "distance": 2.575, "atom1_id": "///J/71/N", "atom2_id": "///J/77/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6474, "atom1_serNum": 68604, "atom2_serNum": 68641, "donAcc_type": "standard", "distance": 3.374, "atom1_id": "///J/72/N", "atom2_id": "///J/77/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6475, "atom1_serNum": 68610, "atom2_serNum": 68612, "donAcc_type": "standard", "distance": 2.670, "atom1_id": "///J/72/OD1", "atom2_id": "///J/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6476, "atom1_serNum": 68610, "atom2_serNum": 68617, "donAcc_type": "standard", "distance": 2.815, "atom1_id": "///J/72/OD1", "atom2_id": "///J/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6477, "atom1_serNum": 68647, "atom2_serNum": 68675, "donAcc_type": "standard", "distance": 2.679, "atom1_id": "///J/78/N", "atom2_id": "///J/81/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6478, "atom1_serNum": 68650, "atom2_serNum": 68677, "donAcc_type": "standard", "distance": 3.243, "atom1_id": "///J/78/O", "atom2_id": "///J/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6479, "atom1_serNum": 68653, "atom2_serNum": 68660, "donAcc_type": "standard", "distance": 2.810, "atom1_id": "///J/78/OD1", "atom2_id": "///J/80/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6480, "atom1_serNum": 68653, "atom2_serNum": 68668, "donAcc_type": "standard", "distance": 2.601, "atom1_id": "///J/78/OD1", "atom2_id": "///J/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6481, "atom1_serNum": 68654, "atom2_serNum": 68676, "donAcc_type": "standard", "distance": 2.790, "atom1_id": "///J/78/OD2", "atom2_id": "///J/81/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6482, "atom1_serNum": 68658, "atom2_serNum": 68686, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///J/79/O", "atom2_id": "///J/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6483, "atom1_serNum": 68663, "atom2_serNum": 68694, "donAcc_type": "standard", "distance": 3.027, "atom1_id": "///J/80/O", "atom2_id": "///J/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6484, "atom1_serNum": 68671, "atom2_serNum": 68705, "donAcc_type": "standard", "distance": 3.058, "atom1_id": "///J/81/O", "atom2_id": "///J/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6485, "atom1_serNum": 68680, "atom2_serNum": 68705, "donAcc_type": "standard", "distance": 3.025, "atom1_id": "///J/82/O", "atom2_id": "///J/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6486, "atom1_serNum": 68680, "atom2_serNum": 68711, "donAcc_type": "standard", "distance": 2.724, "atom1_id": "///J/82/O", "atom2_id": "///J/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6487, "atom1_serNum": 68680, "atom2_serNum": 68719, "donAcc_type": "standard", "distance": 3.419, "atom1_id": "///J/82/O", "atom2_id": "///J/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6488, "atom1_serNum": 68689, "atom2_serNum": 68727, "donAcc_type": "standard", "distance": 3.349, "atom1_id": "///J/83/O", "atom2_id": "///J/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6489, "atom1_serNum": 68708, "atom2_serNum": 68732, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///J/85/O", "atom2_id": "///J/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6490, "atom1_serNum": 68708, "atom2_serNum": 68737, "donAcc_type": "acceptable", "distance": 2.755, "atom1_id": "///J/85/O", "atom2_id": "///J/89/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6491, "atom1_serNum": 68714, "atom2_serNum": 68737, "donAcc_type": "acceptable", "distance": 2.579, "atom1_id": "///J/86/O", "atom2_id": "///J/89/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6492, "atom1_serNum": 68714, "atom2_serNum": 68739, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///J/86/O", "atom2_id": "///J/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6493, "atom1_serNum": 68722, "atom2_serNum": 68750, "donAcc_type": "standard", "distance": 3.195, "atom1_id": "///J/87/O", "atom2_id": "///J/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6494, "atom1_serNum": 68735, "atom2_serNum": 68770, "donAcc_type": "questionable", "distance": 2.723, "atom1_id": "///J/89/O", "atom2_id": "///J/92/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6495, "atom1_serNum": 68761, "atom2_serNum": 68973, "donAcc_type": "acceptable", "distance": 3.222, "atom1_id": "///J/91/OH", "atom2_id": "///J/119/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6496, "atom1_serNum": 68783, "atom2_serNum": 68819, "donAcc_type": "acceptable", "distance": 2.903, "atom1_id": "///J/94/O", "atom2_id": "///J/98/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6497, "atom1_serNum": 68800, "atom2_serNum": 68819, "donAcc_type": "acceptable", "distance": 2.991, "atom1_id": "///J/96/N", "atom2_id": "///J/98/OH", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6498, "atom1_serNum": 68811, "atom2_serNum": 68978, "donAcc_type": "standard", "distance": 2.603, "atom1_id": "///J/98/O", "atom2_id": "///J/120/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6499, "atom1_serNum": 68827, "atom2_serNum": 68964, "donAcc_type": "standard", "distance": 3.235, "atom1_id": "///J/100/N", "atom2_id": "///J/118/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6500, "atom1_serNum": 68830, "atom2_serNum": 68961, "donAcc_type": "standard", "distance": 3.507, "atom1_id": "///J/100/O", "atom2_id": "///J/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6501, "atom1_serNum": 68846, "atom2_serNum": 68948, "donAcc_type": "standard", "distance": 3.495, "atom1_id": "///J/102/N", "atom2_id": "///J/116/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6502, "atom1_serNum": 68849, "atom2_serNum": 68945, "donAcc_type": "standard", "distance": 3.351, "atom1_id": "///J/102/O", "atom2_id": "///J/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6503, "atom1_serNum": 68857, "atom2_serNum": 75432, "donAcc_type": "standard", "distance": 3.180, "atom1_id": "///J/103/O", "atom2_id": "///T/42/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6504, "atom1_serNum": 68863, "atom2_serNum": 68935, "donAcc_type": "standard", "distance": 3.206, "atom1_id": "///J/104/N", "atom2_id": "///J/114/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6505, "atom1_serNum": 68874, "atom2_serNum": 68932, "donAcc_type": "standard", "distance": 3.422, "atom1_id": "///J/105/O", "atom2_id": "///J/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6506, "atom1_serNum": 68882, "atom2_serNum": 68923, "donAcc_type": "standard", "distance": 3.090, "atom1_id": "///J/107/N", "atom2_id": "///J/112/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6507, "atom1_serNum": 68885, "atom2_serNum": 68916, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///J/107/O", "atom2_id": "///J/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6508, "atom1_serNum": 68889, "atom2_serNum": 68914, "donAcc_type": "standard", "distance": 2.799, "atom1_id": "///J/107/NE", "atom2_id": "///J/110/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6509, "atom1_serNum": 68892, "atom2_serNum": 68915, "donAcc_type": "standard", "distance": 3.524, "atom1_id": "///J/107/NH2", "atom2_id": "///J/110/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6510, "atom1_serNum": 68914, "atom2_serNum": 68920, "donAcc_type": "standard", "distance": 3.389, "atom1_id": "///J/110/OD1", "atom2_id": "///J/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6511, "atom1_serNum": 68923, "atom2_serNum": 68932, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///J/112/O", "atom2_id": "///J/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6512, "atom1_serNum": 68989, "atom2_serNum": 69025, "donAcc_type": "questionable", "distance": 2.739, "atom1_id": "///K/5/O", "atom2_id": "///K/9/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6513, "atom1_serNum": 68998, "atom2_serNum": 69026, "donAcc_type": "standard", "distance": 2.469, "atom1_id": "///K/6/O", "atom2_id": "///K/10/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6514, "atom1_serNum": 69007, "atom2_serNum": 69034, "donAcc_type": "standard", "distance": 2.805, "atom1_id": "///K/7/O", "atom2_id": "///K/11/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6515, "atom1_serNum": 69015, "atom2_serNum": 69039, "donAcc_type": "standard", "distance": 2.783, "atom1_id": "///K/8/O", "atom2_id": "///K/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6516, "atom1_serNum": 69017, "atom2_serNum": 69025, "donAcc_type": "standard", "distance": 2.545, "atom1_id": "///K/9/N", "atom2_id": "///K/9/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6517, "atom1_serNum": 69020, "atom2_serNum": 69039, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///K/9/O", "atom2_id": "///K/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6518, "atom1_serNum": 69020, "atom2_serNum": 69044, "donAcc_type": "standard", "distance": 2.763, "atom1_id": "///K/9/O", "atom2_id": "///K/13/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6519, "atom1_serNum": 69042, "atom2_serNum": 69062, "donAcc_type": "standard", "distance": 3.104, "atom1_id": "///K/12/O", "atom2_id": "///K/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6520, "atom1_serNum": 69047, "atom2_serNum": 69071, "donAcc_type": "standard", "distance": 3.163, "atom1_id": "///K/13/O", "atom2_id": "///K/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6521, "atom1_serNum": 69079, "atom2_serNum": 69575, "donAcc_type": "acceptable", "distance": 3.541, "atom1_id": "///K/17/N", "atom2_id": "///K/80/ND1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6522, "atom1_serNum": 69088, "atom2_serNum": 69572, "donAcc_type": "standard", "distance": 2.993, "atom1_id": "///K/17/NH1", "atom2_id": "///K/80/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6523, "atom1_serNum": 69089, "atom2_serNum": 69582, "donAcc_type": "standard", "distance": 3.330, "atom1_id": "///K/17/NH2", "atom2_id": "///K/81/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6524, "atom1_serNum": 69093, "atom2_serNum": 69105, "donAcc_type": "standard", "distance": 2.853, "atom1_id": "///K/18/O", "atom2_id": "///K/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6525, "atom1_serNum": 69150, "atom2_serNum": 69158, "donAcc_type": "standard", "distance": 3.101, "atom1_id": "///K/25/O", "atom2_id": "///K/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6526, "atom1_serNum": 69157, "atom2_serNum": 69678, "donAcc_type": "standard", "distance": 2.861, "atom1_id": "///K/26/O", "atom2_id": "///K/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6527, "atom1_serNum": 69161, "atom2_serNum": 69344, "donAcc_type": "standard", "distance": 3.385, "atom1_id": "///K/27/O", "atom2_id": "///K/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6528, "atom1_serNum": 69163, "atom2_serNum": 69658, "donAcc_type": "standard", "distance": 3.387, "atom1_id": "///K/28/N", "atom2_id": "///K/91/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6529, "atom1_serNum": 69166, "atom2_serNum": 69168, "donAcc_type": "acceptable", "distance": 2.828, "atom1_id": "///K/28/O", "atom2_id": "///K/28/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6530, "atom1_serNum": 69166, "atom2_serNum": 69648, "donAcc_type": "standard", "distance": 3.042, "atom1_id": "///K/28/O", "atom2_id": "///K/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6531, "atom1_serNum": 69168, "atom2_serNum": 69655, "donAcc_type": "acceptable", "distance": 3.192, "atom1_id": "///K/28/OG1", "atom2_id": "///K/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6532, "atom1_serNum": 69170, "atom2_serNum": 69336, "donAcc_type": "standard", "distance": 3.281, "atom1_id": "///K/29/N", "atom2_id": "///K/48/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6533, "atom1_serNum": 69173, "atom2_serNum": 69333, "donAcc_type": "standard", "distance": 3.640, "atom1_id": "///K/29/O", "atom2_id": "///K/48/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6534, "atom1_serNum": 69178, "atom2_serNum": 69635, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///K/30/N", "atom2_id": "///K/88/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6535, "atom1_serNum": 69181, "atom2_serNum": 69632, "donAcc_type": "standard", "distance": 3.380, "atom1_id": "///K/30/O", "atom2_id": "///K/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6536, "atom1_serNum": 69185, "atom2_serNum": 69332, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///K/30/NE", "atom2_id": "///K/47/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6537, "atom1_serNum": 69192, "atom2_serNum": 69313, "donAcc_type": "standard", "distance": 3.028, "atom1_id": "///K/31/O", "atom2_id": "///K/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6538, "atom1_serNum": 69196, "atom2_serNum": 69618, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///K/32/N", "atom2_id": "///K/86/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6539, "atom1_serNum": 69199, "atom2_serNum": 69610, "donAcc_type": "standard", "distance": 2.843, "atom1_id": "///K/32/O", "atom2_id": "///K/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6540, "atom1_serNum": 69199, "atom2_serNum": 69615, "donAcc_type": "standard", "distance": 3.754, "atom1_id": "///K/32/O", "atom2_id": "///K/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6541, "atom1_serNum": 69202, "atom2_serNum": 69618, "donAcc_type": "acceptable", "distance": 3.126, "atom1_id": "///K/32/ND1", "atom2_id": "///K/86/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6542, "atom1_serNum": 69202, "atom2_serNum": 69639, "donAcc_type": "acceptable", "distance": 3.597, "atom1_id": "///K/32/ND1", "atom2_id": "///K/88/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6543, "atom1_serNum": 69206, "atom2_serNum": 69299, "donAcc_type": "standard", "distance": 2.989, "atom1_id": "///K/33/N", "atom2_id": "///K/44/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6544, "atom1_serNum": 69209, "atom2_serNum": 69296, "donAcc_type": "standard", "distance": 3.289, "atom1_id": "///K/33/O", "atom2_id": "///K/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6545, "atom1_serNum": 69213, "atom2_serNum": 69596, "donAcc_type": "standard", "distance": 3.227, "atom1_id": "///K/34/N", "atom2_id": "///K/83/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6546, "atom1_serNum": 69221, "atom2_serNum": 69276, "donAcc_type": "standard", "distance": 3.568, "atom1_id": "///K/34/NZ", "atom2_id": "///K/41/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6547, "atom1_serNum": 69222, "atom2_serNum": 69280, "donAcc_type": "standard", "distance": 3.120, "atom1_id": "///K/35/N", "atom2_id": "///K/42/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6548, "atom1_serNum": 69225, "atom2_serNum": 69275, "donAcc_type": "questionable", "distance": 2.966, "atom1_id": "///K/35/O", "atom2_id": "///K/41/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6549, "atom1_serNum": 69236, "atom2_serNum": 69260, "donAcc_type": "standard", "distance": 3.700, "atom1_id": "///K/37/N", "atom2_id": "///K/40/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6550, "atom1_serNum": 69249, "atom2_serNum": 69255, "donAcc_type": "standard", "distance": 2.724, "atom1_id": "///K/39/N", "atom2_id": "///K/39/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6551, "atom1_serNum": 69256, "atom2_serNum": 69266, "donAcc_type": "questionable", "distance": 3.252, "atom1_id": "///K/39/ND2", "atom2_id": "///K/40/NH1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6552, "atom1_serNum": 69337, "atom2_serNum": 69456, "donAcc_type": "standard", "distance": 3.448, "atom1_id": "///K/49/N", "atom2_id": "///K/65/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6553, "atom1_serNum": 69340, "atom2_serNum": 69453, "donAcc_type": "standard", "distance": 2.974, "atom1_id": "///K/49/O", "atom2_id": "///K/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6554, "atom1_serNum": 69351, "atom2_serNum": 69442, "donAcc_type": "standard", "distance": 3.167, "atom1_id": "///K/51/N", "atom2_id": "///K/63/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6555, "atom1_serNum": 69354, "atom2_serNum": 69726, "donAcc_type": "standard", "distance": 3.353, "atom1_id": "///K/51/O", "atom2_id": "///K/100/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6556, "atom1_serNum": 69362, "atom2_serNum": 69439, "donAcc_type": "standard", "distance": 3.502, "atom1_id": "///K/52/O", "atom2_id": "///K/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6557, "atom1_serNum": 69378, "atom2_serNum": 69421, "donAcc_type": "standard", "distance": 3.566, "atom1_id": "///K/54/O", "atom2_id": "///K/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6558, "atom1_serNum": 69397, "atom2_serNum": 69419, "donAcc_type": "questionable", "distance": 2.599, "atom1_id": "///K/57/O", "atom2_id": "///K/60/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6559, "atom1_serNum": 69415, "atom2_serNum": 69562, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///K/60/O", "atom2_id": "///K/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6560, "atom1_serNum": 69428, "atom2_serNum": 69547, "donAcc_type": "standard", "distance": 3.077, "atom1_id": "///K/62/N", "atom2_id": "///K/77/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6561, "atom1_serNum": 69431, "atom2_serNum": 69544, "donAcc_type": "standard", "distance": 2.724, "atom1_id": "///K/62/O", "atom2_id": "///K/77/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6562, "atom1_serNum": 69449, "atom2_serNum": 69526, "donAcc_type": "standard", "distance": 3.584, "atom1_id": "///K/64/O", "atom2_id": "///K/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6563, "atom1_serNum": 69464, "atom2_serNum": 69517, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///K/66/N", "atom2_id": "///K/73/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6564, "atom1_serNum": 69467, "atom2_serNum": 69514, "donAcc_type": "standard", "distance": 2.652, "atom1_id": "///K/66/O", "atom2_id": "///K/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6565, "atom1_serNum": 69481, "atom2_serNum": 69506, "donAcc_type": "standard", "distance": 2.619, "atom1_id": "///K/68/N", "atom2_id": "///K/71/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6566, "atom1_serNum": 69484, "atom2_serNum": 69503, "donAcc_type": "standard", "distance": 2.719, "atom1_id": "///K/68/O", "atom2_id": "///K/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6567, "atom1_serNum": 69582, "atom2_serNum": 69602, "donAcc_type": "standard", "distance": 3.768, "atom1_id": "///K/81/O", "atom2_id": "///K/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6568, "atom1_serNum": 69584, "atom2_serNum": 69593, "donAcc_type": "acceptable", "distance": 3.258, "atom1_id": "///K/81/OG1", "atom2_id": "///K/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6569, "atom1_serNum": 69664, "atom2_serNum": 69840, "donAcc_type": "standard", "distance": 3.879, "atom1_id": "///K/91/NH1", "atom2_id": "///K/114/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6570, "atom1_serNum": 69669, "atom2_serNum": 69847, "donAcc_type": "standard", "distance": 2.751, "atom1_id": "///K/92/O", "atom2_id": "///K/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6571, "atom1_serNum": 69737, "atom2_serNum": 69773, "donAcc_type": "standard", "distance": 3.611, "atom1_id": "///K/101/O", "atom2_id": "///K/104/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6572, "atom1_serNum": 69749, "atom2_serNum": 69777, "donAcc_type": "standard", "distance": 3.110, "atom1_id": "///K/102/O", "atom2_id": "///K/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6573, "atom1_serNum": 69761, "atom2_serNum": 69789, "donAcc_type": "questionable", "distance": 3.169, "atom1_id": "///K/103/O", "atom2_id": "///K/106/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6574, "atom1_serNum": 69808, "atom2_serNum": 69819, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///K/108/O", "atom2_id": "///K/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6575, "atom1_serNum": 69812, "atom2_serNum": 69824, "donAcc_type": "standard", "distance": 2.794, "atom1_id": "///K/109/O", "atom2_id": "///K/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6576, "atom1_serNum": 69901, "atom2_serNum": 69930, "donAcc_type": "standard", "distance": 3.689, "atom1_id": "///L/8/O", "atom2_id": "///L/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6577, "atom1_serNum": 69908, "atom2_serNum": 69939, "donAcc_type": "standard", "distance": 3.469, "atom1_id": "///L/9/O", "atom2_id": "///L/13/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6578, "atom1_serNum": 69915, "atom2_serNum": 69950, "donAcc_type": "standard", "distance": 2.856, "atom1_id": "///L/10/O", "atom2_id": "///L/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6579, "atom1_serNum": 69922, "atom2_serNum": 69961, "donAcc_type": "standard", "distance": 2.805, "atom1_id": "///L/11/O", "atom2_id": "///L/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6580, "atom1_serNum": 69933, "atom2_serNum": 69966, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///L/12/O", "atom2_id": "///L/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6581, "atom1_serNum": 69942, "atom2_serNum": 69975, "donAcc_type": "standard", "distance": 3.666, "atom1_id": "///L/13/O", "atom2_id": "///L/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6582, "atom1_serNum": 69948, "atom2_serNum": 70099, "donAcc_type": "acceptable", "distance": 3.061, "atom1_id": "///L/13/NH1", "atom2_id": "///L/32/OH", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6583, "atom1_serNum": 69953, "atom2_serNum": 69982, "donAcc_type": "standard", "distance": 3.259, "atom1_id": "///L/14/O", "atom2_id": "///L/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6584, "atom1_serNum": 69964, "atom2_serNum": 69990, "donAcc_type": "standard", "distance": 2.990, "atom1_id": "///L/15/O", "atom2_id": "///L/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6585, "atom1_serNum": 69969, "atom2_serNum": 69995, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///L/16/O", "atom2_id": "///L/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6586, "atom1_serNum": 69978, "atom2_serNum": 69995, "donAcc_type": "standard", "distance": 2.819, "atom1_id": "///L/17/O", "atom2_id": "///L/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6587, "atom1_serNum": 69978, "atom2_serNum": 70003, "donAcc_type": "standard", "distance": 3.487, "atom1_id": "///L/17/O", "atom2_id": "///L/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6588, "atom1_serNum": 69985, "atom2_serNum": 70003, "donAcc_type": "standard", "distance": 3.100, "atom1_id": "///L/18/O", "atom2_id": "///L/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6589, "atom1_serNum": 69993, "atom2_serNum": 70008, "donAcc_type": "standard", "distance": 3.526, "atom1_id": "///L/19/O", "atom2_id": "///L/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6590, "atom1_serNum": 70006, "atom2_serNum": 70021, "donAcc_type": "standard", "distance": 3.601, "atom1_id": "///L/21/O", "atom2_id": "///L/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6591, "atom1_serNum": 70024, "atom2_serNum": 70069, "donAcc_type": "acceptable", "distance": 3.515, "atom1_id": "///L/24/O", "atom2_id": "///L/29/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6592, "atom1_serNum": 70032, "atom2_serNum": 70173, "donAcc_type": "acceptable", "distance": 3.296, "atom1_id": "///L/24/OH", "atom2_id": "///L/42/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6593, "atom1_serNum": 70036, "atom2_serNum": 70054, "donAcc_type": "standard", "distance": 3.348, "atom1_id": "///L/25/O", "atom2_id": "///L/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6594, "atom1_serNum": 70047, "atom2_serNum": 70063, "donAcc_type": "standard", "distance": 3.325, "atom1_id": "///L/26/O", "atom2_id": "///L/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6595, "atom1_serNum": 70047, "atom2_serNum": 70069, "donAcc_type": "acceptable", "distance": 2.612, "atom1_id": "///L/26/O", "atom2_id": "///L/29/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6596, "atom1_serNum": 70051, "atom2_serNum": 70073, "donAcc_type": "standard", "distance": 3.008, "atom1_id": "///L/27/O", "atom2_id": "///L/30/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6597, "atom1_serNum": 70051, "atom2_serNum": 70080, "donAcc_type": "standard", "distance": 3.066, "atom1_id": "///L/27/O", "atom2_id": "///L/31/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6598, "atom1_serNum": 70083, "atom2_serNum": 70116, "donAcc_type": "standard", "distance": 3.133, "atom1_id": "///L/31/O", "atom2_id": "///L/35/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6599, "atom1_serNum": 70091, "atom2_serNum": 70121, "donAcc_type": "standard", "distance": 2.850, "atom1_id": "///L/32/O", "atom2_id": "///L/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6600, "atom1_serNum": 70099, "atom2_serNum": 70128, "donAcc_type": "acceptable", "distance": 3.626, "atom1_id": "///L/32/OH", "atom2_id": "///L/36/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6601, "atom1_serNum": 70103, "atom2_serNum": 70129, "donAcc_type": "standard", "distance": 3.051, "atom1_id": "///L/33/O", "atom2_id": "///L/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6602, "atom1_serNum": 70112, "atom2_serNum": 70138, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///L/34/O", "atom2_id": "///L/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6603, "atom1_serNum": 70119, "atom2_serNum": 70147, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///L/35/O", "atom2_id": "///L/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6604, "atom1_serNum": 70124, "atom2_serNum": 70154, "donAcc_type": "standard", "distance": 2.809, "atom1_id": "///L/36/O", "atom2_id": "///L/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6605, "atom1_serNum": 70132, "atom2_serNum": 70159, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///L/37/O", "atom2_id": "///L/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6606, "atom1_serNum": 70141, "atom2_serNum": 70168, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///L/38/O", "atom2_id": "///L/42/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6607, "atom1_serNum": 70141, "atom2_serNum": 70173, "donAcc_type": "acceptable", "distance": 2.608, "atom1_id": "///L/38/O", "atom2_id": "///L/42/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6608, "atom1_serNum": 70150, "atom2_serNum": 70174, "donAcc_type": "standard", "distance": 3.245, "atom1_id": "///L/39/O", "atom2_id": "///L/43/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6609, "atom1_serNum": 70157, "atom2_serNum": 70178, "donAcc_type": "standard", "distance": 3.413, "atom1_id": "///L/40/O", "atom2_id": "///L/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6610, "atom1_serNum": 70162, "atom2_serNum": 70178, "donAcc_type": "standard", "distance": 2.765, "atom1_id": "///L/41/O", "atom2_id": "///L/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6611, "atom1_serNum": 70162, "atom2_serNum": 70186, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///L/41/O", "atom2_id": "///L/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6612, "atom1_serNum": 70171, "atom2_serNum": 70186, "donAcc_type": "standard", "distance": 2.835, "atom1_id": "///L/42/O", "atom2_id": "///L/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6613, "atom1_serNum": 70171, "atom2_serNum": 70198, "donAcc_type": "standard", "distance": 2.810, "atom1_id": "///L/42/O", "atom2_id": "///L/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6614, "atom1_serNum": 70177, "atom2_serNum": 70203, "donAcc_type": "standard", "distance": 3.103, "atom1_id": "///L/43/O", "atom2_id": "///L/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6615, "atom1_serNum": 70181, "atom2_serNum": 70214, "donAcc_type": "standard", "distance": 3.552, "atom1_id": "///L/44/O", "atom2_id": "///L/48/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6616, "atom1_serNum": 70185, "atom2_serNum": 71306, "donAcc_type": "standard", "distance": 3.155, "atom1_id": "///L/44/ND2", "atom2_id": "///M/76/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6617, "atom1_serNum": 70189, "atom2_serNum": 70225, "donAcc_type": "standard", "distance": 2.898, "atom1_id": "///L/45/O", "atom2_id": "///L/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6618, "atom1_serNum": 70201, "atom2_serNum": 70230, "donAcc_type": "standard", "distance": 2.847, "atom1_id": "///L/46/O", "atom2_id": "///L/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6619, "atom1_serNum": 70206, "atom2_serNum": 70241, "donAcc_type": "standard", "distance": 3.484, "atom1_id": "///L/47/O", "atom2_id": "///L/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6620, "atom1_serNum": 70217, "atom2_serNum": 70241, "donAcc_type": "standard", "distance": 3.235, "atom1_id": "///L/48/O", "atom2_id": "///L/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6621, "atom1_serNum": 70217, "atom2_serNum": 70252, "donAcc_type": "standard", "distance": 3.242, "atom1_id": "///L/48/O", "atom2_id": "///L/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6622, "atom1_serNum": 70228, "atom2_serNum": 70257, "donAcc_type": "standard", "distance": 3.110, "atom1_id": "///L/49/O", "atom2_id": "///L/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6623, "atom1_serNum": 70244, "atom2_serNum": 70266, "donAcc_type": "standard", "distance": 2.858, "atom1_id": "///L/51/O", "atom2_id": "///L/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6624, "atom1_serNum": 70244, "atom2_serNum": 70275, "donAcc_type": "standard", "distance": 3.439, "atom1_id": "///L/51/O", "atom2_id": "///L/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6625, "atom1_serNum": 70255, "atom2_serNum": 70275, "donAcc_type": "standard", "distance": 2.600, "atom1_id": "///L/52/O", "atom2_id": "///L/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6626, "atom1_serNum": 70255, "atom2_serNum": 70286, "donAcc_type": "standard", "distance": 2.611, "atom1_id": "///L/52/O", "atom2_id": "///L/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6627, "atom1_serNum": 70260, "atom2_serNum": 70286, "donAcc_type": "standard", "distance": 3.235, "atom1_id": "///L/53/O", "atom2_id": "///L/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6628, "atom1_serNum": 70260, "atom2_serNum": 70294, "donAcc_type": "standard", "distance": 3.087, "atom1_id": "///L/53/O", "atom2_id": "///L/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6629, "atom1_serNum": 70269, "atom2_serNum": 70305, "donAcc_type": "standard", "distance": 3.582, "atom1_id": "///L/54/O", "atom2_id": "///L/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6630, "atom1_serNum": 70289, "atom2_serNum": 70316, "donAcc_type": "standard", "distance": 2.986, "atom1_id": "///L/56/O", "atom2_id": "///L/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6631, "atom1_serNum": 70289, "atom2_serNum": 70325, "donAcc_type": "standard", "distance": 3.613, "atom1_id": "///L/56/O", "atom2_id": "///L/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6632, "atom1_serNum": 70297, "atom2_serNum": 70333, "donAcc_type": "standard", "distance": 3.091, "atom1_id": "///L/57/O", "atom2_id": "///L/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6633, "atom1_serNum": 70308, "atom2_serNum": 70333, "donAcc_type": "standard", "distance": 2.867, "atom1_id": "///L/58/O", "atom2_id": "///L/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6634, "atom1_serNum": 70308, "atom2_serNum": 70347, "donAcc_type": "standard", "distance": 2.954, "atom1_id": "///L/58/O", "atom2_id": "///L/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6635, "atom1_serNum": 70319, "atom2_serNum": 70355, "donAcc_type": "standard", "distance": 2.912, "atom1_id": "///L/59/O", "atom2_id": "///L/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6636, "atom1_serNum": 70319, "atom2_serNum": 70360, "donAcc_type": "acceptable", "distance": 3.171, "atom1_id": "///L/59/O", "atom2_id": "///L/63/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6637, "atom1_serNum": 70328, "atom2_serNum": 70360, "donAcc_type": "acceptable", "distance": 2.437, "atom1_id": "///L/60/O", "atom2_id": "///L/63/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6638, "atom1_serNum": 70328, "atom2_serNum": 70362, "donAcc_type": "standard", "distance": 3.008, "atom1_id": "///L/60/O", "atom2_id": "///L/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6639, "atom1_serNum": 70336, "atom2_serNum": 70373, "donAcc_type": "standard", "distance": 2.987, "atom1_id": "///L/61/O", "atom2_id": "///L/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6640, "atom1_serNum": 70350, "atom2_serNum": 70381, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///L/62/O", "atom2_id": "///L/66/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6641, "atom1_serNum": 70358, "atom2_serNum": 70389, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///L/63/O", "atom2_id": "///L/67/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6642, "atom1_serNum": 70365, "atom2_serNum": 70394, "donAcc_type": "standard", "distance": 2.989, "atom1_id": "///L/64/O", "atom2_id": "///L/68/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6643, "atom1_serNum": 70376, "atom2_serNum": 70399, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///L/65/O", "atom2_id": "///L/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6644, "atom1_serNum": 70384, "atom2_serNum": 70404, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///L/66/O", "atom2_id": "///L/70/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6645, "atom1_serNum": 70387, "atom2_serNum": 70411, "donAcc_type": "standard", "distance": 3.139, "atom1_id": "///L/66/OD1", "atom2_id": "///L/70/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6646, "atom1_serNum": 70387, "atom2_serNum": 70414, "donAcc_type": "standard", "distance": 2.751, "atom1_id": "///L/66/OD1", "atom2_id": "///L/70/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6647, "atom1_serNum": 70392, "atom2_serNum": 70415, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///L/67/O", "atom2_id": "///L/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6648, "atom1_serNum": 70397, "atom2_serNum": 70423, "donAcc_type": "standard", "distance": 2.954, "atom1_id": "///L/68/O", "atom2_id": "///L/72/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6649, "atom1_serNum": 70402, "atom2_serNum": 70431, "donAcc_type": "standard", "distance": 2.808, "atom1_id": "///L/69/O", "atom2_id": "///L/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6650, "atom1_serNum": 70402, "atom2_serNum": 70435, "donAcc_type": "standard", "distance": 2.767, "atom1_id": "///L/69/O", "atom2_id": "///L/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6651, "atom1_serNum": 70407, "atom2_serNum": 70431, "donAcc_type": "standard", "distance": 3.005, "atom1_id": "///L/70/O", "atom2_id": "///L/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6652, "atom1_serNum": 70429, "atom2_serNum": 70684, "donAcc_type": "standard", "distance": 2.746, "atom1_id": "///L/72/OD1", "atom2_id": "///L/107/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6653, "atom1_serNum": 70446, "atom2_serNum": 70478, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///L/75/O", "atom2_id": "///L/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6654, "atom1_serNum": 70448, "atom2_serNum": 70466, "donAcc_type": "acceptable", "distance": 3.457, "atom1_id": "///L/75/OG", "atom2_id": "///L/77/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6655, "atom1_serNum": 70452, "atom2_serNum": 70486, "donAcc_type": "standard", "distance": 3.136, "atom1_id": "///L/76/O", "atom2_id": "///L/80/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6656, "atom1_serNum": 70464, "atom2_serNum": 70494, "donAcc_type": "standard", "distance": 3.009, "atom1_id": "///L/77/O", "atom2_id": "///L/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6657, "atom1_serNum": 70470, "atom2_serNum": 70504, "donAcc_type": "standard", "distance": 2.928, "atom1_id": "///L/78/O", "atom2_id": "///L/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6658, "atom1_serNum": 70481, "atom2_serNum": 70508, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///L/79/O", "atom2_id": "///L/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6659, "atom1_serNum": 70489, "atom2_serNum": 70516, "donAcc_type": "standard", "distance": 2.668, "atom1_id": "///L/80/O", "atom2_id": "///L/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6660, "atom1_serNum": 70497, "atom2_serNum": 70525, "donAcc_type": "standard", "distance": 2.996, "atom1_id": "///L/81/O", "atom2_id": "///L/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6661, "atom1_serNum": 70507, "atom2_serNum": 70533, "donAcc_type": "standard", "distance": 2.516, "atom1_id": "///L/82/O", "atom2_id": "///L/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6662, "atom1_serNum": 70507, "atom2_serNum": 70538, "donAcc_type": "acceptable", "distance": 2.373, "atom1_id": "///L/82/O", "atom2_id": "///L/86/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6663, "atom1_serNum": 70511, "atom2_serNum": 70536, "donAcc_type": "questionable", "distance": 2.675, "atom1_id": "///L/83/O", "atom2_id": "///L/86/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6664, "atom1_serNum": 70511, "atom2_serNum": 70538, "donAcc_type": "acceptable", "distance": 3.138, "atom1_id": "///L/83/O", "atom2_id": "///L/86/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6665, "atom1_serNum": 70519, "atom2_serNum": 70543, "donAcc_type": "standard", "distance": 3.934, "atom1_id": "///L/84/O", "atom2_id": "///L/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6666, "atom1_serNum": 70528, "atom2_serNum": 70539, "donAcc_type": "standard", "distance": 3.340, "atom1_id": "///L/85/O", "atom2_id": "///L/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6667, "atom1_serNum": 70528, "atom2_serNum": 70743, "donAcc_type": "standard", "distance": 3.199, "atom1_id": "///L/85/O", "atom2_id": "///L/116/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6668, "atom1_serNum": 70536, "atom2_serNum": 70543, "donAcc_type": "standard", "distance": 2.661, "atom1_id": "///L/86/O", "atom2_id": "///L/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6669, "atom1_serNum": 70536, "atom2_serNum": 70555, "donAcc_type": "questionable", "distance": 2.689, "atom1_id": "///L/86/O", "atom2_id": "///L/89/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6670, "atom1_serNum": 70542, "atom2_serNum": 71110, "donAcc_type": "questionable", "distance": 3.168, "atom1_id": "///L/87/O", "atom2_id": "///M/49/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6671, "atom1_serNum": 70548, "atom2_serNum": 70555, "donAcc_type": "standard", "distance": 2.833, "atom1_id": "///L/89/N", "atom2_id": "///L/89/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6672, "atom1_serNum": 70562, "atom2_serNum": 70568, "donAcc_type": "standard", "distance": 2.702, "atom1_id": "///L/91/N", "atom2_id": "///L/91/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6673, "atom1_serNum": 70573, "atom2_serNum": 70597, "donAcc_type": "standard", "distance": 3.296, "atom1_id": "///L/92/O", "atom2_id": "///L/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6674, "atom1_serNum": 70578, "atom2_serNum": 70597, "donAcc_type": "standard", "distance": 3.017, "atom1_id": "///L/93/O", "atom2_id": "///L/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6675, "atom1_serNum": 70595, "atom2_serNum": 70602, "donAcc_type": "standard", "distance": 2.677, "atom1_id": "///L/95/O", "atom2_id": "///L/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6676, "atom1_serNum": 70602, "atom2_serNum": 70608, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///L/97/N", "atom2_id": "///L/97/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6677, "atom1_serNum": 70605, "atom2_serNum": 70623, "donAcc_type": "standard", "distance": 2.884, "atom1_id": "///L/97/O", "atom2_id": "///L/100/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6678, "atom1_serNum": 70609, "atom2_serNum": 70637, "donAcc_type": "standard", "distance": 2.600, "atom1_id": "///L/97/OD2", "atom2_id": "///L/101/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6679, "atom1_serNum": 70613, "atom2_serNum": 70630, "donAcc_type": "standard", "distance": 2.731, "atom1_id": "///L/98/O", "atom2_id": "///L/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6680, "atom1_serNum": 70613, "atom2_serNum": 70638, "donAcc_type": "standard", "distance": 2.711, "atom1_id": "///L/98/O", "atom2_id": "///L/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6681, "atom1_serNum": 70641, "atom2_serNum": 70666, "donAcc_type": "standard", "distance": 3.963, "atom1_id": "///L/102/O", "atom2_id": "///L/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6682, "atom1_serNum": 70644, "atom2_serNum": 70772, "donAcc_type": "acceptable", "distance": 3.459, "atom1_id": "///L/102/OD1", "atom2_id": "///M/2/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6683, "atom1_serNum": 70645, "atom2_serNum": 70659, "donAcc_type": "acceptable", "distance": 2.422, "atom1_id": "///L/102/OD2", "atom2_id": "///L/104/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6684, "atom1_serNum": 70645, "atom2_serNum": 70661, "donAcc_type": "standard", "distance": 3.458, "atom1_id": "///L/102/OD2", "atom2_id": "///L/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6685, "atom1_serNum": 70649, "atom2_serNum": 70666, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///L/103/O", "atom2_id": "///L/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6686, "atom1_serNum": 70649, "atom2_serNum": 70677, "donAcc_type": "standard", "distance": 3.069, "atom1_id": "///L/103/O", "atom2_id": "///L/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6687, "atom1_serNum": 70657, "atom2_serNum": 70685, "donAcc_type": "standard", "distance": 3.211, "atom1_id": "///L/104/O", "atom2_id": "///L/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6688, "atom1_serNum": 70664, "atom2_serNum": 70685, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///L/105/O", "atom2_id": "///L/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6689, "atom1_serNum": 70664, "atom2_serNum": 70694, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///L/105/O", "atom2_id": "///L/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6690, "atom1_serNum": 70669, "atom2_serNum": 70702, "donAcc_type": "standard", "distance": 2.935, "atom1_id": "///L/106/O", "atom2_id": "///L/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6691, "atom1_serNum": 70680, "atom2_serNum": 70707, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///L/107/O", "atom2_id": "///L/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6692, "atom1_serNum": 70688, "atom2_serNum": 70715, "donAcc_type": "standard", "distance": 3.032, "atom1_id": "///L/108/O", "atom2_id": "///L/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6693, "atom1_serNum": 70692, "atom2_serNum": 71089, "donAcc_type": "standard", "distance": 3.058, "atom1_id": "///L/108/OE1", "atom2_id": "///M/45/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6694, "atom1_serNum": 70697, "atom2_serNum": 70720, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///L/109/O", "atom2_id": "///L/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6695, "atom1_serNum": 70705, "atom2_serNum": 70725, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///L/110/O", "atom2_id": "///L/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6696, "atom1_serNum": 70710, "atom2_serNum": 70730, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///L/111/O", "atom2_id": "///L/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6697, "atom1_serNum": 70718, "atom2_serNum": 70735, "donAcc_type": "standard", "distance": 3.047, "atom1_id": "///L/112/O", "atom2_id": "///L/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6698, "atom1_serNum": 70723, "atom2_serNum": 70744, "donAcc_type": "standard", "distance": 3.069, "atom1_id": "///L/113/O", "atom2_id": "///L/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6699, "atom1_serNum": 70733, "atom2_serNum": 70752, "donAcc_type": "standard", "distance": 3.375, "atom1_id": "///L/115/O", "atom2_id": "///L/118/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6700, "atom1_serNum": 70764, "atom2_serNum": 71066, "donAcc_type": "standard", "distance": 2.533, "atom1_id": "///M/2/O", "atom2_id": "///M/42/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6701, "atom1_serNum": 70773, "atom2_serNum": 70852, "donAcc_type": "standard", "distance": 2.923, "atom1_id": "///M/3/N", "atom2_id": "///M/14/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6702, "atom1_serNum": 70776, "atom2_serNum": 70849, "donAcc_type": "standard", "distance": 3.049, "atom1_id": "///M/3/O", "atom2_id": "///M/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6703, "atom1_serNum": 70776, "atom2_serNum": 70852, "donAcc_type": "questionable", "distance": 2.676, "atom1_id": "///M/3/O", "atom2_id": "///M/14/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6704, "atom1_serNum": 70778, "atom2_serNum": 71051, "donAcc_type": "standard", "distance": 3.181, "atom1_id": "///M/4/N", "atom2_id": "///M/40/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6705, "atom1_serNum": 70781, "atom2_serNum": 71040, "donAcc_type": "standard", "distance": 2.671, "atom1_id": "///M/4/O", "atom2_id": "///M/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6706, "atom1_serNum": 70781, "atom2_serNum": 71048, "donAcc_type": "standard", "distance": 3.403, "atom1_id": "///M/4/O", "atom2_id": "///M/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6707, "atom1_serNum": 70786, "atom2_serNum": 70835, "donAcc_type": "standard", "distance": 3.381, "atom1_id": "///M/5/N", "atom2_id": "///M/12/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6708, "atom1_serNum": 70789, "atom2_serNum": 70832, "donAcc_type": "standard", "distance": 3.097, "atom1_id": "///M/5/O", "atom2_id": "///M/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6709, "atom1_serNum": 70794, "atom2_serNum": 71028, "donAcc_type": "standard", "distance": 3.381, "atom1_id": "///M/6/N", "atom2_id": "///M/37/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6710, "atom1_serNum": 70797, "atom2_serNum": 70808, "donAcc_type": "acceptable", "distance": 3.097, "atom1_id": "///M/6/O", "atom2_id": "///M/7/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6711, "atom1_serNum": 70797, "atom2_serNum": 71031, "donAcc_type": "questionable", "distance": 2.946, "atom1_id": "///M/6/O", "atom2_id": "///M/37/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6712, "atom1_serNum": 70803, "atom2_serNum": 70821, "donAcc_type": "standard", "distance": 3.168, "atom1_id": "///M/7/N", "atom2_id": "///M/10/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6713, "atom1_serNum": 70806, "atom2_serNum": 70818, "donAcc_type": "standard", "distance": 3.138, "atom1_id": "///M/7/O", "atom2_id": "///M/10/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6714, "atom1_serNum": 70806, "atom2_serNum": 70821, "donAcc_type": "questionable", "distance": 2.632, "atom1_id": "///M/7/O", "atom2_id": "///M/10/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6715, "atom1_serNum": 70881, "atom2_serNum": 71484, "donAcc_type": "standard", "distance": 3.156, "atom1_id": "///M/18/O", "atom2_id": "///M/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6716, "atom1_serNum": 70894, "atom2_serNum": 71473, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///M/20/N", "atom2_id": "///M/95/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6717, "atom1_serNum": 70897, "atom2_serNum": 71470, "donAcc_type": "standard", "distance": 3.016, "atom1_id": "///M/20/O", "atom2_id": "///M/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6718, "atom1_serNum": 70913, "atom2_serNum": 71457, "donAcc_type": "standard", "distance": 3.145, "atom1_id": "///M/22/N", "atom2_id": "///M/93/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6719, "atom1_serNum": 70916, "atom2_serNum": 71454, "donAcc_type": "standard", "distance": 3.110, "atom1_id": "///M/22/O", "atom2_id": "///M/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6720, "atom1_serNum": 70942, "atom2_serNum": 70952, "donAcc_type": "standard", "distance": 2.793, "atom1_id": "///M/25/O", "atom2_id": "///M/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6721, "atom1_serNum": 70942, "atom2_serNum": 71225, "donAcc_type": "questionable", "distance": 3.190, "atom1_id": "///M/25/O", "atom2_id": "///M/65/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6722, "atom1_serNum": 70955, "atom2_serNum": 71226, "donAcc_type": "standard", "distance": 3.145, "atom1_id": "///M/27/O", "atom2_id": "///M/65/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6723, "atom1_serNum": 70957, "atom2_serNum": 70965, "donAcc_type": "standard", "distance": 2.639, "atom1_id": "///M/28/N", "atom2_id": "///M/28/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6724, "atom1_serNum": 70971, "atom2_serNum": 71196, "donAcc_type": "standard", "distance": 2.494, "atom1_id": "///M/30/N", "atom2_id": "///M/62/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6725, "atom1_serNum": 70975, "atom2_serNum": 70982, "donAcc_type": "standard", "distance": 2.755, "atom1_id": "///M/31/N", "atom2_id": "///M/31/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6726, "atom1_serNum": 70978, "atom2_serNum": 71193, "donAcc_type": "standard", "distance": 3.305, "atom1_id": "///M/31/O", "atom2_id": "///M/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6727, "atom1_serNum": 70987, "atom2_serNum": 70989, "donAcc_type": "acceptable", "distance": 2.754, "atom1_id": "///M/32/O", "atom2_id": "///M/32/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6728, "atom1_serNum": 70991, "atom2_serNum": 71182, "donAcc_type": "standard", "distance": 3.120, "atom1_id": "///M/33/N", "atom2_id": "///M/60/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6729, "atom1_serNum": 70994, "atom2_serNum": 71179, "donAcc_type": "standard", "distance": 2.942, "atom1_id": "///M/33/O", "atom2_id": "///M/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6730, "atom1_serNum": 71003, "atom2_serNum": 71163, "donAcc_type": "acceptable", "distance": 2.786, "atom1_id": "///M/34/OG1", "atom2_id": "///M/57/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6731, "atom1_serNum": 71005, "atom2_serNum": 71168, "donAcc_type": "standard", "distance": 2.925, "atom1_id": "///M/35/N", "atom2_id": "///M/58/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6732, "atom1_serNum": 71008, "atom2_serNum": 71163, "donAcc_type": "acceptable", "distance": 2.730, "atom1_id": "///M/35/O", "atom2_id": "///M/57/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6733, "atom1_serNum": 71008, "atom2_serNum": 71165, "donAcc_type": "standard", "distance": 3.566, "atom1_id": "///M/35/O", "atom2_id": "///M/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6734, "atom1_serNum": 71019, "atom2_serNum": 71033, "donAcc_type": "standard", "distance": 3.160, "atom1_id": "///M/36/O", "atom2_id": "///M/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6735, "atom1_serNum": 71019, "atom2_serNum": 71156, "donAcc_type": "questionable", "distance": 3.227, "atom1_id": "///M/36/O", "atom2_id": "///M/56/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6736, "atom1_serNum": 71036, "atom2_serNum": 71133, "donAcc_type": "standard", "distance": 3.274, "atom1_id": "///M/38/O", "atom2_id": "///M/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6737, "atom1_serNum": 71074, "atom2_serNum": 71080, "donAcc_type": "standard", "distance": 2.818, "atom1_id": "///M/44/N", "atom2_id": "///M/44/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6738, "atom1_serNum": 71085, "atom2_serNum": 71089, "donAcc_type": "standard", "distance": 2.700, "atom1_id": "///M/45/O", "atom2_id": "///M/45/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6739, "atom1_serNum": 71085, "atom2_serNum": 71097, "donAcc_type": "standard", "distance": 3.093, "atom1_id": "///M/45/O", "atom2_id": "///M/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6740, "atom1_serNum": 71140, "atom2_serNum": 71147, "donAcc_type": "standard", "distance": 2.519, "atom1_id": "///M/54/N", "atom2_id": "///M/54/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6741, "atom1_serNum": 71158, "atom2_serNum": 71521, "donAcc_type": "standard", "distance": 3.290, "atom1_id": "///M/57/N", "atom2_id": "///M/101/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6742, "atom1_serNum": 71161, "atom2_serNum": 71518, "donAcc_type": "standard", "distance": 3.113, "atom1_id": "///M/57/O", "atom2_id": "///M/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6743, "atom1_serNum": 71161, "atom2_serNum": 71525, "donAcc_type": "standard", "distance": 2.805, "atom1_id": "///M/57/O", "atom2_id": "///M/101/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6744, "atom1_serNum": 71175, "atom2_serNum": 71495, "donAcc_type": "questionable", "distance": 2.961, "atom1_id": "///M/59/O", "atom2_id": "///M/98/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6745, "atom1_serNum": 71184, "atom2_serNum": 71480, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///M/61/N", "atom2_id": "///M/96/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6746, "atom1_serNum": 71187, "atom2_serNum": 71208, "donAcc_type": "questionable", "distance": 2.750, "atom1_id": "///M/61/O", "atom2_id": "///M/63/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6747, "atom1_serNum": 71187, "atom2_serNum": 71477, "donAcc_type": "standard", "distance": 2.712, "atom1_id": "///M/61/O", "atom2_id": "///M/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6748, "atom1_serNum": 71200, "atom2_serNum": 71464, "donAcc_type": "standard", "distance": 3.258, "atom1_id": "///M/63/N", "atom2_id": "///M/94/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6749, "atom1_serNum": 71207, "atom2_serNum": 71470, "donAcc_type": "standard", "distance": 3.230, "atom1_id": "///M/63/OE1", "atom2_id": "///M/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6750, "atom1_serNum": 71207, "atom2_serNum": 71477, "donAcc_type": "standard", "distance": 3.243, "atom1_id": "///M/63/OE1", "atom2_id": "///M/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6751, "atom1_serNum": 71212, "atom2_serNum": 71459, "donAcc_type": "acceptable", "distance": 3.651, "atom1_id": "///M/64/O", "atom2_id": "///M/93/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6752, "atom1_serNum": 71212, "atom2_serNum": 71461, "donAcc_type": "standard", "distance": 2.849, "atom1_id": "///M/64/O", "atom2_id": "///M/94/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6753, "atom1_serNum": 71227, "atom2_serNum": 71445, "donAcc_type": "standard", "distance": 3.028, "atom1_id": "///M/66/N", "atom2_id": "///M/92/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6754, "atom1_serNum": 71230, "atom2_serNum": 71442, "donAcc_type": "standard", "distance": 2.659, "atom1_id": "///M/66/O", "atom2_id": "///M/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6755, "atom1_serNum": 71236, "atom2_serNum": 71429, "donAcc_type": "standard", "distance": 3.133, "atom1_id": "///M/68/N", "atom2_id": "///M/90/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6756, "atom1_serNum": 71244, "atom2_serNum": 71408, "donAcc_type": "questionable", "distance": 3.273, "atom1_id": "///M/69/O", "atom2_id": "///M/88/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6757, "atom1_serNum": 71259, "atom2_serNum": 71408, "donAcc_type": "standard", "distance": 3.082, "atom1_id": "///M/71/N", "atom2_id": "///M/88/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6758, "atom1_serNum": 71274, "atom2_serNum": 71395, "donAcc_type": "standard", "distance": 2.974, "atom1_id": "///M/73/N", "atom2_id": "///M/86/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6759, "atom1_serNum": 71277, "atom2_serNum": 71392, "donAcc_type": "standard", "distance": 3.293, "atom1_id": "///M/73/O", "atom2_id": "///M/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6760, "atom1_serNum": 71292, "atom2_serNum": 71377, "donAcc_type": "standard", "distance": 3.348, "atom1_id": "///M/75/N", "atom2_id": "///M/84/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6761, "atom1_serNum": 71295, "atom2_serNum": 71374, "donAcc_type": "standard", "distance": 3.441, "atom1_id": "///M/75/O", "atom2_id": "///M/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6762, "atom1_serNum": 71315, "atom2_serNum": 71360, "donAcc_type": "standard", "distance": 3.732, "atom1_id": "///M/77/N", "atom2_id": "///M/82/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6763, "atom1_serNum": 71318, "atom2_serNum": 71343, "donAcc_type": "questionable", "distance": 2.843, "atom1_id": "///M/77/O", "atom2_id": "///M/80/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6764, "atom1_serNum": 71327, "atom2_serNum": 71340, "donAcc_type": "standard", "distance": 2.756, "atom1_id": "///M/78/O", "atom2_id": "///M/80/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6765, "atom1_serNum": 71343, "atom2_serNum": 71357, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///M/80/O", "atom2_id": "///M/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6766, "atom1_serNum": 71414, "atom2_serNum": 71433, "donAcc_type": "standard", "distance": 3.110, "atom1_id": "///M/88/NE2", "atom2_id": "///M/90/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6767, "atom1_serNum": 71509, "atom2_serNum": 71524, "donAcc_type": "standard", "distance": 3.024, "atom1_id": "///M/99/NZ", "atom2_id": "///M/101/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6768, "atom1_serNum": 71541, "atom2_serNum": 72328, "donAcc_type": "standard", "distance": 2.629, "atom1_id": "///N/3/N", "atom2_id": "///N/107/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6769, "atom1_serNum": 71544, "atom2_serNum": 72325, "donAcc_type": "standard", "distance": 2.572, "atom1_id": "///N/3/O", "atom2_id": "///N/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6770, "atom1_serNum": 71555, "atom2_serNum": 72313, "donAcc_type": "standard", "distance": 2.864, "atom1_id": "///N/5/N", "atom2_id": "///N/105/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6771, "atom1_serNum": 71558, "atom2_serNum": 72310, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///N/5/O", "atom2_id": "///N/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6772, "atom1_serNum": 71567, "atom2_serNum": 72298, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///N/7/N", "atom2_id": "///N/103/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6773, "atom1_serNum": 71570, "atom2_serNum": 72295, "donAcc_type": "standard", "distance": 3.401, "atom1_id": "///N/7/O", "atom2_id": "///N/103/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6774, "atom1_serNum": 71575, "atom2_serNum": 71588, "donAcc_type": "acceptable", "distance": 2.692, "atom1_id": "///N/8/O", "atom2_id": "///N/9/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6775, "atom1_serNum": 71583, "atom2_serNum": 72282, "donAcc_type": "standard", "distance": 3.415, "atom1_id": "///N/9/N", "atom2_id": "///N/101/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6776, "atom1_serNum": 71583, "atom2_serNum": 72291, "donAcc_type": "acceptable", "distance": 3.588, "atom1_id": "///N/9/N", "atom2_id": "///N/102/ND1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6777, "atom1_serNum": 71586, "atom2_serNum": 71588, "donAcc_type": "acceptable", "distance": 2.447, "atom1_id": "///N/9/O", "atom2_id": "///N/9/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6778, "atom1_serNum": 71590, "atom2_serNum": 72282, "donAcc_type": "standard", "distance": 3.521, "atom1_id": "///N/10/N", "atom2_id": "///N/101/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6779, "atom1_serNum": 71593, "atom2_serNum": 71602, "donAcc_type": "standard", "distance": 2.905, "atom1_id": "///N/10/O", "atom2_id": "///N/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6780, "atom1_serNum": 71593, "atom2_serNum": 72279, "donAcc_type": "standard", "distance": 3.555, "atom1_id": "///N/10/O", "atom2_id": "///N/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6781, "atom1_serNum": 71605, "atom2_serNum": 72284, "donAcc_type": "acceptable", "distance": 2.660, "atom1_id": "///N/12/O", "atom2_id": "///N/101/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6782, "atom1_serNum": 71613, "atom2_serNum": 71642, "donAcc_type": "standard", "distance": 3.051, "atom1_id": "///N/13/O", "atom2_id": "///N/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6783, "atom1_serNum": 71618, "atom2_serNum": 71647, "donAcc_type": "standard", "distance": 3.088, "atom1_id": "///N/14/O", "atom2_id": "///N/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6784, "atom1_serNum": 71625, "atom2_serNum": 71658, "donAcc_type": "standard", "distance": 3.791, "atom1_id": "///N/15/O", "atom2_id": "///N/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6785, "atom1_serNum": 71645, "atom2_serNum": 71666, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///N/17/O", "atom2_id": "///N/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6786, "atom1_serNum": 71645, "atom2_serNum": 71673, "donAcc_type": "standard", "distance": 3.372, "atom1_id": "///N/17/O", "atom2_id": "///N/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6787, "atom1_serNum": 71650, "atom2_serNum": 71678, "donAcc_type": "standard", "distance": 3.391, "atom1_id": "///N/18/O", "atom2_id": "///N/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6788, "atom1_serNum": 71657, "atom2_serNum": 72081, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///N/18/NH2", "atom2_id": "///N/76/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6789, "atom1_serNum": 71669, "atom2_serNum": 71686, "donAcc_type": "standard", "distance": 3.058, "atom1_id": "///N/20/O", "atom2_id": "///N/23/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6790, "atom1_serNum": 71676, "atom2_serNum": 71702, "donAcc_type": "standard", "distance": 3.429, "atom1_id": "///N/21/O", "atom2_id": "///N/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6791, "atom1_serNum": 71697, "atom2_serNum": 71717, "donAcc_type": "standard", "distance": 3.356, "atom1_id": "///N/24/O", "atom2_id": "///N/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6792, "atom1_serNum": 71712, "atom2_serNum": 72065, "donAcc_type": "standard", "distance": 2.799, "atom1_id": "///N/25/NH2", "atom2_id": "///N/74/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6793, "atom1_serNum": 71729, "atom2_serNum": 71755, "donAcc_type": "standard", "distance": 3.175, "atom1_id": "///N/28/O", "atom2_id": "///N/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6794, "atom1_serNum": 71733, "atom2_serNum": 71742, "donAcc_type": "standard", "distance": 2.563, "atom1_id": "///N/28/OE1", "atom2_id": "///N/30/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6795, "atom1_serNum": 71733, "atom2_serNum": 71754, "donAcc_type": "questionable", "distance": 2.856, "atom1_id": "///N/28/OE1", "atom2_id": "///N/31/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6796, "atom1_serNum": 71734, "atom2_serNum": 72011, "donAcc_type": "standard", "distance": 2.594, "atom1_id": "///N/28/NE2", "atom2_id": "///N/67/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6797, "atom1_serNum": 71735, "atom2_serNum": 72027, "donAcc_type": "standard", "distance": 3.074, "atom1_id": "///N/29/N", "atom2_id": "///N/69/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6798, "atom1_serNum": 71738, "atom2_serNum": 71760, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///N/29/O", "atom2_id": "///N/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6799, "atom1_serNum": 71745, "atom2_serNum": 71767, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///N/30/O", "atom2_id": "///N/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6800, "atom1_serNum": 71746, "atom2_serNum": 71754, "donAcc_type": "standard", "distance": 3.221, "atom1_id": "///N/31/N", "atom2_id": "///N/31/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6801, "atom1_serNum": 71749, "atom2_serNum": 71773, "donAcc_type": "standard", "distance": 2.812, "atom1_id": "///N/31/O", "atom2_id": "///N/35/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6802, "atom1_serNum": 71758, "atom2_serNum": 71781, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///N/32/O", "atom2_id": "///N/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6803, "atom1_serNum": 71763, "atom2_serNum": 71786, "donAcc_type": "standard", "distance": 3.231, "atom1_id": "///N/33/O", "atom2_id": "///N/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6804, "atom1_serNum": 71770, "atom2_serNum": 71794, "donAcc_type": "standard", "distance": 3.749, "atom1_id": "///N/34/O", "atom2_id": "///N/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6805, "atom1_serNum": 71776, "atom2_serNum": 71794, "donAcc_type": "standard", "distance": 3.135, "atom1_id": "///N/35/O", "atom2_id": "///N/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6806, "atom1_serNum": 71776, "atom2_serNum": 71802, "donAcc_type": "standard", "distance": 3.534, "atom1_id": "///N/35/O", "atom2_id": "///N/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6807, "atom1_serNum": 71784, "atom2_serNum": 71836, "donAcc_type": "acceptable", "distance": 2.814, "atom1_id": "///N/36/O", "atom2_id": "///N/44/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6808, "atom1_serNum": 71805, "atom2_serNum": 71816, "donAcc_type": "standard", "distance": 3.075, "atom1_id": "///N/39/O", "atom2_id": "///N/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6809, "atom1_serNum": 71819, "atom2_serNum": 71831, "donAcc_type": "standard", "distance": 3.147, "atom1_id": "///N/41/O", "atom2_id": "///N/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6810, "atom1_serNum": 71829, "atom2_serNum": 71852, "donAcc_type": "standard", "distance": 2.972, "atom1_id": "///N/43/O", "atom2_id": "///N/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6811, "atom1_serNum": 71834, "atom2_serNum": 71860, "donAcc_type": "standard", "distance": 3.030, "atom1_id": "///N/44/O", "atom2_id": "///N/48/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6812, "atom1_serNum": 71840, "atom2_serNum": 71869, "donAcc_type": "standard", "distance": 3.382, "atom1_id": "///N/45/O", "atom2_id": "///N/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6813, "atom1_serNum": 71847, "atom2_serNum": 71878, "donAcc_type": "standard", "distance": 3.314, "atom1_id": "///N/46/O", "atom2_id": "///N/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6814, "atom1_serNum": 71855, "atom2_serNum": 71885, "donAcc_type": "standard", "distance": 2.991, "atom1_id": "///N/47/O", "atom2_id": "///N/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6815, "atom1_serNum": 71863, "atom2_serNum": 71893, "donAcc_type": "standard", "distance": 3.051, "atom1_id": "///N/48/O", "atom2_id": "///N/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6816, "atom1_serNum": 71872, "atom2_serNum": 71902, "donAcc_type": "standard", "distance": 3.042, "atom1_id": "///N/49/O", "atom2_id": "///N/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6817, "atom1_serNum": 71881, "atom2_serNum": 71907, "donAcc_type": "acceptable", "distance": 2.617, "atom1_id": "///N/50/O", "atom2_id": "///N/53/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6818, "atom1_serNum": 71881, "atom2_serNum": 71908, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///N/50/O", "atom2_id": "///N/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6819, "atom1_serNum": 71888, "atom2_serNum": 71913, "donAcc_type": "standard", "distance": 3.061, "atom1_id": "///N/51/O", "atom2_id": "///N/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6820, "atom1_serNum": 71896, "atom2_serNum": 71921, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///N/52/O", "atom2_id": "///N/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6821, "atom1_serNum": 71905, "atom2_serNum": 71926, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///N/53/O", "atom2_id": "///N/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6822, "atom1_serNum": 71911, "atom2_serNum": 71934, "donAcc_type": "standard", "distance": 2.934, "atom1_id": "///N/54/O", "atom2_id": "///N/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6823, "atom1_serNum": 71916, "atom2_serNum": 71939, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///N/55/O", "atom2_id": "///N/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6824, "atom1_serNum": 71924, "atom2_serNum": 71948, "donAcc_type": "standard", "distance": 2.891, "atom1_id": "///N/56/O", "atom2_id": "///N/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6825, "atom1_serNum": 71929, "atom2_serNum": 71958, "donAcc_type": "standard", "distance": 2.963, "atom1_id": "///N/57/O", "atom2_id": "///N/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6826, "atom1_serNum": 71937, "atom2_serNum": 71966, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///N/58/O", "atom2_id": "///N/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6827, "atom1_serNum": 71937, "atom2_serNum": 71978, "donAcc_type": "standard", "distance": 3.380, "atom1_id": "///N/58/O", "atom2_id": "///N/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6828, "atom1_serNum": 71942, "atom2_serNum": 71978, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///N/59/O", "atom2_id": "///N/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6829, "atom1_serNum": 71946, "atom2_serNum": 71990, "donAcc_type": "questionable", "distance": 2.982, "atom1_id": "///N/59/OE1", "atom2_id": "///N/64/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6830, "atom1_serNum": 71951, "atom2_serNum": 71986, "donAcc_type": "questionable", "distance": 2.724, "atom1_id": "///N/60/O", "atom2_id": "///N/63/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6831, "atom1_serNum": 71954, "atom2_serNum": 71965, "donAcc_type": "acceptable", "distance": 3.097, "atom1_id": "///N/60/ND1", "atom2_id": "///N/61/ND2", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6832, "atom1_serNum": 72016, "atom2_serNum": 72022, "donAcc_type": "standard", "distance": 2.768, "atom1_id": "///N/68/N", "atom2_id": "///N/68/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6833, "atom1_serNum": 72022, "atom2_serNum": 72346, "donAcc_type": "questionable", "distance": 2.939, "atom1_id": "///N/68/OD1", "atom2_id": "///N/109/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6834, "atom1_serNum": 72032, "atom2_serNum": 72335, "donAcc_type": "standard", "distance": 3.406, "atom1_id": "///N/70/N", "atom2_id": "///N/108/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6835, "atom1_serNum": 72035, "atom2_serNum": 72332, "donAcc_type": "standard", "distance": 3.352, "atom1_id": "///N/70/O", "atom2_id": "///N/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6836, "atom1_serNum": 72047, "atom2_serNum": 72321, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///N/72/N", "atom2_id": "///N/106/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6837, "atom1_serNum": 72053, "atom2_serNum": 72321, "donAcc_type": "standard", "distance": 3.137, "atom1_id": "///N/73/N", "atom2_id": "///N/106/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6838, "atom1_serNum": 72056, "atom2_serNum": 72318, "donAcc_type": "standard", "distance": 2.852, "atom1_id": "///N/73/O", "atom2_id": "///N/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6839, "atom1_serNum": 72067, "atom2_serNum": 72306, "donAcc_type": "standard", "distance": 3.441, "atom1_id": "///N/75/N", "atom2_id": "///N/104/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6840, "atom1_serNum": 72070, "atom2_serNum": 72303, "donAcc_type": "standard", "distance": 3.381, "atom1_id": "///N/75/O", "atom2_id": "///N/104/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6841, "atom1_serNum": 72085, "atom2_serNum": 72288, "donAcc_type": "standard", "distance": 2.803, "atom1_id": "///N/77/N", "atom2_id": "///N/102/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6842, "atom1_serNum": 72088, "atom2_serNum": 72285, "donAcc_type": "standard", "distance": 2.548, "atom1_id": "///N/77/O", "atom2_id": "///N/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6843, "atom1_serNum": 72093, "atom2_serNum": 72100, "donAcc_type": "standard", "distance": 2.776, "atom1_id": "///N/78/N", "atom2_id": "///N/78/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6844, "atom1_serNum": 72109, "atom2_serNum": 72277, "donAcc_type": "acceptable", "distance": 3.267, "atom1_id": "///N/80/O", "atom2_id": "///N/100/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6845, "atom1_serNum": 72120, "atom2_serNum": 72255, "donAcc_type": "standard", "distance": 3.206, "atom1_id": "///N/82/N", "atom2_id": "///N/98/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6846, "atom1_serNum": 72123, "atom2_serNum": 72252, "donAcc_type": "standard", "distance": 3.012, "atom1_id": "///N/82/O", "atom2_id": "///N/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6847, "atom1_serNum": 72137, "atom2_serNum": 72239, "donAcc_type": "standard", "distance": 3.140, "atom1_id": "///N/84/N", "atom2_id": "///N/96/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6848, "atom1_serNum": 72140, "atom2_serNum": 72236, "donAcc_type": "standard", "distance": 3.109, "atom1_id": "///N/84/O", "atom2_id": "///N/96/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6849, "atom1_serNum": 72159, "atom2_serNum": 72224, "donAcc_type": "standard", "distance": 3.536, "atom1_id": "///N/86/N", "atom2_id": "///N/94/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6850, "atom1_serNum": 72162, "atom2_serNum": 72221, "donAcc_type": "standard", "distance": 3.377, "atom1_id": "///N/86/O", "atom2_id": "///N/94/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6851, "atom1_serNum": 72162, "atom2_serNum": 72226, "donAcc_type": "acceptable", "distance": 3.059, "atom1_id": "///N/86/O", "atom2_id": "///N/94/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6852, "atom1_serNum": 72177, "atom2_serNum": 72208, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///N/88/N", "atom2_id": "///N/92/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6853, "atom1_serNum": 72191, "atom2_serNum": 72201, "donAcc_type": "standard", "distance": 2.758, "atom1_id": "///N/89/O", "atom2_id": "///N/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6854, "atom1_serNum": 72275, "atom2_serNum": 72284, "donAcc_type": "acceptable", "distance": 2.652, "atom1_id": "///N/100/O", "atom2_id": "///N/101/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6855, "atom1_serNum": 72369, "atom2_serNum": 72392, "donAcc_type": "standard", "distance": 3.442, "atom1_id": "///O/3/O", "atom2_id": "///O/6/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6856, "atom1_serNum": 72384, "atom2_serNum": 72410, "donAcc_type": "questionable", "distance": 3.180, "atom1_id": "///O/5/O", "atom2_id": "///O/8/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6857, "atom1_serNum": 72391, "atom2_serNum": 74329, "donAcc_type": "standard", "distance": 3.008, "atom1_id": "///O/5/NH2", "atom2_id": "///R/23/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6858, "atom1_serNum": 72391, "atom2_serNum": 74330, "donAcc_type": "standard", "distance": 2.814, "atom1_id": "///O/5/NH2", "atom2_id": "///R/23/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6859, "atom1_serNum": 72403, "atom2_serNum": 72599, "donAcc_type": "standard", "distance": 3.200, "atom1_id": "///O/7/O", "atom2_id": "///O/31/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6860, "atom1_serNum": 72415, "atom2_serNum": 72586, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///O/9/N", "atom2_id": "///O/29/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6861, "atom1_serNum": 72424, "atom2_serNum": 72586, "donAcc_type": "standard", "distance": 3.626, "atom1_id": "///O/10/N", "atom2_id": "///O/29/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6862, "atom1_serNum": 72427, "atom2_serNum": 72583, "donAcc_type": "standard", "distance": 2.936, "atom1_id": "///O/10/O", "atom2_id": "///O/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6863, "atom1_serNum": 72445, "atom2_serNum": 72489, "donAcc_type": "acceptable", "distance": 3.477, "atom1_id": "///O/12/O", "atom2_id": "///O/17/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6864, "atom1_serNum": 72457, "atom2_serNum": 72489, "donAcc_type": "acceptable", "distance": 2.537, "atom1_id": "///O/14/N", "atom2_id": "///O/17/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6865, "atom1_serNum": 72460, "atom2_serNum": 72489, "donAcc_type": "acceptable", "distance": 2.528, "atom1_id": "///O/14/O", "atom2_id": "///O/17/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6866, "atom1_serNum": 72460, "atom2_serNum": 72490, "donAcc_type": "standard", "distance": 2.686, "atom1_id": "///O/14/O", "atom2_id": "///O/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6867, "atom1_serNum": 72462, "atom2_serNum": 72473, "donAcc_type": "acceptable", "distance": 3.216, "atom1_id": "///O/14/OG1", "atom2_id": "///O/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6868, "atom1_serNum": 72462, "atom2_serNum": 72484, "donAcc_type": "acceptable", "distance": 3.101, "atom1_id": "///O/14/OG1", "atom2_id": "///O/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6869, "atom1_serNum": 72467, "atom2_serNum": 72495, "donAcc_type": "standard", "distance": 3.035, "atom1_id": "///O/15/O", "atom2_id": "///O/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6870, "atom1_serNum": 72476, "atom2_serNum": 72503, "donAcc_type": "standard", "distance": 3.022, "atom1_id": "///O/16/O", "atom2_id": "///O/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6871, "atom1_serNum": 72487, "atom2_serNum": 72511, "donAcc_type": "standard", "distance": 2.969, "atom1_id": "///O/17/O", "atom2_id": "///O/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6872, "atom1_serNum": 72498, "atom2_serNum": 72519, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///O/19/O", "atom2_id": "///O/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6873, "atom1_serNum": 72498, "atom2_serNum": 72524, "donAcc_type": "acceptable", "distance": 2.541, "atom1_id": "///O/19/O", "atom2_id": "///O/22/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6874, "atom1_serNum": 72498, "atom2_serNum": 72533, "donAcc_type": "questionable", "distance": 2.891, "atom1_id": "///O/19/O", "atom2_id": "///O/23/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6875, "atom1_serNum": 72506, "atom2_serNum": 72526, "donAcc_type": "standard", "distance": 2.840, "atom1_id": "///O/20/O", "atom2_id": "///O/23/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6876, "atom1_serNum": 72506, "atom2_serNum": 72544, "donAcc_type": "standard", "distance": 3.076, "atom1_id": "///O/20/O", "atom2_id": "///O/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6877, "atom1_serNum": 72514, "atom2_serNum": 72535, "donAcc_type": "standard", "distance": 3.217, "atom1_id": "///O/21/O", "atom2_id": "///O/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6878, "atom1_serNum": 72524, "atom2_serNum": 72533, "donAcc_type": "acceptable", "distance": 2.597, "atom1_id": "///O/22/OG1", "atom2_id": "///O/23/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6879, "atom1_serNum": 72524, "atom2_serNum": 72534, "donAcc_type": "acceptable", "distance": 2.632, "atom1_id": "///O/22/OG1", "atom2_id": "///O/23/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6880, "atom1_serNum": 72538, "atom2_serNum": 73005, "donAcc_type": "standard", "distance": 3.538, "atom1_id": "///O/24/O", "atom2_id": "///O/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6881, "atom1_serNum": 72553, "atom2_serNum": 72996, "donAcc_type": "standard", "distance": 2.989, "atom1_id": "///O/26/N", "atom2_id": "///O/81/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6882, "atom1_serNum": 72556, "atom2_serNum": 72993, "donAcc_type": "standard", "distance": 3.005, "atom1_id": "///O/26/O", "atom2_id": "///O/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6883, "atom1_serNum": 72572, "atom2_serNum": 72983, "donAcc_type": "standard", "distance": 2.998, "atom1_id": "///O/28/N", "atom2_id": "///O/79/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6884, "atom1_serNum": 72575, "atom2_serNum": 72980, "donAcc_type": "standard", "distance": 3.232, "atom1_id": "///O/28/O", "atom2_id": "///O/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6885, "atom1_serNum": 72591, "atom2_serNum": 72595, "donAcc_type": "questionable", "distance": 2.785, "atom1_id": "///O/29/OE2", "atom2_id": "///O/30/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6886, "atom1_serNum": 72591, "atom2_serNum": 72960, "donAcc_type": "standard", "distance": 3.079, "atom1_id": "///O/29/OE2", "atom2_id": "///O/77/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6887, "atom1_serNum": 72592, "atom2_serNum": 72963, "donAcc_type": "standard", "distance": 3.150, "atom1_id": "///O/30/N", "atom2_id": "///O/77/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6888, "atom1_serNum": 72595, "atom2_serNum": 72963, "donAcc_type": "questionable", "distance": 3.043, "atom1_id": "///O/30/O", "atom2_id": "///O/77/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6889, "atom1_serNum": 72602, "atom2_serNum": 72625, "donAcc_type": "standard", "distance": 3.211, "atom1_id": "///O/31/O", "atom2_id": "///O/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6890, "atom1_serNum": 72605, "atom2_serNum": 72624, "donAcc_type": "standard", "distance": 2.765, "atom1_id": "///O/31/OD1", "atom2_id": "///O/33/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6891, "atom1_serNum": 72606, "atom2_serNum": 72623, "donAcc_type": "standard", "distance": 2.670, "atom1_id": "///O/31/OD2", "atom2_id": "///O/33/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6892, "atom1_serNum": 72606, "atom2_serNum": 72624, "donAcc_type": "standard", "distance": 2.798, "atom1_id": "///O/31/OD2", "atom2_id": "///O/33/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6893, "atom1_serNum": 72628, "atom2_serNum": 72969, "donAcc_type": "standard", "distance": 2.723, "atom1_id": "///O/34/O", "atom2_id": "///O/77/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6894, "atom1_serNum": 72633, "atom2_serNum": 72663, "donAcc_type": "standard", "distance": 3.236, "atom1_id": "///O/35/O", "atom2_id": "///O/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6895, "atom1_serNum": 72636, "atom2_serNum": 72647, "donAcc_type": "standard", "distance": 2.857, "atom1_id": "///O/35/OD1", "atom2_id": "///O/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6896, "atom1_serNum": 72636, "atom2_serNum": 72652, "donAcc_type": "acceptable", "distance": 2.500, "atom1_id": "///O/35/OD1", "atom2_id": "///O/37/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6897, "atom1_serNum": 72636, "atom2_serNum": 72654, "donAcc_type": "standard", "distance": 2.446, "atom1_id": "///O/35/OD1", "atom2_id": "///O/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6898, "atom1_serNum": 72641, "atom2_serNum": 72670, "donAcc_type": "standard", "distance": 3.306, "atom1_id": "///O/36/O", "atom2_id": "///O/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6899, "atom1_serNum": 72646, "atom2_serNum": 72776, "donAcc_type": "standard", "distance": 3.637, "atom1_id": "///O/36/NZ", "atom2_id": "///O/54/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6900, "atom1_serNum": 72650, "atom2_serNum": 72679, "donAcc_type": "standard", "distance": 3.287, "atom1_id": "///O/37/O", "atom2_id": "///O/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6901, "atom1_serNum": 72657, "atom2_serNum": 72687, "donAcc_type": "standard", "distance": 2.882, "atom1_id": "///O/38/O", "atom2_id": "///O/42/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6902, "atom1_serNum": 72666, "atom2_serNum": 72692, "donAcc_type": "standard", "distance": 2.811, "atom1_id": "///O/39/O", "atom2_id": "///O/43/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6903, "atom1_serNum": 72673, "atom2_serNum": 72699, "donAcc_type": "standard", "distance": 2.952, "atom1_id": "///O/40/O", "atom2_id": "///O/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6904, "atom1_serNum": 72682, "atom2_serNum": 72708, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///O/41/O", "atom2_id": "///O/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6905, "atom1_serNum": 72690, "atom2_serNum": 72714, "donAcc_type": "standard", "distance": 2.917, "atom1_id": "///O/42/O", "atom2_id": "///O/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6906, "atom1_serNum": 72695, "atom2_serNum": 72722, "donAcc_type": "standard", "distance": 3.692, "atom1_id": "///O/43/O", "atom2_id": "///O/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6907, "atom1_serNum": 72702, "atom2_serNum": 72733, "donAcc_type": "standard", "distance": 3.179, "atom1_id": "///O/44/O", "atom2_id": "///O/48/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6908, "atom1_serNum": 72702, "atom2_serNum": 72737, "donAcc_type": "standard", "distance": 3.851, "atom1_id": "///O/44/O", "atom2_id": "///O/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6909, "atom1_serNum": 72707, "atom2_serNum": 72749, "donAcc_type": "standard", "distance": 2.589, "atom1_id": "///O/44/OE2", "atom2_id": "///O/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6910, "atom1_serNum": 72744, "atom2_serNum": 73031, "donAcc_type": "standard", "distance": 3.061, "atom1_id": "///O/50/N", "atom2_id": "///O/86/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6911, "atom1_serNum": 72747, "atom2_serNum": 73013, "donAcc_type": "standard", "distance": 3.104, "atom1_id": "///O/50/O", "atom2_id": "///O/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6912, "atom1_serNum": 72756, "atom2_serNum": 73003, "donAcc_type": "standard", "distance": 3.096, "atom1_id": "///O/52/N", "atom2_id": "///O/82/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6913, "atom1_serNum": 72764, "atom2_serNum": 73003, "donAcc_type": "standard", "distance": 3.184, "atom1_id": "///O/53/N", "atom2_id": "///O/82/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6914, "atom1_serNum": 72767, "atom2_serNum": 73000, "donAcc_type": "standard", "distance": 3.132, "atom1_id": "///O/53/O", "atom2_id": "///O/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6915, "atom1_serNum": 72780, "atom2_serNum": 72988, "donAcc_type": "standard", "distance": 2.785, "atom1_id": "///O/55/N", "atom2_id": "///O/80/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6916, "atom1_serNum": 72783, "atom2_serNum": 72985, "donAcc_type": "standard", "distance": 2.628, "atom1_id": "///O/55/O", "atom2_id": "///O/80/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6917, "atom1_serNum": 72796, "atom2_serNum": 72974, "donAcc_type": "standard", "distance": 3.107, "atom1_id": "///O/57/N", "atom2_id": "///O/78/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6918, "atom1_serNum": 72799, "atom2_serNum": 72971, "donAcc_type": "standard", "distance": 2.975, "atom1_id": "///O/57/O", "atom2_id": "///O/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6919, "atom1_serNum": 72812, "atom2_serNum": 72952, "donAcc_type": "standard", "distance": 2.551, "atom1_id": "///O/59/N", "atom2_id": "///O/76/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6920, "atom1_serNum": 72837, "atom2_serNum": 72930, "donAcc_type": "acceptable", "distance": 2.602, "atom1_id": "///O/62/N", "atom2_id": "///O/73/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6921, "atom1_serNum": 72840, "atom2_serNum": 72925, "donAcc_type": "standard", "distance": 2.584, "atom1_id": "///O/62/O", "atom2_id": "///O/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6922, "atom1_serNum": 72840, "atom2_serNum": 72930, "donAcc_type": "acceptable", "distance": 3.075, "atom1_id": "///O/62/O", "atom2_id": "///O/73/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6923, "atom1_serNum": 72849, "atom2_serNum": 72851, "donAcc_type": "acceptable", "distance": 2.960, "atom1_id": "///O/63/O", "atom2_id": "///O/63/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6924, "atom1_serNum": 72852, "atom2_serNum": 72916, "donAcc_type": "standard", "distance": 3.083, "atom1_id": "///O/64/N", "atom2_id": "///O/71/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6925, "atom1_serNum": 72855, "atom2_serNum": 72913, "donAcc_type": "standard", "distance": 3.336, "atom1_id": "///O/64/O", "atom2_id": "///O/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6926, "atom1_serNum": 72855, "atom2_serNum": 72916, "donAcc_type": "questionable", "distance": 2.958, "atom1_id": "///O/64/O", "atom2_id": "///O/71/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6927, "atom1_serNum": 72870, "atom2_serNum": 72882, "donAcc_type": "standard", "distance": 2.602, "atom1_id": "///O/65/NH1", "atom2_id": "///O/67/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6928, "atom1_serNum": 72872, "atom2_serNum": 72897, "donAcc_type": "standard", "distance": 3.016, "atom1_id": "///O/66/N", "atom2_id": "///O/69/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6929, "atom1_serNum": 72875, "atom2_serNum": 72894, "donAcc_type": "standard", "distance": 3.075, "atom1_id": "///O/66/O", "atom2_id": "///O/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6930, "atom1_serNum": 73016, "atom2_serNum": 73025, "donAcc_type": "standard", "distance": 3.072, "atom1_id": "///O/84/O", "atom2_id": "///O/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6931, "atom1_serNum": 73048, "atom2_serNum": 73055, "donAcc_type": "standard", "distance": 2.696, "atom1_id": "///O/89/N", "atom2_id": "///O/89/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6932, "atom1_serNum": 73056, "atom2_serNum": 73073, "donAcc_type": "questionable", "distance": 2.448, "atom1_id": "///O/89/OE2", "atom2_id": "///O/91/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6933, "atom1_serNum": 73086, "atom2_serNum": 73703, "donAcc_type": "standard", "distance": 3.098, "atom1_id": "///P/2/O", "atom2_id": "///P/92/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6934, "atom1_serNum": 73103, "atom2_serNum": 73128, "donAcc_type": "questionable", "distance": 3.231, "atom1_id": "///P/4/O", "atom2_id": "///P/7/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6935, "atom1_serNum": 73122, "atom2_serNum": 73128, "donAcc_type": "standard", "distance": 2.728, "atom1_id": "///P/7/N", "atom2_id": "///P/7/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6936, "atom1_serNum": 73129, "atom2_serNum": 73704, "donAcc_type": "standard", "distance": 3.365, "atom1_id": "///P/7/OD2", "atom2_id": "///P/92/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6937, "atom1_serNum": 73139, "atom2_serNum": 73227, "donAcc_type": "standard", "distance": 2.829, "atom1_id": "///P/9/N", "atom2_id": "///P/21/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6938, "atom1_serNum": 73142, "atom2_serNum": 73224, "donAcc_type": "standard", "distance": 3.300, "atom1_id": "///P/9/O", "atom2_id": "///P/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6939, "atom1_serNum": 73146, "atom2_serNum": 73532, "donAcc_type": "standard", "distance": 2.762, "atom1_id": "///P/10/N", "atom2_id": "///P/69/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6940, "atom1_serNum": 73149, "atom2_serNum": 73529, "donAcc_type": "standard", "distance": 2.710, "atom1_id": "///P/10/O", "atom2_id": "///P/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6941, "atom1_serNum": 73151, "atom2_serNum": 73209, "donAcc_type": "standard", "distance": 3.372, "atom1_id": "///P/11/N", "atom2_id": "///P/19/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6942, "atom1_serNum": 73158, "atom2_serNum": 73517, "donAcc_type": "standard", "distance": 3.052, "atom1_id": "///P/12/N", "atom2_id": "///P/67/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6943, "atom1_serNum": 73175, "atom2_serNum": 73193, "donAcc_type": "standard", "distance": 3.623, "atom1_id": "///P/14/O", "atom2_id": "///P/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6944, "atom1_serNum": 73188, "atom2_serNum": 73214, "donAcc_type": "standard", "distance": 3.160, "atom1_id": "///P/16/O", "atom2_id": "///P/19/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6945, "atom1_serNum": 73192, "atom2_serNum": 73358, "donAcc_type": "standard", "distance": 2.671, "atom1_id": "///P/16/OD2", "atom2_id": "///P/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6946, "atom1_serNum": 73228, "atom2_serNum": 73345, "donAcc_type": "standard", "distance": 3.302, "atom1_id": "///P/22/N", "atom2_id": "///P/36/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6947, "atom1_serNum": 73231, "atom2_serNum": 73338, "donAcc_type": "standard", "distance": 3.432, "atom1_id": "///P/22/O", "atom2_id": "///P/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6948, "atom1_serNum": 73243, "atom2_serNum": 73326, "donAcc_type": "standard", "distance": 2.636, "atom1_id": "///P/24/N", "atom2_id": "///P/34/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6949, "atom1_serNum": 73251, "atom2_serNum": 73326, "donAcc_type": "standard", "distance": 3.272, "atom1_id": "///P/25/N", "atom2_id": "///P/34/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6950, "atom1_serNum": 73254, "atom2_serNum": 73323, "donAcc_type": "standard", "distance": 2.689, "atom1_id": "///P/25/O", "atom2_id": "///P/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6951, "atom1_serNum": 73261, "atom2_serNum": 73308, "donAcc_type": "standard", "distance": 2.828, "atom1_id": "///P/27/N", "atom2_id": "///P/32/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6952, "atom1_serNum": 73264, "atom2_serNum": 73297, "donAcc_type": "standard", "distance": 2.674, "atom1_id": "///P/27/O", "atom2_id": "///P/31/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6953, "atom1_serNum": 73264, "atom2_serNum": 73305, "donAcc_type": "standard", "distance": 3.291, "atom1_id": "///P/27/O", "atom2_id": "///P/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6954, "atom1_serNum": 73300, "atom2_serNum": 73501, "donAcc_type": "standard", "distance": 3.147, "atom1_id": "///P/31/O", "atom2_id": "///P/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6955, "atom1_serNum": 73316, "atom2_serNum": 73486, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///P/33/N", "atom2_id": "///P/63/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6956, "atom1_serNum": 73319, "atom2_serNum": 73483, "donAcc_type": "standard", "distance": 2.897, "atom1_id": "///P/33/O", "atom2_id": "///P/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6957, "atom1_serNum": 73334, "atom2_serNum": 73351, "donAcc_type": "standard", "distance": 3.663, "atom1_id": "///P/35/O", "atom2_id": "///P/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6958, "atom1_serNum": 73361, "atom2_serNum": 73471, "donAcc_type": "standard", "distance": 3.445, "atom1_id": "///P/39/O", "atom2_id": "///P/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6959, "atom1_serNum": 73365, "atom2_serNum": 73474, "donAcc_type": "standard", "distance": 2.625, "atom1_id": "///P/39/ND2", "atom2_id": "///P/61/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6960, "atom1_serNum": 73374, "atom2_serNum": 73456, "donAcc_type": "standard", "distance": 2.584, "atom1_id": "///P/41/N", "atom2_id": "///P/59/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6961, "atom1_serNum": 73377, "atom2_serNum": 73453, "donAcc_type": "standard", "distance": 3.396, "atom1_id": "///P/41/O", "atom2_id": "///P/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6962, "atom1_serNum": 73389, "atom2_serNum": 73405, "donAcc_type": "standard", "distance": 3.079, "atom1_id": "///P/43/O", "atom2_id": "///P/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6963, "atom1_serNum": 73389, "atom2_serNum": 73439, "donAcc_type": "standard", "distance": 3.215, "atom1_id": "///P/43/O", "atom2_id": "///P/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6964, "atom1_serNum": 73398, "atom2_serNum": 73411, "donAcc_type": "standard", "distance": 3.222, "atom1_id": "///P/44/O", "atom2_id": "///P/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6965, "atom1_serNum": 73408, "atom2_serNum": 73427, "donAcc_type": "standard", "distance": 3.615, "atom1_id": "///P/45/O", "atom2_id": "///P/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6966, "atom1_serNum": 73410, "atom2_serNum": 73414, "donAcc_type": "acceptable", "distance": 3.133, "atom1_id": "///P/45/OG", "atom2_id": "///P/46/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6967, "atom1_serNum": 73430, "atom2_serNum": 73439, "donAcc_type": "standard", "distance": 3.164, "atom1_id": "///P/55/O", "atom2_id": "///P/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6968, "atom1_serNum": 73497, "atom2_serNum": 73508, "donAcc_type": "acceptable", "distance": 3.221, "atom1_id": "///P/64/ND1", "atom2_id": "///P/66/N", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 6969, "atom1_serNum": 73504, "atom2_serNum": 73522, "donAcc_type": "standard", "distance": 3.121, "atom1_id": "///P/65/O", "atom2_id": "///P/68/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6970, "atom1_serNum": 73511, "atom2_serNum": 73513, "donAcc_type": "acceptable", "distance": 2.577, "atom1_id": "///P/66/O", "atom2_id": "///P/66/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6971, "atom1_serNum": 73540, "atom2_serNum": 73597, "donAcc_type": "standard", "distance": 3.108, "atom1_id": "///P/70/O", "atom2_id": "///P/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6972, "atom1_serNum": 73549, "atom2_serNum": 73584, "donAcc_type": "standard", "distance": 2.467, "atom1_id": "///P/72/N", "atom2_id": "///P/77/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6973, "atom1_serNum": 73552, "atom2_serNum": 73577, "donAcc_type": "standard", "distance": 3.123, "atom1_id": "///P/72/O", "atom2_id": "///P/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6974, "atom1_serNum": 73575, "atom2_serNum": 73588, "donAcc_type": "acceptable", "distance": 3.697, "atom1_id": "///P/75/OG1", "atom2_id": "///P/77/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6975, "atom1_serNum": 73607, "atom2_serNum": 73717, "donAcc_type": "standard", "distance": 3.159, "atom1_id": "///P/80/O", "atom2_id": "///P/95/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6976, "atom1_serNum": 73616, "atom2_serNum": 73708, "donAcc_type": "standard", "distance": 2.940, "atom1_id": "///P/82/N", "atom2_id": "///P/93/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6977, "atom1_serNum": 73619, "atom2_serNum": 73705, "donAcc_type": "standard", "distance": 2.629, "atom1_id": "///P/82/O", "atom2_id": "///P/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6978, "atom1_serNum": 73641, "atom2_serNum": 73690, "donAcc_type": "standard", "distance": 3.714, "atom1_id": "///P/85/N", "atom2_id": "///P/91/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6979, "atom1_serNum": 73644, "atom2_serNum": 73657, "donAcc_type": "standard", "distance": 3.042, "atom1_id": "///P/85/O", "atom2_id": "///P/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6980, "atom1_serNum": 73644, "atom2_serNum": 73687, "donAcc_type": "standard", "distance": 3.412, "atom1_id": "///P/85/O", "atom2_id": "///P/91/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6981, "atom1_serNum": 73657, "atom2_serNum": 73672, "donAcc_type": "standard", "distance": 3.222, "atom1_id": "///P/87/N", "atom2_id": "///P/89/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6982, "atom1_serNum": 73660, "atom2_serNum": 73669, "donAcc_type": "standard", "distance": 2.809, "atom1_id": "///P/87/O", "atom2_id": "///P/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6983, "atom1_serNum": 73697, "atom2_serNum": 73761, "donAcc_type": "standard", "distance": 3.175, "atom1_id": "///P/92/O", "atom2_id": "///P/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6984, "atom1_serNum": 73712, "atom2_serNum": 73748, "donAcc_type": "standard", "distance": 3.552, "atom1_id": "///P/94/N", "atom2_id": "///P/99/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6985, "atom1_serNum": 73715, "atom2_serNum": 73738, "donAcc_type": "questionable", "distance": 2.525, "atom1_id": "///P/94/O", "atom2_id": "///P/97/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6986, "atom1_serNum": 73729, "atom2_serNum": 73740, "donAcc_type": "acceptable", "distance": 2.454, "atom1_id": "///P/96/O", "atom2_id": "///P/97/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6987, "atom1_serNum": 73729, "atom2_serNum": 73741, "donAcc_type": "standard", "distance": 2.998, "atom1_id": "///P/96/O", "atom2_id": "///P/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6988, "atom1_serNum": 73780, "atom2_serNum": 73846, "donAcc_type": "standard", "distance": 3.875, "atom1_id": "///Q/33/N", "atom2_id": "///Q/44/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6989, "atom1_serNum": 73788, "atom2_serNum": 73799, "donAcc_type": "standard", "distance": 3.590, "atom1_id": "///Q/34/O", "atom2_id": "///Q/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6990, "atom1_serNum": 73795, "atom2_serNum": 74045, "donAcc_type": "standard", "distance": 2.895, "atom1_id": "///Q/36/N", "atom2_id": "///Q/75/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6991, "atom1_serNum": 73802, "atom2_serNum": 74042, "donAcc_type": "standard", "distance": 3.125, "atom1_id": "///Q/37/O", "atom2_id": "///Q/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6992, "atom1_serNum": 73815, "atom2_serNum": 74034, "donAcc_type": "standard", "distance": 3.339, "atom1_id": "///Q/39/N", "atom2_id": "///Q/73/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6993, "atom1_serNum": 73818, "atom2_serNum": 74031, "donAcc_type": "standard", "distance": 3.572, "atom1_id": "///Q/39/O", "atom2_id": "///Q/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6994, "atom1_serNum": 73836, "atom2_serNum": 73843, "donAcc_type": "standard", "distance": 2.820, "atom1_id": "///Q/42/O", "atom2_id": "///Q/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 6995, "atom1_serNum": 73836, "atom2_serNum": 73997, "donAcc_type": "questionable", "distance": 3.185, "atom1_id": "///Q/42/O", "atom2_id": "///Q/67/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6996, "atom1_serNum": 73840, "atom2_serNum": 73842, "donAcc_type": "acceptable", "distance": 2.555, "atom1_id": "///Q/43/O", "atom2_id": "///Q/43/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6997, "atom1_serNum": 73842, "atom2_serNum": 73851, "donAcc_type": "acceptable", "distance": 3.353, "atom1_id": "///Q/43/OG", "atom2_id": "///Q/45/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 6998, "atom1_serNum": 73843, "atom2_serNum": 73997, "donAcc_type": "standard", "distance": 3.418, "atom1_id": "///Q/44/N", "atom2_id": "///Q/67/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 6999, "atom1_serNum": 73911, "atom2_serNum": 74119, "donAcc_type": "standard", "distance": 3.125, "atom1_id": "///Q/54/O", "atom2_id": "///Q/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7000, "atom1_serNum": 73934, "atom2_serNum": 74135, "donAcc_type": "standard", "distance": 3.402, "atom1_id": "///Q/57/O", "atom2_id": "///Q/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7001, "atom1_serNum": 73942, "atom2_serNum": 74009, "donAcc_type": "standard", "distance": 3.293, "atom1_id": "///Q/58/OD1", "atom2_id": "///Q/70/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7002, "atom1_serNum": 73942, "atom2_serNum": 74018, "donAcc_type": "standard", "distance": 2.622, "atom1_id": "///Q/58/OD1", "atom2_id": "///Q/71/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7003, "atom1_serNum": 73943, "atom2_serNum": 74021, "donAcc_type": "standard", "distance": 3.049, "atom1_id": "///Q/58/ND2", "atom2_id": "///Q/71/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7004, "atom1_serNum": 73943, "atom2_serNum": 74138, "donAcc_type": "standard", "distance": 3.427, "atom1_id": "///Q/58/ND2", "atom2_id": "///Q/89/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7005, "atom1_serNum": 73951, "atom2_serNum": 74002, "donAcc_type": "standard", "distance": 2.785, "atom1_id": "///Q/60/N", "atom2_id": "///Q/68/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7006, "atom1_serNum": 73954, "atom2_serNum": 73999, "donAcc_type": "standard", "distance": 3.107, "atom1_id": "///Q/60/O", "atom2_id": "///Q/68/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7007, "atom1_serNum": 73966, "atom2_serNum": 73982, "donAcc_type": "standard", "distance": 2.420, "atom1_id": "///Q/62/N", "atom2_id": "///Q/65/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7008, "atom1_serNum": 73979, "atom2_serNum": 73985, "donAcc_type": "standard", "distance": 2.753, "atom1_id": "///Q/65/N", "atom2_id": "///Q/65/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7009, "atom1_serNum": 73990, "atom2_serNum": 73992, "donAcc_type": "acceptable", "distance": 2.429, "atom1_id": "///Q/66/O", "atom2_id": "///Q/66/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7010, "atom1_serNum": 73997, "atom2_serNum": 74004, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///Q/67/O", "atom2_id": "///Q/69/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7011, "atom1_serNum": 74023, "atom2_serNum": 74029, "donAcc_type": "standard", "distance": 2.727, "atom1_id": "///Q/72/N", "atom2_id": "///Q/72/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7012, "atom1_serNum": 74035, "atom2_serNum": 74145, "donAcc_type": "standard", "distance": 2.820, "atom1_id": "///Q/74/N", "atom2_id": "///Q/90/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7013, "atom1_serNum": 74038, "atom2_serNum": 74142, "donAcc_type": "standard", "distance": 3.311, "atom1_id": "///Q/74/O", "atom2_id": "///Q/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7014, "atom1_serNum": 74052, "atom2_serNum": 74129, "donAcc_type": "standard", "distance": 3.729, "atom1_id": "///Q/76/O", "atom2_id": "///Q/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7015, "atom1_serNum": 74081, "atom2_serNum": 74104, "donAcc_type": "standard", "distance": 3.384, "atom1_id": "///Q/80/N", "atom2_id": "///Q/83/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7016, "atom1_serNum": 74084, "atom2_serNum": 74101, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///Q/80/O", "atom2_id": "///Q/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7017, "atom1_serNum": 74095, "atom2_serNum": 74101, "donAcc_type": "standard", "distance": 3.025, "atom1_id": "///Q/81/O", "atom2_id": "///Q/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7018, "atom1_serNum": 74132, "atom2_serNum": 74134, "donAcc_type": "acceptable", "distance": 2.972, "atom1_id": "///Q/88/O", "atom2_id": "///Q/88/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7019, "atom1_serNum": 74132, "atom2_serNum": 74142, "donAcc_type": "standard", "distance": 3.339, "atom1_id": "///Q/88/O", "atom2_id": "///Q/90/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7020, "atom1_serNum": 74134, "atom2_serNum": 74153, "donAcc_type": "acceptable", "distance": 3.437, "atom1_id": "///Q/88/OG", "atom2_id": "///Q/90/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7021, "atom1_serNum": 74172, "atom2_serNum": 74187, "donAcc_type": "standard", "distance": 2.859, "atom1_id": "///R/1/O", "atom2_id": "///R/4/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7022, "atom1_serNum": 74180, "atom2_serNum": 74204, "donAcc_type": "standard", "distance": 3.051, "atom1_id": "///R/2/O", "atom2_id": "///R/6/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7023, "atom1_serNum": 74185, "atom2_serNum": 74212, "donAcc_type": "standard", "distance": 3.067, "atom1_id": "///R/3/O", "atom2_id": "///R/7/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7024, "atom1_serNum": 74195, "atom2_serNum": 74202, "donAcc_type": "standard", "distance": 2.783, "atom1_id": "///R/5/N", "atom2_id": "///R/5/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7025, "atom1_serNum": 74215, "atom2_serNum": 74221, "donAcc_type": "standard", "distance": 3.060, "atom1_id": "///R/7/O", "atom2_id": "///R/7/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7026, "atom1_serNum": 74234, "atom2_serNum": 74258, "donAcc_type": "standard", "distance": 3.713, "atom1_id": "///R/9/O", "atom2_id": "///R/13/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7027, "atom1_serNum": 74244, "atom2_serNum": 74632, "donAcc_type": "acceptable", "distance": 2.965, "atom1_id": "///R/10/OG1", "atom2_id": "///R/60/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7028, "atom1_serNum": 74249, "atom2_serNum": 74271, "donAcc_type": "standard", "distance": 3.357, "atom1_id": "///R/11/O", "atom2_id": "///R/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7029, "atom1_serNum": 74256, "atom2_serNum": 74280, "donAcc_type": "standard", "distance": 3.402, "atom1_id": "///R/12/O", "atom2_id": "///R/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7030, "atom1_serNum": 74266, "atom2_serNum": 74289, "donAcc_type": "standard", "distance": 2.761, "atom1_id": "///R/14/O", "atom2_id": "///R/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7031, "atom1_serNum": 74266, "atom2_serNum": 74294, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///R/14/O", "atom2_id": "///R/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7032, "atom1_serNum": 74283, "atom2_serNum": 74306, "donAcc_type": "standard", "distance": 2.850, "atom1_id": "///R/16/O", "atom2_id": "///R/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7033, "atom1_serNum": 74283, "atom2_serNum": 74311, "donAcc_type": "acceptable", "distance": 2.811, "atom1_id": "///R/16/O", "atom2_id": "///R/20/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7034, "atom1_serNum": 74292, "atom2_serNum": 74312, "donAcc_type": "standard", "distance": 2.635, "atom1_id": "///R/17/O", "atom2_id": "///R/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7035, "atom1_serNum": 74297, "atom2_serNum": 74317, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///R/18/O", "atom2_id": "///R/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7036, "atom1_serNum": 74304, "atom2_serNum": 74322, "donAcc_type": "standard", "distance": 3.265, "atom1_id": "///R/19/O", "atom2_id": "///R/23/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7037, "atom1_serNum": 74309, "atom2_serNum": 74331, "donAcc_type": "standard", "distance": 2.922, "atom1_id": "///R/20/O", "atom2_id": "///R/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7038, "atom1_serNum": 74309, "atom2_serNum": 74338, "donAcc_type": "questionable", "distance": 2.528, "atom1_id": "///R/20/O", "atom2_id": "///R/24/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7039, "atom1_serNum": 74315, "atom2_serNum": 74340, "donAcc_type": "standard", "distance": 2.831, "atom1_id": "///R/21/O", "atom2_id": "///R/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7040, "atom1_serNum": 74320, "atom2_serNum": 74348, "donAcc_type": "standard", "distance": 2.720, "atom1_id": "///R/22/O", "atom2_id": "///R/26/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7041, "atom1_serNum": 74325, "atom2_serNum": 74359, "donAcc_type": "standard", "distance": 2.914, "atom1_id": "///R/23/O", "atom2_id": "///R/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7042, "atom1_serNum": 74334, "atom2_serNum": 74367, "donAcc_type": "standard", "distance": 2.807, "atom1_id": "///R/24/O", "atom2_id": "///R/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7043, "atom1_serNum": 74343, "atom2_serNum": 74375, "donAcc_type": "standard", "distance": 2.944, "atom1_id": "///R/25/O", "atom2_id": "///R/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7044, "atom1_serNum": 74351, "atom2_serNum": 74386, "donAcc_type": "standard", "distance": 3.113, "atom1_id": "///R/26/O", "atom2_id": "///R/30/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7045, "atom1_serNum": 74359, "atom2_serNum": 74365, "donAcc_type": "standard", "distance": 2.827, "atom1_id": "///R/27/N", "atom2_id": "///R/27/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7046, "atom1_serNum": 74362, "atom2_serNum": 74397, "donAcc_type": "standard", "distance": 3.024, "atom1_id": "///R/27/O", "atom2_id": "///R/31/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7047, "atom1_serNum": 74370, "atom2_serNum": 74406, "donAcc_type": "standard", "distance": 2.801, "atom1_id": "///R/28/O", "atom2_id": "///R/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7048, "atom1_serNum": 74378, "atom2_serNum": 74414, "donAcc_type": "standard", "distance": 2.837, "atom1_id": "///R/29/O", "atom2_id": "///R/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7049, "atom1_serNum": 74389, "atom2_serNum": 74419, "donAcc_type": "standard", "distance": 2.711, "atom1_id": "///R/30/O", "atom2_id": "///R/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7050, "atom1_serNum": 74389, "atom2_serNum": 74424, "donAcc_type": "acceptable", "distance": 3.077, "atom1_id": "///R/30/O", "atom2_id": "///R/34/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7051, "atom1_serNum": 74400, "atom2_serNum": 74426, "donAcc_type": "standard", "distance": 2.968, "atom1_id": "///R/31/O", "atom2_id": "///R/35/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7052, "atom1_serNum": 74459, "atom2_serNum": 74476, "donAcc_type": "standard", "distance": 3.310, "atom1_id": "///R/39/O", "atom2_id": "///R/42/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7053, "atom1_serNum": 74474, "atom2_serNum": 74495, "donAcc_type": "standard", "distance": 3.087, "atom1_id": "///R/41/O", "atom2_id": "///R/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7054, "atom1_serNum": 74474, "atom2_serNum": 74506, "donAcc_type": "standard", "distance": 3.425, "atom1_id": "///R/41/O", "atom2_id": "///R/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7055, "atom1_serNum": 74479, "atom2_serNum": 74515, "donAcc_type": "standard", "distance": 3.134, "atom1_id": "///R/42/O", "atom2_id": "///R/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7056, "atom1_serNum": 74490, "atom2_serNum": 74522, "donAcc_type": "standard", "distance": 3.585, "atom1_id": "///R/43/O", "atom2_id": "///R/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7057, "atom1_serNum": 74498, "atom2_serNum": 74522, "donAcc_type": "standard", "distance": 3.020, "atom1_id": "///R/44/O", "atom2_id": "///R/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7058, "atom1_serNum": 74498, "atom2_serNum": 74533, "donAcc_type": "standard", "distance": 3.233, "atom1_id": "///R/44/O", "atom2_id": "///R/48/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7059, "atom1_serNum": 74509, "atom2_serNum": 74542, "donAcc_type": "standard", "distance": 2.748, "atom1_id": "///R/45/O", "atom2_id": "///R/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7060, "atom1_serNum": 74518, "atom2_serNum": 74542, "donAcc_type": "standard", "distance": 2.845, "atom1_id": "///R/46/O", "atom2_id": "///R/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7061, "atom1_serNum": 74518, "atom2_serNum": 74547, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///R/46/O", "atom2_id": "///R/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7062, "atom1_serNum": 74525, "atom2_serNum": 74555, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///R/47/O", "atom2_id": "///R/51/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7063, "atom1_serNum": 74536, "atom2_serNum": 74560, "donAcc_type": "standard", "distance": 3.173, "atom1_id": "///R/48/O", "atom2_id": "///R/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7064, "atom1_serNum": 74545, "atom2_serNum": 74571, "donAcc_type": "standard", "distance": 3.049, "atom1_id": "///R/49/O", "atom2_id": "///R/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7065, "atom1_serNum": 74550, "atom2_serNum": 74571, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///R/50/O", "atom2_id": "///R/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7066, "atom1_serNum": 74550, "atom2_serNum": 74579, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///R/50/O", "atom2_id": "///R/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7067, "atom1_serNum": 74558, "atom2_serNum": 74584, "donAcc_type": "standard", "distance": 2.824, "atom1_id": "///R/51/O", "atom2_id": "///R/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7068, "atom1_serNum": 74558, "atom2_serNum": 74589, "donAcc_type": "acceptable", "distance": 2.806, "atom1_id": "///R/51/O", "atom2_id": "///R/55/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7069, "atom1_serNum": 74563, "atom2_serNum": 74591, "donAcc_type": "standard", "distance": 2.805, "atom1_id": "///R/52/O", "atom2_id": "///R/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7070, "atom1_serNum": 74574, "atom2_serNum": 74598, "donAcc_type": "standard", "distance": 3.094, "atom1_id": "///R/53/O", "atom2_id": "///R/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7071, "atom1_serNum": 74582, "atom2_serNum": 74603, "donAcc_type": "standard", "distance": 2.974, "atom1_id": "///R/54/O", "atom2_id": "///R/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7072, "atom1_serNum": 74587, "atom2_serNum": 74614, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///R/55/O", "atom2_id": "///R/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7073, "atom1_serNum": 74594, "atom2_serNum": 74623, "donAcc_type": "standard", "distance": 3.041, "atom1_id": "///R/56/O", "atom2_id": "///R/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7074, "atom1_serNum": 74601, "atom2_serNum": 74634, "donAcc_type": "standard", "distance": 3.027, "atom1_id": "///R/57/O", "atom2_id": "///R/61/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7075, "atom1_serNum": 74606, "atom2_serNum": 74643, "donAcc_type": "standard", "distance": 3.002, "atom1_id": "///R/58/O", "atom2_id": "///R/62/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7076, "atom1_serNum": 74612, "atom2_serNum": 74641, "donAcc_type": "standard", "distance": 2.549, "atom1_id": "///R/58/NH1", "atom2_id": "///R/61/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7077, "atom1_serNum": 74617, "atom2_serNum": 74651, "donAcc_type": "standard", "distance": 2.868, "atom1_id": "///R/59/O", "atom2_id": "///R/63/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7078, "atom1_serNum": 74626, "atom2_serNum": 74656, "donAcc_type": "standard", "distance": 2.747, "atom1_id": "///R/60/O", "atom2_id": "///R/64/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7079, "atom1_serNum": 74637, "atom2_serNum": 74661, "donAcc_type": "standard", "distance": 3.573, "atom1_id": "///R/61/O", "atom2_id": "///R/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7080, "atom1_serNum": 74646, "atom2_serNum": 74661, "donAcc_type": "standard", "distance": 2.647, "atom1_id": "///R/62/O", "atom2_id": "///R/65/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7081, "atom1_serNum": 74670, "atom2_serNum": 74967, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///S/2/N", "atom2_id": "///S/39/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7082, "atom1_serNum": 74670, "atom2_serNum": 74968, "donAcc_type": "standard", "distance": 2.918, "atom1_id": "///S/2/N", "atom2_id": "///S/39/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7083, "atom1_serNum": 74678, "atom2_serNum": 75115, "donAcc_type": "questionable", "distance": 2.573, "atom1_id": "///S/3/O", "atom2_id": "///S/59/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7084, "atom1_serNum": 74684, "atom2_serNum": 74945, "donAcc_type": "standard", "distance": 2.568, "atom1_id": "///S/4/N", "atom2_id": "///S/37/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7085, "atom1_serNum": 74687, "atom2_serNum": 74942, "donAcc_type": "standard", "distance": 3.180, "atom1_id": "///S/4/O", "atom2_id": "///S/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7086, "atom1_serNum": 74692, "atom2_serNum": 75093, "donAcc_type": "standard", "distance": 3.336, "atom1_id": "///S/5/N", "atom2_id": "///S/57/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7087, "atom1_serNum": 74695, "atom2_serNum": 75090, "donAcc_type": "standard", "distance": 3.376, "atom1_id": "///S/5/O", "atom2_id": "///S/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7088, "atom1_serNum": 74701, "atom2_serNum": 74931, "donAcc_type": "standard", "distance": 2.595, "atom1_id": "///S/6/N", "atom2_id": "///S/35/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7089, "atom1_serNum": 74704, "atom2_serNum": 74928, "donAcc_type": "standard", "distance": 2.768, "atom1_id": "///S/6/O", "atom2_id": "///S/35/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7090, "atom1_serNum": 74709, "atom2_serNum": 75080, "donAcc_type": "standard", "distance": 3.302, "atom1_id": "///S/7/N", "atom2_id": "///S/55/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7091, "atom1_serNum": 74712, "atom2_serNum": 75077, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///S/7/O", "atom2_id": "///S/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7092, "atom1_serNum": 74712, "atom2_serNum": 75082, "donAcc_type": "acceptable", "distance": 2.825, "atom1_id": "///S/7/O", "atom2_id": "///S/55/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7093, "atom1_serNum": 74716, "atom2_serNum": 74915, "donAcc_type": "standard", "distance": 3.861, "atom1_id": "///S/8/N", "atom2_id": "///S/33/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7094, "atom1_serNum": 74724, "atom2_serNum": 75065, "donAcc_type": "standard", "distance": 3.000, "atom1_id": "///S/9/N", "atom2_id": "///S/53/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7095, "atom1_serNum": 74753, "atom2_serNum": 74769, "donAcc_type": "standard", "distance": 3.051, "atom1_id": "///S/12/O", "atom2_id": "///S/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7096, "atom1_serNum": 74753, "atom2_serNum": 74823, "donAcc_type": "standard", "distance": 3.093, "atom1_id": "///S/12/O", "atom2_id": "///S/20/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7097, "atom1_serNum": 74772, "atom2_serNum": 74822, "donAcc_type": "standard", "distance": 3.219, "atom1_id": "///S/15/O", "atom2_id": "///S/20/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7098, "atom1_serNum": 74772, "atom2_serNum": 74823, "donAcc_type": "standard", "distance": 3.088, "atom1_id": "///S/15/O", "atom2_id": "///S/20/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7099, "atom1_serNum": 74783, "atom2_serNum": 74811, "donAcc_type": "questionable", "distance": 2.771, "atom1_id": "///S/16/O", "atom2_id": "///S/19/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7100, "atom1_serNum": 74783, "atom2_serNum": 74813, "donAcc_type": "standard", "distance": 3.327, "atom1_id": "///S/16/O", "atom2_id": "///S/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7101, "atom1_serNum": 74787, "atom2_serNum": 74794, "donAcc_type": "standard", "distance": 2.767, "atom1_id": "///S/17/N", "atom2_id": "///S/17/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7102, "atom1_serNum": 74790, "atom2_serNum": 74824, "donAcc_type": "standard", "distance": 2.818, "atom1_id": "///S/17/O", "atom2_id": "///S/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7103, "atom1_serNum": 74799, "atom2_serNum": 74831, "donAcc_type": "standard", "distance": 3.037, "atom1_id": "///S/18/O", "atom2_id": "///S/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7104, "atom1_serNum": 74799, "atom2_serNum": 74836, "donAcc_type": "acceptable", "distance": 3.052, "atom1_id": "///S/18/O", "atom2_id": "///S/22/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7105, "atom1_serNum": 74804, "atom2_serNum": 74811, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///S/19/N", "atom2_id": "///S/19/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7106, "atom1_serNum": 74807, "atom2_serNum": 74836, "donAcc_type": "acceptable", "distance": 2.534, "atom1_id": "///S/19/O", "atom2_id": "///S/22/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7107, "atom1_serNum": 74807, "atom2_serNum": 74838, "donAcc_type": "standard", "distance": 3.106, "atom1_id": "///S/19/O", "atom2_id": "///S/23/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7108, "atom1_serNum": 74816, "atom2_serNum": 74845, "donAcc_type": "standard", "distance": 3.050, "atom1_id": "///S/20/O", "atom2_id": "///S/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7109, "atom1_serNum": 74827, "atom2_serNum": 74856, "donAcc_type": "standard", "distance": 2.850, "atom1_id": "///S/21/O", "atom2_id": "///S/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7110, "atom1_serNum": 74827, "atom2_serNum": 74861, "donAcc_type": "acceptable", "distance": 3.030, "atom1_id": "///S/21/O", "atom2_id": "///S/25/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7111, "atom1_serNum": 74834, "atom2_serNum": 74856, "donAcc_type": "standard", "distance": 2.621, "atom1_id": "///S/22/O", "atom2_id": "///S/25/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7112, "atom1_serNum": 74834, "atom2_serNum": 74863, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///S/22/O", "atom2_id": "///S/26/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7113, "atom1_serNum": 74841, "atom2_serNum": 74875, "donAcc_type": "standard", "distance": 3.367, "atom1_id": "///S/23/O", "atom2_id": "///S/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7114, "atom1_serNum": 74848, "atom2_serNum": 74854, "donAcc_type": "standard", "distance": 3.062, "atom1_id": "///S/24/O", "atom2_id": "///S/24/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7115, "atom1_serNum": 74848, "atom2_serNum": 74871, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///S/24/O", "atom2_id": "///S/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7116, "atom1_serNum": 74866, "atom2_serNum": 74951, "donAcc_type": "standard", "distance": 3.465, "atom1_id": "///S/26/O", "atom2_id": "///S/37/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7117, "atom1_serNum": 74874, "atom2_serNum": 74883, "donAcc_type": "standard", "distance": 3.078, "atom1_id": "///S/27/O", "atom2_id": "///S/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7118, "atom1_serNum": 74883, "atom2_serNum": 74919, "donAcc_type": "standard", "distance": 2.811, "atom1_id": "///S/29/N", "atom2_id": "///S/33/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7119, "atom1_serNum": 74888, "atom2_serNum": 74919, "donAcc_type": "standard", "distance": 3.208, "atom1_id": "///S/30/N", "atom2_id": "///S/33/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7120, "atom1_serNum": 74924, "atom2_serNum": 74926, "donAcc_type": "acceptable", "distance": 2.698, "atom1_id": "///S/34/O", "atom2_id": "///S/34/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7121, "atom1_serNum": 74972, "atom2_serNum": 74987, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///S/40/O", "atom2_id": "///S/43/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7122, "atom1_serNum": 74972, "atom2_serNum": 74995, "donAcc_type": "standard", "distance": 3.079, "atom1_id": "///S/40/O", "atom2_id": "///S/44/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7123, "atom1_serNum": 74975, "atom2_serNum": 74977, "donAcc_type": "standard", "distance": 2.593, "atom1_id": "///S/40/OD1", "atom2_id": "///S/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7124, "atom1_serNum": 74975, "atom2_serNum": 74982, "donAcc_type": "standard", "distance": 2.830, "atom1_id": "///S/40/OD1", "atom2_id": "///S/42/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7125, "atom1_serNum": 74980, "atom2_serNum": 75006, "donAcc_type": "standard", "distance": 2.859, "atom1_id": "///S/41/O", "atom2_id": "///S/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7126, "atom1_serNum": 74985, "atom2_serNum": 75010, "donAcc_type": "standard", "distance": 2.850, "atom1_id": "///S/42/O", "atom2_id": "///S/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7127, "atom1_serNum": 74990, "atom2_serNum": 75018, "donAcc_type": "standard", "distance": 3.233, "atom1_id": "///S/43/O", "atom2_id": "///S/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7128, "atom1_serNum": 74998, "atom2_serNum": 75026, "donAcc_type": "standard", "distance": 3.018, "atom1_id": "///S/44/O", "atom2_id": "///S/48/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7129, "atom1_serNum": 75009, "atom2_serNum": 75034, "donAcc_type": "standard", "distance": 2.700, "atom1_id": "///S/45/O", "atom2_id": "///S/49/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7130, "atom1_serNum": 75013, "atom2_serNum": 75039, "donAcc_type": "standard", "distance": 3.024, "atom1_id": "///S/46/O", "atom2_id": "///S/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7131, "atom1_serNum": 75049, "atom2_serNum": 75073, "donAcc_type": "questionable", "distance": 2.706, "atom1_id": "///S/51/O", "atom2_id": "///S/54/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7132, "atom1_serNum": 75080, "atom2_serNum": 75082, "donAcc_type": "acceptable", "distance": 3.129, "atom1_id": "///S/55/O", "atom2_id": "///S/55/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7133, "atom1_serNum": 75093, "atom2_serNum": 75108, "donAcc_type": "standard", "distance": 3.112, "atom1_id": "///S/57/O", "atom2_id": "///S/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7134, "atom1_serNum": 75175, "atom2_serNum": 75204, "donAcc_type": "standard", "distance": 3.268, "atom1_id": "///T/9/O", "atom2_id": "///T/13/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7135, "atom1_serNum": 75177, "atom2_serNum": 75195, "donAcc_type": "acceptable", "distance": 3.536, "atom1_id": "///T/9/OG", "atom2_id": "///T/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7136, "atom1_serNum": 75181, "atom2_serNum": 75213, "donAcc_type": "standard", "distance": 2.968, "atom1_id": "///T/10/O", "atom2_id": "///T/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7137, "atom1_serNum": 75190, "atom2_serNum": 75224, "donAcc_type": "standard", "distance": 3.036, "atom1_id": "///T/11/O", "atom2_id": "///T/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7138, "atom1_serNum": 75198, "atom2_serNum": 75232, "donAcc_type": "standard", "distance": 3.003, "atom1_id": "///T/12/O", "atom2_id": "///T/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7139, "atom1_serNum": 75207, "atom2_serNum": 75243, "donAcc_type": "standard", "distance": 3.031, "atom1_id": "///T/13/O", "atom2_id": "///T/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7140, "atom1_serNum": 75227, "atom2_serNum": 75254, "donAcc_type": "standard", "distance": 3.068, "atom1_id": "///T/15/O", "atom2_id": "///T/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7141, "atom1_serNum": 75246, "atom2_serNum": 75271, "donAcc_type": "standard", "distance": 3.178, "atom1_id": "///T/17/O", "atom2_id": "///T/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7142, "atom1_serNum": 75257, "atom2_serNum": 75290, "donAcc_type": "standard", "distance": 3.619, "atom1_id": "///T/18/O", "atom2_id": "///T/21/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7143, "atom1_serNum": 75264, "atom2_serNum": 75282, "donAcc_type": "standard", "distance": 2.708, "atom1_id": "///T/19/O", "atom2_id": "///T/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7144, "atom1_serNum": 75330, "atom2_serNum": 75395, "donAcc_type": "standard", "distance": 3.004, "atom1_id": "///T/28/N", "atom2_id": "///T/37/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7145, "atom1_serNum": 75333, "atom2_serNum": 75392, "donAcc_type": "standard", "distance": 2.443, "atom1_id": "///T/28/O", "atom2_id": "///T/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7146, "atom1_serNum": 75335, "atom2_serNum": 75395, "donAcc_type": "acceptable", "distance": 2.628, "atom1_id": "///T/28/OG1", "atom2_id": "///T/37/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7147, "atom1_serNum": 75335, "atom2_serNum": 75410, "donAcc_type": "acceptable", "distance": 3.411, "atom1_id": "///T/28/OG1", "atom2_id": "///T/39/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7148, "atom1_serNum": 75346, "atom2_serNum": 75374, "donAcc_type": "standard", "distance": 3.407, "atom1_id": "///T/30/N", "atom2_id": "///T/34/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7149, "atom1_serNum": 75349, "atom2_serNum": 75368, "donAcc_type": "questionable", "distance": 2.624, "atom1_id": "///T/30/O", "atom2_id": "///T/33/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7150, "atom1_serNum": 75364, "atom2_serNum": 75474, "donAcc_type": "acceptable", "distance": 3.248, "atom1_id": "///T/32/OG", "atom2_id": "///T/48/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7151, "atom1_serNum": 75400, "atom2_serNum": 75421, "donAcc_type": "standard", "distance": 3.142, "atom1_id": "///T/38/O", "atom2_id": "///T/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7152, "atom1_serNum": 75400, "atom2_serNum": 75424, "donAcc_type": "questionable", "distance": 2.926, "atom1_id": "///T/38/O", "atom2_id": "///T/41/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7153, "atom1_serNum": 75408, "atom2_serNum": 75421, "donAcc_type": "standard", "distance": 2.591, "atom1_id": "///T/39/O", "atom2_id": "///T/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7154, "atom1_serNum": 75442, "atom2_serNum": 75465, "donAcc_type": "standard", "distance": 2.809, "atom1_id": "///T/43/O", "atom2_id": "///T/47/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7155, "atom1_serNum": 75468, "atom2_serNum": 75512, "donAcc_type": "standard", "distance": 3.097, "atom1_id": "///T/47/O", "atom2_id": "///T/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7156, "atom1_serNum": 75475, "atom2_serNum": 75502, "donAcc_type": "standard", "distance": 2.731, "atom1_id": "///T/49/N", "atom2_id": "///T/52/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7157, "atom1_serNum": 75478, "atom2_serNum": 75499, "donAcc_type": "standard", "distance": 2.802, "atom1_id": "///T/49/O", "atom2_id": "///T/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7158, "atom1_serNum": 75478, "atom2_serNum": 75502, "donAcc_type": "questionable", "distance": 2.714, "atom1_id": "///T/49/O", "atom2_id": "///T/52/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7159, "atom1_serNum": 75524, "atom2_serNum": 75538, "donAcc_type": "standard", "distance": 3.038, "atom1_id": "///U/1/O", "atom2_id": "///U/3/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7160, "atom1_serNum": 75541, "atom2_serNum": 75575, "donAcc_type": "standard", "distance": 2.622, "atom1_id": "///U/3/O", "atom2_id": "///U/6/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7161, "atom1_serNum": 75559, "atom2_serNum": 75576, "donAcc_type": "standard", "distance": 3.283, "atom1_id": "///U/5/O", "atom2_id": "///U/7/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7162, "atom1_serNum": 75586, "atom2_serNum": 75619, "donAcc_type": "standard", "distance": 3.261, "atom1_id": "///U/8/O", "atom2_id": "///U/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7163, "atom1_serNum": 75589, "atom2_serNum": 75610, "donAcc_type": "standard", "distance": 2.472, "atom1_id": "///U/8/OD1", "atom2_id": "///U/11/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7164, "atom1_serNum": 75594, "atom2_serNum": 75630, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///U/9/O", "atom2_id": "///U/13/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7165, "atom1_serNum": 75594, "atom2_serNum": 75635, "donAcc_type": "acceptable", "distance": 2.573, "atom1_id": "///U/9/O", "atom2_id": "///U/13/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7166, "atom1_serNum": 75602, "atom2_serNum": 75635, "donAcc_type": "acceptable", "distance": 2.928, "atom1_id": "///U/10/O", "atom2_id": "///U/13/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7167, "atom1_serNum": 75602, "atom2_serNum": 75636, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///U/10/O", "atom2_id": "///U/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7168, "atom1_serNum": 75613, "atom2_serNum": 75645, "donAcc_type": "standard", "distance": 3.100, "atom1_id": "///U/11/O", "atom2_id": "///U/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7169, "atom1_serNum": 75622, "atom2_serNum": 75652, "donAcc_type": "standard", "distance": 2.945, "atom1_id": "///U/12/O", "atom2_id": "///U/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7170, "atom1_serNum": 75655, "atom2_serNum": 75878, "donAcc_type": "acceptable", "distance": 3.489, "atom1_id": "///U/16/O", "atom2_id": "///U/43/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7171, "atom1_serNum": 75665, "atom2_serNum": 75694, "donAcc_type": "standard", "distance": 2.951, "atom1_id": "///U/17/O", "atom2_id": "///U/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7172, "atom1_serNum": 75669, "atom2_serNum": 75705, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///U/18/O", "atom2_id": "///U/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7173, "atom1_serNum": 75680, "atom2_serNum": 75713, "donAcc_type": "standard", "distance": 3.110, "atom1_id": "///U/19/O", "atom2_id": "///U/23/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7174, "atom1_serNum": 75691, "atom2_serNum": 75718, "donAcc_type": "acceptable", "distance": 2.875, "atom1_id": "///U/20/O", "atom2_id": "///U/23/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7175, "atom1_serNum": 75708, "atom2_serNum": 75749, "donAcc_type": "standard", "distance": 3.413, "atom1_id": "///U/22/O", "atom2_id": "///U/28/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7176, "atom1_serNum": 75722, "atom2_serNum": 75742, "donAcc_type": "standard", "distance": 3.469, "atom1_id": "///U/24/O", "atom2_id": "///U/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7177, "atom1_serNum": 75728, "atom2_serNum": 75742, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///U/25/O", "atom2_id": "///U/28/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7178, "atom1_serNum": 75728, "atom2_serNum": 75753, "donAcc_type": "standard", "distance": 2.985, "atom1_id": "///U/25/O", "atom2_id": "///U/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7179, "atom1_serNum": 75733, "atom2_serNum": 75761, "donAcc_type": "standard", "distance": 3.125, "atom1_id": "///U/26/O", "atom2_id": "///U/30/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7180, "atom1_serNum": 75741, "atom2_serNum": 75768, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///U/27/O", "atom2_id": "///U/31/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7181, "atom1_serNum": 75745, "atom2_serNum": 75776, "donAcc_type": "standard", "distance": 2.947, "atom1_id": "///U/28/O", "atom2_id": "///U/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7182, "atom1_serNum": 75756, "atom2_serNum": 75781, "donAcc_type": "standard", "distance": 2.888, "atom1_id": "///U/29/O", "atom2_id": "///U/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7183, "atom1_serNum": 75764, "atom2_serNum": 75792, "donAcc_type": "standard", "distance": 2.953, "atom1_id": "///U/30/O", "atom2_id": "///U/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7184, "atom1_serNum": 75771, "atom2_serNum": 75803, "donAcc_type": "standard", "distance": 3.022, "atom1_id": "///U/31/O", "atom2_id": "///U/35/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7185, "atom1_serNum": 75779, "atom2_serNum": 75814, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///U/32/O", "atom2_id": "///U/36/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7186, "atom1_serNum": 75784, "atom2_serNum": 75825, "donAcc_type": "standard", "distance": 3.084, "atom1_id": "///U/33/O", "atom2_id": "///U/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7187, "atom1_serNum": 75795, "atom2_serNum": 75834, "donAcc_type": "standard", "distance": 3.183, "atom1_id": "///U/34/O", "atom2_id": "///U/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7188, "atom1_serNum": 75795, "atom2_serNum": 75838, "donAcc_type": "standard", "distance": 3.398, "atom1_id": "///U/34/O", "atom2_id": "///U/39/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7189, "atom1_serNum": 75802, "atom2_serNum": 75861, "donAcc_type": "standard", "distance": 3.122, "atom1_id": "///U/34/NH2", "atom2_id": "///U/41/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7190, "atom1_serNum": 75888, "atom2_serNum": 75912, "donAcc_type": "standard", "distance": 2.863, "atom1_id": "///V/7/O", "atom2_id": "///V/11/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7191, "atom1_serNum": 75897, "atom2_serNum": 75923, "donAcc_type": "standard", "distance": 2.759, "atom1_id": "///V/8/O", "atom2_id": "///V/12/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7192, "atom1_serNum": 75900, "atom2_serNum": 75919, "donAcc_type": "standard", "distance": 3.618, "atom1_id": "///V/8/OD1", "atom2_id": "///V/11/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7193, "atom1_serNum": 75905, "atom2_serNum": 75931, "donAcc_type": "standard", "distance": 3.394, "atom1_id": "///V/9/O", "atom2_id": "///V/13/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7194, "atom1_serNum": 75910, "atom2_serNum": 75940, "donAcc_type": "standard", "distance": 3.274, "atom1_id": "///V/10/O", "atom2_id": "///V/14/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7195, "atom1_serNum": 75915, "atom2_serNum": 75945, "donAcc_type": "standard", "distance": 2.510, "atom1_id": "///V/11/O", "atom2_id": "///V/15/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7196, "atom1_serNum": 75926, "atom2_serNum": 75955, "donAcc_type": "standard", "distance": 2.632, "atom1_id": "///V/12/O", "atom2_id": "///V/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7197, "atom1_serNum": 75934, "atom2_serNum": 75960, "donAcc_type": "standard", "distance": 3.518, "atom1_id": "///V/13/O", "atom2_id": "///V/17/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7198, "atom1_serNum": 75948, "atom2_serNum": 75965, "donAcc_type": "standard", "distance": 3.139, "atom1_id": "///V/15/O", "atom2_id": "///V/18/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7199, "atom1_serNum": 75948, "atom2_serNum": 75972, "donAcc_type": "standard", "distance": 3.398, "atom1_id": "///V/15/O", "atom2_id": "///V/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7200, "atom1_serNum": 75958, "atom2_serNum": 75983, "donAcc_type": "standard", "distance": 3.124, "atom1_id": "///V/16/O", "atom2_id": "///V/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7201, "atom1_serNum": 75968, "atom2_serNum": 75997, "donAcc_type": "standard", "distance": 3.116, "atom1_id": "///V/18/O", "atom2_id": "///V/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7202, "atom1_serNum": 76008, "atom2_serNum": 76055, "donAcc_type": "standard", "distance": 2.907, "atom1_id": "///V/23/O", "atom2_id": "///V/30/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7203, "atom1_serNum": 76014, "atom2_serNum": 76046, "donAcc_type": "standard", "distance": 3.182, "atom1_id": "///V/24/O", "atom2_id": "///V/30/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7204, "atom1_serNum": 76042, "atom2_serNum": 76434, "donAcc_type": "standard", "distance": 3.172, "atom1_id": "///V/29/O", "atom2_id": "///V/94/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7205, "atom1_serNum": 76046, "atom2_serNum": 76162, "donAcc_type": "standard", "distance": 2.722, "atom1_id": "///V/30/N", "atom2_id": "///V/45/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7206, "atom1_serNum": 76049, "atom2_serNum": 76159, "donAcc_type": "standard", "distance": 3.183, "atom1_id": "///V/30/O", "atom2_id": "///V/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7207, "atom1_serNum": 76057, "atom2_serNum": 76437, "donAcc_type": "standard", "distance": 3.761, "atom1_id": "///V/31/N", "atom2_id": "///V/94/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7208, "atom1_serNum": 76065, "atom2_serNum": 76150, "donAcc_type": "standard", "distance": 2.754, "atom1_id": "///V/32/O", "atom2_id": "///V/43/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7209, "atom1_serNum": 76077, "atom2_serNum": 76135, "donAcc_type": "standard", "distance": 2.786, "atom1_id": "///V/34/N", "atom2_id": "///V/41/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7210, "atom1_serNum": 76080, "atom2_serNum": 76132, "donAcc_type": "standard", "distance": 2.871, "atom1_id": "///V/34/O", "atom2_id": "///V/41/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7211, "atom1_serNum": 76091, "atom2_serNum": 76484, "donAcc_type": "acceptable", "distance": 3.010, "atom1_id": "///V/35/O", "atom2_id": "///V/100/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7212, "atom1_serNum": 76099, "atom2_serNum": 76120, "donAcc_type": "standard", "distance": 3.175, "atom1_id": "///V/36/N", "atom2_id": "///V/39/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7213, "atom1_serNum": 76104, "atom2_serNum": 76110, "donAcc_type": "standard", "distance": 2.633, "atom1_id": "///V/37/N", "atom2_id": "///V/37/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7214, "atom1_serNum": 76110, "atom2_serNum": 76112, "donAcc_type": "standard", "distance": 2.710, "atom1_id": "///V/37/OD1", "atom2_id": "///V/38/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7215, "atom1_serNum": 76123, "atom2_serNum": 76248, "donAcc_type": "acceptable", "distance": 2.620, "atom1_id": "///V/39/ND1", "atom2_id": "///V/58/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7216, "atom1_serNum": 76127, "atom2_serNum": 76248, "donAcc_type": "acceptable", "distance": 3.751, "atom1_id": "///V/40/N", "atom2_id": "///V/58/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7217, "atom1_serNum": 76130, "atom2_serNum": 76243, "donAcc_type": "standard", "distance": 3.246, "atom1_id": "///V/40/O", "atom2_id": "///V/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7218, "atom1_serNum": 76137, "atom2_serNum": 76235, "donAcc_type": "standard", "distance": 2.841, "atom1_id": "///V/42/N", "atom2_id": "///V/56/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7219, "atom1_serNum": 76140, "atom2_serNum": 76232, "donAcc_type": "standard", "distance": 2.811, "atom1_id": "///V/42/O", "atom2_id": "///V/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7220, "atom1_serNum": 76140, "atom2_serNum": 76235, "donAcc_type": "questionable", "distance": 2.802, "atom1_id": "///V/42/O", "atom2_id": "///V/56/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7221, "atom1_serNum": 76151, "atom2_serNum": 76224, "donAcc_type": "standard", "distance": 2.477, "atom1_id": "///V/44/N", "atom2_id": "///V/54/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7222, "atom1_serNum": 76154, "atom2_serNum": 76211, "donAcc_type": "acceptable", "distance": 2.406, "atom1_id": "///V/44/O", "atom2_id": "///V/52/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7223, "atom1_serNum": 76154, "atom2_serNum": 76213, "donAcc_type": "standard", "distance": 2.813, "atom1_id": "///V/44/O", "atom2_id": "///V/53/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7224, "atom1_serNum": 76167, "atom2_serNum": 76202, "donAcc_type": "standard", "distance": 3.454, "atom1_id": "///V/46/N", "atom2_id": "///V/51/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7225, "atom1_serNum": 76170, "atom2_serNum": 76193, "donAcc_type": "questionable", "distance": 2.990, "atom1_id": "///V/46/O", "atom2_id": "///V/49/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7226, "atom1_serNum": 76170, "atom2_serNum": 76195, "donAcc_type": "standard", "distance": 3.305, "atom1_id": "///V/46/O", "atom2_id": "///V/50/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7227, "atom1_serNum": 76229, "atom2_serNum": 76373, "donAcc_type": "standard", "distance": 2.861, "atom1_id": "///V/55/O", "atom2_id": "///V/84/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7228, "atom1_serNum": 76229, "atom2_serNum": 76376, "donAcc_type": "standard", "distance": 2.629, "atom1_id": "///V/55/O", "atom2_id": "///V/84/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7229, "atom1_serNum": 76237, "atom2_serNum": 76265, "donAcc_type": "standard", "distance": 3.206, "atom1_id": "///V/57/N", "atom2_id": "///V/60/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7230, "atom1_serNum": 76240, "atom2_serNum": 76258, "donAcc_type": "standard", "distance": 3.038, "atom1_id": "///V/57/O", "atom2_id": "///V/60/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7231, "atom1_serNum": 76242, "atom2_serNum": 76250, "donAcc_type": "acceptable", "distance": 3.171, "atom1_id": "///V/57/OG", "atom2_id": "///V/59/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7232, "atom1_serNum": 76273, "atom2_serNum": 76296, "donAcc_type": "standard", "distance": 3.163, "atom1_id": "///V/70/O", "atom2_id": "///V/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7233, "atom1_serNum": 76276, "atom2_serNum": 76290, "donAcc_type": "acceptable", "distance": 2.469, "atom1_id": "///V/70/OD1", "atom2_id": "///V/72/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7234, "atom1_serNum": 76276, "atom2_serNum": 76291, "donAcc_type": "standard", "distance": 2.772, "atom1_id": "///V/70/OD1", "atom2_id": "///V/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7235, "atom1_serNum": 76281, "atom2_serNum": 76301, "donAcc_type": "standard", "distance": 3.708, "atom1_id": "///V/71/O", "atom2_id": "///V/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7236, "atom1_serNum": 76288, "atom2_serNum": 76306, "donAcc_type": "acceptable", "distance": 2.898, "atom1_id": "///V/72/O", "atom2_id": "///V/75/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7237, "atom1_serNum": 76294, "atom2_serNum": 76317, "donAcc_type": "standard", "distance": 3.452, "atom1_id": "///V/73/O", "atom2_id": "///V/77/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7238, "atom1_serNum": 76299, "atom2_serNum": 76324, "donAcc_type": "standard", "distance": 2.966, "atom1_id": "///V/74/O", "atom2_id": "///V/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7239, "atom1_serNum": 76304, "atom2_serNum": 76328, "donAcc_type": "standard", "distance": 2.781, "atom1_id": "///V/75/O", "atom2_id": "///V/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7240, "atom1_serNum": 76311, "atom2_serNum": 76337, "donAcc_type": "standard", "distance": 2.982, "atom1_id": "///V/76/O", "atom2_id": "///V/80/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7241, "atom1_serNum": 76320, "atom2_serNum": 76345, "donAcc_type": "standard", "distance": 2.700, "atom1_id": "///V/77/O", "atom2_id": "///V/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7242, "atom1_serNum": 76327, "atom2_serNum": 76352, "donAcc_type": "standard", "distance": 3.457, "atom1_id": "///V/78/O", "atom2_id": "///V/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7243, "atom1_serNum": 76331, "atom2_serNum": 76357, "donAcc_type": "standard", "distance": 2.816, "atom1_id": "///V/79/O", "atom2_id": "///V/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7244, "atom1_serNum": 76340, "atom2_serNum": 76366, "donAcc_type": "standard", "distance": 2.512, "atom1_id": "///V/80/O", "atom2_id": "///V/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7245, "atom1_serNum": 76348, "atom2_serNum": 76377, "donAcc_type": "standard", "distance": 2.741, "atom1_id": "///V/81/O", "atom2_id": "///V/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7246, "atom1_serNum": 76355, "atom2_serNum": 76382, "donAcc_type": "standard", "distance": 2.983, "atom1_id": "///V/82/O", "atom2_id": "///V/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7247, "atom1_serNum": 76360, "atom2_serNum": 76382, "donAcc_type": "standard", "distance": 2.588, "atom1_id": "///V/83/O", "atom2_id": "///V/86/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7248, "atom1_serNum": 76360, "atom2_serNum": 76387, "donAcc_type": "standard", "distance": 3.436, "atom1_id": "///V/83/O", "atom2_id": "///V/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7249, "atom1_serNum": 76380, "atom2_serNum": 76396, "donAcc_type": "standard", "distance": 2.775, "atom1_id": "///V/85/O", "atom2_id": "///V/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7250, "atom1_serNum": 76380, "atom2_serNum": 76401, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///V/85/O", "atom2_id": "///V/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7251, "atom1_serNum": 76416, "atom2_serNum": 76604, "donAcc_type": "standard", "distance": 2.475, "atom1_id": "///V/91/O", "atom2_id": "///V/119/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7252, "atom1_serNum": 76427, "atom2_serNum": 76607, "donAcc_type": "standard", "distance": 3.097, "atom1_id": "///V/93/N", "atom2_id": "///V/119/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7253, "atom1_serNum": 76452, "atom2_serNum": 76454, "donAcc_type": "standard", "distance": 2.700, "atom1_id": "///V/96/OD1", "atom2_id": "///V/97/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7254, "atom1_serNum": 76452, "atom2_serNum": 76465, "donAcc_type": "standard", "distance": 3.152, "atom1_id": "///V/96/OD1", "atom2_id": "///V/98/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7255, "atom1_serNum": 76457, "atom2_serNum": 76469, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///V/97/O", "atom2_id": "///V/99/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7256, "atom1_serNum": 76457, "atom2_serNum": 76473, "donAcc_type": "standard", "distance": 2.726, "atom1_id": "///V/97/O", "atom2_id": "///V/100/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7257, "atom1_serNum": 76461, "atom2_serNum": 76476, "donAcc_type": "standard", "distance": 2.748, "atom1_id": "///V/97/NE", "atom2_id": "///V/100/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7258, "atom1_serNum": 76464, "atom2_serNum": 76476, "donAcc_type": "standard", "distance": 3.089, "atom1_id": "///V/97/NH2", "atom2_id": "///V/100/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7259, "atom1_serNum": 76518, "atom2_serNum": 76531, "donAcc_type": "standard", "distance": 2.678, "atom1_id": "///V/104/O", "atom2_id": "///V/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7260, "atom1_serNum": 76518, "atom2_serNum": 76540, "donAcc_type": "standard", "distance": 3.342, "atom1_id": "///V/104/O", "atom2_id": "///V/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7261, "atom1_serNum": 76522, "atom2_serNum": 76545, "donAcc_type": "standard", "distance": 3.451, "atom1_id": "///V/105/O", "atom2_id": "///V/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7262, "atom1_serNum": 76527, "atom2_serNum": 76550, "donAcc_type": "standard", "distance": 3.865, "atom1_id": "///V/106/O", "atom2_id": "///V/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7263, "atom1_serNum": 76534, "atom2_serNum": 76555, "donAcc_type": "standard", "distance": 2.632, "atom1_id": "///V/107/O", "atom2_id": "///V/111/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7264, "atom1_serNum": 76543, "atom2_serNum": 76563, "donAcc_type": "standard", "distance": 2.617, "atom1_id": "///V/108/O", "atom2_id": "///V/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7265, "atom1_serNum": 76548, "atom2_serNum": 76568, "donAcc_type": "standard", "distance": 2.360, "atom1_id": "///V/109/O", "atom2_id": "///V/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7266, "atom1_serNum": 76553, "atom2_serNum": 76573, "donAcc_type": "standard", "distance": 2.987, "atom1_id": "///V/110/O", "atom2_id": "///V/114/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7267, "atom1_serNum": 76558, "atom2_serNum": 76578, "donAcc_type": "standard", "distance": 3.268, "atom1_id": "///V/111/O", "atom2_id": "///V/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7268, "atom1_serNum": 76566, "atom2_serNum": 76585, "donAcc_type": "questionable", "distance": 3.164, "atom1_id": "///V/112/O", "atom2_id": "///V/115/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7269, "atom1_serNum": 76571, "atom2_serNum": 76587, "donAcc_type": "standard", "distance": 3.042, "atom1_id": "///V/113/O", "atom2_id": "///V/116/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7270, "atom1_serNum": 76576, "atom2_serNum": 76592, "donAcc_type": "standard", "distance": 3.282, "atom1_id": "///V/114/O", "atom2_id": "///V/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7271, "atom1_serNum": 76637, "atom2_serNum": 76989, "donAcc_type": "standard", "distance": 3.312, "atom1_id": "///W/4/O", "atom2_id": "///W/54/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7272, "atom1_serNum": 76644, "atom2_serNum": 77166, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///W/5/O", "atom2_id": "///W/84/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7273, "atom1_serNum": 76644, "atom2_serNum": 77174, "donAcc_type": "standard", "distance": 3.725, "atom1_id": "///W/5/O", "atom2_id": "///W/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7274, "atom1_serNum": 76651, "atom2_serNum": 77005, "donAcc_type": "standard", "distance": 2.564, "atom1_id": "///W/6/O", "atom2_id": "///W/56/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7275, "atom1_serNum": 76655, "atom2_serNum": 77177, "donAcc_type": "standard", "distance": 3.901, "atom1_id": "///W/7/N", "atom2_id": "///W/85/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7276, "atom1_serNum": 76658, "atom2_serNum": 77189, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///W/7/O", "atom2_id": "///W/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7277, "atom1_serNum": 76660, "atom2_serNum": 77008, "donAcc_type": "standard", "distance": 2.932, "atom1_id": "///W/8/N", "atom2_id": "///W/56/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7278, "atom1_serNum": 76663, "atom2_serNum": 77026, "donAcc_type": "acceptable", "distance": 2.466, "atom1_id": "///W/8/O", "atom2_id": "///W/58/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7279, "atom1_serNum": 76668, "atom2_serNum": 77192, "donAcc_type": "standard", "distance": 3.210, "atom1_id": "///W/9/N", "atom2_id": "///W/87/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7280, "atom1_serNum": 76671, "atom2_serNum": 77208, "donAcc_type": "standard", "distance": 3.406, "atom1_id": "///W/9/O", "atom2_id": "///W/89/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7281, "atom1_serNum": 76682, "atom2_serNum": 81441, "donAcc_type": "acceptable", "distance": 3.269, "atom1_id": "///W/11/O", "atom2_id": "///W/502/O1G", "atom_pair": "O:O", "residue_pair": "aa:ligand" }, { "index": 7282, "atom1_serNum": 76691, "atom2_serNum": 81441, "donAcc_type": "acceptable", "distance": 2.779, "atom1_id": "///W/13/N", "atom2_id": "///W/502/O1G", "atom_pair": "N:O", "residue_pair": "aa:ligand" }, { "index": 7283, "atom1_serNum": 76697, "atom2_serNum": 76832, "donAcc_type": "questionable", "distance": 2.944, "atom1_id": "///W/13/OD1", "atom2_id": "///W/33/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7284, "atom1_serNum": 76699, "atom2_serNum": 81442, "donAcc_type": "acceptable", "distance": 3.137, "atom1_id": "///W/14/N", "atom2_id": "///W/502/O2G", "atom_pair": "N:O", "residue_pair": "aa:ligand" }, { "index": 7285, "atom1_serNum": 76709, "atom2_serNum": 76728, "donAcc_type": "standard", "distance": 2.694, "atom1_id": "///W/15/O", "atom2_id": "///W/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7286, "atom1_serNum": 76710, "atom2_serNum": 81442, "donAcc_type": "acceptable", "distance": 2.511, "atom1_id": "///W/16/N", "atom2_id": "///W/502/O2G", "atom_pair": "N:O", "residue_pair": "aa:ligand" }, { "index": 7287, "atom1_serNum": 76713, "atom2_serNum": 76736, "donAcc_type": "standard", "distance": 2.800, "atom1_id": "///W/16/O", "atom2_id": "///W/20/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7288, "atom1_serNum": 76718, "atom2_serNum": 76747, "donAcc_type": "standard", "distance": 2.919, "atom1_id": "///W/17/O", "atom2_id": "///W/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7289, "atom1_serNum": 76720, "atom2_serNum": 76802, "donAcc_type": "acceptable", "distance": 3.093, "atom1_id": "///W/17/OG", "atom2_id": "///W/29/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7290, "atom1_serNum": 76721, "atom2_serNum": 81450, "donAcc_type": "acceptable", "distance": 2.656, "atom1_id": "///W/18/N", "atom2_id": "///W/502/O1A", "atom_pair": "N:O", "residue_pair": "aa:ligand" }, { "index": 7291, "atom1_serNum": 76724, "atom2_serNum": 76752, "donAcc_type": "standard", "distance": 2.926, "atom1_id": "///W/18/O", "atom2_id": "///W/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7292, "atom1_serNum": 76726, "atom2_serNum": 81450, "donAcc_type": "acceptable", "distance": 2.627, "atom1_id": "///W/18/OG1", "atom2_id": "///W/502/O1A", "atom_pair": "O:O", "residue_pair": "aa:ligand" }, { "index": 7293, "atom1_serNum": 76731, "atom2_serNum": 76752, "donAcc_type": "standard", "distance": 2.689, "atom1_id": "///W/19/O", "atom2_id": "///W/22/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7294, "atom1_serNum": 76731, "atom2_serNum": 76763, "donAcc_type": "standard", "distance": 2.839, "atom1_id": "///W/19/O", "atom2_id": "///W/23/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7295, "atom1_serNum": 76739, "atom2_serNum": 76771, "donAcc_type": "standard", "distance": 3.368, "atom1_id": "///W/20/O", "atom2_id": "///W/24/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7296, "atom1_serNum": 76750, "atom2_serNum": 76779, "donAcc_type": "questionable", "distance": 2.639, "atom1_id": "///W/21/O", "atom2_id": "///W/25/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7297, "atom1_serNum": 76759, "atom2_serNum": 77617, "donAcc_type": "standard", "distance": 3.876, "atom1_id": "///W/22/NE", "atom2_id": "///W/146/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7298, "atom1_serNum": 76788, "atom2_serNum": 78296, "donAcc_type": "standard", "distance": 3.181, "atom1_id": "///W/26/OE2", "atom2_id": "///W/250/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7299, "atom1_serNum": 76792, "atom2_serNum": 78293, "donAcc_type": "standard", "distance": 3.002, "atom1_id": "///W/27/O", "atom2_id": "///W/250/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7300, "atom1_serNum": 76797, "atom2_serNum": 78296, "donAcc_type": "standard", "distance": 3.062, "atom1_id": "///W/28/O", "atom2_id": "///W/250/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7301, "atom1_serNum": 76804, "atom2_serNum": 78270, "donAcc_type": "acceptable", "distance": 3.465, "atom1_id": "///W/29/OG", "atom2_id": "///W/247/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7302, "atom1_serNum": 76829, "atom2_serNum": 76835, "donAcc_type": "standard", "distance": 2.657, "atom1_id": "///W/33/N", "atom2_id": "///W/33/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7303, "atom1_serNum": 76847, "atom2_serNum": 76855, "donAcc_type": "standard", "distance": 3.058, "atom1_id": "///W/35/O", "atom2_id": "///W/37/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7304, "atom1_serNum": 76854, "atom2_serNum": 81447, "donAcc_type": "acceptable", "distance": 3.462, "atom1_id": "///W/36/O", "atom2_id": "///W/502/O2B", "atom_pair": "O:O", "residue_pair": "aa:ligand" }, { "index": 7305, "atom1_serNum": 76867, "atom2_serNum": 77020, "donAcc_type": "acceptable", "distance": 3.235, "atom1_id": "///W/38/OG1", "atom2_id": "///W/57/OD2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7306, "atom1_serNum": 76867, "atom2_serNum": 77024, "donAcc_type": "acceptable", "distance": 2.508, "atom1_id": "///W/38/OG1", "atom2_id": "///W/58/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7307, "atom1_serNum": 76878, "atom2_serNum": 77981, "donAcc_type": "standard", "distance": 3.247, "atom1_id": "///W/39/NH1", "atom2_id": "///W/209/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7308, "atom1_serNum": 76891, "atom2_serNum": 77925, "donAcc_type": "standard", "distance": 2.998, "atom1_id": "///W/41/O", "atom2_id": "///W/200/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7309, "atom1_serNum": 76895, "atom2_serNum": 77113, "donAcc_type": "standard", "distance": 2.697, "atom1_id": "///W/41/NE", "atom2_id": "///W/75/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7310, "atom1_serNum": 76897, "atom2_serNum": 76918, "donAcc_type": "acceptable", "distance": 3.122, "atom1_id": "///W/41/NH1", "atom2_id": "///W/43/OH", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7311, "atom1_serNum": 76899, "atom2_serNum": 77016, "donAcc_type": "standard", "distance": 3.567, "atom1_id": "///W/42/N", "atom2_id": "///W/57/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7312, "atom1_serNum": 76902, "atom2_serNum": 77000, "donAcc_type": "questionable", "distance": 3.207, "atom1_id": "///W/42/O", "atom2_id": "///W/55/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7313, "atom1_serNum": 76902, "atom2_serNum": 77013, "donAcc_type": "standard", "distance": 3.509, "atom1_id": "///W/42/O", "atom2_id": "///W/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7314, "atom1_serNum": 76919, "atom2_serNum": 77000, "donAcc_type": "standard", "distance": 3.639, "atom1_id": "///W/44/N", "atom2_id": "///W/55/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7315, "atom1_serNum": 76922, "atom2_serNum": 76995, "donAcc_type": "questionable", "distance": 2.792, "atom1_id": "///W/44/O", "atom2_id": "///W/54/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7316, "atom1_serNum": 76930, "atom2_serNum": 76995, "donAcc_type": "acceptable", "distance": 3.259, "atom1_id": "///W/45/OG", "atom2_id": "///W/54/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7317, "atom1_serNum": 76931, "atom2_serNum": 76987, "donAcc_type": "standard", "distance": 3.000, "atom1_id": "///W/46/N", "atom2_id": "///W/53/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7318, "atom1_serNum": 76941, "atom2_serNum": 76974, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///W/48/N", "atom2_id": "///W/51/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7319, "atom1_serNum": 76949, "atom2_serNum": 77693, "donAcc_type": "standard", "distance": 3.348, "atom1_id": "///W/48/NE1", "atom2_id": "///W/157/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7320, "atom1_serNum": 76976, "atom2_serNum": 76982, "donAcc_type": "standard", "distance": 2.744, "atom1_id": "///W/52/N", "atom2_id": "///W/52/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7321, "atom1_serNum": 77057, "atom2_serNum": 77086, "donAcc_type": "standard", "distance": 3.153, "atom1_id": "///W/69/O", "atom2_id": "///W/73/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7322, "atom1_serNum": 77065, "atom2_serNum": 77097, "donAcc_type": "standard", "distance": 2.859, "atom1_id": "///W/70/O", "atom2_id": "///W/74/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7323, "atom1_serNum": 77069, "atom2_serNum": 77076, "donAcc_type": "standard", "distance": 2.794, "atom1_id": "///W/71/N", "atom2_id": "///W/71/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7324, "atom1_serNum": 77072, "atom2_serNum": 77106, "donAcc_type": "standard", "distance": 2.797, "atom1_id": "///W/71/O", "atom2_id": "///W/75/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7325, "atom1_serNum": 77081, "atom2_serNum": 77115, "donAcc_type": "standard", "distance": 2.836, "atom1_id": "///W/72/O", "atom2_id": "///W/76/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7326, "atom1_serNum": 77089, "atom2_serNum": 77120, "donAcc_type": "standard", "distance": 3.011, "atom1_id": "///W/73/O", "atom2_id": "///W/77/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7327, "atom1_serNum": 77100, "atom2_serNum": 77129, "donAcc_type": "standard", "distance": 2.977, "atom1_id": "///W/74/O", "atom2_id": "///W/78/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7328, "atom1_serNum": 77109, "atom2_serNum": 77134, "donAcc_type": "standard", "distance": 3.097, "atom1_id": "///W/75/O", "atom2_id": "///W/79/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7329, "atom1_serNum": 77118, "atom2_serNum": 77139, "donAcc_type": "standard", "distance": 2.727, "atom1_id": "///W/76/O", "atom2_id": "///W/80/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7330, "atom1_serNum": 77123, "atom2_serNum": 77144, "donAcc_type": "standard", "distance": 3.225, "atom1_id": "///W/77/O", "atom2_id": "///W/81/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7331, "atom1_serNum": 77132, "atom2_serNum": 77152, "donAcc_type": "standard", "distance": 3.571, "atom1_id": "///W/78/O", "atom2_id": "///W/82/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7332, "atom1_serNum": 77137, "atom2_serNum": 77161, "donAcc_type": "standard", "distance": 3.304, "atom1_id": "///W/79/O", "atom2_id": "///W/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7333, "atom1_serNum": 77142, "atom2_serNum": 77161, "donAcc_type": "standard", "distance": 3.526, "atom1_id": "///W/80/O", "atom2_id": "///W/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7334, "atom1_serNum": 77164, "atom2_serNum": 77385, "donAcc_type": "standard", "distance": 3.025, "atom1_id": "///W/83/O", "atom2_id": "///W/112/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7335, "atom1_serNum": 77181, "atom2_serNum": 77389, "donAcc_type": "standard", "distance": 2.866, "atom1_id": "///W/86/N", "atom2_id": "///W/113/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7336, "atom1_serNum": 77184, "atom2_serNum": 77400, "donAcc_type": "standard", "distance": 2.776, "atom1_id": "///W/86/O", "atom2_id": "///W/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7337, "atom1_serNum": 77197, "atom2_serNum": 77403, "donAcc_type": "standard", "distance": 3.013, "atom1_id": "///W/88/N", "atom2_id": "///W/115/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7338, "atom1_serNum": 77200, "atom2_serNum": 77415, "donAcc_type": "standard", "distance": 3.158, "atom1_id": "///W/88/O", "atom2_id": "///W/117/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7339, "atom1_serNum": 77213, "atom2_serNum": 77418, "donAcc_type": "standard", "distance": 3.261, "atom1_id": "///W/90/N", "atom2_id": "///W/117/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7340, "atom1_serNum": 77216, "atom2_serNum": 77427, "donAcc_type": "standard", "distance": 3.178, "atom1_id": "///W/90/O", "atom2_id": "///W/119/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7341, "atom1_serNum": 77226, "atom2_serNum": 77228, "donAcc_type": "standard", "distance": 2.545, "atom1_id": "///W/91/OD1", "atom2_id": "///W/92/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7342, "atom1_serNum": 77226, "atom2_serNum": 77232, "donAcc_type": "standard", "distance": 2.783, "atom1_id": "///W/91/OD1", "atom2_id": "///W/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7343, "atom1_serNum": 77228, "atom2_serNum": 77430, "donAcc_type": "standard", "distance": 3.178, "atom1_id": "///W/92/N", "atom2_id": "///W/119/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7344, "atom1_serNum": 77257, "atom2_serNum": 77282, "donAcc_type": "standard", "distance": 2.289, "atom1_id": "///W/97/N", "atom2_id": "///W/100/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7345, "atom1_serNum": 77267, "atom2_serNum": 77290, "donAcc_type": "questionable", "distance": 2.670, "atom1_id": "///W/98/O", "atom2_id": "///W/101/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7346, "atom1_serNum": 77267, "atom2_serNum": 77292, "donAcc_type": "standard", "distance": 2.988, "atom1_id": "///W/98/O", "atom2_id": "///W/102/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7347, "atom1_serNum": 77269, "atom2_serNum": 80273, "donAcc_type": "acceptable", "distance": 3.364, "atom1_id": "///W/98/OG", "atom2_id": "///Y/52/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7348, "atom1_serNum": 77273, "atom2_serNum": 77301, "donAcc_type": "standard", "distance": 2.956, "atom1_id": "///W/99/O", "atom2_id": "///W/103/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7349, "atom1_serNum": 77278, "atom2_serNum": 77308, "donAcc_type": "standard", "distance": 2.873, "atom1_id": "///W/100/O", "atom2_id": "///W/104/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7350, "atom1_serNum": 77283, "atom2_serNum": 77290, "donAcc_type": "standard", "distance": 3.099, "atom1_id": "///W/101/N", "atom2_id": "///W/101/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7351, "atom1_serNum": 77286, "atom2_serNum": 77313, "donAcc_type": "standard", "distance": 2.808, "atom1_id": "///W/101/O", "atom2_id": "///W/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7352, "atom1_serNum": 77295, "atom2_serNum": 77322, "donAcc_type": "standard", "distance": 3.996, "atom1_id": "///W/102/O", "atom2_id": "///W/106/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7353, "atom1_serNum": 77304, "atom2_serNum": 77330, "donAcc_type": "standard", "distance": 3.007, "atom1_id": "///W/103/O", "atom2_id": "///W/107/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7354, "atom1_serNum": 77311, "atom2_serNum": 77338, "donAcc_type": "standard", "distance": 2.879, "atom1_id": "///W/104/O", "atom2_id": "///W/108/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7355, "atom1_serNum": 77316, "atom2_serNum": 77350, "donAcc_type": "standard", "distance": 3.577, "atom1_id": "///W/105/O", "atom2_id": "///W/109/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7356, "atom1_serNum": 77325, "atom2_serNum": 77361, "donAcc_type": "standard", "distance": 2.955, "atom1_id": "///W/106/O", "atom2_id": "///W/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7357, "atom1_serNum": 77325, "atom2_serNum": 77366, "donAcc_type": "acceptable", "distance": 2.593, "atom1_id": "///W/106/O", "atom2_id": "///W/110/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7358, "atom1_serNum": 77333, "atom2_serNum": 77361, "donAcc_type": "standard", "distance": 2.978, "atom1_id": "///W/107/O", "atom2_id": "///W/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7359, "atom1_serNum": 77349, "atom2_serNum": 77360, "donAcc_type": "acceptable", "distance": 3.826, "atom1_id": "///W/108/OH", "atom2_id": "///W/109/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7360, "atom1_serNum": 77364, "atom2_serNum": 77377, "donAcc_type": "standard", "distance": 2.580, "atom1_id": "///W/110/O", "atom2_id": "///W/112/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7361, "atom1_serNum": 77420, "atom2_serNum": 77584, "donAcc_type": "standard", "distance": 3.478, "atom1_id": "///W/118/N", "atom2_id": "///W/142/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7362, "atom1_serNum": 77423, "atom2_serNum": 77600, "donAcc_type": "standard", "distance": 2.561, "atom1_id": "///W/118/O", "atom2_id": "///W/144/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7363, "atom1_serNum": 77433, "atom2_serNum": 77603, "donAcc_type": "questionable", "distance": 3.262, "atom1_id": "///W/119/OD1", "atom2_id": "///W/144/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7364, "atom1_serNum": 77433, "atom2_serNum": 77614, "donAcc_type": "standard", "distance": 3.346, "atom1_id": "///W/119/OD1", "atom2_id": "///W/146/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7365, "atom1_serNum": 77433, "atom2_serNum": 81466, "donAcc_type": "questionable", "distance": 3.084, "atom1_id": "///W/119/OD1", "atom2_id": "///W/502/O6", "atom_pair": "O:O", "residue_pair": "aa:ligand" }, { "index": 7366, "atom1_serNum": 77434, "atom2_serNum": 81463, "donAcc_type": "standard", "distance": 3.314, "atom1_id": "///W/119/ND2", "atom2_id": "///W/502/N7", "atom_pair": "N:N", "residue_pair": "aa:ligand" }, { "index": 7367, "atom1_serNum": 77443, "atom2_serNum": 81455, "donAcc_type": "standard", "distance": 3.125, "atom1_id": "///W/120/NZ", "atom2_id": "///W/502/O4'", "atom_pair": "N:O", "residue_pair": "aa:ligand" }, { "index": 7368, "atom1_serNum": 77444, "atom2_serNum": 77603, "donAcc_type": "standard", "distance": 3.905, "atom1_id": "///W/121/N", "atom2_id": "///W/144/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7369, "atom1_serNum": 77455, "atom2_serNum": 77631, "donAcc_type": "acceptable", "distance": 3.159, "atom1_id": "///W/122/O", "atom2_id": "///W/148/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7370, "atom1_serNum": 77460, "atom2_serNum": 77481, "donAcc_type": "standard", "distance": 2.906, "atom1_id": "///W/123/O", "atom2_id": "///W/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7371, "atom1_serNum": 77460, "atom2_serNum": 77486, "donAcc_type": "standard", "distance": 3.327, "atom1_id": "///W/123/O", "atom2_id": "///W/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7372, "atom1_serNum": 77463, "atom2_serNum": 77472, "donAcc_type": "standard", "distance": 2.954, "atom1_id": "///W/123/OD1", "atom2_id": "///W/125/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7373, "atom1_serNum": 77463, "atom2_serNum": 77479, "donAcc_type": "questionable", "distance": 2.892, "atom1_id": "///W/123/OD1", "atom2_id": "///W/125/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7374, "atom1_serNum": 77463, "atom2_serNum": 77481, "donAcc_type": "standard", "distance": 2.812, "atom1_id": "///W/123/OD1", "atom2_id": "///W/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7375, "atom1_serNum": 77468, "atom2_serNum": 77486, "donAcc_type": "standard", "distance": 3.063, "atom1_id": "///W/124/O", "atom2_id": "///W/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7376, "atom1_serNum": 77472, "atom2_serNum": 77479, "donAcc_type": "standard", "distance": 2.682, "atom1_id": "///W/125/N", "atom2_id": "///W/125/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7377, "atom1_serNum": 77475, "atom2_serNum": 77491, "donAcc_type": "standard", "distance": 3.837, "atom1_id": "///W/125/O", "atom2_id": "///W/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7378, "atom1_serNum": 77520, "atom2_serNum": 77527, "donAcc_type": "standard", "distance": 2.634, "atom1_id": "///W/132/O", "atom2_id": "///W/134/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7379, "atom1_serNum": 77553, "atom2_serNum": 80843, "donAcc_type": "standard", "distance": 2.253, "atom1_id": "///W/138/O", "atom2_id": "///Y/129/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7380, "atom1_serNum": 77564, "atom2_serNum": 80843, "donAcc_type": "standard", "distance": 3.574, "atom1_id": "///W/139/O", "atom2_id": "///Y/129/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7381, "atom1_serNum": 77596, "atom2_serNum": 77650, "donAcc_type": "questionable", "distance": 3.345, "atom1_id": "///W/143/O", "atom2_id": "///W/151/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7382, "atom1_serNum": 77608, "atom2_serNum": 77642, "donAcc_type": "standard", "distance": 3.464, "atom1_id": "///W/145/N", "atom2_id": "///W/150/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7383, "atom1_serNum": 77613, "atom2_serNum": 77639, "donAcc_type": "acceptable", "distance": 3.203, "atom1_id": "///W/145/OG", "atom2_id": "///W/150/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7384, "atom1_serNum": 77614, "atom2_serNum": 81466, "donAcc_type": "standard", "distance": 2.448, "atom1_id": "///W/146/N", "atom2_id": "///W/502/O6", "atom_pair": "N:O", "residue_pair": "aa:ligand" }, { "index": 7385, "atom1_serNum": 77628, "atom2_serNum": 77639, "donAcc_type": "standard", "distance": 3.111, "atom1_id": "///W/148/O", "atom2_id": "///W/150/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7386, "atom1_serNum": 77650, "atom2_serNum": 77671, "donAcc_type": "standard", "distance": 3.565, "atom1_id": "///W/151/O", "atom2_id": "///W/155/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7387, "atom1_serNum": 77654, "atom2_serNum": 77679, "donAcc_type": "standard", "distance": 2.941, "atom1_id": "///W/152/O", "atom2_id": "///W/156/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7388, "atom1_serNum": 77662, "atom2_serNum": 77687, "donAcc_type": "standard", "distance": 3.205, "atom1_id": "///W/153/O", "atom2_id": "///W/157/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7389, "atom1_serNum": 77666, "atom2_serNum": 77695, "donAcc_type": "standard", "distance": 2.920, "atom1_id": "///W/154/O", "atom2_id": "///W/158/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7390, "atom1_serNum": 77674, "atom2_serNum": 77700, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///W/155/O", "atom2_id": "///W/159/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7391, "atom1_serNum": 77682, "atom2_serNum": 77700, "donAcc_type": "standard", "distance": 2.727, "atom1_id": "///W/156/O", "atom2_id": "///W/159/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7392, "atom1_serNum": 77682, "atom2_serNum": 77706, "donAcc_type": "standard", "distance": 2.593, "atom1_id": "///W/156/O", "atom2_id": "///W/160/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7393, "atom1_serNum": 77690, "atom2_serNum": 77711, "donAcc_type": "standard", "distance": 2.737, "atom1_id": "///W/157/O", "atom2_id": "///W/161/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7394, "atom1_serNum": 77693, "atom2_serNum": 79896, "donAcc_type": "standard", "distance": 3.075, "atom1_id": "///W/157/OD1", "atom2_id": "///Z/29/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7395, "atom1_serNum": 77694, "atom2_serNum": 79896, "donAcc_type": "standard", "distance": 3.061, "atom1_id": "///W/157/OD2", "atom2_id": "///Z/29/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7396, "atom1_serNum": 77703, "atom2_serNum": 77730, "donAcc_type": "standard", "distance": 3.071, "atom1_id": "///W/159/O", "atom2_id": "///W/163/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7397, "atom1_serNum": 77762, "atom2_serNum": 78357, "donAcc_type": "standard", "distance": 3.477, "atom1_id": "///W/177/O", "atom2_id": "///W/259/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7398, "atom1_serNum": 77764, "atom2_serNum": 78122, "donAcc_type": "standard", "distance": 3.038, "atom1_id": "///W/178/N", "atom2_id": "///W/226/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7399, "atom1_serNum": 77767, "atom2_serNum": 78122, "donAcc_type": "questionable", "distance": 3.021, "atom1_id": "///W/178/O", "atom2_id": "///W/226/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7400, "atom1_serNum": 77767, "atom2_serNum": 78131, "donAcc_type": "standard", "distance": 3.468, "atom1_id": "///W/178/O", "atom2_id": "///W/228/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7401, "atom1_serNum": 77775, "atom2_serNum": 78369, "donAcc_type": "standard", "distance": 2.802, "atom1_id": "///W/179/N", "atom2_id": "///W/260/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7402, "atom1_serNum": 77778, "atom2_serNum": 78380, "donAcc_type": "standard", "distance": 2.890, "atom1_id": "///W/179/O", "atom2_id": "///W/262/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7403, "atom1_serNum": 77781, "atom2_serNum": 78134, "donAcc_type": "standard", "distance": 3.219, "atom1_id": "///W/180/N", "atom2_id": "///W/228/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7404, "atom1_serNum": 77784, "atom2_serNum": 78151, "donAcc_type": "acceptable", "distance": 3.424, "atom1_id": "///W/180/O", "atom2_id": "///W/230/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7405, "atom1_serNum": 77789, "atom2_serNum": 78383, "donAcc_type": "standard", "distance": 3.278, "atom1_id": "///W/181/N", "atom2_id": "///W/262/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7406, "atom1_serNum": 77792, "atom2_serNum": 78391, "donAcc_type": "standard", "distance": 3.604, "atom1_id": "///W/181/O", "atom2_id": "///W/264/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7407, "atom1_serNum": 77800, "atom2_serNum": 78162, "donAcc_type": "standard", "distance": 2.949, "atom1_id": "///W/182/O", "atom2_id": "///W/233/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7408, "atom1_serNum": 77819, "atom2_serNum": 81415, "donAcc_type": "acceptable", "distance": 3.000, "atom1_id": "///W/185/N", "atom2_id": "///W/501/O2B", "atom_pair": "N:O", "residue_pair": "aa:ligand" }, { "index": 7409, "atom1_serNum": 77826, "atom2_serNum": 77957, "donAcc_type": "standard", "distance": 2.960, "atom1_id": "///W/185/ND2", "atom2_id": "///W/205/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7410, "atom1_serNum": 77827, "atom2_serNum": 81414, "donAcc_type": "acceptable", "distance": 2.403, "atom1_id": "///W/186/N", "atom2_id": "///W/501/O1B", "atom_pair": "N:O", "residue_pair": "aa:ligand" }, { "index": 7411, "atom1_serNum": 77830, "atom2_serNum": 78586, "donAcc_type": "standard", "distance": 3.428, "atom1_id": "///W/186/O", "atom2_id": "///W/294/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7412, "atom1_serNum": 77834, "atom2_serNum": 81414, "donAcc_type": "acceptable", "distance": 2.876, "atom1_id": "///W/187/N", "atom2_id": "///W/501/O1B", "atom_pair": "N:O", "residue_pair": "aa:ligand" }, { "index": 7413, "atom1_serNum": 77834, "atom2_serNum": 81416, "donAcc_type": "standard", "distance": 2.719, "atom1_id": "///W/187/N", "atom2_id": "///W/501/O3A", "atom_pair": "N:O", "residue_pair": "aa:ligand" }, { "index": 7414, "atom1_serNum": 77837, "atom2_serNum": 77855, "donAcc_type": "standard", "distance": 2.745, "atom1_id": "///W/187/O", "atom2_id": "///W/191/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7415, "atom1_serNum": 77841, "atom2_serNum": 77863, "donAcc_type": "standard", "distance": 3.365, "atom1_id": "///W/188/O", "atom2_id": "///W/192/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7416, "atom1_serNum": 77843, "atom2_serNum": 81418, "donAcc_type": "acceptable", "distance": 3.253, "atom1_id": "///W/189/N", "atom2_id": "///W/501/O1A", "atom_pair": "N:O", "residue_pair": "aa:ligand" }, { "index": 7417, "atom1_serNum": 77846, "atom2_serNum": 77870, "donAcc_type": "standard", "distance": 3.282, "atom1_id": "///W/189/O", "atom2_id": "///W/193/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7418, "atom1_serNum": 77848, "atom2_serNum": 77936, "donAcc_type": "acceptable", "distance": 3.712, "atom1_id": "///W/189/OG", "atom2_id": "///W/202/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7419, "atom1_serNum": 77848, "atom2_serNum": 77990, "donAcc_type": "acceptable", "distance": 3.022, "atom1_id": "///W/189/OG", "atom2_id": "///W/210/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7420, "atom1_serNum": 77848, "atom2_serNum": 81409, "donAcc_type": "acceptable", "distance": 2.403, "atom1_id": "///W/189/OG", "atom2_id": "///W/501/O1G", "atom_pair": "O:O", "residue_pair": "aa:ligand" }, { "index": 7421, "atom1_serNum": 77849, "atom2_serNum": 81418, "donAcc_type": "acceptable", "distance": 2.761, "atom1_id": "///W/190/N", "atom2_id": "///W/501/O1A", "atom_pair": "N:O", "residue_pair": "aa:ligand" }, { "index": 7422, "atom1_serNum": 77852, "atom2_serNum": 77875, "donAcc_type": "standard", "distance": 3.243, "atom1_id": "///W/190/O", "atom2_id": "///W/194/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7423, "atom1_serNum": 77858, "atom2_serNum": 77880, "donAcc_type": "standard", "distance": 3.111, "atom1_id": "///W/191/O", "atom2_id": "///W/195/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7424, "atom1_serNum": 77866, "atom2_serNum": 77880, "donAcc_type": "standard", "distance": 2.557, "atom1_id": "///W/192/O", "atom2_id": "///W/195/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7425, "atom1_serNum": 77866, "atom2_serNum": 77885, "donAcc_type": "standard", "distance": 3.213, "atom1_id": "///W/192/O", "atom2_id": "///W/196/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7426, "atom1_serNum": 77873, "atom2_serNum": 77893, "donAcc_type": "standard", "distance": 2.821, "atom1_id": "///W/193/O", "atom2_id": "///W/197/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7427, "atom1_serNum": 77873, "atom2_serNum": 77897, "donAcc_type": "standard", "distance": 2.852, "atom1_id": "///W/193/O", "atom2_id": "///W/198/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7428, "atom1_serNum": 77888, "atom2_serNum": 77905, "donAcc_type": "questionable", "distance": 2.823, "atom1_id": "///W/196/O", "atom2_id": "///W/198/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7429, "atom1_serNum": 77900, "atom2_serNum": 77915, "donAcc_type": "standard", "distance": 3.053, "atom1_id": "///W/198/O", "atom2_id": "///W/200/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7430, "atom1_serNum": 77914, "atom2_serNum": 77926, "donAcc_type": "standard", "distance": 2.840, "atom1_id": "///W/199/OE2", "atom2_id": "///W/201/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7431, "atom1_serNum": 77914, "atom2_serNum": 77929, "donAcc_type": "questionable", "distance": 2.730, "atom1_id": "///W/199/OE2", "atom2_id": "///W/201/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7432, "atom1_serNum": 77918, "atom2_serNum": 77924, "donAcc_type": "standard", "distance": 2.579, "atom1_id": "///W/200/O", "atom2_id": "///W/200/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7433, "atom1_serNum": 77925, "atom2_serNum": 78026, "donAcc_type": "standard", "distance": 3.863, "atom1_id": "///W/200/NH2", "atom2_id": "///W/215/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7434, "atom1_serNum": 77953, "atom2_serNum": 77962, "donAcc_type": "acceptable", "distance": 3.306, "atom1_id": "///W/204/OG", "atom2_id": "///W/206/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7435, "atom1_serNum": 77965, "atom2_serNum": 77983, "donAcc_type": "acceptable", "distance": 2.754, "atom1_id": "///W/206/O", "atom2_id": "///W/209/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7436, "atom1_serNum": 77990, "atom2_serNum": 81409, "donAcc_type": "acceptable", "distance": 2.330, "atom1_id": "///W/210/OG1", "atom2_id": "///W/501/O1G", "atom_pair": "O:O", "residue_pair": "aa:ligand" }, { "index": 7437, "atom1_serNum": 77990, "atom2_serNum": 81411, "donAcc_type": "acceptable", "distance": 2.817, "atom1_id": "///W/210/OG1", "atom2_id": "///W/501/O3G", "atom_pair": "O:O", "residue_pair": "aa:ligand" }, { "index": 7438, "atom1_serNum": 78003, "atom2_serNum": 78009, "donAcc_type": "standard", "distance": 2.743, "atom1_id": "///W/212/N", "atom2_id": "///W/212/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7439, "atom1_serNum": 78016, "atom2_serNum": 78141, "donAcc_type": "standard", "distance": 3.758, "atom1_id": "///W/214/N", "atom2_id": "///W/229/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7440, "atom1_serNum": 78019, "atom2_serNum": 78138, "donAcc_type": "standard", "distance": 3.485, "atom1_id": "///W/214/O", "atom2_id": "///W/229/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7441, "atom1_serNum": 78031, "atom2_serNum": 78129, "donAcc_type": "standard", "distance": 3.074, "atom1_id": "///W/216/N", "atom2_id": "///W/227/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7442, "atom1_serNum": 78034, "atom2_serNum": 78126, "donAcc_type": "standard", "distance": 2.835, "atom1_id": "///W/216/O", "atom2_id": "///W/227/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7443, "atom1_serNum": 78036, "atom2_serNum": 78129, "donAcc_type": "acceptable", "distance": 3.071, "atom1_id": "///W/216/OG1", "atom2_id": "///W/227/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7444, "atom1_serNum": 78043, "atom2_serNum": 78111, "donAcc_type": "standard", "distance": 2.903, "atom1_id": "///W/218/N", "atom2_id": "///W/225/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7445, "atom1_serNum": 78046, "atom2_serNum": 78108, "donAcc_type": "standard", "distance": 2.484, "atom1_id": "///W/218/O", "atom2_id": "///W/225/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7446, "atom1_serNum": 78061, "atom2_serNum": 78093, "donAcc_type": "standard", "distance": 2.306, "atom1_id": "///W/220/N", "atom2_id": "///W/223/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7447, "atom1_serNum": 78064, "atom2_serNum": 78090, "donAcc_type": "standard", "distance": 2.798, "atom1_id": "///W/220/O", "atom2_id": "///W/223/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7448, "atom1_serNum": 78145, "atom2_serNum": 78153, "donAcc_type": "standard", "distance": 2.900, "atom1_id": "///W/229/OD2", "atom2_id": "///W/231/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7449, "atom1_serNum": 78145, "atom2_serNum": 81409, "donAcc_type": "acceptable", "distance": 3.460, "atom1_id": "///W/229/OD2", "atom2_id": "///W/501/O1G", "atom_pair": "O:O", "residue_pair": "aa:ligand" }, { "index": 7450, "atom1_serNum": 78174, "atom2_serNum": 78195, "donAcc_type": "standard", "distance": 3.322, "atom1_id": "///W/234/NE", "atom2_id": "///W/238/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7451, "atom1_serNum": 78177, "atom2_serNum": 78195, "donAcc_type": "standard", "distance": 2.408, "atom1_id": "///W/234/NH2", "atom2_id": "///W/238/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7452, "atom1_serNum": 78181, "atom2_serNum": 78192, "donAcc_type": "standard", "distance": 2.916, "atom1_id": "///W/235/O", "atom2_id": "///W/238/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7453, "atom1_serNum": 78219, "atom2_serNum": 78232, "donAcc_type": "standard", "distance": 2.701, "atom1_id": "///W/241/O", "atom2_id": "///W/243/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7454, "atom1_serNum": 78225, "atom2_serNum": 78246, "donAcc_type": "standard", "distance": 2.966, "atom1_id": "///W/242/N", "atom2_id": "///W/244/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7455, "atom1_serNum": 78235, "atom2_serNum": 78237, "donAcc_type": "acceptable", "distance": 2.847, "atom1_id": "///W/243/O", "atom2_id": "///W/243/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7456, "atom1_serNum": 78235, "atom2_serNum": 78253, "donAcc_type": "standard", "distance": 3.080, "atom1_id": "///W/243/O", "atom2_id": "///W/246/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7457, "atom1_serNum": 78242, "atom2_serNum": 78265, "donAcc_type": "standard", "distance": 3.195, "atom1_id": "///W/244/O", "atom2_id": "///W/247/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7458, "atom1_serNum": 78242, "atom2_serNum": 78271, "donAcc_type": "standard", "distance": 3.166, "atom1_id": "///W/244/O", "atom2_id": "///W/248/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7459, "atom1_serNum": 78251, "atom2_serNum": 78271, "donAcc_type": "standard", "distance": 2.567, "atom1_id": "///W/245/O", "atom2_id": "///W/248/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7460, "atom1_serNum": 78251, "atom2_serNum": 78278, "donAcc_type": "standard", "distance": 2.754, "atom1_id": "///W/245/O", "atom2_id": "///W/249/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7461, "atom1_serNum": 78256, "atom2_serNum": 78295, "donAcc_type": "standard", "distance": 3.227, "atom1_id": "///W/246/O", "atom2_id": "///W/250/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7462, "atom1_serNum": 78268, "atom2_serNum": 78297, "donAcc_type": "standard", "distance": 3.547, "atom1_id": "///W/247/O", "atom2_id": "///W/251/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7463, "atom1_serNum": 78274, "atom2_serNum": 78297, "donAcc_type": "standard", "distance": 2.968, "atom1_id": "///W/248/O", "atom2_id": "///W/251/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7464, "atom1_serNum": 78274, "atom2_serNum": 78302, "donAcc_type": "standard", "distance": 3.311, "atom1_id": "///W/248/O", "atom2_id": "///W/252/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7465, "atom1_serNum": 78281, "atom2_serNum": 78310, "donAcc_type": "standard", "distance": 2.869, "atom1_id": "///W/249/O", "atom2_id": "///W/253/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7466, "atom1_serNum": 78289, "atom2_serNum": 78319, "donAcc_type": "standard", "distance": 3.021, "atom1_id": "///W/250/O", "atom2_id": "///W/254/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7467, "atom1_serNum": 78300, "atom2_serNum": 78324, "donAcc_type": "standard", "distance": 3.111, "atom1_id": "///W/251/O", "atom2_id": "///W/255/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7468, "atom1_serNum": 78305, "atom2_serNum": 78332, "donAcc_type": "standard", "distance": 3.292, "atom1_id": "///W/252/O", "atom2_id": "///W/256/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7469, "atom1_serNum": 78313, "atom2_serNum": 78340, "donAcc_type": "standard", "distance": 2.940, "atom1_id": "///W/253/O", "atom2_id": "///W/257/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7470, "atom1_serNum": 78322, "atom2_serNum": 78351, "donAcc_type": "standard", "distance": 3.157, "atom1_id": "///W/254/O", "atom2_id": "///W/258/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7471, "atom1_serNum": 78327, "atom2_serNum": 78354, "donAcc_type": "questionable", "distance": 2.704, "atom1_id": "///W/255/O", "atom2_id": "///W/258/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7472, "atom1_serNum": 78360, "atom2_serNum": 78537, "donAcc_type": "standard", "distance": 3.232, "atom1_id": "///W/259/O", "atom2_id": "///W/288/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7473, "atom1_serNum": 78373, "atom2_serNum": 78540, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///W/261/N", "atom2_id": "///W/288/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7474, "atom1_serNum": 78376, "atom2_serNum": 78549, "donAcc_type": "standard", "distance": 2.823, "atom1_id": "///W/261/O", "atom2_id": "///W/290/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7475, "atom1_serNum": 78384, "atom2_serNum": 78552, "donAcc_type": "standard", "distance": 2.648, "atom1_id": "///W/263/N", "atom2_id": "///W/290/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7476, "atom1_serNum": 78387, "atom2_serNum": 78564, "donAcc_type": "standard", "distance": 2.538, "atom1_id": "///W/263/O", "atom2_id": "///W/292/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7477, "atom1_serNum": 78398, "atom2_serNum": 78567, "donAcc_type": "standard", "distance": 2.858, "atom1_id": "///W/265/N", "atom2_id": "///W/292/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7478, "atom1_serNum": 78401, "atom2_serNum": 78579, "donAcc_type": "standard", "distance": 2.865, "atom1_id": "///W/265/O", "atom2_id": "///W/294/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7479, "atom1_serNum": 78412, "atom2_serNum": 78414, "donAcc_type": "standard", "distance": 2.677, "atom1_id": "///W/266/OD1", "atom2_id": "///W/267/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7480, "atom1_serNum": 78414, "atom2_serNum": 78582, "donAcc_type": "standard", "distance": 3.132, "atom1_id": "///W/267/N", "atom2_id": "///W/294/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7481, "atom1_serNum": 78429, "atom2_serNum": 78448, "donAcc_type": "standard", "distance": 3.054, "atom1_id": "///W/272/O", "atom2_id": "///W/275/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7482, "atom1_serNum": 78437, "atom2_serNum": 78465, "donAcc_type": "standard", "distance": 2.875, "atom1_id": "///W/273/O", "atom2_id": "///W/277/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7483, "atom1_serNum": 78446, "atom2_serNum": 78470, "donAcc_type": "standard", "distance": 2.475, "atom1_id": "///W/274/O", "atom2_id": "///W/278/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7484, "atom1_serNum": 78448, "atom2_serNum": 78454, "donAcc_type": "standard", "distance": 2.553, "atom1_id": "///W/275/N", "atom2_id": "///W/275/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7485, "atom1_serNum": 78451, "atom2_serNum": 78478, "donAcc_type": "standard", "distance": 3.022, "atom1_id": "///W/275/O", "atom2_id": "///W/279/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7486, "atom1_serNum": 78459, "atom2_serNum": 78483, "donAcc_type": "standard", "distance": 2.991, "atom1_id": "///W/276/O", "atom2_id": "///W/280/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7487, "atom1_serNum": 78468, "atom2_serNum": 78483, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///W/277/O", "atom2_id": "///W/280/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7488, "atom1_serNum": 78481, "atom2_serNum": 78504, "donAcc_type": "standard", "distance": 3.200, "atom1_id": "///W/279/O", "atom2_id": "///W/283/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7489, "atom1_serNum": 78486, "atom2_serNum": 78514, "donAcc_type": "standard", "distance": 3.421, "atom1_id": "///W/280/O", "atom2_id": "///W/284/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7490, "atom1_serNum": 78490, "atom2_serNum": 78522, "donAcc_type": "questionable", "distance": 2.813, "atom1_id": "///W/281/O", "atom2_id": "///W/284/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7491, "atom1_serNum": 78490, "atom2_serNum": 78523, "donAcc_type": "standard", "distance": 3.164, "atom1_id": "///W/281/O", "atom2_id": "///W/285/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7492, "atom1_serNum": 78502, "atom2_serNum": 78523, "donAcc_type": "standard", "distance": 3.069, "atom1_id": "///W/282/O", "atom2_id": "///W/285/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7493, "atom1_serNum": 78502, "atom2_serNum": 78532, "donAcc_type": "standard", "distance": 3.842, "atom1_id": "///W/282/O", "atom2_id": "///W/287/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7494, "atom1_serNum": 78507, "atom2_serNum": 78528, "donAcc_type": "standard", "distance": 3.214, "atom1_id": "///W/283/O", "atom2_id": "///W/286/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7495, "atom1_serNum": 78510, "atom2_serNum": 78832, "donAcc_type": "acceptable", "distance": 2.557, "atom1_id": "///W/283/ND1", "atom2_id": "///W/322/OH", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7496, "atom1_serNum": 78531, "atom2_serNum": 79037, "donAcc_type": "standard", "distance": 2.694, "atom1_id": "///W/286/O", "atom2_id": "///W/350/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7497, "atom1_serNum": 78556, "atom2_serNum": 78841, "donAcc_type": "standard", "distance": 3.377, "atom1_id": "///W/291/N", "atom2_id": "///W/324/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7498, "atom1_serNum": 78559, "atom2_serNum": 78852, "donAcc_type": "standard", "distance": 3.127, "atom1_id": "///W/291/O", "atom2_id": "///W/326/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7499, "atom1_serNum": 78572, "atom2_serNum": 78855, "donAcc_type": "standard", "distance": 3.336, "atom1_id": "///W/293/N", "atom2_id": "///W/326/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7500, "atom1_serNum": 78575, "atom2_serNum": 78871, "donAcc_type": "standard", "distance": 3.336, "atom1_id": "///W/293/O", "atom2_id": "///W/328/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7501, "atom1_serNum": 78575, "atom2_serNum": 78874, "donAcc_type": "questionable", "distance": 2.818, "atom1_id": "///W/293/O", "atom2_id": "///W/328/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7502, "atom1_serNum": 78585, "atom2_serNum": 78885, "donAcc_type": "standard", "distance": 2.812, "atom1_id": "///W/294/OD1", "atom2_id": "///W/330/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7503, "atom1_serNum": 78585, "atom2_serNum": 81434, "donAcc_type": "questionable", "distance": 3.151, "atom1_id": "///W/294/OD1", "atom2_id": "///W/501/O6", "atom_pair": "O:O", "residue_pair": "aa:ligand" }, { "index": 7504, "atom1_serNum": 78586, "atom2_serNum": 81431, "donAcc_type": "standard", "distance": 3.306, "atom1_id": "///W/294/ND2", "atom2_id": "///W/501/N7", "atom_pair": "N:N", "residue_pair": "aa:ligand" }, { "index": 7505, "atom1_serNum": 78587, "atom2_serNum": 78874, "donAcc_type": "standard", "distance": 3.801, "atom1_id": "///W/295/N", "atom2_id": "///W/328/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7506, "atom1_serNum": 78587, "atom2_serNum": 81434, "donAcc_type": "standard", "distance": 3.558, "atom1_id": "///W/295/N", "atom2_id": "///W/501/O6", "atom_pair": "N:O", "residue_pair": "aa:ligand" }, { "index": 7507, "atom1_serNum": 78590, "atom2_serNum": 78618, "donAcc_type": "standard", "distance": 2.790, "atom1_id": "///W/295/O", "atom2_id": "///W/298/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7508, "atom1_serNum": 78595, "atom2_serNum": 81423, "donAcc_type": "standard", "distance": 2.602, "atom1_id": "///W/295/NZ", "atom2_id": "///W/501/O4'", "atom_pair": "N:O", "residue_pair": "aa:ligand" }, { "index": 7509, "atom1_serNum": 78596, "atom2_serNum": 78884, "donAcc_type": "acceptable", "distance": 2.792, "atom1_id": "///W/296/N", "atom2_id": "///W/329/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7510, "atom1_serNum": 78610, "atom2_serNum": 78616, "donAcc_type": "standard", "distance": 2.650, "atom1_id": "///W/297/N", "atom2_id": "///W/297/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7511, "atom1_serNum": 78610, "atom2_serNum": 78884, "donAcc_type": "acceptable", "distance": 3.137, "atom1_id": "///W/297/N", "atom2_id": "///W/329/OG", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7512, "atom1_serNum": 78616, "atom2_serNum": 81435, "donAcc_type": "standard", "distance": 3.349, "atom1_id": "///W/297/OD1", "atom2_id": "///W/501/N1", "atom_pair": "O:N", "residue_pair": "aa:ligand" }, { "index": 7513, "atom1_serNum": 78617, "atom2_serNum": 81437, "donAcc_type": "standard", "distance": 3.367, "atom1_id": "///W/297/OD2", "atom2_id": "///W/501/N2", "atom_pair": "O:N", "residue_pair": "aa:ligand" }, { "index": 7514, "atom1_serNum": 78637, "atom2_serNum": 78654, "donAcc_type": "questionable", "distance": 3.037, "atom1_id": "///W/300/OD2", "atom2_id": "///W/302/OD2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7515, "atom1_serNum": 78647, "atom2_serNum": 78671, "donAcc_type": "acceptable", "distance": 2.932, "atom1_id": "///W/302/N", "atom2_id": "///W/305/OG1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7516, "atom1_serNum": 78653, "atom2_serNum": 78671, "donAcc_type": "acceptable", "distance": 2.512, "atom1_id": "///W/302/OD1", "atom2_id": "///W/305/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7517, "atom1_serNum": 78663, "atom2_serNum": 78697, "donAcc_type": "questionable", "distance": 2.795, "atom1_id": "///W/304/O", "atom2_id": "///W/308/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7518, "atom1_serNum": 78669, "atom2_serNum": 78690, "donAcc_type": "standard", "distance": 3.119, "atom1_id": "///W/305/O", "atom2_id": "///W/308/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7519, "atom1_serNum": 78676, "atom2_serNum": 78710, "donAcc_type": "standard", "distance": 2.755, "atom1_id": "///W/306/O", "atom2_id": "///W/310/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7520, "atom1_serNum": 78684, "atom2_serNum": 78719, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///W/307/O", "atom2_id": "///W/311/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7521, "atom1_serNum": 78693, "atom2_serNum": 78728, "donAcc_type": "standard", "distance": 3.078, "atom1_id": "///W/308/O", "atom2_id": "///W/312/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7522, "atom1_serNum": 78693, "atom2_serNum": 78735, "donAcc_type": "standard", "distance": 3.139, "atom1_id": "///W/308/O", "atom2_id": "///W/312/ND2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7523, "atom1_serNum": 78702, "atom2_serNum": 78736, "donAcc_type": "standard", "distance": 2.818, "atom1_id": "///W/309/O", "atom2_id": "///W/313/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7524, "atom1_serNum": 78713, "atom2_serNum": 78744, "donAcc_type": "standard", "distance": 3.236, "atom1_id": "///W/310/O", "atom2_id": "///W/314/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7525, "atom1_serNum": 78722, "atom2_serNum": 78755, "donAcc_type": "standard", "distance": 2.506, "atom1_id": "///W/311/O", "atom2_id": "///W/315/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7526, "atom1_serNum": 78731, "atom2_serNum": 78764, "donAcc_type": "standard", "distance": 2.723, "atom1_id": "///W/312/O", "atom2_id": "///W/316/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7527, "atom1_serNum": 78739, "atom2_serNum": 78774, "donAcc_type": "standard", "distance": 2.716, "atom1_id": "///W/313/O", "atom2_id": "///W/317/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7528, "atom1_serNum": 78753, "atom2_serNum": 78808, "donAcc_type": "standard", "distance": 3.852, "atom1_id": "///W/314/NH1", "atom2_id": "///W/320/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7529, "atom1_serNum": 78753, "atom2_serNum": 78816, "donAcc_type": "standard", "distance": 3.111, "atom1_id": "///W/314/NH1", "atom2_id": "///W/321/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7530, "atom1_serNum": 78754, "atom2_serNum": 78816, "donAcc_type": "standard", "distance": 3.308, "atom1_id": "///W/314/NH2", "atom2_id": "///W/321/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7531, "atom1_serNum": 78754, "atom2_serNum": 78836, "donAcc_type": "standard", "distance": 2.691, "atom1_id": "///W/314/NH2", "atom2_id": "///W/323/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7532, "atom1_serNum": 78758, "atom2_serNum": 78793, "donAcc_type": "standard", "distance": 2.784, "atom1_id": "///W/315/O", "atom2_id": "///W/318/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7533, "atom1_serNum": 78785, "atom2_serNum": 78792, "donAcc_type": "standard", "distance": 2.644, "atom1_id": "///W/318/N", "atom2_id": "///W/318/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7534, "atom1_serNum": 78788, "atom2_serNum": 78819, "donAcc_type": "questionable", "distance": 2.782, "atom1_id": "///W/318/O", "atom2_id": "///W/321/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7535, "atom1_serNum": 78824, "atom2_serNum": 79597, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///W/322/O", "atom2_id": "///W/425/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7536, "atom1_serNum": 78879, "atom2_serNum": 78917, "donAcc_type": "standard", "distance": 3.661, "atom1_id": "///W/329/N", "atom2_id": "///W/334/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7537, "atom1_serNum": 78882, "atom2_serNum": 78905, "donAcc_type": "standard", "distance": 2.802, "atom1_id": "///W/329/O", "atom2_id": "///W/333/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7538, "atom1_serNum": 78882, "atom2_serNum": 78914, "donAcc_type": "standard", "distance": 3.305, "atom1_id": "///W/329/O", "atom2_id": "///W/334/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7539, "atom1_serNum": 78885, "atom2_serNum": 81434, "donAcc_type": "standard", "distance": 2.708, "atom1_id": "///W/330/N", "atom2_id": "///W/501/O6", "atom_pair": "N:O", "residue_pair": "aa:ligand" }, { "index": 7540, "atom1_serNum": 78890, "atom2_serNum": 81434, "donAcc_type": "standard", "distance": 2.862, "atom1_id": "///W/331/N", "atom2_id": "///W/501/O6", "atom_pair": "N:O", "residue_pair": "aa:ligand" }, { "index": 7541, "atom1_serNum": 78926, "atom2_serNum": 78946, "donAcc_type": "standard", "distance": 3.138, "atom1_id": "///W/335/O", "atom2_id": "///W/338/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7542, "atom1_serNum": 78936, "atom2_serNum": 78942, "donAcc_type": "acceptable", "distance": 2.958, "atom1_id": "///W/337/N", "atom2_id": "///W/337/ND1", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 7543, "atom1_serNum": 78949, "atom2_serNum": 78970, "donAcc_type": "standard", "distance": 3.302, "atom1_id": "///W/338/O", "atom2_id": "///W/342/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7544, "atom1_serNum": 78956, "atom2_serNum": 78975, "donAcc_type": "standard", "distance": 3.418, "atom1_id": "///W/339/O", "atom2_id": "///W/343/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7545, "atom1_serNum": 78961, "atom2_serNum": 78975, "donAcc_type": "standard", "distance": 2.711, "atom1_id": "///W/340/O", "atom2_id": "///W/343/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7546, "atom1_serNum": 78961, "atom2_serNum": 78983, "donAcc_type": "standard", "distance": 3.421, "atom1_id": "///W/340/O", "atom2_id": "///W/344/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7547, "atom1_serNum": 78966, "atom2_serNum": 78983, "donAcc_type": "standard", "distance": 2.725, "atom1_id": "///W/341/O", "atom2_id": "///W/344/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7548, "atom1_serNum": 78966, "atom2_serNum": 78991, "donAcc_type": "standard", "distance": 3.259, "atom1_id": "///W/341/O", "atom2_id": "///W/345/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7549, "atom1_serNum": 78973, "atom2_serNum": 79000, "donAcc_type": "standard", "distance": 3.525, "atom1_id": "///W/342/O", "atom2_id": "///W/346/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7550, "atom1_serNum": 78978, "atom2_serNum": 79005, "donAcc_type": "standard", "distance": 3.336, "atom1_id": "///W/343/O", "atom2_id": "///W/347/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7551, "atom1_serNum": 78986, "atom2_serNum": 79005, "donAcc_type": "standard", "distance": 2.908, "atom1_id": "///W/344/O", "atom2_id": "///W/347/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7552, "atom1_serNum": 78986, "atom2_serNum": 79010, "donAcc_type": "acceptable", "distance": 2.389, "atom1_id": "///W/344/O", "atom2_id": "///W/347/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7553, "atom1_serNum": 78999, "atom2_serNum": 79019, "donAcc_type": "standard", "distance": 2.877, "atom1_id": "///W/345/NZ", "atom2_id": "///W/348/OE2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7554, "atom1_serNum": 79003, "atom2_serNum": 79028, "donAcc_type": "standard", "distance": 3.061, "atom1_id": "///W/346/O", "atom2_id": "///W/350/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7555, "atom1_serNum": 79008, "atom2_serNum": 79038, "donAcc_type": "standard", "distance": 3.091, "atom1_id": "///W/347/O", "atom2_id": "///W/351/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7556, "atom1_serNum": 79008, "atom2_serNum": 79043, "donAcc_type": "acceptable", "distance": 3.146, "atom1_id": "///W/347/O", "atom2_id": "///W/351/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7557, "atom1_serNum": 79010, "atom2_serNum": 79018, "donAcc_type": "acceptable", "distance": 2.960, "atom1_id": "///W/347/OG", "atom2_id": "///W/348/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7558, "atom1_serNum": 79011, "atom2_serNum": 79018, "donAcc_type": "standard", "distance": 2.556, "atom1_id": "///W/348/N", "atom2_id": "///W/348/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7559, "atom1_serNum": 79014, "atom2_serNum": 79038, "donAcc_type": "standard", "distance": 2.762, "atom1_id": "///W/348/O", "atom2_id": "///W/351/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7560, "atom1_serNum": 79031, "atom2_serNum": 79034, "donAcc_type": "acceptable", "distance": 2.652, "atom1_id": "///W/350/O", "atom2_id": "///W/350/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7561, "atom1_serNum": 79031, "atom2_serNum": 79311, "donAcc_type": "questionable", "distance": 2.434, "atom1_id": "///W/350/O", "atom2_id": "///W/391/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7562, "atom1_serNum": 79034, "atom2_serNum": 79311, "donAcc_type": "acceptable", "distance": 2.760, "atom1_id": "///W/350/ND1", "atom2_id": "///W/391/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7563, "atom1_serNum": 79041, "atom2_serNum": 79043, "donAcc_type": "acceptable", "distance": 2.775, "atom1_id": "///W/351/O", "atom2_id": "///W/351/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7564, "atom1_serNum": 79044, "atom2_serNum": 79304, "donAcc_type": "standard", "distance": 3.870, "atom1_id": "///W/352/N", "atom2_id": "///W/390/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7565, "atom1_serNum": 79047, "atom2_serNum": 79287, "donAcc_type": "standard", "distance": 2.788, "atom1_id": "///W/352/O", "atom2_id": "///W/387/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7566, "atom1_serNum": 79062, "atom2_serNum": 79282, "donAcc_type": "standard", "distance": 3.483, "atom1_id": "///W/353/NH2", "atom2_id": "///W/387/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7567, "atom1_serNum": 79063, "atom2_serNum": 79286, "donAcc_type": "standard", "distance": 2.751, "atom1_id": "///W/354/N", "atom2_id": "///W/387/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7568, "atom1_serNum": 79066, "atom2_serNum": 79079, "donAcc_type": "standard", "distance": 3.296, "atom1_id": "///W/354/O", "atom2_id": "///W/356/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7569, "atom1_serNum": 79073, "atom2_serNum": 79101, "donAcc_type": "standard", "distance": 3.085, "atom1_id": "///W/355/O", "atom2_id": "///W/359/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7570, "atom1_serNum": 79082, "atom2_serNum": 79106, "donAcc_type": "standard", "distance": 3.034, "atom1_id": "///W/356/O", "atom2_id": "///W/360/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7571, "atom1_serNum": 79089, "atom2_serNum": 79114, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///W/357/O", "atom2_id": "///W/361/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7572, "atom1_serNum": 79097, "atom2_serNum": 79122, "donAcc_type": "standard", "distance": 3.332, "atom1_id": "///W/358/O", "atom2_id": "///W/362/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7573, "atom1_serNum": 79104, "atom2_serNum": 79122, "donAcc_type": "standard", "distance": 3.159, "atom1_id": "///W/359/O", "atom2_id": "///W/362/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7574, "atom1_serNum": 79104, "atom2_serNum": 79129, "donAcc_type": "standard", "distance": 3.324, "atom1_id": "///W/359/O", "atom2_id": "///W/363/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7575, "atom1_serNum": 79112, "atom2_serNum": 79267, "donAcc_type": "standard", "distance": 2.694, "atom1_id": "///W/360/OD1", "atom2_id": "///W/385/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7576, "atom1_serNum": 79113, "atom2_serNum": 79270, "donAcc_type": "standard", "distance": 2.628, "atom1_id": "///W/360/ND2", "atom2_id": "///W/385/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7577, "atom1_serNum": 79125, "atom2_serNum": 79150, "donAcc_type": "standard", "distance": 3.275, "atom1_id": "///W/362/O", "atom2_id": "///W/366/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7578, "atom1_serNum": 79132, "atom2_serNum": 79155, "donAcc_type": "standard", "distance": 3.389, "atom1_id": "///W/363/O", "atom2_id": "///W/367/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7579, "atom1_serNum": 79140, "atom2_serNum": 79155, "donAcc_type": "standard", "distance": 2.684, "atom1_id": "///W/364/O", "atom2_id": "///W/367/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7580, "atom1_serNum": 79140, "atom2_serNum": 79162, "donAcc_type": "standard", "distance": 2.572, "atom1_id": "///W/364/O", "atom2_id": "///W/368/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7581, "atom1_serNum": 79145, "atom2_serNum": 79167, "donAcc_type": "standard", "distance": 3.013, "atom1_id": "///W/365/O", "atom2_id": "///W/369/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7582, "atom1_serNum": 79153, "atom2_serNum": 79175, "donAcc_type": "standard", "distance": 3.135, "atom1_id": "///W/366/O", "atom2_id": "///W/370/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7583, "atom1_serNum": 79178, "atom2_serNum": 79187, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///W/370/O", "atom2_id": "///W/372/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7584, "atom1_serNum": 79178, "atom2_serNum": 79462, "donAcc_type": "acceptable", "distance": 2.717, "atom1_id": "///W/370/O", "atom2_id": "///W/409/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7585, "atom1_serNum": 79204, "atom2_serNum": 79214, "donAcc_type": "standard", "distance": 2.717, "atom1_id": "///W/378/O", "atom2_id": "///W/379/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7586, "atom1_serNum": 79204, "atom2_serNum": 79217, "donAcc_type": "standard", "distance": 2.883, "atom1_id": "///W/378/O", "atom2_id": "///W/379/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7587, "atom1_serNum": 79229, "atom2_serNum": 79376, "donAcc_type": "standard", "distance": 3.476, "atom1_id": "///W/381/O", "atom2_id": "///W/400/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7588, "atom1_serNum": 79243, "atom2_serNum": 79361, "donAcc_type": "standard", "distance": 3.284, "atom1_id": "///W/383/N", "atom2_id": "///W/398/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7589, "atom1_serNum": 79254, "atom2_serNum": 79682, "donAcc_type": "acceptable", "distance": 3.042, "atom1_id": "///W/383/OH", "atom2_id": "///W/435/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7590, "atom1_serNum": 79258, "atom2_serNum": 79358, "donAcc_type": "standard", "distance": 2.698, "atom1_id": "///W/384/O", "atom2_id": "///W/398/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7591, "atom1_serNum": 79272, "atom2_serNum": 79347, "donAcc_type": "standard", "distance": 3.206, "atom1_id": "///W/386/N", "atom2_id": "///W/396/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7592, "atom1_serNum": 79275, "atom2_serNum": 79344, "donAcc_type": "standard", "distance": 3.090, "atom1_id": "///W/386/O", "atom2_id": "///W/396/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7593, "atom1_serNum": 79287, "atom2_serNum": 79298, "donAcc_type": "standard", "distance": 3.770, "atom1_id": "///W/387/NE2", "atom2_id": "///W/389/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7594, "atom1_serNum": 79288, "atom2_serNum": 79330, "donAcc_type": "standard", "distance": 3.411, "atom1_id": "///W/388/N", "atom2_id": "///W/394/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7595, "atom1_serNum": 79291, "atom2_serNum": 79301, "donAcc_type": "standard", "distance": 3.448, "atom1_id": "///W/388/O", "atom2_id": "///W/390/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7596, "atom1_serNum": 79298, "atom2_serNum": 79327, "donAcc_type": "standard", "distance": 3.139, "atom1_id": "///W/389/O", "atom2_id": "///W/394/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7597, "atom1_serNum": 79316, "atom2_serNum": 79327, "donAcc_type": "standard", "distance": 2.663, "atom1_id": "///W/392/O", "atom2_id": "///W/394/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7598, "atom1_serNum": 79316, "atom2_serNum": 79332, "donAcc_type": "acceptable", "distance": 2.870, "atom1_id": "///W/392/O", "atom2_id": "///W/394/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7599, "atom1_serNum": 79323, "atom2_serNum": 79332, "donAcc_type": "acceptable", "distance": 2.959, "atom1_id": "///W/393/O", "atom2_id": "///W/394/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7600, "atom1_serNum": 79323, "atom2_serNum": 79623, "donAcc_type": "standard", "distance": 3.209, "atom1_id": "///W/393/O", "atom2_id": "///W/429/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7601, "atom1_serNum": 79333, "atom2_serNum": 79626, "donAcc_type": "standard", "distance": 3.289, "atom1_id": "///W/395/N", "atom2_id": "///W/429/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7602, "atom1_serNum": 79336, "atom2_serNum": 79640, "donAcc_type": "standard", "distance": 3.156, "atom1_id": "///W/395/O", "atom2_id": "///W/431/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7603, "atom1_serNum": 79351, "atom2_serNum": 79643, "donAcc_type": "standard", "distance": 2.780, "atom1_id": "///W/397/N", "atom2_id": "///W/431/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7604, "atom1_serNum": 79354, "atom2_serNum": 79656, "donAcc_type": "standard", "distance": 3.102, "atom1_id": "///W/397/O", "atom2_id": "///W/433/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7605, "atom1_serNum": 79369, "atom2_serNum": 79659, "donAcc_type": "standard", "distance": 3.374, "atom1_id": "///W/399/N", "atom2_id": "///W/433/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7606, "atom1_serNum": 79372, "atom2_serNum": 79672, "donAcc_type": "standard", "distance": 3.138, "atom1_id": "///W/399/O", "atom2_id": "///W/435/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7607, "atom1_serNum": 79427, "atom2_serNum": 79451, "donAcc_type": "standard", "distance": 2.694, "atom1_id": "///W/406/O", "atom2_id": "///W/409/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7608, "atom1_serNum": 79427, "atom2_serNum": 79463, "donAcc_type": "standard", "distance": 3.033, "atom1_id": "///W/406/O", "atom2_id": "///W/410/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7609, "atom1_serNum": 79430, "atom2_serNum": 79445, "donAcc_type": "acceptable", "distance": 2.948, "atom1_id": "///W/406/ND1", "atom2_id": "///W/408/N", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 7610, "atom1_serNum": 79437, "atom2_serNum": 79472, "donAcc_type": "standard", "distance": 2.854, "atom1_id": "///W/407/O", "atom2_id": "///W/411/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7611, "atom1_serNum": 79448, "atom2_serNum": 79483, "donAcc_type": "standard", "distance": 2.858, "atom1_id": "///W/408/O", "atom2_id": "///W/412/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7612, "atom1_serNum": 79454, "atom2_serNum": 79483, "donAcc_type": "standard", "distance": 2.886, "atom1_id": "///W/409/O", "atom2_id": "///W/412/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7613, "atom1_serNum": 79454, "atom2_serNum": 79494, "donAcc_type": "standard", "distance": 3.082, "atom1_id": "///W/409/O", "atom2_id": "///W/413/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7614, "atom1_serNum": 79466, "atom2_serNum": 79502, "donAcc_type": "standard", "distance": 3.210, "atom1_id": "///W/410/O", "atom2_id": "///W/414/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7615, "atom1_serNum": 79475, "atom2_serNum": 79511, "donAcc_type": "standard", "distance": 3.488, "atom1_id": "///W/411/O", "atom2_id": "///W/415/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7616, "atom1_serNum": 79486, "atom2_serNum": 79519, "donAcc_type": "standard", "distance": 3.443, "atom1_id": "///W/412/O", "atom2_id": "///W/416/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7617, "atom1_serNum": 79497, "atom2_serNum": 79530, "donAcc_type": "standard", "distance": 3.314, "atom1_id": "///W/413/O", "atom2_id": "///W/417/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7618, "atom1_serNum": 79505, "atom2_serNum": 79538, "donAcc_type": "standard", "distance": 3.097, "atom1_id": "///W/414/O", "atom2_id": "///W/418/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7619, "atom1_serNum": 79510, "atom2_serNum": 79545, "donAcc_type": "standard", "distance": 2.779, "atom1_id": "///W/414/OE2", "atom2_id": "///W/418/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7620, "atom1_serNum": 79510, "atom2_serNum": 79548, "donAcc_type": "standard", "distance": 3.057, "atom1_id": "///W/414/OE2", "atom2_id": "///W/418/NH2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7621, "atom1_serNum": 79514, "atom2_serNum": 79549, "donAcc_type": "standard", "distance": 2.841, "atom1_id": "///W/415/O", "atom2_id": "///W/419/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7622, "atom1_serNum": 79522, "atom2_serNum": 79549, "donAcc_type": "standard", "distance": 3.095, "atom1_id": "///W/416/O", "atom2_id": "///W/419/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7623, "atom1_serNum": 79522, "atom2_serNum": 79557, "donAcc_type": "standard", "distance": 2.913, "atom1_id": "///W/416/O", "atom2_id": "///W/420/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7624, "atom1_serNum": 79533, "atom2_serNum": 79562, "donAcc_type": "standard", "distance": 3.344, "atom1_id": "///W/417/O", "atom2_id": "///W/421/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7625, "atom1_serNum": 79547, "atom2_serNum": 79580, "donAcc_type": "standard", "distance": 2.790, "atom1_id": "///W/418/NH1", "atom2_id": "///W/423/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7626, "atom1_serNum": 79547, "atom2_serNum": 79604, "donAcc_type": "standard", "distance": 2.647, "atom1_id": "///W/418/NH1", "atom2_id": "///W/426/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7627, "atom1_serNum": 79549, "atom2_serNum": 79555, "donAcc_type": "standard", "distance": 2.687, "atom1_id": "///W/419/N", "atom2_id": "///W/419/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7628, "atom1_serNum": 79606, "atom2_serNum": 79611, "donAcc_type": "acceptable", "distance": 3.014, "atom1_id": "///W/426/OG1", "atom2_id": "///W/427/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7629, "atom1_serNum": 79690, "atom2_serNum": 79838, "donAcc_type": "standard", "distance": 3.900, "atom1_id": "///Z/2/N", "atom2_id": "///Z/22/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7630, "atom1_serNum": 79695, "atom2_serNum": 79830, "donAcc_type": "standard", "distance": 3.011, "atom1_id": "///Z/3/N", "atom2_id": "///Z/21/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7631, "atom1_serNum": 79698, "atom2_serNum": 79827, "donAcc_type": "standard", "distance": 3.104, "atom1_id": "///Z/3/O", "atom2_id": "///Z/21/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7632, "atom1_serNum": 79710, "atom2_serNum": 79815, "donAcc_type": "standard", "distance": 2.505, "atom1_id": "///Z/5/N", "atom2_id": "///Z/19/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7633, "atom1_serNum": 79713, "atom2_serNum": 79812, "donAcc_type": "standard", "distance": 2.582, "atom1_id": "///Z/5/O", "atom2_id": "///Z/19/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7634, "atom1_serNum": 79721, "atom2_serNum": 80056, "donAcc_type": "standard", "distance": 3.588, "atom1_id": "///Z/6/O", "atom2_id": "///Z/48/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7635, "atom1_serNum": 79725, "atom2_serNum": 79795, "donAcc_type": "standard", "distance": 2.544, "atom1_id": "///Z/7/N", "atom2_id": "///Z/17/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7636, "atom1_serNum": 79728, "atom2_serNum": 79784, "donAcc_type": "standard", "distance": 3.128, "atom1_id": "///Z/7/O", "atom2_id": "///Z/16/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7637, "atom1_serNum": 79733, "atom2_serNum": 80039, "donAcc_type": "standard", "distance": 2.506, "atom1_id": "///Z/8/N", "atom2_id": "///Z/46/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7638, "atom1_serNum": 79736, "atom2_serNum": 80036, "donAcc_type": "standard", "distance": 2.861, "atom1_id": "///Z/8/O", "atom2_id": "///Z/46/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7639, "atom1_serNum": 79738, "atom2_serNum": 79773, "donAcc_type": "standard", "distance": 2.955, "atom1_id": "///Z/9/N", "atom2_id": "///Z/14/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7640, "atom1_serNum": 79744, "atom2_serNum": 80021, "donAcc_type": "standard", "distance": 3.259, "atom1_id": "///Z/10/N", "atom2_id": "///Z/44/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7641, "atom1_serNum": 79749, "atom2_serNum": 80045, "donAcc_type": "acceptable", "distance": 2.919, "atom1_id": "///Z/10/OG1", "atom2_id": "///Z/46/NH1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7642, "atom1_serNum": 79758, "atom2_serNum": 80016, "donAcc_type": "acceptable", "distance": 3.723, "atom1_id": "///Z/11/OE1", "atom2_id": "///Z/43/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7643, "atom1_serNum": 79760, "atom2_serNum": 79986, "donAcc_type": "standard", "distance": 3.193, "atom1_id": "///Z/12/N", "atom2_id": "///Z/39/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7644, "atom1_serNum": 79790, "atom2_serNum": 80035, "donAcc_type": "standard", "distance": 3.790, "atom1_id": "///Z/16/OD1", "atom2_id": "///Z/45/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7645, "atom1_serNum": 79803, "atom2_serNum": 79946, "donAcc_type": "acceptable", "distance": 2.676, "atom1_id": "///Z/17/OH", "atom2_id": "///Z/35/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7646, "atom1_serNum": 79894, "atom2_serNum": 80050, "donAcc_type": "standard", "distance": 3.165, "atom1_id": "///Z/29/NE", "atom2_id": "///Z/47/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7647, "atom1_serNum": 79897, "atom2_serNum": 80050, "donAcc_type": "standard", "distance": 2.747, "atom1_id": "///Z/29/NH2", "atom2_id": "///Z/47/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7648, "atom1_serNum": 79901, "atom2_serNum": 80054, "donAcc_type": "questionable", "distance": 3.099, "atom1_id": "///Z/30/O", "atom2_id": "///Z/47/OE1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7649, "atom1_serNum": 79913, "atom2_serNum": 80043, "donAcc_type": "standard", "distance": 3.019, "atom1_id": "///Z/31/OE2", "atom2_id": "///Z/46/NE", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7650, "atom1_serNum": 79914, "atom2_serNum": 80029, "donAcc_type": "standard", "distance": 3.262, "atom1_id": "///Z/32/N", "atom2_id": "///Z/45/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7651, "atom1_serNum": 79917, "atom2_serNum": 80026, "donAcc_type": "standard", "distance": 2.658, "atom1_id": "///Z/32/O", "atom2_id": "///Z/45/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7652, "atom1_serNum": 79937, "atom2_serNum": 80011, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///Z/34/O", "atom2_id": "///Z/43/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7653, "atom1_serNum": 79937, "atom2_serNum": 80014, "donAcc_type": "questionable", "distance": 2.758, "atom1_id": "///Z/34/O", "atom2_id": "///Z/43/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7654, "atom1_serNum": 79954, "atom2_serNum": 79990, "donAcc_type": "acceptable", "distance": 3.177, "atom1_id": "///Z/35/OH", "atom2_id": "///Z/40/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7655, "atom1_serNum": 79958, "atom2_serNum": 79987, "donAcc_type": "standard", "distance": 3.495, "atom1_id": "///Z/36/O", "atom2_id": "///Z/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7656, "atom1_serNum": 79964, "atom2_serNum": 79987, "donAcc_type": "standard", "distance": 3.182, "atom1_id": "///Z/37/O", "atom2_id": "///Z/40/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7657, "atom1_serNum": 80008, "atom2_serNum": 80010, "donAcc_type": "acceptable", "distance": 2.987, "atom1_id": "///Z/42/O", "atom2_id": "///Z/42/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7658, "atom1_serNum": 80021, "atom2_serNum": 80032, "donAcc_type": "acceptable", "distance": 2.653, "atom1_id": "///Z/44/O", "atom2_id": "///Z/45/ND1", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7659, "atom1_serNum": 80047, "atom2_serNum": 80054, "donAcc_type": "standard", "distance": 3.126, "atom1_id": "///Z/47/N", "atom2_id": "///Z/47/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7660, "atom1_serNum": 80059, "atom2_serNum": 80061, "donAcc_type": "acceptable", "distance": 2.775, "atom1_id": "///Z/48/O", "atom2_id": "///Z/48/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7661, "atom1_serNum": 80096, "atom2_serNum": 80124, "donAcc_type": "standard", "distance": 3.821, "atom1_id": "///Y/22/N", "atom2_id": "///Y/25/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7662, "atom1_serNum": 80099, "atom2_serNum": 80126, "donAcc_type": "standard", "distance": 3.059, "atom1_id": "///Y/22/O", "atom2_id": "///Y/26/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7663, "atom1_serNum": 80107, "atom2_serNum": 80131, "donAcc_type": "standard", "distance": 3.359, "atom1_id": "///Y/23/O", "atom2_id": "///Y/27/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7664, "atom1_serNum": 80120, "atom2_serNum": 80143, "donAcc_type": "standard", "distance": 2.885, "atom1_id": "///Y/25/O", "atom2_id": "///Y/29/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7665, "atom1_serNum": 80129, "atom2_serNum": 80151, "donAcc_type": "standard", "distance": 2.835, "atom1_id": "///Y/26/O", "atom2_id": "///Y/30/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7666, "atom1_serNum": 80146, "atom2_serNum": 80167, "donAcc_type": "standard", "distance": 2.896, "atom1_id": "///Y/29/O", "atom2_id": "///Y/32/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7667, "atom1_serNum": 80146, "atom2_serNum": 80176, "donAcc_type": "standard", "distance": 3.243, "atom1_id": "///Y/29/O", "atom2_id": "///Y/33/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7668, "atom1_serNum": 80154, "atom2_serNum": 80181, "donAcc_type": "acceptable", "distance": 3.227, "atom1_id": "///Y/30/O", "atom2_id": "///Y/33/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7669, "atom1_serNum": 80161, "atom2_serNum": 80183, "donAcc_type": "standard", "distance": 3.663, "atom1_id": "///Y/31/O", "atom2_id": "///Y/34/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7670, "atom1_serNum": 80166, "atom2_serNum": 81123, "donAcc_type": "standard", "distance": 2.381, "atom1_id": "///Y/31/NZ", "atom2_id": "///Y/178/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7671, "atom1_serNum": 80166, "atom2_serNum": 81136, "donAcc_type": "standard", "distance": 2.470, "atom1_id": "///Y/31/NZ", "atom2_id": "///Y/180/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7672, "atom1_serNum": 80197, "atom2_serNum": 81127, "donAcc_type": "standard", "distance": 3.583, "atom1_id": "///Y/39/OD1", "atom2_id": "///Y/179/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7673, "atom1_serNum": 80198, "atom2_serNum": 81132, "donAcc_type": "acceptable", "distance": 3.223, "atom1_id": "///Y/39/OD2", "atom2_id": "///Y/179/OG", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7674, "atom1_serNum": 80202, "atom2_serNum": 81120, "donAcc_type": "standard", "distance": 2.801, "atom1_id": "///Y/40/O", "atom2_id": "///Y/178/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7675, "atom1_serNum": 80211, "atom2_serNum": 81110, "donAcc_type": "standard", "distance": 2.894, "atom1_id": "///Y/42/N", "atom2_id": "///Y/176/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7676, "atom1_serNum": 80214, "atom2_serNum": 81099, "donAcc_type": "standard", "distance": 3.710, "atom1_id": "///Y/42/O", "atom2_id": "///Y/175/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7677, "atom1_serNum": 80227, "atom2_serNum": 81088, "donAcc_type": "standard", "distance": 3.349, "atom1_id": "///Y/44/N", "atom2_id": "///Y/173/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7678, "atom1_serNum": 80230, "atom2_serNum": 81085, "donAcc_type": "standard", "distance": 3.673, "atom1_id": "///Y/44/O", "atom2_id": "///Y/173/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7679, "atom1_serNum": 80234, "atom2_serNum": 81398, "donAcc_type": "standard", "distance": 2.860, "atom1_id": "///Y/45/N", "atom2_id": "///Y/213/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7680, "atom1_serNum": 80237, "atom2_serNum": 81395, "donAcc_type": "standard", "distance": 2.856, "atom1_id": "///Y/45/O", "atom2_id": "///Y/213/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7681, "atom1_serNum": 80242, "atom2_serNum": 81065, "donAcc_type": "questionable", "distance": 3.356, "atom1_id": "///Y/46/O", "atom2_id": "///Y/170/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7682, "atom1_serNum": 80250, "atom2_serNum": 81383, "donAcc_type": "standard", "distance": 2.948, "atom1_id": "///Y/47/N", "atom2_id": "///Y/211/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7683, "atom1_serNum": 80253, "atom2_serNum": 81371, "donAcc_type": "standard", "distance": 3.655, "atom1_id": "///Y/47/O", "atom2_id": "///Y/210/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7684, "atom1_serNum": 80261, "atom2_serNum": 81065, "donAcc_type": "standard", "distance": 3.464, "atom1_id": "///Y/48/N", "atom2_id": "///Y/170/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7685, "atom1_serNum": 80264, "atom2_serNum": 81379, "donAcc_type": "standard", "distance": 3.350, "atom1_id": "///Y/48/O", "atom2_id": "///Y/210/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7686, "atom1_serNum": 80269, "atom2_serNum": 81355, "donAcc_type": "standard", "distance": 3.525, "atom1_id": "///Y/49/N", "atom2_id": "///Y/208/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7687, "atom1_serNum": 80276, "atom2_serNum": 80296, "donAcc_type": "standard", "distance": 3.114, "atom1_id": "///Y/52/O", "atom2_id": "///Y/55/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7688, "atom1_serNum": 80276, "atom2_serNum": 80302, "donAcc_type": "questionable", "distance": 3.098, "atom1_id": "///Y/52/O", "atom2_id": "///Y/55/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7689, "atom1_serNum": 80283, "atom2_serNum": 80310, "donAcc_type": "questionable", "distance": 3.128, "atom1_id": "///Y/53/O", "atom2_id": "///Y/56/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7690, "atom1_serNum": 80294, "atom2_serNum": 80312, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///Y/54/O", "atom2_id": "///Y/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7691, "atom1_serNum": 80294, "atom2_serNum": 80321, "donAcc_type": "standard", "distance": 2.950, "atom1_id": "///Y/54/O", "atom2_id": "///Y/58/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7692, "atom1_serNum": 80311, "atom2_serNum": 80312, "donAcc_type": "standard", "distance": 2.845, "atom1_id": "///Y/56/OD2", "atom2_id": "///Y/57/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7693, "atom1_serNum": 80315, "atom2_serNum": 80320, "donAcc_type": "standard", "distance": 2.770, "atom1_id": "///Y/57/O", "atom2_id": "///Y/57/NE2", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7694, "atom1_serNum": 80320, "atom2_serNum": 81320, "donAcc_type": "standard", "distance": 3.124, "atom1_id": "///Y/57/NE2", "atom2_id": "///Y/202/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7695, "atom1_serNum": 80348, "atom2_serNum": 80924, "donAcc_type": "standard", "distance": 2.795, "atom1_id": "///Y/60/NH2", "atom2_id": "///Y/141/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7696, "atom1_serNum": 80387, "atom2_serNum": 81209, "donAcc_type": "standard", "distance": 3.134, "atom1_id": "///Y/67/N", "atom2_id": "///Y/188/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7697, "atom1_serNum": 80394, "atom2_serNum": 81173, "donAcc_type": "standard", "distance": 2.597, "atom1_id": "///Y/67/ND2", "atom2_id": "///Y/184/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7698, "atom1_serNum": 80394, "atom2_serNum": 81209, "donAcc_type": "standard", "distance": 2.887, "atom1_id": "///Y/67/ND2", "atom2_id": "///Y/188/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7699, "atom1_serNum": 80409, "atom2_serNum": 81049, "donAcc_type": "standard", "distance": 2.395, "atom1_id": "///Y/73/O", "atom2_id": "///Y/157/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7700, "atom1_serNum": 80415, "atom2_serNum": 80722, "donAcc_type": "standard", "distance": 2.612, "atom1_id": "///Y/74/N", "atom2_id": "///Y/112/OD2", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7701, "atom1_serNum": 80418, "atom2_serNum": 80723, "donAcc_type": "standard", "distance": 3.658, "atom1_id": "///Y/74/O", "atom2_id": "///Y/113/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7702, "atom1_serNum": 80429, "atom2_serNum": 80551, "donAcc_type": "standard", "distance": 3.585, "atom1_id": "///Y/75/O", "atom2_id": "///Y/93/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7703, "atom1_serNum": 80433, "atom2_serNum": 80726, "donAcc_type": "standard", "distance": 3.340, "atom1_id": "///Y/76/N", "atom2_id": "///Y/113/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7704, "atom1_serNum": 80436, "atom2_serNum": 80738, "donAcc_type": "standard", "distance": 3.630, "atom1_id": "///Y/76/O", "atom2_id": "///Y/115/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7705, "atom1_serNum": 80441, "atom2_serNum": 80562, "donAcc_type": "standard", "distance": 3.467, "atom1_id": "///Y/77/N", "atom2_id": "///Y/94/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7706, "atom1_serNum": 80444, "atom2_serNum": 80573, "donAcc_type": "questionable", "distance": 2.781, "atom1_id": "///Y/77/O", "atom2_id": "///Y/95/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7707, "atom1_serNum": 80451, "atom2_serNum": 80755, "donAcc_type": "acceptable", "distance": 3.421, "atom1_id": "///Y/78/O", "atom2_id": "///Y/117/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7708, "atom1_serNum": 80467, "atom2_serNum": 80486, "donAcc_type": "standard", "distance": 3.675, "atom1_id": "///Y/80/O", "atom2_id": "///Y/83/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7709, "atom1_serNum": 80477, "atom2_serNum": 80484, "donAcc_type": "standard", "distance": 2.755, "atom1_id": "///Y/82/N", "atom2_id": "///Y/82/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7710, "atom1_serNum": 80480, "atom2_serNum": 80500, "donAcc_type": "standard", "distance": 2.939, "atom1_id": "///Y/82/O", "atom2_id": "///Y/85/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7711, "atom1_serNum": 80494, "atom2_serNum": 80965, "donAcc_type": "standard", "distance": 3.885, "atom1_id": "///Y/83/NZ", "atom2_id": "///Y/147/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7712, "atom1_serNum": 80498, "atom2_serNum": 80518, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///Y/84/O", "atom2_id": "///Y/87/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7713, "atom1_serNum": 80498, "atom2_serNum": 80523, "donAcc_type": "standard", "distance": 3.329, "atom1_id": "///Y/84/O", "atom2_id": "///Y/88/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7714, "atom1_serNum": 80517, "atom2_serNum": 80982, "donAcc_type": "standard", "distance": 3.867, "atom1_id": "///Y/86/OE2", "atom2_id": "///Y/149/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7715, "atom1_serNum": 80573, "atom2_serNum": 80615, "donAcc_type": "acceptable", "distance": 3.701, "atom1_id": "///Y/95/O", "atom2_id": "///Y/100/OH", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7716, "atom1_serNum": 80602, "atom2_serNum": 80616, "donAcc_type": "standard", "distance": 3.370, "atom1_id": "///Y/99/OD1", "atom2_id": "///Y/101/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7717, "atom1_serNum": 80607, "atom2_serNum": 80641, "donAcc_type": "standard", "distance": 2.872, "atom1_id": "///Y/100/O", "atom2_id": "///Y/104/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7718, "atom1_serNum": 80619, "atom2_serNum": 80649, "donAcc_type": "standard", "distance": 2.715, "atom1_id": "///Y/101/O", "atom2_id": "///Y/105/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7719, "atom1_serNum": 80627, "atom2_serNum": 80652, "donAcc_type": "questionable", "distance": 3.247, "atom1_id": "///Y/102/O", "atom2_id": "///Y/105/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7720, "atom1_serNum": 80657, "atom2_serNum": 80666, "donAcc_type": "questionable", "distance": 3.320, "atom1_id": "///Y/105/NE2", "atom2_id": "///Y/106/NE2", "atom_pair": "N:N", "residue_pair": "aa:aa" }, { "index": 7721, "atom1_serNum": 80674, "atom2_serNum": 80696, "donAcc_type": "standard", "distance": 3.012, "atom1_id": "///Y/108/O", "atom2_id": "///Y/110/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7722, "atom1_serNum": 80696, "atom2_serNum": 80702, "donAcc_type": "standard", "distance": 2.589, "atom1_id": "///Y/110/N", "atom2_id": "///Y/110/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7723, "atom1_serNum": 80748, "atom2_serNum": 80944, "donAcc_type": "questionable", "distance": 3.267, "atom1_id": "///Y/116/O", "atom2_id": "///Y/144/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7724, "atom1_serNum": 80748, "atom2_serNum": 80955, "donAcc_type": "standard", "distance": 3.709, "atom1_id": "///Y/116/O", "atom2_id": "///Y/146/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7725, "atom1_serNum": 80753, "atom2_serNum": 80764, "donAcc_type": "standard", "distance": 2.807, "atom1_id": "///Y/117/O", "atom2_id": "///Y/119/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7726, "atom1_serNum": 80753, "atom2_serNum": 80780, "donAcc_type": "standard", "distance": 3.512, "atom1_id": "///Y/117/O", "atom2_id": "///Y/121/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7727, "atom1_serNum": 80755, "atom2_serNum": 80770, "donAcc_type": "acceptable", "distance": 2.586, "atom1_id": "///Y/117/OG1", "atom2_id": "///Y/119/OD1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7728, "atom1_serNum": 80764, "atom2_serNum": 80770, "donAcc_type": "standard", "distance": 2.650, "atom1_id": "///Y/119/N", "atom2_id": "///Y/119/OD1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7729, "atom1_serNum": 80770, "atom2_serNum": 80772, "donAcc_type": "standard", "distance": 2.718, "atom1_id": "///Y/119/OD1", "atom2_id": "///Y/120/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7730, "atom1_serNum": 80775, "atom2_serNum": 80801, "donAcc_type": "standard", "distance": 2.901, "atom1_id": "///Y/120/O", "atom2_id": "///Y/124/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7731, "atom1_serNum": 80783, "atom2_serNum": 80808, "donAcc_type": "standard", "distance": 2.855, "atom1_id": "///Y/121/O", "atom2_id": "///Y/125/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7732, "atom1_serNum": 80791, "atom2_serNum": 80812, "donAcc_type": "standard", "distance": 2.874, "atom1_id": "///Y/122/O", "atom2_id": "///Y/126/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7733, "atom1_serNum": 80804, "atom2_serNum": 80821, "donAcc_type": "standard", "distance": 3.118, "atom1_id": "///Y/124/O", "atom2_id": "///Y/127/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7734, "atom1_serNum": 80811, "atom2_serNum": 80829, "donAcc_type": "standard", "distance": 3.443, "atom1_id": "///Y/125/O", "atom2_id": "///Y/128/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7735, "atom1_serNum": 80854, "atom2_serNum": 80883, "donAcc_type": "standard", "distance": 3.602, "atom1_id": "///Y/131/O", "atom2_id": "///Y/136/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7736, "atom1_serNum": 80909, "atom2_serNum": 80930, "donAcc_type": "standard", "distance": 3.335, "atom1_id": "///Y/139/O", "atom2_id": "///Y/142/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7737, "atom1_serNum": 80909, "atom2_serNum": 80935, "donAcc_type": "acceptable", "distance": 2.942, "atom1_id": "///Y/139/O", "atom2_id": "///Y/142/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7738, "atom1_serNum": 80912, "atom2_serNum": 80914, "donAcc_type": "standard", "distance": 3.286, "atom1_id": "///Y/139/OD1", "atom2_id": "///Y/140/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7739, "atom1_serNum": 80912, "atom2_serNum": 80929, "donAcc_type": "standard", "distance": 3.868, "atom1_id": "///Y/139/OD1", "atom2_id": "///Y/141/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7740, "atom1_serNum": 80935, "atom2_serNum": 80946, "donAcc_type": "acceptable", "distance": 2.827, "atom1_id": "///Y/142/OG1", "atom2_id": "///Y/144/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7741, "atom1_serNum": 80965, "atom2_serNum": 80982, "donAcc_type": "standard", "distance": 3.143, "atom1_id": "///Y/147/O", "atom2_id": "///Y/149/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7742, "atom1_serNum": 80976, "atom2_serNum": 81007, "donAcc_type": "standard", "distance": 3.098, "atom1_id": "///Y/148/O", "atom2_id": "///Y/152/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7743, "atom1_serNum": 80985, "atom2_serNum": 81012, "donAcc_type": "standard", "distance": 2.961, "atom1_id": "///Y/149/O", "atom2_id": "///Y/153/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7744, "atom1_serNum": 80992, "atom2_serNum": 81020, "donAcc_type": "standard", "distance": 3.520, "atom1_id": "///Y/150/O", "atom2_id": "///Y/154/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7745, "atom1_serNum": 81015, "atom2_serNum": 81041, "donAcc_type": "standard", "distance": 3.360, "atom1_id": "///Y/153/O", "atom2_id": "///Y/157/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7746, "atom1_serNum": 81147, "atom2_serNum": 81170, "donAcc_type": "standard", "distance": 3.429, "atom1_id": "///Y/181/O", "atom2_id": "///Y/184/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7747, "atom1_serNum": 81151, "atom2_serNum": 81169, "donAcc_type": "questionable", "distance": 2.855, "atom1_id": "///Y/181/OE1", "atom2_id": "///Y/183/OE2", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7748, "atom1_serNum": 81161, "atom2_serNum": 81168, "donAcc_type": "standard", "distance": 2.751, "atom1_id": "///Y/183/N", "atom2_id": "///Y/183/OE1", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7749, "atom1_serNum": 81173, "atom2_serNum": 81203, "donAcc_type": "standard", "distance": 2.965, "atom1_id": "///Y/184/O", "atom2_id": "///Y/188/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7750, "atom1_serNum": 81182, "atom2_serNum": 81211, "donAcc_type": "standard", "distance": 2.880, "atom1_id": "///Y/185/O", "atom2_id": "///Y/189/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7751, "atom1_serNum": 81190, "atom2_serNum": 81222, "donAcc_type": "standard", "distance": 2.909, "atom1_id": "///Y/186/O", "atom2_id": "///Y/190/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7752, "atom1_serNum": 81190, "atom2_serNum": 81227, "donAcc_type": "acceptable", "distance": 2.509, "atom1_id": "///Y/186/O", "atom2_id": "///Y/190/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7753, "atom1_serNum": 81197, "atom2_serNum": 81229, "donAcc_type": "standard", "distance": 2.845, "atom1_id": "///Y/187/O", "atom2_id": "///Y/191/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7754, "atom1_serNum": 81197, "atom2_serNum": 81234, "donAcc_type": "acceptable", "distance": 2.731, "atom1_id": "///Y/187/O", "atom2_id": "///Y/191/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7755, "atom1_serNum": 81206, "atom2_serNum": 81236, "donAcc_type": "standard", "distance": 2.990, "atom1_id": "///Y/188/O", "atom2_id": "///Y/192/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7756, "atom1_serNum": 81214, "atom2_serNum": 81244, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///Y/189/O", "atom2_id": "///Y/193/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7757, "atom1_serNum": 81225, "atom2_serNum": 81256, "donAcc_type": "standard", "distance": 2.902, "atom1_id": "///Y/190/O", "atom2_id": "///Y/194/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7758, "atom1_serNum": 81232, "atom2_serNum": 81264, "donAcc_type": "standard", "distance": 2.937, "atom1_id": "///Y/191/O", "atom2_id": "///Y/195/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7759, "atom1_serNum": 81232, "atom2_serNum": 81269, "donAcc_type": "acceptable", "distance": 2.679, "atom1_id": "///Y/191/O", "atom2_id": "///Y/195/OG1", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7760, "atom1_serNum": 81239, "atom2_serNum": 81271, "donAcc_type": "standard", "distance": 2.915, "atom1_id": "///Y/192/O", "atom2_id": "///Y/196/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7761, "atom1_serNum": 81247, "atom2_serNum": 81279, "donAcc_type": "standard", "distance": 2.833, "atom1_id": "///Y/193/O", "atom2_id": "///Y/197/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7762, "atom1_serNum": 81259, "atom2_serNum": 81287, "donAcc_type": "standard", "distance": 2.537, "atom1_id": "///Y/194/O", "atom2_id": "///Y/198/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7763, "atom1_serNum": 81267, "atom2_serNum": 81296, "donAcc_type": "standard", "distance": 3.110, "atom1_id": "///Y/195/O", "atom2_id": "///Y/199/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7764, "atom1_serNum": 81290, "atom2_serNum": 81301, "donAcc_type": "standard", "distance": 2.893, "atom1_id": "///Y/198/O", "atom2_id": "///Y/200/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7765, "atom1_serNum": 81309, "atom2_serNum": 81330, "donAcc_type": "standard", "distance": 3.152, "atom1_id": "///Y/200/NZ", "atom2_id": "///Y/204/O", "atom_pair": "N:O", "residue_pair": "aa:aa" }, { "index": 7766, "atom1_serNum": 81325, "atom2_serNum": 81340, "donAcc_type": "standard", "distance": 2.484, "atom1_id": "///Y/203/O", "atom2_id": "///Y/205/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7767, "atom1_serNum": 81330, "atom2_serNum": 81344, "donAcc_type": "questionable", "distance": 2.885, "atom1_id": "///Y/204/O", "atom2_id": "///Y/206/O", "atom_pair": "O:O", "residue_pair": "aa:aa" }, { "index": 7768, "atom1_serNum": 81335, "atom2_serNum": 81340, "donAcc_type": "standard", "distance": 2.846, "atom1_id": "///Y/205/O", "atom2_id": "///Y/205/NZ", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7769, "atom1_serNum": 81386, "atom2_serNum": 81388, "donAcc_type": "standard", "distance": 2.927, "atom1_id": "///Y/211/OD1", "atom2_id": "///Y/212/N", "atom_pair": "O:N", "residue_pair": "aa:aa" }, { "index": 7770, "atom1_serNum": 81410, "atom2_serNum": 81415, "donAcc_type": "acceptable", "distance": 2.754, "atom1_id": "///W/501/O2G", "atom2_id": "///W/501/O2B", "atom_pair": "O:O", "residue_pair": "ligand:ligand" }, { "index": 7771, "atom1_serNum": 81411, "atom2_serNum": 81419, "donAcc_type": "acceptable", "distance": 2.818, "atom1_id": "///W/501/O3G", "atom2_id": "///W/501/O2A", "atom_pair": "O:O", "residue_pair": "ligand:ligand" }, { "index": 7772, "atom1_serNum": 81415, "atom2_serNum": 81419, "donAcc_type": "acceptable", "distance": 3.048, "atom1_id": "///W/501/O2B", "atom2_id": "///W/501/O2A", "atom_pair": "O:O", "residue_pair": "ligand:ligand" }, { "index": 7773, "atom1_serNum": 81441, "atom2_serNum": 81447, "donAcc_type": "acceptable", "distance": 2.791, "atom1_id": "///W/502/O1G", "atom2_id": "///W/502/O2B", "atom_pair": "O:O", "residue_pair": "ligand:ligand" }, { "index": 7774, "atom1_serNum": 81446, "atom2_serNum": 81451, "donAcc_type": "acceptable", "distance": 2.894, "atom1_id": "///W/502/O1B", "atom2_id": "///W/502/O2A", "atom_pair": "O:O", "residue_pair": "ligand:ligand" } ], "refCoords": { "purine": [ " 12 ATOMS, 12 BONDS", " 1 N -2.2500 5.0000 0.4000", " 2 N -2.2500 -0.5000 0.4000", " 3 N -2.2500 -0.5000 -0.4000", " 4 N -2.2500 5.0000 -0.4000", " 5 C 1.2500 5.0000 0.4000", " 6 C 1.2500 -0.5000 0.4000", " 7 C 1.2500 -0.5000 -0.4000", " 8 C 1.2500 5.0000 -0.4000", " 9 C -2.2500 5.0000 0.4000", " 10 C -2.2500 -0.5000 0.4000", " 11 C -2.2500 -0.5000 -0.4000", " 12 C -2.2500 5.0000 -0.4000", " 1 1 2", " 2 2 3", " 3 3 4", " 4 4 1", " 5 5 6", " 6 6 7", " 7 7 8", " 8 5 8", " 9 9 5", " 10 10 6", " 11 11 7", " 12 12 8" ], "pyrimidine": [ " 12 ATOMS, 12 BONDS", " 1 N -2.2500 5.0000 0.4000", " 2 N -2.2500 1.0000 0.4000", " 3 N -2.2500 1.0000 -0.4000", " 4 N -2.2500 5.0000 -0.4000", " 5 C 1.2500 5.0000 0.4000", " 6 C 1.2500 1.0000 0.4000", " 7 C 1.2500 1.0000 -0.4000", " 8 C 1.2500 5.0000 -0.4000", " 9 C -2.2500 5.0000 0.4000", " 10 C -2.2500 1.0000 0.4000", " 11 C -2.2500 1.0000 -0.4000", " 12 C -2.2500 5.0000 -0.4000", " 1 1 2", " 2 2 3", " 3 3 4", " 4 4 1", " 5 5 6", " 6 6 7", " 7 7 8", " 8 5 8", " 9 9 5", " 10 10 6", " 11 11 7", " 12 12 8" ], "wc_pair": [ " 12 ATOMS, 12 BONDS", " 1 N -2.2500 5.0000 0.4000", " 2 N -2.2500 -5.0000 0.4000", " 3 N -2.2500 -5.0000 -0.4000", " 4 N -2.2500 5.0000 -0.4000", " 5 C 2.2500 5.0000 0.4000", " 6 C 2.2500 -5.0000 0.4000", " 7 C 2.2500 -5.0000 -0.4000", " 8 C 2.2500 5.0000 -0.4000", " 9 C -2.2500 5.0000 0.4000", " 10 C -2.2500 -5.0000 0.4000", " 11 C -2.2500 -5.0000 -0.4000", " 12 C -2.2500 5.0000 -0.4000", " 1 1 2", " 2 2 3", " 3 3 4", " 4 4 1", " 5 5 6", " 6 6 7", " 7 7 8", " 8 5 8", " 9 9 5", " 10 10 6", " 11 11 7", " 12 12 8" ] }, "metadata": { "license": "http://innovation.columbia.edu/technologies/CU20391", "url": "http://x3dna.org/", "url_alt": "http://home.x3dna.org/", "forum": "http://forum.x3dna.org/", "citation": "Lu et al. (2015). 'DSSR: an integrated software tool for dissecting the spatial structure of RNA.' Nucleic Acids Res., 43(21):e142 [doi:10.1093/nar/gkv716].", "str_id": "9bs0", "num_aaChains": 23, "aaChains": "C=266,D=184,E=205,F=65,G=144,H=121,I=117,J=119,K=112,L=117,M=101,N=109,O=91,P=93,Q=62,R=65,S=58,T=52,U=44,V=106,W=413,Y=178,Z=47", "num_naChains": 2, "naChains": "A=2678,B=111", "num_atoms": 81446, "num_waters": 0, "num_notes": 52, "notes": [ { "Aminors": "A-minor interactions (including types I and II)" }, { "Cstem_index": "stem index of the 'Canonical' helix in k-turn" }, { "Cstem_pair": "Cstem bp delineating the k-turn internal loop" }, { "Dp": "perpendicular distance of the 3' P atom to the glycosidic bond" }, { "GA_pair": "sheared G-A pair in k-turn" }, { "HtypePknot": "H-type pseudoknot" }, { "Kturn": "kink-turn (k-turn)" }, { "LW": "Leontis-Westhof" }, { "NCstem_index": "stem index of the 'Non-Canonical' helix in k-turn" }, { "NCstem_pair": "NCstem bp delineating the k-turn internal loop" }, { "Uturn": "U-turn of the UNR- or GNRA-type" }, { "aa": "amino acid" }, { "atom_pair": "symbols of the two atoms involved in an H-bond" }, { "auxfiles": "auxiliary files" }, { "glyco_bond": "conformation of base related to sugar (syn or anti)" }, { "bb_type": "backbone conformation, BI or BII" }, { "bending_angle": "angle between two helical axes" }, { "bp": "base pair" }, { "bseq": "base sequence in one-letter code" }, { "bulge": "bulge loop" }, { "coaxStacks": "coaxial stacking of stems within a helix" }, { "dbn": "dot bracket notation" }, { "desc": "description" }, { "donAcc_type": "donor/acceptor type of the atom pair in an H-bond" }, { "epsilon_zeta": "difference between epsilon and zeta torsion angles" }, { "hairpin": "hairpin loop" }, { "hbond": "hydrogen bond (H-bond)" }, { "helix": "defined by base-stacking interactions, regardless of bp type and backbone connectivity" }, { "id": "identifier" }, { "iloop": "internal loop" }, { "index": "serial number" }, { "isoCanonPairs": "isolated canonical pairs" }, { "junction": "(multi-branched) junction loop" }, { "kissingLoop": "kissing loop" }, { "multiplet": "3+ bases in a coplanar geometry" }, { "na": "nucleic acid" }, { "nonPair": "two nts not forming a pair, but with H-bonding/stacking interactions" }, { "nonStack": "nucleotide not involved in stacking interactions" }, { "nt": "nucleotide" }, { "num": "number" }, { "oArea": "overlap areas between two bases, including exocyclic atoms" }, { "oArea_ring": "overlap areas between two bases, including only ring atoms" }, { "phosContacts": "H-bonding and atom-capping interactions involving a phosphate" }, { "residue_pair": "types of the two residues involved in an H-bond" }, { "rmsd": "root-mean-squares deviation" }, { "serNum": "serial number" }, { "ssSegments": "single-stranded segments not involved in loops" }, { "ssZp": "Z-coordinate of the 3' phosphorus atom with reference to the 5' base plane" }, { "sstr": "secondary structure in dbn" }, { "stem": "helix consisting of only canonical pairs, with a continuous backbone" }, { "str_id": "structure identifier, derived from inpfile with extension removed" }, { "vert_dist": "vertical distance from an atom to a base plane" } ], "num_auxfiles": 21, "auxfiles": [ { "index": 1, "name": "dssr-pairs.pdb", "desc": "an ensemble of base pairs" }, { "index": 2, "name": "dssr-multiplets.pdb", "desc": "an ensemble of multiplets" }, { "index": 3, "name": "dssr-stems.pdb", "desc": "an ensemble of stems" }, { "index": 4, "name": "dssr-helices.pdb", "desc": "an ensemble of helices (coaxial stacking)" }, { "index": 5, "name": "dssr-hairpins.pdb", "desc": "an ensemble of hairpin loops" }, { "index": 6, "name": "dssr-bulges.pdb", "desc": "an ensemble of bulges" }, { "index": 7, "name": "dssr-iloops.pdb", "desc": "an ensemble of internal loops" }, { "index": 8, "name": "dssr-junctions.pdb", "desc": "an ensemble of junctions (multi-branch)" }, { "index": 9, "name": "dssr-2ndstrs.bpseq", "desc": "secondary structure in bpseq format" }, { "index": 10, "name": "dssr-2ndstrs.ct", "desc": "secondary structure in connectivity table format" }, { "index": 11, "name": "dssr-2ndstrs.dbn", "desc": "secondary structure in dot-bracket notation" }, { "index": 12, "name": "dssr-torsions.txt", "desc": "backbone torsion angles and suite names" }, { "index": 13, "name": "dssr-splays.pdb", "desc": "an ensemble of splayed-apart units" }, { "index": 14, "name": "dssr-Aminors.pdb", "desc": "an ensemble of A minor motifs (types I and II)" }, { "index": 15, "name": "dssr-Kturns.pdb", "desc": "an ensemble of kink-turn motifs" }, { "index": 16, "name": "dssr-stacks.pdb", "desc": "an ensemble of base stacks" }, { "index": 17, "name": "dssr-atom2bases.pdb", "desc": "an ensemble of atom-base stacking interactions" }, { "index": 18, "name": "dssr-rotmat.txt", "desc": "position vector and rotation matrix" }, { "index": 19, "name": "dssr-viewV.pdb", "desc": "vertical view of the principal moment of inertia" }, { "index": 20, "name": "dssr-viewH.pdb", "desc": "horizontal view of the principal moment of inertia" }, { "index": 21, "name": "dssr-viewT.pdb", "desc": "top view of the principal moment of inertia" } ], "time_used": "999" } }