**************************************************************************** File name: 9bs0.pdb no. of DNA/RNA chains: 2 [A=2678,B=111] no. of nucleotides: 2791 no. of atoms: 81446 no. of waters: 0 no. of metals: 0 **************************************************************************** List of 1 type of 2 modified nucleotides nt count list 1 GNP-g 2 W.GNP501,W.GNP502 **************************************************************************** List of 1243 base pairs nt1 nt2 bp name Saenger LW DSSR 1 A.U3 A.A2924 U-A WC 20-XX cWW cW-W 2 A.U4 A.A2923 U-A WC 20-XX cWW cW-W 3 A.A5 A.U2922 A-U WC 20-XX cWW cW-W 4 A.A6 A.U2921 A-U WC 20-XX cWW cW-W 5 A.G7 A.C2920 G-C WC 19-XIX cWW cW-W 6 A.U8 A.A2919 U-A WC 20-XX cWW cW-W 7 A.U9 A.A2658 U-A rHoogsteen 24-XXIV tWH tW-M 8 A.A13 A.A14 A+A Platform -- cSH cm+M 9 A.G15 A.U571 G-U Wobble 28-XXVIII cWW cW-W 10 A.G16 A.C570 G-C WC 19-XIX cWW cW-W 11 A.G17 A.C569 G-C WC 19-XIX cWW cW-W 12 A.C18 A.G568 C-G WC 19-XIX cWW cW-W 13 A.G19 A.U567 G-U Wobble 28-XXVIII cWW cW-W 14 A.C20 A.G566 C-G WC 19-XIX cWW cW-W 15 A.A21 A.U565 A-U WC 20-XX cWW cW-W 16 A.C22 A.G564 C-G WC 19-XIX cWW cW-W 17 A.G23 A.C563 G-C WC 19-XIX cWW cW-W 18 A.G24 A.C562 G-C WC 19-XIX cWW cW-W 19 A.U25 A.A561 U-A -- -- tWH tW-M 20 A.G26 A.A560 G-A Sheared 11-XI tSH tm-M 21 A.G27 A.A559 G-A Sheared 11-XI tSH tm-M 22 A.A28 A.G558 A-G Sheared 11-XI tHS tM-m 23 A.U29 A.U557 U-U -- 16-XVI cWW cW-W 24 A.G30 A.C556 G-C WC 19-XIX cWW cW-W 25 A.C31 A.G521 C-G WC 19-XIX cWW cW-W 26 A.C32 A.G520 C-G WC 19-XIX cWW cW-W 27 A.U33 A.A494 U-A rHoogsteen 24-XXIV tWH tW-M 28 A.G35 A.C492 G-C WC 19-XIX cWW cW-W 29 A.G35 A.A496 G+A -- -- t.W t.+W 30 A.G35 A.G497 G+G -- 04-IV tSS tm+m 31 A.G36 A.C491 G-C WC 19-XIX cWW cW-W 32 A.C37 A.G489 C-G WC 19-XIX cWW cW-W 33 A.A38 A.U488 A-U WC 20-XX cWW cW-W 34 A.C39 A.G487 C-G WC 19-XIX cWW cW-W 35 A.C39 A.A659 C-A -- -- cSW cm-W 36 A.U40 A.A486 U-A WC 20-XX cWW cW-W 37 A.A41 A.U485 A-U WC 20-XX cWW cW-W 38 A.G42 A.C484 G-C WC 19-XIX cWW cW-W 39 A.G43 A.C483 G-C WC 19-XIX cWW cW-W 40 A.A44 A.U481 A-U WC 20-XX cWW cW-W 41 A.G45 A.A183 G+A -- 10-X tSW tm+W 42 A.G45 A.C480 G-C WC 19-XIX cWW cW-W 43 A.C46 A.G181 C-G WC 19-XIX cWW cW-W 44 A.C47 A.G180 C-G WC 19-XIX cWW cW-W 45 A.A49 A.U119 A+U Hoogsteen 23-XXIII cHW cM+W 46 A.G51 A.A117 G-A Sheared 11-XI tSH tm-M 47 A.G51 A.U119 G+U -- -- tWW tW+W 48 A.A52 A.A118 A+A -- 02-II tHH tM+M 49 A.A53 A.G116 A-G Sheared 11-XI tHS tM-m 50 A.G54 A.C115 G-C WC 19-XIX cWW cW-W 51 A.G54 A.A125 G+A Linker -- t.W t.+W 52 A.G55 A.C114 G-C WC 19-XIX cWW cW-W 53 A.G55 A.A126 G+A Linker -- tSW tm+W 54 A.A56 A.U113 A-U WC 20-XX cWW cW-W 55 A.C57 A.G70 C-G WC 19-XIX cWW cW-W 56 A.G58 A.C69 G-C WC 19-XIX cWW cW-W 57 A.G58 A.A73 G+A Linker -- tSS tm+m 58 A.G59 A.C68 G-C WC 19-XIX cWW cW-W 59 A.G60 A.C66 G-C -- -- -- -- 60 A.G60 A.G88 G+G -- 06-VI cWH cW+M 61 A.A61 A.C93 A-C -- -- cWW cW-W 62 A.C62 A.G92 C-G WC 19-XIX cWW cW-W 63 A.A64 A.A90 A+A -- 01-I tWW tW+W 64 A.A65 A.U89 A-U WC 20-XX cWW cW-W 65 A.A65 A.C503 A-C -- -- cSW cm-W 66 A.C66 A.G88 C-G WC 19-XIX cWW cW-W 67 A.A67 A.U74 A-U WC 20-XX cWW cW-W 68 A.G70 A.A71 G-A Platform -- cSW cm-W 69 A.G75 A.A110 G-A -- -- cWW cW-W 70 A.C76 A.G109 C-G WC 19-XIX cWW cW-W 71 A.U77 A.A108 U-A WC 20-XX cWW cW-W 72 A.U78 A.G107 U-G Wobble 28-XXVIII cWW cW-W 73 A.C79 A.G106 C-G WC 19-XIX cWW cW-W 74 A.G80 A.C105 G-C WC 19-XIX cWW cW-W 75 A.G80 A.A337 G-A -- -- tSH tm-M 76 A.G81 A.C104 G-C WC 19-XIX cWW cW-W 77 A.G82 A.U103 G-U -- -- t.H t.-M 78 A.G83 A.A102 G-A Sheared 11-XI tSH tm-M 79 A.A84 A.G101 A-G Sheared 11-XI tHS tM-m 80 A.G85 A.C97 G-C WC 19-XIX cWW cW-W 81 A.G85 A.A102 G+A Linker -- tS. tm+. 82 A.C86 A.G96 C-G WC 19-XIX cWW cW-W 83 A.U87 A.A95 U-A WC 20-XX cWW cW-W 84 A.G120 A.C129 G-C WC 19-XIX cWW cW-W 85 A.G121 A.C128 G-C WC 19-XIX cWW cW-W 86 A.G122 A.C127 G-C WC 19-XIX cWW cW-W 87 A.A130 A.U149 A-U WC 20-XX cWW cW-W 88 A.C131 A.G148 C-G WC 19-XIX cWW cW-W 89 A.C132 A.G147 C-G WC 19-XIX cWW cW-W 90 A.A133 A.U146 A-U WC 20-XX cWW cW-W 91 A.C134 A.G145 C-G WC 19-XIX cWW cW-W 92 A.U135 A.A144 U-A WC 20-XX cWW cW-W 93 A.C136 A.G143 C-G WC 19-XIX cWW cW-W 94 A.G137 A.G142 G-G -- -- tSH tm-M 95 A.A139 A.G1639 A+G -- 10-X .WS .W+m 96 A.C152 A.G177 C-G WC 19-XIX cWW cW-W 97 A.C152 A.A178 C-A -- -- cWW cW-W 98 A.C153 A.G175 C-G WC 19-XIX cWW cW-W 99 A.A154 A.U174 A-U WC 20-XX cWW cW-W 100 A.U155 A.A173 U-A WC 20-XX cWW cW-W 101 A.A156 A.U172 A-U WC 20-XX cWW cW-W 102 A.U157 A.A171 U-A WC 20-XX cWW cW-W 103 A.C158 A.G170 C-G WC 19-XIX cWW cW-W 104 A.U159 A.G169 U-G -- -- cWW cW-W 105 A.G160 A.A168 G-A Sheared 11-XI tSH tm-M 106 A.A161 A.U167 A-U rHoogsteen 24-XXIV tHW tM-W 107 A.A162 A.A166 A-A -- -- tHW tM-W 108 A.A162 A.U167 A-U -- -- tHW tM-W 109 A.A162 A.G2246 A+G Linker -- tSS tm+m 110 A.A185 A.G218 A-G Imino 08-VIII cWW cW-W 111 A.C186 A.G217 C-G WC 19-XIX cWW cW-W 112 A.C187 A.G215 C-G WC 19-XIX cWW cW-W 113 A.C188 A.G214 C-G WC 19-XIX cWW cW-W 114 A.G189 A.C213 G-C WC 19-XIX cWW cW-W 115 A.G190 A.C212 G-C WC 19-XIX cWW cW-W 116 A.G191 A.C211 G-C WC 19-XIX cWW cW-W 117 A.G192 A.A210 G-A Sheared 11-XI tSH tm-M 118 A.A193 A.U209 A-U rHoogsteen 24-XXIV tHW tM-W 119 A.A194 A.A207 A+A -- 02-II tHH tM+M 120 A.C195 A.A206 C-A ~Sheared -- tHS tM-m 121 A.U196 A.U205 U-U -- 16-XVI cWW cW-W 122 A.G197 A.C204 G-C WC 19-XIX cWW cW-W 123 A.G208 A.U209 G+U Platform -- cSH cm+M 124 A.G218 A.A479 G+A -- -- tSW tm+W 125 A.A219 A.U478 A+U -- -- tHH tM+M 126 A.A224 A.A268 A+A -- -- cWH cW+M 127 A.A225 A.G235 A-G Sheared 11-XI .HS .M-m 128 A.G227 A.C234 G-C WC 19-XIX cWW cW-W 129 A.C228 A.G233 C-G WC 19-XIX cWW cW-W 130 A.A229 A.U465 A-U -- -- cWS cW-m 131 A.A230 A.G457 A+G -- 10-X tWS tW+m 132 A.A236 A.A476 A+A -- -- tWW tW+W 133 A.U237 A.A477 U+A rWC 21-XXI tWW tW+W 134 A.U238 A.A265 U-A WC 20-XX cWW cW-W 135 A.C239 A.G264 C-G WC 19-XIX cWW cW-W 136 A.C240 A.G263 C-G WC 19-XIX cWW cW-W 137 A.C241 A.G262 C-G WC 19-XIX cWW cW-W 138 A.G243 A.A260 G-A Sheared 11-XI tSH tm-M 139 A.G243 A.C261 G-C -- -- cSW cm-W 140 A.A244 A.A259 A+A -- 02-II tHH tM+M 141 A.G245 A.U246 G+U Platform -- cSH cm+M 142 A.U246 A.A258 U-A rHoogsteen 24-XXIV tWH tW-M 143 A.A247 A.G257 A-G Sheared 11-XI tHS tM-m 144 A.G248 A.C256 G-C WC 19-XIX cWW cW-W 145 A.C249 A.G255 C-G WC 19-XIX cWW cW-W 146 A.G250 A.A254 G-A -- -- tSH tm-M 147 A.U266 A.A476 U-A -- -- cSS cm-m 148 A.G269 A.C473 G-C WC 19-XIX cWW cW-W 149 A.C270 A.G472 C-G WC 19-XIX cWW cW-W 150 A.C271 A.G471 C-G WC 19-XIX cWW cW-W 151 A.C272 A.G417 C-G WC 19-XIX cWW cW-W 152 A.A273 A.U298 A-U rHoogsteen 24-XXIV tHW tM-W 153 A.A274 A.U298 A-U -- -- tHW tM-W 154 A.A274 A.C415 A-C -- -- cSS cm-m 155 A.A275 A.G297 A-G -- -- .WS .W-m 156 A.C276 A.G295 C-G WC 19-XIX cWW cW-W 157 A.C277 A.G294 C-G WC 19-XIX cWW cW-W 158 A.A278 A.U293 A-U WC 20-XX cWW cW-W 159 A.A279 A.U292 A-U WC 20-XX cWW cW-W 160 A.G280 A.C291 G-C -- -- cWW cW-W 161 A.A281 A.U290 A-U WC 20-XX cWW cW-W 162 A.G282 A.C289 G-C WC 19-XIX cWW cW-W 163 A.G283 A.C288 G-C WC 19-XIX cWW cW-W 164 A.U299 A.U416 U+U -- -- tWW tW+W 165 A.G300 A.C451 G-C WC 19-XIX cWW cW-W 166 A.A302 A.U416 A-U WC 20-XX cWW cW-W 167 A.G303 A.C415 G-C WC 19-XIX cWW cW-W 168 A.G304 A.G411 G-G -- -- tHW tM-W 169 A.G304 A.C414 G-C WC 19-XIX cWW cW-W 170 A.A305 A.U413 A-U WC 20-XX cWW cW-W 171 A.C306 A.G410 C-G WC 19-XIX cWW cW-W 172 A.C306 A.A412 C-A -- -- tSW tm-W 173 A.A307 A.U409 A-U WC 20-XX cWW cW-W 174 A.C308 A.G408 C-G WC 19-XIX cWW cW-W 175 A.U309 A.A407 U-A WC 20-XX cWW cW-W 176 A.C310 A.G406 C-G WC 19-XIX cWW cW-W 177 A.U311 A.U405 U-U -- 16-XVI cWW cW-W 178 A.G316 A.C404 G-C WC 19-XIX cWW cW-W 179 A.G317 A.C403 G-C WC 19-XIX cWW cW-W 180 A.A318 A.U402 A-U WC 20-XX cWW cW-W 181 A.G319 A.A326 G+A -- 10-X tSW tm+W 182 A.G319 A.C401 G-C WC 19-XIX cWW cW-W 183 A.U320 A.G327 U+G -- -- cWH cW+M 184 A.A325 A.U402 A-U -- -- cWS cW-m 185 A.G327 A.U400 G-U Wobble 28-XXVIII cWW cW-W 186 A.G328 A.C399 G-C WC 19-XIX cWW cW-W 187 A.A329 A.U398 A-U WC 20-XX cWW cW-W 188 A.A330 A.U397 A-U WC 20-XX cWW cW-W 189 A.C331 A.G396 C-G WC 19-XIX cWW cW-W 190 A.G332 A.C395 G-C WC 19-XIX cWW cW-W 191 A.A333 A.U394 A-U WC 20-XX cWW cW-W 192 A.G334 A.U393 G-U -- -- cWW cW-W 193 A.G335 A.C392 G-C WC 19-XIX cWW cW-W 194 A.U336 A.A391 U-A WC 20-XX cWW cW-W 195 A.G338 A.C387 G-C WC 19-XIX cWW cW-W 196 A.A339 A.U386 A-U WC 20-XX cWW cW-W 197 A.U340 A.G385 U-G Wobble 28-XXVIII cWW cW-W 198 A.G341 A.A384 G-A Sheared 11-XI tSH tm-M 199 A.A342 A.G382 A-G -- -- tH. tM-. 200 A.A342 A.U383 A-U -- -- ..W ..-W 201 A.A343 A.G382 A-G -- -- -- -- 202 A.G344 A.C360 G-C WC 19-XIX cWW cW-W 203 A.G346 A.C359 G-C WC 19-XIX cWW cW-W 204 A.G347 A.C358 G-C WC 19-XIX cWW cW-W 205 A.U348 A.G357 U-G Wobble 28-XXVIII cWW cW-W 206 A.C349 A.G356 C-G WC 19-XIX cWW cW-W 207 A.U350 A.A354 U-A rHoogsteen 24-XXIV tWH tW-M 208 A.G351 A.A374 G-A -- -- tSW tm-W 209 A.G352 A.A373 G+A Linker -- tSS tm+m 210 A.G361 A.C378 G-C WC 19-XIX cWW cW-W 211 A.C362 A.G377 C-G WC 19-XIX cWW cW-W 212 A.C363 A.G367 C-G WC 19-XIX cWW cW-W 213 A.G368 A.G382 G-G ~Sheared -- tHS tM-m 214 A.A369 A.U381 A-U WC 20-XX cWW cW-W 215 A.G370 A.C380 G-C WC 19-XIX cWW cW-W 216 A.G371 A.C379 G-C WC 19-XIX cWW cW-W 217 A.U372 A.A376 U-A rHoogsteen 24-XXIV tWH tW-M 218 A.A389 A.A390 A+A Platform -- cSH cm+M 219 A.A418 A.A449 A+A -- -- tHH tM+M 220 A.G419 A.U420 G+U Platform -- cSH cm+M 221 A.U420 A.A448 U-A rHoogsteen 24-XXIV tWH tW-M 222 A.U420 A.A449 U-A -- -- tWH tW-M 223 A.A421 A.G447 A-G Sheared 11-XI tHS tM-m 224 A.C422 A.G446 C-G WC 19-XIX cWW cW-W 225 A.G423 A.C445 G-C WC 19-XIX cWW cW-W 226 A.G424 A.U444 G-U Wobble 28-XXVIII cWW cW-W 227 A.C425 A.G443 C-G WC 19-XIX cWW cW-W 228 A.G426 A.C442 G-C WC 19-XIX cWW cW-W 229 A.G427 A.C441 G-C WC 19-XIX cWW cW-W 230 A.A428 A.U434 A-U -- -- cHH cM-M 231 A.A428 A.U440 A-U WC 20-XX cWW cW-W 232 A.A429 A.U439 A-U WC 20-XX cWW cW-W 233 A.C430 A.A437 C-A -- -- cWW cW-W 234 A.C430 A.A438 C-A -- -- tWH tW-M 235 A.G453 A.C468 G-C WC 19-XIX cWW cW-W 236 A.G454 A.C467 G-C WC 19-XIX cWW cW-W 237 A.G455 A.C466 G-C WC 19-XIX cWW cW-W 238 A.A456 A.U465 A-U WC 20-XX cWW cW-W 239 A.G457 A.C464 G-C WC 19-XIX cWW cW-W 240 A.C460 A.G2439 C-G ~Wobble -- cWW cW-W 241 A.U463 A.A2436 U-A WC 20-XX cWW cW-W 242 A.U463 A.U2437 U-U -- -- cWW cW-W 243 A.U481 A.C482 U-C Platform -- cSW cm-W 244 A.A490 A.G1285 A+G Linker -- tWS tW+m 245 A.C492 A.A496 C-A -- -- cSW cm-W 246 A.G493 A.A501 G+A -- 10-X tSW tm+W 247 A.U495 A.G626 U+G -- -- tW. tW+. 248 A.G499 A.A504 G+A Linker -- tSS tm+m 249 A.A504 A.A518 A+A -- 02-II tHH tM+M 250 A.G505 A.U506 G+U Platform -- cSH cm+M 251 A.U506 A.A517 U-A rHoogsteen 24-XXIV tWH tW-M 252 A.A507 A.G516 A-G Sheared 11-XI tHS tM-m 253 A.C508 A.G515 C-G WC 19-XIX cWW cW-W 254 A.C509 A.G514 C-G WC 19-XIX cWW cW-W 255 A.G510 A.A513 G-A Sheared 11-XI tSH tm-M 256 A.G512 A.U730 G-U -- -- cSS cm-m 257 A.A513 A.C842 A+C -- -- tWS tW+m 258 A.U522 A.A526 U-A rHoogsteen 24-XXIV tWH tW-M 259 A.G523 A.A527 G-A Sheared 11-XI tSH tm-M 260 A.A526 A.A549 A+A -- 01-I tWW tW+W 261 A.G528 A.C555 G-C WC 19-XIX cWW cW-W 262 A.C529 A.A543 C-A -- -- cSW cm-W 263 A.A530 A.A543 A-A ~Sheared -- tHS tM-m 264 A.C531 A.G542 C-G WC 19-XIX cWW cW-W 265 A.C532 A.G541 C-G WC 19-XIX cWW cW-W 266 A.C533 A.G540 C-G WC 19-XIX cWW cW-W 267 A.C534 A.G539 C-G WC 19-XIX cWW cW-W 268 A.G544 A.G552 G-G -- -- .WH .W-M 269 A.U545 A.A549 U-A rHoogsteen 24-XXIV tWH tW-M 270 A.G546 A.A551 G-A Sheared 11-XI tSH tm-M 271 A.A572 A.G2654 A+G Linker -- tSS tm+m 272 A.A575 A.U2070 A-U rHoogsteen 24-XXIV tHW tM-W 273 A.U577 A.A2047 U-A WC 20-XX cWW cW-W 274 A.A578 A.A2049 A-A -- -- cWS cW-m 275 A.G579 A.C604 G-C WC 19-XIX cWW cW-W 276 A.U580 A.G603 U-G Wobble 28-XXVIII cWW cW-W 277 A.C581 A.G602 C-G WC 19-XIX cWW cW-W 278 A.A582 A.U601 A-U WC 20-XX cWW cW-W 279 A.G583 A.A600 G-A Sheared 11-XI tSH tm-M 280 A.A584 A.G599 A-G Sheared 11-XI tHS tM-m 281 A.G585 A.U598 G-U Wobble 28-XXVIII cWW cW-W 282 A.C586 A.G597 C-G WC 19-XIX cWW cW-W 283 A.C587 A.G596 C-G WC 19-XIX cWW cW-W 284 A.C588 A.G595 C-G WC 19-XIX cWW cW-W 285 A.U590 A.A593 U+A Hoogsteen 23-XXIII cWH cW+M 286 A.U591 A.A1269 U-A WC 20-XX cWW cW-W 287 A.G595 A.A1260 G-A -- -- cSW cm-W 288 A.U606 A.A2062 U-A WC 20-XX cWW cW-W 289 A.G607 A.A622 G-A Imino 08-VIII cWW cW-W 290 A.C608 A.G621 C-G WC 19-XIX cWW cW-W 291 A.C609 A.U620 C-U -- 18-XVIII cWW cW-W 292 A.U610 A.A619 U-A WC 20-XX cWW cW-W 293 A.U612 A.G614 U-G -- -- tSH tm-M 294 A.U612 A.A2059 U-A -- -- c.W c.-W 295 A.U613 A.A1029 U-A -- -- cSW cm-W 296 A.A616 A.G2058 A+G -- 10-X tWS tW+m 297 A.A623 A.U1301 A-U WC 20-XX cWW cW-W 298 A.C624 A.G1300 C-G WC 19-XIX cWW cW-W 299 A.C625 A.G1299 C-G WC 19-XIX cWW cW-W 300 A.G626 A.C1298 G-C WC 19-XIX cWW cW-W 301 A.G627 A.C1297 G-C WC 19-XIX cWW cW-W 302 A.C628 A.G1296 C-G WC 19-XIX cWW cW-W 303 A.G629 A.A1294 G-A Sheared 11-XI tSH tm-M 304 A.A630 A.G856 A+G Linker -- tSS tm+m 305 A.G631 A.U857 G+U -- -- cHW cM+W 306 A.U632 A.A717 U+A -- -- tWS tW+m 307 A.U633 A.A715 U-A WC 20-XX cWW cW-W 308 A.A634 A.U714 A-U WC 20-XX cWW cW-W 309 A.C635 A.G713 C-G WC 19-XIX cWW cW-W 310 A.G636 A.C712 G-C WC 19-XIX cWW cW-W 311 A.A637 A.U711 A-U WC 20-XX cWW cW-W 312 A.U638 A.G710 U-G Wobble 28-XXVIII cWW cW-W 313 A.C639 A.G709 C-G WC 19-XIX cWW cW-W 314 A.U640 A.U708 U-U -- -- cWW cW-W 315 A.C641 A.G707 C-G WC 19-XIX cWW cW-W 316 A.G642 A.C706 G-C WC 19-XIX cWW cW-W 317 A.U643 A.A705 U-A WC 20-XX cWW cW-W 318 A.G644 A.U704 G-U Wobble 28-XXVIII cWW cW-W 319 A.C645 A.G703 C-G WC 19-XIX cWW cW-W 320 A.A647 A.G671 A+G Linker -- tWS tW+m 321 A.G648 A.C670 G-C WC 19-XIX cWW cW-W 322 A.G649 A.C669 G-C WC 19-XIX cWW cW-W 323 A.U650 A.G668 U-G Wobble 28-XXVIII cWW cW-W 324 A.U651 A.A667 U-A rHoogsteen 24-XXIV tWH tW-M 325 A.A653 A.G665 A-G Sheared 11-XI tHS tM-m 326 A.G654 A.C664 G-C WC 19-XIX cWW cW-W 327 A.C655 A.G663 C-G WC 19-XIX cWW cW-W 328 A.A656 A.U662 A-U WC 20-XX cWW cW-W 329 A.G657 A.A661 G-A Sheared 11-XI tSH tm-M 330 A.G666 A.G668 G+G -- -- cSH cm+M 331 A.G674 A.C681 G-C WC 19-XIX cWW cW-W 332 A.C675 A.G680 C-G WC 19-XIX cWW cW-W 333 A.G676 A.A679 G-A -- -- tSH tm-M 334 A.A683 A.G697 A+G Linker -- tWS tW+m 335 A.G684 A.C696 G-C WC 19-XIX cWW cW-W 336 A.U685 A.G695 U-G Wobble 28-XXVIII cWW cW-W 337 A.C686 A.G694 C-G WC 19-XIX cWW cW-W 338 A.U687 A.G693 U-G Wobble 28-XXVIII cWW cW-W 339 A.G688 A.A692 G-A Sheared 11-XI tSH tm-M 340 A.A689 A.A2398 A+A -- -- tHS tM+m 341 A.A690 A.G2378 A+G -- -- tWS tW+m 342 A.A692 A.G2378 A+G Linker -- tSS tm+m 343 A.C718 A.G856 C-G WC 19-XIX cWW cW-W 344 A.C719 A.G855 C-G WC 19-XIX cWW cW-W 345 A.C720 A.U854 C-U -- -- cWW cW-W 346 A.G721 A.C853 G-C WC 19-XIX cWW cW-W 347 A.A722 A.U850 A-U rHoogsteen 24-XXIV tHW tM-W 348 A.A722 A.C2472 A-C -- -- cSS cm-m 349 A.A723 A.A849 A-A -- 05-V tHW tM-W 350 A.A723 A.G2098 A+G Linker -- tSS tm+m 351 A.A724 A.A847 A+A -- 01-I tWW tW+W 352 A.C725 A.G846 C-G WC 19-XIX cWW cW-W 353 A.C726 A.G845 C-G WC 19-XIX cWW cW-W 354 A.A727 A.U844 A-U WC 20-XX cWW cW-W 355 A.G728 A.C843 G-C WC 19-XIX cWW cW-W 356 A.G729 A.C842 G-C WC 19-XIX cWW cW-W 357 A.U730 A.A841 U-A WC 20-XX cWW cW-W 358 A.G731 A.G822 G-G -- 07-VII tWH tW-M 359 A.A732 A.U735 A-U -- -- tHW tM-W 360 A.A732 A.G825 A-G -- -- .WS .W-m 361 A.C734 A.A1809 C-A -- -- cSW cm-W 362 A.A736 A.U820 A-U WC 20-XX cWW cW-W 363 A.C737 A.G819 C-G WC 19-XIX cWW cW-W 364 A.C738 A.G818 C-G WC 19-XIX cWW cW-W 365 A.C739 A.G817 C-G WC 19-XIX cWW cW-W 366 A.A740 A.U816 A-U WC 20-XX cWW cW-W 367 A.U741 A.G815 U-G Wobble 28-XXVIII cWW cW-W 368 A.G742 A.U814 G-U Wobble 28-XXVIII cWW cW-W 369 A.U743 A.G813 U-G Wobble 28-XXVIII cWW cW-W 370 A.C744 A.G812 C-G WC 19-XIX cWW cW-W 371 A.C745 A.G810 C-G WC 19-XIX cWW cW-W 372 A.A746 A.G780 A-G Sheared 11-XI tHS tM-m 373 A.G747 A.C779 G-C WC 19-XIX cWW cW-W 374 A.G748 A.C778 G-C WC 19-XIX cWW cW-W 375 A.G749 A.C777 G-C WC 19-XIX cWW cW-W 376 A.U750 A.G775 U-G Wobble 28-XXVIII cWW cW-W 377 A.G751 A.A774 G-A Sheared 11-XI tSH tm-M 378 A.A752 A.G773 A-G Sheared 11-XI tHS tM-m 379 A.A753 A.G772 A-G Sheared 11-XI tHS tM-m 380 A.G754 A.U771 G-U Wobble 28-XXVIII cWW cW-W 381 A.U755 A.A770 U-A WC 20-XX cWW cW-W 382 A.U756 A.A769 U-A WC 20-XX cWW cW-W 383 A.C757 A.G768 C-G WC 19-XIX cWW cW-W 384 A.A758 A.U767 A-U WC 20-XX cWW cW-W 385 A.G759 A.C766 G-C WC 19-XIX cWW cW-W 386 A.G760 A.A765 G+A -- 10-X tSW tm+W 387 A.G760 A.C766 G-C -- -- cSW cm-W 388 A.U761 A.A765 U+A -- -- cSW cm+W 389 A.G776 A.C1803 G-C WC 19-XIX cWW cW-W 390 A.C783 A.G807 C-G WC 19-XIX cWW cW-W 391 A.C784 A.G806 C-G WC 19-XIX cWW cW-W 392 A.C785 A.G805 C-G WC 19-XIX cWW cW-W 393 A.A786 A.C787 A+C Platform -- cSH cm+M 394 A.C787 A.G804 C-G WC 19-XIX cWW cW-W 395 A.G788 A.C803 G-C WC 19-XIX cWW cW-W 396 A.C789 A.G802 C-G WC 19-XIX cWW cW-W 397 A.A790 A.U801 A-U WC 20-XX cWW cW-W 398 A.C791 A.G800 C-G WC 19-XIX cWW cW-W 399 A.G792 A.A797 G+A -- 10-X tSW tm+W 400 A.U793 A.G795 U-G -- -- .SS .m-m 401 A.U794 A.A2043 U-A -- -- cWS cW-m 402 A.A796 A.G800 A-G -- -- cWS cW-m 403 A.A799 A.U2638 A-U WC 20-XX cWW cW-W 404 A.G805 A.A2010 G+A -- -- cSH cm+M 405 A.A811 A.U1804 A+U Hoogsteen 23-XXIII cHW cM+W 406 A.A811 A.A1818 A-A -- -- cWS cW-m 407 A.G817 A.A1393 G+A Linker -- tSS tm+m 408 A.A821 A.G824 A-G -- -- cSS cm-m 409 A.G822 A.C838 G-C WC 19-XIX cWW cW-W 410 A.G824 A.C834 G-C WC 19-XIX cWW cW-W 411 A.G825 A.C833 G-C WC 19-XIX cWW cW-W 412 A.U826 A.G832 U-G Wobble 28-XXVIII cWW cW-W 413 A.G827 A.A830 G-A -- -- tSH tm-M 414 A.A828 A.G1805 A+G Linker -- tWS tW+m 415 A.U831 A.A840 U+A -- -- cHW cM+W 416 A.G852 A.G2096 G-G -- -- cSS cm-m 417 A.G855 A.A1294 G-A -- -- cSS cm-m 418 A.C859 A.G1236 C-G WC 19-XIX cWW cW-W 419 A.U860 A.A1235 U-A WC 20-XX cWW cW-W 420 A.C861 A.G1234 C-G WC 19-XIX cWW cW-W 421 A.U862 A.A1233 U-A WC 20-XX cWW cW-W 422 A.C863 A.G1232 C-G WC 19-XIX cWW cW-W 423 A.C864 A.G1231 C-G WC 19-XIX cWW cW-W 424 A.G865 A.A1230 G-A Sheared 11-XI tSH tm-M 425 A.A867 A.A1019 A+A -- 02-II tHH tM+M 426 A.A868 A.G1018 A-G Sheared 11-XI tHS tM-m 427 A.U869 A.A882 U-A WC 20-XX cWW cW-W 428 A.A870 A.U881 A-U WC 20-XX cWW cW-W 429 A.G871 A.C880 G-C WC 19-XIX cWW cW-W 430 A.G871 A.A2387 G+A -- -- tSH tm+M 431 A.C872 A.G879 C-G WC 19-XIX cWW cW-W 432 A.U874 A.U2097 U+U -- -- .SW .m+W 433 A.G883 A.U989 G-U Wobble 28-XXVIII cWW cW-W 434 A.C884 A.G988 C-G WC 19-XIX cWW cW-W 435 A.C885 A.G986 C-G WC 19-XIX cWW cW-W 436 A.U886 A.G985 U-G Wobble 28-XXVIII cWW cW-W 437 A.C887 A.G984 C-G WC 19-XIX cWW cW-W 438 A.A888 A.U983 A-U WC 20-XX cWW cW-W 439 A.A889 A.U982 A-U WC 20-XX cWW cW-W 440 A.G890 A.C981 G-C WC 19-XIX cWW cW-W 441 A.G891 A.C980 G-C WC 19-XIX cWW cW-W 442 A.U892 A.A894 U-A -- -- cSW cm-W 443 A.A894 A.U979 A+U Hoogsteen 23-XXIII cHW cM+W 444 A.A894 A.C980 A+C -- -- cHW cM+W 445 A.G895 A.U977 G-U Wobble 28-XXVIII cWW cW-W 446 A.A896 A.U976 A-U WC 20-XX cWW cW-W 447 A.G897 A.C975 G-C WC 19-XIX cWW cW-W 448 A.U898 A.A974 U-A WC 20-XX cWW cW-W 449 A.C899 A.G973 C-G WC 19-XIX cWW cW-W 450 A.U900 A.G973 U-G -- -- cWW cW-W 451 A.U901 A.A971 U+A Hoogsteen 23-XXIII cHW cM+W 452 A.G902 A.C969 G+C -- -- cWH cW+M 453 A.G903 A.C968 G+C -- -- cHW cM+W 454 A.A904 A.G967 A-G Imino 08-VIII cWW cW-W 455 A.A904 A.C968 A-C -- -- cWW cW-W 456 A.U907 A.A964 U-A -- -- tWH tW-M 457 A.U907 A.A2297 U+A -- -- tHH tM+M 458 A.A908 A.G963 A-G Sheared 11-XI tHS tM-m 459 A.G909 A.C962 G-C WC 19-XIX cWW cW-W 460 A.A910 A.C961 A-C -- -- cWW cW-W 461 A.G911 A.A913 G+A -- -- tSW tm+W 462 A.G911 A.C914 G+C -- -- cWH cW+M 463 A.G911 A.C959 G-C WC 19-XIX cWW cW-W 464 A.G911 A.U960 G-U -- -- cWW cW-W 465 A.C912 A.U915 C+U -- -- tWH tW+M 466 A.C912 A.A956 C-A ~rHoogsteen 25-XXV tWH tW-M 467 A.A913 A.U960 A-U -- -- cWS cW-m 468 A.C914 A.C959 C-C -- -- cWS cW-m 469 A.U915 A.A956 U-A WC 20-XX cWW cW-W 470 A.G916 A.C955 G-C WC 19-XIX cWW cW-W 471 A.A917 A.U954 A-U WC 20-XX cWW cW-W 472 A.U918 A.A952 U-A -- -- cWW cW-W 473 A.U918 A.G953 U-G -- -- cWW cW-W 474 A.U919 A.A952 U-A WC 20-XX cWW cW-W 475 A.G920 A.C951 G-C WC 19-XIX cWW cW-W 476 A.A965 A.A2297 A-A -- -- cHW cM-W 477 A.G992 A.C1017 G-C WC 19-XIX cWW cW-W 478 A.A993 A.U1016 A-U WC 20-XX cWW cW-W 479 A.A993 A.G1030 A-G -- -- tSH tm-M 480 A.C994 A.G1015 C-G WC 19-XIX cWW cW-W 481 A.U995 A.A1014 U-A WC 20-XX cWW cW-W 482 A.G996 A.U1013 G-U Wobble 28-XXVIII cWW cW-W 483 A.C997 A.G1012 C-G WC 19-XIX cWW cW-W 484 A.G998 A.C1011 G-C WC 19-XIX cWW cW-W 485 A.A999 A.C1010 A-C -- -- cWW cW-W 486 A.G1000 A.U1009 G-U Wobble 28-XXVIII cWW cW-W 487 A.G1000 A.A2303 G+A -- -- tSW tm+W 488 A.U1001 A.A1008 U-A WC 20-XX cWW cW-W 489 A.G1002 A.A1006 G-A -- -- tWH tW-M 490 A.A1019 A.G1228 A-G -- -- cSS cm-m 491 A.A1020 A.A1036 A-A ~Sheared -- tSH tm-M 492 A.A1021 A.A1034 A-A -- -- tH. tM-. 493 A.A1021 A.G1035 A-G Sheared 11-XI tHS tM-m 494 A.G1022 A.C1033 G-C WC 19-XIX cWW cW-W 495 A.G1022 A.A1201 G-A -- -- cSS cm-m 496 A.G1023 A.C1032 G-C WC 19-XIX cWW cW-W 497 A.G1023 A.A1047 G+A Linker -- tSS tm+m 498 A.G1024 A.C1031 G-C WC 19-XIX cWW cW-W 499 A.C1037 A.G1209 C-G WC 19-XIX cWW cW-W 500 A.C1038 A.G1208 C-G WC 19-XIX cWW cW-W 501 A.G1039 A.C1207 G-C WC 19-XIX cWW cW-W 502 A.C1040 A.G1206 C-G WC 19-XIX cWW cW-W 503 A.A1042 A.U1205 A-U WC 20-XX cWW cW-W 504 A.G1043 A.C1204 G-C WC 19-XIX cWW cW-W 505 A.C1044 A.G1203 C-G WC 19-XIX cWW cW-W 506 A.U1045 A.A1201 U-A rHoogsteen 24-XXIV tWH tW-M 507 A.A1047 A.G1200 A-G Sheared 11-XI tHS tM-m 508 A.G1048 A.C1199 G-C WC 19-XIX cWW cW-W 509 A.G1049 A.A1056 G+A Linker -- tSW tm+W 510 A.G1049 A.C1198 G-C WC 19-XIX cWW cW-W 511 A.U1050 A.A1197 U-A WC 20-XX cWW cW-W 512 A.C1051 A.G1184 C-G WC 19-XIX cWW cW-W 513 A.C1052 A.G1183 C-G WC 19-XIX cWW cW-W 514 A.C1053 A.G1182 C-G WC 19-XIX cWW cW-W 515 A.A1055 A.C1199 A-C -- -- cWS cW-m 516 A.G1057 A.C1196 G-C WC 19-XIX cWW cW-W 517 A.A1059 A.U1195 A-U WC 20-XX cWW cW-W 518 A.U1060 A.A1194 U-A WC 20-XX cWW cW-W 519 A.A1061 A.U1193 A-U WC 20-XX cWW cW-W 520 A.C1062 A.G1192 C-G WC 19-XIX cWW cW-W 521 A.C1062 A.U1193 C-U -- 18-XVIII cWW cW-W 522 A.G1063 A.C1191 G-C WC 19-XIX cWW cW-W 523 A.U1064 A.A1190 U-A WC 20-XX cWW cW-W 524 A.U1064 A.C1191 U-C -- 18-XVIII cWW cW-W 525 A.U1065 A.A1188 U-A rHoogsteen 24-XXIV tWH tW-M 526 A.A1067 A.U1187 A-U rHoogsteen 24-XXIV tHW tM-W 527 A.G1070 A.C1186 G-C WC 19-XIX cWW cW-W 528 A.G1071 A.G1185 G+G -- 03-III tWW tW+W 529 A.A1075 A.G1171 A-G Sheared 11-XI tHS tM-m 530 A.G1076 A.C1170 G-C WC 19-XIX cWW cW-W 531 A.G1077 A.C1169 G-C WC 19-XIX cWW cW-W 532 A.A1078 A.G1168 A-G -- -- cWW cW-W 533 A.U1079 A.A2779 U+A -- -- cWH cW+M 534 A.G1080 A.C1167 G-C WC 19-XIX cWW cW-W 535 A.U1081 A.G1166 U-G -- -- cWW cW-W 536 A.G1082 A.U1165 G-U Wobble 28-XXVIII cWW cW-W 537 A.G1083 A.C1164 G-C WC 19-XIX cWW cW-W 538 A.G1083 A.U1165 G-U -- -- cWW cW-W 539 A.A1084 A.G1085 A+G Platform -- cSH cm+M 540 A.A1084 A.C1164 A-C -- -- cSW cm-W 541 A.U1086 A.C1162 U-C -- -- cWW cW-W 542 A.U1087 A.A1161 U-A -- -- cSW cm-W 543 A.G1088 A.U1159 G-U Wobble 28-XXVIII cWW cW-W 544 A.C1089 A.G1158 C-G WC 19-XIX cWW cW-W 545 A.C1089 A.U1159 C-U -- 18-XVIII cWW cW-W 546 A.U1090 A.G1158 U-G -- -- cSW cm-W 547 A.C1095 A.G2780 C-G WC 19-XIX cWW cW-W 548 A.A1097 A.G1156 A-G -- -- cWS cW-m 549 A.C1098 A.U1154 C-U -- -- cWS cW-m 550 A.G1177 A.U1178 G+U Platform -- cSH cm+M 551 A.A1179 A.G2067 A-G -- -- cW. cW-. 552 A.C1181 A.G1184 C-G -- -- tWH tW-M 553 A.G1185 A.A1189 G+A Linker -- tSW tm+W 554 A.A1210 A.U1226 A-U WC 20-XX cWW cW-W 555 A.C1211 A.G1225 C-G WC 19-XIX cWW cW-W 556 A.U1212 A.A1224 U-A WC 20-XX cWW cW-W 557 A.G1213 A.C1223 G-C WC 19-XIX cWW cW-W 558 A.U1214 A.A1222 U-A WC 20-XX cWW cW-W 559 A.U1215 A.A1221 U-A WC 20-XX cWW cW-W 560 A.C1216 A.G1220 C-G WC 19-XIX cWW cW-W 561 A.C1216 A.A1221 C-A -- -- cWW cW-W 562 A.C1237 A.G1290 C-G WC 19-XIX cWW cW-W 563 A.G1238 A.U1289 G-U -- -- cWW cW-W 564 A.U1239 A.A1287 U-A WC 20-XX cWW cW-W 565 A.U1240 A.A1286 U-A WC 20-XX cWW cW-W 566 A.C1241 A.G1285 C-G WC 19-XIX cWW cW-W 567 A.U1242 A.A1284 U-A WC 20-XX cWW cW-W 568 A.A1243 A.U1283 A-U WC 20-XX cWW cW-W 569 A.A1244 A.U1282 A+U -- -- cHW cM+W 570 A.G1245 A.C1281 G-C -- -- cHH cM-M 571 A.G1246 A.G1280 G+G -- 06-VI cHW cM+W 572 A.G1247 A.C1279 G-C WC 19-XIX cWW cW-W 573 A.C1248 A.G1278 C-G WC 19-XIX cWW cW-W 574 A.U1249 A.G1278 U-G -- -- cWW cW-W 575 A.G1252 A.A1277 G-A Sheared 11-XI tSH tm-M 576 A.A1253 A.G1276 A-G Sheared 11-XI tHS tM-m 577 A.A1254 A.G1275 A-G Sheared 11-XI tHS tM-m 578 A.G1255 A.U1274 G-U Wobble 28-XXVIII cWW cW-W 579 A.C1256 A.G1273 C-G WC 19-XIX cWW cW-W 580 A.C1257 A.G1272 C-G WC 19-XIX cWW cW-W 581 A.A1258 A.U1271 A-U WC 20-XX cWW cW-W 582 A.G1259 A.C1270 G-C WC 19-XIX cWW cW-W 583 A.C1261 A.G1268 C-G WC 19-XIX cWW cW-W 584 A.C1262 A.G1267 C-G WC 19-XIX cWW cW-W 585 A.A1302 A.U2046 A-U WC 20-XX cWW cW-W 586 A.U1303 A.U2045 U-U -- 16-XVI cWW cW-W 587 A.G1304 A.A2044 G-A Sheared 11-XI tSH tm-M 588 A.A1305 A.A2043 A+A -- 02-II tHH tM+M 589 A.G1306 A.U1307 G+U Platform -- cSH cm+M 590 A.U1307 A.A2042 U-A rHoogsteen 24-XXIV tWH tW-M 591 A.A1308 A.G2041 A-G Sheared 11-XI tHS tM-m 592 A.G1309 A.C1364 G+C -- -- tSW tm+W 593 A.G1309 A.U2040 G-U Wobble 28-XXVIII cWW cW-W 594 A.C1310 A.G2039 C-G WC 19-XIX cWW cW-W 595 A.G1311 A.C1660 G+C rWC 22-XXII tWW tW+W 596 A.G1315 A.C1333 G-C WC 19-XIX cWW cW-W 597 A.A1316 A.U1332 A-U WC 20-XX cWW cW-W 598 A.G1317 A.C1331 G-C WC 19-XIX cWW cW-W 599 A.G1318 A.C1330 G-C WC 19-XIX cWW cW-W 600 A.G1319 A.C1329 G-C WC 19-XIX cWW cW-W 601 A.G1320 A.C1328 G-C WC 19-XIX cWW cW-W 602 A.U1321 A.A1325 U-A rHoogsteen 24-XXIV tWH tW-M 603 A.G1322 A.U1368 G+U -- -- cSH cm+M 604 A.C1334 A.G1690 C-G WC 19-XIX cWW cW-W 605 A.A1335 A.U1689 A-U WC 20-XX cWW cW-W 606 A.C1336 A.G1688 C-G WC 19-XIX cWW cW-W 607 A.C1337 A.G1687 C-G WC 19-XIX cWW cW-W 608 A.G1338 A.A1686 G-A Sheared 11-XI tSH tm-M 609 A.A1340 A.A1686 A-A -- 05-V tHW tM-W 610 A.G1342 A.C1670 G-C WC 19-XIX cWW cW-W 611 A.C1343 A.G1669 C-G WC 19-XIX cWW cW-W 612 A.C1344 A.G1668 C-G WC 19-XIX cWW cW-W 613 A.U1345 A.G1668 U-G -- -- cWW cW-W 614 A.A1347 A.G1651 A+G -- -- tHH tM+M 615 A.G1348 A.C1650 G-C WC 19-XIX cWW cW-W 616 A.G1349 A.C1649 G-C WC 19-XIX cWW cW-W 617 A.U1352 A.A1648 U-A WC 20-XX cWW cW-W 618 A.C1353 A.G1377 C-G WC 19-XIX cWW cW-W 619 A.C1354 A.G1376 C-G WC 19-XIX cWW cW-W 620 A.C1354 A.G1431 C-G -- -- cSS cm-m 621 A.U1355 A.A1375 U-A WC 20-XX cWW cW-W 622 A.G1356 A.C1374 G-C WC 19-XIX cWW cW-W 623 A.A1357 A.U1373 A-U WC 20-XX cWW cW-W 624 A.G1358 A.C1372 G-C WC 19-XIX cWW cW-W 625 A.G1359 A.C1370 G-C -- -- tWH tW-M 626 A.G1359 A.C1372 G-C -- -- cWW cW-W 627 A.A1361 A.C1372 A-C -- -- cWS cW-m 628 A.G1362 A.C1370 G-C WC 19-XIX cWW cW-W 629 A.G1363 A.C1369 G-C WC 19-XIX cWW cW-W 630 A.C1370 A.A1661 C-A -- -- c.W c.-W 631 A.G1377 A.A1432 G+A Linker -- tSW tm+W 632 A.A1381 A.U1647 A-U rHoogsteen 24-XXIV tHW tM-W 633 A.G1382 A.C1443 G-C WC 19-XIX cWW cW-W 634 A.U1383 A.A1442 U-A WC 20-XX cWW cW-W 635 A.C1384 A.G1646 C-G WC 19-XIX cWW cW-W 636 A.G1385 A.C1645 G-C WC 19-XIX cWW cW-W 637 A.G1386 A.C1644 G-C WC 19-XIX cWW cW-W 638 A.G1387 A.C1643 G-C WC 19-XIX cWW cW-W 639 A.C1389 A.G1420 C-G WC 19-XIX cWW cW-W 640 A.C1390 A.G1419 C-G WC 19-XIX cWW cW-W 641 A.U1391 A.A1417 U-A rHoogsteen 24-XXIV tWH tW-M 642 A.A1392 A.U1418 A-U -- -- cWW cW-W 643 A.A1393 A.G1416 A-G Sheared 11-XI tHS tM-m 644 A.G1394 A.C1415 G-C WC 19-XIX cWW cW-W 645 A.C1395 A.G1414 C-G WC 19-XIX cWW cW-W 646 A.C1396 A.G1413 C-G WC 19-XIX cWW cW-W 647 A.G1397 A.A1412 G-A Sheared 11-XI tSH tm-M 648 A.A1398 A.U1411 A-U rHoogsteen 24-XXIV tHW tM-W 649 A.A1398 A.A2241 A+A -- -- tWW tW+W 650 A.G1399 A.C2243 G+C rWC 22-XXII tWW tW+W 651 A.G1400 A.C1409 G-C WC 19-XIX cWW cW-W 652 A.C1401 A.G1408 C-G WC 19-XIX cWW cW-W 653 A.C1402 A.G1407 C-G WC 19-XIX cWW cW-W 654 A.G1403 A.A1406 G-A -- -- tSH tm-M 655 A.G1419 A.A1618 G+A -- -- tSW tm+W 656 A.A1424 A.U1441 A-U WC 20-XX cWW cW-W 657 A.C1425 A.G1440 C-G WC 19-XIX cWW cW-W 658 A.A1426 A.U1439 A-U WC 20-XX cWW cW-W 659 A.G1427 A.C1438 G-C WC 19-XIX cWW cW-W 660 A.G1428 A.C1437 G-C WC 19-XIX cWW cW-W 661 A.U1429 A.A1434 U-A rHoogsteen 24-XXIV tWH tW-M 662 A.C1444 A.G1642 C-G WC 19-XIX cWW cW-W 663 A.A1445 A.U1641 A-U WC 20-XX cWW cW-W 664 A.C1446 A.G1640 C-G WC 19-XIX cWW cW-W 665 A.C1447 A.G1639 C-G WC 19-XIX cWW cW-W 666 A.U1448 A.A1638 U-A WC 20-XX cWW cW-W 667 A.C1449 A.G1639 C-G -- -- .WS .W-m 668 A.C1450 A.G1637 C-G WC 19-XIX cWW cW-W 669 A.U1451 A.A1636 U-A WC 20-XX cWW cW-W 670 A.C1452 A.G1635 C-G WC 19-XIX cWW cW-W 671 A.A1453 A.U1634 A-U WC 20-XX cWW cW-W 672 A.C1454 A.G1633 C-G WC 19-XIX cWW cW-W 673 A.C1455 A.G1632 C-G WC 19-XIX cWW cW-W 674 A.A1456 A.A1631 A+A -- -- tSW tm+W 675 A.G1460 A.A1631 G-A Sheared 11-XI tSH tm-M 676 A.A1461 A.G1630 A-G Sheared 11-XI tHS tM-m 677 A.G1462 A.C1629 G-C WC 19-XIX cWW cW-W 678 A.C1463 A.G1628 C-G WC 19-XIX cWW cW-W 679 A.A1464 A.A1627 A-A ~Sheared -- tSH tm-M 680 A.A1465 A.U1626 A-U rHoogsteen 24-XXIV tHW tM-W 681 A.G1467 A.A1540 G+A -- -- tSW tm+W 682 A.G1467 A.A1541 G+A -- -- tSW tm+W 683 A.G1467 A.C1625 G-C WC 19-XIX cWW cW-W 684 A.G1468 A.U1624 G-U Wobble 28-XXVIII cWW cW-W 685 A.G1469 A.C1623 G-C WC 19-XIX cWW cW-W 686 A.G1470 A.C1622 G-C WC 19-XIX cWW cW-W 687 A.G1471 A.G1621 G-G -- -- tSH tm-M 688 A.G1472 A.A1620 G-A Sheared 11-XI tSH tm-M 689 A.A1473 A.A1619 A+A -- 02-II tHH tM+M 690 A.C1474 A.A1618 C-A -- -- tWH tW-M 691 A.G1475 A.C1612 G-C WC 19-XIX cWW cW-W 692 A.C1476 A.G1611 C-G WC 19-XIX cWW cW-W 693 A.A1477 A.C1607 A-C ~rHoogsteen 25-XXV tHW tM-W 694 A.A1477 A.U1610 A-U WC 20-XX cWW cW-W 695 A.G1478 A.C1609 G-C WC 19-XIX cWW cW-W 696 A.G1479 A.A1608 G-A Imino 08-VIII cWW cW-W 697 A.A1480 A.A1606 A-A -- -- c.W c.-W 698 A.G1481 A.C1605 G-C WC 19-XIX cWW cW-W 699 A.G1482 A.A1562 G-A -- -- tSH tm-M 700 A.G1482 A.C1604 G-C WC 19-XIX cWW cW-W 701 A.A1483 A.U1603 A-U WC 20-XX cWW cW-W 702 A.U1484 A.A1601 U-A rHoogsteen 24-XXIV tWH tW-M 703 A.A1485 A.G1600 A-G -- -- tWH tW-M 704 A.G1486 A.U1599 G-U Wobble 28-XXVIII cWW cW-W 705 A.G1487 A.C1598 G-C WC 19-XIX cWW cW-W 706 A.G1488 A.C1597 G-C WC 19-XIX cWW cW-W 707 A.U1489 A.U1596 U-U -- 16-XVI cWW cW-W 708 A.A1490 A.U1595 A-U WC 20-XX cWW cW-W 709 A.A1491 A.G1512 A+G -- -- .WW .W+W 710 A.G1492 A.C1511 G-C WC 19-XIX cWW cW-W 711 A.G1492 A.A1593 G-A -- -- cSS cm-m 712 A.C1493 A.G1510 C-G WC 19-XIX cWW cW-W 713 A.G1494 A.C1509 G-C WC 19-XIX cWW cW-W 714 A.C1495 A.C1508 C-C -- -- cWW cW-W 715 A.G1496 A.U1507 G-U Wobble 28-XXVIII cWW cW-W 716 A.G1497 A.U1505 G-U -- -- cWW cW-W 717 A.U1501 A.C2733 U-C -- 18-XVIII cWW cW-W 718 A.G1502 A.C2732 G-C WC 19-XIX cWW cW-W 719 A.G1503 A.G2731 G+G -- 06-VI .HW .M+W 720 A.U1513 A.G1572 U-G Wobble 28-XXVIII cWW cW-W 721 A.C1514 A.G1571 C-G WC 19-XIX cWW cW-W 722 A.C1515 A.A1569 C-A ~rHoogsteen -- tWH tW-M 723 A.A1516 A.G1568 A+G -- -- tHH tM+M 724 A.A1517 A.U1567 A-U ~Wobble -- cWW cW-W 725 A.C1519 A.G1566 C-G WC 19-XIX cWW cW-W 726 A.A1520 A.C1564 A-C ~Wobble -- cWW cW-W 727 A.A1520 A.U1565 A-U -- -- cWW cW-W 728 A.G1521 A.G1563 G-G -- -- cWW cW-W 729 A.U1522 A.A1562 U+A -- -- tWW tW+W 730 A.A1524 A.U1560 A-U WC 20-XX cWW cW-W 731 A.G1525 A.C1559 G-C WC 19-XIX cWW cW-W 732 A.G1526 A.C1558 G-C WC 19-XIX cWW cW-W 733 A.C1527 A.G1557 C-G WC 19-XIX cWW cW-W 734 A.G1529 A.C1552 G-C WC 19-XIX cWW cW-W 735 A.G1530 A.C1551 G-C WC 19-XIX cWW cW-W 736 A.G1530 A.C1552 G-C -- -- cWW cW-W 737 A.G1531 A.C1550 G-C WC 19-XIX cWW cW-W 738 A.A1532 A.U1549 A-U WC 20-XX cWW cW-W 739 A.A1533 A.U1548 A-U WC 20-XX cWW cW-W 740 A.A1534 A.U1547 A-U WC 20-XX cWW cW-W 741 A.G1537 A.C1545 G-C WC 19-XIX cWW cW-W 742 A.G1538 A.C1544 G-C WC 19-XIX cWW cW-W 743 A.C1573 A.G1594 C-G WC 19-XIX cWW cW-W 744 A.G1574 A.A1593 G-A Sheared 11-XI tSH tm-M 745 A.A1575 A.G1591 A-G Sheared 11-XI tHS tM-m 746 A.G1576 A.C1590 G-C WC 19-XIX cWW cW-W 747 A.C1577 A.G1589 C-G WC 19-XIX cWW cW-W 748 A.G1578 A.A1588 G-A Sheared 11-XI tSH tm-M 749 A.U1582 A.G1586 U-G ~Sheared -- tHS tM-m 750 A.U1602 A.A1679 U-A rHoogsteen 24-XXIV tWH tW-M 751 A.C1613 A.G1616 C-G WC 19-XIX cWW cW-W 752 A.A1653 A.U1666 A-U rHoogsteen 24-XXIV tHW tM-W 753 A.C1656 A.G1665 C-G WC 19-XIX cWW cW-W 754 A.C1657 A.G1664 C-G WC 19-XIX cWW cW-W 755 A.A1672 A.U1684 A-U WC 20-XX cWW cW-W 756 A.G1673 A.C1683 G-C WC 19-XIX cWW cW-W 757 A.G1674 A.C1682 G-C WC 19-XIX cWW cW-W 758 A.A1675 A.U1681 A-U WC 20-XX cWW cW-W 759 A.G1676 A.A1680 G-A Sheared 11-XI tSH tm-M 760 A.U1681 A.A1789 U-A -- -- cSS cm-m 761 A.C1693 A.G2038 C-G WC 19-XIX cWW cW-W 762 A.G1694 A.C2037 G-C WC 19-XIX cWW cW-W 763 A.A1695 A.U2036 A-U WC 20-XX cWW cW-W 764 A.G1696 A.C2035 G-C WC 19-XIX cWW cW-W 765 A.A1700 A.A2034 A-A ~Sheared -- tHS tM-m 766 A.C1701 A.G2033 C-G WC 19-XIX cWW cW-W 767 A.U1702 A.A2032 U-A WC 20-XX cWW cW-W 768 A.C1703 A.G2031 C-G WC 19-XIX cWW cW-W 769 A.U1704 A.A2030 U-A WC 20-XX cWW cW-W 770 A.C1705 A.G2029 C-G WC 19-XIX cWW cW-W 771 A.G1706 A.C2028 G-C WC 19-XIX cWW cW-W 772 A.U1707 A.A2027 U-A WC 20-XX cWW cW-W 773 A.U1708 A.A2026 U-A WC 20-XX cWW cW-W 774 A.A1709 A.C2025 A+C -- -- ..W ..+W 775 A.A1710 A.U2024 A-U WC 20-XX cWW cW-W 776 A.G1711 A.C2023 G-C WC 19-XIX cWW cW-W 777 A.G1712 A.A1714 G-A -- -- cSH cm-M 778 A.A1713 A.C1715 A+C -- -- tSH tm+M 779 A.A1713 A.C1720 A+C -- -- cWH cW+M 780 A.A1713 A.A1721 A+A -- -- .WW .W+W 781 A.A1713 A.U2020 A-U rHoogsteen 24-XXIV tHW tM-W 782 A.A1714 A.U2022 A-U WC 20-XX cWW cW-W 783 A.G1719 A.A1721 G+A -- -- tSH tm+M 784 A.G1719 A.A1722 G+A -- 10-X tSW tm+W 785 A.G1719 A.C2019 G-C WC 19-XIX cWW cW-W 786 A.A1727 A.U1751 A-U WC 20-XX cWW cW-W 787 A.C1728 A.G1750 C-G WC 19-XIX cWW cW-W 788 A.C1729 A.G1749 C-G WC 19-XIX cWW cW-W 789 A.C1730 A.G1748 C-G WC 19-XIX cWW cW-W 790 A.C1731 A.G1747 C-G WC 19-XIX cWW cW-W 791 A.G1732 A.A1746 G-A Sheared 11-XI tSH tm-M 792 A.A1734 A.A1743 A+A -- 02-II tHH tM+M 793 A.A1735 A.G1742 A-G Sheared 11-XI tHS tM-m 794 A.C1736 A.G1741 C-G WC 19-XIX cWW cW-W 795 A.U1737 A.G1740 U+G -- -- t.W t.+W 796 A.U1738 A.A1858 U-A WC 20-XX cWW cW-W 797 A.G1752 A.C1780 G-C WC 19-XIX cWW cW-W 798 A.C1753 A.G1779 C-G WC 19-XIX cWW cW-W 799 A.U1754 A.A1778 U-A WC 20-XX cWW cW-W 800 A.U1754 A.G2884 U-G -- -- cSS cm-m 801 A.C1755 A.G1777 C-G WC 19-XIX cWW cW-W 802 A.U1756 A.A1776 U-A WC 20-XX cWW cW-W 803 A.G1757 A.G1775 G-G -- -- tHW tM-W 804 A.U1759 A.A1774 U-A -- -- tWH tW-M 805 A.A1760 A.G1773 A-G Sheared 11-XI tHS tM-m 806 A.G1761 A.C1772 G-C WC 19-XIX cWW cW-W 807 A.G1762 A.C1771 G-C WC 19-XIX cWW cW-W 808 A.G1763 A.C1770 G-C WC 19-XIX cWW cW-W 809 A.U1764 A.G1769 U-G Wobble 28-XXVIII cWW cW-W 810 A.G1765 A.A1768 G-A Sheared 11-XI tSH tm-M 811 A.G1779 A.A2885 G+A Linker -- tSW tm+W 812 A.C1781 A.G1785 C-G WC 19-XIX cWW cW-W 813 A.C1783 A.U2745 C-U -- -- cWS cW-m 814 A.A1784 A.G2723 A+G -- 10-X tWS tW+m 815 A.G1793 A.C2017 G-C WC 19-XIX cWW cW-W 816 A.C1794 A.G2016 C-G WC 19-XIX cWW cW-W 817 A.C1795 A.G2015 C-G WC 19-XIX cWW cW-W 818 A.C1796 A.G2014 C-G WC 19-XIX cWW cW-W 819 A.A1797 A.U2013 A-U WC 20-XX cWW cW-W 820 A.G1798 A.C2012 G-C WC 19-XIX cWW cW-W 821 A.G1799 A.U2011 G-U Wobble 28-XXVIII cWW cW-W 822 A.C1800 A.G2009 C-G WC 19-XIX cWW cW-W 823 A.G1801 A.C2005 G-C -- -- .HW .M-W 824 A.G1801 A.C2008 G-C WC 19-XIX cWW cW-W 825 A.A1802 A.A2006 A+A -- -- tSW tm+W 826 A.C1803 A.C1819 C-C -- -- tHW tM-W 827 A.G1805 A.C1817 G-C WC 19-XIX cWW cW-W 828 A.U1806 A.A1816 U-A WC 20-XX cWW cW-W 829 A.U1807 A.A1814 U-A rHoogsteen 24-XXIV tWH tW-M 830 A.U1808 A.A1813 U+A -- -- tHH tM+M 831 A.C1811 A.C2615 C+C -- -- tWW tW+W 832 A.A1812 A.G2636 A-G -- -- cSS cm-m 833 A.A1820 A.G1857 A-G Sheared 11-XI tHS tM-m 834 A.G1821 A.U1856 G-U Wobble 28-XXVIII cWW cW-W 835 A.G1822 A.C1855 G-C WC 19-XIX cWW cW-W 836 A.U1823 A.G1854 U-G Wobble 28-XXVIII cWW cW-W 837 A.C1824 A.G1853 C-G WC 19-XIX cWW cW-W 838 A.U1825 A.G1852 U-G Wobble 28-XXVIII cWW cW-W 839 A.C1826 A.G1851 C-G WC 19-XIX cWW cW-W 840 A.U1827 A.A1850 U-A WC 20-XX cWW cW-W 841 A.C1829 A.G1846 C+G rWC 22-XXII tWW tW+W 842 A.A1831 A.A1844 A+A -- -- tHH tM+M 843 A.A1832 A.G1843 A-G Sheared 11-XI tHS tM-m 844 A.G1833 A.C1842 G-C WC 19-XIX cWW cW-W 845 A.C1834 A.G1841 C-G WC 19-XIX cWW cW-W 846 A.C1835 A.G1840 C-G WC 19-XIX cWW cW-W 847 A.G1836 A.A1839 G-A Sheared 11-XI tSH tm-M 848 A.C1867 A.G1871 C+G -- -- cWH cW+M 849 A.C1867 A.U1927 C-U -- -- cHH cM-M 850 A.C1872 A.G1926 C-G WC 19-XIX cWW cW-W 851 A.C1872 A.U1927 C-U -- 18-XVIII cWW cW-W 852 A.U1873 A.A1925 U-A WC 20-XX cWW cW-W 853 A.G1874 A.C1924 G-C -- -- cWW cW-W 854 A.G1874 A.A1925 G-A -- -- cWW cW-W 855 A.G1875 A.C1924 G-C WC 19-XIX cWW cW-W 856 A.A1876 A.C1922 A-C -- -- cHW cM-W 857 A.A1877 A.C1922 A-C -- -- cWW cW-W 858 A.G1878 A.C1921 G-C -- -- cWW cW-W 859 A.G1879 A.C1921 G-C WC 19-XIX cWW cW-W 860 A.U1880 A.G1920 U-G Wobble 28-XXVIII cWW cW-W 861 A.A1883 A.G1917 A-G -- -- tHS tM-m 862 A.G1884 A.U1916 G-U Wobble 28-XXVIII cWW cW-W 863 A.A1885 A.U1915 A-U WC 20-XX cWW cW-W 864 A.G1886 A.A1914 G-A -- -- .SH .m-M 865 A.G1887 A.A1913 G-A -- -- tSH tm-M 866 A.A1888 A.G1912 A-G Sheared 11-XI tHS tM-m 867 A.G1889 A.G1912 G-G ~Sheared -- tHS tM-m 868 A.C1890 A.C1911 C-C -- -- cWW cW-W 869 A.C2005 A.A2007 C+A -- -- cWH cW+M 870 A.G2021 A.C2025 G-C -- -- cWW cW-W 871 A.A2042 A.U2642 A+U rWC 21-XXI tWW tW+W 872 A.U2048 A.G2064 U-G -- -- cWW cW-W 873 A.A2049 A.U2063 A-U WC 20-XX cWW cW-W 874 A.A2052 A.U2069 A-U WC 20-XX cWW cW-W 875 A.C2053 A.G2068 C-G WC 19-XIX cWW cW-W 876 A.C2054 A.G2067 C-G WC 19-XIX cWW cW-W 877 A.U2055 A.A2066 U-A WC 20-XX cWW cW-W 878 A.G2056 A.C2065 G-C WC 19-XIX cWW cW-W 879 A.U2057 A.A2062 U-A rHoogsteen 24-XXIV tWH tW-M 880 A.C2072 A.G2654 C-G WC 19-XIX cWW cW-W 881 A.C2073 A.G2653 C-G WC 19-XIX cWW cW-W 882 A.C2074 A.G2652 C-G WC 19-XIX cWW cW-W 883 A.G2075 A.C2651 G-C WC 19-XIX cWW cW-W 884 A.C2076 A.G2650 C-G WC 19-XIX cWW cW-W 885 A.C2076 A.A2848 C-A -- -- cSW cm-W 886 A.G2077 A.C2649 G-C WC 19-XIX cWW cW-W 887 A.A2078 A.U2648 A-U WC 20-XX cWW cW-W 888 A.C2079 A.G2647 C-G WC 19-XIX cWW cW-W 889 A.G2081 A.C2646 G-C WC 19-XIX cWW cW-W 890 A.G2082 A.C2645 G-C WC 19-XIX cWW cW-W 891 A.A2083 A.U2644 A-U WC 20-XX cWW cW-W 892 A.G2085 A.C2641 G-C WC 19-XIX cWW cW-W 893 A.G2086 A.C2640 G-C WC 19-XIX cWW cW-W 894 A.G2098 A.C2471 G-C WC 19-XIX cWW cW-W 895 A.G2099 A.C2470 G-C WC 19-XIX cWW cW-W 896 A.A2100 A.U2467 A-U WC 20-XX cWW cW-W 897 A.G2101 A.G2465 G-G -- -- cWW cW-W 898 A.G2101 A.C2466 G-C WC 19-XIX cWW cW-W 899 A.C2102 A.A2464 C-A -- -- cWW cW-W 900 A.C2102 A.G2465 C-G WC 19-XIX cWW cW-W 901 A.U2103 A.A2464 U-A WC 20-XX cWW cW-W 902 A.A2106 A.U2272 A-U WC 20-XX cWW cW-W 903 A.C2107 A.G2271 C-G WC 19-XIX cWW cW-W 904 A.U2108 A.A2270 U-A WC 20-XX cWW cW-W 905 A.G2109 A.C2269 G-C WC 19-XIX cWW cW-W 906 A.C2110 A.G2268 C-G WC 19-XIX cWW cW-W 907 A.G2112 A.U2265 G-U ~Sheared -- tHS tM-m 908 A.G2112 A.G2266 G-G ~Sheared -- tHS tM-m 909 A.C2113 A.G2264 C-G WC 19-XIX cWW cW-W 910 A.C2114 A.G2263 C-G WC 19-XIX cWW cW-W 911 A.G2116 A.C2261 G-C WC 19-XIX cWW cW-W 912 A.A2117 A.U2260 A-U WC 20-XX cWW cW-W 913 A.U2118 A.G2259 U-G Wobble 28-XXVIII cWW cW-W 914 A.A2119 A.U2258 A-U WC 20-XX cWW cW-W 915 A.U2120 A.G2257 U-G Wobble 28-XXVIII cWW cW-W 916 A.G2122 A.C2225 G-C WC 19-XIX cWW cW-W 917 A.A2123 A.U2224 A-U -- -- .WS .W-m 918 A.A2124 A.U2223 A-U WC 20-XX cWW cW-W 919 A.A2124 A.U2224 A-U -- -- cWS cW-m 920 A.U2125 A.C2222 U-C -- 18-XVIII cWW cW-W 921 A.G2126 A.C2221 G-C WC 19-XIX cWW cW-W 922 A.U2127 A.A2220 U-A WC 20-XX cWW cW-W 923 A.U2128 A.G2219 U-G -- -- cWW cW-W 924 A.G2129 A.U2218 G-U -- -- cWW cW-W 925 A.G2130 A.U2217 G-U Wobble 28-XXVIII cWW cW-W 926 A.U2131 A.A2216 U-A WC 20-XX cWW cW-W 927 A.A2132 A.U2215 A-U WC 20-XX cWW cW-W 928 A.C2133 A.G2214 C-G WC 19-XIX cWW cW-W 929 A.A2134 A.U2213 A-U WC 20-XX cWW cW-W 930 A.G2135 A.C2212 G-C WC 19-XIX cWW cW-W 931 A.C2136 A.G2211 C-G WC 19-XIX cWW cW-W 932 A.U2137 A.G2210 U-G Wobble 28-XXVIII cWW cW-W 933 A.U2138 A.U2209 U-U -- -- cWW cW-W 934 A.G2139 A.C2208 G-C WC 19-XIX cWW cW-W 935 A.U2140 A.G2171 U+G -- -- cHW cM+W 936 A.A2143 A.A2200 A+A -- -- tSW tm+W 937 A.U2147 A.A2176 U+A -- -- tWS tW+m 938 A.G2149 A.C2207 G-C WC 19-XIX cWW cW-W 939 A.G2150 A.C2206 G-C WC 19-XIX cWW cW-W 940 A.U2151 A.A2205 U-A WC 20-XX cWW cW-W 941 A.G2156 A.C2190 G-C WC 19-XIX cWW cW-W 942 A.G2156 A.A2191 G-A -- -- cWS cW-m 943 A.C2157 A.G2189 C-G WC 19-XIX cWW cW-W 944 A.C2158 A.G2188 C-G ~Sheared -- tSH tm-M 945 A.U2159 A.A2187 U-A -- -- .SH .m-M 946 A.U2160 A.G2186 U-G -- -- .SW .m-W 947 A.G2161 A.G2168 G+G -- -- cHS cM+m 948 A.G2162 A.A2165 G-A -- -- cHH cM-M 949 A.G2162 A.G2183 G+G -- -- tWS tW+m 950 A.A2164 A.G2185 A-G Sheared 11-XI tHS tM-m 951 A.A2165 A.G2185 A-G -- -- cHS cM-m 952 A.C2167 A.G2182 C-G -- -- cWW cW-W 953 A.G2168 A.C2181 G-C WC 19-XIX cWW cW-W 954 A.G2169 A.U2179 G-U sWobble -- cWW cW-W 955 A.G2169 A.U2180 G-U -- -- cWW cW-W 956 A.A2170 A.C2178 A-C -- -- ..W ..-W 957 A.A2170 A.U2179 A-U -- -- cWW cW-W 958 A.G2171 A.G2177 G-G -- -- cWW cW-W 959 A.G2171 A.C2178 G-C WC 19-XIX cWW cW-W 960 A.C2172 A.G2177 C-G WC 19-XIX cWW cW-W 961 A.G2173 A.A2176 G-A -- -- tSH tm-M 962 A.G2198 A.G2199 G-G Platform -- cSW cm-W 963 A.U2226 A.A2254 U-A rHoogsteen 24-XXIV tWH tW-M 964 A.A2228 A.G2253 A-G Sheared 11-XI tHS tM-m 965 A.C2229 A.A2252 C-A -- -- cWW cW-W 966 A.C2230 A.G2251 C-G WC 19-XIX cWW cW-W 967 A.C2231 A.G2250 C-G WC 19-XIX cWW cW-W 968 A.C2233 A.G2249 C-G WC 19-XIX cWW cW-W 969 A.C2234 A.G2248 C-G WC 19-XIX cWW cW-W 970 A.G2235 A.C2247 G-C WC 19-XIX cWW cW-W 971 A.C2236 A.G2246 C-G WC 19-XIX cWW cW-W 972 A.C2237 A.G2245 C-G WC 19-XIX cWW cW-W 973 A.C2238 A.G2244 C-G WC 19-XIX cWW cW-W 974 A.U2239 A.G2244 U+G rWobble 27-XXVII tWW tW+W 975 A.C2289 A.G2309 C-G WC 19-XIX cWW cW-W 976 A.C2290 A.G2308 C-G WC 19-XIX cWW cW-W 977 A.A2295 A.U2301 A-U -- -- cWS cW-m 978 A.G2305 A.G2306 G+G Platform -- cSH cm+M 979 A.G2308 A.U2416 G+U -- -- tSW tm+W 980 A.A2315 A.A2317 A+A -- -- cSH cm+M 981 A.U2320 A.G2370 U+G -- -- .WH .W+M 982 A.U2320 A.C2371 U-C -- -- cWW cW-W 983 A.U2321 A.G2370 U+G ~Hoogsteen -- cWH cW+M 984 A.C2322 A.A2369 C-A -- -- cWW cW-W 985 A.C2323 A.G2368 C+G -- -- .WW .W+W 986 A.C2324 A.G2366 C-G WC 19-XIX cWW cW-W 987 A.C2324 A.G2367 C-G -- -- cWW cW-W 988 A.C2326 A.G2350 C-G ~Wobble -- cWW cW-W 989 A.A2327 A.C2346 A-C -- -- tHW tM-W 990 A.A2327 A.G2350 A-G Sheared 11-XI tSH tm-M 991 A.A2329 A.U2344 A-U WC 20-XX cWW cW-W 992 A.A2330 A.A2343 A-A -- -- tHW tM-W 993 A.U2331 A.G2332 U+G Platform -- cWH cW+M 994 A.U2331 A.A2343 U-A WC 20-XX cWW cW-W 995 A.G2347 A.G2350 G-G -- -- tWH tW-M 996 A.U2355 A.C2414 U-C -- -- tWH tW-M 997 A.A2357 A.G2359 A-G -- -- cHH cM-M 998 A.A2358 A.C2361 A-C -- -- cWW cW-W 999 A.C2361 A.A2365 C-A -- -- .HW .M-W 1000 A.A2375 A.G2412 A-G Sheared 11-XI .HS .M-m 1001 A.C2376 A.G2399 C-G WC 19-XIX cWW cW-W 1002 A.U2377 A.A2398 U-A WC 20-XX cWW cW-W 1003 A.C2379 A.G2396 C-G WC 19-XIX cWW cW-W 1004 A.C2379 A.C2397 C-C -- -- cWW cW-W 1005 A.A2383 A.U2392 A-U WC 20-XX cWW cW-W 1006 A.A2383 A.C2393 A-C -- -- cWW cW-W 1007 A.C2384 A.G2391 C-G WC 19-XIX cWW cW-W 1008 A.C2384 A.U2392 C-U -- 18-XVIII cWW cW-W 1009 A.C2385 A.A2390 C-A -- -- .WW .W-W 1010 A.C2414 A.U2416 C+U -- -- cWH cW+M 1011 A.G2425 A.G2450 G+G -- 06-VI cWH cW+M 1012 A.G2426 A.U2427 G+U Platform -- cSH cm+M 1013 A.G2426 A.C2449 G-C -- -- tWH tW-M 1014 A.U2427 A.U2448 U-U -- 16-XVI cWW cW-W 1015 A.U2427 A.C2449 U-C -- -- cWH cW-M 1016 A.G2429 A.A2447 G-A -- -- cWW cW-W 1017 A.U2430 A.C2446 U-C -- 18-XVIII cWW cW-W 1018 A.C2432 A.G2443 C-G WC 19-XIX cWW cW-W 1019 A.C2433 A.G2442 C-G WC 19-XIX cWW cW-W 1020 A.G2434 A.A2441 G-A Sheared 11-XI tSH tm-M 1021 A.A2464 A.A2627 A+A -- -- tSS tm+m 1022 A.U2489 A.G2523 U+G -- -- tSW tm+W 1023 A.C2490 A.G2519 C-G WC 19-XIX cWW cW-W 1024 A.U2491 A.G2518 U-G -- -- cWW cW-W 1025 A.C2493 A.A2517 C-A ~Wobble -- cWW cW-W 1026 A.C2494 A.G2516 C-G WC 19-XIX cWW cW-W 1027 A.C2494 A.A2517 C-A -- -- cWW cW-W 1028 A.C2496 A.G2514 C+G -- -- cWH cW+M 1029 A.A2497 A.G2514 A+G -- 09-IX cWH cW+M 1030 A.C2536 A.G2582 C+G -- -- tWW tW+W 1031 A.A2542 A.U2600 A-U WC 20-XX cWW cW-W 1032 A.U2543 A.G2599 U-G Wobble 28-XXVIII cWW cW-W 1033 A.C2544 A.G2598 C-G WC 19-XIX cWW cW-W 1034 A.G2545 A.C2597 G-C WC 19-XIX cWW cW-W 1035 A.C2546 A.G2596 C-G WC 19-XIX cWW cW-W 1036 A.U2548 A.C2550 U+C -- -- c.H c.+M 1037 A.C2549 A.A2571 C-A -- -- tHW tM-W 1038 A.C2549 A.G2574 C-G WC 19-XIX cWW cW-W 1039 A.C2550 A.G2573 C-G WC 19-XIX cWW cW-W 1040 A.U2551 A.G2572 U-G Wobble 28-XXVIII cWW cW-W 1041 A.G2552 A.C2569 G-C WC 19-XIX cWW cW-W 1042 A.G2553 A.C2568 G-C WC 19-XIX cWW cW-W 1043 A.G2554 A.C2567 G-C WC 19-XIX cWW cW-W 1044 A.G2555 A.U2566 G-U Wobble 28-XXVIII cWW cW-W 1045 A.C2556 A.G2565 C-G WC 19-XIX cWW cW-W 1046 A.U2557 A.G2564 U-G -- -- cWW cW-W 1047 A.A2560 A.C2687 A-C -- -- cWS cW-m 1048 A.A2560 A.A2691 A+A -- -- tWW tW+W 1049 A.A2560 A.G2692 A+G -- -- tWS tW+m 1050 A.A2570 A.A2794 A-A -- -- cSW cm-W 1051 A.U2575 A.A2594 U+A -- -- tSW tm+W 1052 A.U2575 A.G2596 U+G -- -- cWH cW+M 1053 A.U2576 A.A2590 U-A WC 20-XX cWW cW-W 1054 A.G2577 A.C2589 G-C WC 19-XIX cWW cW-W 1055 A.G2578 A.C2588 G-C WC 19-XIX cWW cW-W 1056 A.G2579 A.C2587 G-C WC 19-XIX cWW cW-W 1057 A.C2580 A.G2586 C-G WC 19-XIX cWW cW-W 1058 A.U2581 A.C2585 U-C -- -- tWH tW-M 1059 A.U2591 A.A2595 U-A rHoogsteen 24-XXIV tWH tW-M 1060 A.G2617 A.C2635 G-C WC 19-XIX cWW cW-W 1061 A.A2618 A.U2634 A-U WC 20-XX cWW cW-W 1062 A.A2619 A.U2633 A-U WC 20-XX cWW cW-W 1063 A.C2620 A.G2632 C-G WC 19-XIX cWW cW-W 1064 A.G2621 A.C2630 G-C WC 19-XIX cWW cW-W 1065 A.U2622 A.A2629 U-A WC 20-XX cWW cW-W 1066 A.C2623 A.G2628 C-G WC 19-XIX cWW cW-W 1067 A.A2643 A.U2644 A+U Platform -- cSH cm+M 1068 A.C2655 A.G2806 C-G WC 19-XIX cWW cW-W 1069 A.G2656 A.A2810 G+A Linker -- tS. tm+. 1070 A.G2659 A.C2817 G-C WC 19-XIX cWW cW-W 1071 A.G2660 A.C2816 G-C WC 19-XIX cWW cW-W 1072 A.G2660 A.A2835 G+A Linker -- tSS tm+m 1073 A.A2661 A.U2815 A-U WC 20-XX cWW cW-W 1074 A.A2662 A.U2814 A-U WC 20-XX cWW cW-W 1075 A.A2663 A.U2813 A-U WC 20-XX cWW cW-W 1076 A.U2664 A.A2812 U-A WC 20-XX cWW cW-W 1077 A.U2665 A.G2811 U-G Wobble 28-XXVIII cWW cW-W 1078 A.U2666 A.A2805 U-A rHoogsteen 24-XXIV tWH tW-M 1079 A.G2667 A.A2807 G-A Sheared 11-XI tSH tm-M 1080 A.A2668 A.A2804 A-A ~Sheared -- tHS tM-m 1081 A.G2669 A.C2803 G-C WC 19-XIX cWW cW-W 1082 A.A2670 A.U2802 A-U WC 20-XX cWW cW-W 1083 A.G2671 A.C2801 G-C WC 19-XIX cWW cW-W 1084 A.G2672 A.C2800 G-C WC 19-XIX cWW cW-W 1085 A.C2675 A.G2703 C-G WC 19-XIX cWW cW-W 1086 A.U2676 A.G2702 U-G Wobble 28-XXVIII cWW cW-W 1087 A.G2677 A.U2701 G-U Wobble 28-XXVIII cWW cW-W 1088 A.U2678 A.A2700 U-A WC 20-XX cWW cW-W 1089 A.C2679 A.G2699 C-G WC 19-XIX cWW cW-W 1090 A.C2680 A.G2698 C-G WC 19-XIX cWW cW-W 1091 A.U2681 A.G2697 U-G -- -- cWW cW-W 1092 A.A2683 A.C2696 A+C -- -- cHW cM+W 1093 A.G2684 A.U2685 G+U Platform -- cSH cm+M 1094 A.A2686 A.G2693 A-G Sheared 11-XI tHS tM-m 1095 A.C2687 A.G2692 C-G WC 19-XIX cWW cW-W 1096 A.G2688 A.A2691 G-A Sheared 11-XI tSH tm-M 1097 A.A2704 A.G2761 A-G Imino 08-VIII cWW cW-W 1098 A.C2705 A.G2760 C-G WC 19-XIX cWW cW-W 1099 A.G2706 A.C2759 G-C WC 19-XIX cWW cW-W 1100 A.C2707 A.G2758 C-G WC 19-XIX cWW cW-W 1101 A.A2708 A.U2757 A-U WC 20-XX cWW cW-W 1102 A.C2709 A.G2756 C-G WC 19-XIX cWW cW-W 1103 A.C2710 A.A2754 C-A ~rHoogsteen 25-XXV tWH tW-M 1104 A.G2711 A.G2756 G-G -- -- cHS cM-m 1105 A.U2713 A.A2754 U-A WC 20-XX cWW cW-W 1106 A.G2714 A.U2753 G-U Wobble 28-XXVIII cWW cW-W 1107 A.G2715 A.C2752 G-C WC 19-XIX cWW cW-W 1108 A.U2716 A.G2751 U-G Wobble 28-XXVIII cWW cW-W 1109 A.G2717 A.A2750 G-A Sheared 11-XI tSH tm-M 1110 A.C2720 A.G2747 C-G WC 19-XIX cWW cW-W 1111 A.C2721 A.G2746 C-G WC 19-XIX cWW cW-W 1112 A.A2722 A.U2745 A-U WC 20-XX cWW cW-W 1113 A.G2723 A.C2744 G-C WC 19-XIX cWW cW-W 1114 A.U2724 A.G2743 U-G Wobble 28-XXVIII cWW cW-W 1115 A.U2725 A.A2740 U-A WC 20-XX cWW cW-W 1116 A.G2726 A.C2739 G-C WC 19-XIX cWW cW-W 1117 A.U2727 A.G2738 U-G Wobble 28-XXVIII cWW cW-W 1118 A.U2728 A.G2737 U-G Wobble 28-XXVIII cWW cW-W 1119 A.C2729 A.G2736 C-G WC 19-XIX cWW cW-W 1120 A.U2730 A.A2735 U-A WC 20-XX cWW cW-W 1121 A.G2748 A.G2897 G+G -- -- t.W t.+W 1122 A.U2749 A.A2898 U+A Hoogsteen 23-XXIII cWH cW+M 1123 A.C2763 A.C2799 C-C -- -- cWW cW-W 1124 A.G2764 A.C2798 G-C WC 19-XIX cWW cW-W 1125 A.G2765 A.C2797 G-C WC 19-XIX cWW cW-W 1126 A.G2766 A.C2796 G-C WC 19-XIX cWW cW-W 1127 A.A2767 A.G2795 A+G -- -- .W. .W+. 1128 A.U2768 A.A2793 U-A rHoogsteen 24-XXIV tWH tW-M 1129 A.A2770 A.G2792 A-G Sheared 11-XI tHS tM-m 1130 A.G2771 A.U2791 G-U Wobble 28-XXVIII cWW cW-W 1131 A.U2772 A.A2790 U-A WC 20-XX cWW cW-W 1132 A.G2773 A.C2789 G-C WC 19-XIX cWW cW-W 1133 A.C2774 A.G2788 C-G WC 19-XIX cWW cW-W 1134 A.U2775 A.U2785 U-U Calcutta -- tWH tW-M 1135 A.U2775 A.A2787 U-A -- -- tWH tW-M 1136 A.G2776 A.A2786 G-A Sheared 11-XI tSH tm-M 1137 A.A2777 A.U2783 A-U -- -- tHW tM-W 1138 A.A2778 A.A2782 A-A -- -- tHW tM-W 1139 A.A2779 A.C2781 A+C -- -- tSW tm+W 1140 A.U2785 A.A2787 U+A Hoogsteen 23-XXIII cWH cW+M 1141 A.G2806 A.U2808 G+U -- -- cSH cm+M 1142 A.C2818 A.G2918 C-G WC 19-XIX cWW cW-W 1143 A.U2820 A.A2831 U-A WC 20-XX cWW cW-W 1144 A.U2821 A.A2830 U-A WC 20-XX cWW cW-W 1145 A.C2822 A.G2829 C-G WC 19-XIX cWW cW-W 1146 A.C2823 A.G2828 C-G WC 19-XIX cWW cW-W 1147 A.G2824 A.A2827 G-A Sheared 11-XI tSH tm-M 1148 A.G2832 A.G2917 G-G -- -- .WH .W-M 1149 A.U2833 A.A2916 U-A rHoogsteen 24-XXIV tWH tW-M 1150 A.A2835 A.G2915 A-G Sheared 11-XI tHS tM-m 1151 A.G2836 A.C2914 G-C WC 19-XIX cWW cW-W 1152 A.A2837 A.U2913 A-U WC 20-XX cWW cW-W 1153 A.U2838 A.A2912 U-A WC 20-XX cWW cW-W 1154 A.C2839 A.G2911 C-G WC 19-XIX cWW cW-W 1155 A.C2840 A.G2856 C-G WC 19-XIX cWW cW-W 1156 A.C2841 A.G2855 C-G WC 19-XIX cWW cW-W 1157 A.U2842 A.A2854 U-A WC 20-XX cWW cW-W 1158 A.G2843 A.C2853 G-C WC 19-XIX cWW cW-W 1159 A.A2844 A.U2852 A-U WC 20-XX cWW cW-W 1160 A.A2846 A.A2851 A-A -- -- cSW cm-W 1161 A.G2855 A.A2908 G+A Linker -- tSS tm+m 1162 A.G2859 A.A2908 G-A Sheared 11-XI tSH tm-M 1163 A.A2860 A.C2905 A-C -- -- tW. tW-. 1164 A.U2861 A.A2907 U-A WC 20-XX cWW cW-W 1165 A.A2862 A.U2906 A-U WC 20-XX cWW cW-W 1166 A.G2863 A.C2905 G-C WC 19-XIX cWW cW-W 1167 A.G2864 A.U2903 G-U Wobble 28-XXVIII cWW cW-W 1168 A.U2865 A.A2902 U-A WC 20-XX cWW cW-W 1169 A.C2866 A.G2901 C-G WC 19-XIX cWW cW-W 1170 A.U2867 A.A2900 U-A WC 20-XX cWW cW-W 1171 A.G2868 A.C2899 G-C WC 19-XIX cWW cW-W 1172 A.G2870 A.U2896 G-U Wobble 28-XXVIII cWW cW-W 1173 A.G2871 A.C2895 G-C WC 19-XIX cWW cW-W 1174 A.U2872 A.G2894 U-G Wobble 28-XXVIII cWW cW-W 1175 A.G2873 A.A2893 G-A Sheared 11-XI tSH tm-M 1176 A.G2874 A.G2891 G+G -- 04-IV tSS tm+m 1177 A.A2875 A.A2893 A-A -- -- tHS tM-m 1178 A.A2876 A.G2891 A+G -- -- .HH .M+M 1179 A.G2877 A.U2890 G-U Wobble 28-XXVIII cWW cW-W 1180 A.U2878 A.A2889 U-A WC 20-XX cWW cW-W 1181 A.U2878 A.U2890 U-U -- -- cWW cW-W 1182 A.G2879 A.C2888 G-C WC 19-XIX cWW cW-W 1183 A.U2880 A.A2887 U-A WC 20-XX cWW cW-W 1184 A.G2881 A.C2886 G-C WC 19-XIX cWW cW-W 1185 A.G2882 A.A2885 G-A -- -- tSH tm-M 1186 B.U3 B.A113 U-A WC 20-XX cWW cW-W 1187 B.G4 B.C112 G-C WC 19-XIX cWW cW-W 1188 B.G5 B.C111 G-C WC 19-XIX cWW cW-W 1189 B.U6 B.G110 U-G Wobble 28-XXVIII cWW cW-W 1190 B.U6 B.C111 U-C -- 18-XVIII cWW cW-W 1191 B.G7 B.C109 G-C WC 19-XIX cWW cW-W 1192 B.G8 B.C108 G-C WC 19-XIX cWW cW-W 1193 B.C9 B.G107 C-G WC 19-XIX cWW cW-W 1194 B.G14 B.C66 G-C WC 19-XIX cWW cW-W 1195 B.C15 B.G65 C-G WC 19-XIX cWW cW-W 1196 B.G16 B.C63 G-C WC 19-XIX cWW cW-W 1197 B.G16 B.C106 G+C -- -- tWW tW+W 1198 B.A17 B.U62 A-U WC 20-XX cWW cW-W 1199 B.A18 B.U61 A-U WC 20-XX cWW cW-W 1200 B.G19 B.C60 G-C WC 19-XIX cWW cW-W 1201 B.A20 B.U59 A-U WC 20-XX cWW cW-W 1202 B.G21 B.C58 G-C WC 19-XIX cWW cW-W 1203 B.G22 B.G57 G-G -- -- cW. cW-. 1204 B.C26 B.U54 C-U -- -- cWW cW-W 1205 B.A27 B.U53 A-U WC 20-XX cWW cW-W 1206 B.A27 B.A56 A-A -- -- cSW cm-W 1207 B.C28 B.G52 C-G -- -- cWW cW-W 1208 B.C28 B.U53 C-U -- -- cWW cW-W 1209 B.C28 B.A55 C-A -- -- cSW cm-W 1210 B.C29 B.G49 C-G WC 19-XIX cWW cW-W 1211 B.C29 B.A51 C-A -- -- cSW cm-W 1212 B.C30 B.G48 C-G WC 19-XIX cWW cW-W 1213 B.G31 B.U33 G+U -- -- cSH cm+M 1214 B.C34 B.C45 C+C -- -- tHH tM+M 1215 B.C36 B.G42 C-G WC 19-XIX cWW cW-W 1216 B.A37 B.A39 A-A -- -- cWW cW-W 1217 B.U38 B.C45 U-C -- -- tHW tM-W 1218 B.C40 B.A44 C-A -- -- tSW tm-W 1219 B.G42 B.C45 G-C -- -- cSW cm-W 1220 B.G49 B.A51 G+A -- -- cSH cm+M 1221 B.A50 B.G52 A+G -- -- cWH cW+M 1222 B.U53 B.A55 U+A -- -- cSH cm+M 1223 B.U54 B.A56 U+A -- -- cWH cW+M 1224 B.U54 B.G57 U+G -- -- .WH .W+M 1225 B.G65 B.C106 G-C ~rHoogsteen -- tHW tM-W 1226 B.C68 B.G104 C-G WC 19-XIX cWW cW-W 1227 B.C69 B.G103 C-G WC 19-XIX cWW cW-W 1228 B.G70 B.A102 G-A Sheared 11-XI tSH tm-M 1229 B.A71 B.U101 A-U rHoogsteen 24-XXIV tHW tM-W 1230 B.U72 B.G100 U-G -- -- c.W c.-W 1231 B.U72 B.U101 U-U -- -- cHW cM-W 1232 B.G73 B.A99 G-A -- -- cWW cW-W 1233 B.G74 B.G98 G-G -- -- tWH tW-M 1234 B.U75 B.A97 U-A rHoogsteen 24-XXIV tWH tW-M 1235 B.A76 B.G96 A-G Sheared 11-XI tHS tM-m 1236 B.G77 B.U95 G-U -- -- cWW cW-W 1237 B.U78 B.G94 U-G Wobble 28-XXVIII cWW cW-W 1238 B.C79 B.U93 C-U -- 18-XVIII cWW cW-W 1239 B.G80 B.C92 G-C WC 19-XIX cWW cW-W 1240 B.G81 B.C91 G-C WC 19-XIX cWW cW-W 1241 B.G82 B.C90 G-C WC 19-XIX cWW cW-W 1242 B.G83 B.C89 G-C WC 19-XIX cWW cW-W 1243 B.G84 B.C88 G-C WC 19-XIX cWW cW-W **************************************************************************** List of 118 multiplets 1 nts=3 GCA A.G35,A.C492,A.A496 2 nts=3 CGA A.C39,A.G487,A.A659 3 nts=3 AUC A.A44,A.U481,A.C482 4 nts=3 GAC A.G45,A.A183,A.C480 5 nts=3* GAU A.G51,A.A117,A.U119 6 nts=3 GCA A.G55,A.C114,A.A126 7 nts=3 GCA A.G58,A.C69,A.A73 8 nts=3 GCG A.G60,A.C66,A.G88 9 nts=3 AUC A.A65,A.U89,A.C503 10 nts=3 GCA A.G80,A.C105,A.A337 11 nts=3 AGU A.A193,A.G208,A.U209 12 nts=3 AAU A.A229,A.A456,A.U465 13 nts=3 AGC A.A230,A.G457,A.C464 14 nts=3 AUA A.A236,A.U266,A.A476 15 nts=3 GUA A.G245,A.U246,A.A258 16 nts=3 UAU A.U299,A.A302,A.U416 17 nts=3 GGC A.G304,A.G411,A.C414 18 nts=3 CGA A.C306,A.G410,A.A412 19 nts=3 AAU A.A318,A.A325,A.U402 20 nts=3 GAC A.G319,A.A326,A.C401 21 nts=3 UGU A.U320,A.G327,A.U400 22 nts=3 AGG A.A342,A.G368,A.G382 23 nts=3 AUU A.A428,A.U434,A.U440 24 nts=3 ACG A.A490,A.C1241,A.G1285 25 nts=3 UGC A.U495,A.G626,A.C1298 26 nts=3 GAA A.G499,A.A504,A.A518 27 nts=3 GUA A.G505,A.U506,A.A517 28 nts=3 GUA A.G512,A.U730,A.A841 29 nts=3 CAA A.C529,A.A530,A.A543 30 nts=3 ACG A.A572,A.C2072,A.G2654 31 nts=3 AAU A.A578,A.A2049,A.U2063 32 nts=3 CGA A.C588,A.G595,A.A1260 33 nts=3 UUA A.U606,A.U2057,A.A2062 34 nts=3 ACG A.A630,A.C718,A.G856 35 nts=3 UGG A.U650,A.G666,A.G668 36 nts=3 AUA A.A689,A.U2377,A.A2398 37 nts=3 AUC A.A722,A.U850,A.C2472 38 nts=3 GGC A.G731,A.G822,A.C838 39 nts=3 GCC A.G776,A.C1803,A.C1819 40 nts=3 CGA A.C785,A.G805,A.A2010 41 nts=3 ACG A.A786,A.C787,A.G804 42 nts=3 CAG A.C791,A.A796,A.G800 43 nts=3 UAA A.U794,A.A1305,A.A2043 44 nts=3 AUA A.A811,A.U1804,A.A1818 45 nts=3 AGC A.A821,A.G824,A.C834 46 nts=3 AGC A.A828,A.G1805,A.C1817 47 nts=3 GCA A.G871,A.C880,A.A2387 48 nts=3 UAU A.U892,A.A894,A.U979 49 nts=3 UAA A.U907,A.A964,A.A2297 50 nts=3 CUA A.C912,A.U915,A.A956 51 nts=3 AUG A.A993,A.U1016,A.G1030 52 nts=3 GUA A.G1000,A.U1009,A.A2303 53 nts=3 GAC A.G1048,A.A1055,A.C1199 54 nts=3 GAC A.G1049,A.A1056,A.C1198 55 nts=3 CCG A.C1051,A.C1181,A.G1184 56 nts=3 GGA A.G1071,A.G1185,A.A1189 57 nts=3 UAC A.U1079,A.A2779,A.C2781 58 nts=3 GCU A.G1309,A.C1364,A.U2040 59 nts=3 CGA A.C1353,A.G1377,A.A1432 60 nts=3 CGG A.C1354,A.G1376,A.G1431 61 nts=3 GAC A.G1358,A.A1361,A.C1372 62 nts=3 GGC A.G1359,A.G1362,A.C1370 63 nts=3 AUA A.A1398,A.U1411,A.A2241 64 nts=3 AGA A.A1456,A.G1460,A.A1631 65 nts=3 ACU A.A1477,A.C1607,A.U1610 66 nts=3 AUA A.A1675,A.U1681,A.A1789 67 nts=3 AGC A.A1709,A.G2021,A.C2025 68 nts=3 GAU A.G1712,A.A1714,A.U2022 69 nts=3 ACU A.A1713,A.C1715,A.U2020 70 nts=3 GAC A.G1719,A.A1722,A.C2019 71 nts=3 UAG A.U1754,A.A1778,A.G2884 72 nts=3 CAU A.C1783,A.A2722,A.U2745 73 nts=3 AGC A.A1784,A.G2723,A.C2744 74 nts=3 GCC A.G1801,A.C2005,A.C2008 75 nts=3 CCU A.C1867,A.C1872,A.U1927 76 nts=3 CGA A.C2076,A.G2650,A.A2848 77 nts=3 AAU A.A2083,A.A2643,A.U2644 78 nts=3 UAA A.U2103,A.A2464,A.A2627 79 nts=3 AUU A.A2124,A.U2223,A.U2224 80 nts=3 UGA A.U2147,A.G2173,A.A2176 81 nts=3 GGC A.G2161,A.G2168,A.C2181 82 nts=3 UGA A.U2331,A.G2332,A.A2343 83 nts=3 CAG A.C2549,A.A2571,A.G2574 84 nts=3 ACG A.A2560,A.C2687,A.G2692 85 nts=3 CGU A.C2655,A.G2806,A.U2808 86 nts=3 CGG A.C2709,A.G2711,A.G2756 87 nts=3 CUA A.C2710,A.U2713,A.A2754 88 nts=3 UUA A.U2775,A.U2785,A.A2787 89 nts=3 GAA A.G2873,A.A2875,A.A2893 90 nts=3 GAG A.G2874,A.A2876,A.G2891 91 nts=3 CGC B.C15,B.G65,B.C106 92 nts=3 CUG B.C26,B.U54,B.G57 93 nts=3 AUA B.A27,B.U53,B.A56 94 nts=3 CUA B.C28,B.U53,B.A55 95 nts=3 CGA B.C29,B.G49,B.A51 96 nts=4 GGCA A.G83,A.G85,A.C97,A.A102 97 nts=4 AUCG A.A162,A.U167,A.C2236,A.G2246 98 nts=4 AUGC A.A274,A.U298,A.G303,A.C415 99 nts=4 GAGC A.G510,A.A513,A.G729,A.C842 100 nts=4 UAUA A.U522,A.A526,A.U545,A.A549 101 nts=4 GCGA A.G629,A.C719,A.G855,A.A1294 102 nts=4 AAGC A.A723,A.A849,A.G2098,A.C2471 103 nts=4 GACC A.G911,A.A913,A.C914,A.C959 104 nts=4 GACU A.G911,A.A913,A.C914,A.U960 105 nts=4 GCUA A.G1022,A.C1033,A.U1045,A.A1201 106 nts=4 GCAG A.G1023,A.C1032,A.A1047,A.G1200 107 nts=4 GUAU A.G1306,A.U1307,A.A2042,A.U2642 108 nts=4 CGCA A.C1390,A.G1419,A.C1474,A.A1618 109 nts=4 GUAC A.G1482,A.U1522,A.A1562,A.C1604 110 nts=4 GCGA A.G1492,A.C1511,A.G1574,A.A1593 111 nts=4 CGGA A.C1753,A.G1779,A.G2882,A.A2885 112 nts=4 ACGG A.A2327,A.C2346,A.G2347,A.G2350 113 nts=4 GUUC A.G2426,A.U2427,A.U2448,A.C2449 114 nts=4 ACGA A.A2560,A.C2687,A.G2688,A.A2691 115 nts=4 GCAG A.G2660,A.C2816,A.A2835,A.G2915 116 nts=4 CGGA A.C2841,A.G2855,A.G2859,A.A2908 117 nts=5 CGUCU A.C2290,A.G2308,A.U2355,A.C2414,A.U2416 118 nts=5 CCUGC B.C34,B.C36,B.U38,B.G42,B.C45 **************************************************************************** List of 88 helices Note: A helix is defined by base-stacking interactions, regardless of pair type and backbone connectivity, and may contain more than one stem. helix#number[stems-contained] bps=number-of-base-pairs in the helix bp-type: '|' for a canonical WC/wobble pair, '.' otherwise helix-form: classification of a dinucleotide step comprising the bp above the given designation and the bp that follows it. Types include 'A', 'B' or 'Z' for the common A-, B- and Z-form helices, '.' for an unclassified step, and 'x' for a step without a continuous backbone. -------------------------------------------------------------------- helix#1[1] bps=7 strand-1 5'-UUAAGUU-3' bp-type ||||||. strand-2 3'-AAUUCAA-5' helix-form .AAAAx 1 A.U3 A.A2924 U-A WC 20-XX cWW cW-W 2 A.U4 A.A2923 U-A WC 20-XX cWW cW-W 3 A.A5 A.U2922 A-U WC 20-XX cWW cW-W 4 A.A6 A.U2921 A-U WC 20-XX cWW cW-W 5 A.G7 A.C2920 G-C WC 19-XIX cWW cW-W 6 A.U8 A.A2919 U-A WC 20-XX cWW cW-W 7 A.U9 A.A2658 U-A rHoogsteen 24-XXIV tWH tW-M -------------------------------------------------------------------------- helix#2[5] bps=32 strand-1 5'-AGGGCGCACGGUGGAUGCCUAGGCACUAGGAG-3' bp-type .||||||||||.....|||..||||||||||| strand-2 3'-AUCCGUGUGCCAAAGUCGGAGCCGUGAUCCUC-5' helix-form x.AA..AA.A......xAxxx.xA..AA.x. 1 A.A14 A.A13 A+A Platform -- cHS cM+m 2 A.G15 A.U571 G-U Wobble 28-XXVIII cWW cW-W 3 A.G16 A.C570 G-C WC 19-XIX cWW cW-W 4 A.G17 A.C569 G-C WC 19-XIX cWW cW-W 5 A.C18 A.G568 C-G WC 19-XIX cWW cW-W 6 A.G19 A.U567 G-U Wobble 28-XXVIII cWW cW-W 7 A.C20 A.G566 C-G WC 19-XIX cWW cW-W 8 A.A21 A.U565 A-U WC 20-XX cWW cW-W 9 A.C22 A.G564 C-G WC 19-XIX cWW cW-W 10 A.G23 A.C563 G-C WC 19-XIX cWW cW-W 11 A.G24 A.C562 G-C WC 19-XIX cWW cW-W 12 A.U25 A.A561 U-A -- -- tWH tW-M 13 A.G26 A.A560 G-A Sheared 11-XI tSH tm-M 14 A.G27 A.A559 G-A Sheared 11-XI tSH tm-M 15 A.A28 A.G558 A-G Sheared 11-XI tHS tM-m 16 A.U29 A.U557 U-U -- 16-XVI cWW cW-W 17 A.G30 A.C556 G-C WC 19-XIX cWW cW-W 18 A.C31 A.G521 C-G WC 19-XIX cWW cW-W 19 A.C32 A.G520 C-G WC 19-XIX cWW cW-W 20 A.U33 A.A494 U-A rHoogsteen 24-XXIV tWH tW-M 21 A.A501 A.G493 A+G -- 10-X tWS tW+m 22 A.G35 A.C492 G-C WC 19-XIX cWW cW-W 23 A.G36 A.C491 G-C WC 19-XIX cWW cW-W 24 A.C37 A.G489 C-G WC 19-XIX cWW cW-W 25 A.A38 A.U488 A-U WC 20-XX cWW cW-W 26 A.C39 A.G487 C-G WC 19-XIX cWW cW-W 27 A.U40 A.A486 U-A WC 20-XX cWW cW-W 28 A.A41 A.U485 A-U WC 20-XX cWW cW-W 29 A.G42 A.C484 G-C WC 19-XIX cWW cW-W 30 A.G43 A.C483 G-C WC 19-XIX cWW cW-W 31 A.A44 A.U481 A-U WC 20-XX cWW cW-W 32 A.G45 A.C480 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#3[1] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 A.C46 A.G181 C-G WC 19-XIX cWW cW-W 2 A.C47 A.G180 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#4[3] bps=14 strand-1 5'-AGAAGGACGGUGUA-3' bp-type ....|||||||||. strand-2 3'-UAAGCCUGCCACAA-5' helix-form x.x..AxA.xxA. 1 A.A49 A.U119 A+U Hoogsteen 23-XXIII cHW cM+W 2 A.G51 A.A117 G-A Sheared 11-XI tSH tm-M 3 A.A52 A.A118 A+A -- 02-II tHH tM+M 4 A.A53 A.G116 A-G Sheared 11-XI tHS tM-m 5 A.G54 A.C115 G-C WC 19-XIX cWW cW-W 6 A.G55 A.C114 G-C WC 19-XIX cWW cW-W 7 A.A56 A.U113 A-U WC 20-XX cWW cW-W 8 A.C57 A.G70 C-G WC 19-XIX cWW cW-W 9 A.G58 A.C69 G-C WC 19-XIX cWW cW-W 10 A.G59 A.C68 G-C WC 19-XIX cWW cW-W 11 A.U74 A.A67 U-A WC 20-XX cWW cW-W 12 A.G88 A.C66 G-C WC 19-XIX cWW cW-W 13 A.U89 A.A65 U-A WC 20-XX cWW cW-W 14 A.A90 A.A64 A+A -- 01-I tWW tW+W -------------------------------------------------------------------------- helix#5[1] bps=10 strand-1 5'-GCUUCGGGGA-3' bp-type .||||||... strand-2 3'-AGAGGCCUAG-5' helix-form ..AA.A... 1 A.G75 A.A110 G-A -- -- cWW cW-W 2 A.C76 A.G109 C-G WC 19-XIX cWW cW-W 3 A.U77 A.A108 U-A WC 20-XX cWW cW-W 4 A.U78 A.G107 U-G Wobble 28-XXVIII cWW cW-W 5 A.C79 A.G106 C-G WC 19-XIX cWW cW-W 6 A.G80 A.C105 G-C WC 19-XIX cWW cW-W 7 A.G81 A.C104 G-C WC 19-XIX cWW cW-W 8 A.G82 A.U103 G-U -- -- t.H t.-M 9 A.G83 A.A102 G-A Sheared 11-XI tSH tm-M 10 A.A84 A.G101 A-G Sheared 11-XI tHS tM-m -------------------------------------------------------------------------- helix#6[1] bps=5 strand-1 5'-GCUAC-3' bp-type |||.| strand-2 3'-CGACG-5' helix-form A.xA 1 A.G85 A.C97 G-C WC 19-XIX cWW cW-W 2 A.C86 A.G96 C-G WC 19-XIX cWW cW-W 3 A.U87 A.A95 U-A WC 20-XX cWW cW-W 4 A.A61 A.C93 A-C -- -- cWW cW-W 5 A.C62 A.G92 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#7[2] bps=11 strand-1 5'-CCCACCACUCG-3' bp-type ||||||||||. strand-2 3'-GGGUGGUGAGG-5' helix-form AAxAAAAAA. 1 A.C127 A.G122 C-G WC 19-XIX cWW cW-W 2 A.C128 A.G121 C-G WC 19-XIX cWW cW-W 3 A.C129 A.G120 C-G WC 19-XIX cWW cW-W 4 A.A130 A.U149 A-U WC 20-XX cWW cW-W 5 A.C131 A.G148 C-G WC 19-XIX cWW cW-W 6 A.C132 A.G147 C-G WC 19-XIX cWW cW-W 7 A.A133 A.U146 A-U WC 20-XX cWW cW-W 8 A.C134 A.G145 C-G WC 19-XIX cWW cW-W 9 A.U135 A.A144 U-A WC 20-XX cWW cW-W 10 A.C136 A.G143 C-G WC 19-XIX cWW cW-W 11 A.G137 A.G142 G-G -- -- tSH tm-M -------------------------------------------------------------------------- helix#8[1] bps=11 strand-1 5'-CCAUAUCUGAA-3' bp-type |||||||.... strand-2 3'-GGUAUAGGAUA-5' helix-form x.AAAA.... 1 A.C152 A.G177 C-G WC 19-XIX cWW cW-W 2 A.C153 A.G175 C-G WC 19-XIX cWW cW-W 3 A.A154 A.U174 A-U WC 20-XX cWW cW-W 4 A.U155 A.A173 U-A WC 20-XX cWW cW-W 5 A.A156 A.U172 A-U WC 20-XX cWW cW-W 6 A.U157 A.A171 U-A WC 20-XX cWW cW-W 7 A.C158 A.G170 C-G WC 19-XIX cWW cW-W 8 A.U159 A.G169 U-G -- -- cWW cW-W 9 A.G160 A.A168 G-A Sheared 11-XI tSH tm-M 10 A.A161 A.U167 A-U rHoogsteen 24-XXIV tHW tM-W 11 A.A162 A.A166 A-A -- -- tHW tM-W -------------------------------------------------------------------------- helix#9[1] bps=13 strand-1 5'-ACCCGGGGAACUG-3' bp-type .||||||.....| strand-2 3'-GGGGCCCAUAAUC-5' helix-form AxAAAA..x... 1 A.A185 A.G218 A-G Imino 08-VIII cWW cW-W 2 A.C186 A.G217 C-G WC 19-XIX cWW cW-W 3 A.C187 A.G215 C-G WC 19-XIX cWW cW-W 4 A.C188 A.G214 C-G WC 19-XIX cWW cW-W 5 A.G189 A.C213 G-C WC 19-XIX cWW cW-W 6 A.G190 A.C212 G-C WC 19-XIX cWW cW-W 7 A.G191 A.C211 G-C WC 19-XIX cWW cW-W 8 A.G192 A.A210 G-A Sheared 11-XI tSH tm-M 9 A.A193 A.U209 A-U rHoogsteen 24-XXIV tHW tM-W 10 A.A194 A.A207 A+A -- 02-II tHH tM+M 11 A.C195 A.A206 C-A ~Sheared -- tHS tM-m 12 A.U196 A.U205 U-U -- 16-XVI cWW cW-W 13 A.G197 A.C204 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#10[1] bps=3 strand-1 5'-AGC-3' bp-type .|| strand-2 3'-GCG-5' helix-form xA 1 A.A225 A.G235 A-G Sheared 11-XI .HS .M-m 2 A.G227 A.C234 G-C WC 19-XIX cWW cW-W 3 A.C228 A.G233 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#11[2] bps=13 strand-1 5'-AUUCCCGAUAGCG-3' bp-type ..||||....||. strand-2 3'-AAAGGGAAAGCGA-5' helix-form .xA.Ax.x..A. 1 A.A236 A.A476 A+A -- -- tWW tW+W 2 A.U237 A.A477 U+A rWC 21-XXI tWW tW+W 3 A.U238 A.A265 U-A WC 20-XX cWW cW-W 4 A.C239 A.G264 C-G WC 19-XIX cWW cW-W 5 A.C240 A.G263 C-G WC 19-XIX cWW cW-W 6 A.C241 A.G262 C-G WC 19-XIX cWW cW-W 7 A.G243 A.A260 G-A Sheared 11-XI tSH tm-M 8 A.A244 A.A259 A+A -- 02-II tHH tM+M 9 A.U246 A.A258 U-A rHoogsteen 24-XXIV tWH tW-M 10 A.A247 A.G257 A-G Sheared 11-XI tHS tM-m 11 A.G248 A.C256 G-C WC 19-XIX cWW cW-W 12 A.C249 A.G255 C-G WC 19-XIX cWW cW-W 13 A.G250 A.A254 G-A -- -- tSH tm-M -------------------------------------------------------------------------- helix#12[3] bps=15 strand-1 5'-AGCCCAACCAAGAGG-3' bp-type .||||..||||.||| strand-2 3'-ACGGGUGGGUUCUCC-5' helix-form x.AxxxxA.A.... 1 A.A268 A.A224 A+A -- -- cHW cM+W 2 A.G269 A.C473 G-C WC 19-XIX cWW cW-W 3 A.C270 A.G472 C-G WC 19-XIX cWW cW-W 4 A.C271 A.G471 C-G WC 19-XIX cWW cW-W 5 A.C272 A.G417 C-G WC 19-XIX cWW cW-W 6 A.A273 A.U298 A-U rHoogsteen 24-XXIV tHW tM-W 7 A.A275 A.G297 A-G -- -- .WS .W-m 8 A.C276 A.G295 C-G WC 19-XIX cWW cW-W 9 A.C277 A.G294 C-G WC 19-XIX cWW cW-W 10 A.A278 A.U293 A-U WC 20-XX cWW cW-W 11 A.A279 A.U292 A-U WC 20-XX cWW cW-W 12 A.G280 A.C291 G-C -- -- cWW cW-W 13 A.A281 A.U290 A-U WC 20-XX cWW cW-W 14 A.G282 A.C289 G-C WC 19-XIX cWW cW-W 15 A.G283 A.C288 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#13[3] bps=15 strand-1 5'-GGAGGGAACGAGGUA-3' bp-type |||||||||||.||. strand-2 3'-CCUCUCUUGCUUCAA-5' helix-form AAAx.AA..A..Ax 1 A.G316 A.C404 G-C WC 19-XIX cWW cW-W 2 A.G317 A.C403 G-C WC 19-XIX cWW cW-W 3 A.A318 A.U402 A-U WC 20-XX cWW cW-W 4 A.G319 A.C401 G-C WC 19-XIX cWW cW-W 5 A.G327 A.U400 G-U Wobble 28-XXVIII cWW cW-W 6 A.G328 A.C399 G-C WC 19-XIX cWW cW-W 7 A.A329 A.U398 A-U WC 20-XX cWW cW-W 8 A.A330 A.U397 A-U WC 20-XX cWW cW-W 9 A.C331 A.G396 C-G WC 19-XIX cWW cW-W 10 A.G332 A.C395 G-C WC 19-XIX cWW cW-W 11 A.A333 A.U394 A-U WC 20-XX cWW cW-W 12 A.G334 A.U393 G-U -- -- cWW cW-W 13 A.G335 A.C392 G-C WC 19-XIX cWW cW-W 14 A.U336 A.A391 U-A WC 20-XX cWW cW-W 15 A.A389 A.A390 A+A Platform -- cSH cm+M -------------------------------------------------------------------------- helix#14[2] bps=10 strand-1 5'-GAUGAGAGGU-3' bp-type |||...|||. strand-2 3'-CUGAUGUCCA-5' helix-form ....x.AAx 1 A.G338 A.C387 G-C WC 19-XIX cWW cW-W 2 A.A339 A.U386 A-U WC 20-XX cWW cW-W 3 A.U340 A.G385 U-G Wobble 28-XXVIII cWW cW-W 4 A.G341 A.A384 G-A Sheared 11-XI tSH tm-M 5 A.A342 A.U383 A-U -- -- ..W ..-W 6 A.G368 A.G382 G-G ~Sheared -- tHS tM-m 7 A.A369 A.U381 A-U WC 20-XX cWW cW-W 8 A.G370 A.C380 G-C WC 19-XIX cWW cW-W 9 A.G371 A.C379 G-C WC 19-XIX cWW cW-W 10 A.U372 A.A376 U-A rHoogsteen 24-XXIV tWH tW-M -------------------------------------------------------------------------- helix#15[2] bps=11 strand-1 5'-GGCGGGUCUGG-3' bp-type ||||||||... strand-2 3'-CCGCCCGGAAA-5' helix-form xAxxA..xx. 1 A.G367 A.C363 G-C WC 19-XIX cWW cW-W 2 A.G377 A.C362 G-C WC 19-XIX cWW cW-W 3 A.C378 A.G361 C-G WC 19-XIX cWW cW-W 4 A.G344 A.C360 G-C WC 19-XIX cWW cW-W 5 A.G346 A.C359 G-C WC 19-XIX cWW cW-W 6 A.G347 A.C358 G-C WC 19-XIX cWW cW-W 7 A.U348 A.G357 U-G Wobble 28-XXVIII cWW cW-W 8 A.C349 A.G356 C-G WC 19-XIX cWW cW-W 9 A.U350 A.A354 U-A rHoogsteen 24-XXIV tWH tW-M 10 A.G351 A.A374 G-A -- -- tSW tm-W 11 A.G352 A.A373 G+A Linker -- tSS tm+m -------------------------------------------------------------------------- helix#16[3] bps=17 strand-1 5'-UGAGUGUCCUCGGGAGA-3' bp-type .|||||||||||||||| strand-2 3'-UCUCACAGGAGCCCUCU-5' helix-form .AAAAxA..xx..AAx 1 A.U405 A.U311 U-U -- 16-XVI cWW cW-W 2 A.G406 A.C310 G-C WC 19-XIX cWW cW-W 3 A.A407 A.U309 A-U WC 20-XX cWW cW-W 4 A.G408 A.C308 G-C WC 19-XIX cWW cW-W 5 A.U409 A.A307 U-A WC 20-XX cWW cW-W 6 A.G410 A.C306 G-C WC 19-XIX cWW cW-W 7 A.U413 A.A305 U-A WC 20-XX cWW cW-W 8 A.C414 A.G304 C-G WC 19-XIX cWW cW-W 9 A.C415 A.G303 C-G WC 19-XIX cWW cW-W 10 A.U416 A.A302 U-A WC 20-XX cWW cW-W 11 A.C451 A.G300 C-G WC 19-XIX cWW cW-W 12 A.G453 A.C468 G-C WC 19-XIX cWW cW-W 13 A.G454 A.C467 G-C WC 19-XIX cWW cW-W 14 A.G455 A.C466 G-C WC 19-XIX cWW cW-W 15 A.A456 A.U465 A-U WC 20-XX cWW cW-W 16 A.G457 A.C464 G-C WC 19-XIX cWW cW-W 17 A.A2436 A.U463 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#17[1] bps=12 strand-1 5'-AUACGGCGGAAC-3' bp-type ...||||||||. strand-2 3'-AAGGCUGCCUUA-5' helix-form x......A..x 1 A.A418 A.A449 A+A -- -- tHH tM+M 2 A.U420 A.A448 U-A rHoogsteen 24-XXIV tWH tW-M 3 A.A421 A.G447 A-G Sheared 11-XI tHS tM-m 4 A.C422 A.G446 C-G WC 19-XIX cWW cW-W 5 A.G423 A.C445 G-C WC 19-XIX cWW cW-W 6 A.G424 A.U444 G-U Wobble 28-XXVIII cWW cW-W 7 A.C425 A.G443 C-G WC 19-XIX cWW cW-W 8 A.G426 A.C442 G-C WC 19-XIX cWW cW-W 9 A.G427 A.C441 G-C WC 19-XIX cWW cW-W 10 A.A428 A.U440 A-U WC 20-XX cWW cW-W 11 A.A429 A.U439 A-U WC 20-XX cWW cW-W 12 A.C430 A.A437 C-A -- -- cWW cW-W -------------------------------------------------------------------------- helix#18[1] bps=6 strand-1 5'-AUACCG-3' bp-type ...||. strand-2 3'-AAGGGA-5' helix-form x..A. 1 A.A504 A.A518 A+A -- 02-II tHH tM+M 2 A.U506 A.A517 U-A rHoogsteen 24-XXIV tWH tW-M 3 A.A507 A.G516 A-G Sheared 11-XI tHS tM-m 4 A.C508 A.G515 C-G WC 19-XIX cWW cW-W 5 A.C509 A.G514 C-G WC 19-XIX cWW cW-W 6 A.G510 A.A513 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#19[0] bps=3 strand-1 5'-AAG-3' bp-type ..| strand-2 3'-GUC-5' helix-form .x 1 A.A527 A.G523 A-G Sheared 11-XI tHS tM-m 2 A.A526 A.U522 A-U rHoogsteen 24-XXIV tHW tM-W 3 A.G528 A.C555 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#20[1] bps=8 strand-1 5'-GGGGAGUG-3' bp-type ||||.... strand-2 3'-CCCCCGAA-5' helix-form AAAxxxx 1 A.G539 A.C534 G-C WC 19-XIX cWW cW-W 2 A.G540 A.C533 G-C WC 19-XIX cWW cW-W 3 A.G541 A.C532 G-C WC 19-XIX cWW cW-W 4 A.G542 A.C531 G-C WC 19-XIX cWW cW-W 5 A.A543 A.C529 A-C -- -- cWS cW-m 6 A.G544 A.G552 G-G -- -- .WH .W-M 7 A.U545 A.A549 U-A rHoogsteen 24-XXIV tWH tW-M 8 A.G546 A.A551 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#21[1] bps=6 strand-1 5'-AACCUG-3' bp-type .||||| strand-2 3'-UUGGAC-5' helix-form xAAAA 1 A.A575 A.U2070 A-U rHoogsteen 24-XXIV tHW tM-W 2 A.A2052 A.U2069 A-U WC 20-XX cWW cW-W 3 A.C2053 A.G2068 C-G WC 19-XIX cWW cW-W 4 A.C2054 A.G2067 C-G WC 19-XIX cWW cW-W 5 A.U2055 A.A2066 U-A WC 20-XX cWW cW-W 6 A.G2056 A.C2065 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#22[2] bps=10 strand-1 5'-GUCAGAGCCC-3' bp-type ||||..|||| strand-2 3'-CGGUAGUGGG-5' helix-form AAA....AA 1 A.G579 A.C604 G-C WC 19-XIX cWW cW-W 2 A.U580 A.G603 U-G Wobble 28-XXVIII cWW cW-W 3 A.C581 A.G602 C-G WC 19-XIX cWW cW-W 4 A.A582 A.U601 A-U WC 20-XX cWW cW-W 5 A.G583 A.A600 G-A Sheared 11-XI tSH tm-M 6 A.A584 A.G599 A-G Sheared 11-XI tHS tM-m 7 A.G585 A.U598 G-U Wobble 28-XXVIII cWW cW-W 8 A.C586 A.G597 C-G WC 19-XIX cWW cW-W 9 A.C587 A.G596 C-G WC 19-XIX cWW cW-W 10 A.C588 A.G595 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#23[1] bps=6 strand-1 5'-GCCCGG-3' bp-type .||.|. strand-2 3'-UGGUCG-5' helix-form x...x 1 A.G631 A.U857 G+U -- -- cHW cM+W 2 A.C718 A.G856 C-G WC 19-XIX cWW cW-W 3 A.C719 A.G855 C-G WC 19-XIX cWW cW-W 4 A.C720 A.U854 C-U -- -- cWW cW-W 5 A.G721 A.C853 G-C WC 19-XIX cWW cW-W 6 A.G2096 A.G852 G-G -- -- cSS cm-m -------------------------------------------------------------------------- helix#24[2] bps=14 strand-1 5'-UUACGAUCUCGUGC-3' bp-type .|||||||.||||| strand-2 3'-AAUGCUGGUGCAUG-5' helix-form xAAAA..AAAAAA 1 A.U632 A.A717 U+A -- -- tWS tW+m 2 A.U633 A.A715 U-A WC 20-XX cWW cW-W 3 A.A634 A.U714 A-U WC 20-XX cWW cW-W 4 A.C635 A.G713 C-G WC 19-XIX cWW cW-W 5 A.G636 A.C712 G-C WC 19-XIX cWW cW-W 6 A.A637 A.U711 A-U WC 20-XX cWW cW-W 7 A.U638 A.G710 U-G Wobble 28-XXVIII cWW cW-W 8 A.C639 A.G709 C-G WC 19-XIX cWW cW-W 9 A.U640 A.U708 U-U -- -- cWW cW-W 10 A.C641 A.G707 C-G WC 19-XIX cWW cW-W 11 A.G642 A.C706 G-C WC 19-XIX cWW cW-W 12 A.U643 A.A705 U-A WC 20-XX cWW cW-W 13 A.G644 A.U704 G-U Wobble 28-XXVIII cWW cW-W 14 A.C645 A.G703 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#25[2] bps=10 strand-1 5'-AGGUUAGCAG-3' bp-type .|||..|||. strand-2 3'-GCCGAGCGUA-5' helix-form .A..x.AA. 1 A.A647 A.G671 A+G Linker -- tWS tW+m 2 A.G648 A.C670 G-C WC 19-XIX cWW cW-W 3 A.G649 A.C669 G-C WC 19-XIX cWW cW-W 4 A.U650 A.G668 U-G Wobble 28-XXVIII cWW cW-W 5 A.U651 A.A667 U-A rHoogsteen 24-XXIV tWH tW-M 6 A.A653 A.G665 A-G Sheared 11-XI tHS tM-m 7 A.G654 A.C664 G-C WC 19-XIX cWW cW-W 8 A.C655 A.G663 C-G WC 19-XIX cWW cW-W 9 A.A656 A.U662 A-U WC 20-XX cWW cW-W 10 A.G657 A.A661 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#26[1] bps=3 strand-1 5'-GCG-3' bp-type ||. strand-2 3'-CGA-5' helix-form A. 1 A.G674 A.C681 G-C WC 19-XIX cWW cW-W 2 A.C675 A.G680 C-G WC 19-XIX cWW cW-W 3 A.G676 A.A679 G-A -- -- tSH tm-M -------------------------------------------------------------------------- helix#27[1] bps=6 strand-1 5'-AGUCUG-3' bp-type .||||. strand-2 3'-GCGGGA-5' helix-form ..... 1 A.A683 A.G697 A+G Linker -- tWS tW+m 2 A.G684 A.C696 G-C WC 19-XIX cWW cW-W 3 A.U685 A.G695 U-G Wobble 28-XXVIII cWW cW-W 4 A.C686 A.G694 C-G WC 19-XIX cWW cW-W 5 A.U687 A.G693 U-G Wobble 28-XXVIII cWW cW-W 6 A.G688 A.A692 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#28[2] bps=14 strand-1 5'-AAACCAGGUGGGUG-3' bp-type ...||||||||||. strand-2 3'-UAAGGUCCACCCGA-5' helix-form .x.AAAA.xxA.x 1 A.A722 A.U850 A-U rHoogsteen 24-XXIV tHW tM-W 2 A.A723 A.A849 A-A -- 05-V tHW tM-W 3 A.A724 A.A847 A+A -- 01-I tWW tW+W 4 A.C725 A.G846 C-G WC 19-XIX cWW cW-W 5 A.C726 A.G845 C-G WC 19-XIX cWW cW-W 6 A.A727 A.U844 A-U WC 20-XX cWW cW-W 7 A.G728 A.C843 G-C WC 19-XIX cWW cW-W 8 A.G729 A.C842 G-C WC 19-XIX cWW cW-W 9 A.U730 A.A841 U-A WC 20-XX cWW cW-W 10 A.G822 A.C838 G-C WC 19-XIX cWW cW-W 11 A.G824 A.C834 G-C WC 19-XIX cWW cW-W 12 A.G825 A.C833 G-C WC 19-XIX cWW cW-W 13 A.U826 A.G832 U-G Wobble 28-XXVIII cWW cW-W 14 A.G827 A.A830 G-A -- -- tSH tm-M -------------------------------------------------------------------------- helix#29[1] bps=12 strand-1 5'-CUACCCAUGUCC-3' bp-type ..|||||||||| strand-2 3'-AAUGGGUGUGGG-5' helix-form xxAA.A....x 1 A.C734 A.A1809 C-A -- -- cSW cm-W 2 A.U735 A.A732 U-A -- -- tWH tW-M 3 A.A736 A.U820 A-U WC 20-XX cWW cW-W 4 A.C737 A.G819 C-G WC 19-XIX cWW cW-W 5 A.C738 A.G818 C-G WC 19-XIX cWW cW-W 6 A.C739 A.G817 C-G WC 19-XIX cWW cW-W 7 A.A740 A.U816 A-U WC 20-XX cWW cW-W 8 A.U741 A.G815 U-G Wobble 28-XXVIII cWW cW-W 9 A.G742 A.U814 G-U Wobble 28-XXVIII cWW cW-W 10 A.U743 A.G813 U-G Wobble 28-XXVIII cWW cW-W 11 A.C744 A.G812 C-G WC 19-XIX cWW cW-W 12 A.C745 A.G810 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#30[4] bps=25 strand-1 5'-ACUGAAUGGAGCCCGCCCCGCACGU-3' bp-type .||||||...||||.||||||||.. strand-2 3'-GGACUUGAAGUGGGAGGGGCGUGAG-5' helix-form ..AAAA....x.A.xAAx.AAAxx 1 A.A765 A.G760 A+G -- 10-X tWS tW+m 2 A.C766 A.G759 C-G WC 19-XIX cWW cW-W 3 A.U767 A.A758 U-A WC 20-XX cWW cW-W 4 A.G768 A.C757 G-C WC 19-XIX cWW cW-W 5 A.A769 A.U756 A-U WC 20-XX cWW cW-W 6 A.A770 A.U755 A-U WC 20-XX cWW cW-W 7 A.U771 A.G754 U-G Wobble 28-XXVIII cWW cW-W 8 A.G772 A.A753 G-A Sheared 11-XI tSH tm-M 9 A.G773 A.A752 G-A Sheared 11-XI tSH tm-M 10 A.A774 A.G751 A-G Sheared 11-XI tHS tM-m 11 A.G775 A.U750 G-U Wobble 28-XXVIII cWW cW-W 12 A.C777 A.G749 C-G WC 19-XIX cWW cW-W 13 A.C778 A.G748 C-G WC 19-XIX cWW cW-W 14 A.C779 A.G747 C-G WC 19-XIX cWW cW-W 15 A.G780 A.A746 G-A Sheared 11-XI tSH tm-M 16 A.C783 A.G807 C-G WC 19-XIX cWW cW-W 17 A.C784 A.G806 C-G WC 19-XIX cWW cW-W 18 A.C785 A.G805 C-G WC 19-XIX cWW cW-W 19 A.C787 A.G804 C-G WC 19-XIX cWW cW-W 20 A.G788 A.C803 G-C WC 19-XIX cWW cW-W 21 A.C789 A.G802 C-G WC 19-XIX cWW cW-W 22 A.A790 A.U801 A-U WC 20-XX cWW cW-W 23 A.C791 A.G800 C-G WC 19-XIX cWW cW-W 24 A.G792 A.A797 G+A -- 10-X tSW tm+W 25 A.U793 A.G795 U-G -- -- .SS .m-m -------------------------------------------------------------------------- helix#31[1] bps=6 strand-1 5'-GACAAA-3' bp-type |.||.. strand-2 5'-CUGUUU-3' helix-form xx.x. 1 A.G776 A.C1803 G-C WC 19-XIX cWW cW-W 2 A.A811 A.U1804 A+U Hoogsteen 23-XXIII cHW cM+W 3 A.C1817 A.G1805 C-G WC 19-XIX cWW cW-W 4 A.A1816 A.U1806 A-U WC 20-XX cWW cW-W 5 A.A1814 A.U1807 A-U rHoogsteen 24-XXIV tHW tM-W 6 A.A1813 A.U1808 A+U -- -- tHH tM+M -------------------------------------------------------------------------- helix#32[4] bps=23 strand-1 5'-GCUAGCCUCAAGGAGAGUCUGGA-3' bp-type |||||||||||||.|||||.... strand-2 3'-CGAUUGGGGUUCCUUUCAGACCG-5' helix-form .A.x.x..AAA.xx.AAAxx.. 1 A.G879 A.C872 G-C WC 19-XIX cWW cW-W 2 A.C880 A.G871 C-G WC 19-XIX cWW cW-W 3 A.U881 A.A870 U-A WC 20-XX cWW cW-W 4 A.A882 A.U869 A-U WC 20-XX cWW cW-W 5 A.G883 A.U989 G-U Wobble 28-XXVIII cWW cW-W 6 A.C884 A.G988 C-G WC 19-XIX cWW cW-W 7 A.C885 A.G986 C-G WC 19-XIX cWW cW-W 8 A.U886 A.G985 U-G Wobble 28-XXVIII cWW cW-W 9 A.C887 A.G984 C-G WC 19-XIX cWW cW-W 10 A.A888 A.U983 A-U WC 20-XX cWW cW-W 11 A.A889 A.U982 A-U WC 20-XX cWW cW-W 12 A.G890 A.C981 G-C WC 19-XIX cWW cW-W 13 A.G891 A.C980 G-C WC 19-XIX cWW cW-W 14 A.A894 A.U979 A+U Hoogsteen 23-XXIII cHW cM+W 15 A.G895 A.U977 G-U Wobble 28-XXVIII cWW cW-W 16 A.A896 A.U976 A-U WC 20-XX cWW cW-W 17 A.G897 A.C975 G-C WC 19-XIX cWW cW-W 18 A.U898 A.A974 U-A WC 20-XX cWW cW-W 19 A.C899 A.G973 C-G WC 19-XIX cWW cW-W 20 A.U901 A.A971 U+A Hoogsteen 23-XXIII cHW cM+W 21 A.G902 A.C969 G+C -- -- cWH cW+M 22 A.G903 A.C968 G+C -- -- cHW cM+W 23 A.A904 A.G967 A-G Imino 08-VIII cWW cW-W -------------------------------------------------------------------------- helix#33[2] bps=13 strand-1 5'-CAGUCACUCCGAA-3' bp-type ||.||||..|... strand-2 3'-GUUAGUGAAGAUA-5' helix-form A...Axxx...x 1 A.C951 A.G920 C-G WC 19-XIX cWW cW-W 2 A.A952 A.U919 A-U WC 20-XX cWW cW-W 3 A.G953 A.U918 G-U -- -- cWW cW-W 4 A.U954 A.A917 U-A WC 20-XX cWW cW-W 5 A.C955 A.G916 C-G WC 19-XIX cWW cW-W 6 A.A956 A.U915 A-U WC 20-XX cWW cW-W 7 A.C959 A.G911 C-G WC 19-XIX cWW cW-W 8 A.U960 A.A913 U-A -- -- cSW cm-W 9 A.C961 A.A910 C-A -- -- cWW cW-W 10 A.C962 A.G909 C-G WC 19-XIX cWW cW-W 11 A.G963 A.A908 G-A Sheared 11-XI tSH tm-M 12 A.A964 A.U907 A-U -- -- tHW tM-W 13 A.A965 A.A2297 A-A -- -- cHW cM-W -------------------------------------------------------------------------- helix#34[5] bps=32 strand-1 5'-AAUCCGUAGUCGAAGGAGAGCGUUCUAAGGGC-3' bp-type .||.|||||||...|||||||.|||||...|| strand-2 3'-GUGAGCGUCAGAGGCCUCUCGUAAGAUUCGCG-5' helix-form xA.AA..AAAxxx...AA.x.x.AAA..... 1 A.A1006 A.G1002 A-G -- -- tHW tM-W 2 A.A1008 A.U1001 A-U WC 20-XX cWW cW-W 3 A.U1009 A.G1000 U-G Wobble 28-XXVIII cWW cW-W 4 A.C1010 A.A999 C-A -- -- cWW cW-W 5 A.C1011 A.G998 C-G WC 19-XIX cWW cW-W 6 A.G1012 A.C997 G-C WC 19-XIX cWW cW-W 7 A.U1013 A.G996 U-G Wobble 28-XXVIII cWW cW-W 8 A.A1014 A.U995 A-U WC 20-XX cWW cW-W 9 A.G1015 A.C994 G-C WC 19-XIX cWW cW-W 10 A.U1016 A.A993 U-A WC 20-XX cWW cW-W 11 A.C1017 A.G992 C-G WC 19-XIX cWW cW-W 12 A.G1018 A.A868 G-A Sheared 11-XI tSH tm-M 13 A.A1019 A.G1228 A-G -- -- cSS cm-m 14 A.A1230 A.G865 A-G Sheared 11-XI tHS tM-m 15 A.G1231 A.C864 G-C WC 19-XIX cWW cW-W 16 A.G1232 A.C863 G-C WC 19-XIX cWW cW-W 17 A.A1233 A.U862 A-U WC 20-XX cWW cW-W 18 A.G1234 A.C861 G-C WC 19-XIX cWW cW-W 19 A.A1235 A.U860 A-U WC 20-XX cWW cW-W 20 A.G1236 A.C859 G-C WC 19-XIX cWW cW-W 21 A.C1237 A.G1290 C-G WC 19-XIX cWW cW-W 22 A.G1238 A.U1289 G-U -- -- cWW cW-W 23 A.U1239 A.A1287 U-A WC 20-XX cWW cW-W 24 A.U1240 A.A1286 U-A WC 20-XX cWW cW-W 25 A.C1241 A.G1285 C-G WC 19-XIX cWW cW-W 26 A.U1242 A.A1284 U-A WC 20-XX cWW cW-W 27 A.A1243 A.U1283 A-U WC 20-XX cWW cW-W 28 A.A1244 A.U1282 A+U -- -- cHW cM+W 29 A.G1245 A.C1281 G-C -- -- cHH cM-M 30 A.G1246 A.G1280 G+G -- 06-VI cHW cM+W 31 A.G1247 A.C1279 G-C WC 19-XIX cWW cW-W 32 A.C1248 A.G1278 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#35[1] bps=5 strand-1 5'-AAGGG-3' bp-type ..||| strand-2 3'-AACCC-5' helix-form x.AA 1 A.A1020 A.A1036 A-A ~Sheared -- tSH tm-M 2 A.A1021 A.A1034 A-A -- -- tH. tM-. 3 A.G1022 A.C1033 G-C WC 19-XIX cWW cW-W 4 A.G1023 A.C1032 G-C WC 19-XIX cWW cW-W 5 A.G1024 A.C1031 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#36[1] bps=5 strand-1 5'-GGCCC-3' bp-type |.||| strand-2 3'-CGGGG-5' helix-form .xAA 1 A.G1070 A.C1186 G-C WC 19-XIX cWW cW-W 2 A.G1071 A.G1185 G+G -- 03-III tWW tW+W 3 A.C1051 A.G1184 C-G WC 19-XIX cWW cW-W 4 A.C1052 A.G1183 C-G WC 19-XIX cWW cW-W 5 A.C1053 A.G1182 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#37[3] bps=13 strand-1 5'-AGGAGUGGGUUGC-3' bp-type .||.|.||...|| strand-2 3'-GCCGCGUCACAUG-5' helix-form .A.x...xx.x. 1 A.A1075 A.G1171 A-G Sheared 11-XI tHS tM-m 2 A.G1076 A.C1170 G-C WC 19-XIX cWW cW-W 3 A.G1077 A.C1169 G-C WC 19-XIX cWW cW-W 4 A.A1078 A.G1168 A-G -- -- cWW cW-W 5 A.G1080 A.C1167 G-C WC 19-XIX cWW cW-W 6 A.U1081 A.G1166 U-G -- -- cWW cW-W 7 A.G1082 A.U1165 G-U Wobble 28-XXVIII cWW cW-W 8 A.G1083 A.C1164 G-C WC 19-XIX cWW cW-W 9 A.G1085 A.A1084 G+A Platform -- cHS cM+m 10 A.U1086 A.C1162 U-C -- -- cWW cW-W 11 A.U1087 A.A1161 U-A -- -- cSW cm-W 12 A.G1088 A.U1159 G-U Wobble 28-XXVIII cWW cW-W 13 A.C1089 A.G1158 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#38[5] bps=27 strand-1 5'-AACGUAUCACCGAGCUGCGGACUGUUC-3' bp-type .||||||||||..|||||||||||||| strand-2 3'-UUGCAUAGUGGAUCGACGCCUGACAAG-5' helix-form xAA...xxA..xxAAxAAAx.AAAA. 1 A.A1188 A.U1065 A-U rHoogsteen 24-XXIV tHW tM-W 2 A.A1190 A.U1064 A-U WC 20-XX cWW cW-W 3 A.C1191 A.G1063 C-G WC 19-XIX cWW cW-W 4 A.G1192 A.C1062 G-C WC 19-XIX cWW cW-W 5 A.U1193 A.A1061 U-A WC 20-XX cWW cW-W 6 A.A1194 A.U1060 A-U WC 20-XX cWW cW-W 7 A.U1195 A.A1059 U-A WC 20-XX cWW cW-W 8 A.C1196 A.G1057 C-G WC 19-XIX cWW cW-W 9 A.A1197 A.U1050 A-U WC 20-XX cWW cW-W 10 A.C1198 A.G1049 C-G WC 19-XIX cWW cW-W 11 A.C1199 A.G1048 C-G WC 19-XIX cWW cW-W 12 A.G1200 A.A1047 G-A Sheared 11-XI tSH tm-M 13 A.A1201 A.U1045 A-U rHoogsteen 24-XXIV tHW tM-W 14 A.G1203 A.C1044 G-C WC 19-XIX cWW cW-W 15 A.C1204 A.G1043 C-G WC 19-XIX cWW cW-W 16 A.U1205 A.A1042 U-A WC 20-XX cWW cW-W 17 A.G1206 A.C1040 G-C WC 19-XIX cWW cW-W 18 A.C1207 A.G1039 C-G WC 19-XIX cWW cW-W 19 A.G1208 A.C1038 G-C WC 19-XIX cWW cW-W 20 A.G1209 A.C1037 G-C WC 19-XIX cWW cW-W 21 A.A1210 A.U1226 A-U WC 20-XX cWW cW-W 22 A.C1211 A.G1225 C-G WC 19-XIX cWW cW-W 23 A.U1212 A.A1224 U-A WC 20-XX cWW cW-W 24 A.G1213 A.C1223 G-C WC 19-XIX cWW cW-W 25 A.U1214 A.A1222 U-A WC 20-XX cWW cW-W 26 A.U1215 A.A1221 U-A WC 20-XX cWW cW-W 27 A.C1216 A.G1220 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#39[2] bps=11 strand-1 5'-GAAGCCAGUCC-3' bp-type ...|||||||| strand-2 3'-AGGUGGUCAGG-5' helix-form ...AAAAxxA 1 A.G1252 A.A1277 G-A Sheared 11-XI tSH tm-M 2 A.A1253 A.G1276 A-G Sheared 11-XI tHS tM-m 3 A.A1254 A.G1275 A-G Sheared 11-XI tHS tM-m 4 A.G1255 A.U1274 G-U Wobble 28-XXVIII cWW cW-W 5 A.C1256 A.G1273 C-G WC 19-XIX cWW cW-W 6 A.C1257 A.G1272 C-G WC 19-XIX cWW cW-W 7 A.A1258 A.U1271 A-U WC 20-XX cWW cW-W 8 A.G1259 A.C1270 G-C WC 19-XIX cWW cW-W 9 A.U591 A.A1269 U-A WC 20-XX cWW cW-W 10 A.C1261 A.G1268 C-G WC 19-XIX cWW cW-W 11 A.C1262 A.G1267 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#40[4] bps=28 strand-1 5'-AGCCGGUAUGUUAGCCGAGACUCUCGUU-3' bp-type .|||||||.....||||||.|||||||| strand-2 3'-GCGGCCAUUAAAGUGGCUCAGAGAGCAA-5' helix-form xAAAAAx..xx..Ax.A.x.AAAAAAA 1 A.A1294 A.G629 A-G Sheared 11-XI tHS tM-m 2 A.G1296 A.C628 G-C WC 19-XIX cWW cW-W 3 A.C1297 A.G627 C-G WC 19-XIX cWW cW-W 4 A.C1298 A.G626 C-G WC 19-XIX cWW cW-W 5 A.G1299 A.C625 G-C WC 19-XIX cWW cW-W 6 A.G1300 A.C624 G-C WC 19-XIX cWW cW-W 7 A.U1301 A.A623 U-A WC 20-XX cWW cW-W 8 A.A1302 A.U2046 A-U WC 20-XX cWW cW-W 9 A.U1303 A.U2045 U-U -- 16-XVI cWW cW-W 10 A.G1304 A.A2044 G-A Sheared 11-XI tSH tm-M 11 A.U794 A.A2043 U-A -- -- cWS cW-m 12 A.U1307 A.A2042 U-A rHoogsteen 24-XXIV tWH tW-M 13 A.A1308 A.G2041 A-G Sheared 11-XI tHS tM-m 14 A.G1309 A.U2040 G-U Wobble 28-XXVIII cWW cW-W 15 A.C1310 A.G2039 C-G WC 19-XIX cWW cW-W 16 A.C1693 A.G2038 C-G WC 19-XIX cWW cW-W 17 A.G1694 A.C2037 G-C WC 19-XIX cWW cW-W 18 A.A1695 A.U2036 A-U WC 20-XX cWW cW-W 19 A.G1696 A.C2035 G-C WC 19-XIX cWW cW-W 20 A.A1700 A.A2034 A-A ~Sheared -- tHS tM-m 21 A.C1701 A.G2033 C-G WC 19-XIX cWW cW-W 22 A.U1702 A.A2032 U-A WC 20-XX cWW cW-W 23 A.C1703 A.G2031 C-G WC 19-XIX cWW cW-W 24 A.U1704 A.A2030 U-A WC 20-XX cWW cW-W 25 A.C1705 A.G2029 C-G WC 19-XIX cWW cW-W 26 A.G1706 A.C2028 G-C WC 19-XIX cWW cW-W 27 A.U1707 A.A2027 U-A WC 20-XX cWW cW-W 28 A.U1708 A.A2026 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#41[1] bps=3 strand-1 5'-GCC-3' bp-type ||| strand-2 3'-CGG-5' helix-form A. 1 A.G1342 A.C1670 G-C WC 19-XIX cWW cW-W 2 A.C1343 A.G1669 C-G WC 19-XIX cWW cW-W 3 A.C1344 A.G1668 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#42[1] bps=4 strand-1 5'-AGGU-3' bp-type .||| strand-2 3'-GCCA-5' helix-form .Ax 1 A.A1347 A.G1651 A+G -- -- tHH tM+M 2 A.G1348 A.C1650 G-C WC 19-XIX cWW cW-W 3 A.G1349 A.C1649 G-C WC 19-XIX cWW cW-W 4 A.U1352 A.A1648 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#43[2] bps=8 strand-1 5'-CCUGAGGG-3' bp-type |||||||| strand-2 3'-GGACUCCC-5' helix-form AAAAAx. 1 A.C1353 A.G1377 C-G WC 19-XIX cWW cW-W 2 A.C1354 A.G1376 C-G WC 19-XIX cWW cW-W 3 A.U1355 A.A1375 U-A WC 20-XX cWW cW-W 4 A.G1356 A.C1374 G-C WC 19-XIX cWW cW-W 5 A.A1357 A.U1373 A-U WC 20-XX cWW cW-W 6 A.G1358 A.C1372 G-C WC 19-XIX cWW cW-W 7 A.G1362 A.C1370 G-C WC 19-XIX cWW cW-W 8 A.G1363 A.C1369 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#44[3] bps=18 strand-1 5'-UACCCCUCCACCGAGGAG-3' bp-type ..||||||||||.||||. strand-2 3'-GUGGGGAGGUGGAUCCUA-5' helix-form xxAAAAAx..A.x.AA. 1 A.U1368 A.G1322 U+G -- -- cHS cM+m 2 A.A1325 A.U1321 A-U rHoogsteen 24-XXIV tHW tM-W 3 A.C1328 A.G1320 C-G WC 19-XIX cWW cW-W 4 A.C1329 A.G1319 C-G WC 19-XIX cWW cW-W 5 A.C1330 A.G1318 C-G WC 19-XIX cWW cW-W 6 A.C1331 A.G1317 C-G WC 19-XIX cWW cW-W 7 A.U1332 A.A1316 U-A WC 20-XX cWW cW-W 8 A.C1333 A.G1315 C-G WC 19-XIX cWW cW-W 9 A.C1334 A.G1690 C-G WC 19-XIX cWW cW-W 10 A.A1335 A.U1689 A-U WC 20-XX cWW cW-W 11 A.C1336 A.G1688 C-G WC 19-XIX cWW cW-W 12 A.C1337 A.G1687 C-G WC 19-XIX cWW cW-W 13 A.G1338 A.A1686 G-A Sheared 11-XI tSH tm-M 14 A.A1672 A.U1684 A-U WC 20-XX cWW cW-W 15 A.G1673 A.C1683 G-C WC 19-XIX cWW cW-W 16 A.G1674 A.C1682 G-C WC 19-XIX cWW cW-W 17 A.A1675 A.U1681 A-U WC 20-XX cWW cW-W 18 A.G1676 A.A1680 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#45[1] bps=5 strand-1 5'-ACGGG-3' bp-type .|||| strand-2 3'-UGCCC-5' helix-form xAAA 1 A.A1381 A.U1647 A-U rHoogsteen 24-XXIV tHW tM-W 2 A.C1384 A.G1646 C-G WC 19-XIX cWW cW-W 3 A.G1385 A.C1645 G-C WC 19-XIX cWW cW-W 4 A.G1386 A.C1644 G-C WC 19-XIX cWW cW-W 5 A.G1387 A.C1643 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#46[7] bps=43 strand-1 5'-CCUUAGCCGAGGGGCGGGGAGAGAAUGUUGGUACAGCUUGGGU-3' bp-type ||...|||...||||||||...|.|.||..||||||||.|||| strand-2 3'-GGAAGCGGAUCCCCGCCCCCAUCUUCCAGUUAUGUCGGUCCCA-5' helix-form Axxx.AA..xxAAAAAx...xx....A..A...AAA...x.. 1 A.C1389 A.G1420 C-G WC 19-XIX cWW cW-W 2 A.C1390 A.G1419 C-G WC 19-XIX cWW cW-W 3 A.U1391 A.A1417 U-A rHoogsteen 24-XXIV tWH tW-M 4 A.U1418 A.A1392 U-A -- -- cWW cW-W 5 A.A1393 A.G1416 A-G Sheared 11-XI tHS tM-m 6 A.G1394 A.C1415 G-C WC 19-XIX cWW cW-W 7 A.C1395 A.G1414 C-G WC 19-XIX cWW cW-W 8 A.C1396 A.G1413 C-G WC 19-XIX cWW cW-W 9 A.G1397 A.A1412 G-A Sheared 11-XI tSH tm-M 10 A.A1398 A.U1411 A-U rHoogsteen 24-XXIV tHW tM-W 11 A.G1399 A.C2243 G+C rWC 22-XXII tWW tW+W 12 A.G2244 A.C2238 G-C WC 19-XIX cWW cW-W 13 A.G2245 A.C2237 G-C WC 19-XIX cWW cW-W 14 A.G2246 A.C2236 G-C WC 19-XIX cWW cW-W 15 A.C2247 A.G2235 C-G WC 19-XIX cWW cW-W 16 A.G2248 A.C2234 G-C WC 19-XIX cWW cW-W 17 A.G2249 A.C2233 G-C WC 19-XIX cWW cW-W 18 A.G2250 A.C2231 G-C WC 19-XIX cWW cW-W 19 A.G2251 A.C2230 G-C WC 19-XIX cWW cW-W 20 A.A2252 A.C2229 A-C -- -- cWW cW-W 21 A.G2253 A.A2228 G-A Sheared 11-XI tSH tm-M 22 A.A2254 A.U2226 A-U rHoogsteen 24-XXIV tHW tM-W 23 A.G2122 A.C2225 G-C WC 19-XIX cWW cW-W 24 A.A2123 A.U2224 A-U -- -- .WS .W-m 25 A.A2124 A.U2223 A-U WC 20-XX cWW cW-W 26 A.U2125 A.C2222 U-C -- 18-XVIII cWW cW-W 27 A.G2126 A.C2221 G-C WC 19-XIX cWW cW-W 28 A.U2127 A.A2220 U-A WC 20-XX cWW cW-W 29 A.U2128 A.G2219 U-G -- -- cWW cW-W 30 A.G2129 A.U2218 G-U -- -- cWW cW-W 31 A.G2130 A.U2217 G-U Wobble 28-XXVIII cWW cW-W 32 A.U2131 A.A2216 U-A WC 20-XX cWW cW-W 33 A.A2132 A.U2215 A-U WC 20-XX cWW cW-W 34 A.C2133 A.G2214 C-G WC 19-XIX cWW cW-W 35 A.A2134 A.U2213 A-U WC 20-XX cWW cW-W 36 A.G2135 A.C2212 G-C WC 19-XIX cWW cW-W 37 A.C2136 A.G2211 C-G WC 19-XIX cWW cW-W 38 A.U2137 A.G2210 U-G Wobble 28-XXVIII cWW cW-W 39 A.U2138 A.U2209 U-U -- -- cWW cW-W 40 A.G2139 A.C2208 G-C WC 19-XIX cWW cW-W 41 A.G2149 A.C2207 G-C WC 19-XIX cWW cW-W 42 A.G2150 A.C2206 G-C WC 19-XIX cWW cW-W 43 A.U2151 A.A2205 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#47[1] bps=4 strand-1 5'-GCCG-3' bp-type |||. strand-2 3'-CGGA-5' helix-form AA. 1 A.G1400 A.C1409 G-C WC 19-XIX cWW cW-W 2 A.C1401 A.G1408 C-G WC 19-XIX cWW cW-W 3 A.C1402 A.G1407 C-G WC 19-XIX cWW cW-W 4 A.G1403 A.A1406 G-A -- -- tSH tm-M -------------------------------------------------------------------------- helix#48[4] bps=19 strand-1 5'-ACCUGUACCACCUCUCACC-3' bp-type .|||||||||||||||||| strand-2 3'-UGGACAUGGUGGAGAGUGG-5' helix-form xAAA.x.xAAAAxAAAAA 1 A.A1434 A.U1429 A-U rHoogsteen 24-XXIV tHW tM-W 2 A.C1437 A.G1428 C-G WC 19-XIX cWW cW-W 3 A.C1438 A.G1427 C-G WC 19-XIX cWW cW-W 4 A.U1439 A.A1426 U-A WC 20-XX cWW cW-W 5 A.G1440 A.C1425 G-C WC 19-XIX cWW cW-W 6 A.U1441 A.A1424 U-A WC 20-XX cWW cW-W 7 A.A1442 A.U1383 A-U WC 20-XX cWW cW-W 8 A.C1443 A.G1382 C-G WC 19-XIX cWW cW-W 9 A.C1444 A.G1642 C-G WC 19-XIX cWW cW-W 10 A.A1445 A.U1641 A-U WC 20-XX cWW cW-W 11 A.C1446 A.G1640 C-G WC 19-XIX cWW cW-W 12 A.C1447 A.G1639 C-G WC 19-XIX cWW cW-W 13 A.U1448 A.A1638 U-A WC 20-XX cWW cW-W 14 A.C1450 A.G1637 C-G WC 19-XIX cWW cW-W 15 A.U1451 A.A1636 U-A WC 20-XX cWW cW-W 16 A.C1452 A.G1635 C-G WC 19-XIX cWW cW-W 17 A.A1453 A.U1634 A-U WC 20-XX cWW cW-W 18 A.C1454 A.G1633 C-G WC 19-XIX cWW cW-W 19 A.C1455 A.G1632 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#49[2] bps=14 strand-1 5'-GAGCAAGGGGGGAC-3' bp-type ..||..||||.... strand-2 3'-AGCGAUCUCCGAAA-5' helix-form ..A..x..A.... 1 A.G1460 A.A1631 G-A Sheared 11-XI tSH tm-M 2 A.A1461 A.G1630 A-G Sheared 11-XI tHS tM-m 3 A.G1462 A.C1629 G-C WC 19-XIX cWW cW-W 4 A.C1463 A.G1628 C-G WC 19-XIX cWW cW-W 5 A.A1464 A.A1627 A-A ~Sheared -- tSH tm-M 6 A.A1465 A.U1626 A-U rHoogsteen 24-XXIV tHW tM-W 7 A.G1467 A.C1625 G-C WC 19-XIX cWW cW-W 8 A.G1468 A.U1624 G-U Wobble 28-XXVIII cWW cW-W 9 A.G1469 A.C1623 G-C WC 19-XIX cWW cW-W 10 A.G1470 A.C1622 G-C WC 19-XIX cWW cW-W 11 A.G1471 A.G1621 G-G -- -- tSH tm-M 12 A.G1472 A.A1620 G-A Sheared 11-XI tSH tm-M 13 A.A1473 A.A1619 A+A -- 02-II tHH tM+M 14 A.C1474 A.A1618 C-A -- -- tWH tW-M -------------------------------------------------------------------------- helix#50[4] bps=24 strand-1 5'-UUCCGCGUUCCUGAUCCAACUGCC-3' bp-type .|.|||.|.|||..|||..||||| strand-2 3'-GGCGCGAAUGGGAUAGGAGGACGG-5' helix-form x..AA.x..A...xA..xAAAAx 1 A.U1505 A.G1497 U-G -- -- cWW cW-W 2 A.U1507 A.G1496 U-G Wobble 28-XXVIII cWW cW-W 3 A.C1508 A.C1495 C-C -- -- cWW cW-W 4 A.C1509 A.G1494 C-G WC 19-XIX cWW cW-W 5 A.G1510 A.C1493 G-C WC 19-XIX cWW cW-W 6 A.C1511 A.G1492 C-G WC 19-XIX cWW cW-W 7 A.G1512 A.A1491 G+A -- -- .WW .W+W 8 A.U1595 A.A1490 U-A WC 20-XX cWW cW-W 9 A.U1596 A.U1489 U-U -- 16-XVI cWW cW-W 10 A.C1597 A.G1488 C-G WC 19-XIX cWW cW-W 11 A.C1598 A.G1487 C-G WC 19-XIX cWW cW-W 12 A.U1599 A.G1486 U-G Wobble 28-XXVIII cWW cW-W 13 A.G1600 A.A1485 G-A -- -- tHW tM-W 14 A.A1601 A.U1484 A-U rHoogsteen 24-XXIV tHW tM-W 15 A.U1603 A.A1483 U-A WC 20-XX cWW cW-W 16 A.C1604 A.G1482 C-G WC 19-XIX cWW cW-W 17 A.C1605 A.G1481 C-G WC 19-XIX cWW cW-W 18 A.A1606 A.A1480 A-A -- -- cW. cW-. 19 A.A1608 A.G1479 A-G Imino 08-VIII cWW cW-W 20 A.C1609 A.G1478 C-G WC 19-XIX cWW cW-W 21 A.U1610 A.A1477 U-A WC 20-XX cWW cW-W 22 A.G1611 A.C1476 G-C WC 19-XIX cWW cW-W 23 A.C1612 A.G1475 C-G WC 19-XIX cWW cW-W 24 A.C1613 A.G1616 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#51[1] bps=4 strand-1 5'-AGGC-3' bp-type |||| strand-2 3'-UCCG-5' helix-form AAA 1 A.A1524 A.U1560 A-U WC 20-XX cWW cW-W 2 A.G1525 A.C1559 G-C WC 19-XIX cWW cW-W 3 A.G1526 A.C1558 G-C WC 19-XIX cWW cW-W 4 A.C1527 A.G1557 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#52[2] bps=8 strand-1 5'-GGGAAAGG-3' bp-type |||||||| strand-2 3'-CCCUUUCC-5' helix-form .AAAAxA 1 A.G1529 A.C1552 G-C WC 19-XIX cWW cW-W 2 A.G1530 A.C1551 G-C WC 19-XIX cWW cW-W 3 A.G1531 A.C1550 G-C WC 19-XIX cWW cW-W 4 A.A1532 A.U1549 A-U WC 20-XX cWW cW-W 5 A.A1533 A.U1548 A-U WC 20-XX cWW cW-W 6 A.A1534 A.U1547 A-U WC 20-XX cWW cW-W 7 A.G1537 A.C1545 G-C WC 19-XIX cWW cW-W 8 A.G1538 A.C1544 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#53[2] bps=15 strand-1 5'-AGCGUGAGGCGAGCG-3' bp-type ...||..|||..||. strand-2 3'-UGACAACCUGAGCGA-5' helix-form ..xx..xAx.x.A. 1 A.A1562 A.U1522 A+U -- -- tWW tW+W 2 A.G1563 A.G1521 G-G -- -- cWW cW-W 3 A.C1564 A.A1520 C-A ~Wobble -- cWW cW-W 4 A.G1566 A.C1519 G-C WC 19-XIX cWW cW-W 5 A.U1567 A.A1517 U-A WC 20-XX cWW cW-W 6 A.G1568 A.A1516 G+A -- -- tHH tM+M 7 A.A1569 A.C1515 A-C ~rHoogsteen -- tHW tM-W 8 A.G1571 A.C1514 G-C WC 19-XIX cWW cW-W 9 A.G1572 A.U1513 G-U Wobble 28-XXVIII cWW cW-W 10 A.C1573 A.G1594 C-G WC 19-XIX cWW cW-W 11 A.G1574 A.A1593 G-A Sheared 11-XI tSH tm-M 12 A.A1575 A.G1591 A-G Sheared 11-XI tHS tM-m 13 A.G1576 A.C1590 G-C WC 19-XIX cWW cW-W 14 A.C1577 A.G1589 C-G WC 19-XIX cWW cW-W 15 A.G1578 A.A1588 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#54[1] bps=3 strand-1 5'-ACC-3' bp-type .|| strand-2 3'-UGG-5' helix-form x. 1 A.A1653 A.U1666 A-U rHoogsteen 24-XXIV tHW tM-W 2 A.C1656 A.G1665 C-G WC 19-XIX cWW cW-W 3 A.C1657 A.G1664 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#55[3] bps=18 strand-1 5'-AAGAAGGCCCAGGCGCAA-3' bp-type .|||.||||||||||..| strand-2 3'-CUCUUCCGGGUCUGCAAU-5' helix-form ..xxxxAA....xAxxx 1 A.A1709 A.C2025 A+C -- -- ..W ..+W 2 A.A1710 A.U2024 A-U WC 20-XX cWW cW-W 3 A.G1711 A.C2023 G-C WC 19-XIX cWW cW-W 4 A.A1714 A.U2022 A-U WC 20-XX cWW cW-W 5 A.A1713 A.U2020 A-U rHoogsteen 24-XXIV tHW tM-W 6 A.G1719 A.C2019 G-C WC 19-XIX cWW cW-W 7 A.G1793 A.C2017 G-C WC 19-XIX cWW cW-W 8 A.C1794 A.G2016 C-G WC 19-XIX cWW cW-W 9 A.C1795 A.G2015 C-G WC 19-XIX cWW cW-W 10 A.C1796 A.G2014 C-G WC 19-XIX cWW cW-W 11 A.A1797 A.U2013 A-U WC 20-XX cWW cW-W 12 A.G1798 A.C2012 G-C WC 19-XIX cWW cW-W 13 A.G1799 A.U2011 G-U Wobble 28-XXVIII cWW cW-W 14 A.C1800 A.G2009 C-G WC 19-XIX cWW cW-W 15 A.G1801 A.C2008 G-C WC 19-XIX cWW cW-W 16 A.C2005 A.A2007 C+A -- -- cWH cW+M 17 A.A1802 A.A2006 A+A -- -- tSW tm+W 18 A.A1858 A.U1738 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#56[1] bps=10 strand-1 5'-ACCCCGAACU-3' bp-type |||||...|. strand-2 3'-UGGGGAAGGG-5' helix-form AAA..x... 1 A.A1727 A.U1751 A-U WC 20-XX cWW cW-W 2 A.C1728 A.G1750 C-G WC 19-XIX cWW cW-W 3 A.C1729 A.G1749 C-G WC 19-XIX cWW cW-W 4 A.C1730 A.G1748 C-G WC 19-XIX cWW cW-W 5 A.C1731 A.G1747 C-G WC 19-XIX cWW cW-W 6 A.G1732 A.A1746 G-A Sheared 11-XI tSH tm-M 7 A.A1734 A.A1743 A+A -- 02-II tHH tM+M 8 A.A1735 A.G1742 A-G Sheared 11-XI tHS tM-m 9 A.C1736 A.G1741 C-G WC 19-XIX cWW cW-W 10 A.U1737 A.G1740 U+G -- -- t.W t.+W -------------------------------------------------------------------------- helix#57[2] bps=14 strand-1 5'-AGCCCGAGAGAGCC-3' bp-type .||||...|||||| strand-2 3'-GUGGGAUGUCUCGG-5' helix-form ..AA..x.AA..x 1 A.A1768 A.G1765 A-G Sheared 11-XI tHS tM-m 2 A.G1769 A.U1764 G-U Wobble 28-XXVIII cWW cW-W 3 A.C1770 A.G1763 C-G WC 19-XIX cWW cW-W 4 A.C1771 A.G1762 C-G WC 19-XIX cWW cW-W 5 A.C1772 A.G1761 C-G WC 19-XIX cWW cW-W 6 A.G1773 A.A1760 G-A Sheared 11-XI tSH tm-M 7 A.A1774 A.U1759 A-U -- -- tHW tM-W 8 A.G1775 A.G1757 G-G -- -- tWH tW-M 9 A.A1776 A.U1756 A-U WC 20-XX cWW cW-W 10 A.G1777 A.C1755 G-C WC 19-XIX cWW cW-W 11 A.A1778 A.U1754 A-U WC 20-XX cWW cW-W 12 A.G1779 A.C1753 G-C WC 19-XIX cWW cW-W 13 A.C1780 A.G1752 C-G WC 19-XIX cWW cW-W 14 A.C1781 A.G1785 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#58[2] bps=9 strand-1 5'-CAGAACGUC-3' bp-type ..||||||| strand-2 3'-CGCUUGCAG-5' helix-form xxAA.xAA 1 A.C1811 A.C2615 C+C -- -- tWW tW+W 2 A.A1812 A.G2636 A-G -- -- cSS cm-m 3 A.G2617 A.C2635 G-C WC 19-XIX cWW cW-W 4 A.A2618 A.U2634 A-U WC 20-XX cWW cW-W 5 A.A2619 A.U2633 A-U WC 20-XX cWW cW-W 6 A.C2620 A.G2632 C-G WC 19-XIX cWW cW-W 7 A.G2621 A.C2630 G-C WC 19-XIX cWW cW-W 8 A.U2622 A.A2629 U-A WC 20-XX cWW cW-W 9 A.C2623 A.G2628 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#59[1] bps=8 strand-1 5'-AGGUCUCU-3' bp-type .||||||| strand-2 3'-GUCGGGGA-5' helix-form ....... 1 A.A1820 A.G1857 A-G Sheared 11-XI tHS tM-m 2 A.G1821 A.U1856 G-U Wobble 28-XXVIII cWW cW-W 3 A.G1822 A.C1855 G-C WC 19-XIX cWW cW-W 4 A.U1823 A.G1854 U-G Wobble 28-XXVIII cWW cW-W 5 A.C1824 A.G1853 C-G WC 19-XIX cWW cW-W 6 A.U1825 A.G1852 U-G Wobble 28-XXVIII cWW cW-W 7 A.C1826 A.G1851 C-G WC 19-XIX cWW cW-W 8 A.U1827 A.A1850 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#60[1] bps=7 strand-1 5'-CAAGCCG-3' bp-type ...|||. strand-2 3'-GAGCGGA-5' helix-form x...A. 1 A.C1829 A.G1846 C+G rWC 22-XXII tWW tW+W 2 A.A1831 A.A1844 A+A -- -- tHH tM+M 3 A.A1832 A.G1843 A-G Sheared 11-XI tHS tM-m 4 A.G1833 A.C1842 G-C WC 19-XIX cWW cW-W 5 A.C1834 A.G1841 C-G WC 19-XIX cWW cW-W 6 A.C1835 A.G1840 C-G WC 19-XIX cWW cW-W 7 A.G1836 A.A1839 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#61[2] bps=7 strand-1 5'-GCUGAGU-3' bp-type .|||.|| strand-2 3'-CGACCCG-5' helix-form xAxxx. 1 A.G1871 A.C1867 G+C -- -- cHW cM+W 2 A.C1872 A.G1926 C-G WC 19-XIX cWW cW-W 3 A.U1873 A.A1925 U-A WC 20-XX cWW cW-W 4 A.G1875 A.C1924 G-C WC 19-XIX cWW cW-W 5 A.A1877 A.C1922 A-C -- -- cWW cW-W 6 A.G1879 A.C1921 G-C WC 19-XIX cWW cW-W 7 A.U1880 A.G1920 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- helix#62[1] bps=7 strand-1 5'-AGAGGAC-3' bp-type .||.... strand-2 3'-GUUAAGC-5' helix-form .....x 1 A.A1883 A.G1917 A-G -- -- tHS tM-m 2 A.G1884 A.U1916 G-U Wobble 28-XXVIII cWW cW-W 3 A.A1885 A.U1915 A-U WC 20-XX cWW cW-W 4 A.G1886 A.A1914 G-A -- -- .SH .m-M 5 A.G1887 A.A1913 G-A -- -- tSH tm-M 6 A.A1888 A.G1912 A-G Sheared 11-XI tHS tM-m 7 A.C1890 A.C1911 C-C -- -- cWW cW-W -------------------------------------------------------------------------- helix#63[0] bps=8 strand-1 5'-AAUGAAUA-3' bp-type .|.|.|.| strand-2 3'-UUCCGUGU-5' helix-form x.A.xx. 1 A.A2059 A.U612 A-U -- -- cW. cW-. 2 A.A619 A.U610 A-U WC 20-XX cWW cW-W 3 A.U620 A.C609 U-C -- 18-XVIII cWW cW-W 4 A.G621 A.C608 G-C WC 19-XIX cWW cW-W 5 A.A622 A.G607 A-G Imino 08-VIII cWW cW-W 6 A.A2047 A.U577 A-U WC 20-XX cWW cW-W 7 A.U2048 A.G2064 U-G -- -- cWW cW-W 8 A.A2049 A.U2063 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#64[2] bps=6 strand-1 5'-GGAGCU-3' bp-type |||||| strand-2 3'-CCUCGA-5' helix-form Ax... 1 A.G2098 A.C2471 G-C WC 19-XIX cWW cW-W 2 A.G2099 A.C2470 G-C WC 19-XIX cWW cW-W 3 A.A2100 A.U2467 A-U WC 20-XX cWW cW-W 4 A.G2101 A.C2466 G-C WC 19-XIX cWW cW-W 5 A.C2102 A.G2465 C-G WC 19-XIX cWW cW-W 6 A.U2103 A.A2464 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#65[3] bps=13 strand-1 5'-ACUGCGCCGAUAU-3' bp-type |||||.||||||| strand-2 3'-UGACGGGGCUGUG-5' helix-form ....xx.x.... 1 A.A2106 A.U2272 A-U WC 20-XX cWW cW-W 2 A.C2107 A.G2271 C-G WC 19-XIX cWW cW-W 3 A.U2108 A.A2270 U-A WC 20-XX cWW cW-W 4 A.G2109 A.C2269 G-C WC 19-XIX cWW cW-W 5 A.C2110 A.G2268 C-G WC 19-XIX cWW cW-W 6 A.G2112 A.G2266 G-G ~Sheared -- tHS tM-m 7 A.C2113 A.G2264 C-G WC 19-XIX cWW cW-W 8 A.C2114 A.G2263 C-G WC 19-XIX cWW cW-W 9 A.G2116 A.C2261 G-C WC 19-XIX cWW cW-W 10 A.A2117 A.U2260 A-U WC 20-XX cWW cW-W 11 A.U2118 A.G2259 U-G Wobble 28-XXVIII cWW cW-W 12 A.A2119 A.U2258 A-U WC 20-XX cWW cW-W 13 A.U2120 A.G2257 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- helix#66[1] bps=5 strand-1 5'-GCCUU-3' bp-type ||... strand-2 3'-CGGAG-5' helix-form .... 1 A.G2156 A.C2190 G-C WC 19-XIX cWW cW-W 2 A.C2157 A.G2189 C-G WC 19-XIX cWW cW-W 3 A.C2158 A.G2188 C-G ~Sheared -- tSH tm-M 4 A.U2159 A.A2187 U-A -- -- .SH .m-M 5 A.U2160 A.G2186 U-G -- -- .SW .m-W -------------------------------------------------------------------------- helix#67[0] bps=2 strand-1 5'-GG-3' bp-type .. strand-2 3'-AA-5' helix-form x 1 A.G2162 A.A2165 G-A -- -- cHH cM-M 2 A.G2185 A.A2164 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#68[1] bps=5 strand-1 5'-CGGGC-3' bp-type .|.|| strand-2 3'-GCUCG-5' helix-form .xx. 1 A.C2167 A.G2182 C-G -- -- cWW cW-W 2 A.G2168 A.C2181 G-C WC 19-XIX cWW cW-W 3 A.G2169 A.U2179 G-U sWobble -- cWW cW-W 4 A.G2171 A.C2178 G-C WC 19-XIX cWW cW-W 5 A.C2172 A.G2177 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#69[1] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form . 1 A.C2289 A.G2309 C-G WC 19-XIX cWW cW-W 2 A.C2290 A.G2308 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#70[0] bps=5 strand-1 5'-UUCCC-3' bp-type ....| strand-2 3'-CGAGG-5' helix-form ...x 1 A.U2320 A.C2371 U-C -- -- cWW cW-W 2 A.U2321 A.G2370 U+G ~Hoogsteen -- cWH cW+M 3 A.C2322 A.A2369 C-A -- -- cWW cW-W 4 A.C2323 A.G2368 C+G -- -- .WW .W+W 5 A.C2324 A.G2366 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#71[0] bps=4 strand-1 5'-CAAU-3' bp-type |.|| strand-2 3'-GCUA-5' helix-form xxx 1 A.C2326 A.G2350 C-G WC 19-XIX cWW cW-W 2 A.A2327 A.C2346 A-C -- -- tHW tM-W 3 A.A2329 A.U2344 A-U WC 20-XX cWW cW-W 4 A.U2331 A.A2343 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- helix#72[1] bps=4 strand-1 5'-CUGC-3' bp-type ||.| strand-2 3'-GAAG-5' helix-form .xx 1 A.C2376 A.G2399 C-G WC 19-XIX cWW cW-W 2 A.U2377 A.A2398 U-A WC 20-XX cWW cW-W 3 A.G2378 A.A690 G+A -- -- tSW tm+W 4 A.C2379 A.G2396 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#73[1] bps=3 strand-1 5'-ACC-3' bp-type ||. strand-2 3'-UGA-5' helix-form .. 1 A.A2383 A.U2392 A-U WC 20-XX cWW cW-W 2 A.C2384 A.G2391 C-G WC 19-XIX cWW cW-W 3 A.C2385 A.A2390 C-A -- -- .WW .W-W -------------------------------------------------------------------------- helix#74[0] bps=2 strand-1 5'-GG-3' bp-type .. strand-2 3'-GC-5' helix-form . 1 A.G2425 A.G2450 G+G -- 06-VI cWH cW+M 2 A.G2426 A.C2449 G-C -- -- tWH tW-M -------------------------------------------------------------------------- helix#75[0] bps=3 strand-1 5'-UGU-3' bp-type ... strand-2 3'-UAC-5' helix-form x. 1 A.U2427 A.U2448 U-U -- 16-XVI cWW cW-W 2 A.G2429 A.A2447 G-A -- -- cWW cW-W 3 A.U2430 A.C2446 U-C -- 18-XVIII cWW cW-W -------------------------------------------------------------------------- helix#76[1] bps=3 strand-1 5'-CCG-3' bp-type ||. strand-2 3'-GGA-5' helix-form A. 1 A.C2432 A.G2443 C-G WC 19-XIX cWW cW-W 2 A.C2433 A.G2442 C-G WC 19-XIX cWW cW-W 3 A.G2434 A.A2441 G-A Sheared 11-XI tSH tm-M -------------------------------------------------------------------------- helix#77[0] bps=2 strand-1 5'-CU-3' bp-type |. strand-2 3'-GG-5' helix-form . 1 A.C2490 A.G2519 C-G WC 19-XIX cWW cW-W 2 A.U2491 A.G2518 U-G -- -- cWW cW-W -------------------------------------------------------------------------- helix#78[0] bps=2 strand-1 5'-CC-3' bp-type .| strand-2 3'-AG-5' helix-form . 1 A.C2493 A.A2517 C-A ~Wobble -- cWW cW-W 2 A.C2494 A.G2516 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#79[1] bps=5 strand-1 5'-AUCGC-3' bp-type ||||| strand-2 3'-UGGCG-5' helix-form .... 1 A.A2542 A.U2600 A-U WC 20-XX cWW cW-W 2 A.U2543 A.G2599 U-G Wobble 28-XXVIII cWW cW-W 3 A.C2544 A.G2598 C-G WC 19-XIX cWW cW-W 4 A.G2545 A.C2597 G-C WC 19-XIX cWW cW-W 5 A.C2546 A.G2596 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#80[3] bps=18 strand-1 5'-UCGGGGAUCCAAUGGGCU-3' bp-type .|||||.|||..|||||. strand-2 5'-GGUCCCAGGGUUACCCGC-3' helix-form .....xx..xxx..... 1 A.U2557 A.G2564 U-G -- -- cWW cW-W 2 A.C2556 A.G2565 C-G WC 19-XIX cWW cW-W 3 A.G2555 A.U2566 G-U Wobble 28-XXVIII cWW cW-W 4 A.G2554 A.C2567 G-C WC 19-XIX cWW cW-W 5 A.G2553 A.C2568 G-C WC 19-XIX cWW cW-W 6 A.G2552 A.C2569 G-C WC 19-XIX cWW cW-W 7 A.A2794 A.A2570 A-A -- -- cWS cW-m 8 A.U2551 A.G2572 U-G Wobble 28-XXVIII cWW cW-W 9 A.C2550 A.G2573 C-G WC 19-XIX cWW cW-W 10 A.C2549 A.G2574 C-G WC 19-XIX cWW cW-W 11 A.A2594 A.U2575 A+U -- -- tWS tW+m 12 A.A2595 A.U2591 A-U rHoogsteen 24-XXIV tHW tM-W 13 A.U2576 A.A2590 U-A WC 20-XX cWW cW-W 14 A.G2577 A.C2589 G-C WC 19-XIX cWW cW-W 15 A.G2578 A.C2588 G-C WC 19-XIX cWW cW-W 16 A.G2579 A.C2587 G-C WC 19-XIX cWW cW-W 17 A.C2580 A.G2586 C-G WC 19-XIX cWW cW-W 18 A.U2581 A.C2585 U-C -- -- tWH tW-M -------------------------------------------------------------------------- helix#81[3] bps=15 strand-1 5'-CCUCCGUCGCGGGCG-3' bp-type ||||||||||||||. strand-2 3'-GGAGGCAGCGCCCGA-5' helix-form .xAAx..AA.AAxx 1 A.C2640 A.G2086 C-G WC 19-XIX cWW cW-W 2 A.C2641 A.G2085 C-G WC 19-XIX cWW cW-W 3 A.U2644 A.A2083 U-A WC 20-XX cWW cW-W 4 A.C2645 A.G2082 C-G WC 19-XIX cWW cW-W 5 A.C2646 A.G2081 C-G WC 19-XIX cWW cW-W 6 A.G2647 A.C2079 G-C WC 19-XIX cWW cW-W 7 A.U2648 A.A2078 U-A WC 20-XX cWW cW-W 8 A.C2649 A.G2077 C-G WC 19-XIX cWW cW-W 9 A.G2650 A.C2076 G-C WC 19-XIX cWW cW-W 10 A.C2651 A.G2075 C-G WC 19-XIX cWW cW-W 11 A.G2652 A.C2074 G-C WC 19-XIX cWW cW-W 12 A.G2653 A.C2073 G-C WC 19-XIX cWW cW-W 13 A.G2654 A.C2072 G-C WC 19-XIX cWW cW-W 14 A.C2655 A.G2806 C-G WC 19-XIX cWW cW-W 15 A.G2656 A.A2810 G+A Linker -- tS. tm+. -------------------------------------------------------------------------- helix#82[5] bps=38 strand-1 5'-GGGCGGGAUGGACGCACUGGUGAGCCAGUUGUUCUUGG-3' bp-type |....||||||.|||||||||...|||||||||||.|. strand-2 3'-CAUAUCCUGUCGGCGUGAUCGAUGGGUCGACGGGACCG-5' helix-form .xxxA.AA..x.AAAAx....x.xAAA.xA....x.. 1 A.G2692 A.C2687 G-C WC 19-XIX cWW cW-W 2 A.G2693 A.A2686 G-A Sheared 11-XI tSH tm-M 3 A.G2684 A.U2685 G+U Platform -- cSH cm+M 4 A.C2696 A.A2683 C+A -- -- cWH cW+M 5 A.G2697 A.U2681 G-U -- -- cWW cW-W 6 A.G2698 A.C2680 G-C WC 19-XIX cWW cW-W 7 A.G2699 A.C2679 G-C WC 19-XIX cWW cW-W 8 A.A2700 A.U2678 A-U WC 20-XX cWW cW-W 9 A.U2701 A.G2677 U-G Wobble 28-XXVIII cWW cW-W 10 A.G2702 A.U2676 G-U Wobble 28-XXVIII cWW cW-W 11 A.G2703 A.C2675 G-C WC 19-XIX cWW cW-W 12 A.A2704 A.G2761 A-G Imino 08-VIII cWW cW-W 13 A.C2705 A.G2760 C-G WC 19-XIX cWW cW-W 14 A.G2706 A.C2759 G-C WC 19-XIX cWW cW-W 15 A.C2707 A.G2758 C-G WC 19-XIX cWW cW-W 16 A.A2708 A.U2757 A-U WC 20-XX cWW cW-W 17 A.C2709 A.G2756 C-G WC 19-XIX cWW cW-W 18 A.U2713 A.A2754 U-A WC 20-XX cWW cW-W 19 A.G2714 A.U2753 G-U Wobble 28-XXVIII cWW cW-W 20 A.G2715 A.C2752 G-C WC 19-XIX cWW cW-W 21 A.U2716 A.G2751 U-G Wobble 28-XXVIII cWW cW-W 22 A.G2717 A.A2750 G-A Sheared 11-XI tSH tm-M 23 A.A2898 A.U2749 A+U Hoogsteen 23-XXIII cHW cM+W 24 A.G2897 A.G2748 G+G -- -- tW. tW+. 25 A.C2720 A.G2747 C-G WC 19-XIX cWW cW-W 26 A.C2721 A.G2746 C-G WC 19-XIX cWW cW-W 27 A.A2722 A.U2745 A-U WC 20-XX cWW cW-W 28 A.G2723 A.C2744 G-C WC 19-XIX cWW cW-W 29 A.U2724 A.G2743 U-G Wobble 28-XXVIII cWW cW-W 30 A.U2725 A.A2740 U-A WC 20-XX cWW cW-W 31 A.G2726 A.C2739 G-C WC 19-XIX cWW cW-W 32 A.U2727 A.G2738 U-G Wobble 28-XXVIII cWW cW-W 33 A.U2728 A.G2737 U-G Wobble 28-XXVIII cWW cW-W 34 A.C2729 A.G2736 C-G WC 19-XIX cWW cW-W 35 A.U2730 A.A2735 U-A WC 20-XX cWW cW-W 36 A.U1501 A.C2733 U-C -- 18-XVIII cWW cW-W 37 A.G1502 A.C2732 G-C WC 19-XIX cWW cW-W 38 A.G1503 A.G2731 G+G -- 06-VI .HW .M+W -------------------------------------------------------------------------- helix#83[4] bps=31 strand-1 5'-CAUAAGCAUGAGCCCCCCUCAAAGAUUUCCC-3' bp-type .....||||...|||.||||...|||||||| strand-2 3'-AAAGUCGUGAUAGGGCGGAGAGUUUAAAGGG-5' helix-form ..xxxA...xx..A.xAAA.xxx.AAA.Ax 1 A.C2781 A.A2779 C+A -- -- tWS tW+m 2 A.A2782 A.A2778 A-A -- -- tWH tW-M 3 A.U2783 A.A2777 U-A -- -- tWH tW-M 4 A.A2786 A.G2776 A-G Sheared 11-XI tHS tM-m 5 A.A2787 A.U2785 A+U Hoogsteen 23-XXIII cHW cM+W 6 A.G2788 A.C2774 G-C WC 19-XIX cWW cW-W 7 A.C2789 A.G2773 C-G WC 19-XIX cWW cW-W 8 A.A2790 A.U2772 A-U WC 20-XX cWW cW-W 9 A.U2791 A.G2771 U-G Wobble 28-XXVIII cWW cW-W 10 A.G2792 A.A2770 G-A Sheared 11-XI tSH tm-M 11 A.A2793 A.U2768 A-U rHoogsteen 24-XXIV tHW tM-W 12 A.G2795 A.A2767 G+A -- -- ..W ..+W 13 A.C2796 A.G2766 C-G WC 19-XIX cWW cW-W 14 A.C2797 A.G2765 C-G WC 19-XIX cWW cW-W 15 A.C2798 A.G2764 C-G WC 19-XIX cWW cW-W 16 A.C2799 A.C2763 C-C -- -- cWW cW-W 17 A.C2800 A.G2672 C-G WC 19-XIX cWW cW-W 18 A.C2801 A.G2671 C-G WC 19-XIX cWW cW-W 19 A.U2802 A.A2670 U-A WC 20-XX cWW cW-W 20 A.C2803 A.G2669 C-G WC 19-XIX cWW cW-W 21 A.A2804 A.A2668 A-A ~Sheared -- tSH tm-M 22 A.A2807 A.G2667 A-G Sheared 11-XI tHS tM-m 23 A.A2805 A.U2666 A-U rHoogsteen 24-XXIV tHW tM-W 24 A.G2811 A.U2665 G-U Wobble 28-XXVIII cWW cW-W 25 A.A2812 A.U2664 A-U WC 20-XX cWW cW-W 26 A.U2813 A.A2663 U-A WC 20-XX cWW cW-W 27 A.U2814 A.A2662 U-A WC 20-XX cWW cW-W 28 A.U2815 A.A2661 U-A WC 20-XX cWW cW-W 29 A.C2816 A.G2660 C-G WC 19-XIX cWW cW-W 30 A.C2817 A.G2659 C-G WC 19-XIX cWW cW-W 31 A.C2818 A.G2918 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#84[3] bps=18 strand-1 5'-AGGAAGUAGAUCCCUGAA-3' bp-type .||||...|||||||||. strand-2 3'-GCCUUGAGCUAGGGACUA-5' helix-form .AAAx.x.AA.xA..Ax 1 A.A2827 A.G2824 A-G Sheared 11-XI tHS tM-m 2 A.G2828 A.C2823 G-C WC 19-XIX cWW cW-W 3 A.G2829 A.C2822 G-C WC 19-XIX cWW cW-W 4 A.A2830 A.U2821 A-U WC 20-XX cWW cW-W 5 A.A2831 A.U2820 A-U WC 20-XX cWW cW-W 6 A.G2832 A.G2917 G-G -- -- .WH .W-M 7 A.U2833 A.A2916 U-A rHoogsteen 24-XXIV tWH tW-M 8 A.A2835 A.G2915 A-G Sheared 11-XI tHS tM-m 9 A.G2836 A.C2914 G-C WC 19-XIX cWW cW-W 10 A.A2837 A.U2913 A-U WC 20-XX cWW cW-W 11 A.U2838 A.A2912 U-A WC 20-XX cWW cW-W 12 A.C2839 A.G2911 C-G WC 19-XIX cWW cW-W 13 A.C2840 A.G2856 C-G WC 19-XIX cWW cW-W 14 A.C2841 A.G2855 C-G WC 19-XIX cWW cW-W 15 A.U2842 A.A2854 U-A WC 20-XX cWW cW-W 16 A.G2843 A.C2853 G-C WC 19-XIX cWW cW-W 17 A.A2844 A.U2852 A-U WC 20-XX cWW cW-W 18 A.A2846 A.A2851 A-A -- -- cSW cm-W -------------------------------------------------------------------------- helix#85[4] bps=20 strand-1 5'-GUAGGUCUGGGUGGGUGUGG-3' bp-type .|||||||||||..|||||. strand-2 3'-AAUCUAGACUCGAGUACACA-5' helix-form xAAx.AA.x...xx.AAA. 1 A.G2859 A.A2908 G-A Sheared 11-XI tSH tm-M 2 A.U2861 A.A2907 U-A WC 20-XX cWW cW-W 3 A.A2862 A.U2906 A-U WC 20-XX cWW cW-W 4 A.G2863 A.C2905 G-C WC 19-XIX cWW cW-W 5 A.G2864 A.U2903 G-U Wobble 28-XXVIII cWW cW-W 6 A.U2865 A.A2902 U-A WC 20-XX cWW cW-W 7 A.C2866 A.G2901 C-G WC 19-XIX cWW cW-W 8 A.U2867 A.A2900 U-A WC 20-XX cWW cW-W 9 A.G2868 A.C2899 G-C WC 19-XIX cWW cW-W 10 A.G2870 A.U2896 G-U Wobble 28-XXVIII cWW cW-W 11 A.G2871 A.C2895 G-C WC 19-XIX cWW cW-W 12 A.U2872 A.G2894 U-G Wobble 28-XXVIII cWW cW-W 13 A.G2873 A.A2893 G-A Sheared 11-XI tSH tm-M 14 A.G2874 A.G2891 G+G -- 04-IV tSS tm+m 15 A.G2877 A.U2890 G-U Wobble 28-XXVIII cWW cW-W 16 A.U2878 A.A2889 U-A WC 20-XX cWW cW-W 17 A.G2879 A.C2888 G-C WC 19-XIX cWW cW-W 18 A.U2880 A.A2887 U-A WC 20-XX cWW cW-W 19 A.G2881 A.C2886 G-C WC 19-XIX cWW cW-W 20 A.G2882 A.A2885 G-A -- -- tSH tm-M -------------------------------------------------------------------------- helix#86[1] bps=7 strand-1 5'-UGGUGGC-3' bp-type ||||||| strand-2 3'-ACCGCCG-5' helix-form ....AA 1 B.U3 B.A113 U-A WC 20-XX cWW cW-W 2 B.G4 B.C112 G-C WC 19-XIX cWW cW-W 3 B.G5 B.C111 G-C WC 19-XIX cWW cW-W 4 B.U6 B.G110 U-G Wobble 28-XXVIII cWW cW-W 5 B.G7 B.C109 G-C WC 19-XIX cWW cW-W 6 B.G8 B.C108 G-C WC 19-XIX cWW cW-W 7 B.C9 B.G107 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#87[5] bps=33 strand-1 5'-CUGGGUUGCUCUUCGCCCGAUGGUAGUCGGGGG-3' bp-type |.||.|..||||||||||........|.||||| strand-2 3'-GGCCCACGGAGAAGCGGGAUGAGAGUGUCCCCC-5' helix-form xx.x..x...AA.xAxA...........AAAA 1 B.C36 B.G42 C-G WC 19-XIX cWW cW-W 2 B.U33 B.G31 U+G -- -- cHS cM+m 3 B.G48 B.C30 G-C WC 19-XIX cWW cW-W 4 B.G49 B.C29 G-C WC 19-XIX cWW cW-W 5 B.G52 B.C28 G-C -- -- cWW cW-W 6 B.U53 B.A27 U-A WC 20-XX cWW cW-W 7 B.U54 B.C26 U-C -- -- cWW cW-W 8 B.G57 B.G22 G-G -- -- c.W c.-W 9 B.C58 B.G21 C-G WC 19-XIX cWW cW-W 10 B.U59 B.A20 U-A WC 20-XX cWW cW-W 11 B.C60 B.G19 C-G WC 19-XIX cWW cW-W 12 B.U61 B.A18 U-A WC 20-XX cWW cW-W 13 B.U62 B.A17 U-A WC 20-XX cWW cW-W 14 B.C63 B.G16 C-G WC 19-XIX cWW cW-W 15 B.G65 B.C15 G-C WC 19-XIX cWW cW-W 16 B.C66 B.G14 C-G WC 19-XIX cWW cW-W 17 B.C68 B.G104 C-G WC 19-XIX cWW cW-W 18 B.C69 B.G103 C-G WC 19-XIX cWW cW-W 19 B.G70 B.A102 G-A Sheared 11-XI tSH tm-M 20 B.A71 B.U101 A-U rHoogsteen 24-XXIV tHW tM-W 21 B.U72 B.G100 U-G -- -- c.W c.-W 22 B.G73 B.A99 G-A -- -- cWW cW-W 23 B.G74 B.G98 G-G -- -- tWH tW-M 24 B.U75 B.A97 U-A rHoogsteen 24-XXIV tWH tW-M 25 B.A76 B.G96 A-G Sheared 11-XI tHS tM-m 26 B.G77 B.U95 G-U -- -- cWW cW-W 27 B.U78 B.G94 U-G Wobble 28-XXVIII cWW cW-W 28 B.C79 B.U93 C-U -- 18-XVIII cWW cW-W 29 B.G80 B.C92 G-C WC 19-XIX cWW cW-W 30 B.G81 B.C91 G-C WC 19-XIX cWW cW-W 31 B.G82 B.C90 G-C WC 19-XIX cWW cW-W 32 B.G83 B.C89 G-C WC 19-XIX cWW cW-W 33 B.G84 B.C88 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- helix#88[0] bps=2 strand-1 5'-AU-3' bp-type .. strand-2 5'-AC-3' helix-form x 1 B.A37 B.A39 A-A -- -- cWW cW-W 2 B.U38 B.C45 U-C -- -- tHW tM-W **************************************************************************** List of 165 stems Note: A stem is defined as a helix consisting strictly of canonical WC/wobble pairs with a continuous backbone. stem#number[#helix-number containing this stem] Other terms are defined as in the above Helix section. -------------------------------------------------------------------- stem#1[#1] bps=6 strand-1 5'-UUAAGU-3' bp-type |||||| strand-2 3'-AAUUCA-5' helix-form .AAAA 1 A.U3 A.A2924 U-A WC 20-XX cWW cW-W 2 A.U4 A.A2923 U-A WC 20-XX cWW cW-W 3 A.A5 A.U2922 A-U WC 20-XX cWW cW-W 4 A.A6 A.U2921 A-U WC 20-XX cWW cW-W 5 A.G7 A.C2920 G-C WC 19-XIX cWW cW-W 6 A.U8 A.A2919 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#2[#2] bps=10 strand-1 5'-GGGCGCACGG-3' bp-type |||||||||| strand-2 3'-UCCGUGUGCC-5' helix-form .AA..AA.A 1 A.G15 A.U571 G-U Wobble 28-XXVIII cWW cW-W 2 A.G16 A.C570 G-C WC 19-XIX cWW cW-W 3 A.G17 A.C569 G-C WC 19-XIX cWW cW-W 4 A.C18 A.G568 C-G WC 19-XIX cWW cW-W 5 A.G19 A.U567 G-U Wobble 28-XXVIII cWW cW-W 6 A.C20 A.G566 C-G WC 19-XIX cWW cW-W 7 A.A21 A.U565 A-U WC 20-XX cWW cW-W 8 A.C22 A.G564 C-G WC 19-XIX cWW cW-W 9 A.G23 A.C563 G-C WC 19-XIX cWW cW-W 10 A.G24 A.C562 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#3[#2] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 A.C31 A.G521 C-G WC 19-XIX cWW cW-W 2 A.C32 A.G520 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#4[#2] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form . 1 A.G35 A.C492 G-C WC 19-XIX cWW cW-W 2 A.G36 A.C491 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#5[#2] bps=7 strand-1 5'-CACUAGG-3' bp-type ||||||| strand-2 3'-GUGAUCC-5' helix-form A..AA. 1 A.C37 A.G489 C-G WC 19-XIX cWW cW-W 2 A.A38 A.U488 A-U WC 20-XX cWW cW-W 3 A.C39 A.G487 C-G WC 19-XIX cWW cW-W 4 A.U40 A.A486 U-A WC 20-XX cWW cW-W 5 A.A41 A.U485 A-U WC 20-XX cWW cW-W 6 A.G42 A.C484 G-C WC 19-XIX cWW cW-W 7 A.G43 A.C483 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#6[#2] bps=2 strand-1 5'-AG-3' bp-type || strand-2 3'-UC-5' helix-form . 1 A.A44 A.U481 A-U WC 20-XX cWW cW-W 2 A.G45 A.C480 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#7[#3] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 A.C46 A.G181 C-G WC 19-XIX cWW cW-W 2 A.C47 A.G180 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#8[#4] bps=3 strand-1 5'-GGA-3' bp-type ||| strand-2 3'-CCU-5' helix-form .A 1 A.G54 A.C115 G-C WC 19-XIX cWW cW-W 2 A.G55 A.C114 G-C WC 19-XIX cWW cW-W 3 A.A56 A.U113 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#9[#4] bps=3 strand-1 5'-CGG-3' bp-type ||| strand-2 3'-GCC-5' helix-form A. 1 A.C57 A.G70 C-G WC 19-XIX cWW cW-W 2 A.G58 A.C69 G-C WC 19-XIX cWW cW-W 3 A.G59 A.C68 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#10[#4] bps=2 strand-1 5'-AC-3' bp-type || strand-2 3'-UG-5' helix-form A 1 A.A65 A.U89 A-U WC 20-XX cWW cW-W 2 A.C66 A.G88 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#11[#5] bps=6 strand-1 5'-CUUCGG-3' bp-type |||||| strand-2 3'-GAGGCC-5' helix-form .AA.A 1 A.C76 A.G109 C-G WC 19-XIX cWW cW-W 2 A.U77 A.A108 U-A WC 20-XX cWW cW-W 3 A.U78 A.G107 U-G Wobble 28-XXVIII cWW cW-W 4 A.C79 A.G106 C-G WC 19-XIX cWW cW-W 5 A.G80 A.C105 G-C WC 19-XIX cWW cW-W 6 A.G81 A.C104 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#12[#6] bps=3 strand-1 5'-GCU-3' bp-type ||| strand-2 3'-CGA-5' helix-form A. 1 A.G85 A.C97 G-C WC 19-XIX cWW cW-W 2 A.C86 A.G96 C-G WC 19-XIX cWW cW-W 3 A.U87 A.A95 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#13[#7] bps=3 strand-1 5'-GGG-3' bp-type ||| strand-2 3'-CCC-5' helix-form AA 1 A.G120 A.C129 G-C WC 19-XIX cWW cW-W 2 A.G121 A.C128 G-C WC 19-XIX cWW cW-W 3 A.G122 A.C127 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#14[#7] bps=7 strand-1 5'-ACCACUC-3' bp-type ||||||| strand-2 3'-UGGUGAG-5' helix-form AAAAAA 1 A.A130 A.U149 A-U WC 20-XX cWW cW-W 2 A.C131 A.G148 C-G WC 19-XIX cWW cW-W 3 A.C132 A.G147 C-G WC 19-XIX cWW cW-W 4 A.A133 A.U146 A-U WC 20-XX cWW cW-W 5 A.C134 A.G145 C-G WC 19-XIX cWW cW-W 6 A.U135 A.A144 U-A WC 20-XX cWW cW-W 7 A.C136 A.G143 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#15[#8] bps=6 strand-1 5'-CAUAUC-3' bp-type |||||| strand-2 3'-GUAUAG-5' helix-form .AAAA 1 A.C153 A.G175 C-G WC 19-XIX cWW cW-W 2 A.A154 A.U174 A-U WC 20-XX cWW cW-W 3 A.U155 A.A173 U-A WC 20-XX cWW cW-W 4 A.A156 A.U172 A-U WC 20-XX cWW cW-W 5 A.U157 A.A171 U-A WC 20-XX cWW cW-W 6 A.C158 A.G170 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#16[#9] bps=5 strand-1 5'-CCGGG-3' bp-type ||||| strand-2 3'-GGCCC-5' helix-form AAAA 1 A.C187 A.G215 C-G WC 19-XIX cWW cW-W 2 A.C188 A.G214 C-G WC 19-XIX cWW cW-W 3 A.G189 A.C213 G-C WC 19-XIX cWW cW-W 4 A.G190 A.C212 G-C WC 19-XIX cWW cW-W 5 A.G191 A.C211 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#17[#10] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form A 1 A.G227 A.C234 G-C WC 19-XIX cWW cW-W 2 A.C228 A.G233 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#18[#11] bps=4 strand-1 5'-UCCC-3' bp-type |||| strand-2 3'-AGGG-5' helix-form A.A 1 A.U238 A.A265 U-A WC 20-XX cWW cW-W 2 A.C239 A.G264 C-G WC 19-XIX cWW cW-W 3 A.C240 A.G263 C-G WC 19-XIX cWW cW-W 4 A.C241 A.G262 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#19[#11] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form A 1 A.G248 A.C256 G-C WC 19-XIX cWW cW-W 2 A.C249 A.G255 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#20[#12] bps=3 strand-1 5'-GCC-3' bp-type ||| strand-2 3'-CGG-5' helix-form .A 1 A.G269 A.C473 G-C WC 19-XIX cWW cW-W 2 A.C270 A.G472 C-G WC 19-XIX cWW cW-W 3 A.C271 A.G471 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#21[#12] bps=4 strand-1 5'-CCAA-3' bp-type |||| strand-2 3'-GGUU-5' helix-form A.A 1 A.C276 A.G295 C-G WC 19-XIX cWW cW-W 2 A.C277 A.G294 C-G WC 19-XIX cWW cW-W 3 A.A278 A.U293 A-U WC 20-XX cWW cW-W 4 A.A279 A.U292 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#22[#12] bps=3 strand-1 5'-AGG-3' bp-type ||| strand-2 3'-UCC-5' helix-form .. 1 A.A281 A.U290 A-U WC 20-XX cWW cW-W 2 A.G282 A.C289 G-C WC 19-XIX cWW cW-W 3 A.G283 A.C288 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#23[#16] bps=4 strand-1 5'-AGGA-3' bp-type |||| strand-2 3'-UCCU-5' helix-form ..A 1 A.A302 A.U416 A-U WC 20-XX cWW cW-W 2 A.G303 A.C415 G-C WC 19-XIX cWW cW-W 3 A.G304 A.C414 G-C WC 19-XIX cWW cW-W 4 A.A305 A.U413 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#24[#16] bps=5 strand-1 5'-CACUC-3' bp-type ||||| strand-2 3'-GUGAG-5' helix-form AAAA 1 A.C306 A.G410 C-G WC 19-XIX cWW cW-W 2 A.A307 A.U409 A-U WC 20-XX cWW cW-W 3 A.C308 A.G408 C-G WC 19-XIX cWW cW-W 4 A.U309 A.A407 U-A WC 20-XX cWW cW-W 5 A.C310 A.G406 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#25[#13] bps=4 strand-1 5'-GGAG-3' bp-type |||| strand-2 3'-CCUC-5' helix-form AAA 1 A.G316 A.C404 G-C WC 19-XIX cWW cW-W 2 A.G317 A.C403 G-C WC 19-XIX cWW cW-W 3 A.A318 A.U402 A-U WC 20-XX cWW cW-W 4 A.G319 A.C401 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#26[#13] bps=7 strand-1 5'-GGAACGA-3' bp-type ||||||| strand-2 3'-UCUUGCU-5' helix-form .AA..A 1 A.G327 A.U400 G-U Wobble 28-XXVIII cWW cW-W 2 A.G328 A.C399 G-C WC 19-XIX cWW cW-W 3 A.A329 A.U398 A-U WC 20-XX cWW cW-W 4 A.A330 A.U397 A-U WC 20-XX cWW cW-W 5 A.C331 A.G396 C-G WC 19-XIX cWW cW-W 6 A.G332 A.C395 G-C WC 19-XIX cWW cW-W 7 A.A333 A.U394 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#27[#13] bps=2 strand-1 5'-GU-3' bp-type || strand-2 3'-CA-5' helix-form A 1 A.G335 A.C392 G-C WC 19-XIX cWW cW-W 2 A.U336 A.A391 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#28[#14] bps=3 strand-1 5'-GAU-3' bp-type ||| strand-2 3'-CUG-5' helix-form .. 1 A.G338 A.C387 G-C WC 19-XIX cWW cW-W 2 A.A339 A.U386 A-U WC 20-XX cWW cW-W 3 A.U340 A.G385 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#29[#15] bps=4 strand-1 5'-GGUC-3' bp-type |||| strand-2 3'-CCGG-5' helix-form A.. 1 A.G346 A.C359 G-C WC 19-XIX cWW cW-W 2 A.G347 A.C358 G-C WC 19-XIX cWW cW-W 3 A.U348 A.G357 U-G Wobble 28-XXVIII cWW cW-W 4 A.C349 A.G356 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#30[#15] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form A 1 A.G361 A.C378 G-C WC 19-XIX cWW cW-W 2 A.C362 A.G377 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#31[#14] bps=3 strand-1 5'-AGG-3' bp-type ||| strand-2 3'-UCC-5' helix-form AA 1 A.A369 A.U381 A-U WC 20-XX cWW cW-W 2 A.G370 A.C380 G-C WC 19-XIX cWW cW-W 3 A.G371 A.C379 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#32[#17] bps=8 strand-1 5'-CGGCGGAA-3' bp-type |||||||| strand-2 3'-GCUGCCUU-5' helix-form ....A.. 1 A.C422 A.G446 C-G WC 19-XIX cWW cW-W 2 A.G423 A.C445 G-C WC 19-XIX cWW cW-W 3 A.G424 A.U444 G-U Wobble 28-XXVIII cWW cW-W 4 A.C425 A.G443 C-G WC 19-XIX cWW cW-W 5 A.G426 A.C442 G-C WC 19-XIX cWW cW-W 6 A.G427 A.C441 G-C WC 19-XIX cWW cW-W 7 A.A428 A.U440 A-U WC 20-XX cWW cW-W 8 A.A429 A.U439 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#33[#16] bps=5 strand-1 5'-GGGAG-3' bp-type ||||| strand-2 3'-CCCUC-5' helix-form ..AA 1 A.G453 A.C468 G-C WC 19-XIX cWW cW-W 2 A.G454 A.C467 G-C WC 19-XIX cWW cW-W 3 A.G455 A.C466 G-C WC 19-XIX cWW cW-W 4 A.A456 A.U465 A-U WC 20-XX cWW cW-W 5 A.G457 A.C464 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#34[#18] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 A.C508 A.G515 C-G WC 19-XIX cWW cW-W 2 A.C509 A.G514 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#35[#20] bps=4 strand-1 5'-CCCC-3' bp-type |||| strand-2 3'-GGGG-5' helix-form AAA 1 A.C531 A.G542 C-G WC 19-XIX cWW cW-W 2 A.C532 A.G541 C-G WC 19-XIX cWW cW-W 3 A.C533 A.G540 C-G WC 19-XIX cWW cW-W 4 A.C534 A.G539 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#36[#22] bps=4 strand-1 5'-GUCA-3' bp-type |||| strand-2 3'-CGGU-5' helix-form AAA 1 A.G579 A.C604 G-C WC 19-XIX cWW cW-W 2 A.U580 A.G603 U-G Wobble 28-XXVIII cWW cW-W 3 A.C581 A.G602 C-G WC 19-XIX cWW cW-W 4 A.A582 A.U601 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#37[#22] bps=4 strand-1 5'-GCCC-3' bp-type |||| strand-2 3'-UGGG-5' helix-form .AA 1 A.G585 A.U598 G-U Wobble 28-XXVIII cWW cW-W 2 A.C586 A.G597 C-G WC 19-XIX cWW cW-W 3 A.C587 A.G596 C-G WC 19-XIX cWW cW-W 4 A.C588 A.G595 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#38[#40] bps=6 strand-1 5'-ACCGGC-3' bp-type |||||| strand-2 3'-UGGCCG-5' helix-form AAAAA 1 A.A623 A.U1301 A-U WC 20-XX cWW cW-W 2 A.C624 A.G1300 C-G WC 19-XIX cWW cW-W 3 A.C625 A.G1299 C-G WC 19-XIX cWW cW-W 4 A.G626 A.C1298 G-C WC 19-XIX cWW cW-W 5 A.G627 A.C1297 G-C WC 19-XIX cWW cW-W 6 A.C628 A.G1296 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#39[#24] bps=7 strand-1 5'-UACGAUC-3' bp-type ||||||| strand-2 3'-AUGCUGG-5' helix-form AAAA.. 1 A.U633 A.A715 U-A WC 20-XX cWW cW-W 2 A.A634 A.U714 A-U WC 20-XX cWW cW-W 3 A.C635 A.G713 C-G WC 19-XIX cWW cW-W 4 A.G636 A.C712 G-C WC 19-XIX cWW cW-W 5 A.A637 A.U711 A-U WC 20-XX cWW cW-W 6 A.U638 A.G710 U-G Wobble 28-XXVIII cWW cW-W 7 A.C639 A.G709 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#40[#24] bps=5 strand-1 5'-CGUGC-3' bp-type ||||| strand-2 3'-GCAUG-5' helix-form AAAA 1 A.C641 A.G707 C-G WC 19-XIX cWW cW-W 2 A.G642 A.C706 G-C WC 19-XIX cWW cW-W 3 A.U643 A.A705 U-A WC 20-XX cWW cW-W 4 A.G644 A.U704 G-U Wobble 28-XXVIII cWW cW-W 5 A.C645 A.G703 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#41[#25] bps=3 strand-1 5'-GGU-3' bp-type ||| strand-2 3'-CCG-5' helix-form A. 1 A.G648 A.C670 G-C WC 19-XIX cWW cW-W 2 A.G649 A.C669 G-C WC 19-XIX cWW cW-W 3 A.U650 A.G668 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#42[#25] bps=3 strand-1 5'-GCA-3' bp-type ||| strand-2 3'-CGU-5' helix-form AA 1 A.G654 A.C664 G-C WC 19-XIX cWW cW-W 2 A.C655 A.G663 C-G WC 19-XIX cWW cW-W 3 A.A656 A.U662 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#43[#26] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form A 1 A.G674 A.C681 G-C WC 19-XIX cWW cW-W 2 A.C675 A.G680 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#44[#27] bps=4 strand-1 5'-GUCU-3' bp-type |||| strand-2 3'-CGGG-5' helix-form ... 1 A.G684 A.C696 G-C WC 19-XIX cWW cW-W 2 A.U685 A.G695 U-G Wobble 28-XXVIII cWW cW-W 3 A.C686 A.G694 C-G WC 19-XIX cWW cW-W 4 A.U687 A.G693 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#45[#23] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form . 1 A.C718 A.G856 C-G WC 19-XIX cWW cW-W 2 A.C719 A.G855 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#46[#28] bps=6 strand-1 5'-CCAGGU-3' bp-type |||||| strand-2 3'-GGUCCA-5' helix-form AAAA. 1 A.C725 A.G846 C-G WC 19-XIX cWW cW-W 2 A.C726 A.G845 C-G WC 19-XIX cWW cW-W 3 A.A727 A.U844 A-U WC 20-XX cWW cW-W 4 A.G728 A.C843 G-C WC 19-XIX cWW cW-W 5 A.G729 A.C842 G-C WC 19-XIX cWW cW-W 6 A.U730 A.A841 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#47[#29] bps=9 strand-1 5'-ACCCAUGUC-3' bp-type ||||||||| strand-2 3'-UGGGUGUGG-5' helix-form AA.A.... 1 A.A736 A.U820 A-U WC 20-XX cWW cW-W 2 A.C737 A.G819 C-G WC 19-XIX cWW cW-W 3 A.C738 A.G818 C-G WC 19-XIX cWW cW-W 4 A.C739 A.G817 C-G WC 19-XIX cWW cW-W 5 A.A740 A.U816 A-U WC 20-XX cWW cW-W 6 A.U741 A.G815 U-G Wobble 28-XXVIII cWW cW-W 7 A.G742 A.U814 G-U Wobble 28-XXVIII cWW cW-W 8 A.U743 A.G813 U-G Wobble 28-XXVIII cWW cW-W 9 A.C744 A.G812 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#48[#30] bps=3 strand-1 5'-GGG-3' bp-type ||| strand-2 3'-CCC-5' helix-form A. 1 A.G747 A.C779 G-C WC 19-XIX cWW cW-W 2 A.G748 A.C778 G-C WC 19-XIX cWW cW-W 3 A.G749 A.C777 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#49[#30] bps=6 strand-1 5'-GUUCAG-3' bp-type |||||| strand-2 3'-UAAGUC-5' helix-form AAAA. 1 A.G754 A.U771 G-U Wobble 28-XXVIII cWW cW-W 2 A.U755 A.A770 U-A WC 20-XX cWW cW-W 3 A.U756 A.A769 U-A WC 20-XX cWW cW-W 4 A.C757 A.G768 C-G WC 19-XIX cWW cW-W 5 A.A758 A.U767 A-U WC 20-XX cWW cW-W 6 A.G759 A.C766 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#50[#30] bps=3 strand-1 5'-CCC-3' bp-type ||| strand-2 3'-GGG-5' helix-form AA 1 A.C783 A.G807 C-G WC 19-XIX cWW cW-W 2 A.C784 A.G806 C-G WC 19-XIX cWW cW-W 3 A.C785 A.G805 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#51[#30] bps=5 strand-1 5'-CGCAC-3' bp-type ||||| strand-2 3'-GCGUG-5' helix-form .AAA 1 A.C787 A.G804 C-G WC 19-XIX cWW cW-W 2 A.G788 A.C803 G-C WC 19-XIX cWW cW-W 3 A.C789 A.G802 C-G WC 19-XIX cWW cW-W 4 A.A790 A.U801 A-U WC 20-XX cWW cW-W 5 A.C791 A.G800 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#52[#28] bps=3 strand-1 5'-GGU-3' bp-type ||| strand-2 3'-CCG-5' helix-form A. 1 A.G824 A.C834 G-C WC 19-XIX cWW cW-W 2 A.G825 A.C833 G-C WC 19-XIX cWW cW-W 3 A.U826 A.G832 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#53[#34] bps=6 strand-1 5'-CUCUCC-3' bp-type |||||| strand-2 3'-GAGAGG-5' helix-form .AA.. 1 A.C859 A.G1236 C-G WC 19-XIX cWW cW-W 2 A.U860 A.A1235 U-A WC 20-XX cWW cW-W 3 A.C861 A.G1234 C-G WC 19-XIX cWW cW-W 4 A.U862 A.A1233 U-A WC 20-XX cWW cW-W 5 A.C863 A.G1232 C-G WC 19-XIX cWW cW-W 6 A.C864 A.G1231 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#54[#32] bps=4 strand-1 5'-UAGC-3' bp-type |||| strand-2 3'-AUCG-5' helix-form .A. 1 A.U869 A.A882 U-A WC 20-XX cWW cW-W 2 A.A870 A.U881 A-U WC 20-XX cWW cW-W 3 A.G871 A.C880 G-C WC 19-XIX cWW cW-W 4 A.C872 A.G879 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#55[#32] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-UG-5' helix-form . 1 A.G883 A.U989 G-U Wobble 28-XXVIII cWW cW-W 2 A.C884 A.G988 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#56[#32] bps=7 strand-1 5'-CUCAAGG-3' bp-type ||||||| strand-2 3'-GGGUUCC-5' helix-form ..AAA. 1 A.C885 A.G986 C-G WC 19-XIX cWW cW-W 2 A.U886 A.G985 U-G Wobble 28-XXVIII cWW cW-W 3 A.C887 A.G984 C-G WC 19-XIX cWW cW-W 4 A.A888 A.U983 A-U WC 20-XX cWW cW-W 5 A.A889 A.U982 A-U WC 20-XX cWW cW-W 6 A.G890 A.C981 G-C WC 19-XIX cWW cW-W 7 A.G891 A.C980 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#57[#32] bps=5 strand-1 5'-GAGUC-3' bp-type ||||| strand-2 3'-UUCAG-5' helix-form .AAA 1 A.G895 A.U977 G-U Wobble 28-XXVIII cWW cW-W 2 A.A896 A.U976 A-U WC 20-XX cWW cW-W 3 A.G897 A.C975 G-C WC 19-XIX cWW cW-W 4 A.U898 A.A974 U-A WC 20-XX cWW cW-W 5 A.C899 A.G973 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#58[#33] bps=3 strand-1 5'-UGA-3' bp-type ||| strand-2 3'-ACU-5' helix-form A. 1 A.U915 A.A956 U-A WC 20-XX cWW cW-W 2 A.G916 A.C955 G-C WC 19-XIX cWW cW-W 3 A.A917 A.U954 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#59[#33] bps=2 strand-1 5'-UG-3' bp-type || strand-2 3'-AC-5' helix-form A 1 A.U919 A.A952 U-A WC 20-XX cWW cW-W 2 A.G920 A.C951 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#60[#34] bps=7 strand-1 5'-GACUGCG-3' bp-type ||||||| strand-2 3'-CUGAUGC-5' helix-form AAA..A 1 A.G992 A.C1017 G-C WC 19-XIX cWW cW-W 2 A.A993 A.U1016 A-U WC 20-XX cWW cW-W 3 A.C994 A.G1015 C-G WC 19-XIX cWW cW-W 4 A.U995 A.A1014 U-A WC 20-XX cWW cW-W 5 A.G996 A.U1013 G-U Wobble 28-XXVIII cWW cW-W 6 A.C997 A.G1012 C-G WC 19-XIX cWW cW-W 7 A.G998 A.C1011 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#61[#34] bps=2 strand-1 5'-GU-3' bp-type || strand-2 3'-UA-5' helix-form A 1 A.G1000 A.U1009 G-U Wobble 28-XXVIII cWW cW-W 2 A.U1001 A.A1008 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#62[#35] bps=3 strand-1 5'-GGG-3' bp-type ||| strand-2 3'-CCC-5' helix-form AA 1 A.G1022 A.C1033 G-C WC 19-XIX cWW cW-W 2 A.G1023 A.C1032 G-C WC 19-XIX cWW cW-W 3 A.G1024 A.C1031 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#63[#38] bps=4 strand-1 5'-CCGC-3' bp-type |||| strand-2 3'-GGCG-5' helix-form AAA 1 A.C1037 A.G1209 C-G WC 19-XIX cWW cW-W 2 A.C1038 A.G1208 C-G WC 19-XIX cWW cW-W 3 A.G1039 A.C1207 G-C WC 19-XIX cWW cW-W 4 A.C1040 A.G1206 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#64[#38] bps=3 strand-1 5'-AGC-3' bp-type ||| strand-2 3'-UCG-5' helix-form AA 1 A.A1042 A.U1205 A-U WC 20-XX cWW cW-W 2 A.G1043 A.C1204 G-C WC 19-XIX cWW cW-W 3 A.C1044 A.G1203 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#65[#38] bps=3 strand-1 5'-GGU-3' bp-type ||| strand-2 3'-CCA-5' helix-form .A 1 A.G1048 A.C1199 G-C WC 19-XIX cWW cW-W 2 A.G1049 A.C1198 G-C WC 19-XIX cWW cW-W 3 A.U1050 A.A1197 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#66[#36] bps=3 strand-1 5'-CCC-3' bp-type ||| strand-2 3'-GGG-5' helix-form AA 1 A.C1051 A.G1184 C-G WC 19-XIX cWW cW-W 2 A.C1052 A.G1183 C-G WC 19-XIX cWW cW-W 3 A.C1053 A.G1182 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#67[#38] bps=6 strand-1 5'-AUACGU-3' bp-type |||||| strand-2 3'-UAUGCA-5' helix-form ...AA 1 A.A1059 A.U1195 A-U WC 20-XX cWW cW-W 2 A.U1060 A.A1194 U-A WC 20-XX cWW cW-W 3 A.A1061 A.U1193 A-U WC 20-XX cWW cW-W 4 A.C1062 A.G1192 C-G WC 19-XIX cWW cW-W 5 A.G1063 A.C1191 G-C WC 19-XIX cWW cW-W 6 A.U1064 A.A1190 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#68[#37] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form A 1 A.G1076 A.C1170 G-C WC 19-XIX cWW cW-W 2 A.G1077 A.C1169 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#69[#37] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-UC-5' helix-form . 1 A.G1082 A.U1165 G-U Wobble 28-XXVIII cWW cW-W 2 A.G1083 A.C1164 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#70[#37] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-UG-5' helix-form . 1 A.G1088 A.U1159 G-U Wobble 28-XXVIII cWW cW-W 2 A.C1089 A.G1158 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#71[#38] bps=7 strand-1 5'-ACUGUUC-3' bp-type ||||||| strand-2 3'-UGACAAG-5' helix-form .AAAA. 1 A.A1210 A.U1226 A-U WC 20-XX cWW cW-W 2 A.C1211 A.G1225 C-G WC 19-XIX cWW cW-W 3 A.U1212 A.A1224 U-A WC 20-XX cWW cW-W 4 A.G1213 A.C1223 G-C WC 19-XIX cWW cW-W 5 A.U1214 A.A1222 U-A WC 20-XX cWW cW-W 6 A.U1215 A.A1221 U-A WC 20-XX cWW cW-W 7 A.C1216 A.G1220 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#72[#34] bps=5 strand-1 5'-UUCUA-3' bp-type ||||| strand-2 3'-AAGAU-5' helix-form .AAA 1 A.U1239 A.A1287 U-A WC 20-XX cWW cW-W 2 A.U1240 A.A1286 U-A WC 20-XX cWW cW-W 3 A.C1241 A.G1285 C-G WC 19-XIX cWW cW-W 4 A.U1242 A.A1284 U-A WC 20-XX cWW cW-W 5 A.A1243 A.U1283 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#73[#34] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form . 1 A.G1247 A.C1279 G-C WC 19-XIX cWW cW-W 2 A.C1248 A.G1278 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#74[#39] bps=5 strand-1 5'-GCCAG-3' bp-type ||||| strand-2 3'-UGGUC-5' helix-form AAAA 1 A.G1255 A.U1274 G-U Wobble 28-XXVIII cWW cW-W 2 A.C1256 A.G1273 C-G WC 19-XIX cWW cW-W 3 A.C1257 A.G1272 C-G WC 19-XIX cWW cW-W 4 A.A1258 A.U1271 A-U WC 20-XX cWW cW-W 5 A.G1259 A.C1270 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#75[#39] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 A.C1261 A.G1268 C-G WC 19-XIX cWW cW-W 2 A.C1262 A.G1267 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#76[#40] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-UG-5' helix-form A 1 A.G1309 A.U2040 G-U Wobble 28-XXVIII cWW cW-W 2 A.C1310 A.G2039 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#77[#44] bps=6 strand-1 5'-GAGGGG-3' bp-type |||||| strand-2 3'-CUCCCC-5' helix-form AAAAA 1 A.G1315 A.C1333 G-C WC 19-XIX cWW cW-W 2 A.A1316 A.U1332 A-U WC 20-XX cWW cW-W 3 A.G1317 A.C1331 G-C WC 19-XIX cWW cW-W 4 A.G1318 A.C1330 G-C WC 19-XIX cWW cW-W 5 A.G1319 A.C1329 G-C WC 19-XIX cWW cW-W 6 A.G1320 A.C1328 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#78[#44] bps=4 strand-1 5'-CACC-3' bp-type |||| strand-2 3'-GUGG-5' helix-form ..A 1 A.C1334 A.G1690 C-G WC 19-XIX cWW cW-W 2 A.A1335 A.U1689 A-U WC 20-XX cWW cW-W 3 A.C1336 A.G1688 C-G WC 19-XIX cWW cW-W 4 A.C1337 A.G1687 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#79[#41] bps=3 strand-1 5'-GCC-3' bp-type ||| strand-2 3'-CGG-5' helix-form A. 1 A.G1342 A.C1670 G-C WC 19-XIX cWW cW-W 2 A.C1343 A.G1669 C-G WC 19-XIX cWW cW-W 3 A.C1344 A.G1668 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#80[#42] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form A 1 A.G1348 A.C1650 G-C WC 19-XIX cWW cW-W 2 A.G1349 A.C1649 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#81[#43] bps=6 strand-1 5'-CCUGAG-3' bp-type |||||| strand-2 3'-GGACUC-5' helix-form AAAAA 1 A.C1353 A.G1377 C-G WC 19-XIX cWW cW-W 2 A.C1354 A.G1376 C-G WC 19-XIX cWW cW-W 3 A.U1355 A.A1375 U-A WC 20-XX cWW cW-W 4 A.G1356 A.C1374 G-C WC 19-XIX cWW cW-W 5 A.A1357 A.U1373 A-U WC 20-XX cWW cW-W 6 A.G1358 A.C1372 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#82[#43] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form . 1 A.G1362 A.C1370 G-C WC 19-XIX cWW cW-W 2 A.G1363 A.C1369 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#83[#48] bps=2 strand-1 5'-GU-3' bp-type || strand-2 3'-CA-5' helix-form . 1 A.G1382 A.C1443 G-C WC 19-XIX cWW cW-W 2 A.U1383 A.A1442 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#84[#45] bps=4 strand-1 5'-CGGG-3' bp-type |||| strand-2 3'-GCCC-5' helix-form AAA 1 A.C1384 A.G1646 C-G WC 19-XIX cWW cW-W 2 A.G1385 A.C1645 G-C WC 19-XIX cWW cW-W 3 A.G1386 A.C1644 G-C WC 19-XIX cWW cW-W 4 A.G1387 A.C1643 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#85[#46] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 A.C1389 A.G1420 C-G WC 19-XIX cWW cW-W 2 A.C1390 A.G1419 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#86[#46] bps=3 strand-1 5'-GCC-3' bp-type ||| strand-2 3'-CGG-5' helix-form AA 1 A.G1394 A.C1415 G-C WC 19-XIX cWW cW-W 2 A.C1395 A.G1414 C-G WC 19-XIX cWW cW-W 3 A.C1396 A.G1413 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#87[#47] bps=3 strand-1 5'-GCC-3' bp-type ||| strand-2 3'-CGG-5' helix-form AA 1 A.G1400 A.C1409 G-C WC 19-XIX cWW cW-W 2 A.C1401 A.G1408 C-G WC 19-XIX cWW cW-W 3 A.C1402 A.G1407 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#88[#48] bps=5 strand-1 5'-ACAGG-3' bp-type ||||| strand-2 3'-UGUCC-5' helix-form .AAA 1 A.A1424 A.U1441 A-U WC 20-XX cWW cW-W 2 A.C1425 A.G1440 C-G WC 19-XIX cWW cW-W 3 A.A1426 A.U1439 A-U WC 20-XX cWW cW-W 4 A.G1427 A.C1438 G-C WC 19-XIX cWW cW-W 5 A.G1428 A.C1437 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#89[#48] bps=5 strand-1 5'-CACCU-3' bp-type ||||| strand-2 3'-GUGGA-5' helix-form AAAA 1 A.C1444 A.G1642 C-G WC 19-XIX cWW cW-W 2 A.A1445 A.U1641 A-U WC 20-XX cWW cW-W 3 A.C1446 A.G1640 C-G WC 19-XIX cWW cW-W 4 A.C1447 A.G1639 C-G WC 19-XIX cWW cW-W 5 A.U1448 A.A1638 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#90[#48] bps=6 strand-1 5'-CUCACC-3' bp-type |||||| strand-2 3'-GAGUGG-5' helix-form AAAAA 1 A.C1450 A.G1637 C-G WC 19-XIX cWW cW-W 2 A.U1451 A.A1636 U-A WC 20-XX cWW cW-W 3 A.C1452 A.G1635 C-G WC 19-XIX cWW cW-W 4 A.A1453 A.U1634 A-U WC 20-XX cWW cW-W 5 A.C1454 A.G1633 C-G WC 19-XIX cWW cW-W 6 A.C1455 A.G1632 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#91[#49] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form A 1 A.G1462 A.C1629 G-C WC 19-XIX cWW cW-W 2 A.C1463 A.G1628 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#92[#49] bps=4 strand-1 5'-GGGG-3' bp-type |||| strand-2 3'-CUCC-5' helix-form ..A 1 A.G1467 A.C1625 G-C WC 19-XIX cWW cW-W 2 A.G1468 A.U1624 G-U Wobble 28-XXVIII cWW cW-W 3 A.G1469 A.C1623 G-C WC 19-XIX cWW cW-W 4 A.G1470 A.C1622 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#93[#50] bps=4 strand-1 5'-GCAG-3' bp-type |||| strand-2 3'-CGUC-5' helix-form AAA 1 A.G1475 A.C1612 G-C WC 19-XIX cWW cW-W 2 A.C1476 A.G1611 C-G WC 19-XIX cWW cW-W 3 A.A1477 A.U1610 A-U WC 20-XX cWW cW-W 4 A.G1478 A.C1609 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#94[#50] bps=3 strand-1 5'-GGA-3' bp-type ||| strand-2 3'-CCU-5' helix-form .A 1 A.G1481 A.C1605 G-C WC 19-XIX cWW cW-W 2 A.G1482 A.C1604 G-C WC 19-XIX cWW cW-W 3 A.A1483 A.U1603 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#95[#50] bps=3 strand-1 5'-GGG-3' bp-type ||| strand-2 3'-UCC-5' helix-form .A 1 A.G1486 A.U1599 G-U Wobble 28-XXVIII cWW cW-W 2 A.G1487 A.C1598 G-C WC 19-XIX cWW cW-W 3 A.G1488 A.C1597 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#96[#50] bps=3 strand-1 5'-GCG-3' bp-type ||| strand-2 3'-CGC-5' helix-form AA 1 A.G1492 A.C1511 G-C WC 19-XIX cWW cW-W 2 A.C1493 A.G1510 C-G WC 19-XIX cWW cW-W 3 A.G1494 A.C1509 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#97[#53] bps=2 strand-1 5'-UC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 A.U1513 A.G1572 U-G Wobble 28-XXVIII cWW cW-W 2 A.C1514 A.G1571 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#98[#51] bps=4 strand-1 5'-AGGC-3' bp-type |||| strand-2 3'-UCCG-5' helix-form AAA 1 A.A1524 A.U1560 A-U WC 20-XX cWW cW-W 2 A.G1525 A.C1559 G-C WC 19-XIX cWW cW-W 3 A.G1526 A.C1558 G-C WC 19-XIX cWW cW-W 4 A.C1527 A.G1557 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#99[#52] bps=6 strand-1 5'-GGGAAA-3' bp-type |||||| strand-2 3'-CCCUUU-5' helix-form .AAAA 1 A.G1529 A.C1552 G-C WC 19-XIX cWW cW-W 2 A.G1530 A.C1551 G-C WC 19-XIX cWW cW-W 3 A.G1531 A.C1550 G-C WC 19-XIX cWW cW-W 4 A.A1532 A.U1549 A-U WC 20-XX cWW cW-W 5 A.A1533 A.U1548 A-U WC 20-XX cWW cW-W 6 A.A1534 A.U1547 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#100[#52] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form A 1 A.G1537 A.C1545 G-C WC 19-XIX cWW cW-W 2 A.G1538 A.C1544 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#101[#53] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form A 1 A.G1576 A.C1590 G-C WC 19-XIX cWW cW-W 2 A.C1577 A.G1589 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#102[#54] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form . 1 A.C1656 A.G1665 C-G WC 19-XIX cWW cW-W 2 A.C1657 A.G1664 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#103[#44] bps=4 strand-1 5'-AGGA-3' bp-type |||| strand-2 3'-UCCU-5' helix-form .AA 1 A.A1672 A.U1684 A-U WC 20-XX cWW cW-W 2 A.G1673 A.C1683 G-C WC 19-XIX cWW cW-W 3 A.G1674 A.C1682 G-C WC 19-XIX cWW cW-W 4 A.A1675 A.U1681 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#104[#40] bps=4 strand-1 5'-CGAG-3' bp-type |||| strand-2 3'-GCUC-5' helix-form .A. 1 A.C1693 A.G2038 C-G WC 19-XIX cWW cW-W 2 A.G1694 A.C2037 G-C WC 19-XIX cWW cW-W 3 A.A1695 A.U2036 A-U WC 20-XX cWW cW-W 4 A.G1696 A.C2035 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#105[#40] bps=8 strand-1 5'-CUCUCGUU-3' bp-type |||||||| strand-2 3'-GAGAGCAA-5' helix-form AAAAAAA 1 A.C1701 A.G2033 C-G WC 19-XIX cWW cW-W 2 A.U1702 A.A2032 U-A WC 20-XX cWW cW-W 3 A.C1703 A.G2031 C-G WC 19-XIX cWW cW-W 4 A.U1704 A.A2030 U-A WC 20-XX cWW cW-W 5 A.C1705 A.G2029 C-G WC 19-XIX cWW cW-W 6 A.G1706 A.C2028 G-C WC 19-XIX cWW cW-W 7 A.U1707 A.A2027 U-A WC 20-XX cWW cW-W 8 A.U1708 A.A2026 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#106[#55] bps=2 strand-1 5'-AG-3' bp-type || strand-2 3'-UC-5' helix-form . 1 A.A1710 A.U2024 A-U WC 20-XX cWW cW-W 2 A.G1711 A.C2023 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#107[#56] bps=5 strand-1 5'-ACCCC-3' bp-type ||||| strand-2 3'-UGGGG-5' helix-form AAA. 1 A.A1727 A.U1751 A-U WC 20-XX cWW cW-W 2 A.C1728 A.G1750 C-G WC 19-XIX cWW cW-W 3 A.C1729 A.G1749 C-G WC 19-XIX cWW cW-W 4 A.C1730 A.G1748 C-G WC 19-XIX cWW cW-W 5 A.C1731 A.G1747 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#108[#57] bps=5 strand-1 5'-GCUCU-3' bp-type ||||| strand-2 3'-CGAGA-5' helix-form ..AA 1 A.G1752 A.C1780 G-C WC 19-XIX cWW cW-W 2 A.C1753 A.G1779 C-G WC 19-XIX cWW cW-W 3 A.U1754 A.A1778 U-A WC 20-XX cWW cW-W 4 A.C1755 A.G1777 C-G WC 19-XIX cWW cW-W 5 A.U1756 A.A1776 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#109[#57] bps=4 strand-1 5'-GGGU-3' bp-type |||| strand-2 3'-CCCG-5' helix-form AA. 1 A.G1761 A.C1772 G-C WC 19-XIX cWW cW-W 2 A.G1762 A.C1771 G-C WC 19-XIX cWW cW-W 3 A.G1763 A.C1770 G-C WC 19-XIX cWW cW-W 4 A.U1764 A.G1769 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#110[#55] bps=7 strand-1 5'-GCCCAGG-3' bp-type ||||||| strand-2 3'-CGGGUCU-5' helix-form AA.... 1 A.G1793 A.C2017 G-C WC 19-XIX cWW cW-W 2 A.C1794 A.G2016 C-G WC 19-XIX cWW cW-W 3 A.C1795 A.G2015 C-G WC 19-XIX cWW cW-W 4 A.C1796 A.G2014 C-G WC 19-XIX cWW cW-W 5 A.A1797 A.U2013 A-U WC 20-XX cWW cW-W 6 A.G1798 A.C2012 G-C WC 19-XIX cWW cW-W 7 A.G1799 A.U2011 G-U Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#111[#55] bps=2 strand-1 5'-CG-3' bp-type || strand-2 3'-GC-5' helix-form A 1 A.C1800 A.G2009 C-G WC 19-XIX cWW cW-W 2 A.G1801 A.C2008 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#112[#31] bps=2 strand-1 5'-GU-3' bp-type || strand-2 3'-CA-5' helix-form . 1 A.G1805 A.C1817 G-C WC 19-XIX cWW cW-W 2 A.U1806 A.A1816 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#113[#59] bps=7 strand-1 5'-GGUCUCU-3' bp-type ||||||| strand-2 3'-UCGGGGA-5' helix-form ...... 1 A.G1821 A.U1856 G-U Wobble 28-XXVIII cWW cW-W 2 A.G1822 A.C1855 G-C WC 19-XIX cWW cW-W 3 A.U1823 A.G1854 U-G Wobble 28-XXVIII cWW cW-W 4 A.C1824 A.G1853 C-G WC 19-XIX cWW cW-W 5 A.U1825 A.G1852 U-G Wobble 28-XXVIII cWW cW-W 6 A.C1826 A.G1851 C-G WC 19-XIX cWW cW-W 7 A.U1827 A.A1850 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#114[#60] bps=3 strand-1 5'-GCC-3' bp-type ||| strand-2 3'-CGG-5' helix-form .A 1 A.G1833 A.C1842 G-C WC 19-XIX cWW cW-W 2 A.C1834 A.G1841 C-G WC 19-XIX cWW cW-W 3 A.C1835 A.G1840 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#115[#61] bps=2 strand-1 5'-CU-3' bp-type || strand-2 3'-GA-5' helix-form A 1 A.C1872 A.G1926 C-G WC 19-XIX cWW cW-W 2 A.U1873 A.A1925 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#116[#61] bps=2 strand-1 5'-GU-3' bp-type || strand-2 3'-CG-5' helix-form . 1 A.G1879 A.C1921 G-C WC 19-XIX cWW cW-W 2 A.U1880 A.G1920 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#117[#62] bps=2 strand-1 5'-GA-3' bp-type || strand-2 3'-UU-5' helix-form . 1 A.G1884 A.U1916 G-U Wobble 28-XXVIII cWW cW-W 2 A.A1885 A.U1915 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#118[#21] bps=5 strand-1 5'-ACCUG-3' bp-type ||||| strand-2 3'-UGGAC-5' helix-form AAAA 1 A.A2052 A.U2069 A-U WC 20-XX cWW cW-W 2 A.C2053 A.G2068 C-G WC 19-XIX cWW cW-W 3 A.C2054 A.G2067 C-G WC 19-XIX cWW cW-W 4 A.U2055 A.A2066 U-A WC 20-XX cWW cW-W 5 A.G2056 A.C2065 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#119[#81] bps=8 strand-1 5'-CCCGCGAC-3' bp-type |||||||| strand-2 3'-GGGCGCUG-5' helix-form AA.AA.. 1 A.C2072 A.G2654 C-G WC 19-XIX cWW cW-W 2 A.C2073 A.G2653 C-G WC 19-XIX cWW cW-W 3 A.C2074 A.G2652 C-G WC 19-XIX cWW cW-W 4 A.G2075 A.C2651 G-C WC 19-XIX cWW cW-W 5 A.C2076 A.G2650 C-G WC 19-XIX cWW cW-W 6 A.G2077 A.C2649 G-C WC 19-XIX cWW cW-W 7 A.A2078 A.U2648 A-U WC 20-XX cWW cW-W 8 A.C2079 A.G2647 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#120[#81] bps=3 strand-1 5'-GGA-3' bp-type ||| strand-2 3'-CCU-5' helix-form AA 1 A.G2081 A.C2646 G-C WC 19-XIX cWW cW-W 2 A.G2082 A.C2645 G-C WC 19-XIX cWW cW-W 3 A.A2083 A.U2644 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#121[#81] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form . 1 A.G2085 A.C2641 G-C WC 19-XIX cWW cW-W 2 A.G2086 A.C2640 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#122[#64] bps=2 strand-1 5'-GG-3' bp-type || strand-2 3'-CC-5' helix-form A 1 A.G2098 A.C2471 G-C WC 19-XIX cWW cW-W 2 A.G2099 A.C2470 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#123[#64] bps=4 strand-1 5'-AGCU-3' bp-type |||| strand-2 3'-UCGA-5' helix-form ... 1 A.A2100 A.U2467 A-U WC 20-XX cWW cW-W 2 A.G2101 A.C2466 G-C WC 19-XIX cWW cW-W 3 A.C2102 A.G2465 C-G WC 19-XIX cWW cW-W 4 A.U2103 A.A2464 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#124[#65] bps=5 strand-1 5'-ACUGC-3' bp-type ||||| strand-2 3'-UGACG-5' helix-form .... 1 A.A2106 A.U2272 A-U WC 20-XX cWW cW-W 2 A.C2107 A.G2271 C-G WC 19-XIX cWW cW-W 3 A.U2108 A.A2270 U-A WC 20-XX cWW cW-W 4 A.G2109 A.C2269 G-C WC 19-XIX cWW cW-W 5 A.C2110 A.G2268 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#125[#65] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form . 1 A.C2113 A.G2264 C-G WC 19-XIX cWW cW-W 2 A.C2114 A.G2263 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#126[#65] bps=5 strand-1 5'-GAUAU-3' bp-type ||||| strand-2 3'-CUGUG-5' helix-form .... 1 A.G2116 A.C2261 G-C WC 19-XIX cWW cW-W 2 A.A2117 A.U2260 A-U WC 20-XX cWW cW-W 3 A.U2118 A.G2259 U-G Wobble 28-XXVIII cWW cW-W 4 A.A2119 A.U2258 A-U WC 20-XX cWW cW-W 5 A.U2120 A.G2257 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#127[#46] bps=2 strand-1 5'-GU-3' bp-type || strand-2 3'-CA-5' helix-form A 1 A.G2126 A.C2221 G-C WC 19-XIX cWW cW-W 2 A.U2127 A.A2220 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#128[#46] bps=8 strand-1 5'-GUACAGCU-3' bp-type |||||||| strand-2 3'-UAUGUCGG-5' helix-form ...AAA. 1 A.G2130 A.U2217 G-U Wobble 28-XXVIII cWW cW-W 2 A.U2131 A.A2216 U-A WC 20-XX cWW cW-W 3 A.A2132 A.U2215 A-U WC 20-XX cWW cW-W 4 A.C2133 A.G2214 C-G WC 19-XIX cWW cW-W 5 A.A2134 A.U2213 A-U WC 20-XX cWW cW-W 6 A.G2135 A.C2212 G-C WC 19-XIX cWW cW-W 7 A.C2136 A.G2211 C-G WC 19-XIX cWW cW-W 8 A.U2137 A.G2210 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#129[#46] bps=3 strand-1 5'-GGU-3' bp-type ||| strand-2 3'-CCA-5' helix-form .. 1 A.G2149 A.C2207 G-C WC 19-XIX cWW cW-W 2 A.G2150 A.C2206 G-C WC 19-XIX cWW cW-W 3 A.U2151 A.A2205 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#130[#66] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form . 1 A.G2156 A.C2190 G-C WC 19-XIX cWW cW-W 2 A.C2157 A.G2189 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#131[#68] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form . 1 A.G2171 A.C2178 G-C WC 19-XIX cWW cW-W 2 A.C2172 A.G2177 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#132[#46] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form . 1 A.C2230 A.G2251 C-G WC 19-XIX cWW cW-W 2 A.C2231 A.G2250 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#133[#46] bps=6 strand-1 5'-CCGCCC-3' bp-type |||||| strand-2 3'-GGCGGG-5' helix-form AAAAA 1 A.C2233 A.G2249 C-G WC 19-XIX cWW cW-W 2 A.C2234 A.G2248 C-G WC 19-XIX cWW cW-W 3 A.G2235 A.C2247 G-C WC 19-XIX cWW cW-W 4 A.C2236 A.G2246 C-G WC 19-XIX cWW cW-W 5 A.C2237 A.G2245 C-G WC 19-XIX cWW cW-W 6 A.C2238 A.G2244 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#134[#69] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form . 1 A.C2289 A.G2309 C-G WC 19-XIX cWW cW-W 2 A.C2290 A.G2308 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#135[#72] bps=2 strand-1 5'-CU-3' bp-type || strand-2 3'-GA-5' helix-form . 1 A.C2376 A.G2399 C-G WC 19-XIX cWW cW-W 2 A.U2377 A.A2398 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#136[#73] bps=2 strand-1 5'-AC-3' bp-type || strand-2 3'-UG-5' helix-form . 1 A.A2383 A.U2392 A-U WC 20-XX cWW cW-W 2 A.C2384 A.G2391 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#137[#76] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 A.C2432 A.G2443 C-G WC 19-XIX cWW cW-W 2 A.C2433 A.G2442 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#138[#79] bps=5 strand-1 5'-AUCGC-3' bp-type ||||| strand-2 3'-UGGCG-5' helix-form .... 1 A.A2542 A.U2600 A-U WC 20-XX cWW cW-W 2 A.U2543 A.G2599 U-G Wobble 28-XXVIII cWW cW-W 3 A.C2544 A.G2598 C-G WC 19-XIX cWW cW-W 4 A.G2545 A.C2597 G-C WC 19-XIX cWW cW-W 5 A.C2546 A.G2596 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#139[#80] bps=3 strand-1 5'-CCU-3' bp-type ||| strand-2 3'-GGG-5' helix-form A. 1 A.C2549 A.G2574 C-G WC 19-XIX cWW cW-W 2 A.C2550 A.G2573 C-G WC 19-XIX cWW cW-W 3 A.U2551 A.G2572 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#140[#80] bps=5 strand-1 5'-GGGGC-3' bp-type ||||| strand-2 3'-CCCUG-5' helix-form A.A. 1 A.G2552 A.C2569 G-C WC 19-XIX cWW cW-W 2 A.G2553 A.C2568 G-C WC 19-XIX cWW cW-W 3 A.G2554 A.C2567 G-C WC 19-XIX cWW cW-W 4 A.G2555 A.U2566 G-U Wobble 28-XXVIII cWW cW-W 5 A.C2556 A.G2565 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#141[#80] bps=5 strand-1 5'-UGGGC-3' bp-type ||||| strand-2 3'-ACCCG-5' helix-form .AA. 1 A.U2576 A.A2590 U-A WC 20-XX cWW cW-W 2 A.G2577 A.C2589 G-C WC 19-XIX cWW cW-W 3 A.G2578 A.C2588 G-C WC 19-XIX cWW cW-W 4 A.G2579 A.C2587 G-C WC 19-XIX cWW cW-W 5 A.C2580 A.G2586 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#142[#58] bps=4 strand-1 5'-GAAC-3' bp-type |||| strand-2 3'-CUUG-5' helix-form AA. 1 A.G2617 A.C2635 G-C WC 19-XIX cWW cW-W 2 A.A2618 A.U2634 A-U WC 20-XX cWW cW-W 3 A.A2619 A.U2633 A-U WC 20-XX cWW cW-W 4 A.C2620 A.G2632 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#143[#58] bps=3 strand-1 5'-GUC-3' bp-type ||| strand-2 3'-CAG-5' helix-form AA 1 A.G2621 A.C2630 G-C WC 19-XIX cWW cW-W 2 A.U2622 A.A2629 U-A WC 20-XX cWW cW-W 3 A.C2623 A.G2628 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#144[#83] bps=7 strand-1 5'-GGAAAUU-3' bp-type ||||||| strand-2 3'-CCUUUAG-5' helix-form A.AAA. 1 A.G2659 A.C2817 G-C WC 19-XIX cWW cW-W 2 A.G2660 A.C2816 G-C WC 19-XIX cWW cW-W 3 A.A2661 A.U2815 A-U WC 20-XX cWW cW-W 4 A.A2662 A.U2814 A-U WC 20-XX cWW cW-W 5 A.A2663 A.U2813 A-U WC 20-XX cWW cW-W 6 A.U2664 A.A2812 U-A WC 20-XX cWW cW-W 7 A.U2665 A.G2811 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#145[#83] bps=4 strand-1 5'-GAGG-3' bp-type |||| strand-2 3'-CUCC-5' helix-form AAA 1 A.G2669 A.C2803 G-C WC 19-XIX cWW cW-W 2 A.A2670 A.U2802 A-U WC 20-XX cWW cW-W 3 A.G2671 A.C2801 G-C WC 19-XIX cWW cW-W 4 A.G2672 A.C2800 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#146[#82] bps=6 strand-1 5'-CUGUCC-3' bp-type |||||| strand-2 3'-GGUAGG-5' helix-form ..AA. 1 A.C2675 A.G2703 C-G WC 19-XIX cWW cW-W 2 A.U2676 A.G2702 U-G Wobble 28-XXVIII cWW cW-W 3 A.G2677 A.U2701 G-U Wobble 28-XXVIII cWW cW-W 4 A.U2678 A.A2700 U-A WC 20-XX cWW cW-W 5 A.C2679 A.G2699 C-G WC 19-XIX cWW cW-W 6 A.C2680 A.G2698 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#147[#82] bps=5 strand-1 5'-CGCAC-3' bp-type ||||| strand-2 3'-GCGUG-5' helix-form AAAA 1 A.C2705 A.G2760 C-G WC 19-XIX cWW cW-W 2 A.G2706 A.C2759 G-C WC 19-XIX cWW cW-W 3 A.C2707 A.G2758 C-G WC 19-XIX cWW cW-W 4 A.A2708 A.U2757 A-U WC 20-XX cWW cW-W 5 A.C2709 A.G2756 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#148[#82] bps=4 strand-1 5'-UGGU-3' bp-type |||| strand-2 3'-AUCG-5' helix-form ... 1 A.U2713 A.A2754 U-A WC 20-XX cWW cW-W 2 A.G2714 A.U2753 G-U Wobble 28-XXVIII cWW cW-W 3 A.G2715 A.C2752 G-C WC 19-XIX cWW cW-W 4 A.U2716 A.G2751 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#149[#82] bps=5 strand-1 5'-CCAGU-3' bp-type ||||| strand-2 3'-GGUCG-5' helix-form AAA. 1 A.C2720 A.G2747 C-G WC 19-XIX cWW cW-W 2 A.C2721 A.G2746 C-G WC 19-XIX cWW cW-W 3 A.A2722 A.U2745 A-U WC 20-XX cWW cW-W 4 A.G2723 A.C2744 G-C WC 19-XIX cWW cW-W 5 A.U2724 A.G2743 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#150[#82] bps=6 strand-1 5'-UGUUCU-3' bp-type |||||| strand-2 3'-ACGGGA-5' helix-form A.... 1 A.U2725 A.A2740 U-A WC 20-XX cWW cW-W 2 A.G2726 A.C2739 G-C WC 19-XIX cWW cW-W 3 A.U2727 A.G2738 U-G Wobble 28-XXVIII cWW cW-W 4 A.U2728 A.G2737 U-G Wobble 28-XXVIII cWW cW-W 5 A.C2729 A.G2736 C-G WC 19-XIX cWW cW-W 6 A.U2730 A.A2735 U-A WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#151[#83] bps=3 strand-1 5'-GGG-3' bp-type ||| strand-2 3'-CCC-5' helix-form A. 1 A.G2764 A.C2798 G-C WC 19-XIX cWW cW-W 2 A.G2765 A.C2797 G-C WC 19-XIX cWW cW-W 3 A.G2766 A.C2796 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#152[#83] bps=4 strand-1 5'-GUGC-3' bp-type |||| strand-2 3'-UACG-5' helix-form ..A 1 A.G2771 A.U2791 G-U Wobble 28-XXVIII cWW cW-W 2 A.U2772 A.A2790 U-A WC 20-XX cWW cW-W 3 A.G2773 A.C2789 G-C WC 19-XIX cWW cW-W 4 A.C2774 A.G2788 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#153[#84] bps=4 strand-1 5'-UUCC-3' bp-type |||| strand-2 3'-AAGG-5' helix-form AAA 1 A.U2820 A.A2831 U-A WC 20-XX cWW cW-W 2 A.U2821 A.A2830 U-A WC 20-XX cWW cW-W 3 A.C2822 A.G2829 C-G WC 19-XIX cWW cW-W 4 A.C2823 A.G2828 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#154[#84] bps=4 strand-1 5'-GAUC-3' bp-type |||| strand-2 3'-CUAG-5' helix-form AA. 1 A.G2836 A.C2914 G-C WC 19-XIX cWW cW-W 2 A.A2837 A.U2913 A-U WC 20-XX cWW cW-W 3 A.U2838 A.A2912 U-A WC 20-XX cWW cW-W 4 A.C2839 A.G2911 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#155[#84] bps=5 strand-1 5'-CCUGA-3' bp-type ||||| strand-2 3'-GGACU-5' helix-form A..A 1 A.C2840 A.G2856 C-G WC 19-XIX cWW cW-W 2 A.C2841 A.G2855 C-G WC 19-XIX cWW cW-W 3 A.U2842 A.A2854 U-A WC 20-XX cWW cW-W 4 A.G2843 A.C2853 G-C WC 19-XIX cWW cW-W 5 A.A2844 A.U2852 A-U WC 20-XX cWW cW-W -------------------------------------------------------------------------- stem#156[#85] bps=3 strand-1 5'-UAG-3' bp-type ||| strand-2 3'-AUC-5' helix-form AA 1 A.U2861 A.A2907 U-A WC 20-XX cWW cW-W 2 A.A2862 A.U2906 A-U WC 20-XX cWW cW-W 3 A.G2863 A.C2905 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#157[#85] bps=5 strand-1 5'-GUCUG-3' bp-type ||||| strand-2 3'-UAGAC-5' helix-form .AA. 1 A.G2864 A.U2903 G-U Wobble 28-XXVIII cWW cW-W 2 A.U2865 A.A2902 U-A WC 20-XX cWW cW-W 3 A.C2866 A.G2901 C-G WC 19-XIX cWW cW-W 4 A.U2867 A.A2900 U-A WC 20-XX cWW cW-W 5 A.G2868 A.C2899 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#158[#85] bps=3 strand-1 5'-GGU-3' bp-type ||| strand-2 3'-UCG-5' helix-form .. 1 A.G2870 A.U2896 G-U Wobble 28-XXVIII cWW cW-W 2 A.G2871 A.C2895 G-C WC 19-XIX cWW cW-W 3 A.U2872 A.G2894 U-G Wobble 28-XXVIII cWW cW-W -------------------------------------------------------------------------- stem#159[#85] bps=5 strand-1 5'-GUGUG-3' bp-type ||||| strand-2 3'-UACAC-5' helix-form .AAA 1 A.G2877 A.U2890 G-U Wobble 28-XXVIII cWW cW-W 2 A.U2878 A.A2889 U-A WC 20-XX cWW cW-W 3 A.G2879 A.C2888 G-C WC 19-XIX cWW cW-W 4 A.U2880 A.A2887 U-A WC 20-XX cWW cW-W 5 A.G2881 A.C2886 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#160[#86] bps=7 strand-1 5'-UGGUGGC-3' bp-type ||||||| strand-2 3'-ACCGCCG-5' helix-form ....AA 1 B.U3 B.A113 U-A WC 20-XX cWW cW-W 2 B.G4 B.C112 G-C WC 19-XIX cWW cW-W 3 B.G5 B.C111 G-C WC 19-XIX cWW cW-W 4 B.U6 B.G110 U-G Wobble 28-XXVIII cWW cW-W 5 B.G7 B.C109 G-C WC 19-XIX cWW cW-W 6 B.G8 B.C108 G-C WC 19-XIX cWW cW-W 7 B.C9 B.G107 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#161[#87] bps=2 strand-1 5'-GC-3' bp-type || strand-2 3'-CG-5' helix-form A 1 B.G14 B.C66 G-C WC 19-XIX cWW cW-W 2 B.C15 B.G65 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#162[#87] bps=6 strand-1 5'-GAAGAG-3' bp-type |||||| strand-2 3'-CUUCUC-5' helix-form .AA.. 1 B.G16 B.C63 G-C WC 19-XIX cWW cW-W 2 B.A17 B.U62 A-U WC 20-XX cWW cW-W 3 B.A18 B.U61 A-U WC 20-XX cWW cW-W 4 B.G19 B.C60 G-C WC 19-XIX cWW cW-W 5 B.A20 B.U59 A-U WC 20-XX cWW cW-W 6 B.G21 B.C58 G-C WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#163[#87] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form . 1 B.C29 B.G49 C-G WC 19-XIX cWW cW-W 2 B.C30 B.G48 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#164[#87] bps=2 strand-1 5'-CC-3' bp-type || strand-2 3'-GG-5' helix-form A 1 B.C68 B.G104 C-G WC 19-XIX cWW cW-W 2 B.C69 B.G103 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#165[#87] bps=5 strand-1 5'-GGGGG-3' bp-type ||||| strand-2 3'-CCCCC-5' helix-form AAAA 1 B.G80 B.C92 G-C WC 19-XIX cWW cW-W 2 B.G81 B.C91 G-C WC 19-XIX cWW cW-W 3 B.G82 B.C90 G-C WC 19-XIX cWW cW-W 4 B.G83 B.C89 G-C WC 19-XIX cWW cW-W 5 B.G84 B.C88 G-C WC 19-XIX cWW cW-W **************************************************************************** List of 61 isolated WC/wobble pairs Note: Isolated WC/wobble pairs are assigned negative indices to differentiate them from the stem numbers, which are positive. -------------------------------------------------------------------- [#2] -1 A.G30 A.C556 G-C WC 19-XIX cWW cW-W [#6] -2 A.C62 A.G92 C-G WC 19-XIX cWW cW-W [#4] -3 A.A67 A.U74 A-U WC 20-XX cWW cW-W [#8] -4 A.C152 A.G177 C-G WC 19-XIX cWW cW-W [#9] -5 A.C186 A.G217 C-G WC 19-XIX cWW cW-W [#9] -6 A.G197 A.C204 G-C WC 19-XIX cWW cW-W [#12] -7 A.C272 A.G417 C-G WC 19-XIX cWW cW-W [#16] -8 A.G300 A.C451 G-C WC 19-XIX cWW cW-W [#15] -9 A.G344 A.C360 G-C WC 19-XIX cWW cW-W [#15] -10 A.C363 A.G367 C-G WC 19-XIX cWW cW-W [#16] -11 A.U463 A.A2436 U-A WC 20-XX cWW cW-W [#19] -12 A.G528 A.C555 G-C WC 19-XIX cWW cW-W [#63] -13 A.U577 A.A2047 U-A WC 20-XX cWW cW-W [#39] -14 A.U591 A.A1269 U-A WC 20-XX cWW cW-W -- -15 A.U606 A.A2062 U-A WC 20-XX cWW cW-W [#63] -16 A.C608 A.G621 C-G WC 19-XIX cWW cW-W [#63] -17 A.U610 A.A619 U-A WC 20-XX cWW cW-W [#23] -18 A.G721 A.C853 G-C WC 19-XIX cWW cW-W [#29] -19 A.C745 A.G810 C-G WC 19-XIX cWW cW-W [#30] -20 A.U750 A.G775 U-G Wobble 28-XXVIII cWW cW-W [#31] -21 A.G776 A.C1803 G-C WC 19-XIX cWW cW-W -- -22 A.A799 A.U2638 A-U WC 20-XX cWW cW-W [#28] -23 A.G822 A.C838 G-C WC 19-XIX cWW cW-W [#33] -24 A.G909 A.C962 G-C WC 19-XIX cWW cW-W [#33] -25 A.G911 A.C959 G-C WC 19-XIX cWW cW-W [#38] -26 A.G1057 A.C1196 G-C WC 19-XIX cWW cW-W [#36] -27 A.G1070 A.C1186 G-C WC 19-XIX cWW cW-W [#37] -28 A.G1080 A.C1167 G-C WC 19-XIX cWW cW-W -- -29 A.C1095 A.G2780 C-G WC 19-XIX cWW cW-W [#34] -30 A.C1237 A.G1290 C-G WC 19-XIX cWW cW-W [#40] -31 A.A1302 A.U2046 A-U WC 20-XX cWW cW-W [#42] -32 A.U1352 A.A1648 U-A WC 20-XX cWW cW-W [#50] -33 A.A1490 A.U1595 A-U WC 20-XX cWW cW-W [#50] -34 A.G1496 A.U1507 G-U Wobble 28-XXVIII cWW cW-W [#82] -35 A.G1502 A.C2732 G-C WC 19-XIX cWW cW-W [#53] -36 A.C1519 A.G1566 C-G WC 19-XIX cWW cW-W [#53] -37 A.C1573 A.G1594 C-G WC 19-XIX cWW cW-W [#50] -38 A.C1613 A.G1616 C-G WC 19-XIX cWW cW-W [#55] -39 A.A1714 A.U2022 A-U WC 20-XX cWW cW-W [#55] -40 A.G1719 A.C2019 G-C WC 19-XIX cWW cW-W [#56] -41 A.C1736 A.G1741 C-G WC 19-XIX cWW cW-W [#55] -42 A.U1738 A.A1858 U-A WC 20-XX cWW cW-W [#57] -43 A.C1781 A.G1785 C-G WC 19-XIX cWW cW-W [#61] -44 A.G1875 A.C1924 G-C WC 19-XIX cWW cW-W [#63] -45 A.A2049 A.U2063 A-U WC 20-XX cWW cW-W [#46] -46 A.G2122 A.C2225 G-C WC 19-XIX cWW cW-W [#46] -47 A.A2124 A.U2223 A-U WC 20-XX cWW cW-W [#46] -48 A.G2139 A.C2208 G-C WC 19-XIX cWW cW-W [#68] -49 A.G2168 A.C2181 G-C WC 19-XIX cWW cW-W [#70] -50 A.C2324 A.G2366 C-G WC 19-XIX cWW cW-W [#71] -51 A.A2329 A.U2344 A-U WC 20-XX cWW cW-W [#71] -52 A.U2331 A.A2343 U-A WC 20-XX cWW cW-W [#72] -53 A.C2379 A.G2396 C-G WC 19-XIX cWW cW-W [#77] -54 A.C2490 A.G2519 C-G WC 19-XIX cWW cW-W [#78] -55 A.C2494 A.G2516 C-G WC 19-XIX cWW cW-W [#81] -56 A.C2655 A.G2806 C-G WC 19-XIX cWW cW-W [#82] -57 A.C2687 A.G2692 C-G WC 19-XIX cWW cW-W [#83] -58 A.C2818 A.G2918 C-G WC 19-XIX cWW cW-W [#87] -59 B.A27 B.U53 A-U WC 20-XX cWW cW-W [#87] -60 B.C36 B.G42 C-G WC 19-XIX cWW cW-W [#87] -61 B.U78 B.G94 U-G Wobble 28-XXVIII cWW cW-W **************************************************************************** List of 42 coaxial stacks 1 Helix#2 contains 5 stems: [#2,#3,#4,#5,#6] 2 Helix#4 contains 3 stems: [#8,#9,#10] 3 Helix#7 contains 2 stems: [#13,#14] 4 Helix#11 contains 2 stems: [#18,#19] 5 Helix#12 contains 3 stems: [#20,#21,#22] 6 Helix#13 contains 3 stems: [#25,#26,#27] 7 Helix#14 contains 2 stems: [#28,#31] 8 Helix#15 contains 2 stems: [#30,#29] 9 Helix#16 contains 3 stems: [#24,#23,#33] 10 Helix#22 contains 2 stems: [#36,#37] 11 Helix#24 contains 2 stems: [#39,#40] 12 Helix#25 contains 2 stems: [#41,#42] 13 Helix#28 contains 2 stems: [#46,#52] 14 Helix#30 contains 4 stems: [#49,#48,#50,#51] 15 Helix#32 contains 4 stems: [#54,#55,#56,#57] 16 Helix#33 contains 2 stems: [#59,#58] 17 Helix#34 contains 5 stems: [#61,#60,#53,#72,#73] 18 Helix#37 contains 3 stems: [#68,#69,#70] 19 Helix#38 contains 5 stems: [#67,#65,#64,#63,#71] 20 Helix#39 contains 2 stems: [#74,#75] 21 Helix#40 contains 4 stems: [#38,#76,#104,#105] 22 Helix#43 contains 2 stems: [#81,#82] 23 Helix#44 contains 3 stems: [#77,#78,#103] 24 Helix#46 contains 7 stems: [#85,#86,#133,#132,#127,#128,#129] 25 Helix#48 contains 4 stems: [#88,#83,#89,#90] 26 Helix#49 contains 2 stems: [#91,#92] 27 Helix#50 contains 4 stems: [#96,#95,#94,#93] 28 Helix#52 contains 2 stems: [#99,#100] 29 Helix#53 contains 2 stems: [#97,#101] 30 Helix#55 contains 3 stems: [#106,#110,#111] 31 Helix#57 contains 2 stems: [#109,#108] 32 Helix#58 contains 2 stems: [#142,#143] 33 Helix#61 contains 2 stems: [#115,#116] 34 Helix#64 contains 2 stems: [#122,#123] 35 Helix#65 contains 3 stems: [#124,#125,#126] 36 Helix#80 contains 3 stems: [#140,#139,#141] 37 Helix#81 contains 3 stems: [#121,#120,#119] 38 Helix#82 contains 5 stems: [#146,#147,#148,#149,#150] 39 Helix#83 contains 4 stems: [#152,#151,#145,#144] 40 Helix#84 contains 3 stems: [#153,#154,#155] 41 Helix#85 contains 4 stems: [#156,#157,#158,#159] 42 Helix#87 contains 5 stems: [#163,#162,#161,#164,#165] **************************************************************************** List of 569 base stacks Note: A stack is an ordered list of nucleotides assembled together via base-stacking interactions, regardless of backbone connectivity. Stacking interactions within a stem are *not* included. 1 nts=2 UU A.U8,A.U9 2 nts=2 AU A.A13,A.U571 3 nts=2 CU A.C32,A.U33 4 nts=2 GG A.G35,A.G493 5 nts=2 GC A.G36,A.C37 6 nts=2 GA A.G43,A.A44 7 nts=2 GG A.G48,A.G180 8 nts=2 UA A.U50,A.A176 9 nts=2 AC A.A56,A.C57 10 nts=2 AA A.A64,A.A65 11 nts=2 GU A.G70,A.U113 12 nts=2 AA A.A71,A.A73 13 nts=2 GC A.G75,A.C76 14 nts=2 GC A.G92,A.C93 15 nts=2 CU A.C97,A.U98 16 nts=2 GA A.G120,A.A130 17 nts=2 UG A.U159,A.G160 18 nts=2 GC A.G181,A.C182 19 nts=2 GR A.G184,U.ARG36 20 nts=2 AG A.A225,A.G227 21 nts=2 AG A.A231,A.G233 22 nts=2 CG A.C234,A.G235 23 nts=2 AG A.A279,A.G280 24 nts=2 GC A.G283,A.C284 25 nts=2 AC A.A305,A.C306 26 nts=2 CU A.C310,A.U311 27 nts=2 AG A.A314,A.G316 28 nts=2 GA A.G338,A.A388 29 nts=2 UG A.U340,A.G341 30 nts=2 GG A.G344,A.G361 31 nts=2 GC A.G346,A.C360 32 nts=2 CA A.C363,A.A364 33 nts=2 GG A.G367,A.G377 34 nts=2 GA A.G368,A.A369 35 nts=2 GU A.G371,A.U372 36 nts=2 AA A.A390,A.A391 37 nts=2 CU A.C392,A.U393 38 nts=2 UC A.U400,A.C401 39 nts=2 GG A.G410,A.G411 40 nts=2 AU A.A412,A.U413 41 nts=2 AU A.A418,A.U420 42 nts=2 CG A.C451,A.G453 43 nts=2 GC A.G489,A.C491 44 nts=2 AR A.A490,E.ARG45 45 nts=2 AG A.A496,A.G497 46 nts=2 CY A.C503,O.TYR69 47 nts=2 AU A.A504,A.U506 48 nts=2 GG A.G510,A.G514 49 nts=2 GC A.G521,A.C556 50 nts=2 AC A.A530,A.C531 51 nts=2 CG A.C534,A.G535 52 nts=2 AA A.A575,A.A2052 53 nts=2 CG A.C588,A.G589 54 nts=2 UG A.U591,A.G1259 55 nts=2 CY A.C594,M.TYR21 56 nts=2 CG A.C604,A.G605 57 nts=2 AG A.A618,A.G2061 58 nts=2 GC A.G631,A.C718 59 nts=2 UC A.U640,A.C641 60 nts=2 AG A.A646,A.G703 61 nts=2 AA A.A647,A.A702 62 nts=2 AG A.A656,A.G657 63 nts=2 AA A.A673,A.A683 64 nts=2 GG A.G674,A.G682 65 nts=2 GG A.G676,A.G680 66 nts=2 UG A.U687,A.G688 67 nts=2 CC A.C719,A.C720 68 nts=2 CC A.C744,A.C745 69 nts=2 GU A.G776,A.U1804 70 nts=2 CA A.C785,A.A786 71 nts=2 CG A.C791,A.G792 72 nts=2 UU A.U794,A.U2642 73 nts=2 AA A.A798,A.A836 74 nts=2 AG A.A799,A.G1810 75 nts=2 GG A.G804,A.G805 76 nts=2 AA A.A811,A.A828 77 nts=2 AG A.A830,A.G832 78 nts=2 UG A.U854,A.G855 79 nts=2 GU A.G856,A.U857 80 nts=2 UA A.U875,A.A876 81 nts=2 GG A.G878,A.G879 82 nts=2 AG A.A882,A.G883 83 nts=2 AC A.A913,A.C961 84 nts=2 CU A.C914,A.U915 85 nts=2 AC A.A957,A.C2293 86 nts=2 UA A.U977,A.A978 87 nts=2 GA A.G998,A.A999 88 nts=2 GC A.G1000,A.C1010 89 nts=2 GA A.G1002,A.A1008 90 nts=2 AA A.A1005,A.A1006 91 nts=2 AA A.A1026,A.A1027 92 nts=2 AG A.A1029,A.G1030 93 nts=2 CA A.C1033,A.A1034 94 nts=2 CF A.C1041,L.PHE57 95 nts=2 AG A.A1042,A.G1206 96 nts=2 CA A.C1051,A.A1189 97 nts=2 CA A.C1053,A.A1054 98 nts=2 GG A.G1070,A.G1071 99 nts=2 AG A.A1075,A.G1076 100 nts=2 GA A.G1077,A.A1078 101 nts=2 GA A.G1083,A.A1084 102 nts=2 CU A.C1089,A.U1090 103 nts=2 AC A.A1094,A.C1095 104 nts=2 GU A.G1153,A.U1154 105 nts=2 AG A.A1157,A.G1158 106 nts=2 CG A.C1170,A.G1171 107 nts=2 GH A.G1177,G.HIS78 108 nts=2 UY A.U1178,G.TYR76 109 nts=2 AA A.A1188,A.A1190 110 nts=2 UC A.U1195,A.C1196 111 nts=2 CG A.C1199,A.G1200 112 nts=2 AR A.A1202,L.ARG51 113 nts=2 GA A.G1209,A.A1210 114 nts=2 CU A.C1216,A.U1217 115 nts=2 GC A.G1236,A.C1237 116 nts=2 CU A.C1248,A.U1249 117 nts=2 GG A.G1263,A.G1267 118 nts=2 GA A.G1292,A.A1293 119 nts=2 UA A.U1295,A.A2089 120 nts=2 AU A.A1305,A.U1307 121 nts=2 AA A.A1313,A.A1691 122 nts=2 GG A.G1315,A.G1690 123 nts=2 CC A.C1333,A.C1334 124 nts=2 AG A.A1340,A.G1342 125 nts=2 CU A.C1344,A.U1345 126 nts=2 GU A.G1349,A.U1350 127 nts=2 GG A.G1358,A.G1359 128 nts=2 CR A.C1364,N.ARG86 129 nts=2 CC A.C1370,A.C1372 130 nts=2 GG A.G1382,A.G1642 131 nts=2 GA A.G1387,A.A1388 132 nts=2 GG A.G1403,A.G1407 133 nts=2 AA A.A1424,A.A1442 134 nts=2 GU A.G1428,A.U1429 135 nts=2 GA A.G1431,A.A1432 136 nts=2 CA A.C1463,A.A1464 137 nts=2 AU A.A1483,A.U1484 138 nts=2 UU A.U1505,A.U1507 139 nts=2 CC A.C1508,A.C1509 140 nts=2 CG A.C1511,A.G1512 141 nts=2 CU A.C1527,A.U1528 142 nts=2 AU A.A1534,A.U1535 143 nts=2 CG A.C1577,A.G1578 144 nts=2 GU A.G1586,A.U1587 145 nts=2 UU A.U1595,A.U1596 146 nts=2 UG A.U1599,A.G1600 147 nts=2 CC A.C1612,A.C1613 148 nts=2 AW A.A1614,C.TRP213 149 nts=2 CU A.C1625,A.U1626 150 nts=2 GA A.G1637,A.A1638 151 nts=2 GU A.G1646,A.U1647 152 nts=2 CG A.C1650,A.G1651 153 nts=2 AC A.A1653,A.C1656 154 nts=2 AG A.A1675,A.G1676 155 nts=2 GG A.G1711,A.G1712 156 nts=2 CU A.C1715,A.U1716 157 nts=2 CG A.C1717,A.G1718 158 nts=2 AU A.A1727,A.U1786 159 nts=2 GG A.G1744,A.G1792 160 nts=2 AG A.A1746,A.G1747 161 nts=2 UG A.U1756,A.G1757 162 nts=2 UG A.U1764,A.G1765 163 nts=2 CC A.C1780,A.C1781 164 nts=2 CA A.C1783,A.A1784 165 nts=2 GC A.G1799,A.C1800 166 nts=2 AA A.A1814,A.A1816 167 nts=2 AG A.A1820,A.G1821 168 nts=2 CG A.C1835,A.G1836 169 nts=2 AY A.A1845,C.TYR62 170 nts=2 UE A.U1849,C.GLU201 171 nts=2 GG A.G1884,A.G1917 172 nts=2 GU A.G1926,A.U1927 173 nts=2 GU A.G2009,A.U2011 174 nts=2 GA A.G2021,A.A2026 175 nts=2 UC A.U2024,A.C2025 176 nts=2 GG A.G2038,A.G2039 177 nts=2 GA A.G2090,A.A2091 178 nts=2 GA A.G2099,A.A2100 179 nts=2 UU A.U2103,A.U2104 180 nts=2 UF A.U2105,W.PHE319 181 nts=2 UG A.U2115,A.G2263 182 nts=2 GA A.G2116,A.A2262 183 nts=2 UU A.U2120,A.U2121 184 nts=2 UU A.U2127,A.U2128 185 nts=2 UA A.U2140,A.A2148 186 nts=2 AG A.A2143,A.G2144 187 nts=2 AC A.A2152,A.C2203 188 nts=2 GG A.G2153,A.G2154 189 nts=2 CA A.C2158,A.A2187 190 nts=2 UU A.U2159,A.U2160 191 nts=2 CG A.C2172,A.G2173 192 nts=2 AG A.A2176,A.G2177 193 nts=2 UU A.U2179,A.U2180 194 nts=2 GG A.G2188,A.G2189 195 nts=2 CA A.C2190,A.A2191 196 nts=2 UC A.U2192,A.C2193 197 nts=2 GA A.G2195,A.A2200 198 nts=2 GG A.G2197,A.G2199 199 nts=2 UA A.U2204,A.A2205 200 nts=2 UU A.U2217,A.U2218 201 nts=2 CU A.C2222,A.U2223 202 nts=2 CG A.C2243,A.G2244 203 nts=2 GG A.G2249,A.G2250 204 nts=2 UA A.U2273,A.A2463 205 nts=2 GC A.G2309,A.C2310 206 nts=2 CA A.C2312,A.A2417 207 nts=2 CG A.C2314,A.G2354 208 nts=2 AU A.A2330,A.U2331 209 nts=2 AU A.A2343,A.U2344 210 nts=2 AG A.A2351,A.G2352 211 nts=2 AA A.A2356,A.A2357 212 nts=2 CC A.C2384,A.C2385 213 nts=2 UC A.U2392,A.C2393 214 nts=2 GG A.G2399,A.G2400 215 nts=2 AU A.A2402,A.U2409 216 nts=2 UG A.U2419,A.G2420 217 nts=2 GG A.G2425,A.G2426 218 nts=2 UG A.U2427,A.G2428 219 nts=2 CG A.C2432,A.G2444 220 nts=2 CG A.C2433,A.G2434 221 nts=2 AU A.A2447,A.U2448 222 nts=2 AC A.A2454,A.C2456 223 nts=2 UC A.U2467,A.C2470 224 nts=2 AA A.A2488,A.A2526 225 nts=2 UC A.U2489,A.C2490 226 nts=2 UR A.U2521,W.ARG353 227 nts=2 CG A.C2549,A.G2596 228 nts=2 GG A.G2564,A.G2565 229 nts=2 GU A.G2574,A.U2575 230 nts=2 UA A.U2576,A.A2595 231 nts=2 UG A.U2581,A.G2586 232 nts=2 GU A.G2582,A.U2583 233 nts=2 UC A.U2584,A.C2585 234 nts=2 AA A.A2593,A.A2594 235 nts=2 GG A.G2621,A.G2632 236 nts=2 GG A.G2624,A.G2628 237 nts=2 UQ A.U2625,W.GLN318 238 nts=2 GA A.G2626,A.A2627 239 nts=2 CG A.C2646,A.G2647 240 nts=2 GC A.G2654,A.C2655 241 nts=2 GG A.G2659,A.G2918 242 nts=2 GG A.G2697,A.G2698 243 nts=2 UC A.U2718,A.C2742 244 nts=2 AY A.A2719,J.TYR3 245 nts=2 AG A.A2740,A.G2743 246 nts=2 AG A.A2754,A.G2756 247 nts=2 GG A.G2760,A.G2761 248 nts=2 CC A.C2798,A.C2799 249 nts=2 CG A.C2823,A.G2824 250 nts=2 CC A.C2839,A.C2840 251 nts=2 GG A.G2863,A.G2864 252 nts=2 GG A.G2881,A.G2882 253 nts=2 UG A.U2890,A.G2891 254 nts=2 AG A.A2893,A.G2894 255 nts=2 AA A.A2907,A.A2908 256 nts=2 AC A.A2924,A.C2925 257 nts=2 GR B.G10,Q.ARG79 258 nts=2 AG B.A13,B.G107 259 nts=2 GG B.G16,B.G65 260 nts=2 UC B.U33,B.C34 261 nts=2 AA B.A43,B.A44 262 nts=2 GA B.G49,B.A50 263 nts=2 CC B.C63,B.C106 264 nts=2 CG B.C69,B.G70 265 nts=2 AA B.A113,B.A114 266 nts=3 GAA A.G15,A.A14,A.A572 267 nts=3 AAG A.A52,A.A53,A.G54 268 nts=3 GUG A.G59,A.U74,A.G60 269 nts=3 CAC A.C66,A.A67,A.C68 270 nts=3 UAA A.U89,A.A90,A.A91 271 nts=3 GGR A.G122,A.G123,U.ARG19 272 nts=3 AAF A.A126,A.A125,U.PHE18 273 nts=3 CGU A.C136,A.G137,A.U138 274 nts=3 AAU A.A161,A.A162,A.U163 275 nts=3 GGG A.G191,A.G192,A.G208 276 nts=3 ACA A.A202,A.C201,A.A2459 277 nts=3 AAA A.A226,A.A469,A.A470 278 nts=3 GGC A.G245,A.G257,A.C256 279 nts=3 GGA A.G251,A.G253,A.A254 280 nts=3 CGG A.C252,A.G250,A.G255 281 nts=3 AUC A.A265,A.U266,A.C267 282 nts=3 ACU A.A281,A.C291,A.U292 283 nts=3 UGC A.U285,A.G287,A.C288 284 nts=3 GGG A.G295,A.G296,A.G297 285 nts=3 UCG A.U298,A.C272,A.G471 286 nts=3 AGC A.A302,A.G300,A.C468 287 nts=3 AGG A.A333,A.G334,A.G335 288 nts=3 UAA A.U336,A.A389,A.A337 289 nts=3 CUG A.C349,A.U350,A.G351 290 nts=3 AAC A.A355,A.A376,A.C379 291 nts=3 UGU A.U381,A.G382,A.U383 292 nts=3 GGG A.G419,A.G447,A.G446 293 nts=3 UAG A.U439,A.A438,A.G458 294 nts=3 ACC A.A459,A.C460,A.C461 295 nts=3 AAG A.A501,A.A494,A.G520 296 nts=3 GUC A.G523,A.U522,A.C555 297 nts=3 UGU A.U577,A.G2064,A.U2063 298 nts=3 AGF A.A578,A.G2050,L.PHE25 299 nts=3 AUA A.A592,A.U590,A.A1260 300 nts=3 UUF A.U633,A.U632,E.PHE90 301 nts=3 GGC A.G648,A.G671,A.C672 302 nts=3 GUG A.G665,A.U651,A.G666 303 nts=3 AAA A.A677,A.A678,A.A679 304 nts=3 GUG A.G707,A.U708,A.G709 305 nts=3 GGU A.G759,A.G760,A.U761 306 nts=3 UGG A.U809,A.G810,A.G812 307 nts=3 GGA A.G824,A.G822,A.A841 308 nts=3 UGA A.U826,A.G827,A.A829 309 nts=3 CAG A.C885,A.A987,A.G988 310 nts=3 GAA A.G891,A.A894,A.A893 311 nts=3 GUC A.G895,A.U979,A.C980 312 nts=3 CUU A.C899,A.U900,A.U901 313 nts=3 UGC A.U907,A.G963,A.C962 314 nts=3 AUU A.A917,A.U918,A.U919 315 nts=3 GGA A.G920,A.G921,A.A922 316 nts=3 AGU A.A952,A.G953,A.U954 317 nts=3 ACU A.A956,A.C959,A.U960 318 nts=3 UGC A.U966,A.G967,A.C968 319 nts=3 GAA A.G1022,A.A1021,A.A1036 320 nts=3 GAC A.G1024,A.A1025,A.C1028 321 nts=3 UAA A.U1050,A.A1056,A.A1055 322 nts=3 AGA A.A1059,A.G1057,A.A1197 323 nts=3 AAU A.A1066,A.A1067,A.U1069 324 nts=3 GGC A.G1082,A.G1166,A.C1167 325 nts=3 AAG A.A1097,A.A1096,A.G2780 326 nts=3 AAA A.A1175,A.A1174,A.A2547 327 nts=3 GGC A.G1247,A.G1280,A.C1281 328 nts=3 CAC A.C1261,A.A1269,A.C1270 329 nts=3 GAA A.G1264,A.A1265,A.A1266 330 nts=3 AUR A.A1287,A.U1289,I.ARG18 331 nts=3 GUG A.G1320,A.U1321,A.G1322 332 nts=3 CGU A.C1337,A.G1338,A.U1684 333 nts=3 UAC A.U1351,A.A1648,A.C1649 334 nts=3 AAG A.A1360,A.A1361,A.G1362 335 nts=3 GAA A.G1371,A.A1654,A.A1661 336 nts=3 GGU A.G1377,A.G1378,A.U1379 337 nts=3 CAU A.C1384,A.A1381,A.U1436 338 nts=3 AAA A.A1404,A.A1405,A.A1406 339 nts=3 GAC A.G1420,A.A1421,A.C1422 340 nts=3 UAC A.U1433,A.A1434,A.C1437 341 nts=3 CAU A.C1455,A.A1456,A.U1457 342 nts=3 GAA A.G1462,A.A1461,A.A1631 343 nts=3 UGC A.U1498,A.G2731,A.C2732 344 nts=3 UGG A.U1501,A.G1502,A.G1503 345 nts=3 GGU A.G1537,A.G1546,A.U1547 346 nts=3 CAU A.C1552,A.A1553,A.U1554 347 nts=3 AAG A.A1555,A.A1556,A.G1557 348 nts=3 CUG A.C1652,A.U1666,A.G1665 349 nts=3 GAG A.G1696,A.A1697,A.G1698 350 nts=3 AAC A.A1699,A.A1700,A.C1701 351 nts=3 AAU A.A1710,A.A1709,A.U2755 352 nts=3 GGG A.G1752,A.G1785,A.G1782 353 nts=3 UGC A.U1759,A.G1773,A.C1772 354 nts=3 UUA A.U1806,A.U1807,A.A1813 355 nts=3 CAA A.C1811,A.A2616,A.A1812 356 nts=3 GAA A.G1828,A.A1848,A.A1850 357 nts=3 GAC A.G2033,A.A2034,A.C2035 358 nts=3 GUG A.G2056,A.U2057,A.G2058 359 nts=3 CAA A.C2079,A.A2080,A.A2643 360 nts=3 GAA A.G2086,A.A2087,A.A2088 361 nts=3 CCC A.C2092,A.C2093,A.C2094 362 nts=3 GCC A.G2096,A.C2472,A.C2471 363 nts=3 AGC A.A2111,A.G2112,A.C2113 364 nts=3 AGU A.A2163,A.G2185,A.U2184 365 nts=3 AAC A.A2164,A.A2165,A.C2166 366 nts=3 CCU A.C2207,A.C2208,A.U2209 367 nts=3 CUA A.C2238,A.U2239,A.A2241 368 nts=3 CAG A.C2255,A.A2256,A.G2257 369 nts=3 AGG A.A2298,A.G2299,A.G2300 370 nts=3 AUA A.A2316,A.U2373,A.A2375 371 nts=3 GAG A.G2318,A.A2317,A.G2319 372 nts=3 GGC A.G2332,A.G2333,A.C2342 373 nts=3 AGA A.A2358,A.G2360,A.A2364 374 nts=3 CGG A.C2376,A.G2374,A.G2401 375 nts=3 CGA A.C2379,A.G2378,A.A2398 376 nts=3 GGC A.G2380,A.G2396,A.C2397 377 nts=3 GGA A.G2404,A.G2408,A.A2407 378 nts=3 CGC A.C2424,A.G2450,A.C2449 379 nts=3 GCC A.G2429,A.C2446,A.C2445 380 nts=3 ACG A.A2455,A.C2453,A.G2458 381 nts=3 GGA A.G2515,A.G2516,A.A2517 382 nts=3 GGU A.G2518,A.G2519,A.U2520 383 nts=3 GAG A.G2552,A.A2794,A.G2572 384 nts=3 CUU A.C2556,A.U2557,A.U2559 385 nts=3 AUU A.A2590,A.U2591,A.U2592 386 nts=3 GGG A.G2617,A.G2636,A.G2637 387 nts=3 GAG A.G2672,A.A2673,A.G2674 388 nts=3 AGA A.A2689,A.G2690,A.A2691 389 nts=3 GAC A.G2703,A.A2704,A.C2705 390 nts=3 GCU A.G2711,A.C2712,A.U2713 391 nts=3 CAA A.C2733,A.A2734,A.A2735 392 nts=3 UAG A.U2749,A.A2750,A.G2751 393 nts=3 ACG A.A2762,A.C2763,A.G2764 394 nts=3 CCA A.C2817,A.C2818,A.A2819 395 nts=3 AAG A.A2844,A.A2846,A.G2847 396 nts=3 GAA A.G2859,A.A2904,A.A2860 397 nts=3 GAG A.G2868,A.A2869,A.G2870 398 nts=3 AAG A.A2875,A.A2876,A.G2877 399 nts=3 CGA A.C2883,A.G2884,A.A2885 400 nts=3 UCG A.U2909,A.C2910,A.G2911 401 nts=3 GGC B.G14,B.G67,B.C68 402 nts=3 GGU B.G21,B.G22,B.U54 403 nts=3 CCC B.C36,B.C35,B.C47 404 nts=3 AGU B.A51,B.G52,B.U53 405 nts=3 AAG B.A64,B.A105,B.G104 406 nts=4 CAAA A.C62,A.A61,A.A94,A.A95 407 nts=4 AAUC A.A84,A.A102,A.U103,A.C104 408 nts=4 GAUU A.G109,A.A110,A.U111,A.U112 409 nts=4 AAAG A.A275,A.A274,A.A273,A.G417 410 nts=4 UGUG A.U313,A.G312,A.U405,A.G406 411 nts=4 UAAA A.U320,A.A326,A.A325,A.A324 412 nts=4 ACCA A.A429,A.C430,A.C432,A.A431 413 nts=4 UGAA A.U434,A.G435,A.A437,A.A436 414 nts=4 AGGU A.A582,A.G583,A.G599,A.U598 415 nts=4 GAAU A.G585,A.A584,A.A600,A.U601 416 nts=4 GAAC A.G617,A.A616,A.A2062,A.C2065 417 nts=4 AAUG A.A623,A.A1302,A.U1303,A.G1304 418 nts=4 AGAU A.A658,A.G660,A.A661,A.U662 419 nts=4 AAAG A.A689,A.A690,A.A692,A.G693 420 nts=4 AAGG A.A715,A.A717,A.G716,A.G848 421 nts=4 CGAG A.C779,A.G780,A.A808,A.G807 422 nts=4 GAAU A.G846,A.A847,A.A849,A.U850 423 nts=4 CGGU A.C859,A.G1290,A.G1238,A.U1239 424 nts=4 CGAU A.C1017,A.G1018,A.A1019,A.U1229 425 nts=4 UGGC A.U1081,A.G1080,A.G1168,A.C1169 426 nts=4 UGGC A.U1091,A.G1093,A.G1156,A.C1155 427 nts=4 AAAC A.A1172,A.A1073,A.A1072,A.C1180 428 nts=4 AAGG A.A1243,A.A1244,A.G1245,A.G1246 429 nts=4 GGGU A.G1252,A.G1276,A.G1275,A.U1274 430 nts=4 CUGC A.C1390,A.U1391,A.G1416,A.C1415 431 nts=4 CGGC A.C1396,A.G1397,A.G1410,A.C1409 432 nts=4 GAAG A.G1399,A.A1398,A.A1412,A.G1413 433 nts=4 UGGC A.U1458,A.G1460,A.G1630,A.C1629 434 nts=4 GAAG A.G1467,A.A1465,A.A1627,A.G1628 435 nts=4 GGAY A.G1475,A.G1616,A.A1615,C.TYR83 436 nts=4 GGAG A.G1478,A.G1479,A.A1480,A.G1481 437 nts=4 GAAU A.G1486,A.A1485,A.A1601,A.U1603 438 nts=4 UAGC A.U1523,A.A1562,A.G1563,A.C1564 439 nts=4 GAAA A.G1538,A.A1542,A.A1541,A.A1540 440 nts=4 CAAC A.C1605,A.A1606,A.A1608,A.C1609 441 nts=4 CCGG A.C1660,A.C1662,A.G1658,A.G1664 442 nts=4 CGAA A.C1670,A.G1671,A.A1339,A.A1679 443 nts=4 AAAG A.A1672,A.A1685,A.A1686,A.G1687 444 nts=4 AGAU A.A1677,A.G1678,A.A1680,A.U1681 445 nts=4 GAUC A.G1719,A.A1713,A.U2022,A.C2023 446 nts=4 UAAC A.U1738,A.A2006,A.A2007,A.C2008 447 nts=4 CAAG A.C1766,A.A1767,A.A1768,A.G1769 448 nts=4 AAUA A.A1788,A.A1789,A.U1790,A.A1791 449 nts=4 GACU A.G1793,A.A2018,A.C2019,A.U2020 450 nts=4 CAAG A.C1829,A.A1831,A.A1832,A.G1833 451 nts=4 UAAG A.U1837,A.A1838,A.A1839,A.G1840 452 nts=4 UGGR A.U2040,A.G2041,A.G1306,N.ARG15 453 nts=4 CGGC A.C2072,A.G2806,A.G2656,A.C2657 454 nts=4 GGGA A.G2130,A.G2129,A.G2219,A.A2220 455 nts=4 GGUG A.G2149,A.G2139,A.U2138,A.G2210 456 nts=4 GUGG A.G2264,A.U2265,A.G2266,A.G2268 457 nts=4 GCAG A.G2306,A.C2292,A.A2307,A.G2308 458 nts=4 AUGG A.A2362,A.U2325,A.G2366,A.G2367 459 nts=4 AGAA A.A2383,A.G2382,A.A2381,A.A2395 460 nts=4 CGUN A.C2469,A.G839,A.U831,C.ASN226 461 nts=4 AAGG A.A2497,A.A2498,A.G2513,A.G2514 462 nts=4 CGGY A.C2525,A.G2524,A.G2523,W.TYR384 463 nts=4 AGUC A.A2560,A.G2561,A.U2562,A.C2563 464 nts=4 GAAA A.G2669,A.A2668,A.A2807,A.A2805 465 nts=4 GGGG A.G2684,A.G2693,A.G2692,A.G2688 466 nts=4 UGGG A.U2716,A.G2717,A.G2748,A.G2747 467 nts=4 CAAG A.C2825,A.A2826,A.A2827,A.G2828 468 nts=4 UGGR A.U2872,A.G2873,A.G2892,K.ARG24 469 nts=4 GUGG B.G42,B.U32,B.G31,B.G48 470 nts=4 AAGC B.A55,B.A56,B.G57,B.C58 471 nts=5 AGAAA A.A12,A.G11,A.A10,A.A2658,A.A2919 472 nts=5 GGGAG A.G45,A.G218,A.G217,A.A216,A.G215 473 nts=5 GGGGU A.G81,A.G82,A.G83,A.G101,A.U99 474 nts=5 UAUCC A.U119,A.A150,A.U151,A.C152,A.C153 475 nts=5 CAACC A.C186,A.A185,A.A183,A.C482,A.C483 476 nts=5 CUAAU A.C204,A.U205,A.A206,A.A207,A.U209 477 nts=5 CAAAU A.C228,A.A229,A.A230,A.A2436,A.U2437 478 nts=5 UUAAG A.U238,A.U237,A.A236,A.A224,A.G269 479 nts=5 CUGAU A.C241,A.U242,A.G243,A.A244,A.U246 480 nts=5 AAAAG A.A343,A.A342,A.A366,A.A384,A.G385 481 nts=5 CAAAU A.C422,A.A421,A.A448,A.A449,A.U450 482 nts=5 GAGUG A.G542,A.A543,A.G544,A.U545,A.G546 483 nts=5 GAAAG A.G654,A.A653,A.A652,A.A667,A.G668 484 nts=5 GGCAU A.G684,A.G697,A.C698,A.A699,A.U700 485 nts=5 UGAAU A.U730,A.G731,A.A821,A.A732,A.U820 486 nts=5 GAAAC A.G747,A.A746,A.A781,A.A782,A.C783 487 nts=5 AACAC A.A762,A.A763,A.C764,A.A765,A.C766 488 nts=5 GAAAA A.G795,A.A797,A.A796,A.A1663,A.A1312 489 nts=5 GAAUU A.G946,A.A947,A.A948,A.U949,A.U950 490 nts=5 GAAAG A.G1048,A.A1047,A.A1046,A.A1201,A.G1203 491 nts=5 CGCGU A.C1181,A.G1185,A.C1186,A.G1068,A.U1187 492 nts=5 GAAAG A.G1250,A.A1277,A.A1253,A.A1254,A.G1255 493 nts=5 GGAUR A.G1296,A.G629,A.A1291,A.U858,I.ARG21 494 nts=5 AUCGG A.A1326,A.U1327,A.C1366,A.G1367,A.G1363 495 nts=5 GAAAG A.G1348,A.A1347,A.A1346,A.A1667,A.G1668 496 nts=5 GAAAG A.G1394,A.A1393,A.A1392,A.A1417,A.G1419 497 nts=5 GGGAC A.G1470,A.G1471,A.G1472,A.A1473,A.C1474 498 nts=5 GUAAG A.G1488,A.U1489,A.A1490,A.A1491,A.G1492 499 nts=5 GCGGA A.G1494,A.C1495,A.G1496,A.G1497,A.A1504 500 nts=5 GUGAG A.G1566,A.U1567,A.G1568,A.A1569,A.G1571 501 nts=5 GCGGC A.G1572,A.C1573,A.G1574,A.G1591,A.C1590 502 nts=5 GAAGA A.G1761,A.A1760,A.A1774,A.G1775,A.A1776 503 nts=5 GACGU A.G1805,A.A1818,A.C1819,A.G1857,A.U1856 504 nts=5 CGAGU A.C1842,A.G1843,A.A1844,A.G1846,A.U1847 505 nts=5 GGUGC A.G1868,A.G1869,A.U1870,A.G1871,A.C1872 506 nts=5 UGGAA A.U1873,A.G1874,A.G1875,A.A1876,A.A1877 507 nts=5 AAAAG A.A1883,A.A1882,A.A1918,A.A1919,A.G1920 508 nts=5 AGGGC A.A1885,A.G1886,A.G1887,A.G1912,A.C1911 509 nts=5 GAGGG A.G2171,A.A2170,A.G2169,A.G2168,A.G2182 510 nts=5 CUGAG A.C2225,A.U2226,A.G2253,A.A2252,A.G2251 511 nts=5 UUCCC A.U2320,A.U2321,A.C2322,A.C2323,A.C2324 512 nts=5 AGACA A.A2329,A.G2328,A.A2327,A.C2326,A.A2349 513 nts=5 GAGCU A.G2368,A.A2369,A.G2370,A.C2371,A.U2372 514 nts=5 ACAAG A.A2387,A.C2388,A.A2389,A.A2390,A.G2391 515 nts=5 CCCCC A.C2492,A.C2493,A.C2494,A.C2495,A.C2496 516 nts=5 CAUAC A.C2546,A.A2571,A.U2548,A.A2570,A.C2569 517 nts=5 CUUAU A.C2680,A.U2681,A.U2682,A.A2683,A.U2685 518 nts=5 CAACC A.C2687,A.A2686,A.A2694,A.C2695,A.C2696 519 nts=5 GAUGU A.G2766,A.A2767,A.U2768,A.G2792,A.U2791 520 nts=5 CAGUG A.C2803,A.A2804,A.G2667,A.U2666,A.G2811 521 nts=5 AGUGC A.A2831,A.G2832,A.U2833,A.G2915,A.C2914 522 nts=5 AUGAU A.A2848,A.U2849,A.G2850,A.A2851,A.U2852 523 nts=6 UAAAAC A.U29,A.A28,A.A559,A.A560,A.A561,A.C562 524 nts=6 GGUAAC A.G143,A.G142,A.U141,A.A140,A.A139,A.C1449 525 nts=6 CAUAGG A.C165,A.A166,A.U167,A.A168,A.G169,A.G170 526 nts=6 GAAAAC A.G248,A.A247,A.A258,A.A259,A.A260,A.C261 527 nts=6 CAAAAA A.C323,A.A322,A.A268,A.A475,A.A476,A.A477 528 nts=6 UAGGGG A.U498,A.A500,A.G499,A.G505,A.G516,A.G515 529 nts=6 CAAAAC A.C502,A.A519,A.A518,A.A517,A.A507,A.C508 530 nts=6 AGUACU A.A513,A.G512,A.U511,A.A835,A.C734,A.U735 531 nts=6 GUGGGU A.G749,A.U750,A.G751,A.G773,A.G772,A.U771 532 nts=6 GAAAGC A.G754,A.A753,A.A752,A.A774,A.G775,A.C777 533 nts=6 CGGGAG A.C864,A.G865,A.G1228,A.G1227,A.A1020,A.G1035 534 nts=6 GAAAAG A.G992,A.A868,A.A867,A.A866,A.A1230,A.G1231 535 nts=6 UGAAAG A.U1513,A.G1594,A.A1593,A.A1592,A.A1575,A.G1576 536 nts=6 UAAAAG A.U1584,A.A1581,A.A1580,A.A1579,A.A1588,A.G1589 537 nts=6 AAAAGC A.A1617,A.A1618,A.A1619,A.A1620,A.G1621,A.C1622 538 nts=6 CUCAAA A.C1739,A.U1737,A.C1736,A.A1735,A.A1734,A.A1745 539 nts=6 GGCCCA A.G1879,A.G1878,A.C1923,A.C1922,A.C1924,A.A1925 540 nts=6 CGAAAU A.C1890,A.G1889,A.A1888,A.A1913,A.A1914,A.U1915 541 nts=6 CGGCUC A.C2536,A.G2537,A.G2538,A.C2539,A.U2540,A.C2541 542 nts=6 GAAAGC A.G2771,A.A2770,A.A2769,A.A2793,A.G2795,A.C2796 543 nts=6 CUGUAC A.C2774,A.U2775,A.G2776,A.U2783,A.A2782,A.C2781 544 nts=6 AAAAAG A.A2779,A.A2778,A.A2777,A.A2786,A.A2787,A.G2788 545 nts=6 UGAAAG A.U2820,A.G2917,A.A2916,A.A2834,A.A2835,A.G2836 546 nts=6 UCACAC B.U23,B.C24,B.A25,B.C26,B.A27,B.C28 547 nts=7 AAAAAGA A.A373,A.A524,A.A525,A.A527,A.A526,A.G528,A.A553 548 nts=7 CAAAAGC A.C725,A.A724,A.A723,A.A722,A.A851,A.G852,A.C853 549 nts=7 CGAGAAA A.C912,A.G911,A.A910,A.G909,A.A908,A.A964,A.A965 550 nts=7 GGACUGC A.G1088,A.G1160,A.A1161,A.C1162,A.U1163,A.G1085,A.C1164 551 nts=7 GAAAAUU A.G1309,A.A1308,A.A2042,A.A2043,A.A2044,A.U2045,A.U2046 552 nts=7 CGUAGGG A.C1731,A.G1732,A.U1733,A.A1743,A.G1742,A.G1741,A.G1740 553 nts=7 CAACGCC A.C1803,A.A1802,A.A1858,A.C1859,A.G1860,A.C1861,A.C1862 554 nts=7 UUAACUA A.U2069,A.U2070,A.A2071,A.A574,A.C573,A.U2808,A.A2810 555 nts=8 GUGGGUGC A.G24,A.U25,A.G26,A.G27,A.G558,A.U557,A.G30,A.C31 556 nts=8 AGUCAAAC A.A198,A.G197,A.U196,A.C195,A.A194,A.A193,A.A210,A.C211 557 nts=8 CUAGGAAG A.C464,A.U463,A.A462,A.G2438,A.G2439,A.A2440,A.A2441,A.G2442 558 nts=8 UGAGAAAC A.U474,A.G223,A.A222,A.G221,A.A220,A.A219,A.A479,A.C480 559 nts=8 UGAUAUGA A.U613,A.G614,A.A2059,A.U615,A.A619,A.U620,A.G621,A.A622 560 nts=8 GAGGAAUG A.G905,A.A904,A.G903,A.G902,A.A970,A.A971,A.U972,A.G973 561 nts=8 GUAAAACH A.G1726,A.U1725,A.A1724,A.A1723,A.A1722,A.A1721,A.C1720,D.HIS135 562 nts=8 GUAAGAAC A.G2126,A.U2125,A.A2124,A.A2123,A.G2122,A.A2254,A.A2228,A.C2229 563 nts=8 UGAAGAGU B.U78,B.G77,B.A76,B.A97,B.G98,B.A99,B.G100,B.U101 564 nts=9 CGAAAAAGG A.C115,A.G116,A.A118,A.A117,A.A49,A.A179,A.A178,A.G177,A.G175 565 nts=9 GAAGAGUAC A.G539,A.A538,A.A537,A.G536,A.A1323,A.G1324,A.U1368,A.A1325,A.C1328 566 nts=10 UUUCCGAUAU A.U612,A.U611,A.U610,A.C609,A.C608,A.G607,A.A2047,A.U2048,A.A2049,A.U2051 567 nts=10 CAAGCAGUGA A.C1515,A.A1516,A.A1517,A.G1518,A.C1519,A.A1520,A.G1521,A.U1522,A.G1561,A.A1524 568 nts=11 GAAAGAAAAGC A.G356,A.A354,A.A374,A.A353,A.G352,A.A547,A.A548,A.A551,A.A549,A.G552,A.C529 569 nts=12 GCGUGUGGUAAG B.G80,B.C79,B.G94,B.U95,B.G96,B.U75,B.G74,B.G73,B.U72,B.A71,B.A102,B.G103 **************************************************************************** Nucleotides not involved in stacking interactions nts=243 UGUUCACUCAAUUUUCUAUCGUCUUUGUGUAAUGCGUUGUCAUUUGUCACAAUGCCUUAUUUACAUAUCUCUUUUAGAUUCUCAUUCUUAUAACUUCUUUAACUCCAAUCUAUGUAAGUGCCUAACAACCUACGAUAGCCCGGGUUAUACGCUUGUUAAAUAACGGAUUCGCGUUCCAUGCAACGGGCUUGAUCUCCUGUAAAUUGAUCCCCCUCCGUUCUCAUUGCGACUAUAUACCAUUgg A.U34,A.G63,A.U72,A.U100,A.C114,A.A124,A.C127,A.U164,A.C187,A.A199,A.A200,A.U203,A.U232,A.U299,A.U301,A.C315,A.U321,A.A345,A.U365,A.C375,A.G433,A.U440,A.C452,A.U478,A.U481,A.U495,A.G550,A.U554,A.G576,A.U606,A.A630,A.A659,A.U691,A.G701,A.C712,A.G721,A.U733,A.U793,A.G823,A.U837,A.C838,A.A840,A.U869,A.U873,A.U874,A.G877,A.U892,A.C945,A.A958,A.C990,A.A991,A.A1003,A.U1004,A.G1007,A.C1011,A.C1031,A.U1058,A.U1065,A.A1074,A.U1079,A.U1086,A.U1087,A.A1092,A.C1098,A.A1173,A.U1176,A.A1179,A.U1218,A.C1219,A.U1240,A.C1241,A.U1251,A.U1271,A.U1282,A.U1283,A.A1294,A.G1311,A.A1314,A.U1341,A.U1352,A.C1353,A.U1380,A.C1389,A.A1423,A.U1430,A.U1435,A.C1450,A.U1459,A.U1466,A.A1499,A.U1500,A.A1506,A.A1536,A.C1539,A.U1543,A.U1549,A.C1550,A.U1565,A.U1570,A.U1582,A.A1583,A.A1585,A.C1597,A.U1602,A.C1607,A.C1643,A.A1655,A.A1659,A.U1692,A.C1703,A.U1708,A.A1714,A.U1758,A.G1787,A.U1808,A.A1809,A.A1815,A.G1830,A.U1863,A.G1864,A.C1866,A.C1867,A.U1881,A.A1928,A.A1929,A.C2005,A.A2010,A.A2060,A.C2084,A.C2095,A.U2097,A.A2141,A.C2142,A.G2145,A.A2146,A.U2147,A.A2155,A.G2161,A.C2167,A.C2174,A.C2175,A.G2183,A.G2186,A.G2194,A.U2196,A.U2201,A.A2202,A.U2224,A.A2227,A.C2230,A.G2232,A.C2233,A.U2240,A.U2242,A.G2267,A.U2291,A.U2294,A.A2295,A.A2296,A.A2297,A.U2301,A.A2302,A.A2303,A.C2304,A.G2305,A.G2311,A.A2315,A.U2341,A.U2345,A.C2346,A.G2347,A.C2348,A.G2350,A.U2353,A.U2355,A.C2361,A.C2363,A.A2365,A.U2386,A.G2394,A.C2403,A.A2405,A.A2406,A.C2410,A.G2411,A.G2412,A.G2413,A.C2414,A.U2415,A.U2416,A.G2418,A.A2421,A.U2422,A.C2423,A.U2431,A.C2435,A.C2451,A.U2452,A.G2457,A.U2460,A.A2461,A.A2462,A.A2468,A.U2491,A.U2522,A.G2558,A.A2631,A.U2638,A.C2639,A.C2640,A.C2641,A.C2675,A.C2710,A.U2741,A.C2784,A.C2800,A.G2809,A.U2814,A.U2815,A.C2816,A.U2821,A.C2822,A.A2845,A.U2858,A.U2861,A.G2874,A.C2886,A.G2897,A.A2898,A.C2899,B.U3,B.A11,B.U12,B.A37,B.U38,B.A39,B.C40,B.C41,B.A46,B.U85,B.U86,W.GNP501,W.GNP502 **************************************************************************** List of 208 atom-base capping interactions dv: vertical distance of the atom above the nucleotide base ----------------------------------------------------------- type atom nt dv 1 sugar O2'@A.G218 A.G45 3.07 2 sugar O4'@A.G59 A.A73 3.11 3 sugar O4'@A.A90 A.A91 2.84 4 sugar O4'@A.A56 A.A126 3.34 5 phosphate OP2@A.A140 A.U138 2.88 6 sugar O4'@A.U119 A.A150 3.33 7 phosphate OP2@A.U167 A.G160 2.68 8 phosphate O3'@A.A200 A.A198 3.03 9 other P@A.C201 A.A198 3.35 10 phosphate OP1@A.C201 A.A198 2.73 11 sugar O2'@A.A202 A.C204 2.75 12 sugar O4'@A.G455 A.A226 3.36 13 sugar O4'@A.A2436 A.A230 3.12 14 phosphate OP1@A.A231 A.A231 2.70 15 sugar O4'@A.G233 A.A231 3.01 16 other P@A.U286 A.C284 3.47 17 phosphate OP1@A.U286 A.C284 2.97 18 sugar O4'@A.G287 A.U286 3.36 19 sugar O4'@A.C288 A.G287 3.01 20 sugar O4'@A.C323 A.A322 3.44 21 sugar O4'@A.C378 A.A343 3.32 22 phosphate OP2@A.A353 A.G351 2.92 23 sugar O2'@A.A374 A.A355 3.35 24 sugar O2'@A.A353 A.A373 3.20 25 sugar O4'@A.A355 A.A376 3.31 26 sugar O4'@A.G411 A.G410 2.88 27 sugar O4'@A.U434 A.G435 2.86 28 sugar O4'@A.A500 A.A504 3.49 29 other NZ@U.LYS37 A.G505 2.93 30 phosphate OP2@A.G512 A.G510 2.99 31 phosphate OP2@A.A525 A.G523 3.03 32 sugar O4'@A.G528 A.A526 2.78 33 sugar O4'@A.C531 A.A530 3.06 34 phosphate OP2@A.A537 A.G535 2.80 35 phosphate OP2@A.A548 A.G546 3.00 36 sugar O4'@A.A553 A.C555 3.14 37 sugar O2'@A.U2808 A.C573 3.14 38 sugar O2'@A.G2050 A.G576 3.41 39 sugar O4'@A.C2065 A.U606 3.17 40 phosphate OP2@A.G614 A.U612 3.09 41 sugar O4'@A.C718 A.G631 2.97 42 sugar O4'@A.G668 A.A667 3.14 43 phosphate OP2@A.A678 A.G676 3.18 44 phosphate OP1@A.G716 A.G716 3.21 45 sugar O4'@A.A763 A.A762 3.02 46 sugar O4'@A.C783 A.A782 3.13 47 sugar O4'@A.U809 A.G810 3.13 48 sugar O4'@A.U1806 A.A828 3.36 49 sugar O4'@A.G839 A.A840 2.87 50 sugar O4'@A.A849 A.A847 3.31 51 phosphate OP2@A.U873 A.U873 2.85 52 sugar O4'@A.A893 A.A894 3.41 53 sugar O2'@A.U900 A.U901 2.90 54 sugar O4'@A.C912 A.A913 3.42 55 sugar O4'@A.U918 A.A917 3.33 56 sugar O2'@A.U918 A.A917 3.39 57 phosphate O3'@A.U2294 A.A957 3.18 58 phosphate OP2@A.A958 A.A958 2.88 59 phosphate OP1@A.A1003 A.A1003 2.78 60 sugar O4'@A.U1050 A.A1056 3.07 61 sugar O4'@A.C1051 A.U1058 3.40 62 sugar O4'@A.A1066 A.A1067 2.92 63 sugar O4'@A.C1181 A.G1071 3.10 64 sugar O2'@A.A1084 A.G1085 3.40 65 sugar O4'@A.U1091 A.G1093 2.75 66 phosphate OP2@A.C1155 A.C1155 2.98 67 sugar O2'@A.A1174 A.A1175 2.74 68 phosphate OP1@A.U2055 A.U1176 3.33 69 sugar O4'@A.U1217 A.C1216 3.23 70 sugar O2'@A.U1217 A.G1220 2.72 71 sugar O4'@A.A1019 A.U1229 2.96 72 sugar O4'@A.U590 A.A1260 2.79 73 sugar O4'@A.G596 A.A1260 3.48 74 phosphate OP2@A.A1265 A.G1263 2.87 75 sugar O2'@A.G1292 A.A1293 2.85 76 phosphate OP2@A.G1324 A.G1322 2.94 77 sugar O4'@A.A1679 A.A1339 2.98 78 sugar O4'@A.U1351 A.U1352 3.39 79 sugar O4'@A.G1400 A.G1399 3.41 80 phosphate OP2@A.A1405 A.G1403 3.24 81 sugar O4'@A.U1383 A.A1423 3.38 82 phosphate OP1@A.A1432 A.U1430 3.24 83 sugar O4'@A.A1473 A.C1474 2.85 84 sugar O4'@A.G1486 A.A1485 3.45 85 phosphate OP2@A.A1499 A.A1499 2.94 86 sugar O4'@A.A1504 A.U1505 2.83 87 sugar O4'@A.A1569 A.G1571 2.95 88 phosphate O5'@A.A1580 A.A1581 3.09 89 sugar O2'@A.G1586 A.A1585 3.01 90 phosphate OP2@A.A1585 A.G1586 2.69 91 sugar O4'@A.G1589 A.A1588 3.17 92 sugar O2'@A.G1651 A.A1653 2.62 93 phosphate OP2@A.G1678 A.G1676 2.89 94 other NZ@J.LYS5 A.G1698 2.94 95 phosphate OP2@A.G1718 A.U1716 2.92 96 sugar O4'@A.C1739 A.G1740 2.94 97 sugar O4'@A.A1746 A.A1745 3.34 98 sugar O4'@A.U1759 A.G1757 3.27 99 phosphate OP2@A.A1784 A.G1782 3.12 100 sugar O2'@A.U2724 A.G1787 3.35 101 sugar O4'@A.C1803 A.A1802 3.45 102 sugar O4'@A.G1805 A.U1804 3.48 103 sugar O4'@A.A1848 A.A1850 3.03 104 phosphate OP1@A.C1866 A.G1868 2.91 105 sugar O2'@A.G1874 A.G1875 3.25 106 sugar O4'@A.G1884 A.A1883 3.10 107 sugar O4'@A.A1913 A.A1888 2.68 108 sugar O4'@A.C1922 A.C1923 2.76 109 sugar O4'@A.U1927 A.G1926 3.43 110 phosphate O5'@A.C1867 A.A1928 3.40 111 sugar O4'@A.A623 A.U2046 3.22 112 other P@A.A619 A.A2060 3.31 113 phosphate OP2@A.A619 A.A2060 2.81 114 sugar O2'@A.G2096 A.G2098 2.88 115 phosphate O3'@A.U2140 A.A2141 3.18 116 other P@A.A2146 A.G2144 3.43 117 phosphate OP1@A.A2146 A.G2144 2.81 118 phosphate OP2@A.A2146 A.G2144 2.92 119 sugar O2'@A.A2146 A.U2147 3.01 120 sugar O4'@A.U2140 A.A2148 3.05 121 phosphate OP1@A.U2151 A.U2151 2.87 122 phosphate OP1@A.A2152 A.A2152 3.49 123 phosphate OP1@A.G2194 A.G2153 2.85 124 phosphate OP1@A.U2201 A.G2153 2.84 125 sugar O2'@A.C2193 A.G2154 2.61 126 phosphate O5'@A.G2154 A.A2155 3.03 127 sugar O2'@A.U2159 A.U2160 2.83 128 sugar O4'@A.G2182 A.G2161 3.00 129 sugar O4'@A.C2166 A.A2165 3.16 130 sugar O4'@A.C2172 A.G2171 3.22 131 sugar O4'@A.C2175 A.G2173 3.48 132 sugar O2'@A.G2173 A.A2176 2.82 133 sugar O4'@A.G2177 A.A2176 3.30 134 sugar O4'@A.G2161 A.G2183 3.33 135 phosphate OP1@A.G2183 A.G2183 3.06 136 sugar O4'@A.G2186 A.G2185 3.38 137 sugar O2'@A.C2158 A.A2187 3.18 138 phosphate OP2@A.A2187 A.A2187 2.82 139 phosphate OP2@A.G2194 A.G2194 2.79 140 sugar O2'@A.G2194 A.G2195 3.39 141 sugar O2'@A.A2200 A.U2201 3.48 142 phosphate OP1@A.A2155 A.A2202 2.70 143 sugar O4'@A.G1830 A.G2232 2.98 144 sugar O4'@A.G2253 A.A2252 3.35 145 other P@A.A2254 A.C2255 3.50 146 phosphate OP1@A.A2254 A.C2255 2.79 147 sugar O2'@A.G2266 A.G2268 2.88 148 phosphate OP1@A.G2311 A.C2289 2.85 149 sugar O2'@A.A2295 A.U2294 2.89 150 sugar O2'@A.A2298 A.G2299 2.79 151 sugar O4'@A.C2310 A.G2309 2.87 152 sugar O4'@A.A2316 A.G2318 3.25 153 sugar O4'@A.A2329 A.G2328 3.31 154 sugar O4'@A.U2331 A.A2330 3.01 155 sugar O2'@A.U2345 A.C2346 2.83 156 sugar O2'@A.A2327 A.G2350 2.63 157 phosphate O3'@A.A2349 A.A2351 3.30 158 phosphate OP1@A.G2354 A.G2354 2.86 159 phosphate OP2@A.G2354 A.G2354 2.75 160 sugar O4'@A.A2358 A.G2359 2.89 161 phosphate OP1@A.C2363 A.C2363 2.85 162 other P@A.A2365 A.A2365 3.46 163 phosphate OP1@A.A2365 A.A2365 3.09 164 phosphate O5'@A.G2318 A.U2372 2.78 165 sugar O4'@A.U2373 A.A2375 3.08 166 sugar O2'@A.G2411 A.A2375 3.33 167 sugar O4'@A.U2386 A.C2385 3.07 168 phosphate OP2@A.G2394 A.G2394 3.42 169 sugar O2'@A.G2401 A.A2402 2.94 170 sugar O2'@A.A2405 A.A2406 2.94 171 phosphate OP2@A.A2417 A.A2417 3.15 172 phosphate O3'@A.G2425 A.G2426 3.46 173 sugar O2'@A.U2427 A.G2428 2.54 174 sugar O2'@A.G2428 A.G2429 2.58 175 phosphate OP1@A.C2445 A.C2445 2.79 176 sugar O2'@A.C2445 A.C2446 2.72 177 sugar O2'@A.C2446 A.A2447 2.68 178 sugar O2'@A.C2449 A.G2450 2.78 179 phosphate O3'@A.A2454 A.U2452 2.94 180 phosphate O3'@A.C872 A.G2457 3.02 181 sugar O2'@A.C2453 A.G2458 3.31 182 sugar O2'@A.C201 A.A2459 2.79 183 phosphate OP2@A.A2462 A.A2462 2.82 184 phosphate OP2@A.A2463 A.A2463 3.12 185 sugar O4'@A.G2688 A.A2560 2.73 186 phosphate OP2@A.U2583 A.U2581 3.12 187 sugar O4'@A.U2583 A.G2582 3.24 188 sugar O2'@A.U2676 A.A2593 2.96 189 sugar O2'@A.G2572 A.G2674 3.38 190 other P@A.G2690 A.G2688 3.45 191 phosphate OP2@A.G2690 A.G2688 2.72 192 sugar O4'@A.U2808 A.A2810 3.14 193 other NZ@D.LYS197 A.A2845 3.15 194 sugar O4'@A.A2851 A.G2850 3.25 195 sugar O4'@A.U2857 A.G2859 3.19 196 phosphate OP2@A.G2884 A.G2882 2.83 197 phosphate OP2@A.A2885 A.C2886 3.45 198 sugar O4'@A.C2720 A.G2897 3.41 199 sugar O4'@A.C2925 A.A2924 3.49 200 phosphate OP1@B.A11 B.A13 3.31 201 phosphate OP2@B.A11 B.A13 3.33 202 sugar O4'@B.U32 B.G31 3.15 203 sugar O4'@B.C34 B.U33 3.42 204 sugar O2'@B.U32 B.C34 2.89 205 sugar O4'@B.C45 B.A46 2.92 206 sugar O4'@B.U95 B.G94 3.45 207 sugar O4'@B.A13 B.G107 2.66 208 sugar O4'@B.A114 B.A113 3.23 **************************************************************************** Note: For the various types of loops listed below, numbers within the first set of brackets are the number of loop nts. Numbers in the second set of brackets are the identities of the stems (positive) or isolated WC/wobble pairs (negative) to which they are linked. **************************************************************************** List of 62 hairpin loops 1 hairpin loop: nts=10; [8]; linked by [#9] summary: [1] 8 [A.59 A.68] 3 nts=10 GGACGAACAC A.G59,A.G60,A.A61,A.C62,A.G63,A.A64,A.A65,A.C66,A.A67,A.C68 nts=8 GACGAACA A.G60,A.A61,A.C62,A.G63,A.A64,A.A65,A.C66,A.A67 2 hairpin loop: nts=8; [6]; linked by [#-3] summary: [1] 6 [A.67 A.74] 1 nts=8 ACCGAUAU A.A67,A.C68,A.C69,A.G70,A.A71,A.U72,A.A73,A.U74 nts=6 CCGAUA A.C68,A.C69,A.G70,A.A71,A.U72,A.A73 3 hairpin loop: nts=9; [7]; linked by [#12] summary: [1] 7 [A.87 A.95] 3 nts=9 UGUAAGCAA A.U87,A.G88,A.U89,A.A90,A.A91,A.G92,A.C93,A.A94,A.A95 nts=7 GUAAGCA A.G88,A.U89,A.A90,A.A91,A.G92,A.C93,A.A94 4 hairpin loop: nts=6; [4]; linked by [#13] summary: [1] 4 [A.122 A.127] 3 nts=6 GGAAAC A.G122,A.G123,A.A124,A.A125,A.A126,A.C127 nts=4 GAAA A.G123,A.A124,A.A125,A.A126 5 hairpin loop: nts=8; [6]; linked by [#14] summary: [1] 6 [A.136 A.143] 7 nts=8 CGUAAUGG A.C136,A.G137,A.U138,A.A139,A.A140,A.U141,A.G142,A.G143 nts=6 GUAAUG A.G137,A.U138,A.A139,A.A140,A.U141,A.G142 6 hairpin loop: nts=13; [11]; linked by [#15] summary: [1] 11 [A.158 A.170] 6 nts=13 CUGAAUUCAUAGG A.C158,A.U159,A.G160,A.A161,A.A162,A.U163,A.U164,A.C165,A.A166,A.U167,A.A168,A.G169,A.G170 nts=11 UGAAUUCAUAG A.U159,A.G160,A.A161,A.A162,A.U163,A.U164,A.C165,A.A166,A.U167,A.A168,A.G169 7 hairpin loop: nts=8; [6]; linked by [#-6] summary: [1] 6 [A.197 A.204] 1 nts=8 GAAACAUC A.G197,A.A198,A.A199,A.A200,A.C201,A.A202,A.U203,A.C204 nts=6 AAACAU A.A198,A.A199,A.A200,A.C201,A.A202,A.U203 8 hairpin loop: nts=6; [4]; linked by [#17] summary: [1] 4 [A.228 A.233] 2 nts=6 CAAAUG A.C228,A.A229,A.A230,A.A231,A.U232,A.G233 nts=4 AAAU A.A229,A.A230,A.A231,A.U232 9 hairpin loop: nts=7; [5]; linked by [#19] summary: [1] 5 [A.249 A.255] 2 nts=7 CGGCGAG A.C249,A.G250,A.G251,A.C252,A.G253,A.A254,A.G255 nts=5 GGCGA A.G250,A.G251,A.C252,A.G253,A.A254 10 hairpin loop: nts=6; [4]; linked by [#22] summary: [1] 4 [A.283 A.288] 3 nts=6 GCUUGC A.G283,A.C284,A.U285,A.U286,A.G287,A.C288 nts=4 CUUG A.C284,A.U285,A.U286,A.G287 11 hairpin loop: nts=8; [6]; linked by [#29] summary: [1] 6 [A.349 A.356] 4 nts=8 CUGGAAAG A.C349,A.U350,A.G351,A.G352,A.A353,A.A354,A.A355,A.G356 nts=6 UGGAAA A.U350,A.G351,A.G352,A.A353,A.A354,A.A355 12 hairpin loop: nts=5; [3]; linked by [#-10] summary: [1] 3 [A.363 A.367] 1 nts=5 CAUAG A.C363,A.A364,A.U365,A.A366,A.G367 nts=3 AUA A.A364,A.U365,A.A366 13 hairpin loop: nts=9; [7]; linked by [#31] summary: [1] 7 [A.371 A.379] 3 nts=9 GUAACAGCC A.G371,A.U372,A.A373,A.A374,A.C375,A.A376,A.G377,A.C378,A.C379 nts=7 UAACAGC A.U372,A.A373,A.A374,A.C375,A.A376,A.G377,A.C378 14 hairpin loop: nts=11; [9]; linked by [#32] summary: [1] 9 [A.429 A.439] 8 nts=11 ACACGUGAAAU A.A429,A.C430,A.A431,A.C432,A.G433,A.U434,A.G435,A.A436,A.A437,A.A438,A.U439 nts=9 CACGUGAAA A.C430,A.A431,A.C432,A.G433,A.U434,A.G435,A.A436,A.A437,A.A438 15 hairpin loop: nts=8; [6]; linked by [#33] summary: [1] 6 [A.457 A.464] 5 nts=8 GGACCAUC A.G457,A.G458,A.A459,A.C460,A.C461,A.A462,A.U463,A.C464 nts=6 GACCAU A.G458,A.A459,A.C460,A.C461,A.A462,A.U463 16 hairpin loop: nts=6; [4]; linked by [#34] summary: [1] 4 [A.509 A.514] 2 nts=6 CGUGAG A.C509,A.G510,A.U511,A.G512,A.A513,A.G514 nts=4 GUGA A.G510,A.U511,A.G512,A.A513 17 hairpin loop: nts=6; [4]; linked by [#35] summary: [1] 4 [A.534 A.539] 4 nts=6 CGGAAG A.C534,A.G535,A.G536,A.A537,A.A538,A.G539 nts=4 GGAA A.G535,A.G536,A.A537,A.A538 18 hairpin loop: nts=8; [6]; linked by [#37] summary: [1] 6 [A.588 A.595] 4 nts=8 CGUUAACG A.C588,A.G589,A.U590,A.U591,A.A592,A.A593,A.C594,A.G595 nts=6 GUUAAC A.G589,A.U590,A.U591,A.A592,A.A593,A.C594 19 hairpin loop: nts=10; [8]; linked by [#-17] summary: [1] 8 [A.610 A.619] 1 nts=10 UUUUGUAGAA A.U610,A.U611,A.U612,A.U613,A.G614,A.U615,A.A616,A.G617,A.A618,A.A619 nts=8 UUUGUAGA A.U611,A.U612,A.U613,A.G614,A.U615,A.A616,A.G617,A.A618 20 hairpin loop: nts=7; [5]; linked by [#42] summary: [1] 5 [A.656 A.662] 3 nts=7 AGAAGAU A.A656,A.G657,A.A658,A.A659,A.G660,A.A661,A.U662 nts=5 GAAGA A.G657,A.A658,A.A659,A.G660,A.A661 21 hairpin loop: nts=6; [4]; linked by [#43] summary: [1] 4 [A.675 A.680] 2 nts=6 CGAAAG A.C675,A.G676,A.A677,A.A678,A.A679,A.G680 nts=4 GAAA A.G676,A.A677,A.A678,A.A679 22 hairpin loop: nts=7; [5]; linked by [#44] summary: [1] 5 [A.687 A.693] 4 nts=7 UGAAUAG A.U687,A.G688,A.A689,A.A690,A.U691,A.A692,A.G693 nts=5 GAAUA A.G688,A.A689,A.A690,A.U691,A.A692 23 hairpin loop: nts=8; [6]; linked by [#49] summary: [1] 6 [A.759 A.766] 6 nts=8 GGUAACAC A.G759,A.G760,A.U761,A.A762,A.A763,A.C764,A.A765,A.C766 nts=6 GUAACA A.G760,A.U761,A.A762,A.A763,A.C764,A.A765 24 hairpin loop: nts=10; [8]; linked by [#51] summary: [1] 8 [A.791 A.800] 5 nts=10 CGUUGAAAAG A.C791,A.G792,A.U793,A.U794,A.G795,A.A796,A.A797,A.A798,A.A799,A.G800 nts=8 GUUGAAAA A.G792,A.U793,A.U794,A.G795,A.A796,A.A797,A.A798,A.A799 25 hairpin loop: nts=7; [5]; linked by [#52] summary: [1] 5 [A.826 A.832] 3 nts=7 UGAAAUG A.U826,A.G827,A.A828,A.A829,A.A830,A.U831,A.G832 nts=5 GAAAU A.G827,A.A828,A.A829,A.A830,A.U831 26 hairpin loop: nts=8; [6]; linked by [#54] summary: [1] 6 [A.872 A.879] 4 nts=8 CUUUAGGG A.C872,A.U873,A.U874,A.U875,A.A876,A.G877,A.G878,A.G879 nts=6 UUUAGG A.U873,A.U874,A.U875,A.A876,A.G877,A.G878 27 hairpin loop: nts=8; [6]; linked by [#61] summary: [1] 6 [A.1001 A.1008] 2 nts=8 UGAUAAGA A.U1001,A.G1002,A.A1003,A.U1004,A.A1005,A.A1006,A.G1007,A.A1008 nts=6 GAUAAG A.G1002,A.A1003,A.U1004,A.A1005,A.A1006,A.G1007 28 hairpin loop: nts=8; [6]; linked by [#62] summary: [1] 6 [A.1024 A.1031] 3 nts=8 GAAACAGC A.G1024,A.A1025,A.A1026,A.A1027,A.C1028,A.A1029,A.G1030,A.C1031 nts=6 AAACAG A.A1025,A.A1026,A.A1027,A.C1028,A.A1029,A.G1030 29 hairpin loop: nts=5; [3]; linked by [#71] summary: [1] 3 [A.1216 A.1220] 7 nts=5 CUUCG A.C1216,A.U1217,A.U1218,A.C1219,A.G1220 nts=3 UUC A.U1217,A.U1218,A.C1219 30 hairpin loop: nts=6; [4]; linked by [#75] summary: [1] 4 [A.1262 A.1267] 2 nts=6 CGGAAG A.C1262,A.G1263,A.G1264,A.A1265,A.A1266,A.G1267 nts=4 GGAA A.G1263,A.G1264,A.A1265,A.A1266 31 hairpin loop: nts=9; [7]; linked by [#77] summary: [1] 7 [A.1320 A.1328] 6 nts=9 GUGAGAAUC A.G1320,A.U1321,A.G1322,A.A1323,A.G1324,A.A1325,A.A1326,A.U1327,A.C1328 nts=7 UGAGAAU A.U1321,A.G1322,A.A1323,A.G1324,A.A1325,A.A1326,A.U1327 32 hairpin loop: nts=7; [5]; linked by [#82] summary: [1] 5 [A.1363 A.1369] 2 nts=7 GCUCGUC A.G1363,A.C1364,A.U1365,A.C1366,A.G1367,A.U1368,A.C1369 nts=5 CUCGU A.C1364,A.U1365,A.C1366,A.G1367,A.U1368 33 hairpin loop: nts=6; [4]; linked by [#87] summary: [1] 4 [A.1402 A.1407] 3 nts=6 CGAAAG A.C1402,A.G1403,A.A1404,A.A1405,A.A1406,A.G1407 nts=4 GAAA A.G1403,A.A1404,A.A1405,A.A1406 34 hairpin loop: nts=10; [8]; linked by [#88] summary: [1] 8 [A.1428 A.1437] 5 nts=10 GUUGAUAUUC A.G1428,A.U1429,A.U1430,A.G1431,A.A1432,A.U1433,A.A1434,A.U1435,A.U1436,A.C1437 nts=8 UUGAUAUU A.U1429,A.U1430,A.G1431,A.A1432,A.U1433,A.A1434,A.U1435,A.U1436 35 hairpin loop: nts=12; [10]; linked by [#-34] summary: [1] 10 [A.1496 A.1507] 1 nts=12 GGUAUUGGAUAU A.G1496,A.G1497,A.U1498,A.A1499,A.U1500,A.U1501,A.G1502,A.G1503,A.A1504,A.U1505,A.A1506,A.U1507 nts=10 GUAUUGGAUA A.G1497,A.U1498,A.A1499,A.U1500,A.U1501,A.G1502,A.G1503,A.A1504,A.U1505,A.A1506 36 hairpin loop: nts=7; [5]; linked by [#100] summary: [1] 5 [A.1538 A.1544] 2 nts=7 GCAAAUC A.G1538,A.C1539,A.A1540,A.A1541,A.A1542,A.U1543,A.C1544 nts=5 CAAAU A.C1539,A.A1540,A.A1541,A.A1542,A.U1543 37 hairpin loop: nts=13; [11]; linked by [#101] summary: [1] 11 [A.1577 A.1589] 2 nts=13 CGAAAUAUAGUAG A.C1577,A.G1578,A.A1579,A.A1580,A.A1581,A.U1582,A.A1583,A.U1584,A.A1585,A.G1586,A.U1587,A.A1588,A.G1589 nts=11 GAAAUAUAGUA A.G1578,A.A1579,A.A1580,A.A1581,A.U1582,A.A1583,A.U1584,A.A1585,A.G1586,A.U1587,A.A1588 38 hairpin loop: nts=4; [2]; linked by [#-38] summary: [1] 2 [A.1613 A.1616] 1 nts=4 CAAG A.C1613,A.A1614,A.A1615,A.G1616 nts=2 AA A.A1614,A.A1615 39 hairpin loop: nts=8; [6]; linked by [#102] summary: [1] 6 [A.1657 A.1664] 2 nts=8 CGACACAG A.C1657,A.G1658,A.A1659,A.C1660,A.A1661,A.C1662,A.A1663,A.G1664 nts=6 GACACA A.G1658,A.A1659,A.C1660,A.A1661,A.C1662,A.A1663 40 hairpin loop: nts=7; [5]; linked by [#103] summary: [1] 5 [A.1675 A.1681] 4 nts=7 AGAGAAU A.A1675,A.G1676,A.A1677,A.G1678,A.A1679,A.A1680,A.U1681 nts=5 GAGAA A.G1676,A.A1677,A.G1678,A.A1679,A.A1680 41 hairpin loop: nts=6; [4]; linked by [#-41] summary: [1] 4 [A.1736 A.1741] 1 nts=6 CUUCGG A.C1736,A.U1737,A.U1738,A.C1739,A.G1740,A.G1741 nts=4 UUCG A.U1737,A.U1738,A.C1739,A.G1740 42 hairpin loop: nts=6; [4]; linked by [#109] summary: [1] 4 [A.1764 A.1769] 4 nts=6 UGCAAG A.U1764,A.G1765,A.C1766,A.A1767,A.A1768,A.G1769 nts=4 GCAA A.G1765,A.C1766,A.A1767,A.A1768 43 hairpin loop: nts=5; [3]; linked by [#-43] summary: [1] 3 [A.1781 A.1785] 1 nts=5 CGCAG A.C1781,A.G1782,A.C1783,A.A1784,A.G1785 nts=3 GCA A.G1782,A.C1783,A.A1784 44 hairpin loop: nts=11; [9]; linked by [#112] summary: [1] 9 [A.1806 A.1816] 2 nts=11 UUUAGCAAAAA A.U1806,A.U1807,A.U1808,A.A1809,A.G1810,A.C1811,A.A1812,A.A1813,A.A1814,A.A1815,A.A1816 nts=9 UUAGCAAAA A.U1807,A.U1808,A.A1809,A.G1810,A.C1811,A.A1812,A.A1813,A.A1814,A.A1815 45 hairpin loop: nts=6; [4]; linked by [#114] summary: [1] 4 [A.1835 A.1840] 3 nts=6 CGUAAG A.C1835,A.G1836,A.U1837,A.A1838,A.A1839,A.G1840 nts=4 GUAA A.G1836,A.U1837,A.A1838,A.A1839 46 hairpin loop: nts=15; [13]; linked by [#-45] summary: [1] 13 [A.2049 A.2063] 1 nts=15 AGUACCUGUGAAGAU A.A2049,A.G2050,A.U2051,A.A2052,A.C2053,A.C2054,A.U2055,A.G2056,A.U2057,A.G2058,A.A2059,A.A2060,A.G2061,A.A2062,A.U2063 nts=13 GUACCUGUGAAGA A.G2050,A.U2051,A.A2052,A.C2053,A.C2054,A.U2055,A.G2056,A.U2057,A.G2058,A.A2059,A.A2060,A.G2061,A.A2062 47 hairpin loop: nts=10; [8]; linked by [#118] summary: [1] 8 [A.2056 A.2065] 5 nts=10 GUGAAGAUGC A.G2056,A.U2057,A.G2058,A.A2059,A.A2060,A.G2061,A.A2062,A.U2063,A.G2064,A.C2065 nts=8 UGAAGAUG A.U2057,A.G2058,A.A2059,A.A2060,A.G2061,A.A2062,A.U2063,A.G2064 48 hairpin loop: nts=6; [4]; linked by [#131] summary: [1] 4 [A.2172 A.2177] 2 nts=6 CGCCAG A.C2172,A.G2173,A.C2174,A.C2175,A.A2176,A.G2177 nts=4 GCCA A.G2173,A.C2174,A.C2175,A.A2176 49 hairpin loop: nts=7; [5]; linked by [#133] summary: [1] 5 [A.2238 A.2244] 6 nts=7 CUUAUCG A.C2238,A.U2239,A.U2240,A.A2241,A.U2242,A.C2243,A.G2244 nts=5 UUAUC A.U2239,A.U2240,A.A2241,A.U2242,A.C2243 50 hairpin loop: nts=19; [17]; linked by [#134] summary: [1] 17 [A.2290 A.2308] 2 nts=19 CUCCUAAAAGGUAACGGAG A.C2290,A.U2291,A.C2292,A.C2293,A.U2294,A.A2295,A.A2296,A.A2297,A.A2298,A.G2299,A.G2300,A.U2301,A.A2302,A.A2303,A.C2304,A.G2305,A.G2306,A.A2307,A.G2308 nts=17 UCCUAAAAGGUAACGGA A.U2291,A.C2292,A.C2293,A.U2294,A.A2295,A.A2296,A.A2297,A.A2298,A.G2299,A.G2300,A.U2301,A.A2302,A.A2303,A.C2304,A.G2305,A.G2306,A.A2307 51 hairpin loop: nts=8; [6]; linked by [#136] summary: [1] 6 [A.2384 A.2391] 2 nts=8 CCUACAAG A.C2384,A.C2385,A.U2386,A.A2387,A.C2388,A.A2389,A.A2390,A.G2391 nts=6 CUACAA A.C2385,A.U2386,A.A2387,A.C2388,A.A2389,A.A2390 52 hairpin loop: nts=10; [8]; linked by [#137] summary: [1] 8 [A.2433 A.2442] 2 nts=10 CGCAUGGAAG A.C2433,A.G2434,A.C2435,A.A2436,A.U2437,A.G2438,A.G2439,A.A2440,A.A2441,A.G2442 nts=8 GCAUGGAA A.G2434,A.C2435,A.A2436,A.U2437,A.G2438,A.G2439,A.A2440,A.A2441 53 hairpin loop: nts=10; [8]; linked by [#140] summary: [1] 8 [A.2556 A.2565] 5 nts=10 CUGUAGUCGG A.C2556,A.U2557,A.G2558,A.U2559,A.A2560,A.G2561,A.U2562,A.C2563,A.G2564,A.G2565 nts=8 UGUAGUCG A.U2557,A.G2558,A.U2559,A.A2560,A.G2561,A.U2562,A.C2563,A.G2564 54 hairpin loop: nts=7; [5]; linked by [#141] summary: [1] 5 [A.2580 A.2586] 5 nts=7 CUGUUCG A.C2580,A.U2581,A.G2582,A.U2583,A.U2584,A.C2585,A.G2586 nts=5 UGUUC A.U2581,A.G2582,A.U2583,A.U2584,A.C2585 55 hairpin loop: nts=6; [4]; linked by [#143] summary: [1] 4 [A.2623 A.2628] 3 nts=6 CGUGAG A.C2623,A.G2624,A.U2625,A.G2626,A.A2627,A.G2628 nts=4 GUGA A.G2624,A.U2625,A.G2626,A.A2627 56 hairpin loop: nts=6; [4]; linked by [#-57] summary: [1] 4 [A.2687 A.2692] 1 nts=6 CGAGAG A.C2687,A.G2688,A.A2689,A.G2690,A.A2691,A.G2692 nts=4 GAGA A.G2688,A.A2689,A.G2690,A.A2691 57 hairpin loop: nts=6; [4]; linked by [#150] summary: [1] 4 [A.2730 A.2735] 6 nts=6 UGCCAA A.U2730,A.G2731,A.C2732,A.C2733,A.A2734,A.A2735 nts=4 GCCA A.G2731,A.C2732,A.C2733,A.A2734 58 hairpin loop: nts=15; [13]; linked by [#152] summary: [1] 13 [A.2774 A.2788] 4 nts=15 CUGAAAGCAUCUAAG A.C2774,A.U2775,A.G2776,A.A2777,A.A2778,A.A2779,A.G2780,A.C2781,A.A2782,A.U2783,A.C2784,A.U2785,A.A2786,A.A2787,A.G2788 nts=13 UGAAAGCAUCUAA A.U2775,A.G2776,A.A2777,A.A2778,A.A2779,A.G2780,A.C2781,A.A2782,A.U2783,A.C2784,A.U2785,A.A2786,A.A2787 59 hairpin loop: nts=6; [4]; linked by [#153] summary: [1] 4 [A.2823 A.2828] 4 nts=6 CGCAAG A.C2823,A.G2824,A.C2825,A.A2826,A.A2827,A.G2828 nts=4 GCAA A.G2824,A.C2825,A.A2826,A.A2827 60 hairpin loop: nts=9; [7]; linked by [#155] summary: [1] 7 [A.2844 A.2852] 5 nts=9 AAAGAUGAU A.A2844,A.A2845,A.A2846,A.G2847,A.A2848,A.U2849,A.G2850,A.A2851,A.U2852 nts=7 AAGAUGA A.A2845,A.A2846,A.G2847,A.A2848,A.U2849,A.G2850,A.A2851 61 hairpin loop: nts=6; [4]; linked by [#159] summary: [1] 4 [A.2881 A.2886] 5 nts=6 GGCGAC A.G2881,A.G2882,A.C2883,A.G2884,A.A2885,A.C2886 nts=4 GCGA A.G2882,A.C2883,A.G2884,A.A2885 62 hairpin loop: nts=7; [5]; linked by [#-60] summary: [1] 5 [B.36 B.42] 1 nts=7 CAUACCG B.C36,B.A37,B.U38,B.A39,B.C40,B.C41,B.G42 nts=5 AUACC B.A37,B.U38,B.A39,B.C40,B.C41 **************************************************************************** List of 28 bulges 1 bulge: nts=5; [0,1]; linked by [#4,#5] summary: [2] 0 1 [A.36 A.491 A.37 A.489] 2 7 nts=5 GCGAC A.G36,A.C37,A.G489,A.A490,A.C491 nts=0 nts=1 A A.A490 2 bulge: nts=5; [0,1]; linked by [#5,#6] summary: [2] 0 1 [A.43 A.483 A.44 A.481] 7 2 nts=5 GAUCC A.G43,A.A44,A.U481,A.C482,A.C483 nts=0 nts=1 C A.C482 3 bulge: nts=5; [0,1]; linked by [#-4,#15] summary: [2] 0 1 [A.152 A.177 A.153 A.175] 1 6 nts=5 CCGAG A.C152,A.C153,A.G175,A.A176,A.G177 nts=0 nts=1 A A.A176 4 bulge: nts=5; [0,1]; linked by [#-5,#16] summary: [2] 0 1 [A.186 A.217 A.187 A.215] 1 5 nts=5 CCGAG A.C186,A.C187,A.G215,A.A216,A.G217 nts=0 nts=1 A A.A216 5 bulge: nts=5; [1,0]; linked by [#-9,#29] summary: [2] 1 0 [A.344 A.360 A.346 A.359] 1 4 nts=5 GAGCC A.G344,A.A345,A.G346,A.C359,A.C360 nts=1 A A.A345 nts=0 6 bulge: nts=5; [0,1]; linked by [#47,#-19] summary: [2] 0 1 [A.744 A.812 A.745 A.810] 9 1 nts=5 CCGAG A.C744,A.C745,A.G810,A.A811,A.G812 nts=0 nts=1 A A.A811 7 bulge: nts=5; [0,1]; linked by [#48,#-20] summary: [2] 0 1 [A.749 A.777 A.750 A.775] 3 1 nts=5 GUGGC A.G749,A.U750,A.G775,A.G776,A.C777 nts=0 nts=1 G A.G776 8 bulge: nts=5; [1,0]; linked by [#50,#51] summary: [2] 1 0 [A.785 A.805 A.787 A.804] 3 5 nts=5 CACGG A.C785,A.A786,A.C787,A.G804,A.G805 nts=1 A A.A786 nts=0 9 bulge: nts=5; [0,1]; linked by [#55,#56] summary: [2] 0 1 [A.884 A.988 A.885 A.986] 2 7 nts=5 CCGAG A.C884,A.C885,A.G986,A.A987,A.G988 nts=0 nts=1 A A.A987 10 bulge: nts=5; [1,0]; linked by [#63,#64] summary: [2] 1 0 [A.1040 A.1206 A.1042 A.1205] 4 3 nts=5 CCAUG A.C1040,A.C1041,A.A1042,A.U1205,A.G1206 nts=1 C A.C1041 nts=0 11 bulge: nts=5; [1,0]; linked by [#-26,#67] summary: [2] 1 0 [A.1057 A.1196 A.1059 A.1195] 1 6 nts=5 GUAUC A.G1057,A.U1058,A.A1059,A.U1195,A.C1196 nts=1 U A.U1058 nts=0 12 bulge: nts=5; [1,0]; linked by [#89,#90] summary: [2] 1 0 [A.1448 A.1638 A.1450 A.1637] 5 6 nts=5 UCCGA A.U1448,A.C1449,A.C1450,A.G1637,A.A1638 nts=1 C A.C1449 nts=0 13 bulge: nts=5; [0,1]; linked by [#110,#111] summary: [2] 0 1 [A.1799 A.2011 A.1800 A.2009] 7 2 nts=5 GCGAU A.G1799,A.C1800,A.G2009,A.A2010,A.U2011 nts=0 nts=1 A A.A2010 14 bulge: nts=5; [1,0]; linked by [#115,#-44] summary: [2] 1 0 [A.1873 A.1925 A.1875 A.1924] 2 1 nts=5 UGGCA A.U1873,A.G1874,A.G1875,A.C1924,A.A1925 nts=1 G A.G1874 nts=0 15 bulge: nts=5; [1,0]; linked by [#119,#120] summary: [2] 1 0 [A.2079 A.2647 A.2081 A.2646] 8 3 nts=5 CAGCG A.C2079,A.A2080,A.G2081,A.C2646,A.G2647 nts=1 A A.A2080 nts=0 16 bulge: nts=5; [1,0]; linked by [#132,#133] summary: [2] 1 0 [A.2231 A.2250 A.2233 A.2249] 2 6 nts=5 CGCGG A.C2231,A.G2232,A.C2233,A.G2249,A.G2250 nts=1 G A.G2232 nts=0 17 bulge: nts=5; [1,0]; linked by [#-51,#-52] summary: [2] 1 0 [A.2329 A.2344 A.2331 A.2343] 1 1 nts=5 AAUAU A.A2329,A.A2330,A.U2331,A.A2343,A.U2344 nts=1 A A.A2330 nts=0 18 bulge: nts=5; [0,1]; linked by [#142,#143] summary: [2] 0 1 [A.2620 A.2632 A.2621 A.2630] 4 3 nts=5 CGCAG A.C2620,A.G2621,A.C2630,A.A2631,A.G2632 nts=0 nts=1 A A.A2631 19 bulge: nts=5; [0,1]; linked by [#156,#157] summary: [2] 0 1 [A.2863 A.2905 A.2864 A.2903] 3 5 nts=5 GGUAC A.G2863,A.G2864,A.U2903,A.A2904,A.C2905 nts=0 nts=1 A A.A2904 20 bulge: nts=5; [0,1]; linked by [#161,#162] summary: [2] 0 1 [B.15 B.65 B.16 B.63] 2 6 nts=5 CGCAG B.C15,B.G16,B.C63,B.A64,B.G65 nts=0 nts=1 A B.A64 21 bulge: nts=6; [0,2]; linked by [#23,#24] summary: [2] 0 2 [A.305 A.413 A.306 A.410] 4 5 nts=6 ACGGAU A.A305,A.C306,A.G410,A.G411,A.A412,A.U413 nts=0 nts=2 GA A.G411,A.A412 22 bulge: nts=6; [2,0]; linked by [#80,#-32] summary: [2] 2 0 [A.1349 A.1649 A.1352 A.1648] 2 1 nts=6 GUUUAC A.G1349,A.U1350,A.U1351,A.U1352,A.A1648,A.C1649 nts=2 UU A.U1350,A.U1351 nts=0 23 bulge: nts=6; [2,0]; linked by [#106,#-39] summary: [2] 2 0 [A.1711 A.2023 A.1714 A.2022] 2 1 nts=6 GGAAUC A.G1711,A.G1712,A.A1713,A.A1714,A.U2022,A.C2023 nts=2 GA A.G1712,A.A1713 nts=0 24 bulge: nts=6; [0,2]; linked by [#122,#123] summary: [2] 0 2 [A.2099 A.2470 A.2100 A.2467] 2 4 nts=6 GAUACC A.G2099,A.A2100,A.U2467,A.A2468,A.C2469,A.C2470 nts=0 nts=2 AC A.A2468,A.C2469 25 bulge: nts=6; [0,2]; linked by [#139,#140] summary: [2] 0 2 [A.2551 A.2572 A.2552 A.2569] 3 5 nts=6 UGCAAG A.U2551,A.G2552,A.C2569,A.A2570,A.A2571,A.G2572 nts=0 nts=2 AA A.A2570,A.A2571 26 bulge: nts=6; [0,2]; linked by [#149,#150] summary: [2] 0 2 [A.2724 A.2743 A.2725 A.2740] 5 6 nts=6 UUAUCG A.U2724,A.U2725,A.A2740,A.U2741,A.C2742,A.G2743 nts=0 nts=2 UC A.U2741,A.C2742 27 bulge: nts=11; [7,0]; linked by [#25,#26] summary: [2] 7 0 [A.319 A.401 A.327 A.400] 4 7 nts=11 GUUACAAAGUC A.G319,A.U320,A.U321,A.A322,A.C323,A.A324,A.A325,A.A326,A.G327,A.U400,A.C401 nts=7 UUACAAA A.U320,A.U321,A.A322,A.C323,A.A324,A.A325,A.A326 nts=0 28 bulge: nts=13; [9,0]; linked by [#-48,#129] summary: [2] 9 0 [A.2139 A.2208 A.2149 A.2207] 1 3 nts=13 GUACAGGAUAGCC A.G2139,A.U2140,A.A2141,A.C2142,A.A2143,A.G2144,A.G2145,A.A2146,A.U2147,A.A2148,A.G2149,A.C2207,A.C2208 nts=9 UACAGGAUA A.U2140,A.A2141,A.C2142,A.A2143,A.G2144,A.G2145,A.A2146,A.U2147,A.A2148 nts=0 **************************************************************************** List of 82 internal loops 1 symmetric internal loop: nts=6; [1,1]; linked by [#21,#22] summary: [2] 1 1 [A.279 A.292 A.281 A.290] 4 3 nts=6 AGAUCU A.A279,A.G280,A.A281,A.U290,A.C291,A.U292 nts=1 G A.G280 nts=1 C A.C291 2 symmetric internal loop: nts=6; [1,1]; linked by [#26,#27] summary: [2] 1 1 [A.333 A.394 A.335 A.392] 7 2 nts=6 AGGCUU A.A333,A.G334,A.G335,A.C392,A.U393,A.U394 nts=1 G A.G334 nts=1 U A.U393 3 symmetric internal loop: nts=6; [1,1]; linked by [#-16,#-17] summary: [2] 1 1 [A.608 A.621 A.610 A.619] 1 1 nts=6 CCUAUG A.C608,A.C609,A.U610,A.A619,A.U620,A.G621 nts=1 C A.C609 nts=1 U A.U620 4 symmetric internal loop: nts=6; [1,1]; linked by [#39,#40] summary: [2] 1 1 [A.639 A.709 A.641 A.707] 7 5 nts=6 CUCGUG A.C639,A.U640,A.C641,A.G707,A.U708,A.G709 nts=1 U A.U640 nts=1 U A.U708 5 symmetric internal loop: nts=6; [1,1]; linked by [#45,#-18] summary: [2] 1 1 [A.719 A.855 A.721 A.853] 2 1 nts=6 CCGCUG A.C719,A.C720,A.G721,A.C853,A.U854,A.G855 nts=1 C A.C720 nts=1 U A.U854 6 symmetric internal loop: nts=6; [1,1]; linked by [#58,#59] summary: [2] 1 1 [A.917 A.954 A.919 A.952] 3 2 nts=6 AUUAGU A.A917,A.U918,A.U919,A.A952,A.G953,A.U954 nts=1 U A.U918 nts=1 G A.G953 7 symmetric internal loop: nts=6; [1,1]; linked by [#60,#61] summary: [2] 1 1 [A.998 A.1011 A.1000 A.1009] 7 2 nts=6 GAGUCC A.G998,A.A999,A.G1000,A.U1009,A.C1010,A.C1011 nts=1 A A.A999 nts=1 C A.C1010 8 symmetric internal loop: nts=6; [1,1]; linked by [#-28,#69] summary: [2] 1 1 [A.1080 A.1167 A.1082 A.1165] 1 2 nts=6 GUGUGC A.G1080,A.U1081,A.G1082,A.U1165,A.G1166,A.C1167 nts=1 U A.U1081 nts=1 G A.G1166 9 symmetric internal loop: nts=6; [1,1]; linked by [#74,#75] summary: [2] 1 1 [A.1259 A.1270 A.1261 A.1268] 5 2 nts=6 GACGAC A.G1259,A.A1260,A.C1261,A.G1268,A.A1269,A.C1270 nts=1 A A.A1260 nts=1 A A.A1269 10 symmetric internal loop: nts=6; [1,1]; linked by [#95,#-33] summary: [2] 1 1 [A.1488 A.1597 A.1490 A.1595] 3 1 nts=6 GUAUUC A.G1488,A.U1489,A.A1490,A.U1595,A.U1596,A.C1597 nts=1 U A.U1489 nts=1 U A.U1596 11 symmetric internal loop: nts=6; [1,1]; linked by [#96,#-34] summary: [2] 1 1 [A.1494 A.1509 A.1496 A.1507] 3 1 nts=6 GCGUCC A.G1494,A.C1495,A.G1496,A.U1507,A.C1508,A.C1509 nts=1 C A.C1495 nts=1 C A.C1508 12 symmetric internal loop: nts=6; [1,1]; linked by [#105,#106] summary: [2] 1 1 [A.1708 A.2026 A.1710 A.2024] 8 2 nts=6 UAAUCA A.U1708,A.A1709,A.A1710,A.U2024,A.C2025,A.A2026 nts=1 A A.A1709 nts=1 C A.C2025 13 symmetric internal loop: nts=6; [1,1]; linked by [#125,#126] summary: [2] 1 1 [A.2114 A.2263 A.2116 A.2261] 2 5 nts=6 CUGCAG A.C2114,A.U2115,A.G2116,A.C2261,A.A2262,A.G2263 nts=1 U A.U2115 nts=1 A A.A2262 14 symmetric internal loop: nts=6; [1,1]; linked by [#-46,#-47] summary: [2] 1 1 [A.2122 A.2225 A.2124 A.2223] 1 1 nts=6 GAAUUC A.G2122,A.A2123,A.A2124,A.U2223,A.U2224,A.C2225 nts=1 A A.A2123 nts=1 U A.U2224 15 symmetric internal loop: nts=6; [1,1]; linked by [#-47,#127] summary: [2] 1 1 [A.2124 A.2223 A.2126 A.2221] 1 2 nts=6 AUGCCU A.A2124,A.U2125,A.G2126,A.C2221,A.C2222,A.U2223 nts=1 U A.U2125 nts=1 C A.C2222 16 symmetric internal loop: nts=6; [1,1]; linked by [#128,#-48] summary: [2] 1 1 [A.2137 A.2210 A.2139 A.2208] 8 1 nts=6 UUGCUG A.U2137,A.U2138,A.G2139,A.C2208,A.U2209,A.G2210 nts=1 U A.U2138 nts=1 U A.U2209 17 symmetric internal loop: nts=6; [1,1]; linked by [#135,#-53] summary: [2] 1 1 [A.2377 A.2398 A.2379 A.2396] 2 1 nts=6 UGCGCA A.U2377,A.G2378,A.C2379,A.G2396,A.C2397,A.A2398 nts=1 G A.G2378 nts=1 C A.C2397 18 symmetric internal loop: nts=6; [1,1]; linked by [#-61,#165] summary: [2] 1 1 [B.78 B.94 B.80 B.92] 1 5 nts=6 UCGCUG B.U78,B.C79,B.G80,B.C92,B.U93,B.G94 nts=1 C B.C79 nts=1 U B.U93 19 asymmetric internal loop: nts=7; [1,2]; linked by [#-24,#-25] summary: [2] 1 2 [A.909 A.962 A.911 A.959] 1 1 nts=7 GAGCUCC A.G909,A.A910,A.G911,A.C959,A.U960,A.C961,A.C962 nts=1 A A.A910 nts=2 UC A.U960,A.C961 20 asymmetric internal loop: nts=7; [2,1]; linked by [#68,#-28] summary: [2] 2 1 [A.1077 A.1169 A.1080 A.1167] 2 1 nts=7 GAUGCGC A.G1077,A.A1078,A.U1079,A.G1080,A.C1167,A.G1168,A.C1169 nts=2 AU A.A1078,A.U1079 nts=1 G A.G1168 21 asymmetric internal loop: nts=7; [1,2]; linked by [#-30,#72] summary: [2] 1 2 [A.1237 A.1290 A.1239 A.1287] 1 5 nts=7 CGUAGUG A.C1237,A.G1238,A.U1239,A.A1287,A.G1288,A.U1289,A.G1290 nts=1 G A.G1238 nts=2 GU A.G1288,A.U1289 22 asymmetric internal loop: nts=7; [2,1]; linked by [#99,#100] summary: [2] 2 1 [A.1534 A.1547 A.1537 A.1545] 6 2 nts=7 AUAGCGU A.A1534,A.U1535,A.A1536,A.G1537,A.C1545,A.G1546,A.U1547 nts=2 UA A.U1535,A.A1536 nts=1 G A.G1546 23 asymmetric internal loop: nts=7; [1,2]; linked by [#120,#121] summary: [2] 1 2 [A.2083 A.2644 A.2085 A.2641] 3 2 nts=7 ACGCUAU A.A2083,A.C2084,A.G2085,A.C2641,A.U2642,A.A2643,A.U2644 nts=1 C A.C2084 nts=2 UA A.U2642,A.A2643 24 asymmetric internal loop: nts=7; [1,2]; linked by [#157,#158] summary: [2] 1 2 [A.2868 A.2899 A.2870 A.2896] 5 3 nts=7 GAGUGAC A.G2868,A.A2869,A.G2870,A.U2896,A.G2897,A.A2898,A.C2899 nts=1 A A.A2869 nts=2 GA A.G2897,A.A2898 25 symmetric internal loop: nts=8; [2,2]; linked by [#-2,#10] summary: [2] 2 2 [A.62 A.92 A.65 A.89] 1 2 nts=8 CGAAUAAG A.C62,A.G63,A.A64,A.A65,A.U89,A.A90,A.A91,A.G92 nts=2 GA A.G63,A.A64 nts=2 AA A.A90,A.A91 26 asymmetric internal loop: nts=8; [1,3]; linked by [#27,#28] summary: [2] 1 3 [A.336 A.391 A.338 A.387] 2 3 nts=8 UAGCAAAA A.U336,A.A337,A.G338,A.C387,A.A388,A.A389,A.A390,A.A391 nts=1 A A.A337 nts=3 AAA A.A388,A.A389,A.A390 27 symmetric internal loop: nts=8; [2,2]; linked by [#36,#37] summary: [2] 2 2 [A.582 A.601 A.585 A.598] 4 4 nts=8 AGAGUGAU A.A582,A.G583,A.A584,A.G585,A.U598,A.G599,A.A600,A.U601 nts=2 GA A.G583,A.A584 nts=2 GA A.G599,A.A600 28 asymmetric internal loop: nts=8; [1,3]; linked by [#-23,#52] summary: [2] 1 3 [A.822 A.838 A.824 A.834] 1 3 nts=8 GGGCAAUC A.G822,A.G823,A.G824,A.C834,A.A835,A.A836,A.U837,A.C838 nts=1 G A.G823 nts=3 AAU A.A835,A.A836,A.U837 29 asymmetric internal loop: nts=8; [3,1]; linked by [#81,#82] summary: [2] 3 1 [A.1358 A.1372 A.1362 A.1370] 6 2 nts=8 GGAAGCGC A.G1358,A.G1359,A.A1360,A.A1361,A.G1362,A.C1370,A.G1371,A.C1372 nts=3 GAA A.G1359,A.A1360,A.A1361 nts=1 G A.G1371 30 symmetric internal loop: nts=8; [2,2]; linked by [#127,#128] summary: [2] 2 2 [A.2127 A.2220 A.2130 A.2217] 2 8 nts=8 UUGGUUGA A.U2127,A.U2128,A.G2129,A.G2130,A.U2217,A.U2218,A.G2219,A.A2220 nts=2 UG A.U2128,A.G2129 nts=2 UG A.U2218,A.G2219 31 symmetric internal loop: nts=8; [2,2]; linked by [#-49,#131] summary: [2] 2 2 [A.2168 A.2181 A.2171 A.2178] 1 2 nts=8 GGAGCUUC A.G2168,A.G2169,A.A2170,A.G2171,A.C2178,A.U2179,A.U2180,A.C2181 nts=2 GA A.G2169,A.A2170 nts=2 UU A.U2179,A.U2180 32 asymmetric internal loop: nts=8; [3,1]; linked by [#147,#148] summary: [2] 3 1 [A.2709 A.2756 A.2713 A.2754] 5 4 nts=8 CCGCUAUG A.C2709,A.C2710,A.G2711,A.C2712,A.U2713,A.A2754,A.U2755,A.G2756 nts=3 CGC A.C2710,A.G2711,A.C2712 nts=1 U A.U2755 33 asymmetric internal loop: nts=8; [1,3]; linked by [#-59,#163] summary: [2] 1 3 [B.27 B.53 B.29 B.49] 1 2 nts=8 ACCGAAGU B.A27,B.C28,B.C29,B.G49,B.A50,B.A51,B.G52,B.U53 nts=1 C B.C28 nts=3 AAG B.A50,B.A51,B.G52 34 asymmetric internal loop: nts=9; [3,2]; linked by [#56,#57] summary: [2] 3 2 [A.891 A.980 A.895 A.977] 7 5 nts=9 GUAAGUAUC A.G891,A.U892,A.A893,A.A894,A.G895,A.U977,A.A978,A.U979,A.C980 nts=3 UAA A.U892,A.A893,A.A894 nts=2 AU A.A978,A.U979 35 asymmetric internal loop: nts=9; [3,2]; linked by [#-25,#58] summary: [2] 3 2 [A.911 A.959 A.915 A.956] 1 3 nts=9 GCACUAAAC A.G911,A.C912,A.A913,A.C914,A.U915,A.A956,A.A957,A.A958,A.C959 nts=3 CAC A.C912,A.A913,A.C914 nts=2 AA A.A957,A.A958 36 asymmetric internal loop: nts=9; [3,2]; linked by [#91,#92] summary: [2] 3 2 [A.1463 A.1628 A.1467 A.1625] 2 4 nts=9 CAAUGCUAG A.C1463,A.A1464,A.A1465,A.U1466,A.G1467,A.C1625,A.U1626,A.A1627,A.G1628 nts=3 AAU A.A1464,A.A1465,A.U1466 nts=2 UA A.U1626,A.A1627 37 asymmetric internal loop: nts=9; [2,3]; linked by [#93,#94] summary: [2] 2 3 [A.1478 A.1609 A.1481 A.1605] 4 3 nts=9 GGAGCACAC A.G1478,A.G1479,A.A1480,A.G1481,A.C1605,A.A1606,A.C1607,A.A1608,A.C1609 nts=2 GA A.G1479,A.A1480 nts=3 ACA A.A1606,A.C1607,A.A1608 38 asymmetric internal loop: nts=9; [2,3]; linked by [#94,#95] summary: [2] 2 3 [A.1483 A.1603 A.1486 A.1599] 3 3 nts=9 AUAGUGAUU A.A1483,A.U1484,A.A1485,A.G1486,A.U1599,A.G1600,A.A1601,A.U1602,A.U1603 nts=2 UA A.U1484,A.A1485 nts=3 GAU A.G1600,A.A1601,A.U1602 39 asymmetric internal loop: nts=9; [1,4]; linked by [#98,#99] summary: [2] 1 4 [A.1527 A.1557 A.1529 A.1552] 4 6 nts=9 CUGCAUAAG A.C1527,A.U1528,A.G1529,A.C1552,A.A1553,A.U1554,A.A1555,A.A1556,A.G1557 nts=1 U A.U1528 nts=4 AUAA A.A1553,A.U1554,A.A1555,A.A1556 40 asymmetric internal loop: nts=9; [2,3]; linked by [#-37,#101] summary: [2] 2 3 [A.1573 A.1594 A.1576 A.1590] 1 2 nts=9 CGAGCGAAG A.C1573,A.G1574,A.A1575,A.G1576,A.C1590,A.G1591,A.A1592,A.A1593,A.G1594 nts=2 GA A.G1574,A.A1575 nts=3 GAA A.G1591,A.A1592,A.A1593 41 asymmetric internal loop: nts=9; [4,1]; linked by [#104,#105] summary: [2] 4 1 [A.1696 A.2035 A.1701 A.2033] 4 8 nts=9 GAGAACGAC A.G1696,A.A1697,A.G1698,A.A1699,A.A1700,A.C1701,A.G2033,A.A2034,A.C2035 nts=4 AGAA A.A1697,A.G1698,A.A1699,A.A1700 nts=1 A A.A2034 42 asymmetric internal loop: nts=9; [3,2]; linked by [#-44,#116] summary: [2] 3 2 [A.1875 A.1924 A.1879 A.1921] 1 2 nts=9 GAAGGCCCC A.G1875,A.A1876,A.A1877,A.G1878,A.G1879,A.C1921,A.C1922,A.C1923,A.C1924 nts=3 AAG A.A1876,A.A1877,A.G1878 nts=2 CC A.C1922,A.C1923 43 asymmetric internal loop: nts=9; [2,3]; linked by [#124,#125] summary: [2] 2 3 [A.2110 A.2268 A.2113 A.2264] 5 2 nts=9 CAGCGUGGG A.C2110,A.A2111,A.G2112,A.C2113,A.G2264,A.U2265,A.G2266,A.G2267,A.G2268 nts=2 AG A.A2111,A.G2112 nts=3 UGG A.U2265,A.G2266,A.G2267 44 asymmetric internal loop: nts=9; [3,2]; linked by [#-54,#-55] summary: [2] 3 2 [A.2490 A.2519 A.2494 A.2516] 1 1 nts=9 CUCCCGAGG A.C2490,A.U2491,A.C2492,A.C2493,A.C2494,A.G2516,A.A2517,A.G2518,A.G2519 nts=3 UCC A.U2491,A.C2492,A.C2493 nts=2 AG A.A2517,A.G2518 45 asymmetric internal loop: nts=10; [5,1]; linked by [#24,#25] summary: [2] 5 1 [A.310 A.406 A.316 A.404] 5 4 nts=10 CUGUACGCUG A.C310,A.U311,A.G312,A.U313,A.A314,A.C315,A.G316,A.C404,A.U405,A.G406 nts=5 UGUAC A.U311,A.G312,A.U313,A.A314,A.C315 nts=1 U A.U405 46 symmetric internal loop: nts=10; [3,3]; linked by [#41,#42] summary: [2] 3 3 [A.650 A.668 A.654 A.664] 3 3 nts=10 UUAAGCGGAG A.U650,A.U651,A.A652,A.A653,A.G654,A.C664,A.G665,A.G666,A.A667,A.G668 nts=3 UAA A.U651,A.A652,A.A653 nts=3 GGA A.G665,A.G666,A.A667 47 symmetric internal loop: nts=10; [3,3]; linked by [#-20,#49] summary: [2] 3 3 [A.750 A.775 A.754 A.771] 1 6 nts=10 UGAAGUGGAG A.U750,A.G751,A.A752,A.A753,A.G754,A.U771,A.G772,A.G773,A.A774,A.G775 nts=3 GAA A.G751,A.A752,A.A753 nts=3 GGA A.G772,A.G773,A.A774 48 symmetric internal loop: nts=10; [3,3]; linked by [#64,#65] summary: [2] 3 3 [A.1044 A.1203 A.1048 A.1199] 3 3 nts=10 CUAAGCGAAG A.C1044,A.U1045,A.A1046,A.A1047,A.G1048,A.C1199,A.G1200,A.A1201,A.A1202,A.G1203 nts=3 UAA A.U1045,A.A1046,A.A1047 nts=3 GAA A.G1200,A.A1201,A.A1202 49 symmetric internal loop: nts=10; [3,3]; linked by [#72,#73] summary: [2] 3 3 [A.1243 A.1283 A.1247 A.1279] 5 2 nts=10 AAGGGCGCUU A.A1243,A.A1244,A.G1245,A.G1246,A.G1247,A.C1279,A.G1280,A.C1281,A.U1282,A.U1283 nts=3 AGG A.A1244,A.G1245,A.G1246 nts=3 GCU A.G1280,A.C1281,A.U1282 50 symmetric internal loop: nts=10; [3,3]; linked by [#85,#86] summary: [2] 3 3 [A.1390 A.1419 A.1394 A.1415] 2 3 nts=10 CUAAGCGAUG A.C1390,A.U1391,A.A1392,A.A1393,A.G1394,A.C1415,A.G1416,A.A1417,A.U1418,A.G1419 nts=3 UAA A.U1391,A.A1392,A.A1393 nts=3 GAU A.G1416,A.A1417,A.U1418 51 symmetric internal loop: nts=10; [3,3]; linked by [#86,#87] summary: [2] 3 3 [A.1396 A.1413 A.1400 A.1409] 3 3 nts=10 CGAGGCGUAG A.C1396,A.G1397,A.A1398,A.G1399,A.G1400,A.C1409,A.G1410,A.U1411,A.A1412,A.G1413 nts=3 GAG A.G1397,A.A1398,A.G1399 nts=3 GUA A.G1410,A.U1411,A.A1412 52 asymmetric internal loop: nts=10; [4,2]; linked by [#-39,#-40] summary: [2] 4 2 [A.1714 A.2022 A.1719 A.2019] 1 1 nts=10 ACUCGGCUGU A.A1714,A.C1715,A.U1716,A.C1717,A.G1718,A.G1719,A.C2019,A.U2020,A.G2021,A.U2022 nts=4 CUCG A.C1715,A.U1716,A.C1717,A.G1718 nts=2 UG A.U2020,A.G2021 53 symmetric internal loop: nts=10; [3,3]; linked by [#116,#117] summary: [2] 3 3 [A.1880 A.1920 A.1884 A.1916] 2 2 nts=10 UUAAGUGAAG A.U1880,A.U1881,A.A1882,A.A1883,A.G1884,A.U1916,A.G1917,A.A1918,A.A1919,A.G1920 nts=3 UAA A.U1881,A.A1882,A.A1883 nts=3 GAA A.G1917,A.A1918,A.A1919 54 symmetric internal loop: nts=10; [3,3]; linked by [#-53,#136] summary: [2] 3 3 [A.2379 A.2396 A.2383 A.2392] 1 2 nts=10 CGAGAUCGAG A.C2379,A.G2380,A.A2381,A.G2382,A.A2383,A.U2392,A.C2393,A.G2394,A.A2395,A.G2396 nts=3 GAG A.G2380,A.A2381,A.G2382 nts=3 CGA A.C2393,A.G2394,A.A2395 55 symmetric internal loop: nts=10; [3,3]; linked by [#148,#149] summary: [2] 3 3 [A.2716 A.2751 A.2720 A.2747] 4 5 nts=10 UGUACGGUAG A.U2716,A.G2717,A.U2718,A.A2719,A.C2720,A.G2747,A.G2748,A.U2749,A.A2750,A.G2751 nts=3 GUA A.G2717,A.U2718,A.A2719 nts=3 GUA A.G2748,A.U2749,A.A2750 56 asymmetric internal loop: nts=11; [4,3]; linked by [#108,#109] summary: [2] 4 3 [A.1756 A.1776 A.1761 A.1772] 5 4 nts=11 UGUUAGCGAGA A.U1756,A.G1757,A.U1758,A.U1759,A.A1760,A.G1761,A.C1772,A.G1773,A.A1774,A.G1775,A.A1776 nts=4 GUUA A.G1757,A.U1758,A.U1759,A.A1760 nts=3 GAG A.G1773,A.A1774,A.G1775 57 asymmetric internal loop: nts=11; [4,3]; linked by [#158,#159] summary: [2] 4 3 [A.2872 A.2894 A.2877 A.2890] 3 5 k-turn:undecided nts=11 UGGAAGUGGAG A.U2872,A.G2873,A.G2874,A.A2875,A.A2876,A.G2877,A.U2890,A.G2891,A.G2892,A.A2893,A.G2894 nts=4 GGAA A.G2873,A.G2874,A.A2875,A.A2876 nts=3 GGA A.G2891,A.G2892,A.A2893 58 asymmetric internal loop: nts=12; [5,3]; linked by [#67,#-27] summary: [2] 5 3 [A.1064 A.1190 A.1070 A.1186] 6 1 nts=12 UUAAGUGCUAAA A.U1064,A.U1065,A.A1066,A.A1067,A.G1068,A.U1069,A.G1070,A.C1186,A.U1187,A.A1188,A.A1189,A.A1190 nts=5 UAAGU A.U1065,A.A1066,A.A1067,A.G1068,A.U1069 nts=3 UAA A.U1187,A.A1188,A.A1189 59 symmetric internal loop: nts=12; [4,4]; linked by [#69,#70] summary: [2] 4 4 [A.1083 A.1164 A.1088 A.1159] 2 2 nts=12 GAGUUGUGACUC A.G1083,A.A1084,A.G1085,A.U1086,A.U1087,A.G1088,A.U1159,A.G1160,A.A1161,A.C1162,A.U1163,A.C1164 nts=4 AGUU A.A1084,A.G1085,A.U1086,A.U1087 nts=4 GACU A.G1160,A.A1161,A.C1162,A.U1163 60 asymmetric internal loop: nts=12; [6,2]; linked by [#90,#91] summary: [2] 6 2 [A.1455 A.1632 A.1462 A.1629] 6 2 k-turn:normal nts=12 CAUUUGAGCGAG A.C1455,A.A1456,A.U1457,A.U1458,A.U1459,A.G1460,A.A1461,A.G1462,A.C1629,A.G1630,A.A1631,A.G1632 nts=6 AUUUGA A.A1456,A.U1457,A.U1458,A.U1459,A.G1460,A.A1461 nts=2 GA A.G1630,A.A1631 61 symmetric internal loop: nts=12; [4,4]; linked by [#97,#-36] summary: [2] 4 4 [A.1514 A.1571 A.1519 A.1566] 2 1 nts=12 CCAAGCGUGAUG A.C1514,A.C1515,A.A1516,A.A1517,A.G1518,A.C1519,A.G1566,A.U1567,A.G1568,A.A1569,A.U1570,A.G1571 nts=4 CAAG A.C1515,A.A1516,A.A1517,A.G1518 nts=4 UGAU A.U1567,A.G1568,A.A1569,A.U1570 62 symmetric internal loop: nts=12; [4,4]; linked by [#151,#152] summary: [2] 4 4 [A.2766 A.2796 A.2771 A.2791] 3 4 nts=12 GAUAAGUGAAGC A.G2766,A.A2767,A.U2768,A.A2769,A.A2770,A.G2771,A.U2791,A.G2792,A.A2793,A.A2794,A.G2795,A.C2796 nts=4 AUAA A.A2767,A.U2768,A.A2769,A.A2770 nts=4 GAAG A.G2792,A.A2793,A.A2794,A.G2795 63 asymmetric internal loop: nts=13; [3,6]; linked by [#11,#12] summary: [2] 3 6 [A.81 A.104 A.85 A.97] 6 3 k-turn:normal nts=13 GGGAGCUUUGAUC A.G81,A.G82,A.G83,A.A84,A.G85,A.C97,A.U98,A.U99,A.U100,A.G101,A.A102,A.U103,A.C104 nts=3 GGA A.G82,A.G83,A.A84 nts=6 UUUGAU A.U98,A.U99,A.U100,A.G101,A.A102,A.U103 64 asymmetric internal loop: nts=13; [3,6]; linked by [#-18,#46] summary: [2] 3 6 [A.721 A.853 A.725 A.846] 1 6 nts=13 GAAACGAGAUAGC A.G721,A.A722,A.A723,A.A724,A.C725,A.G846,A.A847,A.G848,A.A849,A.U850,A.A851,A.G852,A.C853 nts=3 AAA A.A722,A.A723,A.A724 nts=6 AGAUAG A.A847,A.G848,A.A849,A.U850,A.A851,A.G852 65 asymmetric internal loop: nts=13; [6,3]; linked by [#73,#74] summary: [2] 6 3 [A.1248 A.1278 A.1255 A.1274] 2 5 k-turn:normal nts=13 CUGUGAAGUGGAG A.C1248,A.U1249,A.G1250,A.U1251,A.G1252,A.A1253,A.A1254,A.G1255,A.U1274,A.G1275,A.G1276,A.A1277,A.G1278 nts=6 UGUGAA A.U1249,A.G1250,A.U1251,A.G1252,A.A1253,A.A1254 nts=3 GGA A.G1275,A.G1276,A.A1277 66 asymmetric internal loop: nts=13; [4,5]; linked by [#-36,#98] summary: [2] 4 5 [A.1519 A.1566 A.1524 A.1560] 1 4 nts=13 CAGUUAUGAGCUG A.C1519,A.A1520,A.G1521,A.U1522,A.U1523,A.A1524,A.U1560,A.G1561,A.A1562,A.G1563,A.C1564,A.U1565,A.G1566 nts=4 AGUU A.A1520,A.G1521,A.U1522,A.U1523 nts=5 GAGCU A.G1561,A.A1562,A.G1563,A.C1564,A.U1565 67 asymmetric internal loop: nts=13; [4,5]; linked by [#107,#-41] summary: [2] 4 5 [A.1731 A.1747 A.1736 A.1741] 5 1 nts=13 CGUAACGGAGAAG A.C1731,A.G1732,A.U1733,A.A1734,A.A1735,A.C1736,A.G1741,A.G1742,A.A1743,A.G1744,A.A1745,A.A1746,A.G1747 nts=4 GUAA A.G1732,A.U1733,A.A1734,A.A1735 nts=5 GAGAA A.G1742,A.A1743,A.G1744,A.A1745,A.A1746 68 asymmetric internal loop: nts=13; [5,4]; linked by [#162,#-59] summary: [2] 5 4 [B.21 B.58 B.27 B.53] 6 1 nts=13 GGUCACAUUAAGC B.G21,B.G22,B.U23,B.C24,B.A25,B.C26,B.A27,B.U53,B.U54,B.A55,B.A56,B.G57,B.C58 nts=5 GUCAC B.G22,B.U23,B.C24,B.A25,B.C26 nts=4 UAAG B.U54,B.A55,B.A56,B.G57 69 symmetric internal loop: nts=14; [5,5]; linked by [#2,#-1] summary: [2] 5 5 [A.24 A.562 A.30 A.556] 10 1 nts=14 GUGGAUGCUGAAAC A.G24,A.U25,A.G26,A.G27,A.A28,A.U29,A.G30,A.C556,A.U557,A.G558,A.A559,A.A560,A.A561,A.C562 nts=5 UGGAU A.U25,A.G26,A.G27,A.A28,A.U29 nts=5 UGAAA A.U557,A.G558,A.A559,A.A560,A.A561 70 asymmetric internal loop: nts=14; [3,7]; linked by [#144,#145] summary: [2] 3 7 [A.2665 A.2811 A.2669 A.2803] 7 4 nts=14 UUGAGCAAGAUGAG A.U2665,A.U2666,A.G2667,A.A2668,A.G2669,A.C2803,A.A2804,A.A2805,A.G2806,A.A2807,A.U2808,A.G2809,A.A2810,A.G2811 nts=3 UGA A.U2666,A.G2667,A.A2668 nts=7 AAGAUGA A.A2804,A.A2805,A.G2806,A.A2807,A.U2808,A.G2809,A.A2810 71 symmetric internal loop: nts=14; [5,5]; linked by [#163,#-60] summary: [2] 5 5 [B.30 B.48 B.36 B.42] 2 1 nts=14 CGUUCCCGAACACG B.C30,B.G31,B.U32,B.U33,B.C34,B.C35,B.C36,B.G42,B.A43,B.A44,B.C45,B.A46,B.C47,B.G48 nts=5 GUUCC B.G31,B.U32,B.U33,B.C34,B.C35 nts=5 AACAC B.A43,B.A44,B.C45,B.A46,B.C47 72 asymmetric internal loop: nts=15; [5,6]; linked by [#16,#-6] summary: [2] 5 6 [A.191 A.211 A.197 A.204] 5 1 nts=15 GGAACUGCUAAGUAC A.G191,A.G192,A.A193,A.A194,A.C195,A.U196,A.G197,A.C204,A.U205,A.A206,A.A207,A.G208,A.U209,A.A210,A.C211 nts=5 GAACU A.G192,A.A193,A.A194,A.C195,A.U196 nts=6 UAAGUA A.U205,A.A206,A.A207,A.G208,A.U209,A.A210 73 asymmetric internal loop: nts=15; [6,5]; linked by [#18,#19] summary: [2] 6 5 [A.241 A.262 A.248 A.256] 4 2 nts=15 CUGAGUAGCGAAACG A.C241,A.U242,A.G243,A.A244,A.G245,A.U246,A.A247,A.G248,A.C256,A.G257,A.A258,A.A259,A.A260,A.C261,A.G262 nts=6 UGAGUA A.U242,A.G243,A.A244,A.G245,A.U246,A.A247 nts=5 GAAAC A.G257,A.A258,A.A259,A.A260,A.C261 74 asymmetric internal loop: nts=15; [6,5]; linked by [#-31,#76] summary: [2] 6 5 [A.1302 A.2046 A.1309 A.2040] 1 2 nts=15 AUGAGUAGUGAAAUU A.A1302,A.U1303,A.G1304,A.A1305,A.G1306,A.U1307,A.A1308,A.G1309,A.U2040,A.G2041,A.A2042,A.A2043,A.A2044,A.U2045,A.U2046 nts=6 UGAGUA A.U1303,A.G1304,A.A1305,A.G1306,A.U1307,A.A1308 nts=5 GAAAU A.G2041,A.A2042,A.A2043,A.A2044,A.U2045 75 asymmetric internal loop: nts=15; [6,5]; linked by [#146,#-57] summary: [2] 6 5 [A.2680 A.2698 A.2687 A.2692] 6 1 nts=15 CUUAGUACGGACCGG A.C2680,A.U2681,A.U2682,A.A2683,A.G2684,A.U2685,A.A2686,A.C2687,A.G2692,A.G2693,A.A2694,A.C2695,A.C2696,A.G2697,A.G2698 nts=6 UUAGUA A.U2681,A.U2682,A.A2683,A.G2684,A.U2685,A.A2686 nts=5 GACCG A.G2693,A.A2694,A.C2695,A.C2696,A.G2697 76 asymmetric internal loop: nts=16; [5,7]; linked by [#113,#114] summary: [2] 5 7 [A.1827 A.1850 A.1833 A.1842] 7 3 k-turn:undecided nts=16 UGCGAAGCGAAGUAUA A.U1827,A.G1828,A.C1829,A.G1830,A.A1831,A.A1832,A.G1833,A.C1842,A.G1843,A.A1844,A.A1845,A.G1846,A.U1847,A.A1848,A.U1849,A.A1850 nts=5 GCGAA A.G1828,A.C1829,A.G1830,A.A1831,A.A1832 nts=7 GAAGUAU A.G1843,A.A1844,A.A1845,A.G1846,A.U1847,A.A1848,A.U1849 77 asymmetric internal loop: nts=18; [2,12]; linked by [#-12,#35] summary: [2] 2 12 [A.528 A.555 A.531 A.542] 1 4 nts=18 GCACGAGUGAAAGAGAUC A.G528,A.C529,A.A530,A.C531,A.G542,A.A543,A.G544,A.U545,A.G546,A.A547,A.A548,A.A549,A.G550,A.A551,A.G552,A.A553,A.U554,A.C555 nts=2 CA A.C529,A.A530 nts=12 AGUGAAAGAGAU A.A543,A.G544,A.U545,A.G546,A.A547,A.A548,A.A549,A.G550,A.A551,A.G552,A.A553,A.U554 78 symmetric internal loop: nts=20; [8,8]; linked by [#164,#-61] summary: [2] 8 8 [B.69 B.103 B.78 B.94] 2 1 nts=20 CGAUGGUAGUGUGAGAGUAG B.C69,B.G70,B.A71,B.U72,B.G73,B.G74,B.U75,B.A76,B.G77,B.U78,B.G94,B.U95,B.G96,B.A97,B.G98,B.A99,B.G100,B.U101,B.A102,B.G103 nts=8 GAUGGUAG B.G70,B.A71,B.U72,B.G73,B.G74,B.U75,B.A76,B.G77 nts=8 UGAGAGUA B.U95,B.G96,B.A97,B.G98,B.A99,B.G100,B.U101,B.A102 79 asymmetric internal loop: nts=21; [10,7]; linked by [#130,#-49] summary: [2] 10 7 [A.2157 A.2189 A.2168 A.2181] 2 1 nts=21 CCUUGGAAACCGCGGUGGAGG A.C2157,A.C2158,A.U2159,A.U2160,A.G2161,A.G2162,A.A2163,A.A2164,A.A2165,A.C2166,A.C2167,A.G2168,A.C2181,A.G2182,A.G2183,A.U2184,A.G2185,A.G2186,A.A2187,A.G2188,A.G2189 nts=10 CUUGGAAACC A.C2158,A.U2159,A.U2160,A.G2161,A.G2162,A.A2163,A.A2164,A.A2165,A.C2166,A.C2167 nts=7 GGUGGAG A.G2182,A.G2183,A.U2184,A.G2185,A.G2186,A.A2187,A.G2188 80 asymmetric internal loop: nts=22; [4,14]; linked by [#129,#130] summary: [2] 4 14 [A.2151 A.2205 A.2156 A.2190] 3 2 nts=22 UAGGAGCAUCGGUGGGAUACUA A.U2151,A.A2152,A.G2153,A.G2154,A.A2155,A.G2156,A.C2190,A.A2191,A.U2192,A.C2193,A.G2194,A.G2195,A.U2196,A.G2197,A.G2198,A.G2199,A.A2200,A.U2201,A.A2202,A.C2203,A.U2204,A.A2205 nts=4 AGGA A.A2152,A.G2153,A.G2154,A.A2155 nts=14 AUCGGUGGGAUACU A.A2191,A.U2192,A.C2193,A.G2194,A.G2195,A.U2196,A.G2197,A.G2198,A.G2199,A.A2200,A.U2201,A.A2202,A.C2203,A.U2204 81 asymmetric internal loop: nts=23; [9,10]; linked by [#57,#-24] summary: [2] 9 10 [A.899 A.973 A.909 A.962] 5 1 nts=23 CUUGGAGGUAGCGAAUGCCAAUG A.C899,A.U900,A.U901,A.G902,A.G903,A.A904,A.G905,A.G906,A.U907,A.A908,A.G909,A.C962,A.G963,A.A964,A.A965,A.U966,A.G967,A.C968,A.C969,A.A970,A.A971,A.U972,A.G973 nts=9 UUGGAGGUA A.U900,A.U901,A.G902,A.G903,A.A904,A.G905,A.G906,A.U907,A.A908 nts=10 GAAUGCCAAU A.G963,A.A964,A.A965,A.U966,A.G967,A.C968,A.C969,A.A970,A.A971,A.U972 82 asymmetric internal loop: nts=29; [4,21]; linked by [#-50,#-51] summary: [2] 4 21 [A.2324 A.2366 A.2329 A.2344] 1 1 nts=29 CUCAGAUUCGCAGAGUGUAAAGGCACAAG A.C2324,A.U2325,A.C2326,A.A2327,A.G2328,A.A2329,A.U2344,A.U2345,A.C2346,A.G2347,A.C2348,A.A2349,A.G2350,A.A2351,A.G2352,A.U2353,A.G2354,A.U2355,A.A2356,A.A2357,A.A2358,A.G2359,A.G2360,A.C2361,A.A2362,A.C2363,A.A2364,A.A2365,A.G2366 nts=4 UCAG A.U2325,A.C2326,A.A2327,A.G2328 nts=21 UCGCAGAGUGUAAAGGCACAA A.U2345,A.C2346,A.G2347,A.C2348,A.A2349,A.G2350,A.A2351,A.G2352,A.U2353,A.G2354,A.U2355,A.A2356,A.A2357,A.A2358,A.G2359,A.G2360,A.C2361,A.A2362,A.C2363,A.A2364,A.A2365 **************************************************************************** List of 27 junctions 1 3-way junction: nts=12; [0,6,0]; linked by [#-1,#3,#-12] summary: [3] 0 6 0 [A.30 A.556 A.31 A.521 A.528 A.555] 1 2 1 nts=12 GCGUGAAAAGCC A.G30,A.C31,A.G521,A.U522,A.G523,A.A524,A.A525,A.A526,A.A527,A.G528,A.C555,A.C556 nts=0 nts=6 UGAAAA A.U522,A.G523,A.A524,A.A525,A.A526,A.A527 nts=0 2 3-way junction: nts=12; [1,3,2]; linked by [#-19,#48,#50] summary: [3] 1 3 2 [A.745 A.810 A.747 A.779 A.783 A.807] 1 3 3 nts=12 CAGCGAACGAUG A.C745,A.A746,A.G747,A.C779,A.G780,A.A781,A.A782,A.C783,A.G807,A.A808,A.U809,A.G810 nts=1 A A.A746 nts=3 GAA A.G780,A.A781,A.A782 nts=2 AU A.A808,A.U809 3 3-way junction: nts=13; [4,1,2]; linked by [#78,#79,#103] summary: [3] 4 1 2 [A.1337 A.1687 A.1342 A.1670 A.1672 A.1684] 4 3 4 nts=13 CGAAUGCGAUAAG A.C1337,A.G1338,A.A1339,A.A1340,A.U1341,A.G1342,A.C1670,A.G1671,A.A1672,A.U1684,A.A1685,A.A1686,A.G1687 nts=4 GAAU A.G1338,A.A1339,A.A1340,A.U1341 nts=1 G A.G1671 nts=2 AA A.A1685,A.A1686 4 3-way junction: nts=13; [0,4,3]; linked by [#154,#155,#156] summary: [3] 0 4 3 [A.2839 A.2911 A.2840 A.2856 A.2861 A.2907] 4 5 3 nts=13 CCGUUGAUAAUCG A.C2839,A.C2840,A.G2856,A.U2857,A.U2858,A.G2859,A.A2860,A.U2861,A.A2907,A.A2908,A.U2909,A.C2910,A.G2911 nts=0 nts=4 UUGA A.U2857,A.U2858,A.G2859,A.A2860 nts=3 AUC A.A2908,A.U2909,A.C2910 5 3-way junction: nts=13; [4,1,2]; linked by [#160,#161,#164] summary: [3] 4 1 2 [B.9 B.107 B.14 B.66 B.68 B.104] 7 2 2 nts=13 CGAUAGCGCGACG B.C9,B.G10,B.A11,B.U12,B.A13,B.G14,B.C66,B.G67,B.C68,B.G104,B.A105,B.C106,B.G107 nts=4 GAUA B.G10,B.A11,B.U12,B.A13 nts=1 G B.G67 nts=2 AC B.A105,B.C106 6 3-way junction: nts=14; [5,1,2]; linked by [#46,#47,#-23] summary: [3] 5 1 2 [A.730 A.841 A.736 A.820 A.822 A.838] 6 9 1 nts=14 UGAUCUAUAGCGAA A.U730,A.G731,A.A732,A.U733,A.C734,A.U735,A.A736,A.U820,A.A821,A.G822,A.C838,A.G839,A.A840,A.A841 nts=5 GAUCU A.G731,A.A732,A.U733,A.C734,A.U735 nts=1 A A.A821 nts=2 GA A.G839,A.A840 7 3-way junction: nts=14; [2,1,5]; linked by [#138,#139,#141] summary: [3] 2 1 5 [A.2546 A.2596 A.2549 A.2574 A.2576 A.2590] 5 3 5 nts=14 CAUCGUUAUUAAAG A.C2546,A.A2547,A.U2548,A.C2549,A.G2574,A.U2575,A.U2576,A.A2590,A.U2591,A.U2592,A.A2593,A.A2594,A.A2595,A.G2596 nts=2 AU A.A2547,A.U2548 nts=1 U A.U2575 nts=5 UUAAA A.U2591,A.U2592,A.A2593,A.A2594,A.A2595 8 3-way junction: nts=14; [1,4,3]; linked by [#-58,#153,#154] summary: [3] 1 4 3 [A.2818 A.2918 A.2820 A.2831 A.2836 A.2914] 1 4 4 nts=14 CAUAGUAAGCGAGG A.C2818,A.A2819,A.U2820,A.A2831,A.G2832,A.U2833,A.A2834,A.A2835,A.G2836,A.C2914,A.G2915,A.A2916,A.G2917,A.G2918 nts=1 A A.A2819 nts=4 GUAA A.G2832,A.U2833,A.A2834,A.A2835 nts=3 GAG A.G2915,A.A2916,A.G2917 9 3-way junction: nts=15; [4,0,5]; linked by [#92,#93,#-38] summary: [3] 4 0 5 [A.1470 A.1622 A.1475 A.1612 A.1613 A.1616] 4 4 1 nts=15 GGGACGCCGAAAAGC A.G1470,A.G1471,A.G1472,A.A1473,A.C1474,A.G1475,A.C1612,A.C1613,A.G1616,A.A1617,A.A1618,A.A1619,A.A1620,A.G1621,A.C1622 nts=4 GGAC A.G1471,A.G1472,A.A1473,A.C1474 nts=0 nts=5 AAAAG A.A1617,A.A1618,A.A1619,A.A1620,A.G1621 10 3-way junction: nts=16; [3,5,2]; linked by [#79,#80,#102] summary: [3] 3 5 2 [A.1344 A.1668 A.1348 A.1650 A.1656 A.1665] 3 2 2 nts=16 CUAAGCGCAAACGUAG A.C1344,A.U1345,A.A1346,A.A1347,A.G1348,A.C1650,A.G1651,A.C1652,A.A1653,A.A1654,A.A1655,A.C1656,A.G1665,A.U1666,A.A1667,A.G1668 nts=3 UAA A.U1345,A.A1346,A.A1347 nts=5 GCAAA A.G1651,A.C1652,A.A1653,A.A1654,A.A1655 nts=2 UA A.U1666,A.A1667 11 3-way junction: nts=16; [1,4,5]; linked by [#126,#-46,#132] summary: [3] 1 4 5 [A.2120 A.2257 A.2122 A.2225 A.2230 A.2251] 5 1 2 nts=16 UUGCUAACCGAGACAG A.U2120,A.U2121,A.G2122,A.C2225,A.U2226,A.A2227,A.A2228,A.C2229,A.C2230,A.G2251,A.A2252,A.G2253,A.A2254,A.C2255,A.A2256,A.G2257 nts=1 U A.U2121 nts=4 UAAC A.U2226,A.A2227,A.A2228,A.C2229 nts=5 AGACA A.A2252,A.G2253,A.A2254,A.C2255,A.A2256 12 3-way junction: nts=27; [2,15,4]; linked by [#3,#4,#34] summary: [3] 2 15 4 [A.32 A.520 A.35 A.492 A.508 A.515] 2 2 2 nts=27 CUUGCGAUAGUGAACCAGUACGGAAAG A.C32,A.U33,A.U34,A.G35,A.C492,A.G493,A.A494,A.U495,A.A496,A.G497,A.U498,A.G499,A.A500,A.A501,A.C502,A.C503,A.A504,A.G505,A.U506,A.A507,A.C508,A.G515,A.G516,A.A517,A.A518,A.A519,A.G520 nts=2 UU A.U33,A.U34 nts=15 GAUAGUGAACCAGUA A.G493,A.A494,A.U495,A.A496,A.G497,A.U498,A.G499,A.A500,A.A501,A.C502,A.C503,A.A504,A.G505,A.U506,A.A507 nts=4 GAAA A.G516,A.A517,A.A518,A.A519 13 4-way junction: nts=10; [1,1,0,0]; linked by [#-33,#96,#97,#-37] summary: [4] 1 1 0 0 [A.1490 A.1595 A.1492 A.1511 A.1513 A.1572 A.1573 A.1594] 1 3 2 1 nts=10 AAGCGUGCGU A.A1490,A.A1491,A.G1492,A.C1511,A.G1512,A.U1513,A.G1572,A.C1573,A.G1594,A.U1595 nts=1 A A.A1491 nts=1 G A.G1512 nts=0 nts=0 14 4-way junction: nts=13; [2,2,0,1]; linked by [#9,#-2,#12,#10] summary: [4] 2 2 0 1 [A.59 A.68 A.62 A.92 A.95 A.87 A.88 A.66] 3 1 3 2 nts=13 GGACGCAAUGCAC A.G59,A.G60,A.A61,A.C62,A.G92,A.C93,A.A94,A.A95,A.U87,A.G88,A.C66,A.A67,A.C68 nts=2 GA A.G60,A.A61 nts=2 CA A.C93,A.A94 nts=0 nts=1 A A.A67 15 4-way junction: nts=14; [4,0,2,0]; linked by [#76,#77,#78,#104] summary: [4] 4 0 2 0 [A.1310 A.2039 A.1315 A.1333 A.1334 A.1690 A.1693 A.2038] 2 6 4 4 nts=14 CGAAAGCCGAUCGG A.C1310,A.G1311,A.A1312,A.A1313,A.A1314,A.G1315,A.C1333,A.C1334,A.G1690,A.A1691,A.U1692,A.C1693,A.G2038,A.G2039 nts=4 GAAA A.G1311,A.A1312,A.A1313,A.A1314 nts=0 nts=2 AU A.A1691,A.U1692 nts=0 16 4-way junction: nts=15; [2,1,3,1]; linked by [#145,#146,#147,#151] summary: [4] 2 1 3 1 [A.2672 A.2800 A.2675 A.2703 A.2705 A.2760 A.2764 A.2798] 4 6 5 3 nts=15 GAGCGACGGACGCCC A.G2672,A.A2673,A.G2674,A.C2675,A.G2703,A.A2704,A.C2705,A.G2760,A.G2761,A.A2762,A.C2763,A.G2764,A.C2798,A.C2799,A.C2800 nts=2 AG A.A2673,A.G2674 nts=1 A A.A2704 nts=3 GAC A.G2761,A.A2762,A.C2763 nts=1 C A.C2799 17 4-way junction: nts=19; [4,4,1,2]; linked by [#20,#21,#-8,#33] summary: [4] 4 4 1 2 [A.271 A.471 A.276 A.295 A.300 A.451 A.453 A.468] 3 4 1 5 nts=19 CCAAACGGGUUGCCGCAAG A.C271,A.C272,A.A273,A.A274,A.A275,A.C276,A.G295,A.G296,A.G297,A.U298,A.U299,A.G300,A.C451,A.C452,A.G453,A.C468,A.A469,A.A470,A.G471 nts=4 CAAA A.C272,A.A273,A.A274,A.A275 nts=4 GGUU A.G296,A.G297,A.U298,A.U299 nts=1 C A.C452 nts=2 AA A.A469,A.A470 18 4-way junction: nts=21; [2,3,2,6]; linked by [#40,#41,#43,#44] summary: [4] 2 3 2 6 [A.645 A.703 A.648 A.670 A.674 A.681 A.684 A.696] 5 3 2 4 nts=21 CAAGCGCAGCGAGCGCAUGAG A.C645,A.A646,A.A647,A.G648,A.C670,A.G671,A.C672,A.A673,A.G674,A.C681,A.G682,A.A683,A.G684,A.C696,A.G697,A.C698,A.A699,A.U700,A.G701,A.A702,A.G703 nts=2 AA A.A646,A.A647 nts=3 GCA A.G671,A.C672,A.A673 nts=2 GA A.G682,A.A683 nts=6 GCAUGA A.G697,A.C698,A.A699,A.U700,A.G701,A.A702 19 5-way junction: nts=23; [4,2,2,0,5]; linked by [#38,#39,#45,#53,#-30] summary: [5] 4 2 2 0 5 [A.628 A.1296 A.633 A.715 A.718 A.856 A.859 A.1236 A.1237 A.1290] 6 7 2 6 1 nts=23 CGAGUUAGACGUUCGCGAGAAUG A.C628,A.G629,A.A630,A.G631,A.U632,A.U633,A.A715,A.G716,A.A717,A.C718,A.G856,A.U857,A.U858,A.C859,A.G1236,A.C1237,A.G1290,A.A1291,A.G1292,A.A1293,A.A1294,A.U1295,A.G1296 nts=4 GAGU A.G629,A.A630,A.G631,A.U632 nts=2 GA A.G716,A.A717 nts=2 UU A.U857,A.U858 nts=0 nts=5 AGAAU A.A1291,A.G1292,A.A1293,A.A1294,A.U1295 20 5-way junction: nts=24; [6,4,0,2,2]; linked by [#7,#8,#13,#14,#-4] summary: [5] 6 4 0 2 2 [A.47 A.180 A.54 A.115 A.120 A.129 A.130 A.149 A.152 A.177] 2 3 3 7 1 nts=24 CGAUGAAGCGAAUGCAUAUCGAAG A.C47,A.G48,A.A49,A.U50,A.G51,A.A52,A.A53,A.G54,A.C115,A.G116,A.A117,A.A118,A.U119,A.G120,A.C129,A.A130,A.U149,A.A150,A.U151,A.C152,A.G177,A.A178,A.A179,A.G180 nts=6 GAUGAA A.G48,A.A49,A.U50,A.G51,A.A52,A.A53 nts=4 GAAU A.G116,A.A117,A.A118,A.U119 nts=0 nts=2 AU A.A150,A.U151 nts=2 AA A.A178,A.A179 21 5-way junction: nts=25; [7,0,0,7,1]; linked by [#-40,#107,#108,#-43,#110] summary: [5] 7 0 0 7 1 [A.1719 A.2019 A.1727 A.1751 A.1752 A.1780 A.1781 A.1785 A.1793 A.2017] 1 5 5 1 7 nts=25 GCAAAAUGAUGCCGUGAAUAGGCAC A.G1719,A.C1720,A.A1721,A.A1722,A.A1723,A.A1724,A.U1725,A.G1726,A.A1727,A.U1751,A.G1752,A.C1780,A.C1781,A.G1785,A.U1786,A.G1787,A.A1788,A.A1789,A.U1790,A.A1791,A.G1792,A.G1793,A.C2017,A.A2018,A.C2019 nts=7 CAAAAUG A.C1720,A.A1721,A.A1722,A.A1723,A.A1724,A.U1725,A.G1726 nts=0 nts=0 nts=7 UGAAUAG A.U1786,A.G1787,A.A1788,A.A1789,A.U1790,A.A1791,A.G1792 nts=1 A A.A2018 22 6-way junction: nts=22; [1,1,0,2,1,5]; linked by [#-15,#-16,#38,#-31,#-45,#118] summary: [6] 1 1 0 2 1 5 [A.606 A.2062 A.608 A.621 A.623 A.1301 A.1302 A.2046 A.2049 A.2063 A.2065 A.2056] 1 1 6 1 1 5 nts=22 UGCGAAUAUAUAUGCGUGAAGA A.U606,A.G607,A.C608,A.G621,A.A622,A.A623,A.U1301,A.A1302,A.U2046,A.A2047,A.U2048,A.A2049,A.U2063,A.G2064,A.C2065,A.G2056,A.U2057,A.G2058,A.A2059,A.A2060,A.G2061,A.A2062 nts=1 G A.G607 nts=1 A A.A622 nts=0 nts=2 AU A.A2047,A.U2048 nts=1 G A.G2064 nts=5 UGAAG A.U2057,A.G2058,A.A2059,A.A2060,A.G2061 23* 6-way junction: nts=32; [0,1,5,11,3,0]; linked by [#65,#66,#-27,#68,#66,#-26] summary: [6] 0 1 5 11 3 0 [A.1050 A.1197 A.1051 A.1184 A.1186 A.1070 A.1076 A.1170 A.1182 A.1053 A.1057 A.1196] 3 3 1 2 3 1 nts=32 UCGGCGGAAAAGCGAAAAUGUACCGCAAAGCA A.U1050,A.C1051,A.G1184,A.G1185,A.C1186,A.G1070,A.G1071,A.A1072,A.A1073,A.A1074,A.A1075,A.G1076,A.C1170,A.G1171,A.A1172,A.A1173,A.A1174,A.A1175,A.U1176,A.G1177,A.U1178,A.A1179,A.C1180,A.C1181,A.G1182,A.C1053,A.A1054,A.A1055,A.A1056,A.G1057,A.C1196,A.A1197 nts=0 nts=1 G A.G1185 nts=5 GAAAA A.G1071,A.A1072,A.A1073,A.A1074,A.A1075 nts=11 GAAAAUGUACC A.G1171,A.A1172,A.A1173,A.A1174,A.A1175,A.U1176,A.G1177,A.U1178,A.A1179,A.C1180,A.C1181 nts=3 AAA A.A1054,A.A1055,A.A1056 nts=0 24 6-way junction: nts=37; [0,4,9,3,3,6]; linked by [#6,#7,#-5,#17,#18,#20] summary: [6] 0 4 9 3 3 6 [A.45 A.480 A.46 A.181 A.186 A.217 A.227 A.234 A.238 A.265 A.269 A.473] 2 2 1 2 4 3 nts=37 GCGCAGACGGAAGAGAAAGCGAUUAUCAGCUAAAUAC A.G45,A.C46,A.G181,A.C182,A.A183,A.G184,A.A185,A.C186,A.G217,A.G218,A.A219,A.A220,A.G221,A.A222,A.G223,A.A224,A.A225,A.A226,A.G227,A.C234,A.G235,A.A236,A.U237,A.U238,A.A265,A.U266,A.C267,A.A268,A.G269,A.C473,A.U474,A.A475,A.A476,A.A477,A.U478,A.A479,A.C480 nts=0 nts=4 CAGA A.C182,A.A183,A.G184,A.A185 nts=9 GAAGAGAAA A.G218,A.A219,A.A220,A.G221,A.A222,A.G223,A.A224,A.A225,A.A226 nts=3 GAU A.G235,A.A236,A.U237 nts=3 UCA A.U266,A.C267,A.A268 nts=6 UAAAUA A.U474,A.A475,A.A476,A.A477,A.U478,A.A479 25* 7-way junction: nts=26; [3,0,0,5,0,1,3]; linked by [#28,#-9,#30,#31,#30,#-10,#31] summary: [7] 3 0 0 5 0 1 3 [A.340 A.385 A.344 A.360 A.361 A.378 A.379 A.371 A.377 A.362 A.363 A.367 A.369 A.381] 3 1 2 3 2 1 3 nts=26 UGAAGCGCCGUAACAGCCGGAUGUAG A.U340,A.G341,A.A342,A.A343,A.G344,A.C360,A.G361,A.C378,A.C379,A.G371,A.U372,A.A373,A.A374,A.C375,A.A376,A.G377,A.C362,A.C363,A.G367,A.G368,A.A369,A.U381,A.G382,A.U383,A.A384,A.G385 nts=3 GAA A.G341,A.A342,A.A343 nts=0 nts=0 nts=5 UAACA A.U372,A.A373,A.A374,A.C375,A.A376 nts=0 nts=1 G A.G368 nts=3 GUA A.G382,A.U383,A.A384 26 7-way junction: nts=31; [4,0,2,4,3,0,4]; linked by [#53,#54,#55,#60,#62,#63,#71] summary: [7] 4 0 2 4 3 0 4 [A.864 A.1231 A.869 A.882 A.883 A.989 A.992 A.1017 A.1022 A.1033 A.1037 A.1209 A.1210 A.1226] 6 4 2 7 3 4 7 nts=31 CGAAAUAGUCAGCGAAAGCAGACGAUGGUAG A.C864,A.G865,A.A866,A.A867,A.A868,A.U869,A.A882,A.G883,A.U989,A.C990,A.A991,A.G992,A.C1017,A.G1018,A.A1019,A.A1020,A.A1021,A.G1022,A.C1033,A.A1034,A.G1035,A.A1036,A.C1037,A.G1209,A.A1210,A.U1226,A.G1227,A.G1228,A.U1229,A.A1230,A.G1231 nts=4 GAAA A.G865,A.A866,A.A867,A.A868 nts=0 nts=2 CA A.C990,A.A991 nts=4 GAAA A.G1018,A.A1019,A.A1020,A.A1021 nts=3 AGA A.A1034,A.G1035,A.A1036 nts=0 nts=4 GGUA A.G1227,A.G1228,A.U1229,A.A1230 27* 9-way junction: nts=27; [0,4,0,0,1,3,0,0,1]; linked by [#-32,#81,#83,#89,#84,#85,#88,#83,#84] summary: [9] 0 4 0 0 1 3 0 0 1 [A.1352 A.1648 A.1353 A.1377 A.1382 A.1443 A.1444 A.1642 A.1643 A.1387 A.1389 A.1420 A.1424 A.1441 A.1442 A.1383 A.1384 A.1646] 1 6 2 5 4 2 5 2 4 nts=27 UCGGUUAGCCGCGACGACAAUAUCGUA A.U1352,A.C1353,A.G1377,A.G1378,A.U1379,A.U1380,A.A1381,A.G1382,A.C1443,A.C1444,A.G1642,A.C1643,A.G1387,A.A1388,A.C1389,A.G1420,A.A1421,A.C1422,A.A1423,A.A1424,A.U1441,A.A1442,A.U1383,A.C1384,A.G1646,A.U1647,A.A1648 nts=0 nts=4 GUUA A.G1378,A.U1379,A.U1380,A.A1381 nts=0 nts=0 nts=1 A A.A1388 nts=3 ACA A.A1421,A.C1422,A.A1423 nts=0 nts=0 nts=1 U A.U1647 **************************************************************************** List of 39 non-loop single-stranded segments 1 nts=6 UAGAAA A.U9,A.A10,A.G11,A.A12,A.A13,A.A14 2 nts=1 G A.G75 3 nts=3 AUU A.A110,A.U111,A.U112 4 nts=1 U A.U301 5 nts=4 AGUA A.A418,A.G419,A.U420,A.A421 6 nts=4 GAAU A.G447,A.A448,A.A449,A.U450 7 nts=5 ACAAG A.A572,A.C573,A.A574,A.A575,A.G576 8 nts=1 A A.A578 9 nts=1 G A.G605 10 nts=8* GACGAAUU A.G921,A.A922,A.C945,A.G946,A.A947,A.A948,A.U949,A.U950 11 nts=5 UUAGA A.U1090,A.U1091,A.A1092,A.G1093,A.A1094 12 nts=8* AACGUCGA A.A1096,A.A1097,A.C1098,A.G1153,A.U1154,A.C1155,A.G1156,A.A1157 13 nts=1 A A.A1802 14 nts=1 U A.U1804 15 nts=3 ACA A.A1818,A.C1819,A.A1820 16 nts=1 G A.G1857 17 nts=12* CGCCUGCCGGUG A.C1859,A.G1860,A.C1861,A.C1862,A.U1863,A.G1864,A.C1866,A.C1867,A.G1868,A.G1869,A.U1870,A.G1871 18 nts=9* GGAGCCGAA A.G1886,A.G1887,A.A1888,A.G1889,A.C1890,A.C1911,A.G1912,A.A1913,A.A1914 19 nts=6* UAACAA A.U1927,A.A1928,A.A1929,A.C2005,A.A2006,A.A2007 20 nts=2 UA A.U2070,A.A2071 21 nts=11 AAAGACCCCGU A.A2087,A.A2088,A.A2089,A.G2090,A.A2091,A.C2092,A.C2093,A.C2094,A.C2095,A.G2096,A.U2097 22 nts=2 UU A.U2104,A.U2105 23 nts=1 U A.U2273 24 nts=14 CGCCCAAAGGUUCC A.C2310,A.G2311,A.C2312,A.C2313,A.C2314,A.A2315,A.A2316,A.A2317,A.G2318,A.G2319,A.U2320,A.U2321,A.C2322,A.C2323 25 nts=4* GGUC A.G2332,A.G2333,A.U2341,A.C2342 26 nts=9 GGAGCUUGA A.G2367,A.G2368,A.A2369,A.G2370,A.C2371,A.U2372,A.U2373,A.G2374,A.A2375 27 nts=32 GGACGAAAGUCGGGCUUAGUGAUCCGGUGGUU A.G2400,A.G2401,A.A2402,A.C2403,A.G2404,A.A2405,A.A2406,A.A2407,A.G2408,A.U2409,A.C2410,A.G2411,A.G2412,A.G2413,A.C2414,A.U2415,A.U2416,A.A2417,A.G2418,A.U2419,A.G2420,A.A2421,A.U2422,A.C2423,A.C2424,A.G2425,A.G2426,A.U2427,A.G2428,A.G2429,A.U2430,A.U2431 28 nts=20 GCCAUCGCUCAACGGAUAAA A.G2444,A.C2445,A.C2446,A.A2447,A.U2448,A.C2449,A.G2450,A.C2451,A.U2452,A.C2453,A.A2454,A.A2455,A.C2456,A.G2457,A.G2458,A.A2459,A.U2460,A.A2461,A.A2462,A.A2463 29 nts=3* CAU A.C2472,A.A2488,A.U2489 30 nts=8* CCAACGGG A.C2495,A.C2496,A.A2497,A.A2498,A.C2512,A.G2513,A.G2514,A.G2515 31 nts=13* UUUGGCACGGCUC A.U2520,A.U2521,A.U2522,A.G2523,A.G2524,A.C2525,A.A2526,A.C2536,A.G2537,A.G2538,A.C2539,A.U2540,A.C2541 32 nts=2 CA A.C2615,A.A2616 33 nts=2 GG A.G2636,A.G2637 34 nts=1 C A.C2639 35 nts=3 GCA A.G2656,A.C2657,A.A2658 36 nts=1 C A.C2925 37 nts=2 UU B.U85,B.U86 38 nts=1 A B.A114 39 nts=2* gg W.GNP501,W.GNP502 **************************************************************************** List of 4 kissing loop interactions 1 isolated-pair #-35 between hairpin loops #35 and #57 2 isolated-pair #-11 between hairpin loops #15 and #52 3 isolated-pair #-2 between hairpin loops #1 and #3 4 stem #10 between hairpin loops #1 and #3 **************************************************************************** List of 95 A-minor motifs (types I, II, or X) 1 type=X A|C-G A.A14|A.C2073,A.G2653 WC +A.C2073 H-bonds[1]: "N1-O2'(hydroxyl)[3.30]" -A.G2653 H-bonds[0]: "" 2 type=I A|G-C A.A73|A.G58,A.C69 WC +A.G58 H-bonds[2]: "N1-O2'(hydroxyl)[2.89],N3-N2(amino)[2.94]" -A.C69 H-bonds[1]: "O2'(hydroxyl)-O2(carbonyl)[2.88]" 3 type=I A|G-C A.A102|A.G85,A.C97 WC +A.G85 H-bonds[1]: "N1-O2'(hydroxyl)[3.00]" -A.C97 H-bonds[0]: "" 4 type=II A|G-C A.A125|A.G54,A.C115 WC +A.G54 H-bonds[0]: "" -A.C115 H-bonds[1]: "N3-O2'(hydroxyl)[2.92]" 5 type=I A|G-C A.A126|A.G55,A.C114 WC +A.G55 H-bonds[2]: "N1-O2'(hydroxyl)[2.75],N3-N2(amino)[3.29]" -A.C114 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.03]" 6 type=X A|C-G A.A140|A.C1446,A.G1640 WC -A.C1446 H-bonds[0]: "" +A.G1640 H-bonds[1]: "N6(amino)-O2'(hydroxyl)[2.78]" 7 type=X A|C-G A.A161|A.C2237,A.G2245 WC -A.C2237 H-bonds[1]: "N3-O2'(hydroxyl)[2.68]" +A.G2245 H-bonds[0]: "" 8 type=I A|C-G A.A162|A.C2236,A.G2246 WC -A.C2236 H-bonds[1]: "O2'(hydroxyl)-O2(carbonyl)[3.02]" +A.G2246 H-bonds[3]: "O2'(hydroxyl)-N2(amino)[3.57],N1-O2'(hydroxyl)[3.27],N3-N2(amino)[3.59]" 9 type=X A|G-C A.A183|A.G45,A.C480 WC +A.G45 H-bonds[3]: "N6(amino)-O2'(hydroxyl)[3.18],N6(amino)-N3[2.94],N1-N2(amino)[2.86]" -A.C480 H-bonds[0]: "" 10 type=II A|G-C A.A185|A.G45,A.C480 WC +A.G45 H-bonds[0]: "" -A.C480 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.76],N3-O2'(hydroxyl)[2.93]" 11 type=X A|G-C A.A226|A.G454,A.C467 WC -A.G454 H-bonds[0]: "" +A.C467 H-bonds[1]: "O3'-O2'(hydroxyl)[3.58]" 12 type=X A|A-U A.A229|A.A456,A.U465 WC +A.A456 H-bonds[0]: "" -A.U465 H-bonds[1]: "N6(amino)-O2(carbonyl)[3.37]" 13 type=X A|G-C A.A230|A.G457,A.C464 WC +A.G457 H-bonds[3]: "N6(amino)-O2'(hydroxyl)[3.09],N6(amino)-N3[2.97],N1-N2(amino)[2.81]" -A.C464 H-bonds[0]: "" 14 type=X A|G-C A.A274|A.G303,A.C415 WC +A.G303 H-bonds[0]: "" -A.C415 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.81],N3-O2'(hydroxyl)[3.26]" 15 type=X A|A-U A.A325|A.A318,A.U402 WC +A.A318 H-bonds[0]: "" -A.U402 H-bonds[1]: "N1-O2'(hydroxyl)[3.30]" 16 type=X A|G-C A.A326|A.G319,A.C401 WC +A.G319 H-bonds[3]: "N6(amino)-O2'(hydroxyl)[2.55],N6(amino)-N3[3.11],N1-N2(amino)[2.68]" -A.C401 H-bonds[0]: "" 17 type=I A|C-G A.A343|A.C362,A.G377 WC -A.C362 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.62],O2'(hydroxyl)-O2(carbonyl)[2.81]" +A.G377 H-bonds[0]: "" 18 type=II A|C-G A.A390|A.C79,A.G106 WC -A.C79 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.97],N3-O2'(hydroxyl)[3.13]" +A.G106 H-bonds[1]: "N1-N2(amino)[3.48]" 19 type=X A|C-G A.A412|A.C306,A.G410 WC -A.C306 H-bonds[1]: "N6(amino)-O2(carbonyl)[2.80]" +A.G410 H-bonds[0]: "" 20 type=X A|C-A A.A438|A.C430,A.A437 -- -A.C430 H-bonds[1]: "N6(amino)-O2(carbonyl)[3.14]" +A.A437 H-bonds[0]: "" 21 type=X A|C-G A.A479|A.C186,A.G217 WC -A.C186 H-bonds[1]: "N3-O2'(hydroxyl)[2.51]" +A.G217 H-bonds[0]: "" 22 type=I A|C-G A.A490|A.C1241,A.G1285 WC -A.C1241 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.08]" +A.G1285 H-bonds[2]: "N1-O2'(hydroxyl)[3.14],N3-N2(amino)[3.22]" 23 type=II A|G-C A.A496|A.G35,A.C492 WC +A.G35 H-bonds[0]: "" -A.C492 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.19],N3-O2'(hydroxyl)[2.86]" 24 type=I A|G-C A.A513|A.G729,A.C842 WC -A.G729 H-bonds[0]: "" +A.C842 H-bonds[1]: "N1-O2'(hydroxyl)[3.05]" 25 type=X A|C-G A.A530|A.C531,A.G542 WC +A.C531 H-bonds[1]: "OP2-N4(amino)[3.10]" -A.G542 H-bonds[0]: "" 26 type=X A|C-G A.A560|A.C625,A.G1299 WC -A.C625 H-bonds[1]: "N3-O2'(hydroxyl)[2.89]" +A.G1299 H-bonds[0]: "" 27 type=I A|C-G A.A561|A.C624,A.G1300 WC -A.C624 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.21]" +A.G1300 H-bonds[0]: "" 28 type=I A|C-G A.A572|A.C2072,A.G2654 WC -A.C2072 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.54],O2'(hydroxyl)-O2(carbonyl)[2.86]" +A.G2654 H-bonds[1]: "N1-O2'(hydroxyl)[3.46]" 29 type=X A|A-U A.A578|A.A2049,A.U2063 WC -A.A2049 H-bonds[1]: "N6(amino)-N3[3.43]" +A.U2063 H-bonds[0]: "" 30 type=I A|C-G A.A630|A.C718,A.G856 WC -A.C718 H-bonds[1]: "O2'(hydroxyl)-O2(carbonyl)[3.30]" +A.G856 H-bonds[2]: "N1-O2'(hydroxyl)[2.41],N3-N2(amino)[3.30]" 31 type=II A|C-G A.A652|A.C241,A.G262 WC -A.C241 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.93],N3-O2'(hydroxyl)[3.36]" +A.G262 H-bonds[0]: "" 32 type=I A|C-G A.A653|A.C240,A.G263 WC -A.C240 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.93]" +A.G263 H-bonds[0]: "" 33 type=X A|C-G A.A659|A.C39,A.G487 WC -A.C39 H-bonds[1]: "N1-O2'(hydroxyl)[3.18]" +A.G487 H-bonds[0]: "" 34 type=I A|G-C A.A723|A.G2098,A.C2471 WC +A.G2098 H-bonds[1]: "N3-N2(amino)[3.44]" -A.C2471 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.46],O2'(hydroxyl)-O2(carbonyl)[3.07]" 35 type=X A|C-G A.A796|A.C791,A.G800 WC +A.C791 H-bonds[0]: "" -A.G800 H-bonds[2]: "N6(amino)-N3[2.87],N1-O2'(hydroxyl)[2.73]" 36 type=I A|G-C A.A828|A.G1805,A.C1817 WC +A.G1805 H-bonds[2]: "N1-O2'(hydroxyl)[3.01],N3-N2(amino)[3.16]" -A.C1817 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.60],O2'(hydroxyl)-O2(carbonyl)[3.14]" 37 type=I A|C-G A.A866|A.C884,A.G988 WC -A.C884 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.48]" +A.G988 H-bonds[0]: "" 38 type=X A|G-C A.A913|A.G911,A.C959 WC +A.G911 H-bonds[1]: "N1-N2(amino)[2.54]" -A.C959 H-bonds[0]: "" 39 type=X A|G-U A.A913|A.G911,A.U960 -- +A.G911 H-bonds[1]: "N1-N2(amino)[2.54]" -A.U960 H-bonds[1]: "N1*O2(carbonyl)[2.96]" 40 type=I A|G-C A.A1027|A.G2056,A.C2065 WC +A.G2056 H-bonds[1]: "N1-O2'(hydroxyl)[3.53]" -A.C2065 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.28]" 41 type=X A|G-C A.A1029|A.G992,A.C1017 WC +A.G992 H-bonds[0]: "" -A.C1017 H-bonds[1]: "N3-O2'(hydroxyl)[3.26]" 42 type=X A|G-C A.A1046|A.G1022,A.C1033 WC +A.G1022 H-bonds[0]: "" -A.C1033 H-bonds[1]: "N3-O2'(hydroxyl)[2.68]" 43 type=I A|G-C A.A1047|A.G1023,A.C1032 WC +A.G1023 H-bonds[2]: "N1-O2'(hydroxyl)[3.18],N3-N2(amino)[3.42]" -A.C1032 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.47]" 44 type=X A|G-C A.A1055|A.G1048,A.C1199 WC +A.G1048 H-bonds[0]: "" -A.C1199 H-bonds[1]: "N3-O2'(hydroxyl)[2.67]" 45 type=I A|G-C A.A1056|A.G1049,A.C1198 WC +A.G1049 H-bonds[2]: "N1-O2'(hydroxyl)[2.74],N3-N2(amino)[3.13]" -A.C1198 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.55],O2'(hydroxyl)-O2(carbonyl)[3.28]" 46 type=X A|G-C A.A1075|A.G1076,A.C1170 WC +A.G1076 H-bonds[1]: "O2'(hydroxyl)-OP1[2.69]" -A.C1170 H-bonds[0]: "" 47 type=X A|G-C A.A1174|A.G2545,A.C2597 WC -A.G2545 H-bonds[1]: "N3-O2'(hydroxyl)[2.65]" +A.C2597 H-bonds[0]: "" 48 type=I A|C-G A.A1175|A.C2544,A.G2598 WC -A.C2544 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.51],O2'(hydroxyl)-O2(carbonyl)[3.21]" +A.G2598 H-bonds[2]: "N6(amino)-O2'(hydroxyl)[3.17],N1-O2'(hydroxyl)[2.68]" 49 type=X A|G-C A.A1254|A.G30,A.C556 WC -A.G30 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.19],N3-O2'(hydroxyl)[3.26]" +A.C556 H-bonds[0]: "" 50 type=X A|C-G A.A1260|A.C588,A.G595 WC +A.C588 H-bonds[0]: "" -A.G595 H-bonds[1]: "N3-O2'(hydroxyl)[2.83]" 51 type=I A|C-G A.A1266|A.C859,A.G1236 WC -A.C859 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.45],O2'(hydroxyl)-O2(carbonyl)[3.30]" +A.G1236 H-bonds[0]: "" 52 type=X A|C-G A.A1293|A.C608,A.G621 WC +A.C608 H-bonds[1]: "N1-O2'(hydroxyl)[3.15]" -A.G621 H-bonds[0]: "" 53 type=I A|C-G A.A1294|A.C719,A.G855 WC +A.C719 H-bonds[0]: "" -A.G855 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.89]" 54 type=I A|C-G A.A1314|A.C1334,A.G1690 WC +A.C1334 H-bonds[1]: "N1-O2'(hydroxyl)[2.83]" -A.G1690 H-bonds[1]: "O3'-O2'(hydroxyl)[3.40]" 55 type=X A|G-C A.A1361|A.G1358,A.C1372 WC +A.G1358 H-bonds[0]: "" -A.C1372 H-bonds[2]: "N6(amino)-O2(carbonyl)[3.30],N1-O2'(hydroxyl)[3.16]" 56 type=X A|G-C A.A1361|A.G1359,A.C1372 -- +A.G1359 H-bonds[0]: "" -A.C1372 H-bonds[2]: "N6(amino)-O2(carbonyl)[3.30],N1-O2'(hydroxyl)[3.16]" 57 type=X A|A-U A.A1392|A.A740,A.U816 WC -A.A740 H-bonds[1]: "N3-O2'(hydroxyl)[2.77]" +A.U816 H-bonds[0]: "" 58 type=I A|C-G A.A1393|A.C739,A.G817 WC -A.C739 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.04],O2'(hydroxyl)-O2(carbonyl)[3.29]" +A.G817 H-bonds[1]: "N3-N2(amino)[3.59]" 59 type=I A|G-C A.A1423|A.G1382,A.C1443 WC +A.G1382 H-bonds[1]: "N1-O2'(hydroxyl)[3.10]" -A.C1443 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.02],O2'(hydroxyl)-O2(carbonyl)[3.24]" 60 type=I A|C-G A.A1432|A.C1353,A.G1377 WC -A.C1353 H-bonds[0]: "" +A.G1377 H-bonds[1]: "N1-O2'(hydroxyl)[2.91]" 61 type=I A|C-G A.A1461|A.C1455,A.G1632 WC -A.C1455 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.13]" +A.G1632 H-bonds[0]: "" 62 type=II A|G-C A.A1542|A.G1467,A.C1625 WC +A.G1467 H-bonds[0]: "" -A.C1625 H-bonds[2]: "O2'(hydroxyl)-O3'[3.13],N3-O2'(hydroxyl)[2.74]" 63 type=X A|C-G A.A1592|A.C1493,A.G1510 WC -A.C1493 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.12],N3-O2'(hydroxyl)[2.32]" +A.G1510 H-bonds[0]: "" 64 type=I A|G-C A.A1593|A.G1492,A.C1511 WC -A.G1492 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.31]" +A.C1511 H-bonds[1]: "N1-O2'(hydroxyl)[3.45]" 65 type=X A|C-G A.A1617|A.C1390,A.G1419 WC -A.C1390 H-bonds[0]: "" +A.G1419 H-bonds[1]: "N6(amino)-O2'(hydroxyl)[3.45]" 66 type=X A|C-G A.A1618|A.C1390,A.G1419 WC -A.C1390 H-bonds[0]: "" +A.G1419 H-bonds[1]: "N1-N2(amino)[3.02]" 67 type=II A|G-C A.A1677|A.G747,A.C779 WC -A.G747 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.41]" +A.C779 H-bonds[0]: "" 68 type=X A|G-C A.A1721|A.G1719,A.C2019 WC +A.G1719 H-bonds[1]: "N6(amino)-N3[3.52]" -A.C2019 H-bonds[0]: "" 69 type=X A|G-C A.A1722|A.G1719,A.C2019 WC +A.G1719 H-bonds[1]: "N1-N2(amino)[3.12]" -A.C2019 H-bonds[0]: "" 70 type=X A|G-C A.A1784|A.G2723,A.C2744 WC +A.G2723 H-bonds[2]: "N6(amino)-O2'(hydroxyl)[3.54],N1-N2(amino)[3.52]" -A.C2744 H-bonds[0]: "" 71 type=II A|A-U A.A1789|A.A1675,A.U1681 WC +A.A1675 H-bonds[0]: "" -A.U1681 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.59],N3-O2'(hydroxyl)[3.39]" 72 type=X A|U-A A.A1831|A.U1827,A.A1850 WC -A.U1827 H-bonds[1]: "N3-O2'(hydroxyl)[2.55]" +A.A1850 H-bonds[0]: "" 73 type=I A|C-G A.A1832|A.C1826,A.G1851 WC -A.C1826 H-bonds[0]: "" +A.G1851 H-bonds[1]: "N1-O2'(hydroxyl)[2.64]" 74 type=X A|C-G A.A1838|A.C1401,A.G1408 WC -A.C1401 H-bonds[0]: "" +A.G1408 H-bonds[1]: "N6(amino)-O2'(hydroxyl)[3.46]" 75 type=I A|C-G A.A1839|A.C1401,A.G1408 WC -A.C1401 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.09]" +A.G1408 H-bonds[1]: "N3-N2(amino)[3.40]" 76 type=X A|G-U A.A1883|A.G1884,A.U1916 Wobble +A.G1884 H-bonds[1]: "O2'(hydroxyl)-OP1[3.08]" -A.U1916 H-bonds[0]: "" 77 type=X A|C-G A.A2176|A.C2172,A.G2177 WC -A.C2172 H-bonds[0]: "" +A.G2177 H-bonds[1]: "N6(amino)-N3[2.67]" 78 type=I A|G-U A.A2303|A.G1000,A.U1009 Wobble +A.G1000 H-bonds[1]: "N3-N2(amino)[3.55]" -A.U1009 H-bonds[0]: "" 79 type=X A|C-G A.A2560|A.C2687,A.G2692 WC -A.C2687 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[3.03],N3-O2'(hydroxyl)[2.95]" +A.G2692 H-bonds[1]: "N1-N2(amino)[3.34]" 80 type=II A|C-G A.A2593|A.C2550,A.G2573 WC -A.C2550 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.12]" +A.G2573 H-bonds[0]: "" 81 type=X A|C-G A.A2594|A.C2549,A.G2574 WC -A.C2549 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.45]" +A.G2574 H-bonds[1]: "N3-N2(amino)[2.88]" 82 type=I A|U-A A.A2627|A.U2103,A.A2464 WC -A.U2103 H-bonds[2]: "O4'-O2'(hydroxyl)[2.64],O2'(hydroxyl)-O2(carbonyl)[2.33]" +A.A2464 H-bonds[2]: "N1-O2'(hydroxyl)[3.02],N3*N3[3.31]" 83 type=X A|G-C A.A2769|A.G2552,A.C2569 WC +A.G2552 H-bonds[0]: "" -A.C2569 H-bonds[1]: "N3-O2'(hydroxyl)[2.53]" 84 type=I A|G-C A.A2770|A.G2553,A.C2568 WC +A.G2553 H-bonds[0]: "" -A.C2568 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[2.96]" 85 type=X A|G-C A.A2834|A.G2659,A.C2817 WC +A.G2659 H-bonds[0]: "" -A.C2817 H-bonds[1]: "N3-O2'(hydroxyl)[2.57]" 86 type=I A|G-C A.A2835|A.G2660,A.C2816 WC +A.G2660 H-bonds[1]: "N1-O2'(hydroxyl)[3.31]" -A.C2816 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.49]" 87 type=X A|C-G A.A2848|A.C2076,A.G2650 WC -A.C2076 H-bonds[2]: "N6(amino)-O2(carbonyl)[3.57],N1-O2'(hydroxyl)[3.10]" +A.G2650 H-bonds[0]: "" 88 type=I A|C-G A.A2885|A.C1753,A.G1779 WC -A.C1753 H-bonds[1]: "O2'(hydroxyl)-O2'(hydroxyl)[3.05]" +A.G1779 H-bonds[2]: "N1-O2'(hydroxyl)[3.07],N3-N2(amino)[3.07]" 89 type=I A|C-G A.A2908|A.C2841,A.G2855 WC -A.C2841 H-bonds[2]: "O2'(hydroxyl)-O2'(hydroxyl)[2.89],O2'(hydroxyl)-O2(carbonyl)[2.17]" +A.G2855 H-bonds[2]: "O2'(hydroxyl)-N2(amino)[3.36],N3-N2(amino)[3.51]" 90 type=X A|C-G B.A51|B.C29,B.G49 WC -B.C29 H-bonds[3]: "N6(amino)-O2'(hydroxyl)[2.74],N6(amino)-O2(carbonyl)[2.01],N1*O3'[2.99]" +B.G49 H-bonds[1]: "N6(amino)*N2(amino)[3.04]" 91 type=X A|A-U B.A55|B.A27,B.U53 WC -B.A27 H-bonds[0]: "" +B.U53 H-bonds[2]: "N7-O2'(hydroxyl)[2.27],N6(amino)-O2(carbonyl)[2.61]" 92 type=X A|C-G B.A55|B.C28,B.G52 -- -B.C28 H-bonds[2]: "N6(amino)-O2(carbonyl)[2.35],N1-O2'(hydroxyl)[2.76]" +B.G52 H-bonds[0]: "" 93 type=X A|C-U B.A55|B.C28,B.U53 -- -B.C28 H-bonds[2]: "N6(amino)-O2(carbonyl)[2.35],N1-O2'(hydroxyl)[2.76]" +B.U53 H-bonds[2]: "N7-O2'(hydroxyl)[2.27],N6(amino)-O2(carbonyl)[2.61]" 94 type=X A|C-U B.A56|B.C26,B.U54 -- -B.C26 H-bonds[0]: "" +B.U54 H-bonds[2]: "OP2*O3'[3.06],N6(amino)-O2(carbonyl)[2.83]" 95 type=X A|A-U B.A56|B.A27,B.U53 WC -B.A27 H-bonds[2]: "N6(amino)-N3[3.12],N1-O2'(hydroxyl)[3.36]" +B.U53 H-bonds[0]: "" **************************************************************************** List of 28 ribose zippers 1 nts=4 CCAA A.C114,A.C115,A.A125,A.A126 2 nts=4 AUCC A.A140,A.U141,A.C1446,A.C1447 3 nts=4 ACAC A.A185,A.C186,A.A479,A.C480 4 nts=4 AACC A.A193,A.A194,A.C725,A.C726 5 nts=4 AGAU A.A222,A.G223,A.A236,A.U237 6 nts=4 CCAA A.C240,A.C241,A.A652,A.A653 7 nts=4 AUAA A.A265,A.U266,A.A476,A.A477 8 nts=4 AACC A.A560,A.A561,A.C624,A.C625 9 nts=4 AACC A.A722,A.A723,A.C2471,A.C2472 10 nts=4 CAAA A.C739,A.A740,A.A1392,A.A1393 11 nts=4 CUAA A.C859,A.U860,A.A1265,A.A1266 12 nts=4 GACC A.G865,A.A866,A.C884,A.C885 13 nts=4 AGAG A.A908,A.G909,B.A76,B.G77 14 nts=4 AGAG A.A987,A.G988,A.A1230,A.G1231 15 nts=4 AACA A.A1026,A.A1027,A.C2065,A.A2066 16 nts=4 CCAA A.C1032,A.C1033,A.A1046,A.A1047 17 nts=4 CCAA A.C1389,A.C1390,A.A1619,A.A1620 18 nts=4 CCAA A.C1401,A.C1402,A.A1838,A.A1839 19 nts=4 CAGA A.C1455,A.A1456,A.G1460,A.A1461 20 nts=4 GCAA A.G1492,A.C1493,A.A1592,A.A1593 21 nts=4 AACU A.A1541,A.A1542,A.C1625,A.U1626 22 nts=4 AUUA A.A1581,A.U1582,A.U1582,A.A1583 23 nts=4 CUGA A.C1753,A.U1754,A.G2884,A.A2885 24 nts=4 CUGA A.C2102,A.U2103,A.G2626,A.A2627 25 nts=4 ACAA A.A2106,A.C2107,A.A2462,A.A2463 26 nts=4 GUUA A.G2139,A.U2140,A.U2147,A.A2148 27 nts=4 CCAA A.C2549,A.C2550,A.A2593,A.A2594 28 nts=4 CCAA A.C2816,A.C2817,A.A2834,A.A2835 **************************************************************************** List of 5 kink turns 1 Normal k-turn; iloop#60; between stems [#90,#91]; bending-angle=44 C#90[CG A.C1455,A.G1632] [GA A.G1460,A.A1631] NC#91[GC A.G1462,A.C1629] strand1 nts=14; CUCACCAUUUGAGC A.C1450,A.U1451,A.C1452,A.A1453,A.C1454,A.C1455,A.A1456,A.U1457,A.U1458,A.U1459,A.G1460,A.A1461,A.G1462,A.C1463 strand2 nts=10; GCGAGGUGAG A.G1628,A.C1629,A.G1630,A.A1631,A.G1632,A.G1633,A.U1634,A.G1635,A.A1636,A.G1637 2 Normal k-turn; iloop#63; between stems [#12,#11]; bending-angle=37 C#12[CG A.C97,A.G85] [GA A.G101,A.A84] NC#11[CG A.C104,A.G81] strand1 nts=15; AGCUUUGAUCCGGAG A.A95,A.G96,A.C97,A.U98,A.U99,A.U100,A.G101,A.A102,A.U103,A.C104,A.C105,A.G106,A.G107,A.A108,A.G109 strand2 nts=12; CUUCGGGGAGCU A.C76,A.U77,A.U78,A.C79,A.G80,A.G81,A.G82,A.G83,A.A84,A.G85,A.C86,A.U87 3 Normal k-turn; iloop#65; between stems [#73,#74]; bending-angle=50 C#73[CG A.C1248,A.G1278] [GA A.G1252,A.A1277] NC#74[GU A.G1255,A.U1274] strand1 nts=13; GCUGUGAAGCCAG A.G1247,A.C1248,A.U1249,A.G1250,A.U1251,A.G1252,A.A1253,A.A1254,A.G1255,A.C1256,A.C1257,A.A1258,A.G1259 strand2 nts=10; CUGGUGGAGC A.C1270,A.U1271,A.G1272,A.G1273,A.U1274,A.G1275,A.G1276,A.A1277,A.G1278,A.C1279 4 Undecided case; iloop#57; between stems [#158,#159]; bending-angle=49 C#158[UG A.U2872,A.G2894] [GA A.G2873,A.A2893] NC#159[GU A.G2877,A.U2890] strand1 nts=12; GGUGGAAGUGUG A.G2870,A.G2871,A.U2872,A.G2873,A.G2874,A.A2875,A.A2876,A.G2877,A.U2878,A.G2879,A.U2880,A.G2881 strand2 nts=11; CACAUGGAGCU A.C2886,A.A2887,A.C2888,A.A2889,A.U2890,A.G2891,A.G2892,A.A2893,A.G2894,A.C2895,A.U2896 5 Undecided case; iloop#76; between stems [#114,#113]; bending-angle=70 C#114[CG A.C1842,A.G1833] [GA A.G1843,A.A1832] NC#113[AU A.A1850,A.U1827] strand1 nts=17; GGCGAAGUAUAGGGGCU A.G1840,A.G1841,A.C1842,A.G1843,A.A1844,A.A1845,A.G1846,A.U1847,A.A1848,A.U1849,A.A1850,A.G1851,A.G1852,A.G1853,A.G1854,A.C1855,A.U1856 strand2 nts=15; GGUCUCUGCGAAGCC A.G1821,A.G1822,A.U1823,A.C1824,A.U1825,A.C1826,A.U1827,A.G1828,A.C1829,A.G1830,A.A1831,A.A1832,A.G1833,A.C1834,A.C1835 **************************************************************************** List of 406 splayed-apart dinucleotides 1 A.G45 A.C46 angle=117 distance=16.5 ratio=0.85 2 A.A49 A.U50 angle=130 distance=17.4 ratio=0.91 3 A.U50 A.G51 angle=116 distance=17.2 ratio=0.85 4 A.A71 A.U72 angle=117 distance=16.5 ratio=0.85 5 A.U72 A.A73 angle=120 distance=16.4 ratio=0.87 6 A.A73 A.U74 angle=95 distance=13.7 ratio=0.74 7 A.U74 A.G75 angle=94 distance=14.8 ratio=0.73 8 A.U87 A.G88 angle=148 distance=17.4 ratio=0.96 9 A.U99 A.U100 angle=112 distance=17.5 ratio=0.83 10 A.U100 A.G101 angle=134 distance=17.5 ratio=0.92 11 A.U112 A.U113 angle=97 distance=13.9 ratio=0.75 12 A.U119 A.G120 angle=146 distance=17.4 ratio=0.96 13 A.G123 A.A124 angle=117 distance=15.7 ratio=0.85 14 A.A124 A.A125 angle=146 distance=18.8 ratio=0.96 15 A.A126 A.C127 angle=92 distance=14.9 ratio=0.72 16 A.U149 A.A150 angle=125 distance=16.3 ratio=0.89 17 A.G175 A.A176 angle=137 distance=18.6 ratio=0.93 18 A.A176 A.G177 angle=152 distance=18.3 ratio=0.97 19 A.A183 A.G184 angle=139 distance=18.3 ratio=0.94 20 A.G184 A.A185 angle=140 distance=18.3 ratio=0.94 21 A.A198 A.A199 angle=110 distance=17.3 ratio=0.82 22 A.A199 A.A200 angle=99 distance=14.6 ratio=0.76 23 A.A200 A.C201 angle=142 distance=16.2 ratio=0.95 24 A.A202 A.U203 angle=133 distance=13.5 ratio=0.92 25 A.U203 A.C204 angle=114 distance=14.4 ratio=0.84 26 A.A225 A.A226 angle=133 distance=19.2 ratio=0.92 27 A.A226 A.G227 angle=144 distance=18.2 ratio=0.95 28 A.G235 A.A236 angle=152 distance=18.8 ratio=0.97 29 A.G251 A.C252 angle=106 distance=13.8 ratio=0.81 30 A.C267 A.A268 angle=128 distance=14.5 ratio=0.90 31 A.U301 A.A302 angle=89 distance=13.0 ratio=0.71 32 A.U320 A.U321 angle=148 distance=18.8 ratio=0.96 33 A.C323 A.A324 angle=96 distance=13.2 ratio=0.75 34 A.A343 A.G344 angle=90 distance=14.5 ratio=0.70 35 A.G344 A.A345 angle=114 distance=17.3 ratio=0.84 36 A.A345 A.G346 angle=139 distance=16.9 ratio=0.94 37 A.G351 A.G352 angle=92 distance=12.8 ratio=0.72 38 A.A355 A.G356 angle=93 distance=13.9 ratio=0.73 39 A.A364 A.U365 angle=152 distance=18.8 ratio=0.97 40 A.G367 A.G368 angle=105 distance=17.0 ratio=0.79 41 A.U372 A.A373 angle=135 distance=16.3 ratio=0.92 42 A.C375 A.A376 angle=96 distance=15.3 ratio=0.74 43 A.A376 A.G377 angle=98 distance=14.4 ratio=0.76 44 A.C378 A.C379 angle=115 distance=15.5 ratio=0.84 45 A.C404 A.U405 angle=103 distance=16.0 ratio=0.79 46 A.U416 A.G417 angle=95 distance=13.8 ratio=0.74 47 A.G417 A.A418 angle=145 distance=20.1 ratio=0.95 48 A.C432 A.G433 angle=115 distance=15.9 ratio=0.84 49 A.G433 A.U434 angle=136 distance=17.9 ratio=0.93 50 A.C451 A.C452 angle=142 distance=18.0 ratio=0.95 51 A.C452 A.G453 angle=140 distance=17.3 ratio=0.94 52 A.G457 A.G458 angle=153 distance=19.5 ratio=0.97 53 A.G458 A.A459 angle=108 distance=15.9 ratio=0.81 54 A.A470 A.G471 angle=105 distance=15.8 ratio=0.79 55 A.U474 A.A475 angle=97 distance=12.0 ratio=0.75 56 A.G489 A.A490 angle=155 distance=19.0 ratio=0.98 57 A.A490 A.C491 angle=156 distance=20.3 ratio=0.98 58 A.A494 A.U495 angle=169 distance=19.1 ratio=1.00 59 A.U495 A.A496 angle=123 distance=16.7 ratio=0.88 60 A.A500 A.A501 angle=121 distance=16.7 ratio=0.87 61 A.C502 A.C503 angle=138 distance=18.5 ratio=0.93 62 A.C503 A.A504 angle=177 distance=19.4 ratio=1.00 63 A.A519 A.G520 angle=113 distance=15.3 ratio=0.83 64 A.G521 A.U522 angle=153 distance=19.3 ratio=0.97 65 A.C529 A.A530 angle=105 distance=14.5 ratio=0.79 66 A.A549 A.G550 angle=152 distance=19.3 ratio=0.97 67 A.G550 A.A551 angle=145 distance=19.4 ratio=0.95 68 A.A553 A.U554 angle=143 distance=16.9 ratio=0.95 69 A.U554 A.C555 angle=99 distance=15.7 ratio=0.76 70 A.C555 A.C556 angle=142 distance=18.7 ratio=0.95 71 A.A572 A.C573 angle=134 distance=19.1 ratio=0.92 72 A.G576 A.U577 angle=102 distance=16.5 ratio=0.78 73 A.U590 A.U591 angle=116 distance=16.1 ratio=0.85 74 A.U591 A.A592 angle=135 distance=17.1 ratio=0.93 75 A.A593 A.C594 angle=106 distance=14.1 ratio=0.80 76 A.C594 A.G595 angle=134 distance=19.6 ratio=0.92 77 A.G605 A.U606 angle=111 distance=15.7 ratio=0.82 78 A.U606 A.G607 angle=100 distance=15.7 ratio=0.77 79 A.A618 A.A619 angle=133 distance=18.7 ratio=0.92 80 A.A622 A.A623 angle=131 distance=17.2 ratio=0.91 81 A.G631 A.U632 angle=86 distance=12.8 ratio=0.68 82 A.G657 A.A658 angle=86 distance=10.8 ratio=0.68 83 A.A658 A.A659 angle=127 distance=17.1 ratio=0.89 84 A.A659 A.G660 angle=128 distance=17.3 ratio=0.90 85 A.C672 A.A673 angle=112 distance=15.3 ratio=0.83 86 A.G688 A.A689 angle=100 distance=12.8 ratio=0.78 87 A.A690 A.U691 angle=86 distance=12.6 ratio=0.68 88 A.U691 A.A692 angle=99 distance=14.9 ratio=0.77 89 A.U700 A.G701 angle=134 distance=16.5 ratio=0.92 90 A.A717 A.C718 angle=131 distance=18.2 ratio=0.91 91 A.A732 A.U733 angle=127 distance=19.1 ratio=0.90 92 A.U733 A.C734 angle=106 distance=15.1 ratio=0.80 93 A.C745 A.A746 angle=128 distance=16.9 ratio=0.90 94 A.U761 A.A762 angle=106 distance=13.8 ratio=0.80 95 A.G775 A.G776 angle=135 distance=17.1 ratio=0.93 96 A.G776 A.C777 angle=144 distance=18.1 ratio=0.95 97 A.U793 A.U794 angle=148 distance=18.2 ratio=0.96 98 A.U794 A.G795 angle=133 distance=17.4 ratio=0.92 99 A.A797 A.A798 angle=129 distance=16.3 ratio=0.90 100 A.A798 A.A799 angle=107 distance=14.4 ratio=0.80 101 A.A808 A.U809 angle=129 distance=18.1 ratio=0.90 102 A.G810 A.A811 angle=129 distance=18.9 ratio=0.90 103 A.A811 A.G812 angle=161 distance=19.4 ratio=0.99 104 A.G822 A.G823 angle=169 distance=17.1 ratio=1.00 105 A.G823 A.G824 angle=119 distance=15.8 ratio=0.86 106 A.G827 A.A828 angle=155 distance=19.0 ratio=0.98 107 A.A828 A.A829 angle=129 distance=16.8 ratio=0.90 108 A.A830 A.U831 angle=100 distance=14.0 ratio=0.77 109 A.U831 A.G832 angle=87 distance=13.9 ratio=0.69 110 A.C834 A.A835 angle=137 distance=17.3 ratio=0.93 111 A.A835 A.A836 angle=107 distance=15.4 ratio=0.81 112 A.A836 A.U837 angle=94 distance=14.9 ratio=0.73 113 A.C838 A.G839 angle=122 distance=16.7 ratio=0.87 114 A.A840 A.A841 angle=131 distance=17.6 ratio=0.91 115 A.A847 A.G848 angle=121 distance=17.3 ratio=0.87 116 A.G848 A.A849 angle=153 distance=18.5 ratio=0.97 117 A.U858 A.C859 angle=89 distance=15.0 ratio=0.70 118 A.A868 A.U869 angle=102 distance=15.8 ratio=0.77 119 A.U873 A.U874 angle=151 distance=20.5 ratio=0.97 120 A.A876 A.G877 angle=128 distance=19.0 ratio=0.90 121 A.G877 A.G878 angle=154 distance=18.0 ratio=0.97 122 A.A956 A.A957 angle=144 distance=20.5 ratio=0.95 123 A.A958 A.C959 angle=122 distance=16.6 ratio=0.88 124 A.C990 A.A991 angle=153 distance=18.5 ratio=0.97 125 A.A991 A.G992 angle=121 distance=18.7 ratio=0.87 126 A.G1002 A.A1003 angle=105 distance=11.7 ratio=0.80 127 A.A1003 A.U1004 angle=126 distance=18.2 ratio=0.89 128 A.U1004 A.A1005 angle=137 distance=19.3 ratio=0.93 129 A.A1006 A.G1007 angle=126 distance=17.9 ratio=0.89 130 A.G1007 A.A1008 angle=134 distance=18.7 ratio=0.92 131 A.A1025 A.A1026 angle=120 distance=14.6 ratio=0.87 132 A.C1028 A.A1029 angle=139 distance=18.9 ratio=0.94 133 A.G1030 A.C1031 angle=88 distance=13.2 ratio=0.69 134 A.A1036 A.C1037 angle=154 distance=18.1 ratio=0.98 135 A.C1040 A.C1041 angle=136 distance=18.2 ratio=0.93 136 A.C1041 A.A1042 angle=151 distance=19.3 ratio=0.97 137 A.U1050 A.C1051 angle=162 distance=18.3 ratio=0.99 138 A.G1057 A.U1058 angle=113 distance=18.3 ratio=0.83 139 A.U1058 A.A1059 angle=129 distance=18.1 ratio=0.90 140 A.G1071 A.A1072 angle=148 distance=18.7 ratio=0.96 141 A.A1078 A.U1079 angle=94 distance=14.1 ratio=0.73 142 A.U1079 A.G1080 angle=114 distance=14.3 ratio=0.84 143 A.U1090 A.U1091 angle=99 distance=15.1 ratio=0.77 144 A.U1091 A.A1092 angle=160 distance=17.6 ratio=0.99 145 A.A1092 A.G1093 angle=99 distance=14.5 ratio=0.76 146 A.A1172 A.A1173 angle=111 distance=16.8 ratio=0.83 147 A.A1175 A.U1176 angle=148 distance=18.5 ratio=0.96 148 A.A1179 A.C1180 angle=159 distance=17.6 ratio=0.98 149 A.C1180 A.C1181 angle=157 distance=20.4 ratio=0.98 150 A.A1188 A.A1189 angle=87 distance=13.1 ratio=0.69 151 A.A1189 A.A1190 angle=118 distance=16.6 ratio=0.86 152 A.A1201 A.A1202 angle=104 distance=14.6 ratio=0.79 153 A.A1202 A.G1203 angle=120 distance=16.0 ratio=0.87 154 A.C1219 A.G1220 angle=95 distance=12.5 ratio=0.74 155 A.U1226 A.G1227 angle=169 distance=19.0 ratio=1.00 156 A.G1250 A.U1251 angle=136 distance=18.0 ratio=0.93 157 A.U1251 A.G1252 angle=109 distance=15.7 ratio=0.81 158 A.G1259 A.A1260 angle=119 distance=15.1 ratio=0.86 159 A.A1260 A.C1261 angle=133 distance=18.0 ratio=0.92 160 A.G1263 A.G1264 angle=103 distance=13.7 ratio=0.78 161 A.A1287 A.G1288 angle=115 distance=16.2 ratio=0.84 162 A.G1288 A.U1289 angle=132 distance=18.7 ratio=0.91 163 A.G1290 A.A1291 angle=114 distance=15.7 ratio=0.84 164 A.A1291 A.G1292 angle=129 distance=17.2 ratio=0.90 165 A.A1293 A.A1294 angle=111 distance=16.3 ratio=0.83 166 A.A1294 A.U1295 angle=150 distance=17.6 ratio=0.97 167 A.U1295 A.G1296 angle=153 distance=19.0 ratio=0.97 168 A.C1310 A.G1311 angle=111 distance=16.0 ratio=0.82 169 A.G1311 A.A1312 angle=100 distance=15.1 ratio=0.77 170 A.A1313 A.A1314 angle=122 distance=16.9 ratio=0.88 171 A.G1322 A.A1323 angle=88 distance=12.3 ratio=0.69 172 A.A1325 A.A1326 angle=101 distance=15.1 ratio=0.77 173 A.G1338 A.A1339 angle=147 distance=19.6 ratio=0.96 174 A.A1340 A.U1341 angle=99 distance=14.6 ratio=0.76 175 A.U1341 A.G1342 angle=122 distance=16.6 ratio=0.88 176 A.G1363 A.C1364 angle=136 distance=19.9 ratio=0.93 177 A.C1364 A.U1365 angle=116 distance=16.3 ratio=0.85 178 A.G1367 A.U1368 angle=108 distance=12.5 ratio=0.82 179 A.G1371 A.C1372 angle=98 distance=14.4 ratio=0.75 180 A.U1379 A.U1380 angle=133 distance=17.2 ratio=0.92 181 A.U1380 A.A1381 angle=98 distance=14.2 ratio=0.76 182 A.A1381 A.G1382 angle=108 distance=15.2 ratio=0.81 183 A.U1383 A.C1384 angle=100 distance=15.1 ratio=0.77 184 A.A1423 A.A1424 angle=92 distance=14.7 ratio=0.72 185 A.A1432 A.U1433 angle=92 distance=12.1 ratio=0.74 186 A.A1434 A.U1435 angle=142 distance=19.1 ratio=0.95 187 A.U1435 A.U1436 angle=116 distance=16.6 ratio=0.85 188 A.U1457 A.U1458 angle=88 distance=13.4 ratio=0.70 189 A.U1458 A.U1459 angle=118 distance=15.3 ratio=0.86 190 A.U1459 A.G1460 angle=118 distance=14.4 ratio=0.86 191 A.A1465 A.U1466 angle=89 distance=13.1 ratio=0.70 192 A.U1466 A.G1467 angle=110 distance=15.5 ratio=0.82 193 A.C1474 A.G1475 angle=140 distance=18.5 ratio=0.94 194 A.A1499 A.U1500 angle=142 distance=17.8 ratio=0.94 195 A.U1505 A.A1506 angle=119 distance=13.5 ratio=0.87 196 A.A1506 A.U1507 angle=109 distance=15.4 ratio=0.82 197 A.G1512 A.U1513 angle=116 distance=17.4 ratio=0.85 198 A.U1528 A.G1529 angle=116 distance=15.2 ratio=0.85 199 A.U1535 A.A1536 angle=112 distance=13.9 ratio=0.83 200 A.A1536 A.G1537 angle=94 distance=14.0 ratio=0.73 201 A.G1538 A.C1539 angle=141 distance=14.0 ratio=0.95 202 A.A1542 A.U1543 angle=119 distance=14.9 ratio=0.86 203 A.U1543 A.C1544 angle=96 distance=14.3 ratio=0.74 204 A.A1569 A.U1570 angle=169 distance=18.5 ratio=1.00 205 A.U1570 A.G1571 angle=123 distance=16.0 ratio=0.88 206 A.A1583 A.U1584 angle=114 distance=14.9 ratio=0.84 207 A.U1584 A.A1585 angle=130 distance=16.7 ratio=0.91 208 A.G1594 A.U1595 angle=116 distance=16.5 ratio=0.85 209 A.U1602 A.U1603 angle=102 distance=15.2 ratio=0.78 210 A.A1614 A.A1615 angle=96 distance=14.3 ratio=0.74 211 A.G1616 A.A1617 angle=158 distance=21.0 ratio=0.98 212 A.G1642 A.C1643 angle=94 distance=13.6 ratio=0.73 213 A.U1647 A.A1648 angle=135 distance=17.9 ratio=0.93 214 A.G1651 A.C1652 angle=145 distance=18.2 ratio=0.95 215 A.A1653 A.A1654 angle=111 distance=17.1 ratio=0.83 216 A.A1655 A.C1656 angle=93 distance=13.9 ratio=0.73 217 A.G1658 A.A1659 angle=108 distance=13.8 ratio=0.81 218 A.C1660 A.A1661 angle=106 distance=15.4 ratio=0.80 219 A.A1661 A.C1662 angle=147 distance=18.8 ratio=0.96 220 A.C1662 A.A1663 angle=103 distance=15.1 ratio=0.78 221 A.A1663 A.G1664 angle=125 distance=16.3 ratio=0.89 222 A.G1671 A.A1672 angle=105 distance=14.5 ratio=0.79 223 A.G1676 A.A1677 angle=98 distance=12.9 ratio=0.76 224 A.G1678 A.A1679 angle=110 distance=16.1 ratio=0.82 225 A.A1679 A.A1680 angle=129 distance=17.0 ratio=0.90 226 A.A1691 A.U1692 angle=106 distance=16.1 ratio=0.80 227 A.U1692 A.C1693 angle=111 distance=17.6 ratio=0.82 228 A.G1698 A.A1699 angle=93 distance=15.3 ratio=0.72 229 A.G1718 A.G1719 angle=107 distance=15.3 ratio=0.80 230 A.G1726 A.A1727 angle=100 distance=13.9 ratio=0.77 231 A.U1737 A.U1738 angle=115 distance=15.5 ratio=0.84 232 A.U1738 A.C1739 angle=106 distance=15.7 ratio=0.80 233 A.A1743 A.G1744 angle=114 distance=16.8 ratio=0.84 234 A.G1744 A.A1745 angle=109 distance=17.2 ratio=0.81 235 A.U1751 A.G1752 angle=128 distance=16.5 ratio=0.90 236 A.G1757 A.U1758 angle=137 distance=17.9 ratio=0.93 237 A.U1758 A.U1759 angle=154 distance=17.6 ratio=0.98 238 A.G1765 A.C1766 angle=87 distance=11.7 ratio=0.69 239 A.A1784 A.G1785 angle=87 distance=11.9 ratio=0.69 240 A.G1785 A.U1786 angle=171 distance=19.8 ratio=1.00 241 A.U1786 A.G1787 angle=147 distance=16.4 ratio=0.96 242 A.G1787 A.A1788 angle=87 distance=13.0 ratio=0.69 243 A.A1791 A.G1792 angle=93 distance=15.1 ratio=0.73 244 A.U1808 A.A1809 angle=145 distance=19.8 ratio=0.95 245 A.G1810 A.C1811 angle=126 distance=17.2 ratio=0.89 246 A.A1814 A.A1815 angle=89 distance=13.0 ratio=0.70 247 A.A1815 A.A1816 angle=112 distance=15.2 ratio=0.83 248 A.C1829 A.G1830 angle=132 distance=18.2 ratio=0.91 249 A.G1830 A.A1831 angle=170 distance=18.4 ratio=1.00 250 A.A1844 A.A1845 angle=92 distance=14.8 ratio=0.72 251 A.A1845 A.G1846 angle=119 distance=15.1 ratio=0.86 252 A.A1848 A.U1849 angle=159 distance=18.6 ratio=0.98 253 A.U1849 A.A1850 angle=115 distance=16.0 ratio=0.84 254 A.G1857 A.A1858 angle=122 distance=17.3 ratio=0.87 255 A.U1863 A.G1864 angle=126 distance=17.1 ratio=0.89 256 A.U1881 A.A1882 angle=87 distance=12.1 ratio=0.69 257 A.U1927 A.A1928 angle=92 distance=13.2 ratio=0.72 258 A.G2009 A.A2010 angle=149 distance=16.7 ratio=0.97 259 A.A2010 A.U2011 angle=136 distance=17.5 ratio=0.93 260 A.U2020 A.G2021 angle=111 distance=14.1 ratio=0.82 261 A.U2046 A.A2047 angle=131 distance=17.5 ratio=0.91 262 A.A2049 A.G2050 angle=101 distance=13.1 ratio=0.77 263 A.G2050 A.U2051 angle=101 distance=15.0 ratio=0.77 264 A.U2051 A.A2052 angle=158 distance=18.6 ratio=0.98 265 A.G2058 A.A2059 angle=103 distance=16.2 ratio=0.79 266 A.G2061 A.A2062 angle=129 distance=17.0 ratio=0.90 267 A.A2062 A.U2063 angle=94 distance=14.5 ratio=0.73 268 A.G2064 A.C2065 angle=107 distance=15.8 ratio=0.80 269 A.A2071 A.C2072 angle=125 distance=16.7 ratio=0.89 270 A.A2083 A.C2084 angle=154 distance=18.5 ratio=0.97 271 A.C2084 A.G2085 angle=148 distance=19.0 ratio=0.96 272 A.A2088 A.A2089 angle=117 distance=17.6 ratio=0.85 273 A.A2089 A.G2090 angle=140 distance=18.9 ratio=0.94 274 A.A2091 A.C2092 angle=88 distance=14.3 ratio=0.70 275 A.G2096 A.U2097 angle=155 distance=20.6 ratio=0.98 276 A.U2097 A.G2098 angle=166 distance=17.3 ratio=0.99 277 A.U2104 A.U2105 angle=108 distance=14.7 ratio=0.81 278 A.U2105 A.A2106 angle=109 distance=15.2 ratio=0.81 279 A.G2139 A.U2140 angle=109 distance=17.5 ratio=0.82 280 A.U2140 A.A2141 angle=120 distance=12.3 ratio=0.88 281 A.A2141 A.C2142 angle=86 distance=13.9 ratio=0.68 282 A.C2142 A.A2143 angle=115 distance=17.4 ratio=0.84 283 A.A2148 A.G2149 angle=112 distance=15.4 ratio=0.83 284 A.A2152 A.G2153 angle=102 distance=14.2 ratio=0.78 285 A.A2155 A.G2156 angle=119 distance=17.4 ratio=0.86 286 A.U2160 A.G2161 angle=86 distance=13.4 ratio=0.68 287 A.G2173 A.C2174 angle=129 distance=14.5 ratio=0.91 288 A.G2195 A.U2196 angle=102 distance=16.2 ratio=0.78 289 A.U2196 A.G2197 angle=104 distance=13.0 ratio=0.79 290 A.G2197 A.G2198 angle=97 distance=11.6 ratio=0.75 291 A.U2201 A.A2202 angle=112 distance=15.5 ratio=0.83 292 A.A2202 A.C2203 angle=89 distance=12.8 ratio=0.70 293 A.A2227 A.A2228 angle=90 distance=13.4 ratio=0.71 294 A.C2231 A.G2232 angle=146 distance=17.6 ratio=0.96 295 A.G2232 A.C2233 angle=142 distance=18.7 ratio=0.95 296 A.U2239 A.U2240 angle=91 distance=13.7 ratio=0.71 297 A.A2241 A.U2242 angle=145 distance=18.5 ratio=0.95 298 A.U2242 A.C2243 angle=144 distance=17.9 ratio=0.95 299 A.U2291 A.C2292 angle=93 distance=12.9 ratio=0.73 300 A.C2293 A.U2294 angle=107 distance=15.5 ratio=0.80 301 A.U2294 A.A2295 angle=99 distance=11.9 ratio=0.76 302 A.A2296 A.A2297 angle=91 distance=11.7 ratio=0.75 303 A.A2297 A.A2298 angle=94 distance=14.1 ratio=0.73 304 A.U2301 A.A2302 angle=123 distance=13.2 ratio=0.89 305 A.C2304 A.G2305 angle=143 distance=16.4 ratio=0.95 306 A.C2310 A.G2311 angle=107 distance=14.8 ratio=0.81 307 A.G2311 A.C2312 angle=96 distance=11.5 ratio=0.76 308 A.C2312 A.C2313 angle=96 distance=13.6 ratio=0.75 309 A.A2315 A.A2316 angle=119 distance=16.1 ratio=0.86 310 A.A2316 A.A2317 angle=103 distance=13.7 ratio=0.79 311 A.G2319 A.U2320 angle=95 distance=15.0 ratio=0.74 312 A.G2347 A.C2348 angle=103 distance=13.5 ratio=0.79 313 A.U2353 A.G2354 angle=113 distance=13.0 ratio=0.86 314 A.G2354 A.U2355 angle=87 distance=12.9 ratio=0.69 315 A.A2362 A.C2363 angle=128 distance=12.1 ratio=0.90 316 A.C2363 A.A2364 angle=105 distance=14.3 ratio=0.80 317 A.A2365 A.G2366 angle=106 distance=13.8 ratio=0.80 318 A.U2373 A.G2374 angle=150 distance=20.3 ratio=0.97 319 A.G2374 A.A2375 angle=172 distance=16.3 ratio=1.00 320 A.A2375 A.C2376 angle=122 distance=17.1 ratio=0.88 321 A.U2386 A.A2387 angle=123 distance=16.9 ratio=0.88 322 A.C2410 A.G2411 angle=112 distance=16.1 ratio=0.83 323 A.G2411 A.G2412 angle=137 distance=14.6 ratio=0.94 324 A.G2412 A.G2413 angle=103 distance=12.4 ratio=0.80 325 A.G2413 A.C2414 angle=112 distance=17.5 ratio=0.83 326 A.G2418 A.U2419 angle=122 distance=18.2 ratio=0.88 327 A.U2430 A.U2431 angle=93 distance=14.0 ratio=0.73 328 A.U2431 A.C2432 angle=124 distance=14.9 ratio=0.88 329 A.G2434 A.C2435 angle=129 distance=16.6 ratio=0.90 330 A.C2435 A.A2436 angle=173 distance=18.0 ratio=1.00 331 A.G2450 A.C2451 angle=119 distance=16.0 ratio=0.86 332 A.C2451 A.U2452 angle=135 distance=15.1 ratio=0.93 333 A.U2452 A.C2453 angle=110 distance=16.0 ratio=0.82 334 A.C2453 A.A2454 angle=125 distance=18.6 ratio=0.89 335 A.A2454 A.A2455 angle=156 distance=17.8 ratio=0.98 336 A.A2455 A.C2456 angle=126 distance=18.0 ratio=0.89 337 A.C2456 A.G2457 angle=95 distance=15.5 ratio=0.74 338 A.G2458 A.A2459 angle=129 distance=14.6 ratio=0.91 339 A.A2459 A.U2460 angle=85 distance=11.5 ratio=0.68 340 A.U2467 A.A2468 angle=159 distance=18.4 ratio=0.98 341 A.A2468 A.C2469 angle=115 distance=18.0 ratio=0.84 342 A.A2488 A.U2489 angle=95 distance=15.8 ratio=0.74 343 A.U2520 A.U2521 angle=125 distance=14.2 ratio=0.89 344 A.U2521 A.U2522 angle=128 distance=17.5 ratio=0.90 345 A.U2522 A.G2523 angle=108 distance=16.9 ratio=0.81 346 A.C2546 A.A2547 angle=100 distance=12.5 ratio=0.77 347 A.A2547 A.U2548 angle=107 distance=16.0 ratio=0.80 348 A.U2557 A.G2558 angle=137 distance=15.7 ratio=0.93 349 A.G2558 A.U2559 angle=107 distance=16.4 ratio=0.81 350 A.U2559 A.A2560 angle=115 distance=14.3 ratio=0.84 351 A.U2575 A.U2576 angle=119 distance=17.8 ratio=0.86 352 A.U2592 A.A2593 angle=87 distance=12.6 ratio=0.69 353 A.A2595 A.G2596 angle=115 distance=18.0 ratio=0.84 354 A.C2630 A.A2631 angle=145 distance=18.9 ratio=0.95 355 A.A2631 A.G2632 angle=122 distance=18.6 ratio=0.88 356 A.G2637 A.U2638 angle=121 distance=17.5 ratio=0.87 357 A.U2638 A.C2639 angle=106 distance=14.7 ratio=0.80 358 A.C2641 A.U2642 angle=116 distance=16.6 ratio=0.85 359 A.U2642 A.A2643 angle=131 distance=17.6 ratio=0.91 360 A.C2657 A.A2658 angle=128 distance=18.2 ratio=0.90 361 A.A2658 A.G2659 angle=132 distance=18.1 ratio=0.91 362 A.G2674 A.C2675 angle=136 distance=18.0 ratio=0.93 363 A.G2688 A.A2689 angle=99 distance=10.9 ratio=0.77 364 A.G2717 A.U2718 angle=144 distance=18.5 ratio=0.95 365 A.U2718 A.A2719 angle=141 distance=17.2 ratio=0.94 366 A.A2719 A.C2720 angle=140 distance=18.2 ratio=0.94 367 A.A2740 A.U2741 angle=122 distance=15.8 ratio=0.87 368 A.C2742 A.G2743 angle=89 distance=13.4 ratio=0.70 369 A.G2761 A.A2762 angle=130 distance=17.2 ratio=0.91 370 A.A2779 A.G2780 angle=158 distance=16.2 ratio=0.98 371 A.G2780 A.C2781 angle=99 distance=14.1 ratio=0.76 372 A.U2783 A.C2784 angle=130 distance=15.8 ratio=0.91 373 A.C2784 A.U2785 angle=123 distance=16.2 ratio=0.88 374 A.A2805 A.G2806 angle=161 distance=17.6 ratio=0.99 375 A.G2806 A.A2807 angle=125 distance=19.0 ratio=0.89 376 A.A2807 A.U2808 angle=140 distance=19.6 ratio=0.94 377 A.U2808 A.G2809 angle=151 distance=18.3 ratio=0.97 378 A.G2809 A.A2810 angle=113 distance=16.2 ratio=0.83 379 A.A2810 A.G2811 angle=148 distance=17.7 ratio=0.96 380 A.A2819 A.U2820 angle=104 distance=15.7 ratio=0.79 381 A.G2824 A.C2825 angle=87 distance=11.6 ratio=0.69 382 A.G2847 A.A2848 angle=125 distance=15.5 ratio=0.89 383 A.G2856 A.U2857 angle=97 distance=13.9 ratio=0.75 384 A.U2857 A.U2858 angle=154 distance=19.5 ratio=0.97 385 A.U2858 A.G2859 angle=109 distance=15.6 ratio=0.81 386 A.G2874 A.A2875 angle=96 distance=13.7 ratio=0.74 387 A.G2882 A.C2883 angle=85 distance=12.1 ratio=0.68 388 A.G2891 A.G2892 angle=90 distance=14.7 ratio=0.71 389 A.U2896 A.G2897 angle=88 distance=12.9 ratio=0.69 390 A.A2898 A.C2899 angle=104 distance=15.6 ratio=0.79 391 A.A2908 A.U2909 angle=148 distance=17.8 ratio=0.96 392 A.G2918 A.A2919 angle=127 distance=16.8 ratio=0.89 393 B.C9 B.G10 angle=130 distance=15.0 ratio=0.91 394 B.G10 B.A11 angle=87 distance=12.9 ratio=0.69 395 B.A11 B.U12 angle=155 distance=17.8 ratio=0.98 396 B.A13 B.G14 angle=110 distance=14.7 ratio=0.82 397 B.A37 B.U38 angle=98 distance=11.9 ratio=0.75 398 B.U38 B.A39 angle=102 distance=12.3 ratio=0.79 399 B.A39 B.C40 angle=97 distance=15.7 ratio=0.75 400 B.C41 B.G42 angle=151 distance=14.7 ratio=0.97 401 B.G42 B.A43 angle=91 distance=14.1 ratio=0.72 402 B.C45 B.A46 angle=85 distance=11.0 ratio=0.71 403 B.A46 B.C47 angle=116 distance=17.2 ratio=0.85 404 B.C47 B.G48 angle=123 distance=16.7 ratio=0.88 405 B.G84 B.U85 angle=93 distance=12.5 ratio=0.72 406 B.C106 B.G107 angle=117 distance=18.5 ratio=0.85 ---------------------------------------------------------------- Summary of 251 splayed-apart units 1 nts=2 GC A.G45,A.C46 2 nts=3 AUG A.A49,A.U50,A.G51 3 nts=5 AUAUG A.A71,A.U72,A.A73,A.U74,A.G75 4 nts=2 UG A.U87,A.G88 5 nts=3 UUG A.U99,A.U100,A.G101 6 nts=2 UU A.U112,A.U113 7 nts=2 UG A.U119,A.G120 8 nts=3 GAA A.G123,A.A124,A.A125 9 nts=2 AC A.A126,A.C127 10 nts=2 UA A.U149,A.A150 11 nts=3 GAG A.G175,A.A176,A.G177 12 nts=3 AGA A.A183,A.G184,A.A185 13 nts=4 AAAC A.A198,A.A199,A.A200,A.C201 14 nts=3 AUC A.A202,A.U203,A.C204 15 nts=3 AAG A.A225,A.A226,A.G227 16 nts=2 GA A.G235,A.A236 17 nts=2 GC A.G251,A.C252 18 nts=2 CA A.C267,A.A268 19 nts=2 UA A.U301,A.A302 20 nts=2 UU A.U320,A.U321 21 nts=2 CA A.C323,A.A324 22 nts=4 AGAG A.A343,A.G344,A.A345,A.G346 23 nts=2 GG A.G351,A.G352 24 nts=2 AG A.A355,A.G356 25 nts=2 AU A.A364,A.U365 26 nts=2 GG A.G367,A.G368 27 nts=2 UA A.U372,A.A373 28 nts=3 CAG A.C375,A.A376,A.G377 29 nts=2 CC A.C378,A.C379 30 nts=2 CU A.C404,A.U405 31 nts=3 UGA A.U416,A.G417,A.A418 32 nts=3 CGU A.C432,A.G433,A.U434 33 nts=3 CCG A.C451,A.C452,A.G453 34 nts=3 GGA A.G457,A.G458,A.A459 35 nts=2 AG A.A470,A.G471 36 nts=2 UA A.U474,A.A475 37 nts=3 GAC A.G489,A.A490,A.C491 38 nts=3 AUA A.A494,A.U495,A.A496 39 nts=2 AA A.A500,A.A501 40 nts=3 CCA A.C502,A.C503,A.A504 41 nts=2 AG A.A519,A.G520 42 nts=2 GU A.G521,A.U522 43 nts=2 CA A.C529,A.A530 44 nts=3 AGA A.A549,A.G550,A.A551 45 nts=4 AUCC A.A553,A.U554,A.C555,A.C556 46 nts=2 AC A.A572,A.C573 47 nts=2 GU A.G576,A.U577 48 nts=3 UUA A.U590,A.U591,A.A592 49 nts=3 ACG A.A593,A.C594,A.G595 50 nts=3 GUG A.G605,A.U606,A.G607 51 nts=2 AA A.A618,A.A619 52 nts=2 AA A.A622,A.A623 53 nts=2 GU A.G631,A.U632 54 nts=4 GAAG A.G657,A.A658,A.A659,A.G660 55 nts=2 CA A.C672,A.A673 56 nts=2 GA A.G688,A.A689 57 nts=3 AUA A.A690,A.U691,A.A692 58 nts=2 UG A.U700,A.G701 59 nts=2 AC A.A717,A.C718 60 nts=3 AUC A.A732,A.U733,A.C734 61 nts=2 CA A.C745,A.A746 62 nts=2 UA A.U761,A.A762 63 nts=3 GGC A.G775,A.G776,A.C777 64 nts=3 UUG A.U793,A.U794,A.G795 65 nts=3 AAA A.A797,A.A798,A.A799 66 nts=2 AU A.A808,A.U809 67 nts=3 GAG A.G810,A.A811,A.G812 68 nts=3 GGG A.G822,A.G823,A.G824 69 nts=3 GAA A.G827,A.A828,A.A829 70 nts=3 AUG A.A830,A.U831,A.G832 71 nts=4 CAAU A.C834,A.A835,A.A836,A.U837 72 nts=2 CG A.C838,A.G839 73 nts=2 AA A.A840,A.A841 74 nts=3 AGA A.A847,A.G848,A.A849 75 nts=2 UC A.U858,A.C859 76 nts=2 AU A.A868,A.U869 77 nts=2 UU A.U873,A.U874 78 nts=3 AGG A.A876,A.G877,A.G878 79 nts=2 AA A.A956,A.A957 80 nts=2 AC A.A958,A.C959 81 nts=3 CAG A.C990,A.A991,A.G992 82 nts=4 GAUA A.G1002,A.A1003,A.U1004,A.A1005 83 nts=3 AGA A.A1006,A.G1007,A.A1008 84 nts=2 AA A.A1025,A.A1026 85 nts=2 CA A.C1028,A.A1029 86 nts=2 GC A.G1030,A.C1031 87 nts=2 AC A.A1036,A.C1037 88 nts=3 CCA A.C1040,A.C1041,A.A1042 89 nts=2 UC A.U1050,A.C1051 90 nts=3 GUA A.G1057,A.U1058,A.A1059 91 nts=2 GA A.G1071,A.A1072 92 nts=3 AUG A.A1078,A.U1079,A.G1080 93 nts=4 UUAG A.U1090,A.U1091,A.A1092,A.G1093 94 nts=2 AA A.A1172,A.A1173 95 nts=2 AU A.A1175,A.U1176 96 nts=3 ACC A.A1179,A.C1180,A.C1181 97 nts=3 AAA A.A1188,A.A1189,A.A1190 98 nts=3 AAG A.A1201,A.A1202,A.G1203 99 nts=2 CG A.C1219,A.G1220 100 nts=2 UG A.U1226,A.G1227 101 nts=3 GUG A.G1250,A.U1251,A.G1252 102 nts=3 GAC A.G1259,A.A1260,A.C1261 103 nts=2 GG A.G1263,A.G1264 104 nts=3 AGU A.A1287,A.G1288,A.U1289 105 nts=3 GAG A.G1290,A.A1291,A.G1292 106 nts=4 AAUG A.A1293,A.A1294,A.U1295,A.G1296 107 nts=3 CGA A.C1310,A.G1311,A.A1312 108 nts=2 AA A.A1313,A.A1314 109 nts=2 GA A.G1322,A.A1323 110 nts=2 AA A.A1325,A.A1326 111 nts=2 GA A.G1338,A.A1339 112 nts=3 AUG A.A1340,A.U1341,A.G1342 113 nts=3 GCU A.G1363,A.C1364,A.U1365 114 nts=2 GU A.G1367,A.U1368 115 nts=2 GC A.G1371,A.C1372 116 nts=4 UUAG A.U1379,A.U1380,A.A1381,A.G1382 117 nts=2 UC A.U1383,A.C1384 118 nts=2 AA A.A1423,A.A1424 119 nts=2 AU A.A1432,A.U1433 120 nts=3 AUU A.A1434,A.U1435,A.U1436 121 nts=4 UUUG A.U1457,A.U1458,A.U1459,A.G1460 122 nts=3 AUG A.A1465,A.U1466,A.G1467 123 nts=2 CG A.C1474,A.G1475 124 nts=2 AU A.A1499,A.U1500 125 nts=3 UAU A.U1505,A.A1506,A.U1507 126 nts=2 GU A.G1512,A.U1513 127 nts=2 UG A.U1528,A.G1529 128 nts=3 UAG A.U1535,A.A1536,A.G1537 129 nts=2 GC A.G1538,A.C1539 130 nts=3 AUC A.A1542,A.U1543,A.C1544 131 nts=3 AUG A.A1569,A.U1570,A.G1571 132 nts=3 AUA A.A1583,A.U1584,A.A1585 133 nts=2 GU A.G1594,A.U1595 134 nts=2 UU A.U1602,A.U1603 135 nts=2 AA A.A1614,A.A1615 136 nts=2 GA A.G1616,A.A1617 137 nts=2 GC A.G1642,A.C1643 138 nts=2 UA A.U1647,A.A1648 139 nts=2 GC A.G1651,A.C1652 140 nts=2 AA A.A1653,A.A1654 141 nts=2 AC A.A1655,A.C1656 142 nts=2 GA A.G1658,A.A1659 143 nts=5 CACAG A.C1660,A.A1661,A.C1662,A.A1663,A.G1664 144 nts=2 GA A.G1671,A.A1672 145 nts=2 GA A.G1676,A.A1677 146 nts=3 GAA A.G1678,A.A1679,A.A1680 147 nts=3 AUC A.A1691,A.U1692,A.C1693 148 nts=2 GA A.G1698,A.A1699 149 nts=2 GG A.G1718,A.G1719 150 nts=2 GA A.G1726,A.A1727 151 nts=3 UUC A.U1737,A.U1738,A.C1739 152 nts=3 AGA A.A1743,A.G1744,A.A1745 153 nts=2 UG A.U1751,A.G1752 154 nts=3 GUU A.G1757,A.U1758,A.U1759 155 nts=2 GC A.G1765,A.C1766 156 nts=5 AGUGA A.A1784,A.G1785,A.U1786,A.G1787,A.A1788 157 nts=2 AG A.A1791,A.G1792 158 nts=2 UA A.U1808,A.A1809 159 nts=2 GC A.G1810,A.C1811 160 nts=3 AAA A.A1814,A.A1815,A.A1816 161 nts=3 CGA A.C1829,A.G1830,A.A1831 162 nts=3 AAG A.A1844,A.A1845,A.G1846 163 nts=3 AUA A.A1848,A.U1849,A.A1850 164 nts=2 GA A.G1857,A.A1858 165 nts=2 UG A.U1863,A.G1864 166 nts=2 UA A.U1881,A.A1882 167 nts=2 UA A.U1927,A.A1928 168 nts=3 GAU A.G2009,A.A2010,A.U2011 169 nts=2 UG A.U2020,A.G2021 170 nts=2 UA A.U2046,A.A2047 171 nts=4 AGUA A.A2049,A.G2050,A.U2051,A.A2052 172 nts=2 GA A.G2058,A.A2059 173 nts=3 GAU A.G2061,A.A2062,A.U2063 174 nts=2 GC A.G2064,A.C2065 175 nts=2 AC A.A2071,A.C2072 176 nts=3 ACG A.A2083,A.C2084,A.G2085 177 nts=3 AAG A.A2088,A.A2089,A.G2090 178 nts=2 AC A.A2091,A.C2092 179 nts=3 GUG A.G2096,A.U2097,A.G2098 180 nts=3 UUA A.U2104,A.U2105,A.A2106 181 nts=5 GUACA A.G2139,A.U2140,A.A2141,A.C2142,A.A2143 182 nts=2 AG A.A2148,A.G2149 183 nts=2 AG A.A2152,A.G2153 184 nts=2 AG A.A2155,A.G2156 185 nts=2 UG A.U2160,A.G2161 186 nts=2 GC A.G2173,A.C2174 187 nts=4 GUGG A.G2195,A.U2196,A.G2197,A.G2198 188 nts=3 UAC A.U2201,A.A2202,A.C2203 189 nts=2 AA A.A2227,A.A2228 190 nts=3 CGC A.C2231,A.G2232,A.C2233 191 nts=2 UU A.U2239,A.U2240 192 nts=3 AUC A.A2241,A.U2242,A.C2243 193 nts=2 UC A.U2291,A.C2292 194 nts=3 CUA A.C2293,A.U2294,A.A2295 195 nts=3 AAA A.A2296,A.A2297,A.A2298 196 nts=2 UA A.U2301,A.A2302 197 nts=2 CG A.C2304,A.G2305 198 nts=4 CGCC A.C2310,A.G2311,A.C2312,A.C2313 199 nts=3 AAA A.A2315,A.A2316,A.A2317 200 nts=2 GU A.G2319,A.U2320 201 nts=2 GC A.G2347,A.C2348 202 nts=3 UGU A.U2353,A.G2354,A.U2355 203 nts=3 ACA A.A2362,A.C2363,A.A2364 204 nts=2 AG A.A2365,A.G2366 205 nts=4 UGAC A.U2373,A.G2374,A.A2375,A.C2376 206 nts=2 UA A.U2386,A.A2387 207 nts=5 CGGGC A.C2410,A.G2411,A.G2412,A.G2413,A.C2414 208 nts=2 GU A.G2418,A.U2419 209 nts=3 UUC A.U2430,A.U2431,A.C2432 210 nts=3 GCA A.G2434,A.C2435,A.A2436 211 nts=8 GCUCAACG A.G2450,A.C2451,A.U2452,A.C2453,A.A2454,A.A2455,A.C2456,A.G2457 212 nts=3 GAU A.G2458,A.A2459,A.U2460 213 nts=3 UAC A.U2467,A.A2468,A.C2469 214 nts=2 AU A.A2488,A.U2489 215 nts=4 UUUG A.U2520,A.U2521,A.U2522,A.G2523 216 nts=3 CAU A.C2546,A.A2547,A.U2548 217 nts=4 UGUA A.U2557,A.G2558,A.U2559,A.A2560 218 nts=2 UU A.U2575,A.U2576 219 nts=2 UA A.U2592,A.A2593 220 nts=2 AG A.A2595,A.G2596 221 nts=3 CAG A.C2630,A.A2631,A.G2632 222 nts=3 GUC A.G2637,A.U2638,A.C2639 223 nts=3 CUA A.C2641,A.U2642,A.A2643 224 nts=3 CAG A.C2657,A.A2658,A.G2659 225 nts=2 GC A.G2674,A.C2675 226 nts=2 GA A.G2688,A.A2689 227 nts=4 GUAC A.G2717,A.U2718,A.A2719,A.C2720 228 nts=2 AU A.A2740,A.U2741 229 nts=2 CG A.C2742,A.G2743 230 nts=2 GA A.G2761,A.A2762 231 nts=3 AGC A.A2779,A.G2780,A.C2781 232 nts=3 UCU A.U2783,A.C2784,A.U2785 233 nts=7 AGAUGAG A.A2805,A.G2806,A.A2807,A.U2808,A.G2809,A.A2810,A.G2811 234 nts=2 AU A.A2819,A.U2820 235 nts=2 GC A.G2824,A.C2825 236 nts=2 GA A.G2847,A.A2848 237 nts=4 GUUG A.G2856,A.U2857,A.U2858,A.G2859 238 nts=2 GA A.G2874,A.A2875 239 nts=2 GC A.G2882,A.C2883 240 nts=2 GG A.G2891,A.G2892 241 nts=2 UG A.U2896,A.G2897 242 nts=2 AC A.A2898,A.C2899 243 nts=2 AU A.A2908,A.U2909 244 nts=2 GA A.G2918,A.A2919 245 nts=4 CGAU B.C9,B.G10,B.A11,B.U12 246 nts=2 AG B.A13,B.G14 247 nts=4 AUAC B.A37,B.U38,B.A39,B.C40 248 nts=3 CGA B.C41,B.G42,B.A43 249 nts=4 CACG B.C45,B.A46,B.C47,B.G48 250 nts=2 GU B.G84,B.U85 251 nts=2 CG B.C106,B.G107 **************************************************************************** This structure contains 4-order pseudoknot o You may want to run DSSR again with the '--nested' option which removes pseudoknots to get a fully nested secondary structure representation. **************************************************************************** Secondary structures in dot-bracket notation (dbn) as a whole and per chain >9bs0 nts=2791 [whole] UUAAGUUAGAAAGGGCGCACGGUGGAUGCCUUGGCACUAGGAGCCGAUGAAGGACGGGACGAACACCGAUAUGCUUCGGGGAGCUGUAAGCAAGCUUUGAUCCGGAGAUUUCCGAAUGGGGAAACCCACCACUCGUAAUGGAGUGGUAUCCAUAUCUGAAUUCAUAGGAUAUGAGAAGGCAGACCCGGGGAACUGAAACAUCUAAGUACCCGGAGGAAGAGAAAGCAAAUGCGAUUCCCUGAGUAGCGGCGAGCGAAACGGGAUCAGCCCAAACCAAGAGGCUUGCCUCUUGGGGUUGUAGGACACUCUGUACGGAGUUACAAAGGAACGAGGUAGAUGAAGAGGUCUGGAAAGGCCCGCCAUAGGAGGUAACAGCCCUGUAGUCAAAACUUCGUUCUCUCCUGAGUGGAUCCUGAGUACGGCGGAACACGUGAAAUUCCGUCGGAAUCCGGGAGGACCAUCUCCCAAGGCUAAAUACUCCCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAGAGAUCCUGAAACCGUGUGCCUACAAGUAGUCAGAGCCCGUUAACGGGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUCUCGUGCAAGGUUAAGCAGAAGAUGCGGAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGCAUGAGUACGUGGUCGUAGACCCGAAACCAGGUGAUCUACCCAUGUCCAGGGUGAAGUUCAGGUAACACUGAAUGGAGGCCCGAACCCACGCACGUUGAAAAGUGCGGGGAUGAGGUGUGGGUAGGGGUGAAAUGCCAAUCGAACCUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCAAGGUAAGAGUCUUGGAGGUAGAGCACUGAUUGGA&CGAAUUCAGUCAAACUCCGAAUGCCAAUGACUUAUCCUUGGGAGUCAGACUGCGAGUGAUAAGAUCCGUAGUCGAAAGGGAAACAGCCCAGACCGCCAGCUAAGGUCCCAAAGUAUACGUUAAGUGGAAAAGGAUGUGGAGUUGCUUAGACAAC&GUCGAGUGACUCUGCGCCGAAAAUGUACCGGGGCUAAACGUAUCACCGAAGCUGCGGACUGUUCUUCGAACAGUGGUAGGAGAGCGUUCUAAGGGCUGUGAAGCCAGACCGGAAGGACUGGUGGAGCGCUUAGAAGUGAGAAUGCCGGUAUGAGUAGCGAAAGAGGGGUGAGAAUCCCCUCCACCGAAUGCCUAAGGUUUCCUGAGGAAGGCUCGUCCGCUCAGGGUUAGUCGGGACCUAAGCCGAGGCCGAAAGGCGUAGGCGAUGGACAACAGGUUGAUAUUCCUGUACCACCUCCUCACCAUUUGAGCAAUGGGGGGACGCAGGAGGAUAGGGUAAGCGCGGUAUUGGAUAUCCGCGUCCAAGCAGUUAGGCUGGGAAAUAGGCAAAUCCGUUUCCCAUAAGCCUGAGCUGUGAUGGCGAGCGAAAUAUAGUAGCGAAGUUCCUGAUUCCACACUGCCAAGAAAAGCCUCUAGCGAGGUGAGAGGUGCCCGUACCGCAAACCGACACAGGUAGGCGAGGAGAGAAUCCUAAGGUGAUCGAGAGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUGUUAGGGUGCAAGCCCGAGAGAGCCGCAGUGAAUAGGCCCAGGCGACUGUUUAGCAAAAACACAGGUCUCUGCGAAGCCGUAAGGCGAAGUAUAGGGGCUGACGCCUG&CCGGUGCUGGAAGGUUAAGAGGAGC&CGAAUUGAAGCCCCAGUAA&CAACGAUCUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUUAUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCGUGGAGCUUUACUGCAGCCUGAUAUUGAAUGUUGGUACAGCUUGUACAGGAUAGGUAGGAGCCUUGGAAACCGGAGCGCCAGCUUCGGUGGAGGCAUCGGUGGGAUACUACCCUGGCUGUAUUGACCUUCUAACCCGCCGCCCUUAUCGGGCGGGGAGACAGUGUCAGGUGGGCAGUU&CCUCCUAAAAGGUAACGGAGGCGCCCAAAGGUUCCCUCAGAAUGG&UCAUUCGCAGAGUGUAAAGGCACAAGGGAGCUUGACUGCGAGACCUACAAGUCGAGCAGGGACGAAAGUCGGGCUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCC&AUCUCCCCCAA&CGGGGAGGUUUGGCA&CGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGU&CAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGCGGGCGCAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACGCACCGCUGGUGUACCAGUUGUUCUGCCAAGGGCAUCGCUGGGUAGCUAUGUGCGGACGGGAUAAGUGCUGAAAGCAUCUAAGCAUGAAGCCCCCCUCAAGAUGAGAUUUCCCAUUCCGCAAGGAAGUAAGAUCCCUGAAAGAUGAUCAGGUUGAUAGGUCUGAGGUGGAAGUGUGGCGACACAUGGAGCUGACAGAUACUAAUCGAUCGAGGACUUAAC&UGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUCGGGGGUU&CCCCCUGUGAGAGUAGGACGCCGCCAA&g&g ((((((......((((((((((.....(((..(((((((((((((......((((((..[..[[[)))...].((((((...(((]]..]..)))......))))))...)))....(((....)))(((((((......)))))))..(((((((...........)))))).)..))....((((((.....(......)......))))).).........((....))...((((......((.....)).....))))...((((...((((.(((....))).))))....[.(((((((((.....((((.......(((((((.((.(((...(.((((......)))))[[(...).(((.....]])))...)))...)).))))))))))).)))))..)))))....((((((((.........))))))))....].(((((.....[)))))..)))......)).))))))).))...............((....))....))......(..((((....))))............)).....)))))))))).....(.((((..((((..<...))))..)))).[.(.(........).).((((((....(((((((.(((((..(((...(((.....)))...)))...((....))..((((.....))))......))))).)))))))..((.(...((((((.....((((((((((.((((...((((((......))))))...)[)))...(((.(((((.......A))))))))..).))))))))).(.(((.....)))...)..))))))......).))..((((((....((((......))))(((((((((...(((((.........(.(...(((.((..&......)).)))..)..)..........)))))..))))))).))..(((((((.((......)).)))))))....(((......)))...((((.(((...((([[[...(.((((((.....(.....((..(.((....((.....{...&.....))....)).).))...........]]].)...))))))))))...)))))))(((((((...)))))))....))))))(.(((((...((......(((((.((....))>)))))...))...)))))..).....))))))(......((....((((((.......))))))((((....(((...((..(((((((...((.....)).))))))....[[((((.((...(((...(((....)))...)))...))...(((((........)))))]](((((.((((((......((...((((....((((..(((..(((.(.(((.(.....{....).))).((....(....((((.((((((..((.....)).))))))....)))).....)....))(..((...........))...)).)))...)))...))))(..).....))))..))..))))))))))))))).))).....((......))..))).((((.....))))..))))..((((....((((((((.((..(....(.......(((((....(.{..).....)))))(((((....((((....))))...)))))(...).......(((((((((.].((.........))...(((((((.....(((....))).......))))))).}......&......((.(...((...((.....&....))...))..)))...&...)).))))))).)..))).)))))))).)))))).....)).{..(((((.....]}.)))))..((((((((.(((.((...........((((((..(((((..((.(((((.(.(.((..((((((((.(.........(((....((..........(..((....))..).......))..............)))).))))))))..)).).)....((.((((((.....)))))))).....))))).))...))))).&((.................))..............(....(.(..&..)).....................).........((.(...((......))...).))................................((..].....))....................))))..)).&..(...(....&....)..).......&......(((((..((((((((........)))))..))).(((((.....))))).....)))))&..(((((((....))).))))..a.))..)))))))))))[...(((((((...((((..((((((......(....).....)))))).(((((...((((...(((((((((((.}..))))))..)))))...)))).)))))...(((....((((.....}.......))))....))).))))..]....)))))))(.((((....))))....(((((((((.......)))))....((((((((.(((....(((((....)))))...)))..))))).)))...))))...))))))).&(((((((....((((((((.....(.((.....(.....).....))...)....)))))).)).((........(.(((((..&))))).)........))..))))))).&.&. >9bs0-A #1 nts=2678 0.00(3.60) [chain] RNA* UUAAGUUAGAAAGGGCGCACGGUGGAUGCCUUGGCACUAGGAGCCGAUGAAGGACGGGACGAACACCGAUAUGCUUCGGGGAGCUGUAAGCAAGCUUUGAUCCGGAGAUUUCCGAAUGGGGAAACCCACCACUCGUAAUGGAGUGGUAUCCAUAUCUGAAUUCAUAGGAUAUGAGAAGGCAGACCCGGGGAACUGAAACAUCUAAGUACCCGGAGGAAGAGAAAGCAAAUGCGAUUCCCUGAGUAGCGGCGAGCGAAACGGGAUCAGCCCAAACCAAGAGGCUUGCCUCUUGGGGUUGUAGGACACUCUGUACGGAGUUACAAAGGAACGAGGUAGAUGAAGAGGUCUGGAAAGGCCCGCCAUAGGAGGUAACAGCCCUGUAGUCAAAACUUCGUUCUCUCCUGAGUGGAUCCUGAGUACGGCGGAACACGUGAAAUUCCGUCGGAAUCCGGGAGGACCAUCUCCCAAGGCUAAAUACUCCCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAGAGAUCCUGAAACCGUGUGCCUACAAGUAGUCAGAGCCCGUUAACGGGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUCUCGUGCAAGGUUAAGCAGAAGAUGCGGAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGCAUGAGUACGUGGUCGUAGACCCGAAACCAGGUGAUCUACCCAUGUCCAGGGUGAAGUUCAGGUAACACUGAAUGGAGGCCCGAACCCACGCACGUUGAAAAGUGCGGGGAUGAGGUGUGGGUAGGGGUGAAAUGCCAAUCGAACCUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCAAGGUAAGAGUCUUGGAGGUAGAGCACUGAUUGGA&CGAAUUCAGUCAAACUCCGAAUGCCAAUGACUUAUCCUUGGGAGUCAGACUGCGAGUGAUAAGAUCCGUAGUCGAAAGGGAAACAGCCCAGACCGCCAGCUAAGGUCCCAAAGUAUACGUUAAGUGGAAAAGGAUGUGGAGUUGCUUAGACAAC&GUCGAGUGACUCUGCGCCGAAAAUGUACCGGGGCUAAACGUAUCACCGAAGCUGCGGACUGUUCUUCGAACAGUGGUAGGAGAGCGUUCUAAGGGCUGUGAAGCCAGACCGGAAGGACUGGUGGAGCGCUUAGAAGUGAGAAUGCCGGUAUGAGUAGCGAAAGAGGGGUGAGAAUCCCCUCCACCGAAUGCCUAAGGUUUCCUGAGGAAGGCUCGUCCGCUCAGGGUUAGUCGGGACCUAAGCCGAGGCCGAAAGGCGUAGGCGAUGGACAACAGGUUGAUAUUCCUGUACCACCUCCUCACCAUUUGAGCAAUGGGGGGACGCAGGAGGAUAGGGUAAGCGCGGUAUUGGAUAUCCGCGUCCAAGCAGUUAGGCUGGGAAAUAGGCAAAUCCGUUUCCCAUAAGCCUGAGCUGUGAUGGCGAGCGAAAUAUAGUAGCGAAGUUCCUGAUUCCACACUGCCAAGAAAAGCCUCUAGCGAGGUGAGAGGUGCCCGUACCGCAAACCGACACAGGUAGGCGAGGAGAGAAUCCUAAGGUGAUCGAGAGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUGUUAGGGUGCAAGCCCGAGAGAGCCGCAGUGAAUAGGCCCAGGCGACUGUUUAGCAAAAACACAGGUCUCUGCGAAGCCGUAAGGCGAAGUAUAGGGGCUGACGCCUG&CCGGUGCUGGAAGGUUAAGAGGAGC&CGAAUUGAAGCCCCAGUAA&CAACGAUCUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUUAUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCGUGGAGCUUUACUGCAGCCUGAUAUUGAAUGUUGGUACAGCUUGUACAGGAUAGGUAGGAGCCUUGGAAACCGGAGCGCCAGCUUCGGUGGAGGCAUCGGUGGGAUACUACCCUGGCUGUAUUGACCUUCUAACCCGCCGCCCUUAUCGGGCGGGGAGACAGUGUCAGGUGGGCAGUU&CCUCCUAAAAGGUAACGGAGGCGCCCAAAGGUUCCCUCAGAAUGG&UCAUUCGCAGAGUGUAAAGGCACAAGGGAGCUUGACUGCGAGACCUACAAGUCGAGCAGGGACGAAAGUCGGGCUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCC&AUCUCCCCCAA&CGGGGAGGUUUGGCA&CGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGU&CAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGCGGGCGCAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACGCACCGCUGGUGUACCAGUUGUUCUGCCAAGGGCAUCGCUGGGUAGCUAUGUGCGGACGGGAUAAGUGCUGAAAGCAUCUAAGCAUGAAGCCCCCCUCAAGAUGAGAUUUCCCAUUCCGCAAGGAAGUAAGAUCCCUGAAAGAUGAUCAGGUUGAUAGGUCUGAGGUGGAAGUGUGGCGACACAUGGAGCUGACAGAUACUAAUCGAUCGAGGACUUAAC ((((((......((((((((((.....(((..(((((((((((((......((((((..[..[[[)))...].((((((...(((]]..]..)))......))))))...)))....(((....)))(((((((......)))))))..(((((((...........)))))).)..))....((((((.....(......)......))))).).........((....))...((((......((.....)).....))))...((((...((((.(((....))).))))....[.(((((((((.....((((.......(((((((.((.(((...(.((((......)))))[[(...).(((.....]])))...)))...)).))))))))))).)))))..)))))....((((((((.........))))))))....].(((((.....[)))))..)))......)).))))))).))...............((....))....))......(..((((....))))............)).....)))))))))).....(.((((..((((..<...))))..)))).[.(.(........).).((((((....(((((((.(((((..(((...(((.....)))...)))...((....))..((((.....))))......))))).)))))))..((.(...((((((.....((((((((((.((((...((((((......))))))...)[)))...(((.(((((.......A))))))))..).))))))))).(.(((.....)))...)..))))))......).))..((((((....((((......))))(((((((((...(((((.........(.(...(((.((..&......)).)))..)..)..........)))))..))))))).))..(((((((.((......)).)))))))....(((......)))...((((.(((...((([[[...(.((((((.....(.....((..(.((....((.....{...&.....))....)).).))...........]]].)...))))))))))...)))))))(((((((...)))))))....))))))(.(((((...((......(((((.((....))>)))))...))...)))))..).....))))))(......((....((((((.......))))))((((....(((...((..(((((((...((.....)).))))))....[[((((.((...(((...(((....)))...)))...))...(((((........)))))]](((((.((((((......((...((((....((((..(((..(((.(.(((.(.....{....).))).((....(....((((.((((((..((.....)).))))))....)))).....)....))(..((...........))...)).)))...)))...))))(..).....))))..))..))))))))))))))).))).....((......))..))).((((.....))))..))))..((((....((((((((.((..(....(.......(((((....(.{..).....)))))(((((....((((....))))...)))))(...).......(((((((((.].((.........))...(((((((.....(((....))).......))))))).}......&......((.(...((...((.....&....))...))..)))...&...)).))))))).)..))).)))))))).)))))).....)).{..(((((.....]}.)))))..((((((((.(((.((...........((((((..(((((..((.(((((.(.(.((..((((((((.(.........(((....((..........(..((....))..).......))..............)))).))))))))..)).).)....((.((((((.....)))))))).....))))).))...))))).&((.................))..............(....(.(..&..)).....................).........((.(...((......))...).))................................((..].....))....................))))..)).&..(...(....&....)..).......&......(((((..((((((((........)))))..))).(((((.....))))).....)))))&..(((((((....))).))))..a.))..)))))))))))[...(((((((...((((..((((((......(....).....)))))).(((((...((((...(((((((((((.}..))))))..)))))...)))).)))))...(((....((((.....}.......))))....))).))))..]....)))))))(.((((....))))....(((((((((.......)))))....((((((((.(((....(((((....)))))...)))..))))).)))...))))...))))))). >9bs0-B #2 nts=111 0.02(3.02) [chain] RNA* UGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUCGGGGGUU&CCCCCUGUGAGAGUAGGACGCCGCCAA (((((((....((((((((.....(.((.....(.....).....))...)....)))))).)).((........(.(((((..&))))).)........))..))))))). **************************************************************************** Summary of structural features of 2791 nucleotides Note: the first five columns are: (1) serial number, (2) one-letter shorthand name, (3) dbn, (4) id string, (5) rmsd (~zero) of base ring atoms fitted against those in a standard base reference frame. The sixth (last) column contains a comma-separated list of features whose meanings are mostly self-explanatory, except for: turn: angle C1'(i-1)--C1'(i)--C1'(i+1) < 90 degrees break: no backbone linkage between O3'(i-1) and P(i) 1 U ( A.U3 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end 2 U ( A.U4 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 3 A ( A.A5 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 4 A ( A.A6 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 5 G ( A.G7 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 6 U ( A.U8 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,phosphate 7 U . A.U9 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 8 A . A.A10 0.008 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 9 G . A.G11 0.013 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 10 A . A.A12 0.011 anti,~C3'-endo,non-pair-contact,ss-non-loop 11 A . A.A13 0.011 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate 12 A . A.A14 0.008 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,A-minor 13 G ( A.G15 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 14 G ( A.G16 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 15 G ( A.G17 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 16 C ( A.C18 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 17 G ( A.G19 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 18 C ( A.C20 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 19 A ( A.A21 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 20 C ( A.C22 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 21 G ( A.G23 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 22 G ( A.G24 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 23 U . A.U25 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 24 G . A.G26 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 25 G . A.G27 0.015 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 26 A . A.A28 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 27 U . A.U29 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 28 G ( A.G30 0.013 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,A-minor 29 C ( A.C31 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 30 C ( A.C32 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 31 U . A.U33 0.010 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,junction-loop 32 U . A.U34 0.004 turn,anti,~C2'-endo,BI,non-stack,non-pair-contact,junction-loop 33 G ( A.G35 0.013 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor 34 G ( A.G36 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 35 C ( A.C37 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 36 A ( A.A38 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 37 C ( A.C39 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 38 U ( A.U40 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 39 A ( A.A41 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 40 G ( A.G42 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 41 G ( A.G43 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 42 A ( A.A44 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 43 G ( A.G45 0.009 anti,~C3'-endo,BII,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,cap-acceptor,splayed-apart 44 C ( A.C46 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart 45 C ( A.C47 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 46 G . A.G48 0.013 anti,~C3'-endo,BII,non-pair-contact,junction-loop 47 A . A.A49 0.011 turn,syn,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 48 U . A.U50 0.006 turn,anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 49 G . A.G51 0.011 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate,splayed-apart 50 A . A.A52 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate 51 A . A.A53 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 52 G ( A.G54 0.010 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor 53 G ( A.G55 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 54 A ( A.A56 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,cap-donor 55 C ( A.C57 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 56 G ( A.G58 0.008 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate 57 G ( A.G59 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop,cap-donor,phosphate 58 G . A.G60 0.012 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,junction-loop,kissing-loop 59 A . A.A61 0.008 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,kissing-loop 60 C [ A.C62 0.006 pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop,junction-loop,kissing-loop,phosphate 61 G . A.G63 0.005 anti,~C3'-endo,BI,non-stack,non-pair-contact,hairpin-loop,internal-loop,kissing-loop 62 A . A.A64 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop,kissing-loop 63 A [ A.A65 0.012 pseudoknotted,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,internal-loop,kissing-loop 64 C [ A.C66 0.007 pseudoknotted,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,junction-loop,kissing-loop 65 A [ A.A67 0.009 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,kissing-loop 66 C ) A.C68 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,kissing-loop 67 C ) A.C69 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,hairpin-loop,A-minor 68 G ) A.G70 0.013 anti,~C2'-endo,BII,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate 69 A . A.A71 0.009 turn,syn,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,phosphate,splayed-apart 70 U . A.U72 0.008 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 71 A . A.A73 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-acceptor,phosphate,splayed-apart 72 U ] A.U74 0.014 pseudoknotted,turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart 73 G . A.G75 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart 74 C ( A.C76 0.008 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,phosphate 75 U ( A.U77 0.007 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 76 U ( A.U78 0.007 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 77 C ( A.C79 0.009 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor 78 G ( A.G80 0.010 k-turn,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet 79 G ( A.G81 0.009 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop 80 G . A.G82 0.010 k-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 81 G . A.G83 0.010 k-turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 82 A . A.A84 0.009 k-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 83 G ( A.G85 0.011 k-turn,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,multiplet,internal-loop,A-minor 84 C ( A.C86 0.007 k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem 85 U ( A.U87 0.008 k-turn,anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,hairpin-loop,junction-loop,kissing-loop,splayed-apart 86 G ] A.G88 0.010 pseudoknotted,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,junction-loop,kissing-loop,splayed-apart 87 U ] A.U89 0.006 pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,internal-loop,kissing-loop,phosphate 88 A . A.A90 0.005 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop,kissing-loop,cap-donor 89 A . A.A91 0.005 anti,~C3'-endo,non-pair-contact,hairpin-loop,internal-loop,kissing-loop,cap-acceptor 90 G ] A.G92 0.012 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop,junction-loop,kissing-loop 91 C . A.C93 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,kissing-loop 92 A . A.A94 0.008 anti,~C3'-endo,non-pair-contact,hairpin-loop,junction-loop,kissing-loop 93 A ) A.A95 0.009 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,junction-loop,kissing-loop 94 G ) A.G96 0.008 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 95 C ) A.C97 0.007 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,multiplet,internal-loop,A-minor 96 U . A.U98 0.005 k-turn,anti,~C3'-endo,non-pair-contact,internal-loop 97 U . A.U99 0.006 turn,k-turn,syn,~C2'-endo,non-pair-contact,internal-loop,splayed-apart 98 U . A.U100 0.003 turn,k-turn,anti,~C3'-endo,BII,non-stack,internal-loop,splayed-apart 99 G . A.G101 0.009 k-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,splayed-apart 100 A . A.A102 0.008 k-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,phosphate 101 U . A.U103 0.007 k-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 102 C ) A.C104 0.008 k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop 103 C ) A.C105 0.009 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet 104 G ) A.G106 0.013 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor 105 G ) A.G107 0.009 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 106 A ) A.A108 0.009 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 107 G ) A.G109 0.009 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end 108 A . A.A110 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 109 U . A.U111 0.006 anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate 110 U . A.U112 0.005 anti,~C3'-endo,BII,non-pair-contact,ss-non-loop,splayed-apart 111 U ) A.U113 0.010 ~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,splayed-apart 112 C ) A.C114 0.007 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 113 C ) A.C115 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,ribose-zipper 114 G . A.G116 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate 115 A . A.A117 0.011 turn,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop 116 A . A.A118 0.008 anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop 117 U . A.U119 0.009 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-donor,splayed-apart 118 G ( A.G120 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 119 G ( A.G121 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 120 G ( A.G122 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 121 G . A.G123 0.012 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate,splayed-apart 122 A . A.A124 0.006 turn,anti,~C2'-endo,non-stack,hairpin-loop,phosphate,splayed-apart 123 A . A.A125 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,A-minor,ribose-zipper,phosphate,splayed-apart 124 A . A.A126 0.010 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,ribose-zipper,cap-acceptor,splayed-apart 125 C ) A.C127 0.009 anti,~C3'-endo,BI,non-stack,canonical,helix-end,stem-end,coaxial-stack,hairpin-loop,splayed-apart 126 C ) A.C128 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 127 C ) A.C129 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 128 A ( A.A130 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 129 C ( A.C131 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 130 C ( A.C132 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 131 A ( A.A133 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 132 C ( A.C134 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 133 U ( A.U135 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 134 C ( A.C136 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 135 G . A.G137 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop 136 U . A.U138 0.005 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-acceptor 137 A . A.A139 0.008 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop 138 A . A.A140 0.007 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,A-minor,ribose-zipper,cap-donor,phosphate 139 U . A.U141 0.005 anti,~C3'-endo,non-pair-contact,hairpin-loop,ribose-zipper 140 G . A.G142 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop 141 G ) A.G143 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 142 A ) A.A144 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 143 G ) A.G145 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 144 U ) A.U146 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 145 G ) A.G147 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 146 G ) A.G148 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 147 U ) A.U149 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 148 A . A.A150 0.009 anti,~C3'-endo,BI,non-pair-contact,junction-loop,cap-acceptor,splayed-apart 149 U . A.U151 0.007 anti,~C3'-endo,BI,non-pair-contact,junction-loop 150 C ( A.C152 0.005 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,bulge,junction-loop 151 C ( A.C153 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,bulge 152 A ( A.A154 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 153 U ( A.U155 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 154 A ( A.A156 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 155 U ( A.U157 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 156 C ( A.C158 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop 157 U . A.U159 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop 158 G . A.G160 0.008 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,hairpin-loop,cap-acceptor 159 A . A.A161 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,A-minor,phosphate 160 A . A.A162 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,phosphate 161 U . A.U163 0.004 anti,~C2'-endo,BII,non-pair-contact,hairpin-loop 162 U . A.U164 0.004 anti,~C3'-endo,BI,non-stack,non-pair-contact,hairpin-loop 163 C . A.C165 0.005 anti,~C3'-endo,non-pair-contact,hairpin-loop 164 A . A.A166 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 165 U . A.U167 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,cap-donor,phosphate 166 A . A.A168 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate 167 G . A.G169 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop 168 G ) A.G170 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 169 A ) A.A171 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 170 U ) A.U172 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 171 A ) A.A173 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 172 U ) A.U174 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 173 G ) A.G175 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,bulge,splayed-apart 174 A . A.A176 0.005 turn,anti,~C3'-endo,BI,non-pair-contact,bulge,phosphate,splayed-apart 175 G ) A.G177 0.010 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,bulge,junction-loop,phosphate,splayed-apart 176 A . A.A178 0.019 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop 177 A . A.A179 0.010 anti,~C3'-endo,non-pair-contact,junction-loop,phosphate 178 G ) A.G180 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 179 G ) A.G181 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 180 C . A.C182 0.008 anti,~C2'-endo,non-pair-contact,junction-loop 181 A . A.A183 0.011 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,splayed-apart 182 G . A.G184 0.007 turn,anti,~C2'-endo,junction-loop,splayed-apart 183 A . A.A185 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,A-minor,ribose-zipper,splayed-apart 184 C ( A.C186 0.008 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,junction-loop,A-minor,ribose-zipper 185 C ( A.C187 0.009 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,bulge 186 C ( A.C188 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 187 G ( A.G189 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 188 G ( A.G190 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 189 G ( A.G191 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop 190 G . A.G192 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 191 A . A.A193 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,ribose-zipper,phosphate 192 A . A.A194 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper,phosphate 193 C . A.C195 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 194 U . A.U196 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 195 G ( A.G197 0.013 anti,~C3'-endo,BII,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop 196 A . A.A198 0.008 anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor,splayed-apart 197 A . A.A199 0.004 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart 198 A . A.A200 0.006 anti,~C3'-endo,BI,non-stack,non-pair-contact,hairpin-loop,cap-donor,splayed-apart 199 C . A.C201 0.005 anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart 200 A . A.A202 0.011 syn,~C3'-endo,BII,non-pair-contact,hairpin-loop,cap-donor,splayed-apart 201 U . A.U203 0.009 turn,syn,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart 202 C ) A.C204 0.005 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,internal-loop,cap-acceptor,splayed-apart 203 U . A.U205 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 204 A . A.A206 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 205 A . A.A207 0.011 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop 206 G . A.G208 0.007 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate 207 U . A.U209 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 208 A . A.A210 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 209 C ) A.C211 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop 210 C ) A.C212 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 211 C ) A.C213 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 212 G ) A.G214 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 213 G ) A.G215 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,bulge 214 A . A.A216 0.008 anti,~C3'-endo,BI,non-pair-contact,bulge 215 G ) A.G217 0.013 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,junction-loop,A-minor 216 G . A.G218 0.013 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-donor 217 A . A.A219 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop 218 A . A.A220 0.009 anti,~C3'-endo,non-pair-contact,junction-loop 219 G . A.G221 0.013 anti,~C3'-endo,BI,non-pair-contact,junction-loop 220 A . A.A222 0.012 anti,~C3'-endo,non-pair-contact,junction-loop,ribose-zipper 221 G . A.G223 0.010 anti,~C3'-endo,non-pair-contact,junction-loop,ribose-zipper 222 A . A.A224 0.010 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop 223 A . A.A225 0.010 ~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 224 A . A.A226 0.016 turn,~C2'-endo,non-pair-contact,junction-loop,A-minor,cap-acceptor,splayed-apart 225 G ( A.G227 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate,splayed-apart 226 C ( A.C228 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop 227 A . A.A229 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor 228 A . A.A230 0.007 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-acceptor 229 A . A.A231 0.018 ~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,phosphate 230 U . A.U232 0.007 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate 231 G ) A.G233 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,cap-donor,phosphate 232 C ) A.C234 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop 233 G . A.G235 0.006 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 234 A . A.A236 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,ribose-zipper,splayed-apart 235 U . A.U237 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper 236 U ( A.U238 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 237 C ( A.C239 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 238 C ( A.C240 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper 239 C ( A.C241 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor,ribose-zipper 240 U . A.U242 0.009 anti,~C3'-endo,non-pair-contact,internal-loop 241 G . A.G243 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 242 A . A.A244 0.008 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop 243 G . A.G245 0.008 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop 244 U . A.U246 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 245 A . A.A247 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 246 G ( A.G248 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 247 C ( A.C249 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 248 G . A.G250 0.008 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop 249 G . A.G251 0.020 turn,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart 250 C . A.C252 0.006 turn,anti,~C2'-endo,BII,non-pair-contact,hairpin-loop,splayed-apart 251 G . A.G253 0.007 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate 252 A . A.A254 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop 253 G ) A.G255 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 254 C ) A.C256 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 255 G . A.G257 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 256 A . A.A258 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 257 A . A.A259 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 258 A . A.A260 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 259 C . A.C261 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop 260 G ) A.G262 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor 261 G ) A.G263 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 262 G ) A.G264 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 263 A ) A.A265 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,ribose-zipper 264 U . A.U266 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,ribose-zipper 265 C . A.C267 0.005 anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 266 A . A.A268 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate,splayed-apart 267 G ( A.G269 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 268 C ( A.C270 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 269 C ( A.C271 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 270 C ( A.C272 0.010 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,junction-loop 271 A . A.A273 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate 272 A . A.A274 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor 273 A . A.A275 0.007 anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop 274 C ( A.C276 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 275 C ( A.C277 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 276 A ( A.A278 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 277 A ( A.A279 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 278 G . A.G280 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 279 A ( A.A281 0.017 ~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 280 G ( A.G282 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 281 G ( A.G283 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,phosphate 282 C . A.C284 0.006 anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor 283 U . A.U285 0.003 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate 284 U . A.U286 0.004 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,phosphate 285 G . A.G287 0.005 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,phosphate 286 C ) A.C288 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,cap-donor 287 C ) A.C289 0.009 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 288 U ) A.U290 0.009 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 289 C . A.C291 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 290 U ) A.U292 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 291 U ) A.U293 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 292 G ) A.G294 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 293 G ) A.G295 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 294 G . A.G296 0.013 anti,~C3'-endo,BI,non-pair-contact,junction-loop 295 G . A.G297 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 296 U . A.U298 0.006 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop 297 U . A.U299 0.005 anti,~C2'-endo,BI,non-stack,non-canonical,non-pair-contact,multiplet,junction-loop 298 G [ A.G300 0.011 pseudoknotted,anti,~C2'-endo,BII,isolated-canonical,non-pair-contact,helix,junction-loop 299 U . A.U301 0.004 turn,anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart 300 A ( A.A302 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,phosphate,splayed-apart 301 G ( A.G303 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 302 G ( A.G304 0.014 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,phosphate 303 A ( A.A305 0.007 ~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 304 C ( A.C306 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor,phosphate 305 A ( A.A307 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 306 C ( A.C308 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 307 U ( A.U309 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 308 C ( A.C310 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 309 U . A.U311 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop 310 G . A.G312 0.008 anti,~C3'-endo,BI,non-pair-contact,internal-loop 311 U . A.U313 0.003 turn,anti,~C2'-endo,non-pair-contact,internal-loop 312 A . A.A314 0.008 ~C2'-endo,non-pair-contact,internal-loop 313 C . A.C315 0.004 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop 314 G ( A.G316 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 315 G ( A.G317 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 316 A ( A.A318 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 317 G ( A.G319 0.007 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor 318 U . A.U320 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,bulge,splayed-apart 319 U . A.U321 0.004 anti,~C2'-endo,non-stack,non-pair-contact,bulge,splayed-apart 320 A . A.A322 0.011 anti,~C3'-endo,non-pair-contact,bulge,cap-acceptor,phosphate 321 C . A.C323 0.004 anti,~C3'-endo,non-pair-contact,bulge,cap-donor,splayed-apart 322 A . A.A324 0.006 anti,~C3'-endo,BI,non-pair-contact,bulge,splayed-apart 323 A . A.A325 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,bulge,A-minor 324 A . A.A326 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,bulge,A-minor,phosphate 325 G ( A.G327 0.012 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 326 G ( A.G328 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 327 A ( A.A329 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 328 A ( A.A330 0.018 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 329 C ( A.C331 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 330 G ( A.G332 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 331 A ( A.A333 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 332 G . A.G334 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 333 G ( A.G335 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 334 U ( A.U336 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 335 A . A.A337 0.019 ~C2'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop 336 G ( A.G338 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,phosphate 337 A ( A.A339 0.016 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 338 U ( A.U340 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 339 G . A.G341 0.013 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,junction-loop 340 A . A.A342 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 341 A . A.A343 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,junction-loop,A-minor,cap-acceptor,splayed-apart 342 G ( A.G344 0.014 anti,~C2'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,junction-loop,splayed-apart 343 A . A.A345 0.006 turn,anti,~C2'-endo,BI,non-stack,non-pair-contact,bulge,splayed-apart 344 G ( A.G346 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 345 G ( A.G347 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 346 U ( A.U348 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 347 C ( A.C349 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 348 U . A.U350 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop 349 G . A.G351 0.011 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,cap-acceptor,splayed-apart 350 G . A.G352 0.010 turn,u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 351 A . A.A353 0.009 u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate 352 A . A.A354 0.011 u-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate 353 A . A.A355 0.008 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 354 G ) A.G356 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,splayed-apart 355 G ) A.G357 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 356 C ) A.C358 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 357 C ) A.C359 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 358 C ) A.C360 0.009 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,bulge,junction-loop 359 G [ A.G361 0.012 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 360 C [ A.C362 0.008 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor 361 C ( A.C363 0.006 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop 362 A . A.A364 0.008 anti,~C3'-endo,BII,non-pair-contact,hairpin-loop,phosphate,splayed-apart 363 U . A.U365 0.005 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart 364 A . A.A366 0.010 anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate 365 G ) A.G367 0.012 turn,syn,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,splayed-apart 366 G . A.G368 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,splayed-apart 367 A ( A.A369 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 368 G ( A.G370 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 369 G ( A.G371 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop 370 U . A.U372 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,splayed-apart 371 A . A.A373 0.007 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,cap-acceptor,phosphate,splayed-apart 372 A . A.A374 0.015 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,cap-donor 373 C . A.C375 0.007 anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,junction-loop,splayed-apart 374 A . A.A376 0.010 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,cap-acceptor,splayed-apart 375 G ] A.G377 0.014 pseudoknotted,turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,A-minor,splayed-apart 376 C ] A.C378 0.007 pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,cap-donor,phosphate,splayed-apart 377 C ) A.C379 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,junction-loop,phosphate,splayed-apart 378 C ) A.C380 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 379 U ) A.U381 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 380 G . A.G382 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop 381 U . A.U383 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate 382 A . A.A384 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 383 G ) A.G385 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 384 U ) A.U386 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 385 C ) A.C387 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 386 A . A.A388 0.008 anti,~C3'-endo,non-pair-contact,internal-loop 387 A . A.A389 0.009 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,internal-loop 388 A . A.A390 0.011 turn,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,A-minor 389 A ) A.A391 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 390 C ) A.C392 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 391 U . A.U393 0.005 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 392 U ) A.U394 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 393 C ) A.C395 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 394 G ) A.G396 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 395 U ) A.U397 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 396 U ) A.U398 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 397 C ) A.C399 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 398 U ) A.U400 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 399 C ) A.C401 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor 400 U ) A.U402 0.006 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 401 C ) A.C403 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 402 C ) A.C404 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,splayed-apart 403 U . A.U405 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,splayed-apart 404 G ) A.G406 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 405 A ) A.A407 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 406 G ) A.G408 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 407 U ) A.U409 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 408 G ) A.G410 0.016 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge,A-minor,cap-acceptor 409 G . A.G411 0.006 anti,~C3'-endo,BII,non-canonical,non-pair-contact,multiplet,bulge,cap-donor,phosphate 410 A . A.A412 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,bulge,A-minor 411 U ) A.U413 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 412 C ) A.C414 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 413 C ) A.C415 0.006 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 414 U ) A.U416 0.008 anti,~C3'-endo,BII,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,splayed-apart 415 G ) A.G417 0.009 anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,phosphate,splayed-apart 416 A . A.A418 0.005 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart 417 G . A.G419 0.006 turn,~C2'-endo,non-canonical,non-pair-contact,ss-non-loop,phosphate 418 U . A.U420 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate 419 A . A.A421 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop 420 C ( A.C422 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end 421 G ( A.G423 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 422 G ( A.G424 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 423 C ( A.C425 0.011 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 424 G ( A.G426 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 425 G ( A.G427 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 426 A ( A.A428 0.009 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,phosphate 427 A ( A.A429 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 428 C . A.C430 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,A-minor 429 A . A.A431 0.006 turn,~C3'-endo,BI,non-pair-contact,hairpin-loop 430 C . A.C432 0.004 anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart 431 G . A.G433 0.003 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart 432 U . A.U434 0.003 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-donor,splayed-apart 433 G . A.G435 0.002 anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor 434 A . A.A436 0.004 turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 435 A . A.A437 0.018 ~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,hairpin-loop,A-minor 436 A . A.A438 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,A-minor 437 U ) A.U439 0.004 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop 438 U ) A.U440 0.007 anti,~C3'-endo,BI,non-stack,canonical,helix,stem,multiplet 439 C ) A.C441 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 440 C ) A.C442 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 441 G ) A.G443 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 442 U ) A.U444 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 443 C ) A.C445 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 444 G ) A.G446 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end 445 G . A.G447 0.009 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,ss-non-loop 446 A . A.A448 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate 447 A . A.A449 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate 448 U . A.U450 0.005 anti,~C2'-endo,BII,non-pair-contact,ss-non-loop 449 C ] A.C451 0.008 pseudoknotted,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,junction-loop,splayed-apart 450 C . A.C452 0.003 turn,anti,~C2'-endo,non-stack,junction-loop,splayed-apart 451 G ( A.G453 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 452 G ( A.G454 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 453 G ( A.G455 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor 454 A ( A.A456 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 455 G ( A.G457 0.016 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor,kissing-loop,splayed-apart 456 G . A.G458 0.008 anti,~C2'-endo,BII,non-pair-contact,hairpin-loop,kissing-loop,splayed-apart 457 A . A.A459 0.009 anti,~C3'-endo,non-pair-contact,hairpin-loop,kissing-loop,splayed-apart 458 C . A.C460 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,kissing-loop 459 C . A.C461 0.012 syn,~C3'-endo,non-pair-contact,hairpin-loop,kissing-loop 460 A . A.A462 0.014 anti,~C3'-endo,non-pair-contact,hairpin-loop,kissing-loop 461 U [ A.U463 0.008 pseudoknotted,anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop 462 C ) A.C464 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor,kissing-loop,phosphate 463 U ) A.U465 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 464 C ) A.C466 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 465 C ) A.C467 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,phosphate 466 C ) A.C468 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 467 A . A.A469 0.011 anti,~C3'-endo,non-pair-contact,junction-loop 468 A . A.A470 0.008 anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 469 G ) A.G471 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart 470 G ) A.G472 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 471 C ) A.C473 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 472 U . A.U474 0.012 syn,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 473 A . A.A475 0.011 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate,splayed-apart 474 A . A.A476 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,ribose-zipper 475 A . A.A477 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper 476 U . A.U478 0.008 syn,~C3'-endo,non-stack,non-canonical,junction-loop 477 A . A.A479 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop,A-minor,ribose-zipper 478 C ) A.C480 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,ribose-zipper 479 U ) A.U481 0.009 anti,~C2'-endo,BII,non-stack,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 480 C . A.C482 0.007 turn,syn,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,bulge 481 C ) A.C483 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 482 C ) A.C484 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 483 U ) A.U485 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 484 A ) A.A486 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 485 G ) A.G487 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 486 U ) A.U488 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 487 G ) A.G489 0.010 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 488 A . A.A490 0.010 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,bulge,A-minor,phosphate,splayed-apart 489 C ) A.C491 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 490 C ) A.C492 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,phosphate 491 G . A.G493 0.012 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,junction-loop,phosphate 492 A . A.A494 0.010 anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart 493 U . A.U495 0.011 turn,anti,~C2'-endo,non-stack,non-canonical,multiplet,junction-loop,splayed-apart 494 A . A.A496 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,splayed-apart 495 G . A.G497 0.016 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop 496 U . A.U498 0.011 anti,~C3'-endo,non-pair-contact,junction-loop 497 G . A.G499 0.013 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,junction-loop 498 A . A.A500 0.013 anti,~C3'-endo,non-pair-contact,junction-loop,cap-donor,splayed-apart 499 A . A.A501 0.011 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart 500 C . A.C502 0.008 anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 501 C . A.C503 0.006 turn,anti,~C2'-endo,BII,non-canonical,multiplet,junction-loop,splayed-apart 502 A . A.A504 0.011 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-acceptor,splayed-apart 503 G . A.G505 0.011 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,cap-acceptor 504 U . A.U506 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 505 A . A.A507 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 506 C ( A.C508 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 507 C ( A.C509 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 508 G . A.G510 0.014 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,cap-acceptor 509 U . A.U511 0.011 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 510 G . A.G512 0.014 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-donor,phosphate 511 A . A.A513 0.011 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,phosphate 512 G ) A.G514 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,phosphate 513 G ) A.G515 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 514 G . A.G516 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 515 A . A.A517 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 516 A . A.A518 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,phosphate 517 A . A.A519 0.009 anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 518 G ) A.G520 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 519 G ) A.G521 0.010 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 520 U . A.U522 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,splayed-apart 521 G . A.G523 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor 522 A . A.A524 0.010 turn,anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate 523 A . A.A525 0.013 anti,~C2'-endo,BI,non-pair-contact,junction-loop,cap-donor,phosphate 524 A . A.A526 0.011 turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,junction-loop,cap-acceptor 525 A . A.A527 0.015 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate 526 G ( A.G528 0.021 turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop,cap-donor,phosphate 527 C . A.C529 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart 528 A . A.A530 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor,cap-acceptor,phosphate,splayed-apart 529 C ( A.C531 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop,A-minor,cap-donor 530 C ( A.C532 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 531 C ( A.C533 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 532 C ( A.C534 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop 533 G . A.G535 0.010 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-acceptor 534 G . A.G536 0.010 turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 535 A . A.A537 0.009 anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate 536 A . A.A538 0.008 anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate 537 G ) A.G539 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop 538 G ) A.G540 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 539 G ) A.G541 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 540 G ) A.G542 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop,A-minor 541 A . A.A543 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 542 G . A.G544 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 543 U . A.U545 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop 544 G . A.G546 0.012 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor 545 A . A.A547 0.011 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate 546 A . A.A548 0.011 u-turn,anti,~C3'-endo,non-pair-contact,internal-loop,cap-donor,phosphate 547 A . A.A549 0.011 turn,u-turn,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart 548 G . A.G550 0.002 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 549 A . A.A551 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,splayed-apart 550 G . A.G552 0.010 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop 551 A . A.A553 0.011 anti,~C2'-endo,non-pair-contact,internal-loop,cap-donor,splayed-apart 552 U . A.U554 0.003 turn,~C2'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart 553 C ) A.C555 0.011 anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop,cap-acceptor,splayed-apart 554 C ) A.C556 0.007 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,A-minor,phosphate,splayed-apart 555 U . A.U557 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 556 G . A.G558 0.012 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,phosphate 557 A . A.A559 0.014 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 558 A . A.A560 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper 559 A . A.A561 0.015 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper 560 C ) A.C562 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 561 C ) A.C563 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 562 G ) A.G564 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 563 U ) A.U565 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 564 G ) A.G566 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 565 U ) A.U567 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 566 G ) A.G568 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 567 C ) A.C569 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 568 C ) A.C570 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 569 U ) A.U571 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack 570 A . A.A572 0.008 anti,~C3'-endo,BII,non-canonical,non-pair-contact,multiplet,ss-non-loop,A-minor,phosphate,splayed-apart 571 C . A.C573 0.009 turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,cap-acceptor,splayed-apart 572 A . A.A574 0.011 syn,~C3'-endo,BI,non-pair-contact,ss-non-loop 573 A . A.A575 0.009 ~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop 574 G . A.G576 0.008 syn,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,cap-acceptor,phosphate,splayed-apart 575 U ( A.U577 0.009 turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,phosphate,splayed-apart 576 A . A.A578 0.009 turn,syn,~C2'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,A-minor,phosphate 577 G ( A.G579 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,phosphate 578 U ( A.U580 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 579 C ( A.C581 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 580 A ( A.A582 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 581 G . A.G583 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 582 A . A.A584 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 583 G ( A.G585 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 584 C ( A.C586 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 585 C ( A.C587 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 586 C ( A.C588 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor 587 G . A.G589 0.008 anti,~C2'-endo,BII,non-pair-contact,hairpin-loop 588 U . A.U590 0.008 anti,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,cap-donor,splayed-apart 589 U < A.U591 0.006 pseudoknotted,turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart 590 A . A.A592 0.007 turn,syn,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart 591 A . A.A593 0.011 syn,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,phosphate,splayed-apart 592 C . A.C594 0.005 turn,anti,~C3'-endo,BII,hairpin-loop,phosphate,splayed-apart 593 G ) A.G595 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor,splayed-apart 594 G ) A.G596 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor 595 G ) A.G597 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 596 U ) A.U598 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 597 G . A.G599 0.013 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 598 A . A.A600 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 599 U ) A.U601 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 600 G ) A.G602 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 601 G ) A.G603 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 602 C ) A.C604 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 603 G . A.G605 0.010 anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart 604 U [ A.U606 0.008 pseudoknotted,anti,~C2'-endo,non-stack,isolated-canonical,non-pair-contact,multiplet,junction-loop,cap-acceptor,splayed-apart 605 G . A.G607 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart 606 C ( A.C608 0.007 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,A-minor,phosphate 607 C . A.C609 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 608 U ( A.U610 0.011 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop 609 U . A.U611 0.009 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 610 U . A.U612 0.007 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor,phosphate 611 U . A.U613 0.009 turn,u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop 612 G . A.G614 0.009 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,cap-donor,phosphate 613 U . A.U615 0.006 u-turn,anti,~C2'-endo,BI,non-pair-contact,hairpin-loop,phosphate 614 A . A.A616 0.010 turn,anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop 615 G . A.G617 0.009 anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate 616 A . A.A618 0.004 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart 617 A ) A.A619 0.006 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop,cap-donor,phosphate,splayed-apart 618 U . A.U620 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 619 G ) A.G621 0.009 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,A-minor 620 A . A.A622 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart 621 A ( A.A623 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor,splayed-apart 622 C ( A.C624 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper,phosphate 623 C ( A.C625 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper,phosphate 624 G ( A.G626 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 625 G ( A.G627 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 626 C ( A.C628 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 627 G . A.G629 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop 628 A . A.A630 0.012 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,phosphate 629 G . A.G631 0.020 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,phosphate,splayed-apart 630 U . A.U632 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 631 U ( A.U633 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 632 A ( A.A634 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 633 C ( A.C635 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 634 G ( A.G636 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 635 A ( A.A637 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 636 U ( A.U638 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 637 C ( A.C639 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 638 U . A.U640 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 639 C ( A.C641 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 640 G ( A.G642 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 641 U ( A.U643 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 642 G ( A.G644 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 643 C ( A.C645 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop 644 A . A.A646 0.010 anti,~C3'-endo,BI,non-pair-contact,junction-loop 645 A . A.A647 0.007 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate 646 G ( A.G648 0.022 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 647 G ( A.G649 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 648 U ( A.U650 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate 649 U . A.U651 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 650 A . A.A652 0.015 anti,~C3'-endo,non-pair-contact,internal-loop,A-minor,ribose-zipper,phosphate 651 A . A.A653 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper 652 G ( A.G654 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 653 C ( A.C655 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 654 A ( A.A656 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 655 G . A.G657 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 656 A . A.A658 0.010 syn,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart 657 A . A.A659 0.006 turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,splayed-apart 658 G . A.G660 0.008 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 659 A . A.A661 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop 660 U ) A.U662 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 661 G ) A.G663 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 662 C ) A.C664 0.011 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 663 G . A.G665 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 664 G . A.G666 0.014 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop 665 A . A.A667 0.016 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor 666 G ) A.G668 0.010 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,cap-donor 667 C ) A.C669 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 668 C ) A.C670 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 669 G . A.G671 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop 670 C . A.C672 0.007 anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 671 A . A.A673 0.008 anti,~C2'-endo,BII,non-pair-contact,junction-loop,splayed-apart 672 G ( A.G674 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 673 C ( A.C675 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,phosphate 674 G . A.G676 0.009 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 675 A . A.A677 0.008 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 676 A . A.A678 0.008 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate 677 A . A.A679 0.007 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 678 G ) A.G680 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 679 C ) A.C681 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 680 G . A.G682 0.009 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate 681 A . A.A683 0.008 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate 682 G ( A.G684 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 683 U ( A.U685 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 684 C ( A.C686 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 685 U ( A.U687 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop 686 G . A.G688 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 687 A . A.A689 0.008 turn,syn,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,splayed-apart 688 A . A.A690 0.008 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart 689 U . A.U691 0.005 turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 690 A . A.A692 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 691 G ) A.G693 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 692 G ) A.G694 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 693 G ) A.G695 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 694 C ) A.C696 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 695 G . A.G697 0.014 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop 696 C . A.C698 0.006 anti,~C3'-endo,non-pair-contact,junction-loop 697 A . A.A699 0.003 anti,~C3'-endo,non-pair-contact,junction-loop,phosphate 698 U . A.U700 0.003 turn,anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 699 G . A.G701 0.006 anti,~C3'-endo,non-stack,junction-loop,splayed-apart 700 A . A.A702 0.008 anti,~C2'-endo,BII,non-pair-contact,junction-loop 701 G ) A.G703 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop 702 U ) A.U704 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 703 A ) A.A705 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 704 C ) A.C706 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 705 G ) A.G707 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 706 U . A.U708 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 707 G ) A.G709 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 708 G ) A.G710 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 709 U ) A.U711 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 710 C ) A.C712 0.008 anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack 711 G ) A.G713 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 712 U ) A.U714 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 713 A ) A.A715 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 714 G . A.G716 0.017 turn,~C3'-endo,non-pair-contact,junction-loop,cap-donor,cap-acceptor,phosphate 715 A . A.A717 0.012 ~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 716 C ( A.C718 0.011 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop,A-minor,cap-donor,phosphate,splayed-apart 717 C ( A.C719 0.017 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,multiplet,internal-loop,A-minor,phosphate 718 C . A.C720 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 719 G ( A.G721 0.008 anti,~C3'-endo,non-stack,isolated-canonical,non-pair-contact,helix,internal-loop,phosphate 720 A . A.A722 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,ribose-zipper 721 A . A.A723 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,ribose-zipper,phosphate 722 A . A.A724 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 723 C ( A.C725 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,ribose-zipper 724 C ( A.C726 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,ribose-zipper 725 A ( A.A727 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 726 G ( A.G728 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 727 G ( A.G729 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 728 U ( A.U730 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop 729 G . A.G731 0.017 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate 730 A . A.A732 0.020 turn,syn,~C2'-endo,BII,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 731 U . A.U733 0.008 turn,anti,~C2'-endo,non-stack,junction-loop,phosphate,splayed-apart 732 C . A.C734 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 733 U . A.U735 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 734 A ( A.A736 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 735 C ( A.C737 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 736 C ( A.C738 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 737 C ( A.C739 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor,ribose-zipper,phosphate 738 A ( A.A740 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor,ribose-zipper,phosphate 739 U ( A.U741 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 740 G ( A.G742 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 741 U ( A.U743 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 742 C ( A.C744 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,bulge 743 C ( A.C745 0.007 anti,~C3'-endo,BII,isolated-canonical,non-pair-contact,helix-end,bulge,junction-loop,splayed-apart 744 A . A.A746 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 745 G ( A.G747 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor 746 G ( A.G748 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 747 G ( A.G749 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 748 U ( A.U750 0.010 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,internal-loop 749 G . A.G751 0.011 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop 750 A . A.A752 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 751 A . A.A753 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 752 G ( A.G754 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 753 U ( A.U755 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 754 U ( A.U756 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 755 C ( A.C757 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 756 A ( A.A758 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 757 G ( A.G759 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 758 G . A.G760 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop 759 U . A.U761 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop,splayed-apart 760 A . A.A762 0.009 turn,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor,splayed-apart 761 A . A.A763 0.004 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor 762 C . A.C764 0.007 anti,~C3'-endo,non-pair-contact,hairpin-loop 763 A . A.A765 0.007 syn,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 764 C ) A.C766 0.007 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 765 U ) A.U767 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 766 G ) A.G768 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 767 A ) A.A769 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 768 A ) A.A770 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 769 U ) A.U771 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 770 G . A.G772 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 771 G . A.G773 0.012 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop 772 A . A.A774 0.013 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 773 G ) A.G775 0.012 anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,bulge,internal-loop,phosphate,splayed-apart 774 G [ A.G776 0.013 pseudoknotted,turn,syn,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,multiplet,bulge,phosphate,splayed-apart 775 C ) A.C777 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 776 C ) A.C778 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 777 C ) A.C779 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor 778 G . A.G780 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 779 A . A.A781 0.008 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate 780 A . A.A782 0.012 anti,~C3'-endo,BI,non-pair-contact,junction-loop,cap-acceptor,phosphate 781 C ( A.C783 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor 782 C ( A.C784 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 783 C ( A.C785 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 784 A . A.A786 0.010 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,bulge,phosphate 785 C ( A.C787 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 786 G ( A.G788 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 787 C ( A.C789 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 788 A ( A.A790 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 789 C ( A.C791 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor 790 G . A.G792 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop 791 U . A.U793 0.006 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 792 U . A.U794 0.004 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,splayed-apart 793 G . A.G795 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 794 A . A.A796 0.006 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor 795 A . A.A797 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart 796 A . A.A798 0.007 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart 797 A A A.A799 0.007 pseudoknotted,anti,~C2'-endo,isolated-canonical,non-pair-contact,hairpin-loop,splayed-apart 798 G ) A.G800 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor 799 U ) A.U801 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 800 G ) A.G802 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 801 C ) A.C803 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 802 G ) A.G804 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 803 G ) A.G805 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 804 G ) A.G806 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 805 G ) A.G807 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 806 A . A.A808 0.014 anti,~C3'-endo,BII,non-pair-contact,junction-loop,splayed-apart 807 U . A.U809 0.008 turn,anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor,splayed-apart 808 G ) A.G810 0.011 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,bulge,junction-loop,cap-acceptor,splayed-apart 809 A . A.A811 0.012 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,bulge,splayed-apart 810 G ) A.G812 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,bulge,splayed-apart 811 G ) A.G813 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 812 U ) A.U814 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 813 G ) A.G815 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 814 U ) A.U816 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor 815 G ) A.G817 0.009 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,A-minor 816 G ) A.G818 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 817 G ) A.G819 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 818 U ) A.U820 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop 819 A . A.A821 0.013 ~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,junction-loop 820 G ( A.G822 0.014 anti,~C2'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,junction-loop,phosphate,splayed-apart 821 G . A.G823 0.004 turn,syn,~C3'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 822 G ( A.G824 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,splayed-apart 823 G ( A.G825 0.016 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 824 U ( A.U826 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate 825 G . A.G827 0.011 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 826 A . A.A828 0.007 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-acceptor,splayed-apart 827 A . A.A829 0.010 anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 828 A . A.A830 0.014 turn,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 829 U . A.U831 0.004 turn,syn,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,splayed-apart 830 G ) A.G832 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate,splayed-apart 831 C ) A.C833 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 832 C ) A.C834 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,splayed-apart 833 A . A.A835 0.013 anti,~C2'-endo,BII,non-pair-contact,internal-loop,phosphate,splayed-apart 834 A . A.A836 0.006 turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart 835 U . A.U837 0.005 anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 836 C ) A.C838 0.009 anti,~C2'-endo,BII,non-stack,isolated-canonical,non-pair-contact,helix,multiplet,internal-loop,junction-loop,splayed-apart 837 G . A.G839 0.006 turn,anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor,splayed-apart 838 A . A.A840 0.005 ~C2'-endo,non-stack,non-canonical,junction-loop,cap-acceptor,splayed-apart 839 A ) A.A841 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,splayed-apart 840 C ) A.C842 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 841 C ) A.C843 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 842 U ) A.U844 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 843 G ) A.G845 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 844 G ) A.G846 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 845 A . A.A847 0.011 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor,splayed-apart 846 G . A.G848 0.010 turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 847 A . A.A849 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-donor,splayed-apart 848 U . A.U850 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop 849 A . A.A851 0.009 anti,~C3'-endo,non-pair-contact,internal-loop 850 G . A.G852 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop 851 C ) A.C853 0.006 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,phosphate 852 U . A.U854 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 853 G ) A.G855 0.012 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,internal-loop,A-minor 854 G ) A.G856 0.012 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop,A-minor,phosphate 855 U . A.U857 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop 856 U . A.U858 0.010 syn,~C2'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart 857 C ( A.C859 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,ribose-zipper,splayed-apart 858 U ( A.U860 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,ribose-zipper,phosphate 859 C ( A.C861 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 860 U ( A.U862 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 861 C ( A.C863 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 862 C ( A.C864 0.022 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 863 G . A.G865 0.017 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper 864 A . A.A866 0.013 anti,~C3'-endo,BI,non-pair-contact,junction-loop,A-minor,ribose-zipper,phosphate 865 A . A.A867 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop,phosphate 866 A . A.A868 0.010 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 867 U ( A.U869 0.010 anti,~C2'-endo,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 868 A ( A.A870 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 869 G ( A.G871 0.015 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 870 C ( A.C872 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,cap-donor 871 U . A.U873 0.006 anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 872 U . A.U874 0.002 turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,hairpin-loop,splayed-apart 873 U . A.U875 0.006 ~C3'-endo,BI,non-pair-contact,hairpin-loop 874 A . A.A876 0.004 ~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 875 G . A.G877 0.003 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 876 G . A.G878 0.008 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 877 G ) A.G879 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 878 C ) A.C880 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 879 U ) A.U881 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 880 A ) A.A882 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 881 G ( A.G883 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 882 C ( A.C884 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor,ribose-zipper 883 C ( A.C885 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,ribose-zipper 884 U ( A.U886 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 885 C ( A.C887 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 886 A ( A.A888 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 887 A ( A.A889 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 888 G ( A.G890 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 889 G ( A.G891 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 890 U . A.U892 0.005 anti,~C3'-endo,BI,non-stack,non-canonical,multiplet,internal-loop 891 A . A.A893 0.003 turn,anti,~C2'-endo,non-pair-contact,internal-loop,cap-donor 892 A . A.A894 0.010 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-acceptor 893 G ( A.G895 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 894 A ( A.A896 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 895 G ( A.G897 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 896 U ( A.U898 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 897 C ( A.C899 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 898 U . A.U900 0.013 ~C2'-endo,non-canonical,non-pair-contact,internal-loop,cap-donor 899 U . A.U901 0.012 ~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor 900 G . A.G902 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 901 G . A.G903 0.016 syn,~C2'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 902 A . A.A904 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 903 G . A.G905 0.008 anti,~C2'-endo,BII,non-pair-contact,internal-loop 904 G . A.G906 0.007 anti,~C2'-endo,non-pair-contact,internal-loop 905 U . A.U907 0.006 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 906 A . A.A908 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper 907 G ( A.G909 0.009 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,ribose-zipper 908 A . A.A910 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 909 G ( A.G911 0.007 anti,~C2'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor 910 C . A.C912 0.008 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,cap-donor,phosphate 911 A . A.A913 0.016 turn,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,cap-acceptor 912 C . A.C914 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop 913 U ( A.U915 0.007 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 914 G ( A.G916 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 915 A ( A.A917 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-acceptor 916 U . A.U918 0.014 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor 917 U ( A.U919 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 918 G ( A.G920 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 919 G . A.G921 0.008 anti,~C3'-endo,non-pair-contact,ss-non-loop 920 A . A.A922 0.004 break,anti,~C3'-endo,non-pair-contact,ss-non-loop 921 C . A.C945 0.004 anti,~C3'-endo,BI,non-stack,non-pair-contact,ss-non-loop 922 G . A.G946 0.007 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 923 A . A.A947 0.004 anti,~C3'-endo,BII,non-pair-contact,ss-non-loop 924 A . A.A948 0.007 syn,~C3'-endo,non-pair-contact,ss-non-loop 925 U . A.U949 0.004 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 926 U . A.U950 0.007 anti,~C3'-endo,BII,non-pair-contact,ss-non-loop 927 C ) A.C951 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 928 A ) A.A952 0.007 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 929 G . A.G953 0.008 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 930 U ) A.U954 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 931 C ) A.C955 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 932 A ) A.A956 0.014 anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate,splayed-apart 933 A . A.A957 0.011 turn,anti,~C2'-endo,non-pair-contact,internal-loop,cap-acceptor,phosphate,splayed-apart 934 A . A.A958 0.006 syn,~C3'-endo,non-stack,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 935 C ) A.C959 0.008 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,phosphate,splayed-apart 936 U . A.U960 0.005 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop 937 C . A.C961 0.007 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 938 C ) A.C962 0.004 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop 939 G . A.G963 0.008 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 940 A . A.A964 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 941 A . A.A965 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop 942 U . A.U966 0.006 anti,~C3'-endo,BI,non-pair-contact,internal-loop 943 G . A.G967 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop 944 C . A.C968 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 945 C . A.C969 0.002 syn,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 946 A . A.A970 0.002 ~C2'-endo,non-pair-contact,internal-loop 947 A . A.A971 0.002 ~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop 948 U . A.U972 0.003 anti,~C2'-endo,BI,non-pair-contact,internal-loop,phosphate 949 G ) A.G973 0.003 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 950 A ) A.A974 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 951 C ) A.C975 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 952 U ) A.U976 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 953 U ) A.U977 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 954 A . A.A978 0.008 anti,~C2'-endo,BII,non-pair-contact,internal-loop,phosphate 955 U . A.U979 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 956 C ) A.C980 0.008 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 957 C ) A.C981 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 958 U ) A.U982 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 959 U ) A.U983 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 960 G ) A.G984 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 961 G ) A.G985 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 962 G ) A.G986 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 963 A . A.A987 0.008 anti,~C3'-endo,BI,non-pair-contact,bulge,ribose-zipper,phosphate 964 G ) A.G988 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor,ribose-zipper 965 U ) A.U989 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 966 C . A.C990 0.008 anti,~C3'-endo,non-stack,non-pair-contact,junction-loop,splayed-apart 967 A . A.A991 0.005 turn,anti,~C2'-endo,BI,non-stack,non-pair-contact,junction-loop,splayed-apart 968 G ( A.G992 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,phosphate,splayed-apart 969 A ( A.A993 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 970 C ( A.C994 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 971 U ( A.U995 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 972 G ( A.G996 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 973 C ( A.C997 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 974 G ( A.G998 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 975 A . A.A999 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 976 G ( A.G1000 0.010 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 977 U ( A.U1001 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 978 G . A.G1002 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 979 A . A.A1003 0.003 turn,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 980 U . A.U1004 0.002 turn,anti,~C3'-endo,BII,non-stack,non-pair-contact,hairpin-loop,splayed-apart 981 A . A.A1005 0.004 anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart 982 A . A.A1006 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 983 G . A.G1007 0.004 turn,~C3'-endo,BII,non-stack,non-pair-contact,hairpin-loop,splayed-apart 984 A ) A.A1008 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,splayed-apart 985 U ) A.U1009 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 986 C . A.C1010 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 987 C ) A.C1011 0.008 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 988 G ) A.G1012 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 989 U ) A.U1013 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 990 A ) A.A1014 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 991 G ) A.G1015 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 992 U ) A.U1016 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 993 C ) A.C1017 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,phosphate 994 G . A.G1018 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate 995 A . A.A1019 0.011 anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,cap-donor,phosphate 996 A . A.A1020 0.009 ~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,junction-loop 997 A . A.A1021 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 998 G ( A.G1022 0.012 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop,A-minor 999 G ( A.G1023 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,multiplet,A-minor 1000 G ( A.G1024 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop 1001 A . A.A1025 0.010 anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart 1002 A . A.A1026 0.014 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,ribose-zipper,phosphate,splayed-apart 1003 A . A.A1027 0.008 anti,~C3'-endo,non-pair-contact,hairpin-loop,A-minor,ribose-zipper 1004 C . A.C1028 0.007 syn,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart 1005 A . A.A1029 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,A-minor,splayed-apart 1006 G . A.G1030 0.010 syn,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,phosphate,splayed-apart 1007 C ) A.C1031 0.009 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,phosphate,splayed-apart 1008 C ) A.C1032 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,multiplet,A-minor,ribose-zipper 1009 C ) A.C1033 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop,A-minor,ribose-zipper 1010 A . A.A1034 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,phosphate 1011 G . A.G1035 0.016 anti,~C2'-endo,non-canonical,non-pair-contact,junction-loop,phosphate 1012 A . A.A1036 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate,splayed-apart 1013 C ( A.C1037 0.008 turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1014 C ( A.C1038 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1015 G ( A.G1039 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1016 C ( A.C1040 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 1017 C . A.C1041 0.008 turn,anti,~C2'-endo,bulge,phosphate,splayed-apart 1018 A ( A.A1042 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 1019 G ( A.G1043 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1020 C ( A.C1044 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1021 U . A.U1045 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 1022 A . A.A1046 0.012 anti,~C3'-endo,BI,non-pair-contact,internal-loop,A-minor,ribose-zipper,phosphate 1023 A . A.A1047 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,ribose-zipper 1024 G ( A.G1048 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 1025 G ( A.G1049 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1026 U ( A.U1050 0.009 anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor,splayed-apart 1027 C [ A.C1051 0.009 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop,cap-donor,splayed-apart 1028 C [ A.C1052 0.013 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1029 C [ A.C1053 0.007 pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,junction-loop,phosphate 1030 A . A.A1054 0.009 anti,~C2'-endo,BII,non-pair-contact,junction-loop 1031 A . A.A1055 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,phosphate 1032 A . A.A1056 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor,cap-acceptor,phosphate 1033 G ( A.G1057 0.010 ~C2'-endo,isolated-canonical,non-pair-contact,helix,bulge,junction-loop,phosphate,splayed-apart 1034 U . A.U1058 0.007 turn,anti,~C2'-endo,non-stack,non-pair-contact,bulge,cap-acceptor,phosphate,splayed-apart 1035 A ( A.A1059 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 1036 U ( A.U1060 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1037 A ( A.A1061 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1038 C ( A.C1062 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack 1039 G ( A.G1063 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1040 U ( A.U1064 0.008 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1041 U . A.U1065 0.005 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 1042 A . A.A1066 0.007 turn,anti,~C2'-endo,non-pair-contact,internal-loop,cap-donor 1043 A . A.A1067 0.013 ~C3'-endo,non-canonical,non-pair-contact,internal-loop,cap-acceptor 1044 G . A.G1068 0.009 turn,anti,~C2'-endo,non-pair-contact,internal-loop 1045 U . A.U1069 0.008 turn,anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 1046 G ( A.G1070 0.008 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop 1047 G . A.G1071 0.013 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,cap-acceptor,splayed-apart 1048 A . A.A1072 0.007 anti,~C2'-endo,BI,non-pair-contact,junction-loop,phosphate,splayed-apart 1049 A . A.A1073 0.008 syn,~C2'-endo,BII,non-pair-contact,junction-loop 1050 A . A.A1074 0.004 anti,~C3'-endo,BI,non-stack,non-pair-contact,junction-loop 1051 A . A.A1075 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,A-minor,phosphate 1052 G ( A.G1076 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,phosphate 1053 G ( A.G1077 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1054 A . A.A1078 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 1055 U . A.U1079 0.005 turn,anti,~C2'-endo,BI,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart 1056 G ( A.G1080 0.020 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart 1057 U . A.U1081 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1058 G ( A.G1082 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1059 G ( A.G1083 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1060 A . A.A1084 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor 1061 G . A.G1085 0.018 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor 1062 U . A.U1086 0.007 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix,internal-loop 1063 U . A.U1087 0.008 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix,internal-loop 1064 G ( A.G1088 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1065 C ( A.C1089 0.008 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 1066 U . A.U1090 0.002 anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop,splayed-apart 1067 U . A.U1091 0.002 turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,splayed-apart 1068 A . A.A1092 0.004 turn,~C2'-endo,BI,non-stack,non-pair-contact,ss-non-loop,splayed-apart 1069 G . A.G1093 0.005 anti,~C3'-endo,BII,non-pair-contact,ss-non-loop,cap-acceptor,phosphate,splayed-apart 1070 A . A.A1094 0.004 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,phosphate 1071 C { A.C1095 0.004 pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact 1072 A . A.A1096 0.012 anti,~C3'-endo,non-pair-contact,ss-non-loop 1073 A . A.A1097 0.006 anti,~C2'-endo,non-canonical,non-pair-contact,ss-non-loop 1074 C . A.C1098 0.009 break,~C3'-endo,non-stack,non-canonical,ss-non-loop 1075 G . A.G1153 0.003 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 1076 U . A.U1154 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,ss-non-loop,phosphate 1077 C . A.C1155 0.006 ~C3'-endo,non-pair-contact,ss-non-loop,cap-donor,cap-acceptor,phosphate 1078 G . A.G1156 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop 1079 A . A.A1157 0.015 ~C2'-endo,BI,non-pair-contact,ss-non-loop,phosphate 1080 G ) A.G1158 0.010 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,phosphate 1081 U ) A.U1159 0.003 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1082 G . A.G1160 0.013 anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate 1083 A . A.A1161 0.019 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1084 C . A.C1162 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1085 U . A.U1163 0.005 anti,~C3'-endo,non-pair-contact,internal-loop 1086 C ) A.C1164 0.007 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1087 U ) A.U1165 0.006 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1088 G . A.G1166 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1089 C ) A.C1167 0.011 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop 1090 G . A.G1168 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1091 C ) A.C1169 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1092 C ) A.C1170 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor 1093 G . A.G1171 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,phosphate 1094 A . A.A1172 0.008 anti,~C2'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart 1095 A . A.A1173 0.004 anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,splayed-apart 1096 A . A.A1174 0.005 ~C2'-endo,BII,non-pair-contact,junction-loop,A-minor,cap-donor,phosphate 1097 A . A.A1175 0.006 anti,~C3'-endo,BII,non-pair-contact,junction-loop,A-minor,cap-acceptor,splayed-apart 1098 U . A.U1176 0.005 anti,~C2'-endo,non-stack,junction-loop,cap-acceptor,splayed-apart 1099 G . A.G1177 0.010 anti,~C2'-endo,non-canonical,non-pair-contact,junction-loop,phosphate 1100 U . A.U1178 0.006 turn,anti,~C2'-endo,non-canonical,non-pair-contact,junction-loop 1101 A . A.A1179 0.006 anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,junction-loop,splayed-apart 1102 C . A.C1180 0.005 anti,~C2'-endo,BII,non-pair-contact,junction-loop,splayed-apart 1103 C . A.C1181 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,cap-donor,splayed-apart 1104 G ] A.G1182 0.009 pseudoknotted,turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 1105 G ] A.G1183 0.009 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1106 G ] A.G1184 0.008 pseudoknotted,anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,junction-loop 1107 G . A.G1185 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,junction-loop,phosphate 1108 C ) A.C1186 0.008 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop,junction-loop,phosphate 1109 U . A.U1187 0.008 turn,anti,~C2'-endo,non-canonical,non-pair-contact,internal-loop,phosphate 1110 A . A.A1188 0.012 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,internal-loop,splayed-apart 1111 A . A.A1189 0.010 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate,splayed-apart 1112 A ) A.A1190 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 1113 C ) A.C1191 0.006 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack 1114 G ) A.G1192 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1115 U ) A.U1193 0.008 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack 1116 A ) A.A1194 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1117 U ) A.U1195 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1118 C ) A.C1196 0.008 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,junction-loop 1119 A ) A.A1197 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1120 C ) A.C1198 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1121 C ) A.C1199 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,phosphate 1122 G . A.G1200 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 1123 A . A.A1201 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,splayed-apart 1124 A . A.A1202 0.009 turn,anti,~C2'-endo,internal-loop,splayed-apart 1125 G ) A.G1203 0.025 ~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 1126 C ) A.C1204 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1127 U ) A.U1205 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 1128 G ) A.G1206 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1129 C ) A.C1207 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1130 G ) A.G1208 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1131 G ) A.G1209 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1132 A ( A.A1210 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1133 C ( A.C1211 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1134 U ( A.U1212 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1135 G ( A.G1213 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1136 U ( A.U1214 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1137 U ( A.U1215 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1138 C ( A.C1216 0.004 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,cap-acceptor 1139 U . A.U1217 0.004 turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor 1140 U . A.U1218 0.005 anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop 1141 C . A.C1219 0.005 turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1142 G ) A.G1220 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,cap-acceptor,splayed-apart 1143 A ) A.A1221 0.018 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack 1144 A ) A.A1222 0.023 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1145 C ) A.C1223 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1146 A ) A.A1224 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1147 G ) A.G1225 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1148 U ) A.U1226 0.008 anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1149 G . A.G1227 0.012 anti,~C3'-endo,BI,non-pair-contact,junction-loop,splayed-apart 1150 G . A.G1228 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 1151 U . A.U1229 0.009 anti,~C3'-endo,BI,non-pair-contact,junction-loop,cap-acceptor,phosphate 1152 A . A.A1230 0.014 ~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper 1153 G ) A.G1231 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,ribose-zipper,phosphate 1154 G ) A.G1232 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1155 A ) A.A1233 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1156 G ) A.G1234 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1157 A ) A.A1235 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1158 G ) A.G1236 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor 1159 C ( A.C1237 0.008 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop 1160 G . A.G1238 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1161 U ( A.U1239 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1162 U ( A.U1240 0.009 anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack 1163 C ( A.C1241 0.008 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1164 U ( A.U1242 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1165 A ( A.A1243 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1166 A . A.A1244 0.017 syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1167 G . A.G1245 0.021 syn,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop 1168 G . A.G1246 0.019 syn,~C2'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1169 G ( A.G1247 0.010 k-turn,anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1170 C ( A.C1248 0.009 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,phosphate 1171 U . A.U1249 0.009 k-turn,anti,~C3'-endo,BII,non-canonical,non-pair-contact,internal-loop 1172 G . A.G1250 0.015 turn,k-turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 1173 U . A.U1251 0.007 turn,k-turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart 1174 G . A.G1252 0.012 k-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate,splayed-apart 1175 A . A.A1253 0.008 k-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1176 A . A.A1254 0.012 k-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,A-minor 1177 G ( A.G1255 0.011 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1178 C ( A.C1256 0.008 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1179 C ( A.C1257 0.007 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1180 A ( A.A1258 0.010 k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1181 G ( A.G1259 0.008 k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 1182 A . A.A1260 0.007 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor,cap-acceptor,splayed-apart 1183 C ( A.C1261 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 1184 C ( A.C1262 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 1185 G . A.G1263 0.011 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-acceptor,splayed-apart 1186 G . A.G1264 0.015 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 1187 A . A.A1265 0.010 u-turn,~C3'-endo,BI,non-pair-contact,hairpin-loop,ribose-zipper,cap-donor,phosphate 1188 A . A.A1266 0.008 u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,A-minor,ribose-zipper,phosphate 1189 G ) A.G1267 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 1190 G ) A.G1268 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1191 A > A.A1269 0.010 pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop 1192 C ) A.C1270 0.008 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1193 U ) A.U1271 0.009 k-turn,anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack 1194 G ) A.G1272 0.010 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1195 G ) A.G1273 0.011 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1196 U ) A.U1274 0.010 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1197 G . A.G1275 0.013 k-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1198 G . A.G1276 0.012 k-turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1199 A . A.A1277 0.011 k-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 1200 G ) A.G1278 0.007 k-turn,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,phosphate 1201 C ) A.C1279 0.006 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1202 G . A.G1280 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1203 C . A.C1281 0.009 syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1204 U . A.U1282 0.007 anti,~C3'-endo,BI,non-stack,non-canonical,helix,internal-loop 1205 U ) A.U1283 0.008 anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end,coaxial-stack,internal-loop 1206 A ) A.A1284 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1207 G ) A.G1285 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1208 A ) A.A1286 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1209 A ) A.A1287 0.010 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 1210 G . A.G1288 0.010 turn,anti,~C2'-endo,internal-loop,phosphate,splayed-apart 1211 U . A.U1289 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 1212 G ) A.G1290 0.012 anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,phosphate,splayed-apart 1213 A . A.A1291 0.020 anti,~C2'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart 1214 G . A.G1292 0.011 ~C2'-endo,BII,non-pair-contact,junction-loop,cap-donor,phosphate,splayed-apart 1215 A . A.A1293 0.009 ~C2'-endo,non-pair-contact,junction-loop,A-minor,cap-acceptor,phosphate,splayed-apart 1216 A . A.A1294 0.012 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,A-minor,phosphate,splayed-apart 1217 U . A.U1295 0.005 turn,anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 1218 G ) A.G1296 0.016 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1219 C ) A.C1297 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1220 C ) A.C1298 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1221 G ) A.G1299 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 1222 G ) A.G1300 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 1223 U ) A.U1301 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1224 A ( A.A1302 0.015 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop 1225 U . A.U1303 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1226 G . A.G1304 0.016 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1227 A . A.A1305 0.015 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate 1228 G . A.G1306 0.011 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate 1229 U . A.U1307 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 1230 A . A.A1308 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1231 G ( A.G1309 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 1232 C ( A.C1310 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1233 G . A.G1311 0.010 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,junction-loop,splayed-apart 1234 A . A.A1312 0.005 anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 1235 A . A.A1313 0.006 anti,~C2'-endo,BI,non-pair-contact,junction-loop,splayed-apart 1236 A . A.A1314 0.008 anti,~C2'-endo,BII,non-stack,non-pair-contact,junction-loop,A-minor,splayed-apart 1237 G ( A.G1315 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1238 A ( A.A1316 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1239 G ( A.G1317 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1240 G ( A.G1318 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1241 G ( A.G1319 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1242 G ( A.G1320 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1243 U . A.U1321 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop 1244 G . A.G1322 0.012 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor,splayed-apart 1245 A . A.A1323 0.010 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 1246 G . A.G1324 0.011 u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate 1247 A . A.A1325 0.009 u-turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart 1248 A . A.A1326 0.012 turn,anti,~C2'-endo,BI,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1249 U . A.U1327 0.010 syn,~C2'-endo,non-pair-contact,hairpin-loop,phosphate 1250 C ) A.C1328 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1251 C ) A.C1329 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1252 C ) A.C1330 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1253 C ) A.C1331 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1254 U ) A.U1332 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1255 C ) A.C1333 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1256 C ( A.C1334 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor 1257 A ( A.A1335 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1258 C ( A.C1336 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1259 C ( A.C1337 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1260 G . A.G1338 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 1261 A . A.A1339 0.008 turn,anti,~C2'-endo,non-pair-contact,junction-loop,cap-acceptor,phosphate,splayed-apart 1262 A . A.A1340 0.012 syn,~C2'-endo,non-canonical,non-pair-contact,junction-loop,splayed-apart 1263 U . A.U1341 0.007 turn,anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart 1264 G ( A.G1342 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart 1265 C ( A.C1343 0.011 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem 1266 C ( A.C1344 0.010 anti,~C2'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,phosphate 1267 U . A.U1345 0.008 anti,~C2'-endo,non-canonical,non-pair-contact,junction-loop,phosphate 1268 A . A.A1346 0.010 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate 1269 A . A.A1347 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,junction-loop 1270 G ( A.G1348 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate 1271 G ( A.G1349 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,bulge,phosphate 1272 U . A.U1350 0.006 syn,~C2'-endo,BII,non-pair-contact,bulge 1273 U . A.U1351 0.008 turn,anti,~C2'-endo,non-pair-contact,bulge,cap-donor,phosphate 1274 U ( A.U1352 0.013 turn,syn,~C3'-endo,non-stack,isolated-canonical,non-pair-contact,helix-end,bulge,junction-loop,cap-acceptor 1275 C ( A.C1353 0.010 ~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,junction-loop,A-minor 1276 C ( A.C1354 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1277 U ( A.U1355 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1278 G ( A.G1356 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1279 A ( A.A1357 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1280 G ( A.G1358 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 1281 G . A.G1359 0.015 anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor 1282 A . A.A1360 0.010 anti,~C3'-endo,non-pair-contact,internal-loop 1283 A . A.A1361 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor 1284 G ( A.G1362 0.017 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate 1285 G ( A.G1363 0.015 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,phosphate,splayed-apart 1286 C . A.C1364 0.009 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,phosphate,splayed-apart 1287 U . A.U1365 0.008 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 1288 C . A.C1366 0.007 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 1289 G . A.G1367 0.012 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 1290 U . A.U1368 0.008 turn,syn,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 1291 C ) A.C1369 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 1292 C ) A.C1370 0.007 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 1293 G . A.G1371 0.010 turn,syn,~C2'-endo,non-pair-contact,internal-loop,splayed-apart 1294 C ) A.C1372 0.007 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,splayed-apart 1295 U ) A.U1373 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1296 C ) A.C1374 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1297 A ) A.A1375 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1298 G ) A.G1376 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1299 G ) A.G1377 0.010 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,junction-loop,A-minor 1300 G . A.G1378 0.012 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate 1301 U . A.U1379 0.010 anti,~C2'-endo,non-pair-contact,junction-loop,phosphate,splayed-apart 1302 U . A.U1380 0.009 anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart 1303 A . A.A1381 0.014 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 1304 G [ A.G1382 0.019 pseudoknotted,turn,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor,splayed-apart 1305 U [ A.U1383 0.008 pseudoknotted,anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,cap-donor,phosphate,splayed-apart 1306 C ( A.C1384 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,splayed-apart 1307 G ( A.G1385 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1308 G ( A.G1386 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1309 G ( A.G1387 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,junction-loop,phosphate 1310 A . A.A1388 0.009 turn,syn,~C3'-endo,non-pair-contact,junction-loop 1311 C ( A.C1389 0.007 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop,ribose-zipper 1312 C ( A.C1390 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,ribose-zipper 1313 U . A.U1391 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1314 A . A.A1392 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper,phosphate 1315 A . A.A1393 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper 1316 G ( A.G1394 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1317 C ( A.C1395 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1318 C ( A.C1396 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1319 G . A.G1397 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1320 A . A.A1398 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 1321 G . A.G1399 0.015 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor 1322 G ( A.G1400 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop,cap-donor 1323 C ( A.C1401 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor,ribose-zipper 1324 C ( A.C1402 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop,ribose-zipper 1325 G . A.G1403 0.007 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 1326 A . A.A1404 0.008 turn,u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop 1327 A . A.A1405 0.008 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate 1328 A . A.A1406 0.006 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 1329 G ) A.G1407 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop 1330 G ) A.G1408 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor 1331 C ) A.C1409 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,internal-loop 1332 G . A.G1410 0.017 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1333 U . A.U1411 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 1334 A . A.A1412 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1335 G ) A.G1413 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1336 G ) A.G1414 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1337 C ) A.C1415 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1338 G . A.G1416 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1339 A . A.A1417 0.012 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1340 U . A.U1418 0.007 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1341 G ) A.G1419 0.013 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor,phosphate 1342 G ) A.G1420 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop 1343 A . A.A1421 0.013 syn,~C3'-endo,BI,non-pair-contact,junction-loop 1344 C . A.C1422 0.006 anti,~C3'-endo,non-pair-contact,junction-loop 1345 A . A.A1423 0.008 anti,~C3'-endo,BI,non-stack,non-pair-contact,junction-loop,A-minor,cap-acceptor,splayed-apart 1346 A ( A.A1424 0.012 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1347 C ( A.C1425 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1348 A ( A.A1426 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1349 G ( A.G1427 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1350 G ( A.G1428 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1351 U . A.U1429 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop 1352 U . A.U1430 0.003 u-turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,cap-acceptor 1353 G . A.G1431 0.010 turn,u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop 1354 A . A.A1432 0.009 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-donor,phosphate,splayed-apart 1355 U . A.U1433 0.014 u-turn,~C3'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1356 A . A.A1434 0.010 ~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 1357 U . A.U1435 0.006 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1358 U . A.U1436 0.013 anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1359 C ) A.C1437 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate 1360 C ) A.C1438 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1361 U ) A.U1439 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1362 G ) A.G1440 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1363 U ) A.U1441 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1364 A ] A.A1442 0.011 pseudoknotted,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1365 C ] A.C1443 0.008 pseudoknotted,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor 1366 C ( A.C1444 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1367 A ( A.A1445 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1368 C ( A.C1446 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper 1369 C ( A.C1447 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,ribose-zipper 1370 U ( A.U1448 0.008 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1371 C . A.C1449 0.008 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,bulge 1372 C ( A.C1450 0.008 k-turn,anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end,coaxial-stack,bulge 1373 U ( A.U1451 0.007 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1374 C ( A.C1452 0.006 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1375 A ( A.A1453 0.009 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1376 C ( A.C1454 0.005 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1377 C ( A.C1455 0.004 k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,A-minor,ribose-zipper 1378 A . A.A1456 0.005 k-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,ribose-zipper,phosphate 1379 U . A.U1457 0.002 k-turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart 1380 U . A.U1458 0.006 k-turn,anti,~C3'-endo,non-pair-contact,internal-loop,splayed-apart 1381 U . A.U1459 0.003 turn,k-turn,anti,~C3'-endo,non-stack,internal-loop,splayed-apart 1382 G . A.G1460 0.006 k-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,ribose-zipper,phosphate,splayed-apart 1383 A . A.A1461 0.005 k-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,ribose-zipper 1384 G ( A.G1462 0.007 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1385 C ( A.C1463 0.005 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1386 A . A.A1464 0.008 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 1387 A . A.A1465 0.008 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 1388 U . A.U1466 0.003 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 1389 G ( A.G1467 0.013 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor,splayed-apart 1390 G ( A.G1468 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1391 G ( A.G1469 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1392 G ( A.G1470 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1393 G . A.G1471 0.015 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 1394 G . A.G1472 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate 1395 A . A.A1473 0.009 anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,cap-donor 1396 C . A.C1474 0.007 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-acceptor,splayed-apart 1397 G ( A.G1475 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1398 C ( A.C1476 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1399 A ( A.A1477 0.014 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,phosphate 1400 G ( A.G1478 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1401 G . A.G1479 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1402 A . A.A1480 0.010 ~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1403 G ( A.G1481 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1404 G ( A.G1482 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1405 A ( A.A1483 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1406 U . A.U1484 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1407 A . A.A1485 0.017 syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor 1408 G ( A.G1486 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-donor 1409 G ( A.G1487 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1410 G ( A.G1488 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1411 U . A.U1489 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1412 A ( A.A1490 0.012 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop 1413 A . A.A1491 0.014 syn,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 1414 G ( A.G1492 0.010 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,ribose-zipper 1415 C ( A.C1493 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper 1416 G ( A.G1494 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1417 C . A.C1495 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1418 G ( A.G1496 0.011 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop,kissing-loop 1419 G . A.G1497 0.011 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop,phosphate 1420 U . A.U1498 0.005 syn,~C2'-endo,non-pair-contact,hairpin-loop,kissing-loop 1421 A . A.A1499 0.004 ~C3'-endo,non-stack,hairpin-loop,kissing-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 1422 U . A.U1500 0.005 anti,~C2'-endo,BII,non-stack,hairpin-loop,kissing-loop,splayed-apart 1423 U . A.U1501 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,kissing-loop 1424 G { A.G1502 0.014 pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,hairpin-loop,kissing-loop 1425 G . A.G1503 0.010 syn,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop 1426 A . A.A1504 0.007 turn,syn,~C2'-endo,non-pair-contact,hairpin-loop,kissing-loop,cap-donor 1427 U . A.U1505 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop,cap-acceptor,splayed-apart 1428 A . A.A1506 0.006 turn,syn,~C3'-endo,non-stack,hairpin-loop,kissing-loop,splayed-apart 1429 U ) A.U1507 0.007 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop,kissing-loop,splayed-apart 1430 C . A.C1508 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1431 C ) A.C1509 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1432 G ) A.G1510 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 1433 C ) A.C1511 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor 1434 G . A.G1512 0.017 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 1435 U ( A.U1513 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1436 C ( A.C1514 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1437 C . A.C1515 0.011 syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1438 A . A.A1516 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1439 A . A.A1517 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1440 G . A.G1518 0.013 anti,~C3'-endo,non-pair-contact,internal-loop 1441 C ( A.C1519 0.007 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,phosphate 1442 A . A.A1520 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1443 G . A.G1521 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1444 U . A.U1522 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop 1445 U . A.U1523 0.008 anti,~C3'-endo,non-pair-contact,internal-loop 1446 A ( A.A1524 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop 1447 G ( A.G1525 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1448 G ( A.G1526 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1449 C ( A.C1527 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,internal-loop 1450 U . A.U1528 0.007 anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 1451 G ( A.G1529 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,splayed-apart 1452 G ( A.G1530 0.013 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack 1453 G ( A.G1531 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1454 A ( A.A1532 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1455 A ( A.A1533 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1456 A ( A.A1534 0.007 anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1457 U . A.U1535 0.006 anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart 1458 A . A.A1536 0.003 turn,syn,~C2'-endo,non-stack,internal-loop,splayed-apart 1459 G ( A.G1537 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 1460 G ( A.G1538 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,splayed-apart 1461 C . A.C1539 0.005 syn,~C2'-endo,non-stack,hairpin-loop,splayed-apart 1462 A . A.A1540 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop 1463 A . A.A1541 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop,ribose-zipper 1464 A . A.A1542 0.010 anti,~C3'-endo,non-pair-contact,hairpin-loop,A-minor,ribose-zipper,splayed-apart 1465 U . A.U1543 0.004 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1466 C ) A.C1544 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop,splayed-apart 1467 C ) A.C1545 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1468 G . A.G1546 0.009 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1469 U ) A.U1547 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1470 U ) A.U1548 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1471 U ) A.U1549 0.006 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem,coaxial-stack 1472 C ) A.C1550 0.007 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem,coaxial-stack 1473 C ) A.C1551 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1474 C ) A.C1552 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 1475 A . A.A1553 0.007 anti,~C2'-endo,non-pair-contact,internal-loop 1476 U . A.U1554 0.004 turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate 1477 A . A.A1555 0.008 anti,~C2'-endo,non-pair-contact,internal-loop 1478 A . A.A1556 0.008 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1479 G ) A.G1557 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop 1480 C ) A.C1558 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1481 C ) A.C1559 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 1482 U ) A.U1560 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,internal-loop 1483 G . A.G1561 0.009 ~C3'-endo,non-pair-contact,internal-loop 1484 A . A.A1562 0.009 syn,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop 1485 G . A.G1563 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1486 C . A.C1564 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1487 U . A.U1565 0.006 anti,~C3'-endo,BI,non-stack,non-canonical,internal-loop 1488 G ) A.G1566 0.015 ~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop 1489 U . A.U1567 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1490 G . A.G1568 0.025 syn,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1491 A . A.A1569 0.013 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor,splayed-apart 1492 U . A.U1570 0.004 turn,anti,~C3'-endo,non-stack,internal-loop,splayed-apart 1493 G ) A.G1571 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-acceptor,splayed-apart 1494 G ) A.G1572 0.010 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1495 C ( A.C1573 0.011 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,phosphate 1496 G . A.G1574 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop 1497 A . A.A1575 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1498 G ( A.G1576 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1499 C ( A.C1577 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1500 G . A.G1578 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop 1501 A . A.A1579 0.012 anti,~C3'-endo,non-pair-contact,hairpin-loop 1502 A . A.A1580 0.010 anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor 1503 A . A.A1581 0.009 syn,~C2'-endo,non-pair-contact,hairpin-loop,ribose-zipper,cap-acceptor 1504 U . A.U1582 0.006 anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,hairpin-loop,ribose-zipper 1505 A . A.A1583 0.004 turn,syn,~C2'-endo,BI,non-stack,non-pair-contact,hairpin-loop,ribose-zipper,phosphate,splayed-apart 1506 U . A.U1584 0.005 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart 1507 A . A.A1585 0.005 turn,anti,~C3'-endo,BI,non-stack,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 1508 G . A.G1586 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor 1509 U . A.U1587 0.006 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 1510 A . A.A1588 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 1511 G ) A.G1589 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,cap-donor 1512 C ) A.C1590 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1513 G . A.G1591 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1514 A . A.A1592 0.009 anti,~C3'-endo,non-pair-contact,internal-loop,A-minor,ribose-zipper,phosphate 1515 A . A.A1593 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,ribose-zipper 1516 G ) A.G1594 0.012 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,splayed-apart 1517 U ) A.U1595 0.008 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,splayed-apart 1518 U . A.U1596 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1519 C ) A.C1597 0.006 anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end,coaxial-stack,internal-loop 1520 C ) A.C1598 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1521 U ) A.U1599 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1522 G . A.G1600 0.018 syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1523 A . A.A1601 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1524 U . A.U1602 0.008 turn,anti,~C2'-endo,non-stack,non-canonical,internal-loop,splayed-apart 1525 U ) A.U1603 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 1526 C ) A.C1604 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1527 C ) A.C1605 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1528 A . A.A1606 0.013 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop 1529 C . A.C1607 0.009 turn,anti,~C2'-endo,BII,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop 1530 A . A.A1608 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1531 C ) A.C1609 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1532 U ) A.U1610 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1533 G ) A.G1611 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1534 C ) A.C1612 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1535 C ( A.C1613 0.010 anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop 1536 A . A.A1614 0.011 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1537 A . A.A1615 0.010 anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1538 G ) A.G1616 0.010 ~C3'-endo,BII,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,phosphate,splayed-apart 1539 A . A.A1617 0.011 anti,~C3'-endo,BI,non-pair-contact,junction-loop,A-minor,phosphate,splayed-apart 1540 A . A.A1618 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,A-minor,phosphate 1541 A . A.A1619 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper,phosphate 1542 A . A.A1620 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop,ribose-zipper 1543 G . A.G1621 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 1544 C ) A.C1622 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1545 C ) A.C1623 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1546 U ) A.U1624 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1547 C ) A.C1625 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,A-minor,ribose-zipper 1548 U . A.U1626 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper,phosphate 1549 A . A.A1627 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1550 G ) A.G1628 0.008 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1551 C ) A.C1629 0.005 k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1552 G . A.G1630 0.010 k-turn,anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 1553 A . A.A1631 0.010 k-turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop 1554 G ) A.G1632 0.009 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,A-minor 1555 G ) A.G1633 0.008 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1556 U ) A.U1634 0.007 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1557 G ) A.G1635 0.007 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1558 A ) A.A1636 0.007 k-turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1559 G ) A.G1637 0.010 k-turn,anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1560 A ) A.A1638 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1561 G ) A.G1639 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack 1562 G ) A.G1640 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 1563 U ) A.U1641 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1564 G ) A.G1642 0.007 anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1565 C ) A.C1643 0.006 anti,~C3'-endo,BI,non-stack,canonical,helix-end,stem-end,junction-loop,splayed-apart 1566 C ) A.C1644 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 1567 C ) A.C1645 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 1568 G ) A.G1646 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate 1569 U . A.U1647 0.009 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 1570 A ) A.A1648 0.011 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,bulge,junction-loop,splayed-apart 1571 C ) A.C1649 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,bulge 1572 C ) A.C1650 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop 1573 G . A.G1651 0.018 syn,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,junction-loop,cap-donor,splayed-apart 1574 C . A.C1652 0.006 turn,anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 1575 A . A.A1653 0.012 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,junction-loop,cap-acceptor,phosphate,splayed-apart 1576 A . A.A1654 0.010 turn,anti,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 1577 A . A.A1655 0.014 syn,~C2'-endo,BI,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart 1578 C ( A.C1656 0.014 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,junction-loop,phosphate,splayed-apart 1579 C ( A.C1657 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,phosphate 1580 G . A.G1658 0.010 anti,~C3'-endo,non-pair-contact,hairpin-loop,splayed-apart 1581 A . A.A1659 0.010 turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1582 C . A.C1660 0.007 anti,~C2'-endo,BI,non-canonical,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1583 A . A.A1661 0.010 turn,anti,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,splayed-apart 1584 C . A.C1662 0.010 anti,~C2'-endo,non-pair-contact,hairpin-loop,splayed-apart 1585 A . A.A1663 0.008 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1586 G ) A.G1664 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,splayed-apart 1587 G ) A.G1665 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,junction-loop 1588 U . A.U1666 0.009 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,junction-loop 1589 A . A.A1667 0.012 syn,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate 1590 G ) A.G1668 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,junction-loop 1591 G ) A.G1669 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1592 C ) A.C1670 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop 1593 G . A.G1671 0.011 anti,~C3'-endo,BII,non-pair-contact,junction-loop,splayed-apart 1594 A ( A.A1672 0.017 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1595 G ( A.G1673 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1596 G ( A.G1674 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1597 A ( A.A1675 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor 1598 G . A.G1676 0.013 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor,splayed-apart 1599 A . A.A1677 0.012 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,A-minor,splayed-apart 1600 G . A.G1678 0.010 u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart 1601 A . A.A1679 0.012 turn,u-turn,anti,~C2'-endo,non-canonical,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart 1602 A . A.A1680 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 1603 U ) A.U1681 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,hairpin-loop,A-minor 1604 C ) A.C1682 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1605 C ) A.C1683 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1606 U ) A.U1684 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1607 A . A.A1685 0.009 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate 1608 A . A.A1686 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 1609 G ) A.G1687 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1610 G ) A.G1688 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1611 U ) A.U1689 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1612 G ) A.G1690 0.010 turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,A-minor 1613 A . A.A1691 0.015 ~C2'-endo,non-pair-contact,junction-loop,splayed-apart 1614 U . A.U1692 0.006 anti,~C2'-endo,BII,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart 1615 C ( A.C1693 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate,splayed-apart 1616 G ( A.G1694 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1617 A ( A.A1695 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1618 G ( A.G1696 0.017 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1619 A . A.A1697 0.015 anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate 1620 G . A.G1698 0.008 turn,anti,~C2'-endo,BII,non-pair-contact,internal-loop,cap-acceptor,phosphate,splayed-apart 1621 A . A.A1699 0.012 anti,~C3'-endo,BI,non-pair-contact,internal-loop,splayed-apart 1622 A . A.A1700 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1623 C ( A.C1701 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1624 U ( A.U1702 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1625 C ( A.C1703 0.006 anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack 1626 U ( A.U1704 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1627 C ( A.C1705 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1628 G ( A.G1706 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1629 U ( A.U1707 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1630 U ( A.U1708 0.010 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 1631 A . A.A1709 0.010 ~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop 1632 A ( A.A1710 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1633 G ( A.G1711 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 1634 G . A.G1712 0.019 ~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,bulge 1635 A . A.A1713 0.013 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,bulge 1636 A ( A.A1714 0.018 turn,~C3'-endo,non-stack,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,bulge,internal-loop 1637 C . A.C1715 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop 1638 U . A.U1716 0.007 u-turn,anti,~C3'-endo,non-pair-contact,internal-loop,cap-acceptor 1639 C . A.C1717 0.007 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,internal-loop 1640 G . A.G1718 0.007 u-turn,anti,~C3'-endo,BI,non-pair-contact,internal-loop,cap-donor,phosphate,splayed-apart 1641 G ( A.G1719 0.015 turn,u-turn,anti,~C2'-endo,BII,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,junction-loop,A-minor,phosphate,splayed-apart 1642 C . A.C1720 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop 1643 A . A.A1721 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,junction-loop,A-minor,phosphate 1644 A . A.A1722 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor 1645 A . A.A1723 0.011 anti,~C3'-endo,BI,non-pair-contact,junction-loop 1646 A . A.A1724 0.012 anti,~C3'-endo,BI,non-pair-contact,junction-loop 1647 U . A.U1725 0.007 anti,~C3'-endo,non-pair-contact,junction-loop 1648 G . A.G1726 0.008 anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 1649 A ( A.A1727 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,phosphate,splayed-apart 1650 C ( A.C1728 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1651 C ( A.C1729 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1652 C ( A.C1730 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1653 C ( A.C1731 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop 1654 G . A.G1732 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1655 U . A.U1733 0.006 anti,~C3'-endo,BII,non-pair-contact,internal-loop 1656 A . A.A1734 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1657 A . A.A1735 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1658 C ( A.C1736 0.007 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop 1659 U . A.U1737 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 1660 U { A.U1738 0.007 pseudoknotted,turn,anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 1661 C . A.C1739 0.006 turn,anti,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,splayed-apart 1662 G . A.G1740 0.011 turn,syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 1663 G ) A.G1741 0.008 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,internal-loop 1664 G . A.G1742 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1665 A . A.A1743 0.007 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 1666 G . A.G1744 0.008 turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart 1667 A . A.A1745 0.008 anti,~C3'-endo,non-pair-contact,internal-loop,cap-acceptor,phosphate,splayed-apart 1668 A . A.A1746 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor,phosphate 1669 G ) A.G1747 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop 1670 G ) A.G1748 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1671 G ) A.G1749 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1672 G ) A.G1750 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1673 U ) A.U1751 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart 1674 G ( A.G1752 0.015 ~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 1675 C ( A.C1753 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 1676 U ( A.U1754 0.006 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,ribose-zipper 1677 C ( A.C1755 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1678 U ( A.U1756 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1679 G . A.G1757 0.010 syn,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor,phosphate,splayed-apart 1680 U . A.U1758 0.003 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 1681 U . A.U1759 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-donor,phosphate,splayed-apart 1682 A . A.A1760 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1683 G ( A.G1761 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1684 G ( A.G1762 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1685 G ( A.G1763 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1686 U ( A.U1764 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1687 G . A.G1765 0.011 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 1688 C . A.C1766 0.004 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 1689 A . A.A1767 0.005 u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop 1690 A . A.A1768 0.009 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 1691 G ) A.G1769 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 1692 C ) A.C1770 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1693 C ) A.C1771 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1694 C ) A.C1772 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1695 G . A.G1773 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1696 A . A.A1774 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1697 G . A.G1775 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1698 A ) A.A1776 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1699 G ) A.G1777 0.020 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1700 A ) A.A1778 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 1701 G ) A.G1779 0.009 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1702 C ) A.C1780 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1703 C ( A.C1781 0.007 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,phosphate 1704 G . A.G1782 0.009 anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor 1705 C . A.C1783 0.007 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,phosphate 1706 A . A.A1784 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-donor,phosphate,splayed-apart 1707 G ) A.G1785 0.012 anti,~C3'-endo,BII,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,phosphate,splayed-apart 1708 U . A.U1786 0.006 turn,anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 1709 G . A.G1787 0.012 turn,syn,~C2'-endo,non-stack,non-pair-contact,junction-loop,cap-acceptor,splayed-apart 1710 A . A.A1788 0.010 anti,~C3'-endo,BI,non-pair-contact,junction-loop,splayed-apart 1711 A . A.A1789 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,A-minor 1712 U . A.U1790 0.005 anti,~C3'-endo,non-pair-contact,junction-loop 1713 A . A.A1791 0.012 anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 1714 G . A.G1792 0.010 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate,splayed-apart 1715 G ( A.G1793 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1716 C ( A.C1794 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1717 C ( A.C1795 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1718 C ( A.C1796 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1719 A ( A.A1797 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1720 G ( A.G1798 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1721 G ( A.G1799 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1722 C ( A.C1800 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1723 G ( A.G1801 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet 1724 A . A.A1802 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,cap-acceptor 1725 C ] A.C1803 0.009 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,cap-donor,phosphate 1726 U . A.U1804 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop,cap-acceptor,phosphate 1727 G ( A.G1805 0.012 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,A-minor,cap-donor 1728 U ( A.U1806 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,cap-donor 1729 U . A.U1807 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop 1730 U . A.U1808 0.007 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate,splayed-apart 1731 A . A.A1809 0.007 turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 1732 G . A.G1810 0.010 anti,~C2'-endo,BII,non-pair-contact,hairpin-loop,splayed-apart 1733 C . A.C1811 0.005 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 1734 A . A.A1812 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop 1735 A . A.A1813 0.008 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop 1736 A . A.A1814 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate,splayed-apart 1737 A . A.A1815 0.007 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 1738 A ) A.A1816 0.013 ~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop,splayed-apart 1739 C ) A.C1817 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,multiplet,A-minor,phosphate 1740 A . A.A1818 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,phosphate 1741 C . A.C1819 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,phosphate 1742 A . A.A1820 0.019 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop 1743 G ( A.G1821 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end 1744 G ( A.G1822 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1745 U ( A.U1823 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1746 C ( A.C1824 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1747 U ( A.U1825 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1748 C ( A.C1826 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor,phosphate 1749 U ( A.U1827 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,internal-loop,A-minor 1750 G . A.G1828 0.010 turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate 1751 C . A.C1829 0.007 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate,splayed-apart 1752 G . A.G1830 0.009 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,cap-donor,phosphate,splayed-apart 1753 A . A.A1831 0.010 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,phosphate,splayed-apart 1754 A . A.A1832 0.017 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor,phosphate 1755 G ( A.G1833 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop 1756 C ( A.C1834 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 1757 C ( A.C1835 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 1758 G . A.G1836 0.009 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop 1759 U . A.U1837 0.006 turn,u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop 1760 A . A.A1838 0.009 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,A-minor,ribose-zipper 1761 A . A.A1839 0.012 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,A-minor,ribose-zipper,phosphate 1762 G ) A.G1840 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop 1763 G ) A.G1841 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1764 C ) A.C1842 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop 1765 G . A.G1843 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1766 A . A.A1844 0.010 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 1767 A . A.A1845 0.007 turn,anti,~C3'-endo,internal-loop,splayed-apart 1768 G . A.G1846 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate,splayed-apart 1769 U . A.U1847 0.009 anti,~C2'-endo,non-pair-contact,internal-loop,phosphate 1770 A . A.A1848 0.010 anti,~C2'-endo,non-pair-contact,internal-loop,cap-donor,phosphate,splayed-apart 1771 U . A.U1849 0.007 turn,anti,~C2'-endo,internal-loop,splayed-apart 1772 A ) A.A1850 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop,A-minor,cap-acceptor,splayed-apart 1773 G ) A.G1851 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor 1774 G ) A.G1852 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1775 G ) A.G1853 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 1776 G ) A.G1854 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1777 C ) A.C1855 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 1778 U ) A.U1856 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end 1779 G . A.G1857 0.011 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart 1780 A } A.A1858 0.012 pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,splayed-apart 1781 C . A.C1859 0.006 anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate 1782 G . A.G1860 0.005 anti,~C3'-endo,non-pair-contact,ss-non-loop 1783 C . A.C1861 0.001 anti,~C3'-endo,non-pair-contact,ss-non-loop 1784 C . A.C1862 0.001 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 1785 U . A.U1863 0.006 anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart 1786 G . A.G1864 0.004 break,~C2'-endo,non-stack,ss-non-loop,splayed-apart 1787 C . A.C1866 0.003 anti,~C3'-endo,BI,non-stack,non-pair-contact,ss-non-loop,cap-donor,phosphate 1788 C . A.C1867 0.003 turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,cap-donor,phosphate 1789 G . A.G1868 0.011 turn,anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,cap-acceptor 1790 G . A.G1869 0.007 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 1791 U . A.U1870 0.006 anti,~C3'-endo,non-pair-contact,ss-non-loop 1792 G . A.G1871 0.019 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate 1793 C ( A.C1872 0.005 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,phosphate 1794 U ( A.U1873 0.004 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 1795 G . A.G1874 0.009 anti,~C2'-endo,BI,non-canonical,non-pair-contact,bulge,cap-donor 1796 G ( A.G1875 0.012 ~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,internal-loop,cap-acceptor 1797 A . A.A1876 0.003 ~C2'-endo,non-canonical,non-pair-contact,internal-loop 1798 A . A.A1877 0.003 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1799 G . A.G1878 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop,phosphate 1800 G ( A.G1879 0.020 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1801 U ( A.U1880 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 1802 U . A.U1881 0.008 anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 1803 A . A.A1882 0.007 ~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 1804 A . A.A1883 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,A-minor,cap-acceptor,phosphate 1805 G ( A.G1884 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop,A-minor,cap-donor,phosphate 1806 A ( A.A1885 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,phosphate 1807 G . A.G1886 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop 1808 G . A.G1887 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop 1809 A . A.A1888 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,cap-acceptor,phosphate 1810 G . A.G1889 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop,phosphate 1811 C . A.C1890 0.004 break,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop 1812 C . A.C1911 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 1813 G . A.G1912 0.010 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop 1814 A . A.A1913 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,cap-donor 1815 A . A.A1914 0.009 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop 1816 U ) A.U1915 0.011 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end 1817 U ) A.U1916 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,internal-loop,A-minor 1818 G . A.G1917 0.009 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 1819 A . A.A1918 0.003 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1820 A . A.A1919 0.003 anti,~C3'-endo,non-pair-contact,internal-loop 1821 G ) A.G1920 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop 1822 C ) A.C1921 0.009 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1823 C . A.C1922 0.003 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor 1824 C . A.C1923 0.008 turn,syn,~C3'-endo,non-pair-contact,internal-loop,cap-acceptor 1825 C ) A.C1924 0.014 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,bulge,internal-loop 1826 A ) A.A1925 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 1827 G ) A.G1926 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,cap-acceptor 1828 U . A.U1927 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,cap-donor,splayed-apart 1829 A . A.A1928 0.006 ~C3'-endo,BI,non-stack,non-pair-contact,ss-non-loop,cap-acceptor,splayed-apart 1830 A . A.A1929 0.004 break,anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,phosphate 1831 C . A.C2005 0.007 anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix,multiplet,ss-non-loop 1832 A . A.A2006 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop 1833 A . A.A2007 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate 1834 C ) A.C2008 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet 1835 G ) A.G2009 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 1836 A . A.A2010 0.017 turn,syn,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,bulge,splayed-apart 1837 U ) A.U2011 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 1838 C ) A.C2012 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1839 U ) A.U2013 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1840 G ) A.G2014 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1841 G ) A.G2015 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1842 G ) A.G2016 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1843 C ) A.C2017 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1844 A . A.A2018 0.010 anti,~C3'-endo,BI,non-pair-contact,junction-loop 1845 C ) A.C2019 0.009 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,multiplet,internal-loop,junction-loop,A-minor 1846 U . A.U2020 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,splayed-apart 1847 G . A.G2021 0.011 turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart 1848 U ) A.U2022 0.008 turn,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,multiplet,bulge,internal-loop 1849 C ) A.C2023 0.009 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1850 U ) A.U2024 0.011 turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 1851 C . A.C2025 0.008 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,phosphate 1852 A ) A.A2026 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,phosphate 1853 A ) A.A2027 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1854 C ) A.C2028 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1855 G ) A.G2029 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1856 A ) A.A2030 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1857 G ) A.G2031 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1858 A ) A.A2032 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1859 G ) A.G2033 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1860 A . A.A2034 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1861 C ) A.C2035 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1862 U ) A.U2036 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1863 C ) A.C2037 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1864 G ) A.G2038 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 1865 G ) A.G2039 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 1866 U ) A.U2040 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate 1867 G . A.G2041 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1868 A . A.A2042 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 1869 A . A.A2043 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 1870 A . A.A2044 0.013 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1871 U . A.U2045 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1872 U ) A.U2046 0.009 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop,cap-acceptor,splayed-apart 1873 A ) A.A2047 0.010 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,junction-loop,splayed-apart 1874 U . A.U2048 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate 1875 A { A.A2049 0.013 pseudoknotted,anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,junction-loop,A-minor,splayed-apart 1876 G . A.G2050 0.007 turn,syn,~C2'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart 1877 U . A.U2051 0.007 anti,~C2'-endo,non-pair-contact,hairpin-loop,phosphate,splayed-apart 1878 A ( A.A2052 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,phosphate,splayed-apart 1879 C ( A.C2053 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,hairpin-loop 1880 C ( A.C2054 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,hairpin-loop 1881 U ( A.U2055 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,hairpin-loop,cap-donor,phosphate 1882 G ( A.G2056 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,junction-loop,A-minor,phosphate 1883 U . A.U2057 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,junction-loop 1884 G . A.G2058 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,junction-loop,splayed-apart 1885 A . A.A2059 0.007 turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,hairpin-loop,junction-loop,splayed-apart 1886 A . A.A2060 0.003 ~C2'-endo,non-stack,non-pair-contact,hairpin-loop,junction-loop,cap-acceptor 1887 G . A.G2061 0.011 syn,~C2'-endo,non-pair-contact,hairpin-loop,junction-loop,splayed-apart 1888 A ] A.A2062 0.008 pseudoknotted,anti,~C2'-endo,BII,isolated-canonical,non-canonical,non-pair-contact,multiplet,hairpin-loop,junction-loop,phosphate,splayed-apart 1889 U } A.U2063 0.009 pseudoknotted,turn,anti,~C2'-endo,BI,isolated-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,junction-loop,A-minor,splayed-apart 1890 G . A.G2064 0.008 anti,~C2'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,junction-loop,phosphate,splayed-apart 1891 C ) A.C2065 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,junction-loop,A-minor,ribose-zipper,cap-donor,splayed-apart 1892 A ) A.A2066 0.016 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,ribose-zipper 1893 G ) A.G2067 0.012 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem 1894 G ) A.G2068 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 1895 U ) A.U2069 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end 1896 U . A.U2070 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 1897 A . A.A2071 0.009 anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart 1898 C ( A.C2072 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,A-minor,phosphate,splayed-apart 1899 C ( A.C2073 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 1900 C ( A.C2074 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1901 G ( A.G2075 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1902 C ( A.C2076 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 1903 G ( A.G2077 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1904 A ( A.A2078 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1905 C ( A.C2079 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1906 A . A.A2080 0.009 anti,~C2'-endo,BII,non-pair-contact,bulge 1907 G ( A.G2081 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1908 G ( A.G2082 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1909 A ( A.A2083 0.006 turn,anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,splayed-apart 1910 C . A.C2084 0.006 turn,anti,~C3'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 1911 G ( A.G2085 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 1912 G ( A.G2086 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 1913 A . A.A2087 0.007 anti,~C3'-endo,non-pair-contact,ss-non-loop 1914 A . A.A2088 0.005 anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart 1915 A . A.A2089 0.005 turn,~C2'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart 1916 G . A.G2090 0.006 ~C2'-endo,BI,non-pair-contact,ss-non-loop,splayed-apart 1917 A . A.A2091 0.005 turn,syn,~C2'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart 1918 C . A.C2092 0.010 ~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart 1919 C . A.C2093 0.005 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 1920 C . A.C2094 0.006 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 1921 C . A.C2095 0.005 anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop 1922 G . A.G2096 0.006 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,cap-donor,splayed-apart 1923 U . A.U2097 0.002 turn,anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,ss-non-loop,splayed-apart 1924 G ( A.G2098 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,A-minor,cap-acceptor,splayed-apart 1925 G ( A.G2099 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1926 A ( A.A2100 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 1927 G ( A.G2101 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack 1928 C ( A.C2102 0.013 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,ribose-zipper 1929 U ( A.U2103 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,A-minor,ribose-zipper 1930 U . A.U2104 0.010 anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart 1931 U . A.U2105 0.004 turn,anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart 1932 A ( A.A2106 0.029 turn,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,ribose-zipper,splayed-apart 1933 C ( A.C2107 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,ribose-zipper,phosphate 1934 U ( A.U2108 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1935 G ( A.G2109 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 1936 C ( A.C2110 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1937 A . A.A2111 0.010 anti,~C3'-endo,BI,non-pair-contact,internal-loop 1938 G . A.G2112 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1939 C ( A.C2113 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1940 C ( A.C2114 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1941 U . A.U2115 0.009 anti,~C2'-endo,non-pair-contact,internal-loop,phosphate 1942 G ( A.G2116 0.015 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1943 A ( A.A2117 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1944 U ( A.U2118 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1945 A ( A.A2119 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1946 U ( A.U2120 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop,phosphate 1947 U . A.U2121 0.006 anti,~C2'-endo,non-pair-contact,junction-loop,phosphate 1948 G ( A.G2122 0.008 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop 1949 A . A.A2123 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 1950 A ( A.A2124 0.006 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop 1951 U . A.U2125 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1952 G ( A.G2126 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1953 U ( A.U2127 0.003 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1954 U . A.U2128 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1955 G . A.G2129 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1956 G ( A.G2130 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1957 U ( A.U2131 0.004 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1958 A ( A.A2132 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1959 C ( A.C2133 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1960 A ( A.A2134 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1961 G ( A.G2135 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1962 C ( A.C2136 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 1963 U ( A.U2137 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 1964 U . A.U2138 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 1965 G ( A.G2139 0.007 anti,~C2'-endo,isolated-canonical,non-pair-contact,helix,bulge,internal-loop,ribose-zipper,splayed-apart 1966 U . A.U2140 0.005 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,bulge,ribose-zipper,cap-donor,phosphate,splayed-apart 1967 A . A.A2141 0.006 syn,~C2'-endo,non-stack,non-pair-contact,bulge,cap-acceptor,phosphate,splayed-apart 1968 C . A.C2142 0.006 turn,~C3'-endo,non-stack,non-pair-contact,bulge,phosphate,splayed-apart 1969 A . A.A2143 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,bulge,splayed-apart 1970 G . A.G2144 0.006 anti,~C3'-endo,non-pair-contact,bulge,cap-acceptor,phosphate 1971 G . A.G2145 0.006 turn,anti,~C3'-endo,non-stack,non-pair-contact,bulge,phosphate 1972 A . A.A2146 0.004 ~C3'-endo,non-stack,non-pair-contact,bulge,cap-donor,phosphate 1973 U . A.U2147 0.005 anti,~C2'-endo,BII,non-stack,non-canonical,non-pair-contact,multiplet,bulge,ribose-zipper,cap-acceptor 1974 A . A.A2148 0.003 syn,~C2'-endo,non-pair-contact,bulge,ribose-zipper,cap-acceptor,phosphate,splayed-apart 1975 G ( A.G2149 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 1976 G ( A.G2150 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 1977 U ( A.U2151 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,cap-donor,cap-acceptor,phosphate 1978 A . A.A2152 0.008 ~C3'-endo,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 1979 G . A.G2153 0.010 ~C2'-endo,non-pair-contact,internal-loop,cap-acceptor,phosphate,splayed-apart 1980 G . A.G2154 0.006 ~C2'-endo,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate 1981 A . A.A2155 0.005 turn,~C2'-endo,non-stack,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 1982 G ( A.G2156 0.006 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,internal-loop,phosphate,splayed-apart 1983 C ( A.C2157 0.004 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop 1984 C . A.C2158 0.003 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor 1985 U . A.U2159 0.004 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor 1986 U . A.U2160 0.004 ~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor,phosphate,splayed-apart 1987 G . A.G2161 0.008 turn,~C2'-endo,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 1988 G . A.G2162 0.018 ~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 1989 A . A.A2163 0.011 anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate 1990 A . A.A2164 0.007 ~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 1991 A . A.A2165 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor,phosphate 1992 C . A.C2166 0.005 anti,~C3'-endo,BII,non-pair-contact,internal-loop,cap-donor 1993 C . A.C2167 0.007 anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix-end,internal-loop 1994 G ( A.G2168 0.008 anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop 1995 G . A.G2169 0.006 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 1996 A . A.A2170 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop 1997 G ( A.G2171 0.015 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,internal-loop,cap-acceptor 1998 C ( A.C2172 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,A-minor,cap-donor 1999 G . A.G2173 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-donor,cap-acceptor,splayed-apart 2000 C . A.C2174 0.007 turn,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 2001 C . A.C2175 0.006 turn,anti,~C3'-endo,non-stack,hairpin-loop,cap-donor 2002 A . A.A2176 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-acceptor 2003 G ) A.G2177 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,hairpin-loop,A-minor,cap-donor 2004 C ) A.C2178 0.006 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,internal-loop 2005 U . A.U2179 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2006 U . A.U2180 0.005 anti,~C2'-endo,non-canonical,non-pair-contact,internal-loop,phosphate 2007 C ) A.C2181 0.006 turn,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,multiplet,internal-loop 2008 G . A.G2182 0.009 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,cap-donor 2009 G . A.G2183 0.017 syn,~C3'-endo,non-stack,non-canonical,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate 2010 U . A.U2184 0.004 anti,~C2'-endo,BI,non-pair-contact,internal-loop,phosphate 2011 G . A.G2185 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor 2012 G . A.G2186 0.004 anti,~C3'-endo,BII,non-stack,non-canonical,non-pair-contact,helix-end,internal-loop,cap-donor 2013 A . A.A2187 0.013 turn,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor,cap-acceptor,phosphate 2014 G . A.G2188 0.015 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2015 G ) A.G2189 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,internal-loop,phosphate 2016 C ) A.C2190 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,internal-loop 2017 A . A.A2191 0.005 anti,~C2'-endo,BII,non-canonical,non-pair-contact,internal-loop 2018 U . A.U2192 0.006 turn,anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 2019 C . A.C2193 0.005 anti,~C3'-endo,non-pair-contact,internal-loop,cap-donor 2020 G . A.G2194 0.017 ~C2'-endo,non-stack,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate 2021 G . A.G2195 0.005 anti,~C2'-endo,non-pair-contact,internal-loop,cap-acceptor,splayed-apart 2022 U . A.U2196 0.009 turn,anti,~C3'-endo,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart 2023 G . A.G2197 0.012 ~C3'-endo,BI,non-pair-contact,internal-loop,splayed-apart 2024 G . A.G2198 0.015 turn,syn,~C2'-endo,non-canonical,non-pair-contact,internal-loop,splayed-apart 2025 G . A.G2199 0.003 ~C2'-endo,non-canonical,non-pair-contact,internal-loop 2026 A . A.A2200 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop,cap-donor 2027 U . A.U2201 0.004 anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 2028 A . A.A2202 0.011 turn,~C2'-endo,non-stack,non-pair-contact,internal-loop,cap-acceptor,splayed-apart 2029 C . A.C2203 0.003 anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 2030 U . A.U2204 0.007 turn,anti,~C3'-endo,non-pair-contact,internal-loop 2031 A ) A.A2205 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,internal-loop,phosphate 2032 C ) A.C2206 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2033 C ) A.C2207 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 2034 C ) A.C2208 0.005 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,bulge,internal-loop 2035 U . A.U2209 0.002 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2036 G ) A.G2210 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2037 G ) A.G2211 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2038 C ) A.C2212 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2039 U ) A.U2213 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2040 G ) A.G2214 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2041 U ) A.U2215 0.004 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2042 A ) A.A2216 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2043 U ) A.U2217 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2044 U . A.U2218 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2045 G . A.G2219 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2046 A ) A.A2220 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2047 C ) A.C2221 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2048 C . A.C2222 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2049 U ) A.U2223 0.007 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,multiplet,internal-loop 2050 U . A.U2224 0.003 anti,~C3'-endo,non-stack,non-canonical,helix,multiplet,internal-loop 2051 C ) A.C2225 0.007 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop,junction-loop 2052 U . A.U2226 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 2053 A . A.A2227 0.008 syn,~C2'-endo,BI,non-stack,non-pair-contact,junction-loop,splayed-apart 2054 A . A.A2228 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart 2055 C . A.C2229 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 2056 C ( A.C2230 0.012 anti,~C3'-endo,non-stack,canonical,helix,stem-end,coaxial-stack,junction-loop 2057 C ( A.C2231 0.006 anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 2058 G . A.G2232 0.009 turn,syn,~C2'-endo,BII,non-stack,non-pair-contact,bulge,cap-acceptor,splayed-apart 2059 C ( A.C2233 0.005 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate,splayed-apart 2060 C ( A.C2234 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2061 G ( A.G2235 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2062 C ( A.C2236 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2063 C ( A.C2237 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 2064 C ( A.C2238 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,phosphate 2065 U . A.U2239 0.008 anti,~C2'-endo,BII,non-canonical,non-pair-contact,hairpin-loop,splayed-apart 2066 U . A.U2240 0.004 turn,anti,~C2'-endo,BI,non-stack,non-pair-contact,hairpin-loop,splayed-apart 2067 A . A.A2241 0.012 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,splayed-apart 2068 U . A.U2242 0.004 turn,anti,~C2'-endo,non-stack,hairpin-loop,splayed-apart 2069 C . A.C2243 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,splayed-apart 2070 G ) A.G2244 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2071 G ) A.G2245 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 2072 G ) A.G2246 0.008 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2073 C ) A.C2247 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2074 G ) A.G2248 0.017 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2075 G ) A.G2249 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2076 G ) A.G2250 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2077 G ) A.G2251 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2078 A . A.A2252 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,cap-acceptor 2079 G . A.G2253 0.012 anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,cap-donor 2080 A . A.A2254 0.010 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop,cap-donor,phosphate 2081 C . A.C2255 0.007 anti,~C3'-endo,BI,non-pair-contact,junction-loop,cap-acceptor,phosphate 2082 A . A.A2256 0.007 anti,~C3'-endo,non-pair-contact,junction-loop,phosphate 2083 G ) A.G2257 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,junction-loop 2084 U ) A.U2258 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2085 G ) A.G2259 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2086 U ) A.U2260 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2087 C ) A.C2261 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2088 A . A.A2262 0.010 ~C2'-endo,non-pair-contact,internal-loop 2089 G ) A.G2263 0.012 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2090 G ) A.G2264 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2091 U . A.U2265 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop,phosphate 2092 G . A.G2266 0.018 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-donor 2093 G . A.G2267 0.010 turn,syn,~C2'-endo,non-stack,non-pair-contact,internal-loop,phosphate 2094 G ) A.G2268 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-acceptor 2095 C ) A.C2269 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2096 A ) A.A2270 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2097 G ) A.G2271 0.019 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2098 U ) A.U2272 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,phosphate 2099 U . A.U2273 0.003 break,anti,~C2'-endo,non-pair-contact,ss-non-loop,phosphate 2100 C ( A.C2289 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,cap-acceptor,phosphate 2101 C ( A.C2290 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,multiplet,hairpin-loop,phosphate 2102 U . A.U2291 0.008 anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart 2103 C . A.C2292 0.006 anti,~C2'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 2104 C . A.C2293 0.007 anti,~C2'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 2105 U . A.U2294 0.011 anti,~C2'-endo,BI,non-stack,non-pair-contact,hairpin-loop,cap-donor,cap-acceptor,splayed-apart 2106 A . A.A2295 0.014 ~C2'-endo,non-stack,non-canonical,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart 2107 A . A.A2296 0.009 ~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 2108 A . A.A2297 0.008 turn,syn,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,phosphate,splayed-apart 2109 A . A.A2298 0.002 anti,~C2'-endo,BI,non-pair-contact,hairpin-loop,cap-donor,phosphate,splayed-apart 2110 G . A.G2299 0.007 ~C3'-endo,BI,non-pair-contact,hairpin-loop,cap-acceptor 2111 G . A.G2300 0.008 ~C3'-endo,non-pair-contact,hairpin-loop 2112 U . A.U2301 0.003 turn,anti,~C3'-endo,non-stack,non-canonical,hairpin-loop,splayed-apart 2113 A . A.A2302 0.014 syn,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 2114 A . A.A2303 0.006 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor 2115 C . A.C2304 0.004 anti,~C2'-endo,BI,non-stack,non-pair-contact,hairpin-loop,splayed-apart 2116 G . A.G2305 0.012 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,hairpin-loop,splayed-apart 2117 G . A.G2306 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop 2118 A . A.A2307 0.007 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate 2119 G ) A.G2308 0.009 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,multiplet,hairpin-loop 2120 G ) A.G2309 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,cap-acceptor 2121 C . A.C2310 0.004 anti,~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,phosphate,splayed-apart 2122 G . A.G2311 0.005 turn,~C3'-endo,BII,non-stack,non-pair-contact,ss-non-loop,cap-donor,phosphate,splayed-apart 2123 C . A.C2312 0.009 syn,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart 2124 C . A.C2313 0.009 ~C3'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart 2125 C . A.C2314 0.010 anti,~C2'-endo,BII,non-pair-contact,ss-non-loop 2126 A . A.A2315 0.008 anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,ss-non-loop,splayed-apart 2127 A . A.A2316 0.010 turn,anti,~C2'-endo,BII,non-pair-contact,ss-non-loop,cap-donor,phosphate,splayed-apart 2128 A . A.A2317 0.005 turn,syn,~C3'-endo,non-canonical,non-pair-contact,ss-non-loop,splayed-apart 2129 G . A.G2318 0.009 turn,~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,cap-acceptor 2130 G . A.G2319 0.008 turn,~C2'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart 2131 U . A.U2320 0.008 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart 2132 U . A.U2321 0.012 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate 2133 C . A.C2322 0.007 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate 2134 C . A.C2323 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop 2135 C ( A.C2324 0.016 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 2136 U . A.U2325 0.006 anti,~C2'-endo,non-pair-contact,internal-loop 2137 C . A.C2326 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop 2138 A . A.A2327 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-donor,phosphate 2139 G . A.G2328 0.011 anti,~C3'-endo,BI,non-pair-contact,internal-loop,cap-acceptor 2140 A ( A.A2329 0.018 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,internal-loop,cap-donor 2141 A . A.A2330 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,bulge,cap-acceptor 2142 U ( A.U2331 0.012 anti,~C2'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,bulge,cap-donor 2143 G . A.G2332 0.011 turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop 2144 G . A.G2333 0.005 break,syn,~C2'-endo,non-pair-contact,ss-non-loop,phosphate 2145 U . A.U2341 0.004 anti,~C3'-endo,BII,non-stack,ss-non-loop 2146 C . A.C2342 0.012 syn,~C2'-endo,non-pair-contact,ss-non-loop 2147 A ) A.A2343 0.010 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,bulge 2148 U ) A.U2344 0.008 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,bulge,internal-loop 2149 U . A.U2345 0.006 anti,~C2'-endo,BII,non-stack,non-pair-contact,internal-loop,cap-donor 2150 C . A.C2346 0.007 anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix,multiplet,internal-loop,cap-acceptor 2151 G . A.G2347 0.006 turn,syn,~C3'-endo,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart 2152 C . A.C2348 0.006 turn,anti,~C2'-endo,non-stack,non-pair-contact,internal-loop,splayed-apart 2153 A . A.A2349 0.008 syn,~C2'-endo,BII,non-pair-contact,internal-loop,cap-donor,phosphate 2154 G . A.G2350 0.010 turn,syn,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,cap-acceptor,phosphate 2155 A . A.A2351 0.011 ~C3'-endo,non-pair-contact,internal-loop,cap-acceptor 2156 G . A.G2352 0.011 ~C2'-endo,BI,non-pair-contact,internal-loop 2157 U . A.U2353 0.008 anti,~C3'-endo,BII,non-stack,non-pair-contact,internal-loop,phosphate,splayed-apart 2158 G . A.G2354 0.006 syn,~C2'-endo,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 2159 U . A.U2355 0.011 anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart 2160 A . A.A2356 0.013 anti,~C3'-endo,BI,non-pair-contact,internal-loop 2161 A . A.A2357 0.007 syn,~C3'-endo,non-canonical,non-pair-contact,internal-loop 2162 A . A.A2358 0.014 anti,~C2'-endo,non-canonical,non-pair-contact,internal-loop,cap-donor 2163 G . A.G2359 0.010 turn,anti,~C3'-endo,non-canonical,non-pair-contact,internal-loop,cap-acceptor 2164 G . A.G2360 0.002 anti,~C2'-endo,non-pair-contact,internal-loop,phosphate 2165 C . A.C2361 0.002 syn,~C2'-endo,non-stack,non-canonical,non-pair-contact,internal-loop,phosphate 2166 A . A.A2362 0.001 syn,~C3'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 2167 C . A.C2363 0.007 turn,~C3'-endo,non-stack,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 2168 A . A.A2364 0.005 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 2169 A . A.A2365 0.011 syn,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 2170 G ) A.G2366 0.019 anti,~C2'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop,splayed-apart 2171 G . A.G2367 0.033 anti,~C2'-endo,BI,non-canonical,non-pair-contact,ss-non-loop,phosphate 2172 G . A.G2368 0.009 syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop 2173 A . A.A2369 0.007 anti,~C2'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,phosphate 2174 G . A.G2370 0.020 syn,~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop 2175 C . A.C2371 0.009 anti,~C2'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 2176 U . A.U2372 0.007 anti,~C2'-endo,BII,non-pair-contact,ss-non-loop,cap-acceptor,phosphate 2177 U . A.U2373 0.012 turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,phosphate,splayed-apart 2178 G . A.G2374 0.009 turn,anti,non-pair-contact,ss-non-loop,splayed-apart 2179 A . A.A2375 0.010 turn,syn,~C2'-endo,non-canonical,non-pair-contact,ss-non-loop,cap-acceptor,splayed-apart 2180 C ( A.C2376 0.008 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,splayed-apart 2181 U ( A.U2377 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,multiplet,internal-loop,phosphate 2182 G . A.G2378 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2183 C ( A.C2379 0.009 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,internal-loop 2184 G . A.G2380 0.006 anti,~C2'-endo,non-pair-contact,internal-loop,phosphate 2185 A . A.A2381 0.014 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 2186 G . A.G2382 0.010 anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate 2187 A ( A.A2383 0.016 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,internal-loop 2188 C ( A.C2384 0.012 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,hairpin-loop 2189 C . A.C2385 0.004 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 2190 U . A.U2386 0.005 turn,anti,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,cap-donor,splayed-apart 2191 A . A.A2387 0.005 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,phosphate,splayed-apart 2192 C . A.C2388 0.007 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate 2193 A . A.A2389 0.008 anti,~C3'-endo,non-pair-contact,hairpin-loop 2194 A . A.A2390 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop 2195 G ) A.G2391 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,hairpin-loop 2196 U ) A.U2392 0.013 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix-end,stem-end,internal-loop 2197 C . A.C2393 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,internal-loop 2198 G . A.G2394 0.008 ~C2'-endo,BI,non-stack,non-pair-contact,internal-loop,cap-donor,cap-acceptor,phosphate 2199 A . A.A2395 0.007 anti,~C3'-endo,BI,non-pair-contact,internal-loop,phosphate 2200 G ) A.G2396 0.015 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop 2201 C . A.C2397 0.011 anti,~C2'-endo,non-canonical,non-pair-contact,internal-loop 2202 A ) A.A2398 0.013 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,multiplet,internal-loop 2203 G ) A.G2399 0.015 anti,~C2'-endo,BI,canonical,non-pair-contact,helix-end,stem-end 2204 G . A.G2400 0.010 syn,~C2'-endo,non-pair-contact,ss-non-loop 2205 G . A.G2401 0.020 anti,non-pair-contact,ss-non-loop,cap-donor 2206 A . A.A2402 0.015 ~C3'-endo,non-pair-contact,ss-non-loop,cap-acceptor,phosphate 2207 C . A.C2403 0.009 turn,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,phosphate 2208 G . A.G2404 0.016 anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate 2209 A . A.A2405 0.017 ~C2'-endo,non-stack,non-pair-contact,ss-non-loop,cap-donor,phosphate 2210 A . A.A2406 0.016 ~C2'-endo,BI,non-stack,non-pair-contact,ss-non-loop,cap-acceptor 2211 A . A.A2407 0.008 ~C2'-endo,non-pair-contact,ss-non-loop 2212 G . A.G2408 0.009 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 2213 U . A.U2409 0.010 anti,~C2'-endo,BI,non-pair-contact,ss-non-loop 2214 C . A.C2410 0.011 turn,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart 2215 G . A.G2411 0.013 ~C2'-endo,non-stack,non-pair-contact,ss-non-loop,cap-donor,phosphate,splayed-apart 2216 G . A.G2412 0.019 turn,syn,~C2'-endo,non-stack,non-canonical,non-pair-contact,ss-non-loop,phosphate,splayed-apart 2217 G . A.G2413 0.007 syn,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,phosphate,splayed-apart 2218 C . A.C2414 0.008 anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,multiplet,ss-non-loop,phosphate,splayed-apart 2219 U . A.U2415 0.009 anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop 2220 U . A.U2416 0.008 anti,~C3'-endo,BII,non-stack,non-canonical,non-pair-contact,multiplet,ss-non-loop 2221 A . A.A2417 0.006 syn,~C3'-endo,BI,non-pair-contact,ss-non-loop,cap-donor,cap-acceptor,phosphate 2222 G . A.G2418 0.007 turn,anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,splayed-apart 2223 U . A.U2419 0.002 anti,~C3'-endo,non-pair-contact,ss-non-loop,splayed-apart 2224 G . A.G2420 0.007 anti,~C3'-endo,BII,non-pair-contact,ss-non-loop 2225 A . A.A2421 0.007 turn,syn,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,phosphate 2226 U . A.U2422 0.005 anti,~C3'-endo,non-stack,ss-non-loop 2227 C . A.C2423 0.011 turn,syn,~C3'-endo,non-stack,non-pair-contact,ss-non-loop 2228 C . A.C2424 0.004 turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,phosphate 2229 G . A.G2425 0.009 ~C2'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop,cap-donor,phosphate 2230 G . A.G2426 0.016 turn,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,cap-acceptor 2231 U . A.U2427 0.011 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,cap-donor 2232 G . A.G2428 0.009 ~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,cap-acceptor,phosphate 2233 G . A.G2429 0.008 ~C3'-endo,non-canonical,non-pair-contact,helix,ss-non-loop,cap-acceptor 2234 U . A.U2430 0.007 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,splayed-apart 2235 U . A.U2431 0.004 turn,anti,~C3'-endo,BI,non-stack,ss-non-loop,splayed-apart 2236 C ( A.C2432 0.018 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,splayed-apart 2237 C ( A.C2433 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,kissing-loop,phosphate 2238 G . A.G2434 0.013 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop,splayed-apart 2239 C . A.C2435 0.005 anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,kissing-loop,phosphate,splayed-apart 2240 A ] A.A2436 0.014 pseudoknotted,anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop,cap-donor,phosphate,splayed-apart 2241 U . A.U2437 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,hairpin-loop,kissing-loop,phosphate 2242 G . A.G2438 0.006 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,kissing-loop 2243 G . A.G2439 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop,kissing-loop 2244 A . A.A2440 0.005 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,kissing-loop 2245 A . A.A2441 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop 2246 G ) A.G2442 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,hairpin-loop,kissing-loop 2247 G ) A.G2443 0.014 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end 2248 G . A.G2444 0.024 anti,~C3'-endo,non-pair-contact,ss-non-loop 2249 C . A.C2445 0.006 ~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,cap-acceptor,phosphate 2250 C . A.C2446 0.007 ~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,cap-donor,cap-acceptor 2251 A . A.A2447 0.008 ~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop,cap-acceptor 2252 U . A.U2448 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop 2253 C . A.C2449 0.008 syn,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,ss-non-loop,cap-donor,phosphate 2254 G . A.G2450 0.015 syn,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop,cap-acceptor,phosphate,splayed-apart 2255 C . A.C2451 0.006 anti,~C2'-endo,non-stack,non-pair-contact,ss-non-loop,phosphate,splayed-apart 2256 U . A.U2452 0.002 ~C2'-endo,BII,non-stack,non-pair-contact,ss-non-loop,cap-acceptor,phosphate,splayed-apart 2257 C . A.C2453 0.004 turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,splayed-apart 2258 A . A.A2454 0.003 turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,cap-donor,phosphate,splayed-apart 2259 A . A.A2455 0.015 turn,syn,~C2'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart 2260 C . A.C2456 0.004 turn,anti,~C2'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart 2261 G . A.G2457 0.006 turn,anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop,cap-acceptor,phosphate,splayed-apart 2262 G . A.G2458 0.005 ~C3'-endo,non-pair-contact,ss-non-loop,cap-acceptor,splayed-apart 2263 A . A.A2459 0.008 syn,~C3'-endo,non-pair-contact,ss-non-loop,cap-acceptor,phosphate,splayed-apart 2264 U . A.U2460 0.009 ~C3'-endo,BI,non-stack,non-pair-contact,ss-non-loop,phosphate,splayed-apart 2265 A . A.A2461 0.005 turn,anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop 2266 A . A.A2462 0.009 ~C3'-endo,BI,non-stack,non-pair-contact,ss-non-loop,ribose-zipper,cap-donor,cap-acceptor,phosphate 2267 A . A.A2463 0.010 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop,ribose-zipper,cap-donor,cap-acceptor,phosphate 2268 A ) A.A2464 0.007 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,A-minor 2269 G ) A.G2465 0.017 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack 2270 C ) A.C2466 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2271 U ) A.U2467 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 2272 A . A.A2468 0.017 turn,~C2'-endo,non-stack,non-pair-contact,bulge,splayed-apart 2273 C . A.C2469 0.005 anti,~C3'-endo,non-pair-contact,bulge,splayed-apart 2274 C ) A.C2470 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,phosphate 2275 C ) A.C2471 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,multiplet,A-minor,ribose-zipper 2276 C . A.C2472 0.004 break,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,ss-non-loop,ribose-zipper 2277 A . A.A2488 0.007 syn,~C2'-endo,BI,non-pair-contact,ss-non-loop,splayed-apart 2278 U . A.U2489 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop,splayed-apart 2279 C ( A.C2490 0.004 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop 2280 U . A.U2491 0.010 anti,~C3'-endo,BI,non-stack,non-canonical,helix-end,internal-loop 2281 C . A.C2492 0.007 anti,~C3'-endo,BI,non-pair-contact,internal-loop 2282 C . A.C2493 0.008 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix-end,internal-loop 2283 C ( A.C2494 0.008 anti,~C2'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,internal-loop 2284 C . A.C2495 0.006 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 2285 C . A.C2496 0.003 anti,~C3'-endo,non-canonical,non-pair-contact,ss-non-loop 2286 A . A.A2497 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop 2287 A . A.A2498 0.010 break,anti,~C3'-endo,non-pair-contact,ss-non-loop 2288 C . A.C2512 0.006 ~C3'-endo,non-pair-contact,ss-non-loop 2289 G . A.G2513 0.009 syn,~C3'-endo,BI,non-pair-contact,ss-non-loop,phosphate 2290 G . A.G2514 0.008 syn,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop,phosphate 2291 G . A.G2515 0.010 anti,~C2'-endo,BI,non-pair-contact,ss-non-loop 2292 G ) A.G2516 0.012 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,internal-loop 2293 A . A.A2517 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 2294 G . A.G2518 0.024 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,phosphate 2295 G ) A.G2519 0.015 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,internal-loop,phosphate 2296 U . A.U2520 0.005 anti,~C3'-endo,BII,non-pair-contact,ss-non-loop,phosphate,splayed-apart 2297 U . A.U2521 0.008 turn,syn,~C3'-endo,BII,ss-non-loop,phosphate,splayed-apart 2298 U . A.U2522 0.004 anti,~C2'-endo,non-stack,ss-non-loop,splayed-apart 2299 G . A.G2523 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop,splayed-apart 2300 G . A.G2524 0.015 ~C3'-endo,BI,non-pair-contact,ss-non-loop 2301 C . A.C2525 0.004 anti,~C2'-endo,BI,non-pair-contact,ss-non-loop 2302 A . A.A2526 0.005 break,anti,~C3'-endo,non-pair-contact,ss-non-loop 2303 C . A.C2536 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,ss-non-loop 2304 G . A.G2537 0.006 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 2305 G . A.G2538 0.009 anti,~C3'-endo,non-pair-contact,ss-non-loop 2306 C . A.C2539 0.008 anti,~C3'-endo,BI,non-pair-contact,ss-non-loop 2307 U . A.U2540 0.006 anti,~C3'-endo,non-pair-contact,ss-non-loop 2308 C . A.C2541 0.003 anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate 2309 A ( A.A2542 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end 2310 U ( A.U2543 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 2311 C ( A.C2544 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,A-minor 2312 G ( A.G2545 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,A-minor 2313 C ( A.C2546 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart 2314 A . A.A2547 0.004 turn,syn,~C2'-endo,non-pair-contact,junction-loop,splayed-apart 2315 U . A.U2548 0.005 anti,~C2'-endo,BII,non-canonical,non-pair-contact,junction-loop,splayed-apart 2316 C ( A.C2549 0.007 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor,ribose-zipper 2317 C ( A.C2550 0.004 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor,ribose-zipper 2318 U ( A.U2551 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2319 G ( A.G2552 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor 2320 G ( A.G2553 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 2321 G ( A.G2554 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2322 G ( A.G2555 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2323 C ( A.C2556 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2324 U . A.U2557 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 2325 G . A.G2558 0.004 turn,syn,~C2'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 2326 U . A.U2559 0.004 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate,splayed-apart 2327 A . A.A2560 0.012 turn,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,cap-acceptor,splayed-apart 2328 G . A.G2561 0.009 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 2329 U . A.U2562 0.005 anti,~C3'-endo,non-pair-contact,hairpin-loop 2330 C . A.C2563 0.005 anti,~C3'-endo,non-pair-contact,hairpin-loop 2331 G . A.G2564 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop 2332 G ) A.G2565 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2333 U ) A.U2566 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2334 C ) A.C2567 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2335 C ) A.C2568 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 2336 C ) A.C2569 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,A-minor 2337 A . A.A2570 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,bulge 2338 A . A.A2571 0.005 turn,~C2'-endo,non-canonical,non-pair-contact,multiplet,bulge,phosphate 2339 G ) A.G2572 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,cap-donor 2340 G ) A.G2573 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 2341 G ) A.G2574 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,junction-loop,A-minor 2342 U . A.U2575 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 2343 U ( A.U2576 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 2344 G ( A.G2577 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2345 G ( A.G2578 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2346 G ( A.G2579 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2347 C ( A.C2580 0.003 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2348 U . A.U2581 0.002 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-acceptor 2349 G . A.G2582 0.004 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,hairpin-loop,cap-acceptor 2350 U . A.U2583 0.002 anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate 2351 U . A.U2584 0.005 turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 2352 C . A.C2585 0.003 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop 2353 G ) A.G2586 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2354 C ) A.C2587 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2355 C ) A.C2588 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2356 C ) A.C2589 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2357 A ) A.A2590 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2358 U . A.U2591 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 2359 U . A.U2592 0.004 u-turn,anti,~C3'-endo,BI,non-pair-contact,junction-loop,splayed-apart 2360 A . A.A2593 0.006 turn,u-turn,anti,~C3'-endo,non-pair-contact,junction-loop,A-minor,ribose-zipper,cap-acceptor,phosphate,splayed-apart 2361 A . A.A2594 0.008 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,A-minor,ribose-zipper 2362 A . A.A2595 0.006 turn,u-turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,junction-loop,phosphate,splayed-apart 2363 G ) A.G2596 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart 2364 C ) A.C2597 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,A-minor 2365 G ) A.G2598 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,A-minor,phosphate 2366 G ) A.G2599 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 2367 U ) A.U2600 0.007 break,anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end 2368 C . A.C2615 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,ss-non-loop 2369 A . A.A2616 0.004 anti,~C3'-endo,non-pair-contact,ss-non-loop 2370 G ( A.G2617 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 2371 A ( A.A2618 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2372 A ( A.A2619 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2373 C ( A.C2620 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2374 G ( A.G2621 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2375 U ( A.U2622 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2376 C ( A.C2623 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 2377 G . A.G2624 0.011 u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate 2378 U . A.U2625 0.008 turn,u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,phosphate 2379 G . A.G2626 0.009 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,ribose-zipper,phosphate 2380 A . A.A2627 0.006 turn,u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,ribose-zipper,phosphate 2381 G ) A.G2628 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,hairpin-loop 2382 A ) A.A2629 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2383 C ) A.C2630 0.005 anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 2384 A . A.A2631 0.003 turn,anti,~C2'-endo,non-stack,bulge,splayed-apart 2385 G ) A.G2632 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 2386 U ) A.U2633 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2387 U ) A.U2634 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2388 C ) A.C2635 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 2389 G . A.G2636 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,ss-non-loop 2390 G . A.G2637 0.009 anti,~C3'-endo,BII,non-pair-contact,ss-non-loop,splayed-apart 2391 U a A.U2638 0.003 pseudoknotted,anti,~C2'-endo,non-stack,isolated-canonical,splayed-apart 2392 C . A.C2639 0.005 anti,~C2'-endo,non-stack,ss-non-loop,splayed-apart 2393 C ) A.C2640 0.008 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 2394 C ) A.C2641 0.003 anti,~C3'-endo,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 2395 U . A.U2642 0.007 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart 2396 A . A.A2643 0.007 anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,splayed-apart 2397 U ) A.U2644 0.006 anti,~C3'-endo,BI,canonical,non-canonical,helix,stem-end,coaxial-stack,multiplet,internal-loop 2398 C ) A.C2645 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2399 C ) A.C2646 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2400 G ) A.G2647 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2401 U ) A.U2648 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2402 C ) A.C2649 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2403 G ) A.G2650 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2404 C ) A.C2651 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2405 G ) A.G2652 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2406 G ) A.G2653 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,A-minor 2407 G ) A.G2654 0.015 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,A-minor 2408 C [ A.C2655 0.009 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,multiplet 2409 G . A.G2656 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop 2410 C . A.C2657 0.005 anti,~C3'-endo,non-pair-contact,ss-non-loop,phosphate,splayed-apart 2411 A . A.A2658 0.007 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix-end,ss-non-loop,phosphate,splayed-apart 2412 G ( A.G2659 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,A-minor,splayed-apart 2413 G ( A.G2660 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2414 A ( A.A2661 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2415 A ( A.A2662 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2416 A ( A.A2663 0.013 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2417 U ( A.U2664 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2418 U ( A.U2665 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2419 U . A.U2666 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2420 G . A.G2667 0.013 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop 2421 A . A.A2668 0.011 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2422 G ( A.G2669 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2423 A ( A.A2670 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2424 G ( A.G2671 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2425 G ( A.G2672 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2426 A . A.A2673 0.014 anti,~C3'-endo,BI,non-pair-contact,junction-loop 2427 G . A.G2674 0.011 anti,~C2'-endo,non-pair-contact,junction-loop,cap-acceptor,splayed-apart 2428 C ( A.C2675 0.005 anti,~C3'-endo,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 2429 U ( A.U2676 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,cap-donor,phosphate 2430 G ( A.G2677 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2431 U ( A.U2678 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2432 C ( A.C2679 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2433 C ( A.C2680 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2434 U . A.U2681 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2435 U . A.U2682 0.003 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 2436 A . A.A2683 0.004 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop 2437 G . A.G2684 0.002 turn,~C2'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 2438 U . A.U2685 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2439 A . A.A2686 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2440 C ( A.C2687 0.008 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,internal-loop,A-minor 2441 G . A.G2688 0.011 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,cap-donor,cap-acceptor,splayed-apart 2442 A . A.A2689 0.005 turn,u-turn,syn,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 2443 G . A.G2690 0.005 u-turn,anti,~C3'-endo,non-pair-contact,hairpin-loop,cap-donor,phosphate 2444 A . A.A2691 0.009 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop,phosphate 2445 G ) A.G2692 0.013 anti,~C3'-endo,BI,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,internal-loop,A-minor 2446 G . A.G2693 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2447 A . A.A2694 0.008 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 2448 C . A.C2695 0.011 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 2449 C . A.C2696 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2450 G . A.G2697 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2451 G ) A.G2698 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2452 G ) A.G2699 0.019 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2453 A ) A.A2700 0.011 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2454 U ) A.U2701 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2455 G ) A.G2702 0.013 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2456 G ) A.G2703 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2457 A . A.A2704 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 2458 C ( A.C2705 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2459 G ( A.G2706 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2460 C ( A.C2707 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2461 A ( A.A2708 0.015 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2462 C ( A.C2709 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate 2463 C . A.C2710 0.008 anti,~C2'-endo,BII,non-stack,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate 2464 G . A.G2711 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop 2465 C . A.C2712 0.007 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 2466 U ( A.U2713 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,phosphate 2467 G ( A.G2714 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2468 G ( A.G2715 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2469 U ( A.U2716 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2470 G . A.G2717 0.016 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart 2471 U . A.U2718 0.009 anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 2472 A . A.A2719 0.009 turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 2473 C ( A.C2720 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,cap-donor,splayed-apart 2474 C ( A.C2721 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2475 A ( A.A2722 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 2476 G ( A.G2723 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2477 U ( A.U2724 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,cap-donor 2478 U ( A.U2725 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2479 G ( A.G2726 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2480 U ( A.U2727 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2481 U ( A.U2728 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2482 C ( A.C2729 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2483 U ( A.U2730 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,kissing-loop 2484 G . A.G2731 0.016 anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,kissing-loop 2485 C } A.C2732 0.007 pseudoknotted,anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,hairpin-loop,kissing-loop 2486 C . A.C2733 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,kissing-loop 2487 A . A.A2734 0.011 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,kissing-loop 2488 A ) A.A2735 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,kissing-loop 2489 G ) A.G2736 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2490 G ) A.G2737 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2491 G ) A.G2738 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2492 C ) A.C2739 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2493 A ) A.A2740 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 2494 U . A.U2741 0.006 turn,anti,~C2'-endo,non-stack,non-pair-contact,bulge,phosphate,splayed-apart 2495 C . A.C2742 0.008 turn,anti,~C2'-endo,non-pair-contact,bulge,splayed-apart 2496 G ) A.G2743 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge,splayed-apart 2497 C ) A.C2744 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate 2498 U ) A.U2745 0.009 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet 2499 G ) A.G2746 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2500 G ) A.G2747 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2501 G . A.G2748 0.012 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2502 U . A.U2749 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2503 A . A.A2750 0.013 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2504 G ) A.G2751 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2505 C ) A.C2752 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2506 U ) A.U2753 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2507 A ) A.A2754 0.010 anti,~C2'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 2508 U . A.U2755 0.009 turn,anti,~C2'-endo,non-pair-contact,internal-loop,phosphate 2509 G ) A.G2756 0.012 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop 2510 U ) A.U2757 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2511 G ) A.G2758 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2512 C ) A.C2759 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2513 G ) A.G2760 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2514 G . A.G2761 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop,splayed-apart 2515 A . A.A2762 0.005 anti,~C3'-endo,BI,non-pair-contact,junction-loop,splayed-apart 2516 C . A.C2763 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 2517 G ( A.G2764 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2518 G ( A.G2765 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2519 G ( A.G2766 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2520 A . A.A2767 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2521 U . A.U2768 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2522 A . A.A2769 0.005 anti,~C3'-endo,non-pair-contact,internal-loop,A-minor,phosphate 2523 A . A.A2770 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,A-minor 2524 G ( A.G2771 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2525 U ( A.U2772 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2526 G ( A.G2773 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2527 C ( A.C2774 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2528 U . A.U2775 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,hairpin-loop 2529 G . A.G2776 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop 2530 A . A.A2777 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop 2531 A . A.A2778 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate 2532 A . A.A2779 0.005 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,splayed-apart 2533 G } A.G2780 0.008 pseudoknotted,turn,syn,~C2'-endo,isolated-canonical,non-pair-contact,hairpin-loop,phosphate,splayed-apart 2534 C . A.C2781 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,splayed-apart 2535 A . A.A2782 0.007 anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop 2536 U . A.U2783 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,hairpin-loop,splayed-apart 2537 C . A.C2784 0.005 turn,anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,splayed-apart 2538 U . A.U2785 0.007 anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop,phosphate,splayed-apart 2539 A . A.A2786 0.015 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,hairpin-loop,phosphate 2540 A . A.A2787 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,hairpin-loop 2541 G ) A.G2788 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2542 C ) A.C2789 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2543 A ) A.A2790 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2544 U ) A.U2791 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2545 G . A.G2792 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2546 A . A.A2793 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2547 A . A.A2794 0.008 turn,syn,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate 2548 G . A.G2795 0.013 syn,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2549 C ) A.C2796 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2550 C ) A.C2797 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2551 C ) A.C2798 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2552 C . A.C2799 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,junction-loop 2553 C ) A.C2800 0.007 anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end,coaxial-stack,junction-loop 2554 C ) A.C2801 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2555 U ) A.U2802 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2556 C ) A.C2803 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2557 A . A.A2804 0.010 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2558 A . A.A2805 0.009 anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,phosphate,splayed-apart 2559 G ] A.G2806 0.011 pseudoknotted,turn,anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart 2560 A . A.A2807 0.009 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 2561 U . A.U2808 0.011 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,cap-donor,phosphate,splayed-apart 2562 G . A.G2809 0.005 turn,anti,~C2'-endo,non-stack,internal-loop,splayed-apart 2563 A . A.A2810 0.009 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,internal-loop,cap-acceptor,splayed-apart 2564 G ) A.G2811 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart 2565 A ) A.A2812 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2566 U ) A.U2813 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2567 U ) A.U2814 0.009 anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack 2568 U ) A.U2815 0.006 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem,coaxial-stack 2569 C ) A.C2816 0.009 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,ribose-zipper 2570 C ) A.C2817 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,A-minor,ribose-zipper 2571 C ( A.C2818 0.008 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix-end,junction-loop 2572 A . A.A2819 0.007 anti,~C3'-endo,non-pair-contact,junction-loop,splayed-apart 2573 U ( A.U2820 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 2574 U ( A.U2821 0.007 anti,~C3'-endo,BI,non-stack,canonical,helix,stem,coaxial-stack 2575 C ( A.C2822 0.008 anti,~C3'-endo,non-stack,canonical,helix,stem,coaxial-stack 2576 C ( A.C2823 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2577 G . A.G2824 0.008 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 2578 C . A.C2825 0.005 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate,splayed-apart 2579 A . A.A2826 0.004 u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop 2580 A . A.A2827 0.009 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 2581 G ) A.G2828 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2582 G ) A.G2829 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2583 A ) A.A2830 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2584 A ) A.A2831 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2585 G . A.G2832 0.009 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 2586 U . A.U2833 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 2587 A . A.A2834 0.009 anti,~C3'-endo,non-pair-contact,junction-loop,A-minor,ribose-zipper,phosphate 2588 A . A.A2835 0.012 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop,A-minor,ribose-zipper 2589 G ( A.G2836 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 2590 A ( A.A2837 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2591 U ( A.U2838 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2592 C ( A.C2839 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2593 C ( A.C2840 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2594 C ( A.C2841 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor,phosphate 2595 U ( A.U2842 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2596 G ( A.G2843 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2597 A ( A.A2844 0.012 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2598 A . A.A2845 0.008 turn,syn,~C2'-endo,non-stack,hairpin-loop,cap-acceptor 2599 A . A.A2846 0.010 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,phosphate 2600 G . A.G2847 0.008 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate,splayed-apart 2601 A . A.A2848 0.010 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,A-minor,phosphate,splayed-apart 2602 U . A.U2849 0.007 anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,phosphate 2603 G . A.G2850 0.014 syn,~C3'-endo,non-pair-contact,hairpin-loop,cap-acceptor,phosphate 2604 A . A.A2851 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,hairpin-loop,cap-donor 2605 U ) A.U2852 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2606 C ) A.C2853 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2607 A ) A.A2854 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2608 G ) A.G2855 0.011 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,multiplet,A-minor 2609 G ) A.G2856 0.012 anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 2610 U . A.U2857 0.008 anti,~C2'-endo,non-pair-contact,junction-loop,cap-donor,phosphate,splayed-apart 2611 U . A.U2858 0.004 turn,anti,~C2'-endo,non-stack,junction-loop,splayed-apart 2612 G . A.G2859 0.012 ~C2'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,cap-acceptor,phosphate,splayed-apart 2613 A . A.A2860 0.008 turn,anti,~C2'-endo,BII,non-canonical,non-pair-contact,junction-loop,phosphate 2614 U ( A.U2861 0.008 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2615 A ( A.A2862 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2616 G ( A.G2863 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2617 G ( A.G2864 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2618 U ( A.U2865 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2619 C ( A.C2866 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2620 U ( A.U2867 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2621 G ( A.G2868 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2622 A . A.A2869 0.011 ~C3'-endo,non-pair-contact,internal-loop 2623 G ( A.G2870 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2624 G ( A.G2871 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2625 U ( A.U2872 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2626 G . A.G2873 0.014 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 2627 G . A.G2874 0.008 anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate,splayed-apart 2628 A . A.A2875 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,phosphate,splayed-apart 2629 A . A.A2876 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop 2630 G ( A.G2877 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2631 U ( A.U2878 0.007 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2632 G ( A.G2879 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2633 U ( A.U2880 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2634 G ( A.G2881 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop 2635 G . A.G2882 0.014 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,cap-acceptor,splayed-apart 2636 C . A.C2883 0.007 turn,u-turn,anti,~C3'-endo,BI,non-pair-contact,hairpin-loop,splayed-apart 2637 G . A.G2884 0.010 u-turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,hairpin-loop,ribose-zipper,cap-donor,phosphate 2638 A . A.A2885 0.007 u-turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,A-minor,ribose-zipper,cap-donor,phosphate 2639 C ) A.C2886 0.005 anti,~C3'-endo,BI,non-stack,canonical,non-pair-contact,helix,stem-end,coaxial-stack,hairpin-loop,cap-acceptor 2640 A ) A.A2887 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2641 C ) A.C2888 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2642 A ) A.A2889 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2643 U ) A.U2890 0.008 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate 2644 G . A.G2891 0.010 anti,~C2'-endo,BII,non-canonical,non-pair-contact,helix,multiplet,internal-loop,splayed-apart 2645 G . A.G2892 0.006 turn,anti,~C2'-endo,non-pair-contact,internal-loop,splayed-apart 2646 A . A.A2893 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,phosphate 2647 G ) A.G2894 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2648 C ) A.C2895 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2649 U ) A.U2896 0.006 anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 2650 G . A.G2897 0.011 anti,~C3'-endo,BI,non-stack,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor,splayed-apart 2651 A . A.A2898 0.008 anti,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix,internal-loop,splayed-apart 2652 C ) A.C2899 0.007 anti,~C3'-endo,BI,non-stack,canonical,helix,stem-end,coaxial-stack,internal-loop,splayed-apart 2653 A ) A.A2900 0.011 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2654 G ) A.G2901 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2655 A ) A.A2902 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2656 U ) A.U2903 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2657 A . A.A2904 0.013 turn,syn,~C2'-endo,BII,non-pair-contact,bulge,phosphate 2658 C ) A.C2905 0.010 turn,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2659 U ) A.U2906 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2660 A ) A.A2907 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2661 A . A.A2908 0.007 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix-end,multiplet,junction-loop,A-minor,phosphate,splayed-apart 2662 U . A.U2909 0.003 anti,~C3'-endo,BI,non-pair-contact,junction-loop,phosphate,splayed-apart 2663 C . A.C2910 0.001 anti,~C3'-endo,BI,non-pair-contact,junction-loop 2664 G ) A.G2911 0.002 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2665 A ) A.A2912 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2666 U ) A.U2913 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2667 C ) A.C2914 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2668 G . A.G2915 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,junction-loop 2669 A . A.A2916 0.011 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,junction-loop 2670 G . A.G2917 0.017 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,junction-loop 2671 G ) A.G2918 0.010 ~C3'-endo,isolated-canonical,non-pair-contact,helix-end,junction-loop,splayed-apart 2672 A ) A.A2919 0.014 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,splayed-apart 2673 C ) A.C2920 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2674 U ) A.U2921 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 2675 U ) A.U2922 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2676 A ) A.A2923 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2677 A ) A.A2924 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,cap-acceptor 2678 C . A.C2925 0.004 anti,~C3'-endo,non-pair-contact,ss-non-loop,cap-donor 2679 U ( B.U3 0.006 anti,~C2'-endo,BI,non-stack,canonical,non-pair-contact,helix-end,stem-end,phosphate 2680 G ( B.G4 0.012 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,phosphate 2681 G ( B.G5 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2682 U ( B.U6 0.004 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem 2683 G ( B.G7 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2684 G ( B.G8 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 2685 C ( B.C9 0.008 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,junction-loop,splayed-apart 2686 G . B.G10 0.003 anti,~C3'-endo,BI,junction-loop,splayed-apart 2687 A . B.A11 0.005 turn,syn,~C3'-endo,BI,non-stack,non-pair-contact,junction-loop,cap-donor,phosphate,splayed-apart 2688 U . B.U12 0.004 turn,anti,~C2'-endo,non-stack,non-pair-contact,junction-loop,phosphate,splayed-apart 2689 A . B.A13 0.006 syn,~C2'-endo,non-pair-contact,junction-loop,cap-donor,cap-acceptor,phosphate,splayed-apart 2690 G ( B.G14 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,splayed-apart 2691 C ( B.C15 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 2692 G ( B.G16 0.006 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2693 A ( B.A17 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2694 A ( B.A18 0.009 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2695 G ( B.G19 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2696 A ( B.A20 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 2697 G ( B.G21 0.008 anti,~C3'-endo,BII,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2698 G . B.G22 0.006 anti,~C3'-endo,BII,non-canonical,non-pair-contact,helix,internal-loop 2699 U . B.U23 0.009 turn,anti,~C3'-endo,non-pair-contact,internal-loop 2700 C . B.C24 0.004 anti,~C3'-endo,BI,non-pair-contact,internal-loop 2701 A . B.A25 0.003 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate 2702 C . B.C26 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,phosphate 2703 A ( B.A27 0.004 anti,~C3'-endo,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,phosphate 2704 C . B.C28 0.011 anti,~C3'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor,phosphate 2705 C ( B.C29 0.010 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 2706 C ( B.C30 0.006 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2707 G . B.G31 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor 2708 U . B.U32 0.005 turn,anti,~C3'-endo,non-pair-contact,internal-loop,cap-donor 2709 U . B.U33 0.004 turn,anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,cap-acceptor 2710 C . B.C34 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,cap-donor,cap-acceptor 2711 C . B.C35 0.003 anti,~C3'-endo,non-pair-contact,internal-loop 2712 C ( B.C36 0.007 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,internal-loop,phosphate 2713 A . B.A37 0.013 syn,~C3'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 2714 U . B.U38 0.007 ~C2'-endo,non-stack,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,splayed-apart 2715 A . B.A39 0.006 turn,syn,~C2'-endo,non-stack,non-canonical,non-pair-contact,helix-end,hairpin-loop,splayed-apart 2716 C . B.C40 0.003 turn,anti,~C2'-endo,non-stack,non-canonical,non-pair-contact,hairpin-loop,splayed-apart 2717 C . B.C41 0.003 anti,~C3'-endo,non-stack,non-pair-contact,hairpin-loop,phosphate,splayed-apart 2718 G ) B.G42 0.011 turn,~C2'-endo,isolated-canonical,non-canonical,non-pair-contact,helix-end,multiplet,hairpin-loop,internal-loop,splayed-apart 2719 A . B.A43 0.002 turn,~C3'-endo,non-pair-contact,internal-loop,splayed-apart 2720 A . B.A44 0.001 anti,~C2'-endo,non-canonical,non-pair-contact,internal-loop,phosphate 2721 C . B.C45 0.003 syn,~C2'-endo,non-canonical,non-pair-contact,helix-end,multiplet,internal-loop,cap-donor,phosphate,splayed-apart 2722 A . B.A46 0.005 syn,~C2'-endo,non-stack,non-pair-contact,internal-loop,cap-acceptor,splayed-apart 2723 C . B.C47 0.007 anti,~C3'-endo,non-pair-contact,internal-loop,phosphate,splayed-apart 2724 G ) B.G48 0.018 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop,phosphate,splayed-apart 2725 G ) B.G49 0.010 anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,internal-loop,A-minor 2726 A . B.A50 0.010 anti,~C2'-endo,non-canonical,non-pair-contact,internal-loop 2727 A . B.A51 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor 2728 G . B.G52 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop,A-minor 2729 U ) B.U53 0.006 anti,~C3'-endo,BII,isolated-canonical,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor 2730 U . B.U54 0.004 turn,anti,~C2'-endo,non-canonical,non-pair-contact,helix,multiplet,internal-loop,A-minor 2731 A . B.A55 0.006 turn,anti,~C3'-endo,BI,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor 2732 A . B.A56 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,multiplet,internal-loop,A-minor 2733 G . B.G57 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,multiplet,internal-loop 2734 C ) B.C58 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2735 U ) B.U59 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2736 C ) B.C60 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2737 U ) B.U61 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2738 U ) B.U62 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2739 C ) B.C63 0.004 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,bulge 2740 A . B.A64 0.013 turn,~C3'-endo,non-pair-contact,bulge,phosphate 2741 G ) B.G65 0.009 turn,anti,~C3'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem-end,coaxial-stack,multiplet,bulge 2742 C ) B.C66 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop,phosphate 2743 G . B.G67 0.009 anti,~C3'-endo,BI,non-pair-contact,junction-loop 2744 C ( B.C68 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2745 C ( B.C69 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2746 G . B.G70 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2747 A . B.A71 0.008 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2748 U . B.U72 0.003 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2749 G . B.G73 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2750 G . B.G74 0.008 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2751 U . B.U75 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2752 A . B.A76 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper 2753 G . B.G77 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,ribose-zipper 2754 U ( B.U78 0.005 anti,~C3'-endo,BI,isolated-canonical,non-pair-contact,helix,internal-loop 2755 C . B.C79 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2756 G ( B.G80 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2757 G ( B.G81 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2758 G ( B.G82 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2759 G ( B.G83 0.010 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 2760 G ( B.G84 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack,splayed-apart 2761 U . B.U85 0.003 turn,anti,~C2'-endo,non-stack,ss-non-loop,splayed-apart 2762 U . B.U86 0.008 break,~C2'-endo,non-stack,non-pair-contact,ss-non-loop 2763 C ) B.C88 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 2764 C ) B.C89 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2765 C ) B.C90 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2766 C ) B.C91 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 2767 C ) B.C92 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2768 U . B.U93 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2769 G ) B.G94 0.008 anti,~C3'-endo,isolated-canonical,non-pair-contact,helix,internal-loop,cap-acceptor 2770 U . B.U95 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop,cap-donor 2771 G . B.G96 0.005 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2772 A . B.A97 0.009 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2773 G . B.G98 0.006 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2774 A . B.A99 0.005 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2775 G . B.G100 0.007 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2776 U . B.U101 0.004 anti,~C3'-endo,BI,non-canonical,non-pair-contact,helix,internal-loop 2777 A . B.A102 0.004 anti,~C3'-endo,non-canonical,non-pair-contact,helix,internal-loop 2778 G ) B.G103 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,internal-loop 2779 G ) B.G104 0.005 anti,~C3'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,junction-loop 2780 A . B.A105 0.006 anti,~C3'-endo,non-pair-contact,junction-loop,phosphate 2781 C . B.C106 0.004 turn,anti,~C2'-endo,non-canonical,non-pair-contact,multiplet,junction-loop,phosphate,splayed-apart 2782 G ) B.G107 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix-end,stem-end,junction-loop,cap-acceptor,splayed-apart 2783 C ) B.C108 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 2784 C ) B.C109 0.006 anti,~C3'-endo,canonical,non-pair-contact,helix,stem 2785 G ) B.G110 0.010 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem 2786 C ) B.C111 0.008 anti,~C3'-endo,canonical,non-canonical,non-pair-contact,helix,stem 2787 C ) B.C112 0.007 anti,~C3'-endo,canonical,non-pair-contact,helix,stem,phosphate 2788 A ) B.A113 0.018 anti,~C3'-endo,canonical,non-pair-contact,helix-end,stem-end,cap-acceptor 2789 A . B.A114 0.004 anti,~C2'-endo,non-pair-contact,ss-non-loop,cap-donor 2790 g . W.GNP501 0.012 modified,break,anti,~C2'-endo,non-stack,ss-non-loop 2791 g . W.GNP502 0.012 modified,anti,~C3'-endo,non-stack,non-pair-contact,ss-non-loop **************************************************************************** List of 21 additional files 1 dssr-pairs.pdb -- an ensemble of base pairs 2 dssr-multiplets.pdb -- an ensemble of multiplets 3 dssr-stems.pdb -- an ensemble of stems 4 dssr-helices.pdb -- an ensemble of helices (coaxial stacking) 5 dssr-hairpins.pdb -- an ensemble of hairpin loops 6 dssr-bulges.pdb -- an ensemble of bulges 7 dssr-iloops.pdb -- an ensemble of internal loops 8 dssr-junctions.pdb -- an ensemble of junctions (multi-branch) 9 dssr-2ndstrs.bpseq -- secondary structure in bpseq format 10 dssr-2ndstrs.ct -- secondary structure in connectivity table format 11 dssr-2ndstrs.dbn -- secondary structure in dot-bracket notation 12 dssr-torsions.txt -- backbone torsion angles and suite names 13 dssr-splays.pdb -- an ensemble of splayed-apart units 14 dssr-Aminors.pdb -- an ensemble of A minor motifs (types I and II) 15 dssr-Kturns.pdb -- an ensemble of kink-turn motifs 16 dssr-stacks.pdb -- an ensemble of base stacks 17 dssr-atom2bases.pdb -- an ensemble of atom-base stacking interactions 18 dssr-rotmat.txt -- position vector and rotation matrix 19 dssr-viewV.pdb -- vertical view of the principal moment of inertia 20 dssr-viewH.pdb -- horizontal view of the principal moment of inertia 21 dssr-viewT.pdb -- top view of the principal moment of inertia