**************************************************************************** File name: 9ztq.pdb no. of DNA/RNA chains: 3 [K=130,L=23,M=153] no. of nucleotides: 306 no. of atoms: 32430 no. of waters: 0 no. of metals: 0 **************************************************************************** List of 153 base pairs nt1 nt2 bp name Saenger LW DSSR 1 K.DT2 M.DA152 T+A rWC 21-XXI tWW tW+W 2 K.DC3 M.DG151 C-G WC 19-XIX cWW cW-W 3 K.DC4 M.DG150 C-G WC 19-XIX cWW cW-W 4 K.DT5 M.DA149 T-A WC 20-XX cWW cW-W 5 K.DG6 M.DC148 G-C WC 19-XIX cWW cW-W 6 K.DG7 M.DC147 G-C WC 19-XIX cWW cW-W 7 K.DA8 M.DT146 A-T WC 20-XX cWW cW-W 8 K.DG9 M.DC145 G-C WC 19-XIX cWW cW-W 9 K.DA10 M.DT144 A-T WC 20-XX cWW cW-W 10 K.DA11 M.DT143 A-T WC 20-XX cWW cW-W 11 K.DT12 M.DA142 T-A WC 20-XX cWW cW-W 12 K.DC13 M.DG141 C-G WC 19-XIX cWW cW-W 13 K.DC14 M.DG140 C-G WC 19-XIX cWW cW-W 14 K.DC15 M.DG139 C-G WC 19-XIX cWW cW-W 15 K.DG16 M.DC138 G-C WC 19-XIX cWW cW-W 16 K.DG17 M.DC137 G-C WC 19-XIX cWW cW-W 17 K.DT18 M.DA136 T-A WC 20-XX cWW cW-W 18 K.DG19 M.DC135 G-C WC 19-XIX cWW cW-W 19 K.DC20 M.DG134 C-G WC 19-XIX cWW cW-W 20 K.DC21 M.DG133 C-G WC 19-XIX cWW cW-W 21 K.DG22 M.DC132 G-C WC 19-XIX cWW cW-W 22 K.DA23 M.DT131 A-T WC 20-XX cWW cW-W 23 K.DG24 M.DC130 G-C WC 19-XIX cWW cW-W 24 K.DG25 M.DC129 G-C WC 19-XIX cWW cW-W 25 K.DC26 M.DG128 C-G WC 19-XIX cWW cW-W 26 K.DC27 M.DG127 C-G WC 19-XIX cWW cW-W 27 K.DG28 M.DC126 G-C WC 19-XIX cWW cW-W 28 K.DC29 M.DG125 C-G WC 19-XIX cWW cW-W 29 K.DT30 M.DA124 T-A WC 20-XX cWW cW-W 30 K.DC31 M.DG123 C-G WC 19-XIX cWW cW-W 31 K.DA32 M.DT122 A-T WC 20-XX cWW cW-W 32 K.DA33 M.DT121 A-T WC 20-XX cWW cW-W 33 K.DT34 M.DA120 T-A WC 20-XX cWW cW-W 34 K.DT35 M.DA119 T-A WC 20-XX cWW cW-W 35 K.DG36 M.DC118 G-C WC 19-XIX cWW cW-W 36 K.DG37 M.DC117 G-C WC 19-XIX cWW cW-W 37 K.DT38 M.DA116 T-A WC 20-XX cWW cW-W 38 K.DC39 M.DG115 C-G WC 19-XIX cWW cW-W 39 K.DG40 M.DC114 G-C WC 19-XIX cWW cW-W 40 K.DT41 M.DA113 T-A WC 20-XX cWW cW-W 41 K.DA42 M.DT112 A-T WC 20-XX cWW cW-W 42 K.DG43 M.DC111 G-C WC 19-XIX cWW cW-W 43 K.DA44 M.DT110 A-T WC 20-XX cWW cW-W 44 K.DC45 M.DG109 C-G WC 19-XIX cWW cW-W 45 K.DA46 M.DT108 A-T WC 20-XX cWW cW-W 46 K.DG47 M.DC107 G-C WC 19-XIX cWW cW-W 47 K.DC48 M.DG106 C-G WC 19-XIX cWW cW-W 48 K.DT49 M.DA105 T-A WC 20-XX cWW cW-W 49 K.DC50 M.DG104 C-G WC 19-XIX cWW cW-W 50 K.DT51 M.DA103 T-A WC 20-XX cWW cW-W 51 K.DA52 M.DT102 A-T WC 20-XX cWW cW-W 52 K.DG53 M.DC101 G-C WC 19-XIX cWW cW-W 53 K.DC54 M.DG100 C-G WC 19-XIX cWW cW-W 54 K.DA55 M.DT99 A-T WC 20-XX cWW cW-W 55 K.DC56 M.DG98 C-G WC 19-XIX cWW cW-W 56 K.DC57 M.DG97 C-G WC 19-XIX cWW cW-W 57 K.DG58 M.DC96 G-C WC 19-XIX cWW cW-W 58 K.DC59 M.DG95 C-G WC 19-XIX cWW cW-W 59 K.DT60 M.DA94 T-A WC 20-XX cWW cW-W 60 K.DT61 M.DA93 T-A WC 20-XX cWW cW-W 61 K.DA62 M.DT92 A-T WC 20-XX cWW cW-W 62 K.DA63 M.DT91 A-T WC 20-XX cWW cW-W 63 K.DA64 M.DT90 A-T WC 20-XX cWW cW-W 64 K.DC65 M.DG89 C-G WC 19-XIX cWW cW-W 65 K.DG66 M.DC88 G-C WC 19-XIX cWW cW-W 66 K.DC67 M.DG87 C-G WC 19-XIX cWW cW-W 67 K.DA68 M.DT86 A-T WC 20-XX cWW cW-W 68 K.DC69 M.DG85 C-G WC 19-XIX cWW cW-W 69 K.DG70 M.DC84 G-C WC 19-XIX cWW cW-W 70 K.DT71 M.DA83 T-A WC 20-XX cWW cW-W 71 K.DA72 M.DT82 A-T WC 20-XX cWW cW-W 72 K.DC73 M.DG81 C-G WC 19-XIX cWW cW-W 73 K.DG74 M.DC80 G-C WC 19-XIX cWW cW-W 74 K.DC75 M.DG79 C-G WC 19-XIX cWW cW-W 75 K.DG76 M.DC78 G-C WC 19-XIX cWW cW-W 76 K.DC77 M.DG77 C-G WC 19-XIX cWW cW-W 77 K.DT78 M.DA76 T-A WC 20-XX cWW cW-W 78 K.DG79 M.DC75 G-C WC 19-XIX cWW cW-W 79 K.DT80 M.DA74 T-A WC 20-XX cWW cW-W 80 K.DC81 M.DG73 C-G WC 19-XIX cWW cW-W 81 K.DC82 M.DG72 C-G WC 19-XIX cWW cW-W 82 K.DC83 M.DG71 C-G WC 19-XIX cWW cW-W 83 K.DC84 M.DG70 C-G WC 19-XIX cWW cW-W 84 K.DC85 M.DG69 C-G WC 19-XIX cWW cW-W 85 K.DG86 M.DC68 G-C WC 19-XIX cWW cW-W 86 K.DC87 M.DG67 C-G WC 19-XIX cWW cW-W 87 K.DG88 M.DC66 G-C WC 19-XIX cWW cW-W 88 K.DT89 M.DA65 T-A WC 20-XX cWW cW-W 89 K.DT90 M.DA64 T-A WC 20-XX cWW cW-W 90 K.DT91 M.DA63 T-A WC 20-XX cWW cW-W 91 K.DT92 M.DA62 T-A WC 20-XX cWW cW-W 92 K.DA93 M.DT61 A-T WC 20-XX cWW cW-W 93 K.DA94 M.DT60 A-T WC 20-XX cWW cW-W 94 K.DC95 M.DG59 C-G WC 19-XIX cWW cW-W 95 K.DC96 M.DG58 C-G WC 19-XIX cWW cW-W 96 K.DG97 M.DC57 G-C WC 19-XIX cWW cW-W 97 K.DC98 M.DG56 C-G WC 19-XIX cWW cW-W 98 K.DC99 M.DG55 C-G WC 19-XIX cWW cW-W 99 K.DA100 M.DT54 A-T WC 20-XX cWW cW-W 100 K.DA101 M.DT53 A-T WC 20-XX cWW cW-W 101 K.DG102 M.DC52 G-C WC 19-XIX cWW cW-W 102 K.DG103 M.DC51 G-C WC 19-XIX cWW cW-W 103 K.DG104 M.DC50 G-C WC 19-XIX cWW cW-W 104 K.DG105 M.DC49 G-C WC 19-XIX cWW cW-W 105 K.DA106 M.DT48 A-T WC 20-XX cWW cW-W 106 K.DT107 M.DA47 T-A WC 20-XX cWW cW-W 107 K.DT108 M.DA46 T-A WC 20-XX cWW cW-W 108 K.DA109 M.DT45 A-T WC 20-XX cWW cW-W 109 K.DC110 M.DG44 C-G WC 19-XIX cWW cW-W 110 K.DT111 M.DA43 T-A WC 20-XX cWW cW-W 111 K.DC112 M.DG42 C-G WC 19-XIX cWW cW-W 112 K.DC113 M.DG41 C-G WC 19-XIX cWW cW-W 113 K.DC114 M.DG40 C-G WC 19-XIX cWW cW-W 114 K.DT115 M.DA39 T-A WC 20-XX cWW cW-W 115 K.DA116 M.DT38 A-T WC 20-XX cWW cW-W 116 K.DC117 M.DG37 C-G WC 19-XIX cWW cW-W 117 K.DT118 M.DA36 T-A WC 20-XX cWW cW-W 118 K.DG119 M.DC35 G-C WC 19-XIX cWW cW-W 119 K.DA120 M.DT34 A-T WC 20-XX cWW cW-W 120 K.DC121 M.DG33 C-G WC 19-XIX cWW cW-W 121 K.DC122 M.DG32 C-G WC 19-XIX cWW cW-W 122 K.DA123 M.DT31 A-T WC 20-XX cWW cW-W 123 K.DG124 M.DC30 G-C WC 19-XIX cWW cW-W 124 K.DG125 M.DC29 G-C WC 19-XIX cWW cW-W 125 K.DT126 M.DA28 T-A WC 20-XX cWW cW-W 126 K.DC127 M.DG27 C-G WC 19-XIX cWW cW-W 127 K.DT128 M.DA26 T-A WC 20-XX cWW cW-W 128 K.DC129 M.DG25 C-G WC 19-XIX cWW cW-W 129 K.DC130 M.DG24 C-G WC 19-XIX cWW cW-W 130 L.DG1 M.DC23 G-C WC 19-XIX cWW cW-W 131 L.DT2 M.DA22 T-A WC 20-XX cWW cW-W 132 L.DC3 M.DG21 C-G WC 19-XIX cWW cW-W 133 L.DA4 M.DT20 A-T WC 20-XX cWW cW-W 134 L.DG5 M.DC19 G-C WC 19-XIX cWW cW-W 135 L.DG5 M.DT20 G-T -- -- cWW cW-W 136 L.DA6 M.DT18 A-T WC 20-XX cWW cW-W 137 L.DT7 M.DA17 T-A WC 20-XX cWW cW-W 138 L.DA8 M.DT16 A-T WC 20-XX cWW cW-W 139 L.DT9 M.DA15 T-A WC 20-XX cWW cW-W 140 L.DA10 M.DT14 A-T WC 20-XX cWW cW-W 141 L.DT11 M.DA13 T-A WC 20-XX cWW cW-W 142 L.DA12 M.DT12 A-T WC 20-XX cWW cW-W 143 L.DC13 M.DG11 C-G WC 19-XIX cWW cW-W 144 L.DA14 M.DT10 A-T WC 20-XX cWW cW-W 145 L.DT15 M.DA9 T-A WC 20-XX cWW cW-W 146 L.DC16 M.DG8 C-G WC 19-XIX cWW cW-W 147 L.DC17 M.DG7 C-G WC 19-XIX cWW cW-W 148 L.DT18 M.DA6 T-A WC 20-XX cWW cW-W 149 L.DG19 M.DC5 G-C WC 19-XIX cWW cW-W 150 L.DT20 M.DA4 T-A WC 20-XX cWW cW-W 151 L.DG21 M.DC3 G-C WC 19-XIX cWW cW-W 152 L.DA22 M.DT2 A-T WC 20-XX cWW cW-W 153 L.DT23 M.DA1 T-A WC 20-XX cWW cW-W **************************************************************************** List of 1 helix Note: A helix is defined by base-stacking interactions, regardless of pair type and backbone connectivity, and may contain more than one stem. helix#number[stems-contained] bps=number-of-base-pairs in the helix bp-type: '|' for a canonical WC/wobble pair, '.' otherwise helix-form: classification of a dinucleotide step comprising the bp above the given designation and the bp that follows it. Types include 'A', 'B' or 'Z' for the common A-, B- and Z-form helices, '.' for an unclassified step, and 'x' for a step without a continuous backbone. -------------------------------------------------------------------- helix#1[2] bps=152 strand-1 5'-TCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTACTGACCAGGTCTCCGTCAGATATATACATCCTGTGAT-3' bp-type .||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| strand-2 3'-AGGACCTCTTAGGGCCACGGCTCCGGCGAGTTAACCAGCATCTGTCGAGATCGTGGCGAATTTGCGTGCATGCGCGACAGGGGGCGCAAAATTGGCGGTTCCCCTAATGAGGGATGACTGGTCCAGAGGCAGTCTATATATGTAGGACACTA-5' helix-form .BBB.BBBB.BBBBBBBBBB.BBBBBBB.BBBBBBBBBB.B..BBBB.B.BBB..BBBBBBBBBBBBBB.BBBBBBBBBBBBBBBBBBBB..BBB..BBBBBBBBBBBBB.BBBBBBBBBB.B.B.BBx.B...BB..BBBBBBBBBBB.. 1 K.DT2 M.DA152 T+A rWC 21-XXI tWW tW+W 2 K.DC3 M.DG151 C-G WC 19-XIX cWW cW-W 3 K.DC4 M.DG150 C-G WC 19-XIX cWW cW-W 4 K.DT5 M.DA149 T-A WC 20-XX cWW cW-W 5 K.DG6 M.DC148 G-C WC 19-XIX cWW cW-W 6 K.DG7 M.DC147 G-C WC 19-XIX cWW cW-W 7 K.DA8 M.DT146 A-T WC 20-XX cWW cW-W 8 K.DG9 M.DC145 G-C WC 19-XIX cWW cW-W 9 K.DA10 M.DT144 A-T WC 20-XX cWW cW-W 10 K.DA11 M.DT143 A-T WC 20-XX cWW cW-W 11 K.DT12 M.DA142 T-A WC 20-XX cWW cW-W 12 K.DC13 M.DG141 C-G WC 19-XIX cWW cW-W 13 K.DC14 M.DG140 C-G WC 19-XIX cWW cW-W 14 K.DC15 M.DG139 C-G WC 19-XIX cWW cW-W 15 K.DG16 M.DC138 G-C WC 19-XIX cWW cW-W 16 K.DG17 M.DC137 G-C WC 19-XIX cWW cW-W 17 K.DT18 M.DA136 T-A WC 20-XX cWW cW-W 18 K.DG19 M.DC135 G-C WC 19-XIX cWW cW-W 19 K.DC20 M.DG134 C-G WC 19-XIX cWW cW-W 20 K.DC21 M.DG133 C-G WC 19-XIX cWW cW-W 21 K.DG22 M.DC132 G-C WC 19-XIX cWW cW-W 22 K.DA23 M.DT131 A-T WC 20-XX cWW cW-W 23 K.DG24 M.DC130 G-C WC 19-XIX cWW cW-W 24 K.DG25 M.DC129 G-C WC 19-XIX cWW cW-W 25 K.DC26 M.DG128 C-G WC 19-XIX cWW cW-W 26 K.DC27 M.DG127 C-G WC 19-XIX cWW cW-W 27 K.DG28 M.DC126 G-C WC 19-XIX cWW cW-W 28 K.DC29 M.DG125 C-G WC 19-XIX cWW cW-W 29 K.DT30 M.DA124 T-A WC 20-XX cWW cW-W 30 K.DC31 M.DG123 C-G WC 19-XIX cWW cW-W 31 K.DA32 M.DT122 A-T WC 20-XX cWW cW-W 32 K.DA33 M.DT121 A-T WC 20-XX cWW cW-W 33 K.DT34 M.DA120 T-A WC 20-XX cWW cW-W 34 K.DT35 M.DA119 T-A WC 20-XX cWW cW-W 35 K.DG36 M.DC118 G-C WC 19-XIX cWW cW-W 36 K.DG37 M.DC117 G-C WC 19-XIX cWW cW-W 37 K.DT38 M.DA116 T-A WC 20-XX cWW cW-W 38 K.DC39 M.DG115 C-G WC 19-XIX cWW cW-W 39 K.DG40 M.DC114 G-C WC 19-XIX cWW cW-W 40 K.DT41 M.DA113 T-A WC 20-XX cWW cW-W 41 K.DA42 M.DT112 A-T WC 20-XX cWW cW-W 42 K.DG43 M.DC111 G-C WC 19-XIX cWW cW-W 43 K.DA44 M.DT110 A-T WC 20-XX cWW cW-W 44 K.DC45 M.DG109 C-G WC 19-XIX cWW cW-W 45 K.DA46 M.DT108 A-T WC 20-XX cWW cW-W 46 K.DG47 M.DC107 G-C WC 19-XIX cWW cW-W 47 K.DC48 M.DG106 C-G WC 19-XIX cWW cW-W 48 K.DT49 M.DA105 T-A WC 20-XX cWW cW-W 49 K.DC50 M.DG104 C-G WC 19-XIX cWW cW-W 50 K.DT51 M.DA103 T-A WC 20-XX cWW cW-W 51 K.DA52 M.DT102 A-T WC 20-XX cWW cW-W 52 K.DG53 M.DC101 G-C WC 19-XIX cWW cW-W 53 K.DC54 M.DG100 C-G WC 19-XIX cWW cW-W 54 K.DA55 M.DT99 A-T WC 20-XX cWW cW-W 55 K.DC56 M.DG98 C-G WC 19-XIX cWW cW-W 56 K.DC57 M.DG97 C-G WC 19-XIX cWW cW-W 57 K.DG58 M.DC96 G-C WC 19-XIX cWW cW-W 58 K.DC59 M.DG95 C-G WC 19-XIX cWW cW-W 59 K.DT60 M.DA94 T-A WC 20-XX cWW cW-W 60 K.DT61 M.DA93 T-A WC 20-XX cWW cW-W 61 K.DA62 M.DT92 A-T WC 20-XX cWW cW-W 62 K.DA63 M.DT91 A-T WC 20-XX cWW cW-W 63 K.DA64 M.DT90 A-T WC 20-XX cWW cW-W 64 K.DC65 M.DG89 C-G WC 19-XIX cWW cW-W 65 K.DG66 M.DC88 G-C WC 19-XIX cWW cW-W 66 K.DC67 M.DG87 C-G WC 19-XIX cWW cW-W 67 K.DA68 M.DT86 A-T WC 20-XX cWW cW-W 68 K.DC69 M.DG85 C-G WC 19-XIX cWW cW-W 69 K.DG70 M.DC84 G-C WC 19-XIX cWW cW-W 70 K.DT71 M.DA83 T-A WC 20-XX cWW cW-W 71 K.DA72 M.DT82 A-T WC 20-XX cWW cW-W 72 K.DC73 M.DG81 C-G WC 19-XIX cWW cW-W 73 K.DG74 M.DC80 G-C WC 19-XIX cWW cW-W 74 K.DC75 M.DG79 C-G WC 19-XIX cWW cW-W 75 K.DG76 M.DC78 G-C WC 19-XIX cWW cW-W 76 K.DC77 M.DG77 C-G WC 19-XIX cWW cW-W 77 K.DT78 M.DA76 T-A WC 20-XX cWW cW-W 78 K.DG79 M.DC75 G-C WC 19-XIX cWW cW-W 79 K.DT80 M.DA74 T-A WC 20-XX cWW cW-W 80 K.DC81 M.DG73 C-G WC 19-XIX cWW cW-W 81 K.DC82 M.DG72 C-G WC 19-XIX cWW cW-W 82 K.DC83 M.DG71 C-G WC 19-XIX cWW cW-W 83 K.DC84 M.DG70 C-G WC 19-XIX cWW cW-W 84 K.DC85 M.DG69 C-G WC 19-XIX cWW cW-W 85 K.DG86 M.DC68 G-C WC 19-XIX cWW cW-W 86 K.DC87 M.DG67 C-G WC 19-XIX cWW cW-W 87 K.DG88 M.DC66 G-C WC 19-XIX cWW cW-W 88 K.DT89 M.DA65 T-A WC 20-XX cWW cW-W 89 K.DT90 M.DA64 T-A WC 20-XX cWW cW-W 90 K.DT91 M.DA63 T-A WC 20-XX cWW cW-W 91 K.DT92 M.DA62 T-A WC 20-XX cWW cW-W 92 K.DA93 M.DT61 A-T WC 20-XX cWW cW-W 93 K.DA94 M.DT60 A-T WC 20-XX cWW cW-W 94 K.DC95 M.DG59 C-G WC 19-XIX cWW cW-W 95 K.DC96 M.DG58 C-G WC 19-XIX cWW cW-W 96 K.DG97 M.DC57 G-C WC 19-XIX cWW cW-W 97 K.DC98 M.DG56 C-G WC 19-XIX cWW cW-W 98 K.DC99 M.DG55 C-G WC 19-XIX cWW cW-W 99 K.DA100 M.DT54 A-T WC 20-XX cWW cW-W 100 K.DA101 M.DT53 A-T WC 20-XX cWW cW-W 101 K.DG102 M.DC52 G-C WC 19-XIX cWW cW-W 102 K.DG103 M.DC51 G-C WC 19-XIX cWW cW-W 103 K.DG104 M.DC50 G-C WC 19-XIX cWW cW-W 104 K.DG105 M.DC49 G-C WC 19-XIX cWW cW-W 105 K.DA106 M.DT48 A-T WC 20-XX cWW cW-W 106 K.DT107 M.DA47 T-A WC 20-XX cWW cW-W 107 K.DT108 M.DA46 T-A WC 20-XX cWW cW-W 108 K.DA109 M.DT45 A-T WC 20-XX cWW cW-W 109 K.DC110 M.DG44 C-G WC 19-XIX cWW cW-W 110 K.DT111 M.DA43 T-A WC 20-XX cWW cW-W 111 K.DC112 M.DG42 C-G WC 19-XIX cWW cW-W 112 K.DC113 M.DG41 C-G WC 19-XIX cWW cW-W 113 K.DC114 M.DG40 C-G WC 19-XIX cWW cW-W 114 K.DT115 M.DA39 T-A WC 20-XX cWW cW-W 115 K.DA116 M.DT38 A-T WC 20-XX cWW cW-W 116 K.DC117 M.DG37 C-G WC 19-XIX cWW cW-W 117 K.DT118 M.DA36 T-A WC 20-XX cWW cW-W 118 K.DG119 M.DC35 G-C WC 19-XIX cWW cW-W 119 K.DA120 M.DT34 A-T WC 20-XX cWW cW-W 120 K.DC121 M.DG33 C-G WC 19-XIX cWW cW-W 121 K.DC122 M.DG32 C-G WC 19-XIX cWW cW-W 122 K.DA123 M.DT31 A-T WC 20-XX cWW cW-W 123 K.DG124 M.DC30 G-C WC 19-XIX cWW cW-W 124 K.DG125 M.DC29 G-C WC 19-XIX cWW cW-W 125 K.DT126 M.DA28 T-A WC 20-XX cWW cW-W 126 K.DC127 M.DG27 C-G WC 19-XIX cWW cW-W 127 K.DT128 M.DA26 T-A WC 20-XX cWW cW-W 128 K.DC129 M.DG25 C-G WC 19-XIX cWW cW-W 129 K.DC130 M.DG24 C-G WC 19-XIX cWW cW-W 130 L.DG1 M.DC23 G-C WC 19-XIX cWW cW-W 131 L.DT2 M.DA22 T-A WC 20-XX cWW cW-W 132 L.DC3 M.DG21 C-G WC 19-XIX cWW cW-W 133 L.DA4 M.DT20 A-T WC 20-XX cWW cW-W 134 L.DG5 M.DC19 G-C WC 19-XIX cWW cW-W 135 L.DA6 M.DT18 A-T WC 20-XX cWW cW-W 136 L.DT7 M.DA17 T-A WC 20-XX cWW cW-W 137 L.DA8 M.DT16 A-T WC 20-XX cWW cW-W 138 L.DT9 M.DA15 T-A WC 20-XX cWW cW-W 139 L.DA10 M.DT14 A-T WC 20-XX cWW cW-W 140 L.DT11 M.DA13 T-A WC 20-XX cWW cW-W 141 L.DA12 M.DT12 A-T WC 20-XX cWW cW-W 142 L.DC13 M.DG11 C-G WC 19-XIX cWW cW-W 143 L.DA14 M.DT10 A-T WC 20-XX cWW cW-W 144 L.DT15 M.DA9 T-A WC 20-XX cWW cW-W 145 L.DC16 M.DG8 C-G WC 19-XIX cWW cW-W 146 L.DC17 M.DG7 C-G WC 19-XIX cWW cW-W 147 L.DT18 M.DA6 T-A WC 20-XX cWW cW-W 148 L.DG19 M.DC5 G-C WC 19-XIX cWW cW-W 149 L.DT20 M.DA4 T-A WC 20-XX cWW cW-W 150 L.DG21 M.DC3 G-C WC 19-XIX cWW cW-W 151 L.DA22 M.DT2 A-T WC 20-XX cWW cW-W 152 L.DT23 M.DA1 T-A WC 20-XX cWW cW-W **************************************************************************** List of 2 stems Note: A stem is defined as a helix consisting strictly of canonical WC/wobble pairs with a continuous backbone. stem#number[#helix-number containing this stem] Other terms are defined as in the above Helix section. -------------------------------------------------------------------- stem#1[#1] bps=128 strand-1 5'-CCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTACTGACCAGGTCTCC-3' bp-type |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| strand-2 3'-GGACCTCTTAGGGCCACGGCTCCGGCGAGTTAACCAGCATCTGTCGAGATCGTGGCGAATTTGCGTGCATGCGCGACAGGGGGCGCAAAATTGGCGGTTCCCCTAATGAGGGATGACTGGTCCAGAGG-5' helix-form BBB.BBBB.BBBBBBBBBB.BBBBBBB.BBBBBBBBBB.B..BBBB.B.BBB..BBBBBBBBBBBBBB.BBBBBBBBBBBBBBBBBBBB..BBB..BBBBBBBBBBBBB.BBBBBBBBBB.B.B.BB 1 K.DC3 M.DG151 C-G WC 19-XIX cWW cW-W 2 K.DC4 M.DG150 C-G WC 19-XIX cWW cW-W 3 K.DT5 M.DA149 T-A WC 20-XX cWW cW-W 4 K.DG6 M.DC148 G-C WC 19-XIX cWW cW-W 5 K.DG7 M.DC147 G-C WC 19-XIX cWW cW-W 6 K.DA8 M.DT146 A-T WC 20-XX cWW cW-W 7 K.DG9 M.DC145 G-C WC 19-XIX cWW cW-W 8 K.DA10 M.DT144 A-T WC 20-XX cWW cW-W 9 K.DA11 M.DT143 A-T WC 20-XX cWW cW-W 10 K.DT12 M.DA142 T-A WC 20-XX cWW cW-W 11 K.DC13 M.DG141 C-G WC 19-XIX cWW cW-W 12 K.DC14 M.DG140 C-G WC 19-XIX cWW cW-W 13 K.DC15 M.DG139 C-G WC 19-XIX cWW cW-W 14 K.DG16 M.DC138 G-C WC 19-XIX cWW cW-W 15 K.DG17 M.DC137 G-C WC 19-XIX cWW cW-W 16 K.DT18 M.DA136 T-A WC 20-XX cWW cW-W 17 K.DG19 M.DC135 G-C WC 19-XIX cWW cW-W 18 K.DC20 M.DG134 C-G WC 19-XIX cWW cW-W 19 K.DC21 M.DG133 C-G WC 19-XIX cWW cW-W 20 K.DG22 M.DC132 G-C WC 19-XIX cWW cW-W 21 K.DA23 M.DT131 A-T WC 20-XX cWW cW-W 22 K.DG24 M.DC130 G-C WC 19-XIX cWW cW-W 23 K.DG25 M.DC129 G-C WC 19-XIX cWW cW-W 24 K.DC26 M.DG128 C-G WC 19-XIX cWW cW-W 25 K.DC27 M.DG127 C-G WC 19-XIX cWW cW-W 26 K.DG28 M.DC126 G-C WC 19-XIX cWW cW-W 27 K.DC29 M.DG125 C-G WC 19-XIX cWW cW-W 28 K.DT30 M.DA124 T-A WC 20-XX cWW cW-W 29 K.DC31 M.DG123 C-G WC 19-XIX cWW cW-W 30 K.DA32 M.DT122 A-T WC 20-XX cWW cW-W 31 K.DA33 M.DT121 A-T WC 20-XX cWW cW-W 32 K.DT34 M.DA120 T-A WC 20-XX cWW cW-W 33 K.DT35 M.DA119 T-A WC 20-XX cWW cW-W 34 K.DG36 M.DC118 G-C WC 19-XIX cWW cW-W 35 K.DG37 M.DC117 G-C WC 19-XIX cWW cW-W 36 K.DT38 M.DA116 T-A WC 20-XX cWW cW-W 37 K.DC39 M.DG115 C-G WC 19-XIX cWW cW-W 38 K.DG40 M.DC114 G-C WC 19-XIX cWW cW-W 39 K.DT41 M.DA113 T-A WC 20-XX cWW cW-W 40 K.DA42 M.DT112 A-T WC 20-XX cWW cW-W 41 K.DG43 M.DC111 G-C WC 19-XIX cWW cW-W 42 K.DA44 M.DT110 A-T WC 20-XX cWW cW-W 43 K.DC45 M.DG109 C-G WC 19-XIX cWW cW-W 44 K.DA46 M.DT108 A-T WC 20-XX cWW cW-W 45 K.DG47 M.DC107 G-C WC 19-XIX cWW cW-W 46 K.DC48 M.DG106 C-G WC 19-XIX cWW cW-W 47 K.DT49 M.DA105 T-A WC 20-XX cWW cW-W 48 K.DC50 M.DG104 C-G WC 19-XIX cWW cW-W 49 K.DT51 M.DA103 T-A WC 20-XX cWW cW-W 50 K.DA52 M.DT102 A-T WC 20-XX cWW cW-W 51 K.DG53 M.DC101 G-C WC 19-XIX cWW cW-W 52 K.DC54 M.DG100 C-G WC 19-XIX cWW cW-W 53 K.DA55 M.DT99 A-T WC 20-XX cWW cW-W 54 K.DC56 M.DG98 C-G WC 19-XIX cWW cW-W 55 K.DC57 M.DG97 C-G WC 19-XIX cWW cW-W 56 K.DG58 M.DC96 G-C WC 19-XIX cWW cW-W 57 K.DC59 M.DG95 C-G WC 19-XIX cWW cW-W 58 K.DT60 M.DA94 T-A WC 20-XX cWW cW-W 59 K.DT61 M.DA93 T-A WC 20-XX cWW cW-W 60 K.DA62 M.DT92 A-T WC 20-XX cWW cW-W 61 K.DA63 M.DT91 A-T WC 20-XX cWW cW-W 62 K.DA64 M.DT90 A-T WC 20-XX cWW cW-W 63 K.DC65 M.DG89 C-G WC 19-XIX cWW cW-W 64 K.DG66 M.DC88 G-C WC 19-XIX cWW cW-W 65 K.DC67 M.DG87 C-G WC 19-XIX cWW cW-W 66 K.DA68 M.DT86 A-T WC 20-XX cWW cW-W 67 K.DC69 M.DG85 C-G WC 19-XIX cWW cW-W 68 K.DG70 M.DC84 G-C WC 19-XIX cWW cW-W 69 K.DT71 M.DA83 T-A WC 20-XX cWW cW-W 70 K.DA72 M.DT82 A-T WC 20-XX cWW cW-W 71 K.DC73 M.DG81 C-G WC 19-XIX cWW cW-W 72 K.DG74 M.DC80 G-C WC 19-XIX cWW cW-W 73 K.DC75 M.DG79 C-G WC 19-XIX cWW cW-W 74 K.DG76 M.DC78 G-C WC 19-XIX cWW cW-W 75 K.DC77 M.DG77 C-G WC 19-XIX cWW cW-W 76 K.DT78 M.DA76 T-A WC 20-XX cWW cW-W 77 K.DG79 M.DC75 G-C WC 19-XIX cWW cW-W 78 K.DT80 M.DA74 T-A WC 20-XX cWW cW-W 79 K.DC81 M.DG73 C-G WC 19-XIX cWW cW-W 80 K.DC82 M.DG72 C-G WC 19-XIX cWW cW-W 81 K.DC83 M.DG71 C-G WC 19-XIX cWW cW-W 82 K.DC84 M.DG70 C-G WC 19-XIX cWW cW-W 83 K.DC85 M.DG69 C-G WC 19-XIX cWW cW-W 84 K.DG86 M.DC68 G-C WC 19-XIX cWW cW-W 85 K.DC87 M.DG67 C-G WC 19-XIX cWW cW-W 86 K.DG88 M.DC66 G-C WC 19-XIX cWW cW-W 87 K.DT89 M.DA65 T-A WC 20-XX cWW cW-W 88 K.DT90 M.DA64 T-A WC 20-XX cWW cW-W 89 K.DT91 M.DA63 T-A WC 20-XX cWW cW-W 90 K.DT92 M.DA62 T-A WC 20-XX cWW cW-W 91 K.DA93 M.DT61 A-T WC 20-XX cWW cW-W 92 K.DA94 M.DT60 A-T WC 20-XX cWW cW-W 93 K.DC95 M.DG59 C-G WC 19-XIX cWW cW-W 94 K.DC96 M.DG58 C-G WC 19-XIX cWW cW-W 95 K.DG97 M.DC57 G-C WC 19-XIX cWW cW-W 96 K.DC98 M.DG56 C-G WC 19-XIX cWW cW-W 97 K.DC99 M.DG55 C-G WC 19-XIX cWW cW-W 98 K.DA100 M.DT54 A-T WC 20-XX cWW cW-W 99 K.DA101 M.DT53 A-T WC 20-XX cWW cW-W 100 K.DG102 M.DC52 G-C WC 19-XIX cWW cW-W 101 K.DG103 M.DC51 G-C WC 19-XIX cWW cW-W 102 K.DG104 M.DC50 G-C WC 19-XIX cWW cW-W 103 K.DG105 M.DC49 G-C WC 19-XIX cWW cW-W 104 K.DA106 M.DT48 A-T WC 20-XX cWW cW-W 105 K.DT107 M.DA47 T-A WC 20-XX cWW cW-W 106 K.DT108 M.DA46 T-A WC 20-XX cWW cW-W 107 K.DA109 M.DT45 A-T WC 20-XX cWW cW-W 108 K.DC110 M.DG44 C-G WC 19-XIX cWW cW-W 109 K.DT111 M.DA43 T-A WC 20-XX cWW cW-W 110 K.DC112 M.DG42 C-G WC 19-XIX cWW cW-W 111 K.DC113 M.DG41 C-G WC 19-XIX cWW cW-W 112 K.DC114 M.DG40 C-G WC 19-XIX cWW cW-W 113 K.DT115 M.DA39 T-A WC 20-XX cWW cW-W 114 K.DA116 M.DT38 A-T WC 20-XX cWW cW-W 115 K.DC117 M.DG37 C-G WC 19-XIX cWW cW-W 116 K.DT118 M.DA36 T-A WC 20-XX cWW cW-W 117 K.DG119 M.DC35 G-C WC 19-XIX cWW cW-W 118 K.DA120 M.DT34 A-T WC 20-XX cWW cW-W 119 K.DC121 M.DG33 C-G WC 19-XIX cWW cW-W 120 K.DC122 M.DG32 C-G WC 19-XIX cWW cW-W 121 K.DA123 M.DT31 A-T WC 20-XX cWW cW-W 122 K.DG124 M.DC30 G-C WC 19-XIX cWW cW-W 123 K.DG125 M.DC29 G-C WC 19-XIX cWW cW-W 124 K.DT126 M.DA28 T-A WC 20-XX cWW cW-W 125 K.DC127 M.DG27 C-G WC 19-XIX cWW cW-W 126 K.DT128 M.DA26 T-A WC 20-XX cWW cW-W 127 K.DC129 M.DG25 C-G WC 19-XIX cWW cW-W 128 K.DC130 M.DG24 C-G WC 19-XIX cWW cW-W -------------------------------------------------------------------------- stem#2[#1] bps=23 strand-1 5'-GTCAGATATATACATCCTGTGAT-3' bp-type ||||||||||||||||||||||| strand-2 3'-CAGTCTATATATGTAGGACACTA-5' helix-form .B...BB..BBBBBBBBBBB.. 1 L.DG1 M.DC23 G-C WC 19-XIX cWW cW-W 2 L.DT2 M.DA22 T-A WC 20-XX cWW cW-W 3 L.DC3 M.DG21 C-G WC 19-XIX cWW cW-W 4 L.DA4 M.DT20 A-T WC 20-XX cWW cW-W 5 L.DG5 M.DC19 G-C WC 19-XIX cWW cW-W 6 L.DA6 M.DT18 A-T WC 20-XX cWW cW-W 7 L.DT7 M.DA17 T-A WC 20-XX cWW cW-W 8 L.DA8 M.DT16 A-T WC 20-XX cWW cW-W 9 L.DT9 M.DA15 T-A WC 20-XX cWW cW-W 10 L.DA10 M.DT14 A-T WC 20-XX cWW cW-W 11 L.DT11 M.DA13 T-A WC 20-XX cWW cW-W 12 L.DA12 M.DT12 A-T WC 20-XX cWW cW-W 13 L.DC13 M.DG11 C-G WC 19-XIX cWW cW-W 14 L.DA14 M.DT10 A-T WC 20-XX cWW cW-W 15 L.DT15 M.DA9 T-A WC 20-XX cWW cW-W 16 L.DC16 M.DG8 C-G WC 19-XIX cWW cW-W 17 L.DC17 M.DG7 C-G WC 19-XIX cWW cW-W 18 L.DT18 M.DA6 T-A WC 20-XX cWW cW-W 19 L.DG19 M.DC5 G-C WC 19-XIX cWW cW-W 20 L.DT20 M.DA4 T-A WC 20-XX cWW cW-W 21 L.DG21 M.DC3 G-C WC 19-XIX cWW cW-W 22 L.DA22 M.DT2 A-T WC 20-XX cWW cW-W 23 L.DT23 M.DA1 T-A WC 20-XX cWW cW-W **************************************************************************** List of 1 coaxial stack 1 Helix#1 contains 2 stems: [#1,#2] **************************************************************************** List of 4 base stacks Note: A stack is an ordered list of nucleotides assembled together via base-stacking interactions, regardless of backbone connectivity. Stacking interactions within a stem are *not* included. 1 nts=2 TC K.DT2,K.DC3 2 nts=2 CG K.DC130,L.DG1 3 nts=2 CG M.DC23,M.DG24 4 nts=3 AAG K.DA1,M.DA152,M.DG151 **************************************************************************** Nucleotides not involved in stacking interactions nts=1 T M.DT153 **************************************************************************** List of 2 non-loop single-stranded segments 1 nts=2 AT K.DA1,K.DT2 2 nts=2 AT M.DA152,M.DT153 **************************************************************************** Secondary structures in dot-bracket notation (dbn) as a whole and per chain >9ztq nts=306 [whole] ATCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTACTGACCAGGTCTCC>CAGATATATACATCCTGTGAT&ATCACAGGATGTATATATCTGACGGAGACCTGGTCAGTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAGGAT ..((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((&(((((((((((((((((((((((&))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).. >9ztq-K #1 nts=130 0.22(2.35) [chain] DNA ATCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTACTGACCAGGTCTCC ..(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((( >9ztq-L #2 nts=23 3.29(0.63) [chain] DNA GTCAGATATATACATCCTGTGAT ((((((((((((((((((((((( >9ztq-M #3 nts=153 0.29(2.43) [chain] DNA ATCACAGGATGTATATATCTGACGGAGACCTGGTCAGTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAGGAT ))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).. **************************************************************************** Summary of structural features of 306 nucleotides Note: the first five columns are: (1) serial number, (2) one-letter shorthand name, (3) dbn, (4) id string, (5) rmsd (~zero) of base ring atoms fitted against those in a standard base reference frame. The sixth (last) column contains a comma-separated list of features whose meanings are mostly self-explanatory, except for: turn: angle C1'(i-1)--C1'(i)--C1'(i+1) < 90 degrees break: no backbone linkage between O3'(i-1) and P(i) 1 A . K.DA1 0.003 ~C2'-endo,BII,non-pair-contact,ss-non-loop 2 T . K.DT2 0.004 anti,~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop 3 C ( K.DC3 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 4 C ( K.DC4 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 5 T ( K.DT5 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 6 G ( K.DG6 0.007 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 7 G ( K.DG7 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 8 A ( K.DA8 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 9 G ( K.DG9 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 10 A ( K.DA10 0.007 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 11 A ( K.DA11 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 12 T ( K.DT12 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 13 C ( K.DC13 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 14 C ( K.DC14 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 15 C ( K.DC15 0.004 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 16 G ( K.DG16 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 17 G ( K.DG17 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 18 T ( K.DT18 0.002 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 19 G ( K.DG19 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 20 C ( K.DC20 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 21 C ( K.DC21 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 22 G ( K.DG22 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 23 A ( K.DA23 0.007 ~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 24 G ( K.DG24 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 25 G ( K.DG25 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 26 C ( K.DC26 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 27 C ( K.DC27 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 28 G ( K.DG28 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 29 C ( K.DC29 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 30 T ( K.DT30 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 31 C ( K.DC31 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 32 A ( K.DA32 0.007 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 33 A ( K.DA33 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 34 T ( K.DT34 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 35 T ( K.DT35 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 36 G ( K.DG36 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 37 G ( K.DG37 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 38 T ( K.DT38 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 39 C ( K.DC39 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 40 G ( K.DG40 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 41 T ( K.DT41 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 42 A ( K.DA42 0.009 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 43 G ( K.DG43 0.007 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 44 A ( K.DA44 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 45 C ( K.DC45 0.005 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 46 A ( K.DA46 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 47 G ( K.DG47 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 48 C ( K.DC48 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 49 T ( K.DT49 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 50 C ( K.DC50 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 51 T ( K.DT51 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 52 A ( K.DA52 0.007 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 53 G ( K.DG53 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 54 C ( K.DC54 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 55 A ( K.DA55 0.007 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 56 C ( K.DC56 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 57 C ( K.DC57 0.005 anti,canonical,non-pair-contact,helix,stem,coaxial-stack 58 G ( K.DG58 0.008 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 59 C ( K.DC59 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 60 T ( K.DT60 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 61 T ( K.DT61 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 62 A ( K.DA62 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 63 A ( K.DA63 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 64 A ( K.DA64 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 65 C ( K.DC65 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 66 G ( K.DG66 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 67 C ( K.DC67 0.005 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 68 A ( K.DA68 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 69 C ( K.DC69 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 70 G ( K.DG70 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 71 T ( K.DT71 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 72 A ( K.DA72 0.006 ~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 73 C ( K.DC73 0.006 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 74 G ( K.DG74 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 75 C ( K.DC75 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 76 G ( K.DG76 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 77 C ( K.DC77 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 78 T ( K.DT78 0.003 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 79 G ( K.DG79 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 80 T ( K.DT80 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 81 C ( K.DC81 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 82 C ( K.DC82 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 83 C ( K.DC83 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 84 C ( K.DC84 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 85 C ( K.DC85 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 86 G ( K.DG86 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 87 C ( K.DC87 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 88 G ( K.DG88 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 89 T ( K.DT89 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 90 T ( K.DT90 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 91 T ( K.DT91 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 92 T ( K.DT92 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 93 A ( K.DA93 0.008 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 94 A ( K.DA94 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 95 C ( K.DC95 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 96 C ( K.DC96 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 97 G ( K.DG97 0.005 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 98 C ( K.DC98 0.003 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 99 C ( K.DC99 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 100 A ( K.DA100 0.004 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 101 A ( K.DA101 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 102 G ( K.DG102 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 103 G ( K.DG103 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 104 G ( K.DG104 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 105 G ( K.DG105 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 106 A ( K.DA106 0.005 anti,canonical,non-pair-contact,helix,stem,coaxial-stack 107 T ( K.DT107 0.004 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 108 T ( K.DT108 0.003 anti,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 109 A ( K.DA109 0.005 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 110 C ( K.DC110 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 111 T ( K.DT111 0.003 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 112 C ( K.DC112 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 113 C ( K.DC113 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 114 C ( K.DC114 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 115 T ( K.DT115 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 116 A ( K.DA116 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 117 C ( K.DC117 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 118 T ( K.DT118 0.004 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 119 G ( K.DG119 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 120 A ( K.DA120 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 121 C ( K.DC121 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 122 C ( K.DC122 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 123 A ( K.DA123 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 124 G ( K.DG124 0.005 BI,canonical,non-pair-contact,helix,stem,coaxial-stack 125 G ( K.DG125 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 126 T ( K.DT126 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 127 C ( K.DC127 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 128 T ( K.DT128 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 129 C ( K.DC129 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 130 C ( K.DC130 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem-end,coaxial-stack,phosphate 131 G ( L.DG1 0.009 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,phosphate 132 T ( L.DT2 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 133 C ( L.DC3 0.004 anti,canonical,non-pair-contact,helix,stem,coaxial-stack 134 A ( L.DA4 0.005 ~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 135 G ( L.DG5 0.006 anti,~C2'-endo,BI,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack 136 A ( L.DA6 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 137 T ( L.DT7 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 138 A ( L.DA8 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 139 T ( L.DT9 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 140 A ( L.DA10 0.003 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 141 T ( L.DT11 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 142 A ( L.DA12 0.003 anti,canonical,non-pair-contact,helix,stem,coaxial-stack 143 C ( L.DC13 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 144 A ( L.DA14 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 145 T ( L.DT15 0.004 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 146 C ( L.DC16 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 147 C ( L.DC17 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 148 T ( L.DT18 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 149 G ( L.DG19 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 150 T ( L.DT20 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 151 G ( L.DG21 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 152 A ( L.DA22 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 153 T ( L.DT23 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 154 A ) M.DA1 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix-end,stem-end,coaxial-stack 155 T ) M.DT2 0.003 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 156 C ) M.DC3 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 157 A ) M.DA4 0.004 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 158 C ) M.DC5 0.003 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 159 A ) M.DA6 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 160 G ) M.DG7 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 161 G ) M.DG8 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 162 A ) M.DA9 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 163 T ) M.DT10 0.003 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 164 G ) M.DG11 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 165 T ) M.DT12 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 166 A ) M.DA13 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 167 T ) M.DT14 0.004 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 168 A ) M.DA15 0.005 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 169 T ) M.DT16 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 170 A ) M.DA17 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 171 T ) M.DT18 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 172 C ) M.DC19 0.011 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 173 T ) M.DT20 0.005 ~C2'-endo,BII,canonical,non-canonical,non-pair-contact,helix,stem,coaxial-stack 174 G ) M.DG21 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 175 A ) M.DA22 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 176 C ) M.DC23 0.004 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack,phosphate 177 G ) M.DG24 0.011 anti,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 178 G ) M.DG25 0.012 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 179 A ) M.DA26 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 180 G ) M.DG27 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 181 A ) M.DA28 0.005 ~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 182 C ) M.DC29 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 183 C ) M.DC30 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 184 T ) M.DT31 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 185 G ) M.DG32 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 186 G ) M.DG33 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 187 T ) M.DT34 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 188 C ) M.DC35 0.004 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 189 A ) M.DA36 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 190 G ) M.DG37 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 191 T ) M.DT38 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 192 A ) M.DA39 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 193 G ) M.DG40 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 194 G ) M.DG41 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 195 G ) M.DG42 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 196 A ) M.DA43 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 197 G ) M.DG44 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 198 T ) M.DT45 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 199 A ) M.DA46 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 200 A ) M.DA47 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 201 T ) M.DT48 0.003 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 202 C ) M.DC49 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 203 C ) M.DC50 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 204 C ) M.DC51 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 205 C ) M.DC52 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 206 T ) M.DT53 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 207 T ) M.DT54 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 208 G ) M.DG55 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 209 G ) M.DG56 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 210 C ) M.DC57 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 211 G ) M.DG58 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 212 G ) M.DG59 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 213 T ) M.DT60 0.006 anti,canonical,non-pair-contact,helix,stem,coaxial-stack 214 T ) M.DT61 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 215 A ) M.DA62 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 216 A ) M.DA63 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 217 A ) M.DA64 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 218 A ) M.DA65 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 219 C ) M.DC66 0.004 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 220 G ) M.DG67 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 221 C ) M.DC68 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 222 G ) M.DG69 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 223 G ) M.DG70 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 224 G ) M.DG71 0.008 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 225 G ) M.DG72 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 226 G ) M.DG73 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 227 A ) M.DA74 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 228 C ) M.DC75 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 229 A ) M.DA76 0.006 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 230 G ) M.DG77 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 231 C ) M.DC78 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 232 G ) M.DG79 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 233 C ) M.DC80 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 234 G ) M.DG81 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 235 T ) M.DT82 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 236 A ) M.DA83 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 237 C ) M.DC84 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 238 G ) M.DG85 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 239 T ) M.DT86 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 240 G ) M.DG87 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 241 C ) M.DC88 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 242 G ) M.DG89 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 243 T ) M.DT90 0.005 anti,canonical,non-pair-contact,helix,stem,coaxial-stack 244 T ) M.DT91 0.004 anti,canonical,non-pair-contact,helix,stem,coaxial-stack 245 T ) M.DT92 0.005 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 246 A ) M.DA93 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 247 A ) M.DA94 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 248 G ) M.DG95 0.006 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 249 C ) M.DC96 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 250 G ) M.DG97 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 251 G ) M.DG98 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 252 T ) M.DT99 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 253 G ) M.DG100 0.005 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 254 C ) M.DC101 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 255 T ) M.DT102 0.005 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 256 A ) M.DA103 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 257 G ) M.DG104 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 258 A ) M.DA105 0.005 anti,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 259 G ) M.DG106 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 260 C ) M.DC107 0.008 anti,~C3'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 261 T ) M.DT108 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 262 G ) M.DG109 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 263 T ) M.DT110 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 264 C ) M.DC111 0.009 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 265 T ) M.DT112 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 266 A ) M.DA113 0.006 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 267 C ) M.DC114 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 268 G ) M.DG115 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 269 A ) M.DA116 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 270 C ) M.DC117 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 271 C ) M.DC118 0.004 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 272 A ) M.DA119 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 273 A ) M.DA120 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 274 T ) M.DT121 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 275 T ) M.DT122 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 276 G ) M.DG123 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 277 A ) M.DA124 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 278 G ) M.DG125 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 279 C ) M.DC126 0.004 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 280 G ) M.DG127 0.007 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 281 G ) M.DG128 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 282 C ) M.DC129 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 283 C ) M.DC130 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 284 T ) M.DT131 0.004 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 285 C ) M.DC132 0.003 ~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack 286 G ) M.DG133 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 287 G ) M.DG134 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 288 C ) M.DC135 0.003 anti,~C2'-endo,BII,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 289 A ) M.DA136 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 290 C ) M.DC137 0.003 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 291 C ) M.DC138 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 292 G ) M.DG139 0.005 anti,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 293 G ) M.DG140 0.004 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack 294 G ) M.DG141 0.006 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 295 A ) M.DA142 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 296 T ) M.DT143 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 297 T ) M.DT144 0.003 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 298 C ) M.DC145 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 299 T ) M.DT146 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 300 C ) M.DC147 0.002 anti,~C2'-endo,canonical,non-pair-contact,helix,stem,coaxial-stack,phosphate 301 C ) M.DC148 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 302 A ) M.DA149 0.004 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 303 G ) M.DG150 0.005 anti,~C2'-endo,BI,canonical,non-pair-contact,helix,stem,coaxial-stack 304 G ) M.DG151 0.006 anti,BI,canonical,non-pair-contact,helix,stem-end,coaxial-stack 305 A . M.DA152 0.003 ~C2'-endo,non-canonical,non-pair-contact,helix-end,ss-non-loop 306 T . M.DT153 0.002 anti,~C2'-endo,non-stack,ss-non-loop **************************************************************************** List of 8 additional files 1 dssr-pairs.pdb -- an ensemble of base pairs 2 dssr-stems.pdb -- an ensemble of stems 3 dssr-helices.pdb -- an ensemble of helices (coaxial stacking) 4 dssr-2ndstrs.bpseq -- secondary structure in bpseq format 5 dssr-2ndstrs.ct -- secondary structure in connectivity table format 6 dssr-2ndstrs.dbn -- secondary structure in dot-bracket notation 7 dssr-torsions.txt -- backbone torsion angles and suite names 8 dssr-stacks.pdb -- an ensemble of base stacks