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      "index": 743,
      "atom1_serNum": 6103,
      "atom2_serNum": 6148,
      "donAcc_type": "questionable",
      "distance": 3.167,
      "atom1_id": "///C/37/OP1",
      "atom2_id": "///C/39/OP1",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 744,
      "atom1_serNum": 6135,
      "atom2_serNum": 6168,
      "donAcc_type": "acceptable",
      "distance": 3.009,
      "atom1_id": "///C/38/O2'",
      "atom2_id": "///C/40/OP1",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 745,
      "atom1_serNum": 6157,
      "atom2_serNum": 6169,
      "donAcc_type": "acceptable",
      "distance": 3.080,
      "atom1_id": "///C/39/O2'",
      "atom2_id": "///C/40/OP2",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 746,
      "atom1_serNum": 6177,
      "atom2_serNum": 6193,
      "donAcc_type": "acceptable",
      "distance": 3.174,
      "atom1_id": "///C/40/O2'",
      "atom2_id": "///C/41/O4'",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 747,
      "atom1_serNum": 6237,
      "atom2_serNum": 6250,
      "donAcc_type": "acceptable",
      "distance": 2.993,
      "atom1_id": "///C/43/O2'",
      "atom2_id": "///C/44/O5'",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 748,
      "atom1_serNum": 6237,
      "atom2_serNum": 6253,
      "donAcc_type": "acceptable",
      "distance": 2.751,
      "atom1_id": "///C/43/O2'",
      "atom2_id": "///C/44/O4'",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 749,
      "atom1_serNum": 6336,
      "atom2_serNum": 6379,
      "donAcc_type": "questionable",
      "distance": 3.237,
      "atom1_id": "///C/48/OP1",
      "atom2_id": "///C/50/OP1",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 750,
      "atom1_serNum": 6345,
      "atom2_serNum": 6579,
      "donAcc_type": "acceptable",
      "distance": 3.143,
      "atom1_id": "///C/48/O2'",
      "atom2_id": "///C/59/O2'",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 751,
      "atom1_serNum": 6372,
      "atom2_serNum": 6714,
      "donAcc_type": "standard",
      "distance": 2.940,
      "atom1_id": "///C/49/O6",
      "atom2_id": "///C/65/N4",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 752,
      "atom1_serNum": 6392,
      "atom2_serNum": 6694,
      "donAcc_type": "standard",
      "distance": 3.484,
      "atom1_id": "///C/50/O2",
      "atom2_id": "///C/64/N2",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 753,
      "atom1_serNum": 6393,
      "atom2_serNum": 6692,
      "donAcc_type": "standard",
      "distance": 3.643,
      "atom1_id": "///C/50/N3",
      "atom2_id": "///C/64/N1",
      "atom_pair": "N:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 754,
      "atom1_serNum": 6395,
      "atom2_serNum": 6691,
      "donAcc_type": "standard",
      "distance": 3.751,
      "atom1_id": "///C/50/N4",
      "atom2_id": "///C/64/O6",
      "atom_pair": "N:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 755,
      "atom1_serNum": 6412,
      "atom2_serNum": 6671,
      "donAcc_type": "standard",
      "distance": 3.191,
      "atom1_id": "///C/51/O2",
      "atom2_id": "///C/63/N2",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 756,
      "atom1_serNum": 6428,
      "atom2_serNum": 6447,
      "donAcc_type": "acceptable",
      "distance": 2.982,
      "atom1_id": "///C/52/O2'",
      "atom2_id": "///C/53/O4'",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 757,
      "atom1_serNum": 6436,
      "atom2_serNum": 6646,
      "donAcc_type": "standard",
      "distance": 3.288,
      "atom1_id": "///C/52/N1",
      "atom2_id": "///C/62/N3",
      "atom_pair": "N:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 758,
      "atom1_serNum": 6438,
      "atom2_serNum": 6645,
      "donAcc_type": "standard",
      "distance": 2.376,
      "atom1_id": "///C/52/N2",
      "atom2_id": "///C/62/O2",
      "atom_pair": "N:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 759,
      "atom1_serNum": 6438,
      "atom2_serNum": 6646,
      "donAcc_type": "standard",
      "distance": 3.267,
      "atom1_id": "///C/52/N2",
      "atom2_id": "///C/62/N3",
      "atom_pair": "N:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 760,
      "atom1_serNum": 6458,
      "atom2_serNum": 6628,
      "donAcc_type": "standard",
      "distance": 2.525,
      "atom1_id": "///C/53/O6",
      "atom2_id": "///C/61/N4",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 761,
      "atom1_serNum": 6459,
      "atom2_serNum": 6626,
      "donAcc_type": "standard",
      "distance": 2.775,
      "atom1_id": "///C/53/N1",
      "atom2_id": "///C/61/N3",
      "atom_pair": "N:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 762,
      "atom1_serNum": 6461,
      "atom2_serNum": 6625,
      "donAcc_type": "standard",
      "distance": 2.981,
      "atom1_id": "///C/53/N2",
      "atom2_id": "///C/61/O2",
      "atom_pair": "N:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 763,
      "atom1_serNum": 6478,
      "atom2_serNum": 6564,
      "donAcc_type": "standard",
      "distance": 3.112,
      "atom1_id": "///C/54/O2",
      "atom2_id": "///C/58/N6",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 764,
      "atom1_serNum": 6478,
      "atom2_serNum": 6625,
      "donAcc_type": "questionable",
      "distance": 2.904,
      "atom1_id": "///C/54/O2",
      "atom2_id": "///C/61/O2",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 765,
      "atom1_serNum": 6479,
      "atom2_serNum": 6561,
      "donAcc_type": "standard",
      "distance": 3.059,
      "atom1_id": "///C/54/N3",
      "atom2_id": "///C/58/N7",
      "atom_pair": "N:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 766,
      "atom1_serNum": 6494,
      "atom2_serNum": 6538,
      "donAcc_type": "acceptable",
      "distance": 2.654,
      "atom1_id": "///C/55/O2'",
      "atom2_id": "///C/57/N7",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 767,
      "atom1_serNum": 6499,
      "atom2_serNum": 6549,
      "donAcc_type": "standard",
      "distance": 2.594,
      "atom1_id": "///C/55/N3",
      "atom2_id": "///C/58/OP2",
      "atom_pair": "N:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 768,
      "atom1_serNum": 6557,
      "atom2_serNum": 6593,
      "donAcc_type": "acceptable",
      "distance": 2.262,
      "atom1_id": "///C/58/O2'",
      "atom2_id": "///C/60/OP2",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 769,
      "atom1_serNum": 6592,
      "atom2_serNum": 6628,
      "donAcc_type": "standard",
      "distance": 3.518,
      "atom1_id": "///C/60/OP1",
      "atom2_id": "///C/61/N4",
      "atom_pair": "O:N",
      "residue_pair": "nt:nt"
    },
    {
      "index": 770,
      "atom1_serNum": 6641,
      "atom2_serNum": 6657,
      "donAcc_type": "acceptable",
      "distance": 3.407,
      "atom1_id": "///C/62/O2'",
      "atom2_id": "///C/63/O4'",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 771,
      "atom1_serNum": 6684,
      "atom2_serNum": 6703,
      "donAcc_type": "acceptable",
      "distance": 2.721,
      "atom1_id": "///C/64/O2'",
      "atom2_id": "///C/65/O4'",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 772,
      "atom1_serNum": 6857,
      "atom2_serNum": 6871,
      "donAcc_type": "acceptable",
      "distance": 2.837,
      "atom1_id": "///C/72/O2'",
      "atom2_id": "///C/73/OP1",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    },
    {
      "index": 773,
      "atom1_serNum": 6922,
      "atom2_serNum": 6935,
      "donAcc_type": "acceptable",
      "distance": 2.698,
      "atom1_id": "///C/75/O2'",
      "atom2_id": "///C/76/O5'",
      "atom_pair": "O:O",
      "residue_pair": "nt:nt"
    }
  ],
  "refCoords": {
    "purine": [
      "   12 ATOMS,    12 BONDS",
      "    1 N      -2.2500   5.0000   0.4000",
      "    2 N      -2.2500  -0.5000   0.4000",
      "    3 N      -2.2500  -0.5000  -0.4000",
      "    4 N      -2.2500   5.0000  -0.4000",
      "    5 C       1.2500   5.0000   0.4000",
      "    6 C       1.2500  -0.5000   0.4000",
      "    7 C       1.2500  -0.5000  -0.4000",
      "    8 C       1.2500   5.0000  -0.4000",
      "    9 C      -2.2500   5.0000   0.4000",
      "   10 C      -2.2500  -0.5000   0.4000",
      "   11 C      -2.2500  -0.5000  -0.4000",
      "   12 C      -2.2500   5.0000  -0.4000",
      "    1     1     2",
      "    2     2     3",
      "    3     3     4",
      "    4     4     1",
      "    5     5     6",
      "    6     6     7",
      "    7     7     8",
      "    8     5     8",
      "    9     9     5",
      "   10    10     6",
      "   11    11     7",
      "   12    12     8"
    ],
    "pyrimidine": [
      "   12 ATOMS,    12 BONDS",
      "    1 N      -2.2500   5.0000   0.4000",
      "    2 N      -2.2500   1.0000   0.4000",
      "    3 N      -2.2500   1.0000  -0.4000",
      "    4 N      -2.2500   5.0000  -0.4000",
      "    5 C       1.2500   5.0000   0.4000",
      "    6 C       1.2500   1.0000   0.4000",
      "    7 C       1.2500   1.0000  -0.4000",
      "    8 C       1.2500   5.0000  -0.4000",
      "    9 C      -2.2500   5.0000   0.4000",
      "   10 C      -2.2500   1.0000   0.4000",
      "   11 C      -2.2500   1.0000  -0.4000",
      "   12 C      -2.2500   5.0000  -0.4000",
      "    1     1     2",
      "    2     2     3",
      "    3     3     4",
      "    4     4     1",
      "    5     5     6",
      "    6     6     7",
      "    7     7     8",
      "    8     5     8",
      "    9     9     5",
      "   10    10     6",
      "   11    11     7",
      "   12    12     8"
    ],
    "wc_pair": [
      "   12 ATOMS,    12 BONDS",
      "    1 N      -2.2500   5.0000   0.4000",
      "    2 N      -2.2500  -5.0000   0.4000",
      "    3 N      -2.2500  -5.0000  -0.4000",
      "    4 N      -2.2500   5.0000  -0.4000",
      "    5 C       2.2500   5.0000   0.4000",
      "    6 C       2.2500  -5.0000   0.4000",
      "    7 C       2.2500  -5.0000  -0.4000",
      "    8 C       2.2500   5.0000  -0.4000",
      "    9 C      -2.2500   5.0000   0.4000",
      "   10 C      -2.2500  -5.0000   0.4000",
      "   11 C      -2.2500  -5.0000  -0.4000",
      "   12 C      -2.2500   5.0000  -0.4000",
      "    1     1     2",
      "    2     2     3",
      "    3     3     4",
      "    4     4     1",
      "    5     5     6",
      "    6     6     7",
      "    7     7     8",
      "    8     5     8",
      "    9     9     5",
      "   10    10     6",
      "   11    11     7",
      "   12    12     8"
    ]
  },
  "metadata": {
    "license": "http://innovation.columbia.edu/technologies/CU20391",
    "url": "http://x3dna.org/",
    "url_alt": "http://home.x3dna.org/",
    "forum": "http://forum.x3dna.org/",
    "citation": "Lu et al. (2015). 'DSSR: an integrated software tool for dissecting the spatial structure of RNA.' Nucleic Acids Res., 43(21):e142 [doi:10.1093/nar/gkv716].",
    "str_id": "9hn7",
    "num_aaChains": 2,
    "aaChains": "A=382,B=324",
    "num_naChains": 1,
    "naChains": "C=76",
    "num_atoms": 6962,
    "num_waters": 0,
    "num_notes": 52,
    "notes": [
      {
        "Aminors": "A-minor interactions (including types I and II)"
      },
      {
        "Cstem_index": "stem index of the 'Canonical' helix in k-turn"
      },
      {
        "Cstem_pair": "Cstem bp delineating the k-turn internal loop"
      },
      {
        "Dp": "perpendicular distance of the 3' P atom to the glycosidic bond"
      },
      {
        "GA_pair": "sheared G-A pair in k-turn"
      },
      {
        "HtypePknot": "H-type pseudoknot"
      },
      {
        "Kturn": "kink-turn (k-turn)"
      },
      {
        "LW": "Leontis-Westhof"
      },
      {
        "NCstem_index": "stem index of the 'Non-Canonical' helix in k-turn"
      },
      {
        "NCstem_pair": "NCstem bp delineating the k-turn internal loop"
      },
      {
        "Uturn": "U-turn of the UNR- or GNRA-type"
      },
      {
        "aa": "amino acid"
      },
      {
        "atom_pair": "symbols of the two atoms involved in an H-bond"
      },
      {
        "auxfiles": "auxiliary files"
      },
      {
        "glyco_bond": "conformation of base related to sugar (syn or anti)"
      },
      {
        "bb_type": "backbone conformation, BI or BII"
      },
      {
        "bending_angle": "angle between two helical axes"
      },
      {
        "bp": "base pair"
      },
      {
        "bseq": "base sequence in one-letter code"
      },
      {
        "bulge": "bulge loop"
      },
      {
        "coaxStacks": "coaxial stacking of stems within a helix"
      },
      {
        "dbn": "dot bracket notation"
      },
      {
        "desc": "description"
      },
      {
        "donAcc_type": "donor/acceptor type of the atom pair in an H-bond"
      },
      {
        "epsilon_zeta": "difference between epsilon and zeta torsion angles"
      },
      {
        "hairpin": "hairpin loop"
      },
      {
        "hbond": "hydrogen bond (H-bond)"
      },
      {
        "helix": "defined by base-stacking interactions, regardless of bp type and backbone connectivity"
      },
      {
        "id": "identifier"
      },
      {
        "iloop": "internal loop"
      },
      {
        "index": "serial number"
      },
      {
        "isoCanonPairs": "isolated canonical pairs"
      },
      {
        "junction": "(multi-branched) junction loop"
      },
      {
        "kissingLoop": "kissing loop"
      },
      {
        "multiplet": "3+ bases in a coplanar geometry"
      },
      {
        "na": "nucleic acid"
      },
      {
        "nonPair": "two nts not forming a pair, but with H-bonding/stacking interactions"
      },
      {
        "nonStack": "nucleotide not involved in stacking interactions"
      },
      {
        "nt": "nucleotide"
      },
      {
        "num": "number"
      },
      {
        "oArea": "overlap areas between two bases, including exocyclic atoms"
      },
      {
        "oArea_ring": "overlap areas between two bases, including only ring atoms"
      },
      {
        "phosContacts": "H-bonding and atom-capping interactions involving a phosphate"
      },
      {
        "residue_pair": "types of the two residues involved in an H-bond"
      },
      {
        "rmsd": "root-mean-squares deviation"
      },
      {
        "serNum": "serial number"
      },
      {
        "ssSegments": "single-stranded segments not involved in loops"
      },
      {
        "ssZp": "Z-coordinate of the 3' phosphorus atom with reference to the 5' base plane"
      },
      {
        "sstr": "secondary structure in dbn"
      },
      {
        "stem": "helix consisting of only canonical pairs, with a continuous backbone"
      },
      {
        "str_id": "structure identifier, derived from inpfile with extension removed"
      },
      {
        "vert_dist": "vertical distance from an atom to a base plane"
      }
    ],
    "num_auxfiles": 18,
    "auxfiles": [
      {
        "index": 1,
        "name": "dssr-pairs.pdb",
        "desc": "an ensemble of base pairs"
      },
      {
        "index": 2,
        "name": "dssr-multiplets.pdb",
        "desc": "an ensemble of multiplets"
      },
      {
        "index": 3,
        "name": "dssr-stems.pdb",
        "desc": "an ensemble of stems"
      },
      {
        "index": 4,
        "name": "dssr-helices.pdb",
        "desc": "an ensemble of helices (coaxial stacking)"
      },
      {
        "index": 5,
        "name": "dssr-hairpins.pdb",
        "desc": "an ensemble of hairpin loops"
      },
      {
        "index": 6,
        "name": "dssr-iloops.pdb",
        "desc": "an ensemble of internal loops"
      },
      {
        "index": 7,
        "name": "dssr-junctions.pdb",
        "desc": "an ensemble of junctions (multi-branch)"
      },
      {
        "index": 8,
        "name": "dssr-2ndstrs.bpseq",
        "desc": "secondary structure in bpseq format"
      },
      {
        "index": 9,
        "name": "dssr-2ndstrs.ct",
        "desc": "secondary structure in connectivity table format"
      },
      {
        "index": 10,
        "name": "dssr-2ndstrs.dbn",
        "desc": "secondary structure in dot-bracket notation"
      },
      {
        "index": 11,
        "name": "dssr-torsions.txt",
        "desc": "backbone torsion angles and suite names"
      },
      {
        "index": 12,
        "name": "dssr-splays.pdb",
        "desc": "an ensemble of splayed-apart units"
      },
      {
        "index": 13,
        "name": "dssr-stacks.pdb",
        "desc": "an ensemble of base stacks"
      },
      {
        "index": 14,
        "name": "dssr-atom2bases.pdb",
        "desc": "an ensemble of atom-base stacking interactions"
      },
      {
        "index": 15,
        "name": "dssr-rotmat.txt",
        "desc": "position vector and rotation matrix"
      },
      {
        "index": 16,
        "name": "dssr-viewV.pdb",
        "desc": "vertical view of the principal moment of inertia"
      },
      {
        "index": 17,
        "name": "dssr-viewH.pdb",
        "desc": "horizontal view of the principal moment of inertia"
      },
      {
        "index": 18,
        "name": "dssr-viewT.pdb",
        "desc": "top view of the principal moment of inertia"
      }
    ],
    "time_used": "999"
  }
}